Citrus Sinensis ID: 025366

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccHHHHcccccHHcccccccccccccccHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHHHHcccccccccccccccccEEEEccccccccHHHHccccccHHHHccccccccccHHHHHHHHHHHHcccccccccccccccccccccEEccccccEEEEcccccccccccHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cEEEcccccccccccccccccccccccccccccccEEEEEccccccccccccccHHHHHHcccccEEEcccccccccEccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcccccccHHHHHHcccHHHHHHHccccccccHHHHHHHHHHHHccccEEEcccccccccccccccEcccccEEEEEEccEEEcccccHHHHHHHHccc
Coil and Loop (DISEMBL)
mdvsslsttpraclsssstestplkrgelpsghdgflsFSWIrrntnaqpvfgktrslvqnKTSLKVLCSQQREIPVVEARCMDEVYDALAQRllptsalasnvnvkhivglagppgagkstLAAEVVRRINKiwpqkassfdsqvkppdvatvlpmdgfhLYLSqldamedpkeaharrgapwtfnpLLLLNCLKNLrnqgsvyapsfdhgvgdpveddILVGLQHKVvivdgnylfldggvwkdvssmfdek
Flexible Loop (DISEMBL)
mdvsslsttpraclsssstestplkrgelpsgHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVglagppgagKSTLAAEVVRRINKIwpqkassfdsqvkPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK
Low Complexity Region (SEG)
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFnpllllnclknlrnQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK
Disordered region (IsUnstruct)
**********************************GFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK***********DVATVLPMDGFHLYLSQLDA*********RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV*******
Disordered Region (DISOPRED)
***************************************SW*******************************REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK
Disordered Region (DISEMBL)
****************************LPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK********KPPDVATVLPMDGFHLYLSQLDAME********RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK
Disordered Region (DISPRO)
****************SSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q9UTC5	235	Putative uridine kinase C	yes	no	0.527	0.570	0.398	2e-26
C5DNG5	347	ATP-dependent kinase YFH7	yes	no	0.645	0.472	0.269	2e-14
P11664	237	Uncharacterized protein Y	N/A	no	0.606	0.649	0.346	1e-12
C7GYB3	353	ATP-dependent kinase YFH7	N/A	no	0.385	0.277	0.291	9e-11
P43591	353	ATP-dependent kinase YFH7	yes	no	0.385	0.277	0.291	9e-11
A7A245	353	ATP-dependent kinase YFH7	N/A	no	0.385	0.277	0.291	9e-11
B5VI33	353	ATP-dependent kinase YFH7	N/A	no	0.385	0.277	0.291	9e-11
B3LUL5	353	ATP-dependent kinase YFH7	N/A	no	0.385	0.277	0.291	9e-11
C8Z7U0	353	ATP-dependent kinase YFH7	N/A	no	0.385	0.277	0.291	1e-10
C5DXG0	375	ATP-dependent kinase YFH7	yes	no	0.492	0.333	0.273	1e-10

>sp|Q9UTC5|YIDE_SCHPO Putative uridine kinase C227.14 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.14 PE=3 SV=1

 Score =  119 bits (299), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/148 (39%), Positives = 91/148 (61%), Gaps = 14/148 (9%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++GLAG PG+GKSTL A +     K W ++  S        ++  ++PMDGFH  L +LD
Sbjct: 31  LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQ 226
             ++P++A A RGA WTF+  L  + ++ ++      +YAPSFDH +GDPV DDI V  +
Sbjct: 79  RFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK 138

Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           ++++I +GNYL L+   W D   ++D K
Sbjct: 139 NRILIFEGNYLLLNKPPWSDACKLYDIK 166

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 8

>sp|C5DNG5|YFH7_LACTC ATP-dependent kinase YFH7 OS=Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) GN=YFH7 PE=3 SV=1

 Score = 79.3 bits (194), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 58/215 (26%), Positives = 90/215 (41%), Gaps = 51/215 (23%)

Query: 75  IPVVEARCMDEVYDAL-----AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR 129
           IP  E + + +V +        Q   P   +  N   + +VG+ G P +           
Sbjct: 81  IPKFEEKSLHDVQNGFFNHVQDQDFQPKKFVDKNDGSEVVVGIGGLPNS----------I 130

Query: 130 RINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-- 187
           R+  + P + S+ D ++     A ++PMDGFHL    LD  +DP EAH RRG+P TF+  
Sbjct: 131 RVENVAPLEPSNHDYKI-----AKIVPMDGFHLSRRHLDHFDDPVEAHRRRGSPPTFDSN 185

Query: 188 ------PLLLLNCL--------KNLRNQG---------------SVYAPSFDHGVGDPVE 218
                  LL   C         K   + G               S+Y P FDH + DP  
Sbjct: 186 NCLQLCKLLAKTCTIKPTLPVNKTTADTGTLFDKISDTFSESVPSIYVPGFDHALKDPST 245

Query: 219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
               V    ++++++G YL LD   W+D+   F +
Sbjct: 246 GQHCVDAFTRIIVLEGLYLLLDEDNWRDIYPTFKD 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Lachancea thermotolerans (strain ATCC 56472 / CBS 6340 / NRRL Y-8284) (taxid: 559295)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|P11664|YGGC_ECOLI Uncharacterized protein YggC OS=Escherichia coli (strain K12) GN=yggC PE=4 SV=2

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 62/179 (34%), Positives = 88/179 (49%), Gaps = 25/179 (13%)

Query: 78  VEARCMDEVYDALAQRLLPTSALASNVNVKH--IVGLAGPPGAGKSTLAAEVVRRINKIW 135
           ++A+  +E  + + + LL   A    VN +   +V L  PPG GKSTL           W
Sbjct: 12  IQAQYQNEEIENVHKPLLHMLAALQTVNPQRRTVVFLCAPPGTGKSTLTT--------FW 63

Query: 136 PQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCL 195
              A   D ++  P + T LPMDGFH Y S LDA     +    +GAP TF+   +    
Sbjct: 64  EYLAQQ-DPEL--PAIQT-LPMDGFHHYNSWLDA----HQLRPFKGAPETFD---VAKLT 112

Query: 196 KNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
           +NLR   +G    P +D    DPVED + V     +VIV+GN+L LD   W +++S  D
Sbjct: 113 ENLRQVVEGDCTWPQYDRQKHDPVEDALHVTA--PLVIVEGNWLLLDDEKWLELASFCD 169

Escherichia coli (strain K12) (taxid: 83333)

>sp|C7GYB3|YFH7_YEAS2 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain JAY291) GN=YFH7 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQKIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain JAY291) (taxid: 574961)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|P43591|YFH7_YEAST ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YFH7 PE=1 SV=1

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|A7A245|YFH7_YEAS7 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain YJM789) GN=YFH7 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain YJM789) (taxid: 307796)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B5VI33|YFH7_YEAS6 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain AWRI1631) GN=YFH7 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain AWRI1631) (taxid: 545124)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|B3LUL5|YFH7_YEAS1 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain RM11-1a) GN=YFH7 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain RM11-1a) (taxid: 285006)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C8Z7U0|YFH7_YEAS8 ATP-dependent kinase YFH7 OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=YFH7 PE=3 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 55/127 (43%), Gaps = 29/127 (22%)

Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF+    L   K L           
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSH 213

Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273

Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) (taxid: 643680)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

>sp|C5DXG0|YFH7_ZYGRC ATP-dependent kinase YFH7 OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) GN=YFH7 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/168 (27%), Positives = 68/168 (40%), Gaps = 43/168 (25%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
            I+G  G P A   +         N + P + SSF         A ++PMDGFHL    L
Sbjct: 156 QILGRGGLPNAFTIS---------NDVEPDEESSF---------AQIVPMDGFHLSRQCL 197

Query: 168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS------------------------ 203
            + ++P+EAH RRG+P TF+        K L    +                        
Sbjct: 198 SSFQNPQEAHKRRGSPPTFDSNNFAQLCKTLAQTCTIKPGSCDAKSCFEFMAKTYDPHFP 257

Query: 204 -VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM 250
            +  P FDH + DP  D   +    ++VI++G YL  D   W+ V  +
Sbjct: 258 CIKIPGFDHSLKDPTPDQFCLNGHTRIVILEGLYLLYDKENWQRVHEI 305

ATP-dependent kinase that could be involved in endoplasmic reticulum membrane assembly.

Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732 / NBRC 1130 / NCYC 568 / NRRL Y-229) (taxid: 559307)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
255559925	312	ATP binding protein, putative [Ricinus c	0.992	0.807	0.709	2e-97
225437219	312	PREDICTED: putative uridine kinase C227.	0.992	0.807	0.678	3e-90
449519647	251	PREDICTED: putative uridine kinase C227.	0.897	0.908	0.670	5e-87
449452236	309	PREDICTED: putative uridine kinase C227.	0.897	0.737	0.670	5e-87
356572241	309	PREDICTED: ATP-dependent kinase YFH7-lik	0.960	0.789	0.592	4e-79
224082738	231	predicted protein [Populus trichocarpa]	0.677	0.744	0.808	1e-78
297843102	301	phosphoribulokinase/uridine kinase [Arab	0.944	0.797	0.636	2e-78
42561642	301	P-loop containing nucleoside triphosphat	0.952	0.803	0.618	6e-78
255633506	233	unknown [Glycine max]	0.893	0.974	0.588	6e-71
357157235	322	PREDICTED: putative uridine kinase C227.	0.732	0.577	0.655	3e-69

>gi|255559925|ref|XP_002520981.1| ATP binding protein, putative [Ricinus communis] gi|223539818|gb|EEF41398.1| ATP binding protein, putative [Ricinus communis]

 Score =  361 bits (926), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 181/255 (70%), Positives = 207/255 (81%), Gaps = 3/255 (1%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGK-TRSLV 59
           M+VSSLS T RAC  S +TES  LKR   PS H   +S S  +R +  Q +F + T   V
Sbjct: 1   MEVSSLSITSRACPFSPATESLLLKRIRRPSLHQCLVSISLNKRTS--QSLFSRQTGPTV 58

Query: 60  QNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
             + S+KVLCS +R++PVVEA  M E+YDALA+R+LP +A ASN N+KHIVGLAGPPGAG
Sbjct: 59  FKENSIKVLCSLRRDVPVVEASSMGEIYDALAERILPAAAAASNPNLKHIVGLAGPPGAG 118

Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179
           KST+A+EVVRR+NKIWPQKASSFDSQVKPPDVA VLPMDGFHLY SQLDAME+P EAHAR
Sbjct: 119 KSTIASEVVRRVNKIWPQKASSFDSQVKPPDVAAVLPMDGFHLYRSQLDAMENPDEAHAR 178

Query: 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239
           RGAPWTF+P LLL CLK LRN+GSVYAPSFDHGVGDPVEDDI V LQHKV+IV+GNYL L
Sbjct: 179 RGAPWTFSPTLLLECLKKLRNEGSVYAPSFDHGVGDPVEDDIFVSLQHKVIIVEGNYLLL 238

Query: 240 DGGVWKDVSSMFDEK 254
             G WKD+SSMFDEK
Sbjct: 239 GEGAWKDISSMFDEK 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437219|ref|XP_002281875.1| PREDICTED: putative uridine kinase C227.14 [Vitis vinifera] gi|297735493|emb|CBI17933.3| unnamed protein product [Vitis vinifera]

 Score =  337 bits (864), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 173/255 (67%), Positives = 205/255 (80%), Gaps = 3/255 (1%)

Query: 1   MDVSSLSTTPRACLSSSST-ESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLV 59
           M+V+S ST+ +   SSSS+ E   L++ ++P  +   +  S  RR+   QP+FG TRS  
Sbjct: 1   MEVASFSTSSQGFWSSSSSSELFLLRKVKVPITYRCSVLNSPTRRSV--QPLFGGTRSQF 58

Query: 60  QNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAG 119
             ++ LKV CSQ+ EIPVV+ RCMDE+YD LA+RLLPT+A+ASN N+K IVGLAGPPGAG
Sbjct: 59  GRESCLKVSCSQKGEIPVVDGRCMDEIYDTLAERLLPTAAVASNPNLKRIVGLAGPPGAG 118

Query: 120 KSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR 179
           KSTLA+EV  R+NK+WPQKASSFDSQV PPDVA VLPMDGFHLY  QLDAMEDP+EAHAR
Sbjct: 119 KSTLASEVAWRVNKLWPQKASSFDSQVGPPDVAAVLPMDGFHLYRHQLDAMEDPEEAHAR 178

Query: 180 RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL 239
           RGAPWTF+P  LL CLK LR++GSVYAPSFDHGVGDPVEDDI + LQHKVVIV+GNYL L
Sbjct: 179 RGAPWTFDPTRLLTCLKRLRHEGSVYAPSFDHGVGDPVEDDIFISLQHKVVIVEGNYLLL 238

Query: 240 DGGVWKDVSSMFDEK 254
             G WK+VSSMFDEK
Sbjct: 239 QEGDWKEVSSMFDEK 253

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519647|ref|XP_004166846.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus]

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 155/231 (67%), Positives = 188/231 (81%), Gaps = 3/231 (1%)

Query: 24  LKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCM 83
           +K   +P  H+ FLSF+   +  +     G+T    +    + V CSQ+RE  VVE RC+
Sbjct: 23  VKEKPVPRDHN-FLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCI 79

Query: 84  DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           D++YD LA+RLLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS D
Sbjct: 80  DDIYDDLARRLLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMD 139

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS 203
           SQV P DVA VLPMDGFHLY SQLD+ME+P+EAHARRGAPWTFNP LLL CLK LR+QGS
Sbjct: 140 SQVNPADVAAVLPMDGFHLYRSQLDSMENPEEAHARRGAPWTFNPQLLLTCLKTLRSQGS 199

Query: 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           VYAPSFDHGVGDPVEDDI VGLQHKVVIV+GNYL LD GVWK++SS+FDEK
Sbjct: 200 VYAPSFDHGVGDPVEDDIFVGLQHKVVIVEGNYLLLDDGVWKEISSIFDEK 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452236|ref|XP_004143866.1| PREDICTED: putative uridine kinase C227.14-like [Cucumis sativus]

 Score =  326 bits (836), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 155/231 (67%), Positives = 188/231 (81%), Gaps = 3/231 (1%)

Query: 24  LKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCM 83
           +K   +P  H+ FLSF+   +  +     G+T    +    + V CSQ+RE  VVE RC+
Sbjct: 23  VKEKPVPRDHN-FLSFNSAYKYRSLH--CGQTNGFCRKNKCVTVFCSQKREFSVVEGRCI 79

Query: 84  DEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           D++YD LA+RLLPT+A AS+ ++K+IVGLAGPPGAGK+T+A+EVV+R+NK+WPQKASS D
Sbjct: 80  DDIYDDLARRLLPTAAAASDPDLKYIVGLAGPPGAGKTTIASEVVQRLNKLWPQKASSMD 139

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS 203
           SQV P DVA VLPMDGFHLY SQLD+ME+P+EAHARRGAPWTFNP LLL CLK LR+QGS
Sbjct: 140 SQVNPADVAAVLPMDGFHLYRSQLDSMENPEEAHARRGAPWTFNPQLLLTCLKTLRSQGS 199

Query: 204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           VYAPSFDHGVGDPVEDDI VGLQHKVVIV+GNYL LD GVWK++SS+FDEK
Sbjct: 200 VYAPSFDHGVGDPVEDDIFVGLQHKVVIVEGNYLLLDDGVWKEISSIFDEK 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572241|ref|XP_003554278.1| PREDICTED: ATP-dependent kinase YFH7-like [Glycine max]

 Score =  300 bits (767), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 154/260 (59%), Positives = 185/260 (71%), Gaps = 16/260 (6%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHDGFLSFSWIRRNTNAQPVFGK 54
           M+ +  STT R   + +   + PL       R   PS      S S  R +   Q    +
Sbjct: 1   MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54

Query: 55  TRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
           TR      +  KVL +++ +I VVE   +DE+YDAL  R+LP  +++SN N K +VGLAG
Sbjct: 55  TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110

Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174
           PPGAGKSTLA EV RRINK+WP+KASSFDSQV+ PDVA V+PMDGFHLY S+LD ME+P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170

Query: 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
           EAHARRGAPWTFNPL LL CLKNLR  GSVY PSFDHGVGDPVEDDI V LQHKVVIV+G
Sbjct: 171 EAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEG 230

Query: 235 NYLFLDGGVWKDVSSMFDEK 254
           NYL L+ GVWK++SS+FDEK
Sbjct: 231 NYLLLEDGVWKEISSLFDEK 250

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082738|ref|XP_002306820.1| predicted protein [Populus trichocarpa] gi|222856269|gb|EEE93816.1| predicted protein [Populus trichocarpa]

 Score =  298 bits (764), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 139/172 (80%), Positives = 154/172 (89%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           MDE+YDALA RLLPT+  ASN N K+IV LAGPPGAGKSTLA+E+V R+N++WPQKASSF
Sbjct: 1   MDEIYDALAIRLLPTAPAASNPNFKYIVALAGPPGAGKSTLASEIVHRVNRLWPQKASSF 60

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 202
           D QVKPPDVA VLPMDGFHLY SQLDAME+P+EAHARRGAPWTF+P LLL CL+ LRN+G
Sbjct: 61  DLQVKPPDVAAVLPMDGFHLYRSQLDAMENPEEAHARRGAPWTFSPTLLLRCLEKLRNEG 120

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           SVYAPSFDHGVGDPVEDDI V LQHKVVIV+GNYL L+ G WKDVSSMFDEK
Sbjct: 121 SVYAPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYLLLEDGAWKDVSSMFDEK 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843102|ref|XP_002889432.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata] gi|297335274|gb|EFH65691.1| phosphoribulokinase/uridine kinase [Arabidopsis lyrata subsp. lyrata]

 Score =  298 bits (762), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 163/256 (63%), Positives = 191/256 (74%), Gaps = 16/256 (6%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
           M+VSS ST PR C S S          EL S   GF    W       Q +     S  +
Sbjct: 1   MEVSSFSTVPRYCNSRSFV-------AEL-SRFRGFNVHLW------DQSLVPLHLSFRK 46

Query: 61  NKTSLKVL--CSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGA 118
            KT+ + L  CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGA
Sbjct: 47  RKTTPRFLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGA 106

Query: 119 GKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA 178
           GKSTLA EVVRR+NK+WPQKASSFD++VKP DVA VLPMDGFHLY SQLDAMEDPKEAHA
Sbjct: 107 GKSTLANEVVRRVNKLWPQKASSFDAEVKPSDVAIVLPMDGFHLYRSQLDAMEDPKEAHA 166

Query: 179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF 238
           RRGAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ 
Sbjct: 167 RRGAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYIL 226

Query: 239 LDGGVWKDVSSMFDEK 254
           L+ G WKD+S MFDEK
Sbjct: 227 LEEGSWKDISDMFDEK 242

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561642|ref|NP_171802.2| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana] gi|63147412|gb|AAY34179.1| At1g03030 [Arabidopsis thaliana] gi|108385285|gb|ABF85769.1| At1g03030 [Arabidopsis thaliana] gi|110737366|dbj|BAF00628.1| hypothetical protein [Arabidopsis thaliana] gi|332189396|gb|AEE27517.1| P-loop containing nucleoside triphosphate hydrolase-like protein [Arabidopsis thaliana]

 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 157/254 (61%), Positives = 188/254 (74%), Gaps = 12/254 (4%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
           M+VSS ST PR C S S        RG        F    W   + +  P+    R   +
Sbjct: 1   MEVSSFSTVPRYCNSRSFVPELSRFRG--------FKVHLW---DQSLVPLHFSIRKR-K 48

Query: 61  NKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
           N     + CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGAGK
Sbjct: 49  NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108

Query: 121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
           ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct: 109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168

Query: 181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
           GAPWTF+P LLLNCLK L+N+GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct: 169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228

Query: 241 GGVWKDVSSMFDEK 254
            G WKD+S MFDEK
Sbjct: 229 EGSWKDISDMFDEK 242

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255633506|gb|ACU17111.1| unknown [Glycine max]

 Score =  273 bits (697), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 143/243 (58%), Positives = 170/243 (69%), Gaps = 16/243 (6%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPL------KRGELPSGHDGFLSFSWIRRNTNAQPVFGK 54
           M+ +  STT R   + +   + PL       R   PS      S S  R +   Q    +
Sbjct: 1   MEATFSSTTARGYWNQTRGSTEPLLLRVDEARDRKPS------SLSIARPSKFVQLSLAR 54

Query: 55  TRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAG 114
           TR      +  KVL +++ +I VVE   +DE+YDAL  R+LP  +++SN N K +VGLAG
Sbjct: 55  TR----KSSFFKVLSAEKEQIHVVEGSRVDELYDALVTRILPLVSVSSNPNHKLLVGLAG 110

Query: 115 PPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK 174
           PPGAGKSTLA EV RRINK+WP+KASSFDSQV+ PDVA V+PMDGFHLY S+LD ME+P+
Sbjct: 111 PPGAGKSTLAHEVARRINKLWPEKASSFDSQVQLPDVAIVVPMDGFHLYRSELDEMENPE 170

Query: 175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
           EAHARRGAPWTFNPL LL CLKNLR  GSVY PSFDHGVGDPVEDDI V LQHKVVIV+G
Sbjct: 171 EAHARRGAPWTFNPLRLLQCLKNLRMHGSVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEG 230

Query: 235 NYL 237
           NYL
Sbjct: 231 NYL 233

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357157235|ref|XP_003577730.1| PREDICTED: putative uridine kinase C227.14-like [Brachypodium distachyon]

 Score =  267 bits (682), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 122/186 (65%), Positives = 149/186 (80%)

Query: 69  CSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV 128
           C Q++  P +EA+ M+EVYDALA+ LL       +++ K+IVGLAGPPGAGKST+A+EVV
Sbjct: 76  CYQRQGAPQIEAKSMEEVYDALAEHLLSVLKDVDHLDSKYIVGLAGPPGAGKSTVASEVV 135

Query: 129 RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP 188
           RR+N  W +K ++  S +   D+AT+LPMDGFHLY SQLDAMEDPKEAHARRGAPWTFNP
Sbjct: 136 RRVNMHWSKKHATDSSLISNEDIATMLPMDGFHLYRSQLDAMEDPKEAHARRGAPWTFNP 195

Query: 189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS 248
            L LNCLK LR +GSVYAPSFDHGVGDPVE+DI V  QHK+VIV+GNYL L+  +W+D+ 
Sbjct: 196 SLFLNCLKTLRKEGSVYAPSFDHGVGDPVENDIFVKPQHKIVIVEGNYLLLEENIWRDIR 255

Query: 249 SMFDEK 254
            MFDEK
Sbjct: 256 GMFDEK 261

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
TAIR|locus:2007544	301	AT1G03030 [Arabidopsis thalian	0.952	0.803	0.590	4.6e-73
POMBASE|SPAC227.14	235	SPAC227.14 "uridine kinase (pr	0.527	0.570	0.391	2.6e-24
UNIPROTKB|G4MQ63	236	MGG_02303 "Phosphoribulokinase	0.622	0.669	0.390	4.8e-23
CGD|CAL0002107	226	orf19.7061 [Candida albicans (	0.539	0.606	0.366	1.9e-21
ASPGD|ASPL0000074767	234	AN4382 [Emericella nidulans (t	0.555	0.602	0.350	4.4e-20
ASPGD|ASPL0000094429	583	AN11942 [Emericella nidulans (	0.397	0.173	0.358	6.8e-14
SGD|S000001903	353	YFH7 "Putative kinase with sim	0.531	0.382	0.275	2.2e-09
UNIPROTKB|P11664	237	yggC "conserved protein with n	0.377	0.405	0.375	3.4e-07

TAIR|locus:2007544 AT1G03030 [Arabidopsis thaliana (taxid:3702)]

 Score = 738 (264.8 bits), Expect = 4.6e-73, P = 4.6e-73
 Identities = 150/254 (59%), Positives = 179/254 (70%)

Query:     1 MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPVFGKTRSLVQ 60
             M+VSS ST PR C S S     P    EL S   GF    W   + +  P+    R   +
Sbjct:     1 MEVSSFSTVPRYCNSRSFV---P----EL-SRFRGFKVHLW---DQSLVPLHFSIRKR-K 48

Query:    61 NKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGK 120
             N     + CSQ++++ VV+  CMDE+YD LA+RL+PT+A   + N+K +VGLAGPPGAGK
Sbjct:    49 NTPRYLISCSQKKDVTVVDGSCMDEIYDKLAERLVPTAAAMFSPNLKRLVGLAGPPGAGK 108

Query:   121 STLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
             ST+A EVVRR+NK+WPQKA+SFD++V PPDVA VLPMDGFHLY SQLDAMEDPKEAHARR
Sbjct:   109 STVANEVVRRVNKLWPQKAASFDAEVNPPDVAIVLPMDGFHLYRSQLDAMEDPKEAHARR 168

Query:   181 GAPWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
             GAPWTF              +GSVY PSFDHGVGDPVEDDI V LQHKVVIV+GNY+ L+
Sbjct:   169 GAPWTFDPALLLNCLKKLKNEGSVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLE 228

Query:   241 GGVWKDVSSMFDEK 254
              G WKD+S MFDEK
Sbjct:   229 EGSWKDISDMFDEK 242

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=ISS

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

POMBASE|SPAC227.14 SPAC227.14 "uridine kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 58/148 (39%), Positives = 84/148 (56%)

Query:   109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
             ++GLAG PG+GKSTL A +     K W ++  S        ++  ++PMDGFH  L +LD
Sbjct:    31 LIGLAGGPGSGKSTLCAILA----KAWNERFGS--------EIVKIIPMDGFHYSLEELD 78

Query:   169 AMEDPKEAHARRGAPWTFXXXXXXXXXXXXX--XQGSVYAPSFDHGVGDPVEDDILVGLQ 226
               ++P++A A RGA WTF                   +YAPSFDH +GDPV DDI V  +
Sbjct:    79 RFDNPEKARALRGAEWTFDADLFYSLVRLMKKITDRELYAPSFDHAIGDPVVDDICVEPK 138

Query:   227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
             ++++I +GNYL L+   W D   ++D K
Sbjct:   139 NRILIFEGNYLLLNKPPWSDACKLYDIK 166

GO:0004849 "uridine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0008150 "biological_process" evidence=ND

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|G4MQ63 MGG_02303 "Phosphoribulokinase/uridine kinase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 266 (98.7 bits), Expect = 4.8e-23, P = 4.8e-23
 Identities = 68/174 (39%), Positives = 94/174 (54%)

Query:    90 LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP 149
             LA+++     LA     + ++G+AG PGAGK+TLA  VV  +  I   +  + D +    
Sbjct:     9 LAKKVWARYKLAEPTK-RILIGIAGIPGAGKTTLARRVVDELKAIQLAEDGTADGEF--- 64

Query:   150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXX--------XQ 201
                T +PMDG+HL  +QL AM DP+ A  RRGA +TF                      Q
Sbjct:    65 --VTDIPMDGYHLTRAQLAAMPDPEMAIHRRGAAFTFDGEGFLALLQKLSLPVEEDSGAQ 122

Query:   202 GSV--YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
             G+V  YAPSFDH V DPV D I +  + ++VI++GNYL LD   WK  +S+ DE
Sbjct:   123 GTVTIYAPSFDHAVKDPVADSIPISPKMRIVIIEGNYLALDREPWKSAASLLDE 176

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

CGD|CAL0002107 orf19.7061 [Candida albicans (taxid:5476)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 56/153 (36%), Positives = 85/153 (55%)

Query:   102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFH 161
             S+   ++++ LAG PG+GK+T A  + +R+        S+F   V       VL  DGFH
Sbjct:    29 SDSQPRYLISLAGVPGSGKTTFANAIAKRL--------STFAKVV-------VLSQDGFH 73

Query:   162 LYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG-SVYAPSFDHGVGDPVEDD 220
             LY S+L  M DPKEA  RRGAP+TF              +  ++ APSFDH + DP+EDD
Sbjct:    74 LYRSELTLMADPKEAFRRRGAPFTFNAQAFVNLISKLKDRSQTIKAPSFDHKLKDPIEDD 133

Query:   221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
             I++     ++I++GNY+ L    W ++ +  D+
Sbjct:   134 IVIHGNVDIIIIEGNYVSLRDKYWDEIENFVDD 166

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

ASPGD|ASPL0000074767 AN4382 [Emericella nidulans (taxid:162425)]

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 54/154 (35%), Positives = 84/154 (54%)

Query:   105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
             N + ++ ++G PG+GK+ LA  + RRIN    +K  + +  +    +A  +PMDG+HL  
Sbjct:    22 NARLLIAVSGIPGSGKTELAITMARRIN----EKHGAQNGDL----IAAAIPMDGYHLTR 73

Query:   165 SQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQ-----GSVYAPSFDHGVGDPVED 219
             +QL  M DP+ A ARRGA +TF                     +++APSFDH V DPV++
Sbjct:    74 AQLAQMPDPEYAAARRGAAFTFDGEKFLALVRALREPLTPKTQTLHAPSFDHAVKDPVDN 133

Query:   220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
             DI +    +V+  +GNYL L+   W   + + DE
Sbjct:   134 DIPIAAARRVIFFEGNYLSLNKEPWSSAAKLMDE 167

GO:0008150 "biological_process" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

ASPGD|ASPL0000094429 AN11942 [Emericella nidulans (taxid:162425)]

 Score = 189 (71.6 bits), Expect = 6.8e-14, P = 6.8e-14
 Identities = 42/117 (35%), Positives = 60/117 (51%)

Query:   152 ATVLPMDGFHLYLSQLDAMEDPK--EAHARRGAPWTFX--------------XXXXXXXX 195
             A VL MDGFHL  S+LD + + +  EA+ RRGAPWTF                       
Sbjct:    74 ALVLSMDGFHLPRSELDTLPNKERTEAYVRRGAPWTFDIPAFLEFMRTLRLWADSGSPSS 133

Query:   196 XXXXXQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
                   G +YAP+F H   DP+ + I++     +VI++GNYL LD   W+D++ + D
Sbjct:   134 SSEETAGVLYAPTFSHSTKDPIPNSIVIDHTTSIVIIEGNYLLLDKPQWRDIAPLVD 190

GO:0006059 "hexitol metabolic process" evidence=RCA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=RCA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0000166 "nucleotide binding" evidence=IEA

SGD|S000001903 YFH7 "Putative kinase with similarity to the PRK/URK/PANK kinase subfamily" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 115 (45.5 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
 Identities = 41/149 (27%), Positives = 70/149 (46%)

Query:    40 SWIRRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCM--DEVYDALAQRLLPT 97
             +++  + N   V  + + +V    SLK L    +   ++E + +  D V D   Q +  +
Sbjct:    54 TFLSEHPNVIEVNDRLKPMVNLVDSLKTL-QPNKVAEMIENQGLFKDHVEDVNFQPVKYS 112

Query:    98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM 157
             +  ++N     +V   G   A +       V  +NK+      + DS     ++A ++PM
Sbjct:   113 ALTSNNEECTAVVARGGTANAIRIAAVDNPVN-VNKL------AQDSI----NIAQIVPM 161

Query:   158 DGFHLYLSQLDAMEDPKEAHARRGAPWTF 186
             DGFHL    LD  +DP+ AH RRG+P TF
Sbjct:   162 DGFHLSRRCLDLFKDPQTAHKRRGSPSTF 190

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016887 "ATPase activity" evidence=IDA

GO:0016301 "kinase activity" evidence=IEA;ISS

GO:0016310 "phosphorylation" evidence=IEA;ISS

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

UNIPROTKB|P11664 yggC "conserved protein with nucleoside triphosphate hydrolase domain" [Escherichia coli K-12 (taxid:83333)]

 Score = 135 (52.6 bits), Expect = 3.4e-07, P = 3.4e-07
 Identities = 39/104 (37%), Positives = 51/104 (49%)

Query:   149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPS 208
             P + T LPMDGFH Y S LDA     +    +GAP TF              +G    P 
Sbjct:    74 PAIQT-LPMDGFHHYNSWLDA----HQLRPFKGAPETFDVAKLTENLRQVV-EGDCTWPQ 127

Query:   209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
             +D    DPVED + V     +VIV+GN+L LD   W +++S  D
Sbjct:   128 YDRQKHDPVEDALHVTAP--LVIVEGNWLLLDDEKWLELASFCD 169

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023843001	SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (312 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00014548001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (459 aa)	•						•		0.415

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
PRK09270	229	PRK09270, PRK09270, nucleoside triphosphate hydrol	9e-39
COG1072	283	COG1072, CoaA, Panthothenate kinase [Coenzyme meta	3e-33
COG0572	218	COG0572, Udk, Uridine kinase [Nucleotide transport	3e-11
cd02023	198	cd02023, UMPK, Uridine monophosphate kinase (UMPK,	4e-08
pfam00485	197	pfam00485, PRK, Phosphoribulokinase / Uridine kina	4e-08
cd02028	179	cd02028, UMPK_like, Uridine monophosphate kinase_l	5e-06
TIGR00235	207	TIGR00235, udk, uridine kinase	2e-05
COG4240	300	COG4240, COG4240, Predicted kinase [General functi	2e-05
pfam13207	114	pfam13207, AAA_17, AAA domain	9e-05
COG1703	323	COG1703, ArgK, Putative periplasmic protein kinase	2e-04
PRK05480	209	PRK05480, PRK05480, uridine/cytidine kinase; Provi	2e-04
cd02025	220	cd02025, PanK, Pantothenate kinase (PanK) catalyze	7e-04
smart00382	148	smart00382, AAA, ATPases associated with a variety	8e-04
cd02024	187	cd02024, NRK1, Nicotinamide riboside kinase (NRK)	0.001
cd02026	273	cd02026, PRK, Phosphoribulokinase (PRK) is an enzy	0.001
PRK03695	248	PRK03695, PRK03695, vitamin B12-transporter ATPase	0.003
pfam03308	267	pfam03308, ArgK, ArgK protein	0.004
PLN02348	395	PLN02348, PLN02348, phosphoribulokinase	0.004

>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase domain-containing protein; Reviewed

 Score =  134 bits (339), Expect = 9e-39
 Identities = 68/178 (38%), Positives = 94/178 (52%), Gaps = 19/178 (10%)

Query: 78  VEARCMDEVYDALAQRLLP-TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP 136
           V+A+  DE  +A+ + LL   +AL +    + IVG+AGPPGAGKSTLA  +   + +   
Sbjct: 3   VQAQYRDEEIEAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTLAEFLEALLQQ--- 59

Query: 137 QKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK 196
                          A  +PMDGFHL  + LDA         R+GAP TF+   L   L+
Sbjct: 60  ----------DGELPAIQVPMDGFHLDNAVLDAHG----LRPRKGAPETFDVAGLAALLR 105

Query: 197 NLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
            LR     VY P FD  + DPV D I+V    ++VIV+GNYL LD   W+ ++ +FD 
Sbjct: 106 RLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDF 163

Length = 229

>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism]

 Score =  121 bits (306), Expect = 3e-33
 Identities = 50/155 (32%), Positives = 74/155 (47%), Gaps = 18/155 (11%)

Query: 100 LASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD 158
           L +N      I+G+AG    GKST A  +++ +   WP+           P V  V  MD
Sbjct: 74  LGTNNQQRPFIIGIAGSVAVGKSTTA-RILQALLSRWPES----------PKVDLV-TMD 121

Query: 159 GFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPV 217
           GFH   + LD         AR+G P +++   LL  L +++     V+AP + H + DPV
Sbjct: 122 GFHYPNAVLDERG----LMARKGFPESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPV 177

Query: 218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD 252
            D   V  Q  ++IV+GN +  DG  W  +S  FD
Sbjct: 178 PDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFD 212

Length = 283

>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism]

 Score = 60.8 bits (148), Expect = 3e-11
 Identities = 36/146 (24%), Positives = 59/146 (40%), Gaps = 24/146 (16%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+AG  G+GK+T+A E+  ++                      V+ +D ++   S L 
Sbjct: 10  IIGIAGGSGSGKTTVAKELSEQLGVEKV----------------VVISLDDYYKDQSHLP 53

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
             E           P  F+  LL+  LK+L+    V  P +D+       + I V     
Sbjct: 54  FEE---RNKINYDHPEAFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPND- 109

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEK 254
           VVIV+G  L  D    + +  + D K
Sbjct: 110 VVIVEGILLLYD----ERLRDLMDLK 131

Length = 218

>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2

 Score = 51.4 bits (124), Expect = 4e-08
 Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 36/152 (23%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+AG  G+GK+T+A E++ ++                      ++  D ++  LS   
Sbjct: 1   IIGIAGGSGSGKTTVAEEIIEQLGNPK----------------VVIISQDSYYKDLS--- 41

Query: 169 AMEDPKEA------HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL 222
             E+ +E       H      + F+  LL++ L++L+N  SV  P +D      +++ + 
Sbjct: 42  -HEELEERKNNNYDHP---DAFDFD--LLISHLQDLKNGKSVEIPVYDFKTHSRLKETVT 95

Query: 223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           V     V+I++G     D    K++  + D K
Sbjct: 96  VY-PADVIILEGILALYD----KELRDLMDLK 122

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. Length = 198

>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family

 Score = 51.6 bits (124), Expect = 4e-08
 Identities = 39/153 (25%), Positives = 56/153 (36%), Gaps = 27/153 (17%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+ G  GAGK+T    V R    I       F  +  P         D FH Y     
Sbjct: 1   IIGVTGSSGAGKTT----VARTFVSI-------FGREGVPAAGIE---GDSFHRYDRFYM 46

Query: 169 --AMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQGSVYAP--SFDHGVGDPVEDDI 221
               ED K A        +P   +  LL    K L+  GS   P  +   G  DP   ++
Sbjct: 47  DLHPEDRKRAGNNHYSFFSPEANDFDLLYEQFKELKEGGSGDKPIYNHVTGEADPTWPEL 106

Query: 222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           + G    ++  +G    L G   + V+ + D K
Sbjct: 107 IEG--ADILFYEG----LHGLYDERVAQLLDLK 133

In Arabidopsis the region carries two binding domains, a phosphoribosylpyrophosphate-binding domain and, at the very C-terminus, a uracil-binding domain. Length = 197

>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

 Score = 45.4 bits (108), Expect = 5e-06
 Identities = 38/130 (29%), Positives = 50/130 (38%), Gaps = 24/130 (18%)

Query: 109 IVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
           +VG+AGP G+GK+T A +     R+N I P    S D    P         DG + + S 
Sbjct: 1   VVGIAGPSGSGKTTFAKKLSNQLRVNGIGP-VVISLDDYYVPRKTPRDE--DGNYDFESI 57

Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
           LD                    LL  N L +L N   V  P +D   G       L    
Sbjct: 58  LDL------------------DLLNKN-LHDLLNGKEVELPIYDFRTGKRRGYRKLKLPP 98

Query: 227 HKVVIVDGNY 236
             VVI++G Y
Sbjct: 99  SGVVILEGIY 108

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK). Length = 179

>gnl|CDD|232890 TIGR00235, udk, uridine kinase

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 31/135 (22%), Positives = 58/135 (42%), Gaps = 26/135 (19%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G+ G  G+GK+T+A ++  ++ K+                   ++  D ++   S L 
Sbjct: 8   IIGIGGGSGSGKTTVARKIYEQLGKLE----------------IVIISQDNYYKDQSHL- 50

Query: 169 AMEDPKEA---HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL 225
            M + K+    H     P  F+  LL   LKNL+N   +  P +D+      ++ + +  
Sbjct: 51  EMAERKKTNFDH-----PDAFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKETVHIE- 104

Query: 226 QHKVVIVDGNYLFLD 240
              VVI++G     D
Sbjct: 105 PKDVVILEGIMPLFD 119

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below [Purines, pyrimidines, nucleosides, and nucleotides, Salvage of nucleosides and nucleotides]. Length = 207

>gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction only]

 Score = 44.9 bits (106), Expect = 2e-05
 Identities = 38/134 (28%), Positives = 61/134 (45%), Gaps = 23/134 (17%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           IVG++GP G+GKSTL+A +VR +     ++ ++               +D    YL+  D
Sbjct: 52  IVGISGPQGSGKSTLSALIVRLLAAKGLERTATLS-------------LDDL--YLTHAD 96

Query: 169 AMEDPKEAHAR---RGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDH----GVGDPVEDD 220
            +   ++ +     RG P T +P L LN L  +   G  V  P FD     G GD     
Sbjct: 97  RLRLARQVNPLLQTRGLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQT 156

Query: 221 ILVGLQHKVVIVDG 234
             +  +  +VI++G
Sbjct: 157 QWIKFEVDIVILEG 170

Length = 300

>gnl|CDD|221983 pfam13207, AAA_17, AAA domain

 Score = 40.4 bits (94), Expect = 9e-05
 Identities = 11/24 (45%), Positives = 18/24 (75%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           I+ + GPPG+GKSTLA ++  ++ 
Sbjct: 1   IILITGPPGSGKSTLAKKLAEKLG 24

Length = 114

>gnl|CDD|224617 COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 25/58 (43%), Positives = 32/58 (55%), Gaps = 4/58 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR 130
           R I +VE+R  D    ALA+ LL   AL       H++G+ G PGAGKSTL   + R 
Sbjct: 21  RAITLVESRRPDH--RALARELL--RALYPRTGNAHVIGITGVPGAGKSTLIEALGRE 74

Length = 323

>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional

 Score = 40.9 bits (97), Expect = 2e-04
 Identities = 35/150 (23%), Positives = 64/150 (42%), Gaps = 30/150 (20%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL 167
            I+G+AG  G+GK+T+A+ +   +                   +A V+P D ++   S L
Sbjct: 7   IIIGIAGGSGSGKTTVASTIYEEL---------------GDESIA-VIPQDSYYKDQSHL 50

Query: 168 DAMEDPKEA---HARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG 224
              E+  +    H     P  F+  LL+  LK L+   ++  P +D+      ++ I V 
Sbjct: 51  S-FEERVKTNYDH-----PDAFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKETIRVE 104

Query: 225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
               V+I++G  L  D    + +  + D K
Sbjct: 105 -PKDVIILEGILLLED----ERLRDLMDIK 129

Length = 209

>gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 26/150 (17%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----L 164
           I+G+AG    GKST  A V++ +   WP   +         ++ T    DGF LY    L
Sbjct: 1   IIGIAGSVAVGKSTT-ARVLQALLSRWPDHPNV--------ELITT---DGF-LYPNKEL 47

Query: 165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILV 223
            +   M+       R+G P +++   LL  LK++++    V  P + H   D +  +   
Sbjct: 48  IERGLMD-------RKGFPESYDMEALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQT 100

Query: 224 GLQHKVVIVDG-NYLFLDGGVWKDVSSMFD 252
             Q  ++I++G N L         VS  FD
Sbjct: 101 VDQPDILIIEGLNVLQTGQNPRLFVSDFFD 130

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis. Length = 220

>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities

 Score = 38.5 bits (89), Expect = 8e-04
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
             ++ + GPPG+GK+TLA  + R +  
Sbjct: 2   GEVILIVGPPGSGKTTLARALARELGP 28

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148

>gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

 Score = 38.8 bits (91), Expect = 0.001
 Identities = 35/167 (20%), Positives = 60/167 (35%), Gaps = 54/167 (32%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF----------DSQV-------KPPDV 151
           IVG++G   +GK+TLA    + + +I P   +            + ++       K  DV
Sbjct: 1   IVGISGVTNSGKTTLA----KLLQRILP---NCCVIHQDDFFKPEDEIPVDENGFKQWDV 53

Query: 152 ATVLPMDGFHLYLSQLDA-MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFD 210
              L M+     +S LD   E                        K LR+ G+   P  +
Sbjct: 54  LEALDMEAM---MSTLDYWRETGHFP-------------------KFLRSHGNENDPEKE 91

Query: 211 HGVGDPV---EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
                 +   + D+L      ++IVDG  L+      K +  +FD +
Sbjct: 92  FIEDAQIEETKADLLGAEDLHILIVDGFLLYNY----KPLVDLFDIR 134

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside. Length = 187

>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

 Score = 39.2 bits (92), Expect = 0.001
 Identities = 38/154 (24%), Positives = 67/154 (43%), Gaps = 41/154 (26%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLY----- 163
           I+G+AG  G GKST     +RR+  ++              D+ TV+ +D +H       
Sbjct: 1   IIGVAGDSGCGKSTF----LRRLTSLF------------GSDLVTVICLDDYHSLDRKGR 44

Query: 164 -LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG--DPVEDD 220
             + + A+ DP+  +        F+  L+   LK L+   ++  P ++H  G  DP E  
Sbjct: 45  KETGITAL-DPRANN--------FD--LMYEQLKALKEGQAIEKPIYNHVTGLIDPPE-- 91

Query: 221 ILVGLQHKVVIVDGNYLFLDGGVWK--DVSSMFD 252
            L+     +V+++G +   D  V +  D S   D
Sbjct: 92  -LIKPTK-IVVIEGLHPLYDERVRELLDFSVYLD 123

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis. Length = 273

>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional

 Score = 38.0 bits (89), Expect = 0.003
 Identities = 19/37 (51%), Positives = 22/37 (59%), Gaps = 3/37 (8%)

Query: 89  ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAA 125
           A++ RL P SA    V    I+ L GP GAGKSTL A
Sbjct: 7   AVSTRLGPLSAE---VRAGEILHLVGPNGAGKSTLLA 40

Length = 248

>gnl|CDD|112137 pfam03308, ArgK, ArgK protein

 Score = 37.3 bits (87), Expect = 0.004
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 8/51 (15%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTL 123
           R I +VE+R         A+ LL    L       H VG+ G PGAGKSTL
Sbjct: 3   RAITLVESR------RPEARELL--RRLMPLTGRAHRVGITGVPGAGKSTL 45

The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems. Length = 267

>gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase

 Score = 37.5 bits (87), Expect = 0.004
 Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 28/153 (18%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIW-----PQKASSFDSQVKPPDVATVLPMDGFHLY 163
           ++GLA   G GKST     +RR+  ++     P K  + DS     D  TV+ +D +H  
Sbjct: 51  VIGLAADSGCGKSTF----MRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHS- 105

Query: 164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH--GVGDPVEDDI 221
              LD     KE       P   N  L+   +K L+   +V  P ++H  G+ DP E   
Sbjct: 106 ---LD-RTGRKEKGVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPPE--- 158

Query: 222 LVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFD 252
              L    K+++++G +   D    + V  + D
Sbjct: 159 ---LIEPPKILVIEGLHPMYD----ERVRDLLD 184

Length = 395

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	100.0
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	100.0
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	100.0
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	100.0
COG2884	223	FtsE Predicted ATPase involved in cell division [C	100.0
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	100.0
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	100.0
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	100.0
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	100.0
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	100.0
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	100.0
COG1127	263	Ttg2A ABC-type transport system involved in resist	100.0
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	100.0
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	100.0
COG3638	258	ABC-type phosphate/phosphonate transport system, A	100.0
PRK13537	306	nodulation ABC transporter NodI; Provisional	100.0
PRK13536	340	nodulation factor exporter subunit NodI; Provision	100.0
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	100.0
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	100.0
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	100.0
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	100.0
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	100.0
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	100.0
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	100.0
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	100.0
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	100.0
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	100.0
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	100.0
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	100.0
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	100.0
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	100.0
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	100.0
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	100.0
COG4525	259	TauB ABC-type taurine transport system, ATPase com	100.0
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	100.0
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	100.0
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	100.0
cd03269	210	ABC_putative_ATPase This subfamily is involved in	100.0
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	100.0
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	100.0
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	100.0
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	100.0
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	100.0
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	100.0
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	100.0
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	100.0
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	100.0
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	100.0
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	100.0
COG4152	300	ABC-type uncharacterized transport system, ATPase	100.0
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	100.0
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	100.0
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	100.0
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	100.0
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	100.0
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	100.0
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	100.0
PRK10908	222	cell division protein FtsE; Provisional	100.0
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	100.0
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	100.0
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	100.0
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	100.0
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	100.0
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	100.0
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	100.0
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	100.0
COG0410	237	LivF ABC-type branched-chain amino acid transport	100.0
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	100.0
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	100.0
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	100.0
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	100.0
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	100.0
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	100.0
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	100.0
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	100.0
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	100.0
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	100.0
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	100.0
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	100.0
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	100.0
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	100.0
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	100.0
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	100.0
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	100.0
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	100.0
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	100.0
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	100.0
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	100.0
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	99.98
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	99.98
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	99.98
COG0411	250	LivG ABC-type branched-chain amino acid transport	99.98
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	99.98
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	99.98
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	99.98
COG1123	539	ATPase components of various ABC-type transport sy	99.98
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	99.98
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	99.98
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	99.98
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	99.98
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	99.98
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	99.98
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	99.98
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	99.98
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	99.98
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	99.98
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	99.98
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	99.98
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	99.98
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	99.98
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	99.97
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	99.97
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	99.97
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	99.97
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	99.97
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	99.97
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	99.97
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	99.97
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	99.97
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	99.97
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	99.97
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	99.97
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	99.97
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	99.97
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	99.97
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	99.97
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	99.97
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	99.97
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.97
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	99.97
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	99.97
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	99.97
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	99.97
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	99.97
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	99.97
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	99.97
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	99.97
PRK09984	262	phosphonate/organophosphate ester transporter subu	99.97
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	99.97
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	99.97
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.97
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	99.97
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	99.97
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.97
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	99.97
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	99.97
COG4181	228	Predicted ABC-type transport system involved in ly	99.97
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.97
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	99.97
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	99.97
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	99.97
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	99.97
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	99.97
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	99.97
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	99.97
COG1123	539	ATPase components of various ABC-type transport sy	99.97
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	99.97
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	99.97
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	99.97
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.97
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03299	235	ABC_ModC_like Archeal protein closely related to M	99.97
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK10261	623	glutathione transporter ATP-binding protein; Provi	99.97
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	99.97
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	99.97
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.97
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	99.97
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	99.97
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.97
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	99.97
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	99.97
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	99.97
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.97
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	99.97
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	99.97
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	99.97
COG4598	256	HisP ABC-type histidine transport system, ATPase c	99.97
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	99.97
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	99.97
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	99.97
PRK10938	490	putative molybdenum transport ATP-binding protein	99.97
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	99.97
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	99.97
cd03215	182	ABC_Carb_Monos_II This family represents domain II	99.97
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	99.97
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	99.97
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	99.97
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	99.97
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.97
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	99.97
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	99.97
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	99.97
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	99.97
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	99.97
cd03234	226	ABCG_White The White subfamily represents ABC tran	99.96
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	99.96
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	99.96
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.96
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	99.96
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	99.96
cd03246	173	ABCC_Protease_Secretion This family represents the	99.96
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	99.96
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	99.96
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.96
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	99.96
PRK13546	264	teichoic acids export protein ATP-binding subunit;	99.96
cd03216	163	ABC_Carb_Monos_I This family represents the domain	99.96
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	99.96
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	99.96
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	99.96
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	99.96
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	99.96
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	99.96
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	99.96
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.96
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	99.96
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.96
PRK15064	530	ABC transporter ATP-binding protein; Provisional	99.96
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.96
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	99.96
COG4133	209	CcmA ABC-type transport system involved in cytochr	99.96
PRK10938	490	putative molybdenum transport ATP-binding protein	99.96
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	99.96
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	99.96
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	99.96
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	99.96
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.96
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	99.96
COG4619	223	ABC-type uncharacterized transport system, ATPase	99.96
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	99.96
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	99.96
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	99.96
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	99.96
PRK11147	635	ABC transporter ATPase component; Reviewed	99.96
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	99.96
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	99.96
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	99.96
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	99.96
KOG0058	716	consensus Peptide exporter, ABC superfamily [Intra	99.96
PRK11147	635	ABC transporter ATPase component; Reviewed	99.96
PRK03695	248	vitamin B12-transporter ATPase; Provisional	99.96
COG4586	325	ABC-type uncharacterized transport system, ATPase	99.96
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.96
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	99.96
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	99.96
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	99.96
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	99.96
PRK10535	648	macrolide transporter ATP-binding /permease protei	99.96
COG4172	534	ABC-type uncharacterized transport system, duplica	99.96
PRK13409	590	putative ATPase RIL; Provisional	99.95
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.95
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	99.95
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	99.95
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	99.95
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	99.95
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	99.95
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	99.95
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	99.95
PLN03211	659	ABC transporter G-25; Provisional	99.95
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	99.95
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	99.95
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	99.95
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	99.95
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	99.95
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.95
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	99.95
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	99.95
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	99.95
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	99.95
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	99.95
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	99.95
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	99.95
COG4559	259	ABC-type hemin transport system, ATPase component	99.95
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	99.95
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	99.95
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	99.95
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	99.95
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	99.95
PLN03073	718	ABC transporter F family; Provisional	99.95
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	99.95
COG4172	534	ABC-type uncharacterized transport system, duplica	99.95
PRK10522	547	multidrug transporter membrane component/ATP-bindi	99.94
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	99.94
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	99.94
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	99.94
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	99.94
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	99.94
KOG0057	591	consensus Mitochondrial Fe/S cluster exporter, ABC	99.94
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	99.94
COG0488	530	Uup ATPase components of ABC transporters with dup	99.94
COG4674	249	Uncharacterized ABC-type transport system, ATPase	99.94
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	99.94
COG4988	559	CydD ABC-type transport system involved in cytochr	99.94
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	99.94
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.94
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	99.94
COG4987	573	CydC ABC-type transport system involved in cytochr	99.94
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	99.94
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.93
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	99.93
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	99.93
PRK13409	590	putative ATPase RIL; Provisional	99.93
PLN03073	718	ABC transporter F family; Provisional	99.93
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	99.93
COG4136	213	ABC-type uncharacterized transport system, ATPase	99.93
KOG0055	1228	consensus Multidrug/pheromone exporter, ABC superf	99.93
COG0488	530	Uup ATPase components of ABC transporters with dup	99.93
KOG0059	885	consensus Lipid exporter ABCA1 and related protein	99.93
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	99.93
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	99.92
PLN03232	1495	ABC transporter C family member; Provisional	99.92
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	99.92
PLN03130	1622	ABC transporter C family member; Provisional	99.92
PTZ00243	1560	ABC transporter; Provisional	99.92
PF00005	137	ABC_tran: ABC transporter This structure is on hol	99.92
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	99.92
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.92
PLN03140	1470	ABC transporter G family member; Provisional	99.92
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.91
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	99.91
KOG0061	613	consensus Transporter, ABC superfamily (Breast can	99.9
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	99.9
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	99.9
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	99.9
PLN03232	1495	ABC transporter C family member; Provisional	99.9
PLN03140	1470	ABC transporter G family member; Provisional	99.9
PLN03130	1622	ABC transporter C family member; Provisional	99.9
KOG0056	790	consensus Heavy metal exporter HMT1, ABC superfami	99.89
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	99.88
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.88
PTZ00243	1560	ABC transporter; Provisional	99.87
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	99.86
COG4178	604	ABC-type uncharacterized transport system, permeas	99.85
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	99.84
COG5265	497	ATM1 ABC-type transport system involved in Fe-S cl	99.83
KOG0062	582	consensus ATPase component of ABC transporters wit	99.83
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.83
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	99.83
KOG0927	614	consensus Predicted transporter (ABC superfamily)	99.82
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	99.82
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	99.81
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	99.81
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.81
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.81
KOG0054	1381	consensus Multidrug resistance-associated protein/	99.79
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	99.79
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.77
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	99.77
KOG0060	659	consensus Long-chain acyl-CoA transporter, ABC sup	99.77
cd03276	198	ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein	99.76
COG4170	330	SapD ABC-type antimicrobial peptide transport syst	99.76
KOG2355	291	consensus Predicted ABC-type transport, ATPase com	99.75
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	99.73
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	99.73
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	99.73
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	99.71
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.69
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	99.68
KOG2702	323	consensus Predicted panthothenate kinase/uridine k	99.64
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	99.63
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	99.62
KOG0064	728	consensus Peroxisomal long-chain acyl-CoA transpor	99.61
KOG0062	582	consensus ATPase component of ABC transporters wit	99.6
COG2401	593	ABC-type ATPase fused to a predicted acetyltransfe	99.58
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	99.56
cd03277	213	ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein	99.56
COG3845	501	ABC-type uncharacterized transport systems, ATPase	99.56
cd03227	162	ABC_Class2 ABC-type Class 2 contains systems invol	99.55
cd03239	178	ABC_SMC_head The structural maintenance of chromos	99.55
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	99.52
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	99.51
KOG0066	807	consensus eIF2-interacting protein ABC50 (ABC supe	99.5
cd03285	222	ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS	99.49
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	99.48
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	99.47
KOG0065	1391	consensus Pleiotropic drug resistance proteins (PD	99.46
cd03241	276	ABC_RecN RecN ATPase involved in DNA repair; ABC (	99.45
COG1072	283	CoaA Panthothenate kinase [Coenzyme metabolism]	99.45
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	99.4
PTZ00301	210	uridine kinase; Provisional	99.4
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	99.39
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	99.37
TIGR00235	207	udk uridine kinase. Model contains a number of lon	99.35
PRK05439	311	pantothenate kinase; Provisional	99.34
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	99.32
PRK05480	209	uridine/cytidine kinase; Provisional	99.3
PRK00635	1809	excinuclease ABC subunit A; Provisional	99.28
PLN02796	347	D-glycerate 3-kinase	99.27
cd03242	270	ABC_RecF RecF is a recombinational DNA repair ATPa	99.26
COG0178	935	UvrA Excinuclease ATPase subunit [DNA replication,	99.26
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	99.23
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	99.2
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	99.18
cd03284	216	ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr	99.17
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	99.16
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	99.13
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.12
PLN02318	656	phosphoribulokinase/uridine kinase	99.12
PF02463	220	SMC_N: RecF/RecN/SMC N terminal domain; InterPro:	99.11
PLN03046	460	D-glycerate 3-kinase; Provisional	99.1
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	99.06
PRK08533	230	flagellar accessory protein FlaH; Reviewed	99.03
PLN02348	395	phosphoribulokinase	99.02
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	99.01
PRK00409	782	recombination and DNA strand exchange inhibitor pr	98.98
PRK06793	432	fliI flagellum-specific ATP synthase; Validated	98.98
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	98.97
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.96
KOG0063	592	consensus RNAse L inhibitor, ABC superfamily [RNA	98.95
PRK07429	327	phosphoribulokinase; Provisional	98.93
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	98.93
cd02029	277	PRK_like Phosphoribulokinase-like (PRK-like) is a	98.89
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	98.88
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	98.88
cd03286	218	ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS	98.84
TIGR00630	924	uvra excinuclease ABC, A subunit. This family is b	98.78
PRK00349	943	uvrA excinuclease ABC subunit A; Reviewed	98.76
PRK15453	290	phosphoribulokinase; Provisional	98.7
COG4240	300	Predicted kinase [General function prediction only	98.68
COG3910	233	Predicted ATPase [General function prediction only	98.67
cd01128	249	rho_factor Transcription termination factor rho is	98.65
smart00382	148	AAA ATPases associated with a variety of cellular	98.63
PRK13695	174	putative NTPase; Provisional	98.59
cd01124	187	KaiC KaiC is a circadian clock protein primarily f	98.58
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.54
PRK07667	193	uridine kinase; Provisional	98.5
PRK06067	234	flagellar accessory protein FlaH; Validated	98.5
PF13304	303	AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T	98.49
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	98.47
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	98.46
PF13555	62	AAA_29: P-loop containing region of AAA domain	98.46
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.46
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	98.45
PRK06002	450	fliI flagellum-specific ATP synthase; Validated	98.41
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.41
PRK06696	223	uridine kinase; Validated	98.36
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	98.34
TIGR02903	615	spore_lon_C ATP-dependent protease, Lon family. Me	98.32
TIGR00767	415	rho transcription termination factor Rho. Members	98.29
PRK07196	434	fliI flagellum-specific ATP synthase; Validated	98.24
PRK09825	176	idnK D-gluconate kinase; Provisional	98.23
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.23
PRK09862	506	putative ATP-dependent protease; Provisional	98.23
PHA02562	562	46 endonuclease subunit; Provisional	98.22
PRK10416	318	signal recognition particle-docking protein FtsY;	98.21
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	98.2
PRK08233	182	hypothetical protein; Provisional	98.18
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	98.18
cd01125	239	repA Hexameric Replicative Helicase RepA. RepA is	98.16
PRK07594	433	type III secretion system ATPase SsaN; Validated	98.15
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	98.13
TIGR00618	1042	sbcc exonuclease SbcC. This family is based on the	98.13
cd01136	326	ATPase_flagellum-secretory_path_III Flagellum-spec	98.12
PRK10246	1047	exonuclease subunit SbcC; Provisional	98.12
TIGR00634	563	recN DNA repair protein RecN. All proteins in this	98.1
PRK00300	205	gmk guanylate kinase; Provisional	98.1
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	98.09
PRK10869	553	recombination and repair protein; Provisional	98.07
PRK07721	438	fliI flagellum-specific ATP synthase; Validated	98.06
PRK08149	428	ATP synthase SpaL; Validated	98.05
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	98.02
KOG2878	282	consensus Predicted kinase [General function predi	98.02
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	98.02
PRK05399	854	DNA mismatch repair protein MutS; Provisional	98.01
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	98.01

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=3.4e-40  Score=271.47  Aligned_cols=167  Identities=19%  Similarity=0.246  Sum_probs=142.9

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ++|+++||+|.||+.+    +|++||++|++||+++|+||||||||||||+|++|..   |++|+ .++|+..       
T Consensus         1 ~mi~i~~l~K~fg~~~----VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~---~~~G~I~i~g~~~~~~~~~~   73 (240)
T COG1126           1 MMIEIKNLSKSFGDKE----VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEE---PDSGSITVDGEDVGDKKDIL   73 (240)
T ss_pred             CeEEEEeeeEEeCCeE----EecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcC---CCCceEEECCEeccchhhHH
Confidence            3799999999999865    6799999999999999999999999999999999998   99999 6777422       


Q ss_pred             --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                        +...|- + +..|.++.+ +|+.+|+..... ..+.+.+...+...++|+.+++.  .+.|+.+|||||+|||+||||
T Consensus        74 ~~R~~vGm-V-FQ~fnLFPH-lTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARA  150 (240)
T COG1126          74 KLRRKVGM-V-FQQFNLFPH-LTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARA  150 (240)
T ss_pred             HHHHhcCe-e-ccccccccc-chHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHH
Confidence              234564 3 334555544 799999987654 35667777778889999999987  678999999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |+.+|+++++||||++|||+...++.+.+.
T Consensus       151 LaM~P~vmLFDEPTSALDPElv~EVL~vm~  180 (240)
T COG1126         151 LAMDPKVMLFDEPTSALDPELVGEVLDVMK  180 (240)
T ss_pred             HcCCCCEEeecCCcccCCHHHHHHHHHHHH
Confidence            999999999999999999999999988875

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.3e-39  Score=274.51  Aligned_cols=167  Identities=16%  Similarity=0.204  Sum_probs=145.3

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCe
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDV  151 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~  151 (254)
                      .+++++++++.|+...    +|+|+||+|.+||+++|+||||||||||||+|+|+.+   |++|+ .++|+..   .++.
T Consensus         2 ~~l~i~~v~~~f~~~~----vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~---p~~G~V~~~g~~v~~p~~~~   74 (248)
T COG1116           2 ALLEIEGVSKSFGGVE----VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEK---PTSGEVLLDGRPVTGPGPDI   74 (248)
T ss_pred             ceEEEEeeEEEeCceE----EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCcccCCCCCCE
Confidence            5789999999999843    7799999999999999999999999999999999998   99999 6777542   4567


Q ss_pred             EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcE
Q 025366          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (254)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~v  229 (254)
                      +. +.|+...++.  +|+.+|+.+.....+...........++++.+++.  .+.++.+|||||||||+||||++.+|+|
T Consensus        75 ~~-vFQ~~~LlPW--~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~l  151 (248)
T COG1116          75 GY-VFQEDALLPW--LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKL  151 (248)
T ss_pred             EE-EeccCcccch--hhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCE
Confidence            76 5666554443  79999999988877766666667889999999986  7899999999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHhh
Q 025366          230 VIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       230 lIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |+|||||+.||+..+..+.+.+.
T Consensus       152 LLlDEPFgALDalTR~~lq~~l~  174 (248)
T COG1116         152 LLLDEPFGALDALTREELQDELL  174 (248)
T ss_pred             EEEcCCcchhhHHHHHHHHHHHH
Confidence            99999999999999998888764

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-38  Score=265.72  Aligned_cols=167  Identities=16%  Similarity=0.163  Sum_probs=148.8

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      ||+++||+|.|++..    |++++||+|++||+++++|||||||||+||||.+++.   |++|+ .++|+..        
T Consensus         1 MI~~~nvsk~y~~~~----av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLie---pt~G~I~i~g~~i~~~d~~~L   73 (309)
T COG1125           1 MIEFENVSKRYGNKK----AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIE---PTSGEILIDGEDISDLDPVEL   73 (309)
T ss_pred             CceeeeeehhcCCce----eeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccC---CCCceEEECCeecccCCHHHH
Confidence            589999999999755    7799999999999999999999999999999999998   99999 6777432        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC----CCCCCCCCChhhhhhHhhhhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~ia~al  223 (254)
                      +..+|+++.+.|.+..   +|+.+|+.......++.+.....+..++++.+++.    .++|+.+|||||+|||.+||||
T Consensus        74 Rr~IGYviQqigLFPh---~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL  150 (309)
T COG1125          74 RRKIGYVIQQIGLFPH---LTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL  150 (309)
T ss_pred             HHhhhhhhhhcccCCC---ccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence            4567987777775443   79999999999888887777778899999999986    5789999999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|+||++||||++|||..+.++.+.+.+
T Consensus       151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~  180 (309)
T COG1125         151 AADPPILLMDEPFGALDPITRKQLQEEIKE  180 (309)
T ss_pred             hcCCCeEeecCCccccChhhHHHHHHHHHH
Confidence            999999999999999999999999887753

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=100.00  E-value=9.6e-38  Score=261.37  Aligned_cols=174  Identities=16%  Similarity=0.139  Sum_probs=147.8

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (254)
                      |++++++||++.|+.......++++|||++.+||++||+|+||||||||+|+|+|+.+   |+.|+ .++|+...     
T Consensus         1 ~~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~---p~~G~I~~~G~~~~~~~~~   77 (252)
T COG1124           1 MTLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEK---PSSGSILLDGKPLAPKKRA   77 (252)
T ss_pred             CceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccC---CCCceEEECCcccCccccc
Confidence            4689999999999886544457799999999999999999999999999999999998   99999 78884322     


Q ss_pred             ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhh
Q 025366          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         .....+|++|.+.-.++..++.+.+.......|+...  ..+..++++.+++.   .++++.+|||||+||++||||
T Consensus        78 ~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~--~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARA  155 (252)
T COG1124          78 KAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKS--QQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARA  155 (252)
T ss_pred             hhhccceeEEecCCccccCcchhHHHHHhhhhccCCccHH--HHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHH
Confidence               2335678899887777777887777776666555432  34488999999997   578999999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+.+|++||+||||++||...+.+|++++.+
T Consensus       156 L~~~PklLIlDEptSaLD~siQa~IlnlL~~  186 (252)
T COG1124         156 LIPEPKLLILDEPTSALDVSVQAQILNLLLE  186 (252)
T ss_pred             hccCCCEEEecCchhhhcHHHHHHHHHHHHH
Confidence            9999999999999999999999999999854

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=100.00  E-value=1.2e-37  Score=251.53  Aligned_cols=168  Identities=17%  Similarity=0.116  Sum_probs=148.0

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC---------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV---------  146 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~---------  146 (254)
                      ||+++||+|.|++.+   .||+||||+|++||++-|+||||||||||+|+|++..+   |++|+ .+.+..         
T Consensus         1 mI~f~~V~k~Y~~g~---~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~---pt~G~i~~~~~dl~~l~~~~i   74 (223)
T COG2884           1 MIRFENVSKAYPGGR---EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER---PTRGKILVNGHDLSRLKGREI   74 (223)
T ss_pred             CeeehhhhhhcCCCc---hhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhc---CCCceEEECCeeccccccccc
Confidence            588999999998852   37899999999999999999999999999999999998   99999 565522         


Q ss_pred             --CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          147 --KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       147 --~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                        .+..+|. |.+|-..+..  .+++||..+..+..|.+......++.++|+.+++.  ....+++||||++||++||||
T Consensus        75 P~LRR~IGv-VFQD~rLL~~--~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARA  151 (223)
T COG2884          75 PFLRRQIGV-VFQDFRLLPD--RTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARA  151 (223)
T ss_pred             chhhheeee-Eeeecccccc--chHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHH
Confidence              1345675 6777666554  79999999999999998777788999999999987  456789999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|++||.||||..|||....+|+++|++
T Consensus       152 iV~~P~vLlADEPTGNLDp~~s~~im~lfee  182 (223)
T COG2884         152 IVNQPAVLLADEPTGNLDPDLSWEIMRLFEE  182 (223)
T ss_pred             HccCCCeEeecCCCCCCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999875

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=100.00  E-value=1.6e-37  Score=275.11  Aligned_cols=170  Identities=18%  Similarity=0.181  Sum_probs=146.9

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----CC
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PP  149 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~~  149 (254)
                      |.+|+++||+|.||+..    +++++||+|+.||+++|+||||||||||||+|+|+..   |++|+ .++|...    +.
T Consensus         1 M~~i~l~~v~K~yg~~~----~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~---~~~G~I~i~g~~vt~l~P~   73 (338)
T COG3839           1 MAELELKNVRKSFGSFE----VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEE---PTSGEILIDGRDVTDLPPE   73 (338)
T ss_pred             CcEEEEeeeEEEcCCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence            56899999999999843    6699999999999999999999999999999999998   99999 6777432    22


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                      +.+..+.++.|.++++ +++.+|+.+..+..+.+++....++.++.+.|++.  .+.++.+|||||+|||++||||+.+|
T Consensus        74 ~R~iamVFQ~yALyPh-mtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P  152 (338)
T COG3839          74 KRGIAMVFQNYALYPH-MTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKP  152 (338)
T ss_pred             HCCEEEEeCCccccCC-CcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCC
Confidence            2222233445555544 89999999999999998888889999999999987  68889999999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +++++|||++.||+..+..++..|.
T Consensus       153 ~v~L~DEPlSnLDa~lR~~mr~ei~  177 (338)
T COG3839         153 KVFLLDEPLSNLDAKLRVLMRSEIK  177 (338)
T ss_pred             CEEEecCchhHhhHHHHHHHHHHHH
Confidence            9999999999999999988887764

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=6.8e-37  Score=269.86  Aligned_cols=169  Identities=17%  Similarity=0.188  Sum_probs=145.1

Q ss_pred             cceEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366           75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (254)
                      +.+++++||+|.|+ +..    +|+||||++++|+++||+||||||||||+|+|+|++.   |++|+ .+.|...     
T Consensus         2 ~~~i~~~~l~k~~~~~~~----~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~---p~~G~i~i~G~~~~~~~~   74 (293)
T COG1131           2 IEVIEVRNLTKKYGGDKT----ALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLK---PTSGEILVLGYDVVKEPA   74 (293)
T ss_pred             CceeeecceEEEeCCCCE----EEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEEcCEeCccCHH
Confidence            56789999999999 544    7799999999999999999999999999999999998   99999 5666322     


Q ss_pred             --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhhhhh
Q 025366          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia~al  223 (254)
                        +...|+ +.++...+  +.+|+.|++.+....++.+...+...+.++++.+++..  +..+..||+|||||+.+|.||
T Consensus        75 ~~~~~igy-~~~~~~~~--~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL  151 (293)
T COG1131          75 KVRRRIGY-VPQEPSLY--PELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALAL  151 (293)
T ss_pred             HHHhheEE-EccCCCCC--ccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHH
Confidence              234676 55554432  33899999999988888755555678899999999986  677899999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|+++||||||+|||+..+.+++++|..
T Consensus       152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~  181 (293)
T COG1131         152 LHDPELLILDEPTSGLDPESRREIWELLRE  181 (293)
T ss_pred             hcCCCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999853

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=100.00  E-value=6.8e-37  Score=257.16  Aligned_cols=171  Identities=16%  Similarity=0.136  Sum_probs=141.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      ++++++|+|.|+.....+.+|+++||+|++||+++|+|||||||||||++|.|+.+   |++|+ .+.|...        
T Consensus         1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~---pt~G~v~i~g~d~~~l~~~~~   77 (226)
T COG1136           1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSEKEL   77 (226)
T ss_pred             CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEcCcCCHHHH
Confidence            46789999999765444668899999999999999999999999999999999998   99999 6776211        


Q ss_pred             ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC---CCCCCCCChhhhhhHhhh
Q 025366          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~ia  220 (254)
                          ....|+ |.|+...++.  +++.||+.......+............+++.+++..   +.++.+|||||+|||+||
T Consensus        78 ~~~R~~~iGf-vFQ~~nLl~~--ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIA  154 (226)
T COG1136          78 AKLRRKKIGF-VFQNFNLLPD--LTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIA  154 (226)
T ss_pred             HHHHHHhEEE-ECccCCCCCC--CCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHH
Confidence                345676 6666555544  899999988776666544334566778888888862   366889999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||+.+|++|+.||||..||..+.+++.++|.+
T Consensus       155 RAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~  187 (226)
T COG1136         155 RALINNPKIILADEPTGNLDSKTAKEVLELLRE  187 (226)
T ss_pred             HHHhcCCCeEEeeCccccCChHHHHHHHHHHHH
Confidence            999999999999999999999999999999854

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=8.9e-37  Score=260.02  Aligned_cols=170  Identities=15%  Similarity=0.191  Sum_probs=137.2

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----C
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----P  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~  148 (254)
                      +++|+++|+++.|++..    +|+||||++++|++++|+||||||||||+|+|+|+++   |++|+ .+.+...     .
T Consensus         2 ~~~i~v~nl~v~y~~~~----vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~---p~~G~i~~~g~~~~~~~~~   74 (254)
T COG1121           2 MPMIEVENLTVSYGNRP----VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLK---PSSGEIKIFGKPVRKRRKR   74 (254)
T ss_pred             CcEEEEeeeEEEECCEe----eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCcceEEEccccccccccC
Confidence            67899999999999742    6799999999999999999999999999999999998   99999 5555321     1


Q ss_pred             CCeEEEeeCCC-CCCCCcCCChhhcHHHHHH-HcCC---CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          149 PDVATVLPMDG-FHLYLSQLDAMEDPKEAHA-RRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       149 ~~~g~~i~~~~-~~~~~~~l~~~e~~~~~~~-~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                      ..+|+ ++|.. ++... .+++.+-....+. ..++   +...+.+.+.++|+.+++.  .+..+.+|||||+|||.+||
T Consensus        75 ~~IgY-VPQ~~~~d~~f-P~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lAR  152 (254)
T COG1121          75 LRIGY-VPQKSSVDRSF-PITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLAR  152 (254)
T ss_pred             CeEEE-cCcccccCCCC-CcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHH
Confidence            34666 66643 22222 2677766544321 1222   3344567889999999987  67889999999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+.+|++|+|||||+++|+..+..+.++|++
T Consensus       153 AL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~  184 (254)
T COG1121         153 ALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKE  184 (254)
T ss_pred             HhccCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999875

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=6.2e-37  Score=263.94  Aligned_cols=171  Identities=16%  Similarity=0.138  Sum_probs=147.7

Q ss_pred             eEEEecceeeccc-ccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           77 VVEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~-~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ||++++|+|.|.. ....+.|++||||+|++|+|+||+|.||||||||+|+|.++.+   |++|+ .++|+..       
T Consensus         1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~---PtsG~v~v~G~di~~l~~~~   77 (339)
T COG1135           1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLER---PTSGSVFVDGQDLTALSEAE   77 (339)
T ss_pred             CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCC---CCCceEEEcCEecccCChHH
Confidence            5899999999987 3334668999999999999999999999999999999999998   99999 6777322       


Q ss_pred             ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                          +..+|- |++.-..+..  .|+.+|+.+..+..|+++.....++.++++.+++.  .+.|+.+|||||||||+|||
T Consensus        78 Lr~~R~~IGM-IFQhFnLLss--rTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIAR  154 (339)
T COG1135          78 LRQLRQKIGM-IFQHFNLLSS--RTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIAR  154 (339)
T ss_pred             HHHHHhhccE-Eecccccccc--chHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHH
Confidence                345564 5444333332  58999999999999988888888999999999987  57899999999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+.+|+||+.||+|+.|||...+.|.+++..
T Consensus       155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~  186 (339)
T COG1135         155 ALANNPKILLCDEATSALDPETTQSILELLKD  186 (339)
T ss_pred             HHhcCCCEEEecCccccCChHHHHHHHHHHHH
Confidence            99999999999999999999999999998864

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=100.00  E-value=7.7e-37  Score=272.06  Aligned_cols=168  Identities=15%  Similarity=0.186  Sum_probs=141.6

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      ++.++++||+|.|++..    +++|+||+|++||+++|+||||||||||||+|+|+..   |++|+ .++|+..      
T Consensus         3 ~~~l~i~~v~k~yg~~~----av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~---p~~G~I~l~G~~i~~lpp~   75 (352)
T COG3842           3 KPALEIRNVSKSFGDFT----AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQ---PSSGEILLDGEDITDVPPE   75 (352)
T ss_pred             CceEEEEeeeeecCCee----EEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChh
Confidence            56899999999999754    7899999999999999999999999999999999997   99999 6777432      


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                      +..+|. |.+ +|.++.+ +++.+|+.|..+..+. .......++.++++.+++.  .++++.+|||||+|||++||||+
T Consensus        76 kR~ig~-VFQ-~YALFPH-ltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~  152 (352)
T COG3842          76 KRPIGM-VFQ-SYALFPH-MTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALV  152 (352)
T ss_pred             hcccce-eec-CcccCCC-CcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhh
Confidence            234454 444 4555544 8999999998884443 3344567889999988887  67899999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      .+|+||+||||++.||...+.+++.-+.
T Consensus       153 ~~P~vLLLDEPlSaLD~kLR~~mr~Elk  180 (352)
T COG3842         153 PEPKVLLLDEPLSALDAKLREQMRKELK  180 (352)
T ss_pred             cCcchhhhcCcccchhHHHHHHHHHHHH
Confidence            9999999999999999999888887664

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=2e-36  Score=252.77  Aligned_cols=169  Identities=18%  Similarity=0.219  Sum_probs=142.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      .++|++++|++.||++.    +++|+||+|++||+++|+||||||||||+|+|.|+++   |++|+ .++|...      
T Consensus         6 ~~~I~vr~v~~~fG~~~----Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~---P~~GeI~i~G~~i~~ls~~   78 (263)
T COG1127           6 EPLIEVRGVTKSFGDRV----ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLR---PDKGEILIDGEDIPQLSEE   78 (263)
T ss_pred             cceEEEeeeeeecCCEE----EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCC---CCCCeEEEcCcchhccCHH
Confidence            46899999999999954    5699999999999999999999999999999999998   99999 6676432      


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-CCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~  218 (254)
                           ....|. +.|.|-.+..  +++.||+.+..+.+. +++....+.+..-++.+++.   .+.++.+|||||++|++
T Consensus        79 ~~~~ir~r~Gv-lFQ~gALFss--ltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRva  155 (263)
T COG1127          79 ELYEIRKRMGV-LFQQGALFSS--LTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVA  155 (263)
T ss_pred             HHHHHHhheeE-Eeeccccccc--cchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHH
Confidence                 234675 6777765544  899999998776654 46655556667777778876   46899999999999999


Q ss_pred             hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|||++.+|++|++||||+||||.....+-++|.+
T Consensus       156 LARAialdPell~~DEPtsGLDPI~a~~~~~LI~~  190 (263)
T COG1127         156 LARAIALDPELLFLDEPTSGLDPISAGVIDELIRE  190 (263)
T ss_pred             HHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHH
Confidence            99999999999999999999999999888888753

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=100.00  E-value=4.4e-36  Score=244.52  Aligned_cols=167  Identities=17%  Similarity=0.184  Sum_probs=141.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC-------CC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------KP  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~-------~~  148 (254)
                      |+++.+++|+|++.   +.|++||||++++|+|+||+|||||||||+||+|++++.   |++|+ .++|-.       .+
T Consensus         1 Ml~v~~l~K~y~~~---v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~---P~~G~v~idg~d~~~~p~~vr   74 (245)
T COG4555           1 MLEVTDLTKSYGSK---VQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLI---PDSGKVTIDGVDTVRDPSFVR   74 (245)
T ss_pred             CeeeeehhhhccCH---HhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhcc---CCCceEEEeecccccChHHHh
Confidence            58999999999983   338899999999999999999999999999999999998   99999 666611       13


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                      ..+|...  ...-++ ..+|+.||+.+..+.+++.......+..++.+.|++.  .+..+..||.||||||+|||||+++
T Consensus        75 r~IGVl~--~e~glY-~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~  151 (245)
T COG4555          75 RKIGVLF--GERGLY-ARLTARENLKYFARLNGLSRKEIKARIAELSKRLQLLEYLDRRVGEFSTGMKQKVAIARALVHD  151 (245)
T ss_pred             hhcceec--CCcChh-hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHhChHHHHHHHHhhhchhhHHHHHHHHHHhcC
Confidence            4456432  222222 2389999999999999987666677788888888876  5788899999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |+++|+|||++|||...++.+.+++.
T Consensus       152 P~i~vlDEP~sGLDi~~~r~~~dfi~  177 (245)
T COG4555         152 PSILVLDEPTSGLDIRTRRKFHDFIK  177 (245)
T ss_pred             CCeEEEcCCCCCccHHHHHHHHHHHH
Confidence            99999999999999999999998875

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=100.00  E-value=1.9e-35  Score=252.88  Aligned_cols=167  Identities=17%  Similarity=0.166  Sum_probs=134.8

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      +++++||++.|++..    +++|+||++++|++++|+||||||||||||+|+|+++   |.+|+ .++|...        
T Consensus         2 ~L~~~~ls~~y~~~~----il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~---p~~G~V~l~g~~i~~~~~kel   74 (258)
T COG1120           2 MLEVENLSFGYGGKP----ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLK---PKSGEVLLDGKDIASLSPKEL   74 (258)
T ss_pred             eeEEEEEEEEECCee----EEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCEEEECCCchhhcCHHHH
Confidence            689999999999743    5699999999999999999999999999999999998   99999 6777532        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCCC---CCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAP---WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~~---~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                      ....++ +++.....+  .+++.|.+...+.- .+.+   ...|.+.+.++++.+++.  .++.+.+||||||||+.||+
T Consensus        75 Ak~ia~-vpQ~~~~~~--~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iAr  151 (258)
T COG1120          75 AKKLAY-VPQSPSAPF--GLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIAR  151 (258)
T ss_pred             hhhEEE-eccCCCCCC--CcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHH
Confidence            224454 676653332  26777766654432 1222   233445677888888876  57789999999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+.+|++|+|||||+.||..++.++++++.+
T Consensus       152 ALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~  183 (258)
T COG1120         152 ALAQETPILLLDEPTSHLDIAHQIEVLELLRD  183 (258)
T ss_pred             HHhcCCCEEEeCCCccccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998853

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-35  Score=245.06  Aligned_cols=168  Identities=18%  Similarity=0.206  Sum_probs=138.8

Q ss_pred             ceEEEecceeec-ccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           76 PVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y-~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      .+|+++||++.| ++..    +|++|||+|++||+|+|+|+||||||||||+|+|+..   |+.|+ .++|...      
T Consensus         2 ~~i~~~nl~k~yp~~~~----aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d---~t~G~i~~~g~~i~~~~~k   74 (258)
T COG3638           2 MMIEVKNLSKTYPGGHQ----ALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD---PTSGEILFNGVQITKLKGK   74 (258)
T ss_pred             ceEEEeeeeeecCCCce----eeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccC---CCcceEEecccchhccchH
Confidence            479999999999 4433    7799999999999999999999999999999999997   99999 5555211      


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHH--------HHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEA--------HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHG  212 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~--------~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G  212 (254)
                           +.+.|. |.+....+.+  +++.+|....        ...++++...+.....++|+.+++.  ...+..+||||
T Consensus        75 ~lr~~r~~iGm-IfQ~~nLv~r--~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGG  151 (258)
T COG3638          75 ELRKLRRDIGM-IFQQFNLVPR--LSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGG  151 (258)
T ss_pred             HHHHHHHhcee-EeccCCcccc--cHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcc
Confidence                 345675 6665544444  6788877543        3356666666777889999999987  34567899999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+|||+|||||+.+|++|+.|||++.|||.+.+.++++|..
T Consensus       152 QQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~  192 (258)
T COG3638         152 QQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKD  192 (258)
T ss_pred             hhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999998853

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=100.00  E-value=9.6e-35  Score=257.91  Aligned_cols=169  Identities=16%  Similarity=0.121  Sum_probs=137.5

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      .++++++||+|.|++..    +|+|+||+|++|+++||+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus         5 ~~~i~i~~l~k~~~~~~----~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~---p~~G~v~i~G~~~~~~~~~   77 (306)
T PRK13537          5 VAPIDFRNVEKRYGDKL----VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH---PDAGSISLCGEPVPSRARH   77 (306)
T ss_pred             CceEEEEeEEEEECCeE----EEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEecccchHH
Confidence            35799999999998743    7799999999999999999999999999999999998   99999 6666422      


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                       ....|+ +.++...+  +.+++.+++.+....++...........++++.+++.  .+..+..||+||+||+++|+||+
T Consensus        78 ~~~~ig~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~aL~  154 (306)
T PRK13537         78 ARQRVGV-VPQFDNLD--PDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGELSGGMKRRLTLARALV  154 (306)
T ss_pred             HHhcEEE-EeccCcCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCchhhCCHHHHHHHHHHHHHh
Confidence             234565 55554332  2378999988766555544333334567788888775  46778899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|++|||||||++||+.+++.+++++.+
T Consensus       155 ~~P~lllLDEPt~gLD~~~~~~l~~~l~~  183 (306)
T PRK13537        155 NDPDVLVLDEPTTGLDPQARHLMWERLRS  183 (306)
T ss_pred             CCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998864

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=100.00  E-value=1.5e-34  Score=259.79  Aligned_cols=169  Identities=15%  Similarity=0.116  Sum_probs=136.8

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      +++|+++||+|.|++..    +|+|+||+|++|+++||+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus        39 ~~~i~i~nl~k~y~~~~----~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~---p~~G~i~i~G~~~~~~~~~  111 (340)
T PRK13536         39 TVAIDLAGVSKSYGDKA----VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTS---PDAGKITVLGVPVPARARL  111 (340)
T ss_pred             ceeEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCceEEEECCEECCcchHH
Confidence            56899999999998743    6799999999999999999999999999999999998   99999 6666422      


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                       ....|+ +.++...+.  .+++.+++.+....++...........++++.+++.  .+.++..||+||+||+++|+||+
T Consensus       112 ~~~~ig~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~  188 (340)
T PRK13536        112 ARARIGV-VPQFDNLDL--EFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALI  188 (340)
T ss_pred             HhccEEE-EeCCccCCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHh
Confidence             233565 555533222  378889887655555543222334556778888776  57788899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|++|||||||++||+..+++++++|.+
T Consensus       189 ~~P~lLiLDEPt~gLD~~~r~~l~~~l~~  217 (340)
T PRK13536        189 NDPQLLILDEPTTGLDPHARHLIWERLRS  217 (340)
T ss_pred             cCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999864

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-34  Score=261.64  Aligned_cols=169  Identities=15%  Similarity=0.110  Sum_probs=137.8

Q ss_pred             cceEEEecceeec-ccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366           75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y-~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (254)
                      |.+|+++||++.| ++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...     
T Consensus         1 m~~l~i~~l~~~~~~~~~----~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~   73 (356)
T PRK11650          1 MAGLKLQAVRKSYDGKTQ----VIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLER---ITSGEIWIGGRVVNELEP   73 (356)
T ss_pred             CCEEEEEeEEEEeCCCCE----EEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence            4579999999999 6532    6799999999999999999999999999999999997   99999 6776422     


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                       ....|. +.++...++  .+++.+|+.+.....+.........+.++++.+++.  .+.++.+|||||+|||+|||||+
T Consensus        74 ~~r~ig~-v~Q~~~lfp--~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~  150 (356)
T PRK11650         74 ADRDIAM-VFQNYALYP--HMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIV  150 (356)
T ss_pred             HHCCEEE-EeCCccccC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHh
Confidence             123554 566543332  379999998876554443333345677888888876  56788999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|++|||||||++||+..++.+.+.+.+
T Consensus       151 ~~P~llLLDEP~s~LD~~~r~~l~~~l~~  179 (356)
T PRK11650        151 REPAVFLFDEPLSNLDAKLRVQMRLEIQR  179 (356)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999988753

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.4e-34  Score=246.56  Aligned_cols=170  Identities=15%  Similarity=0.123  Sum_probs=145.7

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC--------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------  146 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~--------  146 (254)
                      ++++++++++.|++.   ..+++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|..        
T Consensus         2 ~~i~~~~l~~~y~~~---~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~---p~~G~v~~~g~~~~~~~~~~   75 (235)
T COG1122           2 RMIEAENLSFRYPGR---KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLK---PTSGEVLVDGLDTSSEKSLL   75 (235)
T ss_pred             ceEEEEEEEEEcCCC---ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCc---CCCCEEEECCeeccchhhHH
Confidence            578999999999875   226799999999999999999999999999999999998   99999 566643        


Q ss_pred             -CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          147 -KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       147 -~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                       ....+|.+++..+..+..  -++.+++.|...+.|++......++.++++.+++.  .+..+..|||||+|||+||.+|
T Consensus        76 ~~~~~vG~VfQnpd~q~~~--~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vL  153 (235)
T COG1122          76 ELRQKVGLVFQNPDDQLFG--PTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVL  153 (235)
T ss_pred             HhhcceEEEEECccccccc--CcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHH
Confidence             145578744444444443  48899999999999987766777889999998886  5788889999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++|||||||++||+..++++.+++.+
T Consensus       154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~  183 (235)
T COG1122         154 AMGPEILLLDEPTAGLDPKGRRELLELLKK  183 (235)
T ss_pred             HcCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998864

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=100.00  E-value=2.7e-34  Score=258.04  Aligned_cols=171  Identities=17%  Similarity=0.144  Sum_probs=137.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      ||+++||++.|+.......+|+|+||++++|+++||+||||||||||+|+|+|+++   |++|+ .++|...        
T Consensus         1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~---p~~G~I~i~G~~i~~~~~~~l   77 (343)
T TIGR02314         1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTSGSVIVDGQDLTTLSNSEL   77 (343)
T ss_pred             CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHHHH
Confidence            48999999999632112336799999999999999999999999999999999998   99999 6676422        


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         +...|. +.++...+.  ..++.+|+.+.....+.+......++.++++.+++.  .+.++.+|||||+||++||||
T Consensus        78 ~~~r~~Ig~-v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARA  154 (343)
T TIGR02314        78 TKARRQIGM-IFQHFNLLS--SRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARA  154 (343)
T ss_pred             HHHhcCEEE-EECCccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence               123554 555543332  268899988766555544333455678889988886  467889999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+.+|++||+||||++||+..+..+.+++.+
T Consensus       155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~  185 (343)
T TIGR02314       155 LASNPKVLLCDEATSALDPATTQSILELLKE  185 (343)
T ss_pred             HHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998864

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-34  Score=258.86  Aligned_cols=170  Identities=17%  Similarity=0.181  Sum_probs=139.6

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (254)
                      .|++|+++||++.|++..    +++++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...     
T Consensus         3 ~~~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~~   75 (351)
T PRK11432          3 QKNFVVLKNITKRFGSNT----VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK---PTEGQIFIDGEDVTHRSI   75 (351)
T ss_pred             CCcEEEEEeEEEEECCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC---CCceEEEECCEECCCCCH
Confidence            367899999999998633    6799999999999999999999999999999999998   99999 6776432     


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                       ....|. +.++.. ++. .+++.+|+.+..+..+........++.++++.+++.  .+.++.+|||||+||+++||||+
T Consensus        76 ~~r~ig~-vfQ~~~-lfp-~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~  152 (351)
T PRK11432         76 QQRDICM-VFQSYA-LFP-HMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALI  152 (351)
T ss_pred             HHCCEEE-EeCCcc-cCC-CCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence             134454 555543 332 279999998876555544333456778888888876  46788999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|++||||||+++||+..++++.+.|.+
T Consensus       153 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  181 (351)
T PRK11432        153 LKPKVLLFDEPLSNLDANLRRSMREKIRE  181 (351)
T ss_pred             cCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999988753

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=3.1e-34  Score=258.97  Aligned_cols=169  Identities=15%  Similarity=0.151  Sum_probs=139.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |++|+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|+..      
T Consensus         2 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~   74 (353)
T TIGR03265         2 SPYLSIDNIRKRFGAFT----ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER---QTAGTIYQGGRDITRLPPQ   74 (353)
T ss_pred             CcEEEEEEEEEEeCCeE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHH
Confidence            56899999999998743    6699999999999999999999999999999999997   99999 6777432      


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~  225 (254)
                      ....|. +.++. .++. .+++.+|+.+.....+.........+.++++.+++.  .+.++.+|||||+||+++||||+.
T Consensus        75 ~r~ig~-v~Q~~-~lfp-~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~  151 (353)
T TIGR03265        75 KRDYGI-VFQSY-ALFP-NLTVADNIAYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALAT  151 (353)
T ss_pred             HCCEEE-EeCCc-ccCC-CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence            123454 55554 3332 279999998876655544334456778899988886  477889999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|++||||||+++||+..++++++.+.+
T Consensus       152 ~P~llLLDEP~s~LD~~~r~~l~~~L~~  179 (353)
T TIGR03265       152 SPGLLLLDEPLSALDARVREHLRTEIRQ  179 (353)
T ss_pred             CCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999988753

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-34  Score=249.63  Aligned_cols=166  Identities=17%  Similarity=0.270  Sum_probs=139.9

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC---------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV---------  146 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~---------  146 (254)
                      +|.++++++.|++..    +++||+++|+.||.++|+||||||||||||+|+|++.   |+.|. .++++.         
T Consensus         2 ~i~i~~~~~~~~~~~----a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~---p~~G~I~~~~~~l~D~~~~~~   74 (345)
T COG1118           2 SIRINNVKKRFGAFG----ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLET---PDAGRIRLNGRVLFDVSNLAV   74 (345)
T ss_pred             ceeehhhhhhccccc----ccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCC---CCCceEEECCEeccchhccch
Confidence            488999999999976    8899999999999999999999999999999999998   99999 566651         


Q ss_pred             CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-C-CCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-P-WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       147 ~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~-~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                      ....+|. +.++ |.++.+ +++.+|+.|..+.... + ......++.++|+.+.+.  .+.|+.+|||||+|||++|||
T Consensus        75 ~~R~VGf-vFQ~-YALF~H-mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARA  151 (345)
T COG1118          75 RDRKVGF-VFQH-YALFPH-MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARA  151 (345)
T ss_pred             hhcceeE-EEec-hhhccc-chHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHH
Confidence            1234665 4444 444444 8999999998765532 2 345566778888888877  689999999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |+.+|++|+||||+..||...++++...+.
T Consensus       152 LA~eP~vLLLDEPf~ALDa~vr~~lr~wLr  181 (345)
T COG1118         152 LAVEPKVLLLDEPFGALDAKVRKELRRWLR  181 (345)
T ss_pred             hhcCCCeEeecCCchhhhHHHHHHHHHHHH
Confidence            999999999999999999999999988774

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=100.00  E-value=4.5e-34  Score=241.38  Aligned_cols=169  Identities=17%  Similarity=0.160  Sum_probs=132.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      |++++|+++.|++..+.  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus         1 ~l~~~~l~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   75 (216)
T TIGR00960         1 MIRFEQVSKAYPGGHQP--ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEK---PTRGKIRFNGQDLTRLRGREI   75 (216)
T ss_pred             CeEEEEEEEEecCCCee--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEehhhcChhHH
Confidence            47899999999652112  5699999999999999999999999999999999997   99999 6666422        


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         ....++ +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+|
T Consensus        76 ~~~~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lara  152 (216)
T TIGR00960        76 PFLRRHIGM-VFQDHRLLS--DRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARA  152 (216)
T ss_pred             HHHHHhceE-EecCccccc--cccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHH
Confidence               112454 555543222  268888887654443432222345667888888875  356778999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|++||+||||++||+..++.+.+++.+
T Consensus       153 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~  183 (216)
T TIGR00960       153 IVHKPPLLLADEPTGNLDPELSRDIMRLFEE  183 (216)
T ss_pred             HhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998854

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=5.1e-34  Score=234.42  Aligned_cols=170  Identities=16%  Similarity=0.151  Sum_probs=134.9

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---CCce-ecCCCCC---
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK---  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p---~~G~-~~~~~~~---  147 (254)
                      ++.+++++|++.|++.+    ||++||+.|+++++++|+||||||||||||++..+.. +.|   ..|+ .++|+..   
T Consensus         5 ~~~~~~~~l~~yYg~~~----aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmnd-l~~~~r~~G~v~~~g~ni~~~   79 (253)
T COG1117           5 IPAIEVRDLNLYYGDKH----ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMND-LIPGARVEGEVLLDGKNIYDP   79 (253)
T ss_pred             cceeEecceeEEECchh----hhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcc-cCcCceEEEEEEECCeeccCC
Confidence            46799999999999866    8899999999999999999999999999999999875 112   2366 4565322   


Q ss_pred             -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (254)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (254)
                             +..+|- +.+....++   +++++|+.+..+..|+....-.+.+++.|+...+.      .+.....|||||+
T Consensus        80 ~~d~~~lRr~vGM-VFQkPnPFp---~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQ  155 (253)
T COG1117          80 KVDVVELRRRVGM-VFQKPNPFP---MSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQ  155 (253)
T ss_pred             CCCHHHHHHHhee-eccCCCCCC---chHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHH
Confidence                   234564 555554443   79999999999998875433344455666655543      3456678999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||++|||||+.+|+||+|||||++|||.+..+|-+++.+
T Consensus       156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~e  194 (253)
T COG1117         156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE  194 (253)
T ss_pred             HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHH
Confidence            999999999999999999999999999999999998865

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=100.00  E-value=5.8e-34  Score=258.70  Aligned_cols=171  Identities=19%  Similarity=0.190  Sum_probs=138.9

Q ss_pred             CCcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----
Q 025366           73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----  147 (254)
Q Consensus        73 ~~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----  147 (254)
                      .++++|+++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...    
T Consensus        10 ~~~~~L~l~~l~~~~~~~~----~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~---p~~G~I~~~g~~i~~~~   82 (375)
T PRK09452         10 SLSPLVELRGISKSFDGKE----VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFET---PDSGRIMLDGQDITHVP   82 (375)
T ss_pred             cCCceEEEEEEEEEECCeE----EEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCC
Confidence            3567899999999998733    6699999999999999999999999999999999997   99999 6777432    


Q ss_pred             --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                        ....|. +.++...++  .+++.+|+.+.....+.+.......+.++++.+++.  .+.++.+|||||+|||++||||
T Consensus        83 ~~~r~ig~-vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL  159 (375)
T PRK09452         83 AENRHVNT-VFQSYALFP--HMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAV  159 (375)
T ss_pred             HHHCCEEE-EecCcccCC--CCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence              123454 555543322  379999998866544443332345667888888876  4778899999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++||||||+++||+..++.+.+.|.+
T Consensus       160 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~  189 (375)
T PRK09452        160 VNKPKVLLLDESLSALDYKLRKQMQNELKA  189 (375)
T ss_pred             hcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999988853

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=100.00  E-value=8.3e-34  Score=257.76  Aligned_cols=169  Identities=14%  Similarity=0.089  Sum_probs=136.2

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |++|+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus         1 m~~l~i~~l~~~~~~~~----vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~---p~~G~I~~~g~~i~~~~~~   73 (369)
T PRK11000          1 MASVTLRNVTKAYGDVV----ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED---ITSGDLFIGEKRMNDVPPA   73 (369)
T ss_pred             CCEEEEEEEEEEeCCeE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCHh
Confidence            45799999999998633    6699999999999999999999999999999999997   99999 5666322      


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~  225 (254)
                      ....++ +.++...++  .+++.+++.+.....+.........+.++++.+++.  .+.++.+||+||+||+++|+||+.
T Consensus        74 ~~~i~~-v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~  150 (369)
T PRK11000         74 ERGVGM-VFQSYALYP--HLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA  150 (369)
T ss_pred             HCCEEE-EeCCcccCC--CCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhc
Confidence            123454 566543322  378999988765544443323345677888888886  467788999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|++|||||||++||+..++.+.++|.+
T Consensus       151 ~P~lLLLDEPts~LD~~~~~~l~~~L~~  178 (369)
T PRK11000        151 EPSVFLLDEPLSNLDAALRVQMRIEISR  178 (369)
T ss_pred             CCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999888753

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=100.00  E-value=1.1e-33  Score=250.80  Aligned_cols=167  Identities=16%  Similarity=0.127  Sum_probs=132.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------C
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~  148 (254)
                      +++++||++.|++..    +++++||++++|+++||+||||||||||+++|+|+++   |++|+ .++|...       .
T Consensus         4 ~i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   76 (303)
T TIGR01288         4 AIDLVGVSKSYGDKV----VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMIS---PDRGKITVLGEPVPSRARLAR   76 (303)
T ss_pred             EEEEEeEEEEeCCeE----EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECcccHHHHh
Confidence            689999999998733    6799999999999999999999999999999999997   99999 5666322       2


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                      ...|+ +.++...+  +.+++.+++.+.....+.........+.++++.+++.  .+.++..||+||+||+++|+|++.+
T Consensus        77 ~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~  153 (303)
T TIGR01288        77 VAIGV-VPQFDNLD--PEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALIND  153 (303)
T ss_pred             hcEEE-EeccccCC--cCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence            23454 55554322  2368888887544434432222233456778877775  3677889999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++|||||||++||+..++.+.+++.+
T Consensus       154 p~lllLDEPt~gLD~~~~~~l~~~l~~  180 (303)
T TIGR01288       154 PQLLILDEPTTGLDPHARHLIWERLRS  180 (303)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998854

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=100.00  E-value=8.2e-34  Score=239.30  Aligned_cols=166  Identities=18%  Similarity=0.240  Sum_probs=128.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (254)
                      ++++|+++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      ...
T Consensus         1 l~~~~l~~~~~~~--~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~   73 (213)
T cd03259           1 LELKGLSKTYGSV--R--ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLER---PDSGEILIDGRDVTGVPPERRN   73 (213)
T ss_pred             CeeeeeEEEeCCe--e--eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcCcCchhhcc
Confidence            4688999999863  2  5699999999999999999999999999999999997   99999 5666422      122


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      .++ +.++...+.  .+++.+++.+.....+.........+.++++.+++..  +..+..||+||+||+++|++|+.+|+
T Consensus        74 i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~  150 (213)
T cd03259          74 IGM-VFQDYALFP--HLTVAENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPS  150 (213)
T ss_pred             EEE-EcCchhhcc--CCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCC
Confidence            343 555433222  2578888765443333222222345677888887753  56778999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+||||++||+.+++.+.+++.+
T Consensus       151 ~lllDEPt~~LD~~~~~~l~~~l~~  175 (213)
T cd03259         151 LLLLDEPLSALDAKLREELREELKE  175 (213)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998854

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=100.00  E-value=8.7e-34  Score=239.87  Aligned_cols=170  Identities=18%  Similarity=0.184  Sum_probs=129.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC--------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~--------  148 (254)
                      |+++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....        
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   77 (218)
T cd03255           1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVRVDGTDISKLSEKELA   77 (218)
T ss_pred             CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC---CCceeEEECCEehhhcchhHHH
Confidence            4688999999752100126799999999999999999999999999999999997   99999 56663211        


Q ss_pred             ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                          ...++ +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+|
T Consensus        78 ~~~~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a  154 (218)
T cd03255          78 AFRRRHIGF-VFQSFNLLP--DLTALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARA  154 (218)
T ss_pred             HHHhhcEEE-EeeccccCC--CCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHH
Confidence                12444 455433222  257888877654333332212234567888888876  356778999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|++|||||||++||+..++.+.+++.+
T Consensus       155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~  185 (218)
T cd03255         155 LANDPKIILADEPTGNLDSETGKEVMELLRE  185 (218)
T ss_pred             HccCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998864

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.9e-33  Score=240.32  Aligned_cols=172  Identities=13%  Similarity=0.073  Sum_probs=132.9

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....      
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~   80 (233)
T PRK11629          4 ILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT---PTSGDVIFNGQPMSKLSSAA   80 (233)
T ss_pred             ceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCCHHH
Confidence            479999999999752111226799999999999999999999999999999999997   99999 66663221      


Q ss_pred             ------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       149 ------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia  220 (254)
                            ...++ +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|
T Consensus        81 ~~~~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la  157 (233)
T PRK11629         81 KAELRNQKLGF-IYQFHHLLP--DFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIA  157 (233)
T ss_pred             HHHHHhccEEE-EecCcccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHH
Confidence                  23454 555543222  268888887643323332222334567888888875  3566789999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       158 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  190 (233)
T PRK11629        158 RALVNNPRLVLADEPTGNLDARNADSIFQLLGE  190 (233)
T ss_pred             HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998854

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=100.00  E-value=1.2e-33  Score=239.44  Aligned_cols=166  Identities=16%  Similarity=0.157  Sum_probs=131.1

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP  149 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~  149 (254)
                      |+++|+++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...       ..
T Consensus         1 i~~~~~~~~~~~~--~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (220)
T cd03265           1 IEVENLVKKYGDF--E--AVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK---PTSGRATVAGHDVVREPREVRR   73 (220)
T ss_pred             CEEEEEEEEECCE--E--eeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecCcChHHHhh
Confidence            4789999999863  3  5699999999999999999999999999999999997   99999 5666322       11


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                      ..++ +.++....  +.+++.+++.+.....+.........+.++++.+++.  .+.++..||+||+||+++|+|++.+|
T Consensus        74 ~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p  150 (220)
T cd03265          74 RIGI-VFQDLSVD--DELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRP  150 (220)
T ss_pred             cEEE-ecCCcccc--ccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence            2444 55554322  2368888887654444433222344667888888876  36678899999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++||+||||++||+..++.+.++|.+
T Consensus       151 ~llllDEPt~~LD~~~~~~l~~~l~~  176 (220)
T cd03265         151 EVLFLDEPTIGLDPQTRAHVWEYIEK  176 (220)
T ss_pred             CEEEEcCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999998854

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=100.00  E-value=1.4e-33  Score=239.01  Aligned_cols=170  Identities=18%  Similarity=0.211  Sum_probs=130.9

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCeEE
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVAT  153 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~  153 (254)
                      ++++|+++.|++......+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...   ....++
T Consensus         1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~i~~   77 (220)
T cd03293           1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLER---PTSGEVLVDGEPVTGPGPDRGY   77 (220)
T ss_pred             CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccccCcEEE
Confidence            4688999999752111126799999999999999999999999999999999997   99999 5666422   233454


Q ss_pred             EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (254)
Q Consensus       154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlI  231 (254)
                       +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+|++.+|++||
T Consensus        78 -v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lll  154 (220)
T cd03293          78 -VFQQDALLP--WLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLL  154 (220)
T ss_pred             -Eeccccccc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence             555443222  267888876654433432222345567888888875  356778999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHhhc
Q 025366          232 VDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       232 lDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||++||+.+++.+.+++.+
T Consensus       155 LDEPt~~LD~~~~~~~~~~l~~  176 (220)
T cd03293         155 LDEPFSALDALTREQLQEELLD  176 (220)
T ss_pred             ECCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999998853

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7.6e-34  Score=230.54  Aligned_cols=170  Identities=13%  Similarity=0.179  Sum_probs=147.4

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCC
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD  150 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~  150 (254)
                      |+++.+++++..|+...  ..+++|+|++|.+||.+.++||||||||||+++++|++.   |+.|+ .+++...   ..+
T Consensus         1 M~~l~~~~~sl~y~g~~--~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~---P~~G~i~l~~r~i~gPgae   75 (259)
T COG4525           1 MCMLNVSHLSLSYEGKP--RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVT---PSRGSIQLNGRRIEGPGAE   75 (259)
T ss_pred             CceeehhheEEecCCcc--hhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcC---cccceEEECCEeccCCCcc
Confidence            57889999999999854  447799999999999999999999999999999999998   99999 5665422   345


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      .|. +.++.-.++.  +++.+|..+..+..|+.+....+...+.+..+++.  .+.++-+|||||+||+.+||||+.+|+
T Consensus        76 rgv-VFQ~~~LlPW--l~~~dNvafgL~l~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~  152 (259)
T COG4525          76 RGV-VFQNEALLPW--LNVIDNVAFGLQLRGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQ  152 (259)
T ss_pred             cee-EeccCccchh--hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcc
Confidence            676 5666555444  79999999999999998877778888889888886  577888999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +|+||||+..||.-.++++.+++-
T Consensus       153 ~LlLDEPfgAlDa~tRe~mQelLl  176 (259)
T COG4525         153 LLLLDEPFGALDALTREQMQELLL  176 (259)
T ss_pred             eEeecCchhhHHHHHHHHHHHHHH
Confidence            999999999999999999988763

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=100.00  E-value=1.8e-33  Score=237.31  Aligned_cols=167  Identities=14%  Similarity=0.146  Sum_probs=129.8

Q ss_pred             eEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      |++++|+++.|+ +.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus         1 ~l~~~~l~~~~~~~~--~--il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~   73 (214)
T TIGR02673         1 MIEFHNVSKAYPGGV--A--ALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT---PSRGQVRIAGEDVNRLRGRQ   73 (214)
T ss_pred             CEEEEeeeEEeCCCc--e--eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHH
Confidence            478999999994 42  2  6699999999999999999999999999999999997   99999 5666321       


Q ss_pred             ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhhh
Q 025366          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia~  221 (254)
                          ....++ +.++...+.  .+++.+++.+.....+.........+.++++.+++..  +..+..||+||+||+++|+
T Consensus        74 ~~~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~  150 (214)
T TIGR02673        74 LPLLRRRIGV-VFQDFRLLP--DRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIAR  150 (214)
T ss_pred             HHHHHhheEE-EecChhhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence                112343 555543222  2678888766543333322222345678888888753  5567899999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++.+|++|||||||++||+.++..+.+++.+
T Consensus       151 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  182 (214)
T TIGR02673       151 AIVNSPPLLLADEPTGNLDPDLSERILDLLKR  182 (214)
T ss_pred             HHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998864

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=7.4e-35  Score=237.07  Aligned_cols=168  Identities=20%  Similarity=0.239  Sum_probs=136.6

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |.++.++||.|+|+.+.    ++++|||+|++||||||+|||||||||.+.++.|+++   |++|+ .+++...      
T Consensus         2 ~~~L~a~~l~K~y~kr~----Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~---~d~G~i~ld~~diT~lPm~   74 (243)
T COG1137           2 MSTLVAENLAKSYKKRK----VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVR---PDSGKILLDDEDITKLPMH   74 (243)
T ss_pred             CcEEEehhhhHhhCCee----eeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEe---cCCceEEECCcccccCChH
Confidence            56899999999999854    6699999999999999999999999999999999998   99999 6666432      


Q ss_pred             -CC--CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC--CccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366          148 -PP--DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       148 -~~--~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~--~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia  220 (254)
                       +.  -.|+ ++|..- ++ .++++.+|+...........  .....++.++++.+.+.  .+.+...||||+|+|+.||
T Consensus        75 ~RArlGigY-LpQE~S-IF-r~LtV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLSGGERRR~EIA  151 (243)
T COG1137          75 KRARLGIGY-LPQEAS-IF-RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLSGGERRRVEIA  151 (243)
T ss_pred             HHhhcCccc-ccccch-Hh-hcCcHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccccchHHHHHHH
Confidence             12  2343 344332 22 24899999988776655322  23445577899988876  5677789999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |||+.+|++++|||||+|.||.+..+|.+++.
T Consensus       152 RaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~  183 (243)
T COG1137         152 RALAANPKFILLDEPFAGVDPIAVIDIQRIIK  183 (243)
T ss_pred             HHHhcCCCEEEecCCccCCCchhHHHHHHHHH
Confidence            99999999999999999999999999988875

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=100.00  E-value=4.9e-33  Score=236.89  Aligned_cols=173  Identities=17%  Similarity=0.079  Sum_probs=132.2

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (254)
                      .++|+++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....     
T Consensus         4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~   80 (228)
T PRK10584          4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDD---GSSGEVSLVGQPLHQMDEE   80 (228)
T ss_pred             CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeeEEECCEEcccCCHH
Confidence            4679999999999752111125699999999999999999999999999999999997   99999 56663221     


Q ss_pred             -------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       149 -------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                             ...++ +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++
T Consensus        81 ~~~~~~~~~i~~-~~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~l  157 (228)
T PRK10584         81 ARAKLRAKHVGF-VFQSFMLIP--TLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVAL  157 (228)
T ss_pred             HHHHHHhheEEE-EEcccccCC--CcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHH
Confidence                   12443 455433222  257888876543222322222345567888888875  356788999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++|+.+|++|||||||++||+..++.+.+++.+
T Consensus       158 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  191 (228)
T PRK10584        158 ARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS  191 (228)
T ss_pred             HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998853

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=100.00  E-value=2.6e-33  Score=235.78  Aligned_cols=166  Identities=17%  Similarity=0.185  Sum_probs=130.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----CCCeE
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDVA  152 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~~~~g  152 (254)
                      ++++|+++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...    ....+
T Consensus         1 l~~~~l~~~~~~~--~--~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~i~   73 (210)
T cd03269           1 LEVENVTKRFGRV--T--ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL---PDSGEVLFDGKPLDIAARNRIG   73 (210)
T ss_pred             CEEEEEEEEECCE--E--EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCCchhHHHHccEE
Confidence            4688999999763  3  5699999999999999999999999999999999997   99999 6676432    22344


Q ss_pred             EEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (254)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vl  230 (254)
                      + +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|++++.+|++|
T Consensus        74 ~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~l  150 (210)
T cd03269          74 Y-LPEERGLYP--KMKVIDQLVYLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELL  150 (210)
T ss_pred             E-eccCCcCCc--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            4 555543222  268888877654444433233345567788888775  35667899999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHhhc
Q 025366          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       231 IlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||||++||+..++.+.+++.+
T Consensus       151 llDEP~~~LD~~~~~~~~~~l~~  173 (210)
T cd03269         151 ILDEPFSGLDPVNVELLKDVIRE  173 (210)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999998864

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.1e-33  Score=254.29  Aligned_cols=169  Identities=14%  Similarity=0.104  Sum_probs=137.3

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (254)
                      ++++|+++|+++.|++..    +++++||++++|++++|+||||||||||+|+|+|+++   |+.|+ .++|+..     
T Consensus        16 ~~~~l~l~~v~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~   88 (377)
T PRK11607         16 LTPLLEIRNLTKSFDGQH----AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ---PTAGQIMLDGVDLSHVPP   88 (377)
T ss_pred             CCceEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence            456899999999998633    6799999999999999999999999999999999998   99999 6777432     


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                       ....|. +.++...++  .+++.+|+.+.....+........++.++++.+++.  .+.++..|||||+||+++||||+
T Consensus        89 ~~r~ig~-vfQ~~~lfp--~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~  165 (377)
T PRK11607         89 YQRPINM-MFQSYALFP--HMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLA  165 (377)
T ss_pred             HHCCEEE-EeCCCccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHh
Confidence             124565 555543332  379999998876554443333345677888888876  47788899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      .+|++||||||+++||...++.+.+.+.
T Consensus       166 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~  193 (377)
T PRK11607        166 KRPKLLLLDEPMGALDKKLRDRMQLEVV  193 (377)
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            9999999999999999999988886653

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=100.00  E-value=2e-33  Score=240.38  Aligned_cols=166  Identities=17%  Similarity=0.202  Sum_probs=128.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (254)
                      ++++||++.|++..    +++|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...         
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~~~   73 (235)
T cd03261           1 IELRGLTKSFGGRT----VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR---PDSGEVLIDGEDISGLSEAELY   73 (235)
T ss_pred             CeEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccChhhHH
Confidence            46889999998632    6699999999999999999999999999999999997   99999 5666321         


Q ss_pred             --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                        ....++ +.++...+.  .+++.+++.+..... +.........+.++++.+++.  .+..+..||+||+||+++|+|
T Consensus        74 ~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~a  150 (235)
T cd03261          74 RLRRRMGM-LFQSGALFD--SLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARA  150 (235)
T ss_pred             HHhcceEE-EccCcccCC--CCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence              112344 555443222  368888876643322 122112234567788888875  366778999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|++|||||||++||+..++.+.+++.+
T Consensus       151 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~  181 (235)
T cd03261         151 LALDPELLLYDEPTAGLDPIASGVIDDLIRS  181 (235)
T ss_pred             HhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998864

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=100.00  E-value=2.2e-33  Score=253.92  Aligned_cols=167  Identities=13%  Similarity=0.173  Sum_probs=137.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC--ce-ecCCCCC------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK--AS-SFDSQVK------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~--G~-~~~~~~~------  147 (254)
                      .|++++|++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++  |+ .++|...      
T Consensus         5 ~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~~~G~i~~~g~~~~~~~~~   77 (362)
T TIGR03258         5 GIRIDHLRVAYGANT----VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVK---AAGLTGRIAIADRDLTHAPPH   77 (362)
T ss_pred             EEEEEEEEEEECCeE----EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCEEEEECCEECCCCCHH
Confidence            589999999998633    6799999999999999999999999999999999997   999  99 6676432      


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~  225 (254)
                      ....|. +.++.. ++ +.+++.+|+.+.....+.+......++.++++.+++.  .+.++.+||+||+|||++||||+.
T Consensus        78 ~r~ig~-vfQ~~~-l~-p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~  154 (362)
T TIGR03258        78 KRGLAL-LFQNYA-LF-PHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAI  154 (362)
T ss_pred             HCCEEE-EECCcc-cC-CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhc
Confidence            123554 555543 33 2379999998876655544333445678888888886  577889999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|++||||||+++||+..++++.+.|.+
T Consensus       155 ~P~llLLDEP~s~LD~~~r~~l~~~l~~  182 (362)
T TIGR03258       155 EPDVLLLDEPLSALDANIRANMREEIAA  182 (362)
T ss_pred             CCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998853

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4.4e-33  Score=249.16  Aligned_cols=178  Identities=16%  Similarity=0.167  Sum_probs=135.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc-cCCCCce-ecCCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKAS-SFDSQVKP----  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~-~~p~~G~-~~~~~~~~----  148 (254)
                      |.+|+++||++.|+.....+.+|+||||+|++||++||+|+||||||||+++|+|+++. ..|++|+ .++|....    
T Consensus         1 m~~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~   80 (326)
T PRK11022          1 MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISE   80 (326)
T ss_pred             CceEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCH
Confidence            56799999999997633224478999999999999999999999999999999999851 1137898 66764221    


Q ss_pred             --------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC-----CCCCCCCCChhhh
Q 025366          149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVG  214 (254)
Q Consensus       149 --------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS~G~~  214 (254)
                              ...+. +.++.....++.+++.+++....... +.........+.++++.+++.     .+.++.+|||||+
T Consensus        81 ~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~  159 (326)
T PRK11022         81 KERRNLVGAEVAM-IFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMS  159 (326)
T ss_pred             HHHHHHhCCCEEE-EecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHH
Confidence                    13454 67765433334456666554433322 222223345678889999885     3578899999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||++||+||+.+|+|||+||||++||+..+.++.++|.+
T Consensus       160 QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~  198 (326)
T PRK11022        160 QRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLE  198 (326)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998854

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.5e-33  Score=241.99  Aligned_cols=167  Identities=13%  Similarity=0.128  Sum_probs=131.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCeE
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVA  152 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g  152 (254)
                      |++++|+++.|++.  .  +++|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...   ....+
T Consensus         1 ml~~~~l~~~~~~~--~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   73 (255)
T PRK11248          1 MLQISHLYADYGGK--P--ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVP---YQHGSITLDGKPVEGPGAERG   73 (255)
T ss_pred             CEEEEEEEEEeCCe--e--eEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCCcEE
Confidence            47899999999863  2  5699999999999999999999999999999999997   99999 5666422   12345


Q ss_pred             EEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (254)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vl  230 (254)
                      + +.++...+  +.+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|++++.+|++|
T Consensus        74 ~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~ll  150 (255)
T PRK11248         74 V-VFQNEGLL--PWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLL  150 (255)
T ss_pred             E-EeCCCccC--CCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            4 55554322  2257888876544333432222334567888888875  35677899999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHhhc
Q 025366          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       231 IlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||||++||+..++.+.++|.+
T Consensus       151 lLDEPt~~LD~~~~~~l~~~L~~  173 (255)
T PRK11248        151 LLDEPFGALDAFTREQMQTLLLK  173 (255)
T ss_pred             EEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999998853

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=100.00  E-value=3.2e-33  Score=247.72  Aligned_cols=167  Identities=16%  Similarity=0.148  Sum_probs=135.5

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------C
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~  148 (254)
                      .++++|+++.|++..    +++|+||++++|+++||+||||||||||+++|+|+++   |++|+ .++|...       .
T Consensus         2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~---~~~G~i~i~g~~~~~~~~~~~   74 (301)
T TIGR03522         2 SIRVSSLTKLYGTQN----ALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP---PDSGSVQVCGEDVLQNPKEVQ   74 (301)
T ss_pred             EEEEEEEEEEECCEE----EEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccChHHHH
Confidence            489999999998633    6799999999999999999999999999999999998   99999 6666432       1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                      ...|+ +.++...+  +.+++.+++.+....++.+.......+.++++.+++.  .+.++..||+||+||+++|+|++.+
T Consensus        75 ~~ig~-~~q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~  151 (301)
T TIGR03522        75 RNIGY-LPEHNPLY--LDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHD  151 (301)
T ss_pred             hceEE-ecCCCCCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence            23454 45543322  2368889888766555544333345677888888876  4678889999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++|||||||++||+..++.+++++.+
T Consensus       152 p~lliLDEPt~gLD~~~~~~l~~~l~~  178 (301)
T TIGR03522       152 PKVLILDEPTTGLDPNQLVEIRNVIKN  178 (301)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999998864

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=100.00  E-value=2.9e-33  Score=236.65  Aligned_cols=171  Identities=15%  Similarity=0.122  Sum_probs=133.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------C
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~  148 (254)
                      +++++||++.|++..+...+++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...       .
T Consensus         1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   77 (218)
T cd03266           1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE---PDAGFATVDGFDVVKEPAEAR   77 (218)
T ss_pred             CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEEcccCHHHHH
Confidence            47899999999864111126699999999999999999999999999999999997   99999 5666322       1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                      ...++ +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+|++.+
T Consensus        78 ~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  154 (218)
T cd03266          78 RRLGF-VSDSTGLYD--RLTARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHD  154 (218)
T ss_pred             hhEEE-ecCCcccCc--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcC
Confidence            23444 555543222  268888887654444433222345667888888876  3667889999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++||+||||++||+..++.+.+++.+
T Consensus       155 p~illlDEPt~~LD~~~~~~l~~~l~~  181 (218)
T cd03266         155 PPVLLLDEPTTGLDVMATRALREFIRQ  181 (218)
T ss_pred             CCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=3.6e-33  Score=251.42  Aligned_cols=171  Identities=16%  Similarity=0.174  Sum_probs=134.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      ||+++||++.|+.......+++++||++++|+++||+||||||||||+|+|+|+++   |++|+ .++|...        
T Consensus         1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~i~~~~~~~~   77 (343)
T PRK11153          1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PTSGRVLVDGQDLTALSEKEL   77 (343)
T ss_pred             CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHH
Confidence            48899999999721111226799999999999999999999999999999999997   99999 6666321        


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         ....++ +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+.++.+||+||+||+++|+|
T Consensus        78 ~~~~~~ig~-v~q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAra  154 (343)
T PRK11153         78 RKARRQIGM-IFQHFNLLS--SRTVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARA  154 (343)
T ss_pred             HHHhcCEEE-EeCCCccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHH
Confidence               123454 555543222  268889887765544543323345667888888876  356788999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+.+|++|||||||++||+..+..+.++|.+
T Consensus       155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~  185 (343)
T PRK11153        155 LASNPKVLLCDEATSALDPATTRSILELLKD  185 (343)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998864

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=100.00  E-value=5.1e-33  Score=235.63  Aligned_cols=170  Identities=15%  Similarity=0.079  Sum_probs=129.5

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      +++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (221)
T TIGR02211         1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN---PTSGEVLFNGQSLSKLSSNER   77 (221)
T ss_pred             CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcCHhHH
Confidence            37899999999752111226699999999999999999999999999999999997   99999 56663210       


Q ss_pred             -----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       149 -----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                           ...++ +.++...+.  .+++.+++.+...............+.++++.+++.  .+..+..||+||+||+++|+
T Consensus        78 ~~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  154 (221)
T TIGR02211        78 AKLRNKKLGF-IYQFHHLLP--DFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIAR  154 (221)
T ss_pred             HHHHHhcEEE-EecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHH
Confidence                 22444 555543222  267888876643322222212234567788888775  35677899999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +++.+|++|||||||++||+.+++.+.+++.
T Consensus       155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~  185 (221)
T TIGR02211       155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLML  185 (221)
T ss_pred             HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999885

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=100.00  E-value=4.6e-33  Score=237.82  Aligned_cols=171  Identities=18%  Similarity=0.181  Sum_probs=131.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      |++++|+++.|++..+...+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus         1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (233)
T cd03258           1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLER---PTSGSVLVDGTDLTLLSGKEL   77 (233)
T ss_pred             CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcccCCHHHH
Confidence            47899999999763100126699999999999999999999999999999999998   99999 6666422        


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         ....++ +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|++
T Consensus        78 ~~~~~~i~~-~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a  154 (233)
T cd03258          78 RKARRRIGM-IFQHFNLLS--SRTVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARA  154 (233)
T ss_pred             HHHHhheEE-EccCcccCC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHH
Confidence               112343 555543222  368888876654333332222234567788888875  356778999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|++|||||||++||+.+++.+.+++.+
T Consensus       155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~  185 (233)
T cd03258         155 LANNPKVLLCDEATSALDPETTQSILALLRD  185 (233)
T ss_pred             HhcCCCEEEecCCCCcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998864

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=100.00  E-value=4.2e-33  Score=236.02  Aligned_cols=168  Identities=18%  Similarity=0.154  Sum_probs=130.5

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP  149 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~  149 (254)
                      |+++||++.|++....  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...       ..
T Consensus         1 l~~~~l~~~~~~~~~~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   75 (220)
T cd03263           1 LQIRNLTKTYKKGTKP--AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR---PTSGTAYINGYSIRTDRKAARQ   75 (220)
T ss_pred             CEEEeeEEEeCCCCce--eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccchHHHhh
Confidence            4688999999752112  6799999999999999999999999999999999997   99999 5666432       12


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                      ..++ +.++...+.  ..++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|++++.+|
T Consensus        76 ~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  152 (220)
T cd03263          76 SLGY-CPQFDALFD--ELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGP  152 (220)
T ss_pred             hEEE-ecCcCCccc--cCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCC
Confidence            2444 555433222  267888877655444433222234567788888775  35677899999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++||+||||++||+..++.+.+++.+
T Consensus       153 ~llllDEP~~~LD~~~~~~l~~~l~~  178 (220)
T cd03263         153 SVLLLDEPTSGLDPASRRAIWDLILE  178 (220)
T ss_pred             CEEEECCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999998854

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=100.00  E-value=1.3e-33  Score=236.09  Aligned_cols=166  Identities=16%  Similarity=0.167  Sum_probs=142.8

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----CCCe
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDV  151 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~~~~  151 (254)
                      ++++++|+|+||+..    |++|+||++++|++.|++|+|||||||++|+|.|++.   |+.|+ .++|...    ...+
T Consensus         2 ~L~ie~vtK~Fg~k~----av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle---~~~G~I~~~g~~~~~~~~~rI   74 (300)
T COG4152           2 ALEIEGVTKSFGDKK----AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLE---PTEGEITWNGGPLSQEIKNRI   74 (300)
T ss_pred             ceEEecchhccCcee----eecceeeeecCCeEEEeecCCCCCccchHHHHhccCC---ccCceEEEcCcchhhhhhhhc
Confidence            589999999999966    8899999999999999999999999999999999998   99999 5666432    2345


Q ss_pred             EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcE
Q 025366          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (254)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~v  229 (254)
                      |++-.-.|.+   +.+++.+.+.+.....|++.......+..+++.+.+.  ...++.+||.|++|++.+..+++++|++
T Consensus        75 GyLPEERGLy---~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeL  151 (300)
T COG4152          75 GYLPEERGLY---PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPEL  151 (300)
T ss_pred             ccChhhhccC---ccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCE
Confidence            5532233332   2389999999999999999888888899999999887  4567889999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHhh
Q 025366          230 VIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       230 lIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +||||||+||||.+.+-+.+.+-
T Consensus       152 lILDEPFSGLDPVN~elLk~~I~  174 (300)
T COG4152         152 LILDEPFSGLDPVNVELLKDAIF  174 (300)
T ss_pred             EEecCCccCCChhhHHHHHHHHH
Confidence            99999999999999998888764

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=7.7e-33  Score=243.71  Aligned_cols=171  Identities=15%  Similarity=0.121  Sum_probs=134.4

Q ss_pred             eEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      .|++++|++.|+.... ...+++++||++++|+++||+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (287)
T PRK13637          2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLK---PTSGKIIIDGVDITDKKVKL   78 (287)
T ss_pred             EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCccEEEECCEECCCcCccH
Confidence            4899999999975211 1126799999999999999999999999999999999997   99999 6666322       


Q ss_pred             ---CCCeEEEeeCCC-CCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC----CCCCCCCCChhhhhhHhh
Q 025366          148 ---PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       148 ---~~~~g~~i~~~~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~i  219 (254)
                         ....|+ +.++. ..++.  .++.+++.+.....++........+.++++.+++.    .+.++..||+||+||++|
T Consensus        79 ~~~~~~ig~-v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~i  155 (287)
T PRK13637         79 SDIRKKVGL-VFQYPEYQLFE--ETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAI  155 (287)
T ss_pred             HHHhhceEE-EecCchhcccc--ccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHH
Confidence               123454 55553 22222  58888887655444543322334567888888885    467788999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+.+|++||+||||++||+..+.++.++|.+
T Consensus       156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~  189 (287)
T PRK13637        156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKE  189 (287)
T ss_pred             HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998853

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=100.00  E-value=4.8e-33  Score=234.52  Aligned_cols=166  Identities=14%  Similarity=0.117  Sum_probs=128.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (254)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      ...
T Consensus         1 i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~v~~~g~~~~~~~~~~~~   73 (213)
T cd03301           1 VELENVTKRFGNVT----ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE---PTSGRIYIGGRDVTDLPPKDRD   73 (213)
T ss_pred             CEEEeeEEEECCee----eeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccce
Confidence            46899999998732    5699999999999999999999999999999999997   99999 5666321      112


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      .++ +.++...+  ...++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        74 i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~  150 (213)
T cd03301          74 IAM-VFQNYALY--PHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPK  150 (213)
T ss_pred             EEE-EecChhhc--cCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            343 55544322  2267888876643333322222234566778887775  466778999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+||||++||+..++.+.+++.+
T Consensus       151 llllDEPt~~LD~~~~~~l~~~l~~  175 (213)
T cd03301         151 VFLMDEPLSNLDAKLRVQMRAELKR  175 (213)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998853

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=100.00  E-value=7.1e-33  Score=237.66  Aligned_cols=167  Identities=16%  Similarity=0.223  Sum_probs=129.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~  149 (254)
                      +++++||++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      ..
T Consensus         2 ~l~~~~l~~~~~~~--~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (239)
T cd03296           2 SIEVRNVSKRFGDF--V--ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLER---PDSGTILFGGEDATDVPVQER   74 (239)
T ss_pred             EEEEEeEEEEECCE--E--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCCcccc
Confidence            48999999999863  3  5699999999999999999999999999999999997   99999 5666321      12


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC----CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~----~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                      ..++ +.++...+.  .+++.+++.+.....+.    ........+..+++.+++.  .+..+..||+||+||+++|+|+
T Consensus        75 ~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al  151 (239)
T cd03296          75 NVGF-VFQHYALFR--HMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARAL  151 (239)
T ss_pred             ceEE-EecCCcccC--CCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHH
Confidence            2444 555543222  26788887654332222    1111123456778888775  3567789999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++||+||||++||+..++.+.+++.+
T Consensus       152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~  181 (239)
T cd03296         152 AVEPKVLLLDEPFGALDAKVRKELRRWLRR  181 (239)
T ss_pred             hcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998864

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=100.00  E-value=8.2e-33  Score=236.86  Aligned_cols=167  Identities=18%  Similarity=0.133  Sum_probs=129.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      +++++|+++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 ~l~~~~l~~~~~~~--~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~i~~~~~~~~   73 (236)
T TIGR03864         1 ALEVAGLSFAYGAR--R--ALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV---AQEGQISVAGHDLRRAPRAAL   73 (236)
T ss_pred             CEEEEeeEEEECCE--E--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcccCChhhh
Confidence            47899999999863  2  5699999999999999999999999999999999997   99999 56663211       


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                      ...++ +.++....+  .+++.+++.......+.........+.++++.+++.  .+..+..||+||+||+++|++++.+
T Consensus        74 ~~i~~-~~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~  150 (236)
T TIGR03864        74 ARLGV-VFQQPTLDL--DLSVRQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHR  150 (236)
T ss_pred             hhEEE-eCCCCCCcc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence            12343 455433222  267888776543333322222234567778887775  3567789999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++||+||||++||+..++.+.+++.+
T Consensus       151 p~llllDEP~~~LD~~~~~~l~~~l~~  177 (236)
T TIGR03864       151 PALLLLDEPTVGLDPASRAAIVAHVRA  177 (236)
T ss_pred             CCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998853

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=5.7e-33  Score=233.76  Aligned_cols=167  Identities=14%  Similarity=0.139  Sum_probs=127.3

Q ss_pred             EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC--------C
Q 025366           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------P  149 (254)
Q Consensus        79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~--------~  149 (254)
                      +++|+++.|++..+.  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....        .
T Consensus         1 ~~~~l~~~~~~~~~~--il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~   75 (211)
T cd03225           1 ELKNLSFSYPDGARP--ALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG---PTSGEVLVDGKDLTKLSLKELRR   75 (211)
T ss_pred             CceeEEEecCCCCee--eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEcccCCHHHHHh
Confidence            367899999762112  6699999999999999999999999999999999997   99999 56663221        1


Q ss_pred             CeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          150 DVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       150 ~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                      ..++ +.++.. .++  .+++.+++.+.....+.........+.++++.+++.  .+.++..||+||+||+++|+|++.+
T Consensus        76 ~i~~-~~q~~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~  152 (211)
T cd03225          76 KVGL-VFQNPDDQFF--GPTVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMD  152 (211)
T ss_pred             hceE-EecChhhhcC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence            2344 555532 122  257888776543333322112234567788888775  3567889999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++||+||||++||+..++.+.+++.+
T Consensus       153 p~llllDEPt~~LD~~~~~~~~~~l~~  179 (211)
T cd03225         153 PDILLLDEPTAGLDPAGRRELLELLKK  179 (211)
T ss_pred             CCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999998853

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=100.00  E-value=1e-32  Score=238.07  Aligned_cols=169  Identities=15%  Similarity=0.178  Sum_probs=130.2

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus         1 m~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~   73 (250)
T PRK11264          1 MSAIEVKNLVKKFHGQT----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ---PEAGTIRVGDITIDTARSL   73 (250)
T ss_pred             CCcEEEeceEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccccc
Confidence            35799999999998632    5699999999999999999999999999999999997   99999 5665321      


Q ss_pred             ----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhh
Q 025366          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~  214 (254)
                                ....++ +.++...++  ..++.+++.+.... .+.........+.++++.+++.  .+..+..||+||+
T Consensus        74 ~~~~~~~~~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~  150 (250)
T PRK11264         74 SQQKGLIRQLRQHVGF-VFQNFNLFP--HRTVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQ  150 (250)
T ss_pred             cchhhHHHHhhhhEEE-EecCcccCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHH
Confidence                      112343 555543222  25788887653322 2222212234566778888775  3567789999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|++++.+|++||+||||++||+.+++.+.+++.+
T Consensus       151 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  189 (250)
T PRK11264        151 QRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQ  189 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998753

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.3e-32  Score=246.15  Aligned_cols=175  Identities=15%  Similarity=0.126  Sum_probs=136.7

Q ss_pred             cceEEEecceeeccccc------ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC
Q 025366           75 IPVVEARCMDEVYDALA------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~------~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~  147 (254)
                      +++|+++||++.|+...      ..+.+++||||+|++|+++||+|+||||||||+++|+|+++   |++|+ .++|...
T Consensus         3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~---p~~G~i~~~g~~l   79 (327)
T PRK11308          3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIET---PTGGELYYQGQDL   79 (327)
T ss_pred             CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCC---CCCcEEEECCEEc
Confidence            46899999999996321      12347899999999999999999999999999999999997   99999 6666321


Q ss_pred             -----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC---CCCCCCCCChh
Q 025366          148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG  212 (254)
Q Consensus       148 -----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G  212 (254)
                                 ....+. +.++.+...++.+++.+++.+..... +.........+.++++.+++.   .+.++.+||||
T Consensus        80 ~~~~~~~~~~~r~~i~~-v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgG  158 (327)
T PRK11308         80 LKADPEAQKLLRQKIQI-VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGG  158 (327)
T ss_pred             CcCCHHHHHHHhCCEEE-EEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHH
Confidence                       223454 67775433334467766665433332 232223345678889998885   47788999999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||++||+||+.+|++||+||||++||...+.++.++|.+
T Consensus       159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~  199 (327)
T PRK11308        159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMD  199 (327)
T ss_pred             HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998854

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=100.00  E-value=8.3e-33  Score=249.65  Aligned_cols=167  Identities=13%  Similarity=0.164  Sum_probs=134.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~  149 (254)
                      +|+++||++.|++..    +++++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...      ..
T Consensus         2 ~L~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~---p~~G~I~i~g~~i~~~~~~~r   74 (353)
T PRK10851          2 SIEIANIKKSFGRTQ----VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH---QTSGHIRFHGTDVSRLHARDR   74 (353)
T ss_pred             EEEEEEEEEEeCCeE----EEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHHC
Confidence            488999999998733    6799999999999999999999999999999999997   99999 6777432      12


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHc----CCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~----g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                      ..++ +.++...++  .+++.+|+.+.....    +.........+.++++.+++.  .+.++.+|||||+||+++|+||
T Consensus        75 ~i~~-v~Q~~~l~p--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL  151 (353)
T PRK10851         75 KVGF-VFQHYALFR--HMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARAL  151 (353)
T ss_pred             CEEE-EecCcccCC--CCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHH
Confidence            3554 566543322  278999988765432    112222345677888888876  4678899999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++||+||||++||+..++++.++|.+
T Consensus       152 ~~~P~llLLDEP~s~LD~~~r~~l~~~L~~  181 (353)
T PRK10851        152 AVEPQILLLDEPFGALDAQVRKELRRWLRQ  181 (353)
T ss_pred             hcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999988864

>PRK10908 cell division protein FtsE; Provisional

Probab=100.00  E-value=7.9e-33  Score=234.82  Aligned_cols=167  Identities=16%  Similarity=0.139  Sum_probs=128.8

Q ss_pred             eEEEecceeec-ccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        77 ~l~i~~l~~~y-~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      |++++|+++.| ++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus         1 ~l~~~~l~~~~~~~~--~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~   73 (222)
T PRK10908          1 MIRFEHVSKAYLGGR--Q--ALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIER---PSAGKIWFSGHDITRLKNRE   73 (222)
T ss_pred             CEEEEeeEEEecCCC--e--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCChhH
Confidence            47899999999 542  2  5699999999999999999999999999999999997   99999 5666321       


Q ss_pred             ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                          ....++ +.++...++  ..++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+
T Consensus        74 ~~~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  150 (222)
T PRK10908         74 VPFLRRQIGM-IFQDHHLLM--DRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIAR  150 (222)
T ss_pred             HHHHHhheEE-EecCccccc--cccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHH
Confidence                112344 555543222  257888776644333332222233456778887775  35677899999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++.+|++||+||||++||+.+++.+.+++.+
T Consensus       151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (222)
T PRK10908        151 AVVNKPAVLLADEPTGNLDDALSEGILRLFEE  182 (222)
T ss_pred             HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998764

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=100.00  E-value=7.7e-33  Score=253.04  Aligned_cols=169  Identities=15%  Similarity=0.161  Sum_probs=133.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |++|+++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...      
T Consensus         1 ~~~L~~~nls~~y~~~~----vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~---p~sG~I~l~G~~i~~~~~~   73 (402)
T PRK09536          1 MPMIDVSDLSVEFGDTT----VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLT---PTAGTVLVAGDDVEALSAR   73 (402)
T ss_pred             CceEEEeeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEEcCcCCHH
Confidence            45799999999998733    6699999999999999999999999999999999998   99999 6666321      


Q ss_pred             --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc--CC--CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GA--PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~--g~--~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                        ....|+ +.++....+.  +++.+++.+.+..+  .+  ....+...+.++++.+++.  .+.++.+||+|||||++|
T Consensus        74 ~~~~~ig~-v~q~~~l~~~--~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~I  150 (402)
T PRK09536         74 AASRRVAS-VPQDTSLSFE--FDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLL  150 (402)
T ss_pred             HHhcceEE-EccCCCCCCC--CCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHH
Confidence              123555 5555433222  68888776543211  11  1223345678888888886  467788999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+.+|++|||||||++||+..+.+++++|.+
T Consensus       151 ArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~  184 (402)
T PRK09536        151 ARALAQATPVLLLDEPTASLDINHQVRTLELVRR  184 (402)
T ss_pred             HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998864

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=100.00  E-value=1.2e-32  Score=240.37  Aligned_cols=169  Identities=14%  Similarity=0.192  Sum_probs=131.0

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      +++|+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus         5 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   77 (269)
T PRK11831          5 ANLVDMRGVSFTRGNRC----IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA---PDHGEILFDGENIPAMSRS   77 (269)
T ss_pred             cceEEEeCeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccChh
Confidence            46899999999997632    5699999999999999999999999999999999997   99999 6666321      


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                           ....++ +.++...+.  .+++.+++.+..... +.........+.++++.+++.  .+..+..||+||+||+++
T Consensus        78 ~~~~~~~~i~~-v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~l  154 (269)
T PRK11831         78 RLYTVRKRMSM-LFQSGALFT--DMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAAL  154 (269)
T ss_pred             hHHHHhhcEEE-EecccccCC--CCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHH
Confidence                 112444 555543222  267888876543222 111111223456778888776  466788999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++++.+|++|||||||++||+.+++.+.+++.+
T Consensus       155 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  188 (269)
T PRK11831        155 ARAIALEPDLIMFDEPFVGQDPITMGVLVKLISE  188 (269)
T ss_pred             HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998864

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=100.00  E-value=5.1e-33  Score=234.49  Aligned_cols=167  Identities=14%  Similarity=0.115  Sum_probs=127.0

Q ss_pred             EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCeEEE
Q 025366           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATV  154 (254)
Q Consensus        79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~  154 (254)
                      +++||++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...   ....++ 
T Consensus         1 ~~~~l~~~~~~~--~--~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~i~~-   72 (213)
T cd03235           1 EVEDLTVSYGGH--P--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK---PTSGSIRVFGKPLEKERKRIGY-   72 (213)
T ss_pred             CcccceeEECCE--E--eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCccHHHHHhheEE-
Confidence            367999999863  2  5699999999999999999999999999999999997   99999 6666432   233454 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHc-CC---CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~-g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      +.++.........++.+++.+..... ..   ........+.++++.+++.  .+.++.+||+||+||+++|+|++.+|+
T Consensus        73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~  152 (213)
T cd03235          73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPD  152 (213)
T ss_pred             eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCC
Confidence            55543321111257888776532211 11   1112234567788887775  456788999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+||||++||+..++.+.+++.+
T Consensus       153 llllDEPt~~LD~~~~~~l~~~l~~  177 (213)
T cd03235         153 LLLLDEPFAGVDPKTQEDIYELLRE  177 (213)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998864

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=100.00  E-value=9.2e-33  Score=231.68  Aligned_cols=161  Identities=17%  Similarity=0.113  Sum_probs=127.2

Q ss_pred             EEecceeeccc-ccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CCCe
Q 025366           79 EARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPDV  151 (254)
Q Consensus        79 ~i~~l~~~y~~-~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~~~  151 (254)
                      +++||++.|++ ..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...     ....
T Consensus         1 ~~~~l~~~~~~~~~----~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~i   73 (205)
T cd03226           1 RIENISFSYKKGTE----ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIK---ESSGSILLNGKPIKAKERRKSI   73 (205)
T ss_pred             CcccEEEEeCCcCc----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEhhhHHhhcce
Confidence            36799999976 33    6799999999999999999999999999999999997   99999 5666432     1234


Q ss_pred             EEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          152 ATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       152 g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      ++ +.++.. .++  ..++.+++.+.....+    .....+.++++.+++.  .+..+..||+||+||+++|+|++.+|+
T Consensus        74 ~~-~~q~~~~~~~--~~tv~e~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~  146 (205)
T cd03226          74 GY-VMQDVDYQLF--TDSVREELLLGLKELD----AGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKD  146 (205)
T ss_pred             EE-EecChhhhhh--hccHHHHHhhhhhhcC----ccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCC
Confidence            54 555532 222  2578887765432221    1235677888888876  466778999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+||||++||+..++.+.+++.+
T Consensus       147 llllDEPt~~LD~~~~~~l~~~l~~  171 (205)
T cd03226         147 LLIFDEPTSGLDYKNMERVGELIRE  171 (205)
T ss_pred             EEEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998864

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=100.00  E-value=8.9e-33  Score=235.79  Aligned_cols=166  Identities=21%  Similarity=0.234  Sum_probs=128.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (254)
                      ++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...         
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   73 (232)
T cd03218           1 LRAENLSKRYGKRK----VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK---PDSGKILLDGQDITKLPMHKRA   73 (232)
T ss_pred             CeEEEEEEEeCCEE----eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccCCHhHHH
Confidence            46889999998633    6699999999999999999999999999999999997   99999 5666321         


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~  225 (254)
                      ....++ +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+|++.
T Consensus        74 ~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~  150 (232)
T cd03218          74 RLGIGY-LPQEASIFR--KLTVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALAT  150 (232)
T ss_pred             hccEEE-ecCCccccc--cCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence            112343 455443222  268888876644333322222234556788887775  356778999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|++|||||||++||+.+++.+.+++.+
T Consensus       151 ~p~llllDEPt~~LD~~~~~~~~~~l~~  178 (232)
T cd03218         151 NPKFLLLDEPFAGVDPIAVQDIQKIIKI  178 (232)
T ss_pred             CCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998854

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=100.00  E-value=1.4e-32  Score=246.27  Aligned_cols=175  Identities=14%  Similarity=0.136  Sum_probs=136.6

Q ss_pred             cceEEEecceeeccccc---------ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCC
Q 025366           75 IPVVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~---------~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~  144 (254)
                      .++|+++||++.|+...         ..+.+++|+||+|++||+++|+|+||||||||+++|+|++.   |++|+ .++|
T Consensus         6 ~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~---p~~G~I~~~G   82 (331)
T PRK15079          6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVK---ATDGEVAWLG   82 (331)
T ss_pred             CceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC---CCCcEEEECC
Confidence            46899999999996411         12347799999999999999999999999999999999997   99999 6776


Q ss_pred             CCC-----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc--CCCCCccHHHHHHHHHhhccC---CCCCCCC
Q 025366          145 QVK-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GAPWTFNPLLLLNCLKNLRNQ---GSVYAPS  208 (254)
Q Consensus       145 ~~~-----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~--g~~~~~~~~~~~~~l~~l~l~---~~~~~~~  208 (254)
                      ...           ....+. +.++......+.+++.+++.+....+  +.........+.++++.+++.   .+.++.+
T Consensus        83 ~~i~~~~~~~~~~~r~~i~~-v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~  161 (331)
T PRK15079         83 KDLLGMKDDEWRAVRSDIQM-IFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHE  161 (331)
T ss_pred             EECCcCCHHHHHHHhCceEE-EecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCccc
Confidence            432           123444 67765321233368888877654433  222222334567888888884   4778899


Q ss_pred             CChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       209 lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||+||++||+||+.+|++||+||||++||...+.++.++|.+
T Consensus       162 LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~  206 (331)
T PRK15079        162 FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQ  206 (331)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998864

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=100.00  E-value=8.8e-33  Score=231.68  Aligned_cols=164  Identities=11%  Similarity=0.007  Sum_probs=128.2

Q ss_pred             EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----------
Q 025366           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----------  147 (254)
Q Consensus        80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----------  147 (254)
                      ++||++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...           
T Consensus         1 i~~l~~~~~~~--~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~   73 (206)
T TIGR03608         1 LKNISKKFGDK--I--ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK---FDSGQVYLNGKETPPLNSKKASKF   73 (206)
T ss_pred             CcceEEEECCE--E--EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccchhhHHHH
Confidence            46899999863  3  5699999999999999999999999999999999997   99999 5666431           


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                       ....++ +.++...+.  ..++.+++.+.....+.........+.++++.+++.  .+..+.+||+||+||+++|+||+
T Consensus        74 ~~~~i~~-~~q~~~~~~--~~t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~  150 (206)
T TIGR03608        74 RREKLGY-LFQNFALIE--NETVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAIL  150 (206)
T ss_pred             HHhCeeE-Eecchhhcc--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHH
Confidence             112443 444433222  268888877644333333223345667888888875  46677899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|++||+||||++||+.+++.+.+++.+
T Consensus       151 ~~p~llllDEPt~~LD~~~~~~l~~~l~~  179 (206)
T TIGR03608       151 KDPPLILADEPTGSLDPKNRDEVLDLLLE  179 (206)
T ss_pred             cCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998864

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=1.5e-32  Score=230.30  Aligned_cols=164  Identities=19%  Similarity=0.186  Sum_probs=130.0

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------C
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~  148 (254)
                      +++++++++.|++..    +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...       .
T Consensus         1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~v~~~g~~~~~~~~~~~   73 (204)
T PRK13538          1 MLEARNLACERDERI----LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLAR---PDAGEVLWQGEPIRRQRDEYH   73 (204)
T ss_pred             CeEEEEEEEEECCEE----EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccchHHhh
Confidence            478999999998632    5699999999999999999999999999999999997   99999 5666321       1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                      ...++ +.++...  .+.+++.+++.+.....+.   .+...+.++++.+++.  .+.++..||+||+||+++|+|++.+
T Consensus        74 ~~~~~-~~~~~~~--~~~~tv~e~l~~~~~~~~~---~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~  147 (204)
T PRK13538         74 QDLLY-LGHQPGI--KTELTALENLRFYQRLHGP---GDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTR  147 (204)
T ss_pred             hheEE-eCCcccc--CcCCcHHHHHHHHHHhcCc---cHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcC
Confidence            22343 3433322  2236888888765433221   2345667888888875  4667889999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|+||||++||+..++.+.++|.+
T Consensus       148 p~llllDEPt~~LD~~~~~~l~~~l~~  174 (204)
T PRK13538        148 APLWILDEPFTAIDKQGVARLEALLAQ  174 (204)
T ss_pred             CCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999998864

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=100.00  E-value=6e-33  Score=230.96  Aligned_cols=171  Identities=16%  Similarity=0.212  Sum_probs=135.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (254)
                      +++++++||+..|+..+    +|++|||++++|||++|+|+||+|||||+|+|+|+.+   +.+|+ .++|+...     
T Consensus         1 ~~mL~v~~l~~~YG~~~----~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~---~~~G~I~~~G~dit~~p~~   73 (237)
T COG0410           1 APMLEVENLSAGYGKIQ----ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVR---PRSGRIIFDGEDITGLPPH   73 (237)
T ss_pred             CCceeEEeEeeccccee----EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeeEEECCeecCCCCHH
Confidence            36899999999999855    7799999999999999999999999999999999997   88999 67775331     


Q ss_pred             --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC--CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhc
Q 025366          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~--~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                        ...|....-.+..++. .+|+.||+........-  .+..+.+.+.+++-+|..-.+.....|||||+|-++|||||+
T Consensus        74 ~r~r~Gi~~VPegR~iF~-~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm  152 (237)
T COG0410          74 ERARLGIAYVPEGRRIFP-RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALM  152 (237)
T ss_pred             HHHhCCeEeCcccccchh-hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHh
Confidence              1223322333444443 38999998765433221  122225566677777777788899999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|++|+||||+.||-|...++|.+.|.+
T Consensus       153 ~~PklLLLDEPs~GLaP~iv~~I~~~i~~  181 (237)
T COG0410         153 SRPKLLLLDEPSEGLAPKIVEEIFEAIKE  181 (237)
T ss_pred             cCCCEEEecCCccCcCHHHHHHHHHHHHH
Confidence            99999999999999999999999988753

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=100.00  E-value=1.2e-32  Score=232.16  Aligned_cols=167  Identities=17%  Similarity=0.127  Sum_probs=128.9

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC--------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~--------  148 (254)
                      ++++|+++.|++. +.  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....        
T Consensus         1 l~~~~l~~~~~~~-~~--~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~   74 (214)
T cd03292           1 IEFINVTKTYPNG-TA--ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEEL---PTSGTIRVNGQDVSDLRGRAIP   74 (214)
T ss_pred             CEEEEEEEEeCCC-ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHHH
Confidence            4688999999642 22  5699999999999999999999999999999999997   99999 56664221        


Q ss_pred             ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                         ...++ +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+++
T Consensus        75 ~~~~~i~~-v~q~~~~~~--~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral  151 (214)
T cd03292          75 YLRRKIGV-VFQDFRLLP--DRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAI  151 (214)
T ss_pred             HHHHheEE-EecCchhcc--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHH
Confidence               12343 555443222  268888877654433332222234567788887775  3567789999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++||+||||++||+..++.+.+++.+
T Consensus       152 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~  181 (214)
T cd03292         152 VNSPTILIADEPTGNLDPDTTWEIMNLLKK  181 (214)
T ss_pred             HcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998854

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=100.00  E-value=1.1e-32  Score=232.17  Aligned_cols=165  Identities=18%  Similarity=0.144  Sum_probs=129.4

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP  149 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~  149 (254)
                      ++++++++.|++.  .  +++++||++++| +++|+||||||||||+++|+|+++   |++|+ .++|...       ..
T Consensus         1 i~~~~~~~~~~~~--~--~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   72 (211)
T cd03264           1 LQLENLTKRYGKK--R--ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTP---PSSGTIRIDGQDVLKQPQKLRR   72 (211)
T ss_pred             CEEEEEEEEECCE--E--EEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCCccccchHHHHh
Confidence            4688999999763  2  569999999999 999999999999999999999997   99999 5666432       12


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                      ..++ +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+|++.+|
T Consensus        73 ~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  149 (211)
T cd03264          73 RIGY-LPQEFGVYP--NFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDP  149 (211)
T ss_pred             heEE-ecCCCcccc--cCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCC
Confidence            2343 555543322  268888877654433332222234567788888775  36678899999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++||+||||++||+.+++.+.+++.+
T Consensus       150 ~llllDEPt~~LD~~~~~~l~~~l~~  175 (211)
T cd03264         150 SILIVDEPTAGLDPEERIRFRNLLSE  175 (211)
T ss_pred             CEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999998864

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.5e-32  Score=251.07  Aligned_cols=152  Identities=14%  Similarity=0.173  Sum_probs=122.9

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------------CCCeEEEeeCCCCCC
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------------PPDVATVLPMDGFHL  162 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------------~~~~g~~i~~~~~~~  162 (254)
                      +++++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...            ....++ +.++...+
T Consensus        43 ~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~---p~sG~I~i~G~~i~~~~~~~l~~~~~~~igy-v~Q~~~l~  118 (400)
T PRK10070         43 GVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIE---PTRGQVLIDGVDIAKISDAELREVRRKKIAM-VFQSFALM  118 (400)
T ss_pred             EEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCEEEECCEECCcCCHHHHHHHHhCCEEE-EECCCcCC
Confidence            6799999999999999999999999999999999998   99999 6666421            123555 55554332


Q ss_pred             CCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCC
Q 025366          163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (254)
Q Consensus       163 ~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD  240 (254)
                      +  .+++.+++.+.....+.........+.++++.+++.  .+.++.+||+||+||+++|+||+.+|++|||||||++||
T Consensus       119 ~--~~Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD  196 (400)
T PRK10070        119 P--HMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALD  196 (400)
T ss_pred             C--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCC
Confidence            2  268899988765544543333345677888888886  467788999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 025366          241 GGVWKDVSSMFDE  253 (254)
Q Consensus       241 ~~~~~~l~~ll~~  253 (254)
                      +..++.+.++|.+
T Consensus       197 ~~~r~~l~~~L~~  209 (400)
T PRK10070        197 PLIRTEMQDELVK  209 (400)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999998853

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=100.00  E-value=1.5e-32  Score=230.81  Aligned_cols=162  Identities=18%  Similarity=0.198  Sum_probs=128.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------CC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------PD  150 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------~~  150 (254)
                      ++++|+++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....      ..
T Consensus         1 l~~~~l~~~~~~~--~--~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (208)
T cd03268           1 LKTNDLTKTYGKK--R--VLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK---PDSGEITFDGKSYQKNIEALRR   73 (208)
T ss_pred             CEEEEEEEEECCe--E--eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCCcccchHHHHhh
Confidence            4689999999763  2  6699999999999999999999999999999999997   99999 66664321      22


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      .++ +.++...++  .+++.+++.+.....+.    ....+.++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        74 i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~  146 (208)
T cd03268          74 IGA-LIEAPGFYP--NLTARENLRLLARLLGI----RKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPD  146 (208)
T ss_pred             EEE-ecCCCccCc--cCcHHHHHHHHHHhcCC----cHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCC
Confidence            343 555443222  26888887665433321    345667788888775  356778999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+||||++||+..++.+.+++.+
T Consensus       147 llllDEPt~~LD~~~~~~l~~~l~~  171 (208)
T cd03268         147 LLILDEPTNGLDPDGIKELRELILS  171 (208)
T ss_pred             EEEECCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999988864

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=100.00  E-value=1.2e-32  Score=232.01  Aligned_cols=166  Identities=17%  Similarity=0.203  Sum_probs=128.1

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (254)
                      ++++||++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...         
T Consensus         1 l~~~~l~~~~~~~--~--~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (213)
T cd03262           1 IEIKNLHKSFGDF--H--VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE---PDSGTIIIDGLKLTDDKKNINE   73 (213)
T ss_pred             CEEEEEEEEECCe--E--eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccchhHHH
Confidence            4688999999863  3  5699999999999999999999999999999999997   99999 6666422         


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                       ....++ +.++...+.  .+++.+++.+... ..+.........+.++++.+++.  .+..+..||+||+||+++|+++
T Consensus        74 ~~~~i~~-~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al  150 (213)
T cd03262          74 LRQKVGM-VFQQFNLFP--HLTVLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARAL  150 (213)
T ss_pred             HHhcceE-EecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHH
Confidence             112344 555443222  2578888765432 22222222234567778887775  3677889999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++||+||||++||+.+++.+.+++.+
T Consensus       151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~  180 (213)
T cd03262         151 AMNPKVMLFDEPTSALDPELVGEVLDVMKD  180 (213)
T ss_pred             hcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998864

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-32  Score=241.80  Aligned_cols=171  Identities=14%  Similarity=0.080  Sum_probs=134.4

Q ss_pred             eEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      .++++||++.|++... ...+|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|+ .++|....      
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (290)
T PRK13634          2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQ---PTSGTVTIGERVITAGKKNK   78 (290)
T ss_pred             EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4899999999975211 1226799999999999999999999999999999999997   99999 67774321      


Q ss_pred             ------CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHh
Q 025366          149 ------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (254)
Q Consensus       149 ------~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~  218 (254)
                            ...|+ +.++.. .++.  .++.+++.+.....+.........+.++++.+++.   .+.++..||+||+||++
T Consensus        79 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~  155 (290)
T PRK13634         79 KLKPLRKKVGI-VFQFPEHQLFE--ETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVA  155 (290)
T ss_pred             hHHHHHhhEEE-EeeCchhhhhh--hhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHH
Confidence                  23454 555532 2332  58888887665555543333334667888888885   36778999999999999


Q ss_pred             hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|++|+.+|++||+||||++||+..+..+.+++.+
T Consensus       156 lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~  190 (290)
T PRK13634        156 IAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYK  190 (290)
T ss_pred             HHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998753

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=1.7e-32  Score=240.06  Aligned_cols=169  Identities=17%  Similarity=0.161  Sum_probs=132.3

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++++++||++.|+.. ..  +++|+||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|....      
T Consensus         3 ~~l~~~~l~~~~~~~-~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   76 (274)
T PRK13647          3 NIIEVEDLHFRYKDG-TK--ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL---PQRGRVKVMGREVNAENEKW   76 (274)
T ss_pred             ceEEEEEEEEEeCCC-Ce--eeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEECCCCCHHH
Confidence            479999999999632 22  6799999999999999999999999999999999997   99999 66664321      


Q ss_pred             --CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       149 --~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                        ...++ +.++.. .++.  .++.+++.+.....+.........+..+++.+++.  .+..+..||+||+||+++|+||
T Consensus        77 ~~~~i~~-v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL  153 (274)
T PRK13647         77 VRSKVGL-VFQDPDDQVFS--STVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVL  153 (274)
T ss_pred             HHhhEEE-EecChhhhhcc--CcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHH
Confidence              23454 555532 2222  58888887654433332222234567788887775  4667889999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++||+||||++||+..+.++.+++.+
T Consensus       154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~  183 (274)
T PRK13647        154 AMDPDVIVLDEPMAYLDPRGQETLMEILDR  183 (274)
T ss_pred             HcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998853

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=100.00  E-value=2.6e-32  Score=232.10  Aligned_cols=173  Identities=18%  Similarity=0.202  Sum_probs=127.9

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      +++++||++.|++......+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (228)
T cd03257           1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLK---PTSGSIIFDGKDLLKLSRRLR   77 (228)
T ss_pred             CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEccccchhhH
Confidence            47899999999763101125699999999999999999999999999999999997   99999 56663211       


Q ss_pred             ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCcc-HHH-HHHHHHhhccC---CCCCCCCCChhhhhhHhh
Q 025366          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN-PLL-LLNCLKNLRNQ---GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~-~~~-~~~~l~~l~l~---~~~~~~~lS~G~~qrv~i  219 (254)
                          ...++ +.++........+++.+++.+.....+...... ... ..++++.+++.   .+..+..||+||+||+++
T Consensus        78 ~~~~~~i~~-~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~l  156 (228)
T cd03257          78 KIRRKEIQM-VFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAI  156 (228)
T ss_pred             HHhhccEEE-EecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHH
Confidence                12444 555542112223678888765433332211111 112 23677777774   366788999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++++.+|++|||||||++||+.+++.+.+++.+
T Consensus       157 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  190 (228)
T cd03257         157 ARALALNPKLLIADEPTSALDVSVQAQILDLLKK  190 (228)
T ss_pred             HHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998853

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=100.00  E-value=1.9e-32  Score=235.36  Aligned_cols=166  Identities=14%  Similarity=0.110  Sum_probs=129.8

Q ss_pred             EEEecceeeccc-ccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        78 l~i~~l~~~y~~-~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      +++++|++.|++ ..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 l~~~~l~~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   73 (242)
T cd03295           1 IEFENVTKRYGGGKK----AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE---PTSGEIFIDGEDIREQDPVEL   73 (242)
T ss_pred             CEEEEEEEEeCCcce----EeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCeEcCcCChHHh
Confidence            468899999986 33    6799999999999999999999999999999999997   99999 56664221       


Q ss_pred             -CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC----CCCCCCCChhhhhhHhhhhhh
Q 025366          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       149 -~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~----~~~~~~lS~G~~qrv~ia~al  223 (254)
                       ...++ +.++...+.  .+++.+++.+.....+.........+.++++.+++..    +..+.+||+||+||+++|+++
T Consensus        74 ~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral  150 (242)
T cd03295          74 RRKIGY-VIQQIGLFP--HMTVEENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARAL  150 (242)
T ss_pred             hcceEE-EccCccccC--CCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHH
Confidence             12343 455433222  2688888876543333322223345678888888763    567789999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++||+||||++||+.+++.+.+++.+
T Consensus       151 ~~~p~llllDEPt~~LD~~~~~~l~~~L~~  180 (242)
T cd03295         151 AADPPLLLMDEPFGALDPITRDQLQEEFKR  180 (242)
T ss_pred             hcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999988754

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.7e-32  Score=240.30  Aligned_cols=171  Identities=16%  Similarity=0.118  Sum_probs=132.7

Q ss_pred             eEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      +++++||++.|++... ...+++|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....      
T Consensus         2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (287)
T PRK13641          2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLK---PSSGTITIAGYHITPETGNK   78 (287)
T ss_pred             EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            6899999999974210 1126799999999999999999999999999999999998   99999 67774321      


Q ss_pred             ------CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHh
Q 025366          149 ------PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (254)
Q Consensus       149 ------~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~  218 (254)
                            ...++ +.++.. .++.  +++.+++.+.....+.........+.++++.+++.   .+..+..||+||+||++
T Consensus        79 ~~~~~~~~ig~-v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~  155 (287)
T PRK13641         79 NLKKLRKKVSL-VFQFPEAQLFE--NTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVA  155 (287)
T ss_pred             hHHHHHhceEE-EEeChhhhhcc--chHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHH
Confidence                  12454 555531 2222  58888886644433332222334567888888885   36778899999999999


Q ss_pred             hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|++++.+|++|||||||++||+..++.+.+++.+
T Consensus       156 laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~  190 (287)
T PRK13641        156 IAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKD  190 (287)
T ss_pred             HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998864

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-32  Score=242.54  Aligned_cols=171  Identities=12%  Similarity=0.136  Sum_probs=135.0

Q ss_pred             eEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      +|+++||++.|++... ...+++++||+|++|++++|+|+||||||||+++|+|+++   |++|+ .+++...       
T Consensus         2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~~~~~~~~~   78 (305)
T PRK13651          2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLL---PDTGTIEWIFKDEKNKKKTK   78 (305)
T ss_pred             EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEEeceecccccccc
Confidence            5899999999975311 1126799999999999999999999999999999999998   99999 5554211       


Q ss_pred             -------------------------CCCeEEEeeCCC-CCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC
Q 025366          148 -------------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ  201 (254)
Q Consensus       148 -------------------------~~~~g~~i~~~~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~  201 (254)
                                               ....|+ +.++. ..++.  .++.+++.+.....+.........+.++++.+++.
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~-v~Q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~  155 (305)
T PRK13651         79 EKEKVLEKLVIQKTRFKKIKKIKEIRRRVGV-VFQFAEYQLFE--QTIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLD  155 (305)
T ss_pred             cccccccccccccccccccchHHHHHhceEE-EeeCccccccc--ccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCC
Confidence                                     112455 55543 22332  48888887765555554434455678889998885


Q ss_pred             ---CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          202 ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       202 ---~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                         .+.++..||+||+||+++|++|+.+|++|||||||++||+..++.+.++|.+
T Consensus       156 ~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~  210 (305)
T PRK13651        156 ESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDN  210 (305)
T ss_pred             hhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence               4678889999999999999999999999999999999999999999998853

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=3.4e-32  Score=243.92  Aligned_cols=178  Identities=12%  Similarity=0.135  Sum_probs=133.4

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc-CCCCce-ecCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQVK-----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~-~p~~G~-~~~~~~~-----  147 (254)
                      |++|+++||++.|+.......+++|+||+|++||++||+|+||||||||+++|+|+++.. .|++|+ .++|...     
T Consensus         1 ~~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~   80 (330)
T PRK15093          1 MPLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CCeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCH
Confidence            468999999999953212233779999999999999999999999999999999998411 247899 6676422     


Q ss_pred             -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc---CC--CC-CccHHHHHHHHHhhccCC-----CCCCCCC
Q 025366          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GA--PW-TFNPLLLLNCLKNLRNQG-----SVYAPSF  209 (254)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~---g~--~~-~~~~~~~~~~l~~l~l~~-----~~~~~~l  209 (254)
                             ....+. +.++.....++.+++.+++.+.....   +.  .. ......+.++++.+++..     +.++.+|
T Consensus        81 ~~~~~~~~~~i~~-v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~L  159 (330)
T PRK15093         81 RERRKLVGHNVSM-IFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYEL  159 (330)
T ss_pred             HHHHHHhCCCEEE-EecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhC
Confidence                   113454 67765433333456766665432211   10  01 122346788999998863     5788899


Q ss_pred             ChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       210 S~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||+||++||+||+.+|++||+||||++||+..+.++.++|.+
T Consensus       160 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~  203 (330)
T PRK15093        160 TEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTR  203 (330)
T ss_pred             CHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999864

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=100.00  E-value=2.7e-32  Score=232.17  Aligned_cols=165  Identities=16%  Similarity=0.125  Sum_probs=128.6

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh-----cccCCCCce-ecCCCCC----
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI-----NKIWPQKAS-SFDSQVK----  147 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll-----~~~~p~~G~-~~~~~~~----  147 (254)
                      |+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|++     +   |++|+ .++|...    
T Consensus         1 i~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~---~~~G~i~~~g~~~~~~~   73 (227)
T cd03260           1 IELRDLNVYYGDKH----ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGA---PDEGEVLLDGKDIYDLD   73 (227)
T ss_pred             CEEEEEEEEcCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCC---CCCeEEEECCEEhhhcc
Confidence            46899999998743    679999999999999999999999999999999998     7   99999 5666421    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC-ccHHHHHHHHHhhccCC--CCC--CCCCChhhhhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQG--SVY--APSFDHGVGDP  216 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~~--~~~--~~~lS~G~~qr  216 (254)
                            ....++ +.++... +  .+++.+++.+.....+.... .....+.++++.+++..  +..  +..||+||+||
T Consensus        74 ~~~~~~~~~i~~-~~q~~~~-~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qr  149 (227)
T cd03260          74 VDVLELRRRVGM-VFQKPNP-F--PGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQR  149 (227)
T ss_pred             hHHHHHHhhEEE-EecCchh-c--cccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHH
Confidence                  112444 5555432 2  26888887664433332211 12345677888888763  233  58999999999


Q ss_pred             HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus       150 v~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  186 (227)
T cd03260         150 LCLARALANEPEVLLLDEPTSALDPISTAKIEELIAE  186 (227)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998864

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=100.00  E-value=4e-32  Score=243.32  Aligned_cols=176  Identities=14%  Similarity=0.172  Sum_probs=134.9

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Cce-ecCCCCC--
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK--  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~---~G~-~~~~~~~--  147 (254)
                      .+++|+++||++.|+.....+.+++||||+|++||++||+|+||||||||+++|+|+++   |+   +|+ .++|...  
T Consensus         9 ~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~---p~~~~sG~I~~~G~~i~~   85 (330)
T PRK09473          9 ADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLA---ANGRIGGSATFNGREILN   85 (330)
T ss_pred             CCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCCCCeEEEECCEECCc
Confidence            46789999999999642222347799999999999999999999999999999999997   65   898 6776432  


Q ss_pred             ---------C-CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-CCCCccHHHHHHHHHhhccCC-----CCCCCCCCh
Q 025366          148 ---------P-PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH  211 (254)
Q Consensus       148 ---------~-~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~  211 (254)
                               + ..++. +.++.....++.+++.+++.+.....+ .........+.++++.+++..     +.++.+|||
T Consensus        86 ~~~~~~~~~r~~~i~~-v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSg  164 (330)
T PRK09473         86 LPEKELNKLRAEQISM-IFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSG  164 (330)
T ss_pred             CCHHHHHHHhcCCEEE-EEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCH
Confidence                     1 23454 677754333444677776654333322 222222345677888887752     458889999


Q ss_pred             hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+||++||+||+.+|++||+||||++||...+.++.++|.+
T Consensus       165 G~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~  206 (330)
T PRK09473        165 GMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNE  206 (330)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998853

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.8e-32  Score=234.30  Aligned_cols=167  Identities=17%  Similarity=0.140  Sum_probs=129.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      +++++|+++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus         2 ~l~~~~l~~~~~~~--~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   74 (242)
T PRK11124          2 SIQLNGINCFYGAH--Q--ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSD   74 (242)
T ss_pred             EEEEEeeEEEECCe--e--eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEecccccccch
Confidence            58999999999863  3  5699999999999999999999999999999999997   99999 6666421        


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHH-HHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE  218 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~-~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~  218 (254)
                            ....++ +.++...+.  .+++.+++... ....+.........+.++++.+++.  .+..+..||+||+||++
T Consensus        75 ~~~~~~~~~i~~-~~q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~  151 (242)
T PRK11124         75 KAIRELRRNVGM-VFQQYNLWP--HLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVA  151 (242)
T ss_pred             hhHHHHHhheEE-EecCccccC--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHH
Confidence                  112343 555433222  25788877542 2223332222234567778888775  36677899999999999


Q ss_pred             hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|++++.+|+++|+||||++||+.+++.+.+++.+
T Consensus       152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~  186 (242)
T PRK11124        152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRE  186 (242)
T ss_pred             HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998863

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=2.2e-32  Score=234.85  Aligned_cols=169  Identities=18%  Similarity=0.221  Sum_probs=129.3

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |.++++++|++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus         1 ~~~l~~~~l~~~~~~~--~--~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~   73 (241)
T PRK10895          1 MATLTAKNLAKAYKGR--R--VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP---RDAGNIIIDDEDISLLPLH   73 (241)
T ss_pred             CceEEEeCcEEEeCCE--E--EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence            4579999999999863  2  6699999999999999999999999999999999997   99999 5666321      


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-CCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                         ....++ +.++...+.  .+++.+++.+.....+ .........+.++++.+++.  .+..+..||+||+||+++|+
T Consensus        74 ~~~~~~i~~-~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  150 (241)
T PRK10895         74 ARARRGIGY-LPQEASIFR--RLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIAR  150 (241)
T ss_pred             HHHHhCeEE-eccCCcccc--cCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHH
Confidence               122343 555433222  2577787765432111 11112234567778877765  35677899999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++.+|++||+||||++||+..++.+.+++.+
T Consensus       151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (241)
T PRK10895        151 ALAANPKFILLDEPFAGVDPISVIDIKRIIEH  182 (241)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999888753

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=100.00  E-value=1.5e-32  Score=236.03  Aligned_cols=167  Identities=19%  Similarity=0.209  Sum_probs=127.5

Q ss_pred             eEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      +++++||++.|+ +.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus         1 ~l~~~~l~~~~~~~~--~--il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   73 (243)
T TIGR02315         1 MLEVENLSKVYPNGK--Q--ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVE---PSSGSILLEGTDITKLRGKK   73 (243)
T ss_pred             CeEEEeeeeecCCCc--c--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCccEEEECCEEhhhCCHHH
Confidence            478999999997 43  2  5699999999999999999999999999999999997   99999 6666321       


Q ss_pred             ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH--------cCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhh
Q 025366          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV  213 (254)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~  213 (254)
                          ....++ +.++...++  .+++.+++.+....        .+.........+.++++.+++.  .+..+..||+||
T Consensus        74 ~~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~  150 (243)
T TIGR02315        74 LRKLRRRIGM-IFQHYNLIE--RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQ  150 (243)
T ss_pred             HHHHHhheEE-EcCCCcccc--cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence                112444 555433222  25777776542111        0111112234567788888775  366788999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|+|++.+|++||+||||++||+..++.+.++|.+
T Consensus       151 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  190 (243)
T TIGR02315       151 QQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKR  190 (243)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998853

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.2e-32  Score=238.94  Aligned_cols=167  Identities=19%  Similarity=0.175  Sum_probs=127.8

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      ||+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 ml~~~~l~~~~~~~~----il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~   73 (271)
T PRK13638          1 MLATSDLWFRYQDEP----VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR---PQKGAVLWQGKPLDYSKRGLL   73 (271)
T ss_pred             CeEEEEEEEEcCCcc----cccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCccEEEECCEEcccccCCHH
Confidence            488999999998633    6699999999999999999999999999999999997   99999 56664321       


Q ss_pred             ---CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       149 ---~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         ...++ +.++.. .++.  .++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|++
T Consensus        74 ~~~~~i~~-v~q~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~lara  150 (271)
T PRK13638         74 ALRQQVAT-VFQDPEQQIFY--TDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGA  150 (271)
T ss_pred             HHHhheEE-EeeChhhcccc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHH
Confidence               12344 555432 1221  35566665543333332222233456777777764  466788999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+.+|++|||||||++||+..+..+.++|.+
T Consensus       151 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  181 (271)
T PRK13638        151 LVLQARYLLLDEPTAGLDPAGRTQMIAIIRR  181 (271)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998864

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=100.00  E-value=1.4e-32  Score=243.63  Aligned_cols=159  Identities=15%  Similarity=0.148  Sum_probs=126.0

Q ss_pred             eecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CCCeEEEee
Q 025366           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PPDVATVLP  156 (254)
Q Consensus        85 ~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~~~g~~i~  156 (254)
                      |.|++..    +++++||++++|+++||+||||||||||+|+|+|+++   |++|+ .++|...       ....|+ +.
T Consensus         1 k~y~~~~----~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~   72 (302)
T TIGR01188         1 KVYGDFK----AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR---PTSGTARVAGYDVVREPRKVRRSIGI-VP   72 (302)
T ss_pred             CeeCCee----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccCHHHHHhhcEE-ec
Confidence            4576532    6799999999999999999999999999999999997   99999 6666422       123455 55


Q ss_pred             CCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeC
Q 025366          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (254)
Q Consensus       157 ~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDE  234 (254)
                      ++...+  +.+++.+++.+....++.........+.++++.+++.  .+.++..||+||+||+++|+|++.+|++|||||
T Consensus        73 q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDE  150 (302)
T TIGR01188        73 QYASVD--EDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDE  150 (302)
T ss_pred             CCCCCC--CCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence            544322  2378889887765555543222344577888888886  467788999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHhhc
Q 025366          235 NYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       235 p~~~lD~~~~~~l~~ll~~  253 (254)
                      ||++||+..++.+.+++.+
T Consensus       151 Pt~gLD~~~~~~l~~~l~~  169 (302)
T TIGR01188       151 PTTGLDPRTRRAIWDYIRA  169 (302)
T ss_pred             CCcCCCHHHHHHHHHHHHH
Confidence            9999999999999998864

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=4e-32  Score=237.99  Aligned_cols=170  Identities=15%  Similarity=0.136  Sum_probs=132.1

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (254)
                      |++++++||++.|++. ..  +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|....     
T Consensus         1 ~~~l~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~   74 (277)
T PRK13652          1 MHLIETRDLCYSYSGS-KE--ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK---PTSGSVLIRGEPITKENIR   74 (277)
T ss_pred             CceEEEEEEEEEeCCC-Cc--eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence            5689999999999642 12  6799999999999999999999999999999999997   99999 66664221     


Q ss_pred             ---CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       149 ---~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         ...++ +.++.. .++.  .++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+|
T Consensus        75 ~~~~~i~~-v~q~~~~~~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~lara  151 (277)
T PRK13652         75 EVRKFVGL-VFQNPDDQIFS--PTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGV  151 (277)
T ss_pred             HHHhheEE-EecCccccccc--ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHH
Confidence               12454 555532 2222  57888876544333332222234567788887775  466788999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+.+|++||+||||++||+.+++.+.+++.+
T Consensus       152 L~~~p~llilDEPt~gLD~~~~~~l~~~l~~  182 (277)
T PRK13652        152 IAMEPQVLVLDEPTAGLDPQGVKELIDFLND  182 (277)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998853

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.6e-32  Score=239.40  Aligned_cols=171  Identities=13%  Similarity=0.123  Sum_probs=134.5

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++++++||++.|++.. ...+|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|+ .++|....      
T Consensus         3 ~~l~~~~l~~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (279)
T PRK13650          3 NIIEVKNLTFKYKEDQ-EKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE---AESGQIIIDGDLLTEENVWD   78 (279)
T ss_pred             ceEEEEeEEEEcCCCC-cCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence            4799999999997421 1126799999999999999999999999999999999998   99999 67764321      


Q ss_pred             --CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       149 --~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                        ...+. +.++.. .+..  .++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+|+
T Consensus        79 ~~~~i~~-v~q~~~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral  155 (279)
T PRK13650         79 IRHKIGM-VFQNPDNQFVG--ATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAV  155 (279)
T ss_pred             HHhhceE-EEcChHHhccc--ccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence              23454 555532 2222  57888887655444443323345677888888886  4677889999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++||+||||++||+..++.+.+++.+
T Consensus       156 ~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  185 (279)
T PRK13650        156 AMRPKIIILDEATSMLDPEGRLELIKTIKG  185 (279)
T ss_pred             HcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998753

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=100.00  E-value=3.7e-32  Score=228.50  Aligned_cols=163  Identities=17%  Similarity=0.113  Sum_probs=127.9

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----CC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----PD  150 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----~~  150 (254)
                      +++++||++.|++..    +++++||+|++|++++|+|+||||||||+++|+|+++   |++|+ .++|....     ..
T Consensus         2 ~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   74 (207)
T PRK13539          2 MLEGEDLACVRGGRV----LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP---PAAGTIKLDGGDIDDPDVAEA   74 (207)
T ss_pred             EEEEEeEEEEECCeE----EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEeCcchhhHhh
Confidence            589999999998633    6799999999999999999999999999999999997   99999 56664211     12


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      .++ +.++...+  ...++.+++.+.....+    .....+.++++.+++..  +.++..||+||+||+++|++++.+|+
T Consensus        75 ~~~-~~~~~~~~--~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~  147 (207)
T PRK13539         75 CHY-LGHRNAMK--PALTVAENLEFWAAFLG----GEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRP  147 (207)
T ss_pred             cEE-ecCCCcCC--CCCcHHHHHHHHHHhcC----CcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCC
Confidence            343 33332221  22577787765433222    12245678888887753  66778999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+||||++||+..++++.++|.+
T Consensus       148 llllDEPt~~LD~~~~~~l~~~l~~  172 (207)
T PRK13539        148 IWILDEPTAALDAAAVALFAELIRA  172 (207)
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998864

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=100.00  E-value=2.3e-32  Score=233.80  Aligned_cols=166  Identities=19%  Similarity=0.168  Sum_probs=128.0

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC--------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~--------  148 (254)
                      ++++||++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....        
T Consensus         1 l~~~~l~~~~~~~--~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (236)
T cd03219           1 LEVRGLTKRFGGL--V--ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR---PTSGSVLFDGEDITGLPPHEIA   73 (236)
T ss_pred             CeeeeeEEEECCE--E--EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEECCCCCHHHHH
Confidence            4688999999863  2  5699999999999999999999999999999999997   99999 56663221        


Q ss_pred             -CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC----------CCccHHHHHHHHHhhccC--CCCCCCCCChhhhh
Q 025366          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP----------WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD  215 (254)
Q Consensus       149 -~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~----------~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~q  215 (254)
                       ...++ +.++...+.  .+++.+++.+.....+..          .......+.++++.+++.  .+..+.+||+||+|
T Consensus        74 ~~~i~~-v~q~~~l~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~q  150 (236)
T cd03219          74 RLGIGR-TFQIPRLFP--ELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQR  150 (236)
T ss_pred             hcCEEE-Eeccccccc--CCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHH
Confidence             12343 455433222  268888876654332211          111233567788888775  35677899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|+|++.+|++||+||||++||+.+++.+.+++.+
T Consensus       151 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  188 (236)
T cd03219         151 RLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRE  188 (236)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998853

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=100.00  E-value=2.9e-32  Score=240.18  Aligned_cols=171  Identities=15%  Similarity=0.126  Sum_probs=134.4

Q ss_pred             eEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ||+++||++.|+.... ...+++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus         1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~   77 (288)
T PRK13643          1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ---PTEGKVTVGDIVVSSTSKQK   77 (288)
T ss_pred             CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4889999999974211 1126799999999999999999999999999999999997   99999 6776432       


Q ss_pred             -----CCCeEEEeeCCC-CCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHh
Q 025366          148 -----PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (254)
Q Consensus       148 -----~~~~g~~i~~~~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~  218 (254)
                           ....|+ +.++. ..++.  .++.+++.+.....+.+.......+.++++.+++.   .+..+..||+||+||++
T Consensus        78 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrva  154 (288)
T PRK13643         78 EIKPVRKKVGV-VFQFPESQLFE--ETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVA  154 (288)
T ss_pred             cHHHHHhhEEE-EecCcchhccc--chHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHH
Confidence                 123454 55553 22332  48888887766555543333345567888888874   36778899999999999


Q ss_pred             hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|++|+.+|++|||||||++||+.+++.+.+++.+
T Consensus       155 iA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~  189 (288)
T PRK13643        155 IAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFES  189 (288)
T ss_pred             HHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998853

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=100.00  E-value=3.8e-32  Score=233.05  Aligned_cols=166  Identities=19%  Similarity=0.175  Sum_probs=127.0

Q ss_pred             EEEecceeeccc-ccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           78 VEARCMDEVYDA-LAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        78 l~i~~l~~~y~~-~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      ++++||++.|++ ..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 l~~~~l~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   73 (241)
T cd03256           1 IEVENLSKTYPNGKK----ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVE---PTSGSVLIDGTDINKLKGKAL   73 (241)
T ss_pred             CEEeeEEEecCCccE----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEEECCEeccccCHhHH
Confidence            468899999975 32    6799999999999999999999999999999999997   99999 66664221       


Q ss_pred             ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH--------cCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhh
Q 025366          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVG  214 (254)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~  214 (254)
                          ...++ +.++...+.  .+++.+++.+....        .+.........+.++++.+++.  .+..+.+||+||+
T Consensus        74 ~~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~  150 (241)
T cd03256          74 RQLRRQIGM-IFQQFNLIE--RLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQ  150 (241)
T ss_pred             HHHHhccEE-EcccCcccc--cCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHH
Confidence                12343 555433222  25777777543211        1111122334567788888775  3667889999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|++++.+|+||||||||++||+..++.+.++|.+
T Consensus       151 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  189 (241)
T cd03256         151 QRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKR  189 (241)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998854

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=100.00  E-value=4.9e-32  Score=233.84  Aligned_cols=172  Identities=17%  Similarity=0.083  Sum_probs=131.0

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCce-ecCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~--~~p~~G~-~~~~~~~----  147 (254)
                      |++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++.  ..|++|+ .++|...    
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~   76 (250)
T PRK14247          1 MNKIEIRDLKVSFGQVE----VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMD   76 (250)
T ss_pred             CceEEEEeeEEEECCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCC
Confidence            56899999999998632    66999999999999999999999999999999999851  0136999 5666422    


Q ss_pred             ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC--CCccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (254)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~--~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (254)
                          ....++ +.++...+.  .+++.+++.+.....+..  .......+.++++.+++.      .+..+.+||+||+|
T Consensus        77 ~~~~~~~i~~-v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q  153 (250)
T PRK14247         77 VIELRRRVQM-VFQIPNPIP--NLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQ  153 (250)
T ss_pred             HHHHhccEEE-EeccCccCC--CCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHH
Confidence                123454 555543222  268888887643322221  111234567788888763      35677899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|+|++.+|++||+||||++||+..++.+.++|.+
T Consensus       154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~  191 (250)
T PRK14247        154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLE  191 (250)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=100.00  E-value=3.6e-32  Score=233.37  Aligned_cols=167  Identities=16%  Similarity=0.189  Sum_probs=129.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      +++++|+++.|++.  .  +++|+||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 ~l~~~~l~~~~~~~--~--il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   73 (240)
T PRK09493          1 MIEFKNVSKHFGPT--Q--VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE---ITSGDLIVDGLKVNDPKVDER   73 (240)
T ss_pred             CEEEEeEEEEECCe--E--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCChhHH
Confidence            47899999999863  2  5699999999999999999999999999999999997   99999 66663221       


Q ss_pred             ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         ...++ +.++...++  .+++.+++.+... ..+.........+.++++.+++.  .+..+..||+||+||+++|++
T Consensus        74 ~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~a  150 (240)
T PRK09493         74 LIRQEAGM-VFQQFYLFP--HLTALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARA  150 (240)
T ss_pred             HHhhceEE-EecccccCC--CCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHH
Confidence               12344 555433222  2578887765332 12222222334567788888775  356778999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|++||+||||++||+.+++.+.+++.+
T Consensus       151 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~  181 (240)
T PRK09493        151 LAVKPKLMLFDEPTSALDPELRHEVLKVMQD  181 (240)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998853

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=99.98  E-value=3.3e-32  Score=230.75  Aligned_cols=164  Identities=18%  Similarity=0.170  Sum_probs=125.0

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (254)
                      |+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...         
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   73 (222)
T cd03224           1 LEVENLNAGYGKSQ----ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP---PRSGSIRFDGRDITGLPPHERA   73 (222)
T ss_pred             CEEeeEEeecCCee----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCCCCHHHHH
Confidence            46899999998632    6699999999999999999999999999999999997   99999 6666321         


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhh-ccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l-~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                      ....++ +.++...+  +.+++.+++.+.....+  ..........+++.+ .+.  .+..+.+||+||+||+++|++++
T Consensus        74 ~~~i~~-~~q~~~~~--~~~t~~~~l~~~~~~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~  148 (222)
T cd03224          74 RAGIGY-VPEGRRIF--PELTVEENLLLGAYARR--RAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALM  148 (222)
T ss_pred             hcCeEE-eccccccC--CCCcHHHHHHHHhhhcC--chhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence            112444 45544322  23678888766443222  111223344556655 233  46778899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|++||+||||++||+..++.+.+++.+
T Consensus       149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~  177 (222)
T cd03224         149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRE  177 (222)
T ss_pred             cCCCEEEECCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998864

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=99.98  E-value=5.4e-32  Score=233.30  Aligned_cols=166  Identities=16%  Similarity=0.134  Sum_probs=129.7

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Cce-ecCCCCCC--
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVKP--  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~-~~~~~~~~--  148 (254)
                      +++++||++.|++..    +++++||++++|++++|+|+||||||||+++|+|+++   |+     +|+ .++|....  
T Consensus         1 ~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~~~~~~G~i~~~g~~~~~~   73 (247)
T TIGR00972         1 AIEIENLNLFYGEKE----ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMND---LVPGVRIEGKVLFDGQDIYDK   73 (247)
T ss_pred             CEEEEEEEEEECCee----eecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceEEEECCEEcccc
Confidence            478999999998632    6699999999999999999999999999999999997   88     999 56664321  


Q ss_pred             --------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC------CCCCCCCCChhh
Q 025366          149 --------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (254)
Q Consensus       149 --------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~  213 (254)
                              ...++ +.++.. ++.  .++.+++.+.....+. ...........+++.+++.      .+.++..||+||
T Consensus        74 ~~~~~~~~~~i~~-v~q~~~-~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~  149 (247)
T TIGR00972        74 KIDVVELRRRVGM-VFQKPN-PFP--MSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQ  149 (247)
T ss_pred             ccchHHHHhheEE-EecCcc-cCC--CCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHH
Confidence                    12444 555433 222  5788887654433332 2222234567788888875      356778999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus       150 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  189 (247)
T TIGR00972       150 QQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE  189 (247)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=99.98  E-value=4.3e-32  Score=235.35  Aligned_cols=162  Identities=13%  Similarity=0.087  Sum_probs=128.7

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCe
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDV  151 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~  151 (254)
                      ++|+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++...   ....
T Consensus        11 ~~l~i~~l~~~~~~~~----il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~i   83 (257)
T PRK11247         11 TPLLLNAVSKRYGERT----VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET---PSAGELLAGTAPLAEAREDT   83 (257)
T ss_pred             CcEEEEEEEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEHHHhhCce
Confidence            6799999999998633    5699999999999999999999999999999999997   99999 5555321   2334


Q ss_pred             EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcE
Q 025366          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (254)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~v  229 (254)
                      ++ +.++...+.  .+++.+++.+..     .. .....+.++++.+++.  .+..+..||+||+||+++|++++.+|++
T Consensus        84 ~~-v~q~~~l~~--~~tv~enl~~~~-----~~-~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~l  154 (257)
T PRK11247         84 RL-MFQDARLLP--WKKVIDNVGLGL-----KG-QWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGL  154 (257)
T ss_pred             EE-EecCccCCC--CCcHHHHHHhcc-----cc-hHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            54 555543222  257777765421     11 1234567788888875  3667889999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       230 lIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+||||++||+..++.+.++|.+
T Consensus       155 llLDEPt~~LD~~~~~~l~~~L~~  178 (257)
T PRK11247        155 LLLDEPLGALDALTRIEMQDLIES  178 (257)
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999888753

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=99.98  E-value=7.8e-33  Score=231.96  Aligned_cols=170  Identities=21%  Similarity=0.278  Sum_probs=134.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CC--
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PP--  149 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~--  149 (254)
                      +++++++|+|+||+..    |++||||++++||+++|+||||||||||+++|+|+++   |++|+ .++|+..   ++  
T Consensus         3 ~lL~v~~l~k~FGGl~----Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~---P~~G~v~~~G~~it~l~p~~   75 (250)
T COG0411           3 PLLEVRGLSKRFGGLT----AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYK---PSSGTVIFRGRDITGLPPHR   75 (250)
T ss_pred             ceeeeccceeecCCEE----EEeceeEEEcCCeEEEEECCCCCCceeeeeeeccccc---CCCceEEECCcccCCCCHHH
Confidence            6789999999999976    8899999999999999999999999999999999998   99999 6777532   11  


Q ss_pred             --CeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-------CCC-----CCccHHHHHHHHHhhccC--CCCCCCCCChhh
Q 025366          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAP-----WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV  213 (254)
Q Consensus       150 --~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-------g~~-----~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~  213 (254)
                        ..|..=.++--.++ +.+|+.||+.......       +.+     +....++..++++.+++.  .+....+||+|+
T Consensus        76 iar~Gi~RTFQ~~rlF-~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~LsyG~  154 (250)
T COG0411          76 IARLGIARTFQITRLF-PGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNLSYGQ  154 (250)
T ss_pred             HHhccceeeccccccc-CCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCChhH
Confidence              22322122222222 3489999987653311       111     122345668888888887  466778999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|+.||+||+.+|++|+||||.+|+.+....++.++|.+
T Consensus       155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~  194 (250)
T COG0411         155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRE  194 (250)
T ss_pred             hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988864

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=6.4e-32  Score=233.55  Aligned_cols=170  Identities=14%  Similarity=0.072  Sum_probs=129.6

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCC
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~  147 (254)
                      |+++|+++||++.|++..    +++|+||++++|++++|+||||||||||+++|+|+++   |     ++|+ .++|...
T Consensus         1 ~~~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i   73 (253)
T PRK14267          1 MKFAIETVNLRVYYGSNH----VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE---LNEEARVEGEVRLFGRNI   73 (253)
T ss_pred             CcceEEEEeEEEEeCCee----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---cccCCCCceEEEECCEEc
Confidence            356899999999998633    6699999999999999999999999999999999986   5     4899 5666422


Q ss_pred             C----------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC--CCCccHHHHHHHHHhhccC------CCCCCCCC
Q 025366          148 P----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ------GSVYAPSF  209 (254)
Q Consensus       148 ~----------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~--~~~~~~~~~~~~l~~l~l~------~~~~~~~l  209 (254)
                      .          ...++ +.++...+.  .+++.+++.+.....+.  ........+.++++.+++.      .+..+..|
T Consensus        74 ~~~~~~~~~~~~~i~~-~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L  150 (253)
T PRK14267         74 YSPDVDPIEVRREVGM-VFQYPNPFP--HLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNL  150 (253)
T ss_pred             cccccChHHHhhceeE-EecCCccCC--CCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhC
Confidence            1          12343 555543222  26788887654332222  1111223456777777653      35677899


Q ss_pred             ChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       210 S~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+||+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus       151 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  194 (253)
T PRK14267        151 SGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFE  194 (253)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998864

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=99.98  E-value=8e-32  Score=233.71  Aligned_cols=169  Identities=15%  Similarity=0.167  Sum_probs=128.0

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC-----CC-
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-----KP-  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~-----~~-  148 (254)
                      ++++++||++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|..     .. 
T Consensus         5 ~~l~~~~l~~~~~~~--~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~i~~   77 (258)
T PRK11701          5 PLLSVRGLTKLYGPR--K--GCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLA---PDAGEVHYRMRDGQLRDLYA   77 (258)
T ss_pred             ceEEEeeeEEEcCCc--e--eeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCcccccccccc
Confidence            579999999999863  2  5699999999999999999999999999999999997   99999 666643     11 


Q ss_pred             -----------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC---CCCCCCCCChhh
Q 025366          149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV  213 (254)
Q Consensus       149 -----------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~  213 (254)
                                 ...++ +.++........++..+++.+.....+.. .........++++.+++.   .+..+..||+||
T Consensus        78 ~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq  156 (258)
T PRK11701         78 LSEAERRRLLRTEWGF-VHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGM  156 (258)
T ss_pred             CCHHHHHHHhhcceEE-EeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHH
Confidence                       12444 55554211222245555654322222211 111234556788888875   256788999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +||+++|+|++.+|+|||+||||++||+.+++.+.+++.
T Consensus       157 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~  195 (258)
T PRK11701        157 QQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLR  195 (258)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999875

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=5.7e-32  Score=237.75  Aligned_cols=169  Identities=17%  Similarity=0.151  Sum_probs=133.6

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ++|+++||++.|++. ..  +++++||++++||+++|+|+||||||||+++|+|+++   |++|+ .++|...       
T Consensus         4 ~~l~~~~l~~~~~~~-~~--~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~---p~~G~i~i~g~~~~~~~~~~   77 (283)
T PRK13636          4 YILKVEELNYNYSDG-TH--ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILK---PSSGRILFDGKPIDYSRKGL   77 (283)
T ss_pred             ceEEEEeEEEEeCCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCccEEEECCEECCCCcchH
Confidence            479999999999631 22  6699999999999999999999999999999999997   99999 6676432       


Q ss_pred             ---CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          148 ---PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       148 ---~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                         ....|+ +.++.. .++.  .++.+++.+.....+++.......+..+++.+++.  .+.++..||+||+||+++|+
T Consensus        78 ~~~~~~ig~-v~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~lar  154 (283)
T PRK13636         78 MKLRESVGM-VFQDPDNQLFS--ASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG  154 (283)
T ss_pred             HHHHhhEEE-EecCcchhhcc--ccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHH
Confidence               123454 555532 2222  57888887654444443333335567788888876  46788899999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+.+|++||+||||++||+..+..+.+++.+
T Consensus       155 aL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~  186 (283)
T PRK13636        155 VLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVE  186 (283)
T ss_pred             HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999988753

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=5.8e-32  Score=237.21  Aligned_cols=170  Identities=16%  Similarity=0.141  Sum_probs=133.1

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ++++++||++.|++..+.  +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus         4 ~~l~~~~l~~~~~~~~~~--~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~---p~~G~i~~~g~~i~~~~~~~   78 (279)
T PRK13635          4 EIIRVEHISFRYPDAATY--ALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL---PEAGTITVGGMVLSEETVWD   78 (279)
T ss_pred             ceEEEEEEEEEeCCCCcc--ceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCcHHH
Confidence            479999999999752222  6799999999999999999999999999999999998   99999 6777432       


Q ss_pred             -CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       148 -~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                       ....++ +.++.. .+..  .++.+++.+.....+.........+..+++.+++.  .+..+..||+||+||+++|+++
T Consensus        79 ~~~~i~~-~~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral  155 (279)
T PRK13635         79 VRRQVGM-VFQNPDNQFVG--ATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVL  155 (279)
T ss_pred             HhhheEE-EEeCHHHhccc--ccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence             123454 555531 2222  57888886654444433222234567788877775  4567889999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++||+||||++||+..+..+.++|.+
T Consensus       156 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  185 (279)
T PRK13635        156 ALQPDIIILDEATSMLDPRGRREVLETVRQ  185 (279)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998853

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.98  E-value=7.7e-32  Score=233.84  Aligned_cols=172  Identities=15%  Similarity=0.119  Sum_probs=130.3

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC---
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~---  147 (254)
                      .+++++++|+++.|++..    +++|+||++++|++++|+|+||||||||+++|+|+++..  +|++|+ .++|...   
T Consensus         9 ~~~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~   84 (258)
T PRK14268          9 AQPQIKVENLNLWYGEKQ----ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEP   84 (258)
T ss_pred             cceeEEEeeeEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccc
Confidence            367899999999998632    569999999999999999999999999999999998510  137999 5666321   


Q ss_pred             -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (254)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (254)
                             ....++ +.++.. ++.  .++.+++.+.....+.........+.++++.+++.      .+..+..||+||+
T Consensus        85 ~~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~  160 (258)
T PRK14268         85 DVDVVELRKNVGM-VFQKPN-PFP--MSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQ  160 (258)
T ss_pred             cchHHHHhhhEEE-EecCCc-cCc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHH
Confidence                   112344 454433 222  58888887654333332211223456677777652      3567789999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|+||+.+|++||+||||++||+.++..+.++|.+
T Consensus       161 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  199 (258)
T PRK14268        161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN  199 (258)
T ss_pred             HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.98  E-value=4.3e-32  Score=251.48  Aligned_cols=177  Identities=19%  Similarity=0.208  Sum_probs=147.6

Q ss_pred             CcceEEEecceeecccc-------cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCC
Q 025366           74 EIPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~-------~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~  145 (254)
                      ..++++++||+|.|...       ...+.|++||||++.+||++||+|+||||||||+|+|+|++.   |++|+ .++|.
T Consensus       277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~---P~~G~i~~~g~  353 (539)
T COG1123         277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLP---PSSGSIIFDGQ  353 (539)
T ss_pred             cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEEeCc
Confidence            35789999999999841       234678999999999999999999999999999999999998   99999 66664


Q ss_pred             CC---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC---CCCCCCCCChh
Q 025366          146 VK---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG  212 (254)
Q Consensus       146 ~~---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G  212 (254)
                      ..         ......++.+|.+.-.++.+++.+.+.......+. .......++.++++.+++.   .++++++||||
T Consensus       354 ~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSGG  433 (539)
T COG1123         354 DLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGG  433 (539)
T ss_pred             ccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCcc
Confidence            31         01234568888887777778998888777665543 2233345678889999987   57899999999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||++|||||+.+|++||+|||++.||+..+..+.++|.+
T Consensus       434 QrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~  474 (539)
T COG1123         434 QRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKD  474 (539)
T ss_pred             hhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999864

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=99.98  E-value=1.3e-31  Score=228.05  Aligned_cols=165  Identities=16%  Similarity=0.175  Sum_probs=129.9

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ++|+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus         6 ~~i~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   78 (225)
T PRK10247          6 PLLQLQNVGYLAGDAK----ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDISTLKPEI   78 (225)
T ss_pred             ceEEEeccEEeeCCce----eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEcCcCCHHH
Confidence            4799999999998633    6699999999999999999999999999999999987   99999 5666321       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al  223 (254)
                       ....++ +.++.. ++.  .++.+++.+.....+.  ......+.++++.+++.   .+.++..||+||+||+++|+++
T Consensus        79 ~~~~i~~-~~q~~~-l~~--~tv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral  152 (225)
T PRK10247         79 YRQQVSY-CAQTPT-LFG--DTVYDNLIFPWQIRNQ--QPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNL  152 (225)
T ss_pred             HHhccEE-Eecccc-ccc--ccHHHHHHhHHhhcCC--ChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence             122343 555533 232  3777877653322221  12234567888888884   3678889999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++||+||||++||+..++.+.++|.+
T Consensus       153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (225)
T PRK10247        153 QFMPKVLLLDEITSALDESNKHNVNEIIHR  182 (225)
T ss_pred             hcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999988764

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=5.1e-32  Score=237.01  Aligned_cols=168  Identities=15%  Similarity=0.089  Sum_probs=130.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      |++++||++.|++. ..  +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 ml~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   74 (274)
T PRK13644          1 MIRLENVSYSYPDG-TP--ALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR---PQKGKVLVSGIDTGDFSKLQG   74 (274)
T ss_pred             CEEEEEEEEEcCCC-Cc--eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEECCccccHHH
Confidence            47899999999632 22  6699999999999999999999999999999999997   99999 56664221       


Q ss_pred             --CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          149 --PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       149 --~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                        ...++ +.++.. .+..  .++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+|+
T Consensus        75 ~~~~i~~-v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral  151 (274)
T PRK13644         75 IRKLVGI-VFQNPETQFVG--RTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGIL  151 (274)
T ss_pred             HHhheEE-EEEChhhhccc--chHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHH
Confidence              12444 455432 1222  57888876654444433222234567778888775  4677889999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|+|||+||||++||+.++..+.+++.+
T Consensus       152 ~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  181 (274)
T PRK13644        152 TMEPECLIFDEVTSMLDPDSGIAVLERIKK  181 (274)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998853

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.98  E-value=7.1e-32  Score=234.13  Aligned_cols=167  Identities=17%  Similarity=0.198  Sum_probs=128.6

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      +++++||++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...        
T Consensus         2 ~l~~~~l~~~~~~~--~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~G~i~~~g~~~~~~~~~~~   74 (258)
T PRK13548          2 MLEARNLSVRLGGR--T--LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELS---PDSGEVRLNGRPLADWSPAEL   74 (258)
T ss_pred             eEEEEeEEEEeCCe--e--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcccCCHHHh
Confidence            58999999999863  2  5699999999999999999999999999999999997   99999 5666321        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc-
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG-  224 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~-  224 (254)
                      ....++ +.++....+  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+||+ 
T Consensus        75 ~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~  151 (258)
T PRK13548         75 ARRRAV-LPQHSSLSF--PFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQ  151 (258)
T ss_pred             hhheEE-EccCCcCCC--CCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence            122343 555433222  257777776533222211112234567788887775  36788899999999999999999 


Q ss_pred             -----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 -----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 -----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                           .+|++|||||||++||+..++.+.++|.+
T Consensus       152 ~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  185 (258)
T PRK13548        152 LWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQ  185 (258)
T ss_pred             ccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence                 59999999999999999999999998853

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=99.98  E-value=5e-32  Score=235.74  Aligned_cols=177  Identities=16%  Similarity=0.175  Sum_probs=141.5

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCce-ecCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQV-------  146 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~--~~p~~G~-~~~~~~-------  146 (254)
                      +++++||+..|......+.|++||||++++||++||+|.|||||||+.+.|+|+++.  ..-.+|+ .|+|+.       
T Consensus         1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~   80 (316)
T COG0444           1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK   80 (316)
T ss_pred             CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence            378999999998754456789999999999999999999999999999999999941  1124577 577741       


Q ss_pred             ----CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-C-CCCccHHHHHHHHHhhccC-----CCCCCCCCChhhhh
Q 025366          147 ----KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGD  215 (254)
Q Consensus       147 ----~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~-~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS~G~~q  215 (254)
                          .+.....+|.|+...-.++.+++.+.+........ . .......+..++++.+++.     .+.|+.+|||||+|
T Consensus        81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMrQ  160 (316)
T COG0444          81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQ  160 (316)
T ss_pred             HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHHH
Confidence                13334445888877666666677666655554332 2 2334566788999999987     36899999999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||.||.|++.+|++||.||||++||...+.+|.++|++
T Consensus       161 RV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~  198 (316)
T COG0444         161 RVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKE  198 (316)
T ss_pred             HHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=99.98  E-value=1.1e-31  Score=230.64  Aligned_cols=168  Identities=15%  Similarity=0.194  Sum_probs=129.3

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++++++|+++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|....      
T Consensus         1 ~~i~~~~l~~~~~~~--~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~   73 (242)
T TIGR03411         1 PILYLEGLSVSFDGF--K--ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTR---PDEGSVLFGGTDLTGLPEHQ   73 (242)
T ss_pred             CeEEEEeeEEEcCCe--E--EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCeecCCCCHHH
Confidence            368999999999863  2  6699999999999999999999999999999999997   99999 66664221      


Q ss_pred             ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-C-------CCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhh
Q 025366          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-------APWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGD  215 (254)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g-------~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~q  215 (254)
                         ...++ +.++...+.  .+++.+++.+..... .       .........+.++++.+++..  +..+..||+||+|
T Consensus        74 ~~~~~i~~-~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~q  150 (242)
T TIGR03411        74 IARAGIGR-KFQKPTVFE--NLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQ  150 (242)
T ss_pred             HHhcCeeE-eccccccCC--CCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence               12343 444433222  268888776543211 0       011112345677888887763  5678899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|+|++.+|++||+||||++||+.+++.+.+++.+
T Consensus       151 rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~  188 (242)
T TIGR03411       151 WLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKS  188 (242)
T ss_pred             HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=99.98  E-value=9.5e-32  Score=234.18  Aligned_cols=173  Identities=17%  Similarity=0.159  Sum_probs=131.3

Q ss_pred             eEEEecceeeccccc-----ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---
Q 025366           77 VVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~-----~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---  147 (254)
                      +++++||++.|++..     ....+++|+||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...   
T Consensus         2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~   78 (265)
T TIGR02769         2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEK---PAQGTVSFRGQDLYQL   78 (265)
T ss_pred             eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccc
Confidence            589999999996310     01226799999999999999999999999999999999997   99999 6666321   


Q ss_pred             --------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhh
Q 025366          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD  215 (254)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q  215 (254)
                              ....++ +.++......+.+++.+++.+..... ++........+.++++.+++.   .+..+..||+||+|
T Consensus        79 ~~~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~q  157 (265)
T TIGR02769        79 DRKQRRAFRRDVQL-VFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQ  157 (265)
T ss_pred             CHHHHHHHhhceEE-EecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHH
Confidence                    113454 55554211222367777765543322 222223345677888888874   36678899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|+|++.+|++|||||||++||+..++.+.++|.+
T Consensus       158 rv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~  195 (265)
T TIGR02769       158 RINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK  195 (265)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988854

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=99.98  E-value=9.7e-32  Score=224.36  Aligned_cols=162  Identities=16%  Similarity=0.115  Sum_probs=126.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP  149 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~  149 (254)
                      ++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...       ..
T Consensus         1 l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (198)
T TIGR01189         1 LAARNLACSRGERM----LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLR---PDSGEVRWNGTALAEQRDEPHR   73 (198)
T ss_pred             CEEEEEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEEcccchHHhhh
Confidence            46889999998733    6699999999999999999999999999999999997   99999 5666421       12


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                      ..++ +.++... + +.+++.+++.+.....+    .....+.++++.+++.  .+.++..||+||+||+++|++++.+|
T Consensus        74 ~i~~-~~q~~~~-~-~~~tv~~~l~~~~~~~~----~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p  146 (198)
T TIGR01189        74 NILY-LGHLPGL-K-PELSALENLHFWAAIHG----GAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRA  146 (198)
T ss_pred             heEE-eccCccc-c-cCCcHHHHHHHHHHHcC----CcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCC
Confidence            2343 4443222 2 22678888766443322    1133567778877775  45678899999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++||+||||++||+..++.+.+++.+
T Consensus       147 ~llllDEPt~~LD~~~~~~l~~~l~~  172 (198)
T TIGR01189       147 PLWILDEPTTALDKAGVALLAGLLRA  172 (198)
T ss_pred             CEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999998864

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=99.98  E-value=4.6e-32  Score=236.70  Aligned_cols=165  Identities=15%  Similarity=0.152  Sum_probs=129.1

Q ss_pred             EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC---------
Q 025366           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---------  148 (254)
Q Consensus        79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~---------  148 (254)
                      .++++++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....         
T Consensus        26 ~~~~~~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~---p~~G~i~i~g~~~~~~~~~~~~~   98 (269)
T cd03294          26 SKEEILKKTGQTV----GVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIE---PTSGKVLIDGQDIAAMSRKELRE   98 (269)
T ss_pred             hhhhhhhhcCCce----EeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEccccChhhhhh
Confidence            5679999998743    5699999999999999999999999999999999997   99999 66663211         


Q ss_pred             ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                         ...++ +.++...++  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+|+
T Consensus        99 ~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral  175 (269)
T cd03294          99 LRRKKISM-VFQSFALLP--HRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARAL  175 (269)
T ss_pred             hhcCcEEE-EecCcccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence               12444 555433222  268888877654333332222234567788888875  4677889999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++|||||||++||+..++.+.++|.+
T Consensus       176 ~~~p~illLDEPt~~LD~~~~~~l~~~l~~  205 (269)
T cd03294         176 AVDPDILLMDEAFSALDPLIRREMQDELLR  205 (269)
T ss_pred             hcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998753

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=99.98  E-value=9.4e-32  Score=234.49  Aligned_cols=174  Identities=16%  Similarity=0.150  Sum_probs=129.1

Q ss_pred             ceEEEecceeeccccc-----ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-
Q 025366           76 PVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~-----~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-  148 (254)
                      ++|+++||++.|+...     ....+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|.... 
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~   79 (267)
T PRK15112          3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGELLIDDHPLHF   79 (267)
T ss_pred             ceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCC
Confidence            4699999999996310     01236799999999999999999999999999999999997   99999 56663221 


Q ss_pred             -------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhH
Q 025366          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (254)
Q Consensus       149 -------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv  217 (254)
                             ...++ +.++......+.+++.+++.+..... +.........+.++++.+++.   .+..+..||+||+||+
T Consensus        80 ~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv  158 (267)
T PRK15112         80 GDYSYRSQRIRM-IFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRL  158 (267)
T ss_pred             CchhhHhccEEE-EecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHH
Confidence                   12343 55543211122245666655433222 222222234567888888874   3556789999999999


Q ss_pred             hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|++++.+|+||||||||++||+.+++.+.++|.+
T Consensus       159 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  194 (267)
T PRK15112        159 GLARALILRPKVIIADEALASLDMSMRSQLINLMLE  194 (267)
T ss_pred             HHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998864

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=99.98  E-value=1e-31  Score=232.94  Aligned_cols=168  Identities=14%  Similarity=0.143  Sum_probs=131.0

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ++++++||++.|++..    +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...       
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~   76 (257)
T PRK10619          4 NKLNVIDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGSIVVNGQTINLVRDKD   76 (257)
T ss_pred             ccEEEeeeEEEECCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEcccccccc
Confidence            4689999999998633    5699999999999999999999999999999999997   99999 5666321       


Q ss_pred             --------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCCCCCccHHHHHHHHHhhccCC---CCCCCCC
Q 025366          148 --------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSF  209 (254)
Q Consensus       148 --------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~l  209 (254)
                                    ....++ +.++...+.  .+++.+++.+... ..+.........+.++++.+++..   +.++..|
T Consensus        77 ~~~~~~~~~~~~~~~~~i~~-v~q~~~l~~--~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L  153 (257)
T PRK10619         77 GQLKVADKNQLRLLRTRLTM-VFQHFNLWS--HMTVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHL  153 (257)
T ss_pred             cccccccchHHHHHhhceEE-EecCcccCC--CCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccC
Confidence                          112344 555543222  2678888765332 222222223445678888888853   5677899


Q ss_pred             ChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       210 S~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+||+++|+||+.+|++||+||||++||+.+++.+.+++.+
T Consensus       154 S~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  197 (257)
T PRK10619        154 SGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQ  197 (257)
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998764

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=99.98  E-value=1.7e-31  Score=226.88  Aligned_cols=171  Identities=19%  Similarity=0.187  Sum_probs=129.3

Q ss_pred             eEEEecceeecccc---cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecC--CC--CC-
Q 025366           77 VVEARCMDEVYDAL---AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD--SQ--VK-  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~---~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~--~~--~~-  147 (254)
                      |++++||++.|+..   .....+++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++  |.  .. 
T Consensus         1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~~~g~~~~~~   77 (224)
T TIGR02324         1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYL---PDSGRILVRHEGAWVDLA   77 (224)
T ss_pred             CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEEecCCCccchh
Confidence            47899999999631   011226799999999999999999999999999999999997   99999 565  32  11 


Q ss_pred             -----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC---CCCCCCCChhh
Q 025366          148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGV  213 (254)
Q Consensus       148 -----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~  213 (254)
                                 ....++ +.++....  ..+++.+++.+.....+...........++++.+++..   +.++.+||+||
T Consensus        78 ~~~~~~~~~~~~~~i~~-~~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~  154 (224)
T TIGR02324        78 QASPREVLEVRRKTIGY-VSQFLRVI--PRVSALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGE  154 (224)
T ss_pred             hcCHHHHHHHHhcceEE-EecccccC--CCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHH
Confidence                       012344 55554322  23677777765433334322222345677888888753   46788999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus       155 ~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  194 (224)
T TIGR02324       155 QQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAE  194 (224)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.98  E-value=2.3e-31  Score=224.74  Aligned_cols=165  Identities=16%  Similarity=0.092  Sum_probs=129.4

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----C
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----P  149 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----~  149 (254)
                      ++++++|+++.|++..    +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|....     .
T Consensus        10 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~i~~~~~~~   82 (214)
T PRK13543         10 PLLAAHALAFSRNEEP----VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH---VESGQIQIDGKTATRGDRSR   82 (214)
T ss_pred             ceEEEeeEEEecCCce----eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCCeeEEECCEEccchhhhh
Confidence            5799999999998633    5699999999999999999999999999999999997   99999 66664321     1


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                      ..++ +.++... + ..+++.+++.+.....+.   .......++++.+++.  .+..+..||+||+||+++|++++.+|
T Consensus        83 ~i~~-~~q~~~~-~-~~~t~~e~l~~~~~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p  156 (214)
T PRK13543         83 FMAY-LGHLPGL-K-ADLSTLENLHFLCGLHGR---RAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPA  156 (214)
T ss_pred             ceEE-eecCccc-c-cCCcHHHHHHHHHHhcCC---cHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCC
Confidence            2343 4444322 2 225788877664432221   1234456777777765  46777899999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++||+||||++||+..++.+.+++.+
T Consensus       157 ~llllDEPt~~LD~~~~~~l~~~l~~  182 (214)
T PRK13543        157 PLWLLDEPYANLDLEGITLVNRMISA  182 (214)
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999998853

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=9.5e-32  Score=235.99  Aligned_cols=172  Identities=15%  Similarity=0.134  Sum_probs=132.0

Q ss_pred             ceEEEecceeecccccc--eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366           76 PVVEARCMDEVYDALAQ--RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~--~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (254)
                      ++++++||++.|++...  ...+++++||+|++|++++|+|+||||||||+++|+|+++   |++|+ .++|...     
T Consensus         3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~   79 (280)
T PRK13633          3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLI---PSEGKVYVDGLDTSDEEN   79 (280)
T ss_pred             ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccc
Confidence            57999999999974210  1126799999999999999999999999999999999997   99999 6666332     


Q ss_pred             ----CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366          148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       148 ----~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia  220 (254)
                          ....++ +.++.. .++.  .++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|
T Consensus        80 ~~~~~~~i~~-v~q~~~~~~~~--~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~la  156 (280)
T PRK13633         80 LWDIRNKAGM-VFQNPDNQIVA--TIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIA  156 (280)
T ss_pred             HHHHhhheEE-EecChhhhhcc--ccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHH
Confidence                112344 555432 2221  36677776544444433222344567788888775  4677899999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++++.+|++||+||||++||+..+..+.++|.+
T Consensus       157 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~  189 (280)
T PRK13633        157 GILAMRPECIIFDEPTAMLDPSGRREVVNTIKE  189 (280)
T ss_pred             HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998864

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=99.98  E-value=7.8e-32  Score=229.80  Aligned_cols=163  Identities=13%  Similarity=0.112  Sum_probs=124.1

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (254)
                      |+++||++.|++..    +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...         
T Consensus         1 l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (230)
T TIGR03410         1 LEVSNLNVYYGQSH----ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLP---VKSGSIRLDGEDITKLPPHERA   73 (230)
T ss_pred             CEEEeEEEEeCCeE----EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHHHHH
Confidence            46899999998632    6699999999999999999999999999999999997   99999 5666321         


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhc-c--CCCCCCCCCChhhhhhHhhhhhhc
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-N--QGSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~-l--~~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                      ....++ +.++...+  +.+++.+++.+.....+..   .......+++.++ +  ..+.++..||+||+||+++|++++
T Consensus        74 ~~~i~~-~~q~~~~~--~~~tv~~~l~~~~~~~~~~---~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~  147 (230)
T TIGR03410        74 RAGIAY-VPQGREIF--PRLTVEENLLTGLAALPRR---SRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALV  147 (230)
T ss_pred             HhCeEE-eccCCccc--CCCcHHHHHHHHHHhcCcc---hHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence            112343 55554322  2357888776543332211   1222344555543 2  356778899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|++||+||||++||+.+++.+.++|.+
T Consensus       148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~  176 (230)
T TIGR03410       148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRR  176 (230)
T ss_pred             cCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998854

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.98  E-value=9.2e-32  Score=236.77  Aligned_cols=171  Identities=11%  Similarity=0.065  Sum_probs=132.6

Q ss_pred             eEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      .++++||++.|++... ...+|+|+||+|++|++++|+|+||||||||+++|+|++.   |+.|+ .++|...       
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~---p~~G~i~~~g~~i~~~~~~~   78 (286)
T PRK13646          2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLK---PTTGTVTVDDITITHKTKDK   78 (286)
T ss_pred             EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            3889999999974211 1126799999999999999999999999999999999998   99999 6676422       


Q ss_pred             -----CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHh
Q 025366          148 -----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVE  218 (254)
Q Consensus       148 -----~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~  218 (254)
                           ....|+ +.++.. .++.  .++.+++.+.....++........+.++++.+++.   .+..+..||+||+||++
T Consensus        79 ~~~~~~~~ig~-v~q~~~~~l~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~  155 (286)
T PRK13646         79 YIRPVRKRIGM-VFQFPESQLFE--DTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIA  155 (286)
T ss_pred             hHHHHHhheEE-EecChHhccch--hhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHH
Confidence                 113454 555531 2222  37788887654444443323345567888888885   24678899999999999


Q ss_pred             hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|++|+.+|++||+||||++||+..+..+.+++.+
T Consensus       156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~  190 (286)
T PRK13646        156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKS  190 (286)
T ss_pred             HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998863

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.6e-31  Score=231.76  Aligned_cols=171  Identities=12%  Similarity=0.102  Sum_probs=128.4

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCce-ecCCCCC-----
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~--~~p~~G~-~~~~~~~-----  147 (254)
                      ++++++|+++.|++..    +|+++||++++|++++|+||||||||||+++|+|+++.  .+|++|+ .++|...     
T Consensus         3 ~~l~i~~v~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~   78 (258)
T PRK14241          3 KRIDVKDLNIYYGSFH----AVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV   78 (258)
T ss_pred             ccEEEeeEEEEECCEe----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc
Confidence            4689999999998633    67999999999999999999999999999999999851  0126999 5666321     


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (254)
                           ....++ +.++...+.  .+++.+++.+.....+. ........+.++++.+++.      .+..+..||+||+|
T Consensus        79 ~~~~~~~~i~~-~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  155 (258)
T PRK14241         79 DPVAVRRTIGM-VFQRPNPFP--TMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQ  155 (258)
T ss_pred             ChHHHhcceEE-EccccccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHH
Confidence                 122444 454433222  26888887664433332 1112223456677777652      35677899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus       156 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  193 (258)
T PRK14241        156 RLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINE  193 (258)
T ss_pred             HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2e-31  Score=230.46  Aligned_cols=171  Identities=16%  Similarity=0.145  Sum_probs=129.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~----  147 (254)
                      .|+|+++||++.|++.  .  +++++||++++|++++|+||||||||||+++|+|++...  .|++|+ .++|...    
T Consensus         4 ~~~l~~~~l~~~~~~~--~--il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   79 (253)
T PRK14242          4 PPKMEARGLSFFYGDF--Q--ALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH   79 (253)
T ss_pred             CcEEEEeeeEEEECCe--e--eecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence            3689999999999863  2  669999999999999999999999999999999986311  147899 5666322    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (254)
                            ....++ +.++.. ++.  .++.+++.+.....+.. .......+.++++.+++.      .+..+..||+||+
T Consensus        80 ~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~  155 (253)
T PRK14242         80 VDVVELRRRVGM-VFQKPN-PFP--KSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQ  155 (253)
T ss_pred             cCHHHHhhcEEE-EecCCC-CCc--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHH
Confidence                  122444 555543 222  37888876654333331 112234566777777763      2566789999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus       156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  194 (253)
T PRK14242        156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHE  194 (253)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.3e-31  Score=230.16  Aligned_cols=164  Identities=14%  Similarity=0.092  Sum_probs=127.6

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |.+++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   73 (241)
T PRK14250          1 MNEIEFKEVSYSSFGKE----ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLID---PTEGSILIDGVDIKTIDVI   73 (241)
T ss_pred             CceEEEEeEEEEeCCee----eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEhhhcChH
Confidence            45689999999997632    5699999999999999999999999999999999997   99999 5666321      


Q ss_pred             --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhh
Q 025366          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~a  222 (254)
                        ....++ +.++... +.  .++.+++.+.....    ......+.++++.+++.   .+..+..||+||+||+++|+|
T Consensus        74 ~~~~~i~~-~~q~~~~-~~--~tv~e~l~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~a  145 (241)
T PRK14250         74 DLRRKIGM-VFQQPHL-FE--GTVKDNIEYGPMLK----GEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIART  145 (241)
T ss_pred             HhhhcEEE-EecCchh-ch--hhHHHHHhcchhhc----CcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence              122343 5555432 22  36666654322111    12234567788888875   356788999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|++||+||||++||+..++.+.++|.+
T Consensus       146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~  176 (241)
T PRK14250        146 LANNPEVLLLDEPTSALDPTSTEIIEELIVK  176 (241)
T ss_pred             HhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999988753

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.8e-31  Score=230.86  Aligned_cols=168  Identities=14%  Similarity=0.143  Sum_probs=129.1

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCC-
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (254)
                      .++++++++++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+++   |     ++|+ .++|... 
T Consensus         5 ~~~l~~~~l~~~~~~~--~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~i~~~g~~i~   77 (254)
T PRK14273          5 EAIIETENLNLFYTDF--K--ALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMND---LVEGIKIEGNVIYEGKNIY   77 (254)
T ss_pred             CceEEEeeeEEEeCCc--e--eecceeeEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCcCCCCceEEEECCEecc
Confidence            4579999999999863  3  5699999999999999999999999999999999996   5     4898 5666321 


Q ss_pred             ---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCCh
Q 025366          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDH  211 (254)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~  211 (254)
                               ....++ +.++...+ .  .++.+++.+.....+... ......+.++++.+++.      .+..+..||+
T Consensus        78 ~~~~~~~~~~~~i~~-v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSg  153 (254)
T PRK14273         78 SNNFDILELRRKIGM-VFQTPNPF-L--MSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSG  153 (254)
T ss_pred             cccccHHHHhhceEE-Eeeccccc-c--CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCH
Confidence                     122444 55554332 2  688888876543333211 11234456667766652      4667889999


Q ss_pred             hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+||+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus       154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  195 (254)
T PRK14273        154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIIN  195 (254)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998864

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=2.6e-31  Score=222.16  Aligned_cols=162  Identities=15%  Similarity=0.087  Sum_probs=127.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      |++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 ml~~~~l~~~~~~~~----il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~v~~~g~~~~~~~~~~~   73 (200)
T PRK13540          1 MLDVIELDFDYHDQP----LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN---PEKGEILFERQSIKKDLCTYQ   73 (200)
T ss_pred             CEEEEEEEEEeCCee----EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeeEEECCCccccCHHHHH
Confidence            478999999998633    5699999999999999999999999999999999997   99999 66764321       


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                      ...++ +.++....  +..++.+++.+....   .  .....+.++++.+++.  .+..+..||+||+||+++|++++.+
T Consensus        74 ~~i~~-~~q~~~~~--~~~tv~~~~~~~~~~---~--~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~  145 (200)
T PRK13540         74 KQLCF-VGHRSGIN--PYLTLRENCLYDIHF---S--PGAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSK  145 (200)
T ss_pred             hheEE-eccccccC--cCCCHHHHHHHHHhc---C--cchHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcC
Confidence            23343 44443222  226788877653211   1  1224567788877765  3566779999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++||+||||++||+.+++.+.++|.+
T Consensus       146 p~~lilDEP~~~LD~~~~~~l~~~l~~  172 (200)
T PRK13540        146 AKLWLLDEPLVALDELSLLTIITKIQE  172 (200)
T ss_pred             CCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence            999999999999999999999998864

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=99.97  E-value=1.5e-31  Score=223.86  Aligned_cols=160  Identities=17%  Similarity=0.109  Sum_probs=125.3

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PP  149 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~  149 (254)
                      ++++||++.|++..    +++++||+|++|+++||+|+||||||||+++|+|+++   |++|+ .++|...       ..
T Consensus         1 l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (201)
T cd03231           1 LEADELTCERDGRA----LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSP---PLAGRVLLNGGPLDFQRDSIAR   73 (201)
T ss_pred             CEEEEEEEEeCCce----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEecccccHHhhh
Confidence            46899999998733    5699999999999999999999999999999999997   99999 5665332       12


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                      ..++ +.++.. ++ ..+++.+++.+...      ......+.++++.+++.  .+.++..||+||+||+++|++++.+|
T Consensus        74 ~i~~-~~q~~~-~~-~~~tv~e~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p  144 (201)
T cd03231          74 GLLY-LGHAPG-IK-TTLSVLENLRFWHA------DHSDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGR  144 (201)
T ss_pred             heEE-eccccc-cC-CCcCHHHHHHhhcc------cccHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCC
Confidence            2343 443322 21 12577777654321      11345667788888775  45677899999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++||+||||++||+..++.+.++|.+
T Consensus       145 ~llllDEPt~~LD~~~~~~l~~~l~~  170 (201)
T cd03231         145 PLWILDEPTTALDKAGVARFAEAMAG  170 (201)
T ss_pred             CEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999998853

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.7e-31  Score=233.38  Aligned_cols=170  Identities=13%  Similarity=0.159  Sum_probs=131.2

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ++++++|+++.|++..+.  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus         6 ~~l~~~nl~~~~~~~~~~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   80 (271)
T PRK13632          6 VMIKVENVSFSYPNSENN--ALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLK---PQSGEIKIDGITISKENLKE   80 (271)
T ss_pred             eEEEEEeEEEEcCCCCcc--ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEecCcCCHHH
Confidence            579999999999632122  5699999999999999999999999999999999997   99999 5666322       


Q ss_pred             -CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       148 -~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                       ....++ +.++.. .+.  ..++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+||
T Consensus        81 ~~~~i~~-v~q~~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral  157 (271)
T PRK13632         81 IRKKIGI-IFQNPDNQFI--GATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVL  157 (271)
T ss_pred             HhcceEE-EEeCHHHhcC--cccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence             122344 555532 222  258888876643333322222233467788888775  4677889999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++|||||||++||+..++.+.+++.+
T Consensus       158 ~~~p~lllLDEP~~gLD~~~~~~l~~~l~~  187 (271)
T PRK13632        158 ALNPEIIIFDESTSMLDPKGKREIKKIMVD  187 (271)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998864

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=99.97  E-value=1e-31  Score=242.87  Aligned_cols=158  Identities=14%  Similarity=0.127  Sum_probs=128.1

Q ss_pred             eecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------------CCCe
Q 025366           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------------PPDV  151 (254)
Q Consensus        85 ~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------------~~~~  151 (254)
                      |.|++..    +++|+||+|++||+++|+||||||||||+++|+|+++   |++|+ .++|...            ....
T Consensus         1 ~~~~~~~----~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~---p~~G~I~i~G~~i~~~~~~~~~~~rr~~i   73 (363)
T TIGR01186         1 KKTGGKK----GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIE---PTAGQIFIDGENIMKQSPVELREVRRKKI   73 (363)
T ss_pred             CccCCce----eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCC---CCceEEEECCEECCcCCHHHHHHHHhCcE
Confidence            4566633    6799999999999999999999999999999999998   99999 6777422            1245


Q ss_pred             EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcE
Q 025366          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (254)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~v  229 (254)
                      ++ +.++...++  .+++.+|+.+.....+.........+.++++.+++.  .+.++.+|||||+||+++||||+.+|+|
T Consensus        74 ~~-v~Q~~~l~~--~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~i  150 (363)
T TIGR01186        74 GM-VFQQFALFP--HMTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDI  150 (363)
T ss_pred             EE-EECCCcCCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            55 555433332  268999998876655554333456678888888886  4678889999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHhh
Q 025366          230 VIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       230 lIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |||||||++||+..++.+.+++.
T Consensus       151 LLlDEP~saLD~~~r~~l~~~l~  173 (363)
T TIGR01186       151 LLMDEAFSALDPLIRDSMQDELK  173 (363)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHH
Confidence            99999999999999999999875

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=99.97  E-value=2.4e-31  Score=229.95  Aligned_cols=170  Identities=14%  Similarity=0.155  Sum_probs=126.9

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC-----CC-
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-----KP-  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~-----~~-  148 (254)
                      ++++++||++.|++..    +++|+||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|..     .. 
T Consensus         2 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   74 (253)
T TIGR02323         2 PLLQVSGLSKSYGGGK----GCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA---PDHGTATYIMRSGAELELYQ   74 (253)
T ss_pred             ceEEEeeeEEEeCCce----EeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEEeccccccccccc
Confidence            4699999999998633    5699999999999999999999999999999999998   99999 566532     10 


Q ss_pred             -----------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC---CCCCCCCCChhh
Q 025366          149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV  213 (254)
Q Consensus       149 -----------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~  213 (254)
                                 ...++ +.++........+++.+++.+....... ........+.++++.+++.   .+..+..||+||
T Consensus        75 ~~~~~~~~~~~~~i~~-~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~  153 (253)
T TIGR02323        75 LSEAERRRLMRTEWGF-VHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGM  153 (253)
T ss_pred             CCHHHHHHhhhcceEE-EEeCcccccCccccHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHH
Confidence                       12343 5555422112223455555432211221 1112234567788888874   356778999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|+||+.+|++||+||||++||+.+++.+.+++.+
T Consensus       154 ~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~  193 (253)
T TIGR02323       154 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG  193 (253)
T ss_pred             HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988753

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.6e-31  Score=237.18  Aligned_cols=172  Identities=15%  Similarity=0.089  Sum_probs=132.4

Q ss_pred             cceEEEecceeeccccc-ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~-~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (254)
                      -++|+++||++.|+... ....+|+|+||+|++|++++|+|+||||||||+++|+|+++   |++|+ .++|...     
T Consensus        19 ~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~---p~~G~I~i~g~~~~~~~~   95 (320)
T PRK13631         19 DIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK---SKYGTIQVGDIYIGDKKN   95 (320)
T ss_pred             CceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCEEcccccc
Confidence            36899999999997521 11226799999999999999999999999999999999998   99999 5665211     


Q ss_pred             -------------------CCCeEEEeeCCC-CCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCC
Q 025366          148 -------------------PPDVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSV  204 (254)
Q Consensus       148 -------------------~~~~g~~i~~~~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~  204 (254)
                                         ....+. +.++. ..++.  .++.+++.+.....+.........+.++++.+++.   .+.
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~ig~-v~Q~~~~~l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~  172 (320)
T PRK13631         96 NHELITNPYSKKIKNFKELRRRVSM-VFQFPEYQLFK--DTIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLER  172 (320)
T ss_pred             cccccccccccccchHHHHHhcEEE-EEECchhcccc--chHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcC
Confidence                               122454 55553 22332  37788876644333332222334567788888885   466


Q ss_pred             CCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       205 ~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      .+..||+||+||++||+||+.+|++|||||||++||+.++..+.++|.
T Consensus       173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~  220 (320)
T PRK13631        173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLIL  220 (320)
T ss_pred             CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHH
Confidence            788999999999999999999999999999999999999999999885

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.5e-31  Score=229.45  Aligned_cols=171  Identities=15%  Similarity=0.176  Sum_probs=128.3

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~----  147 (254)
                      |++|+++|+++.|++..    +++++||++++|++++|+|+||||||||+++|+|+++..  .|++|+ .++|...    
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~   76 (250)
T PRK14262          1 EPIIEIENFSAYYGEKK----AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQ   76 (250)
T ss_pred             CceEEEEeeEEEeCCce----eEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccch
Confidence            45799999999998633    669999999999999999999999999999999998510  027899 5666321    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (254)
                            ....++ +.++... +.  .++.+++.+.....+.. .......+.+.++.+++.      .+..+..||+||+
T Consensus        77 ~~~~~~~~~i~~-~~q~~~~-~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~  152 (250)
T PRK14262         77 LDVTEYRKKVGM-VFQKPTP-FP--MSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQ  152 (250)
T ss_pred             hhHHHhhhhEEE-EecCCcc-Cc--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHH
Confidence                  122443 5554432 22  57788876544333321 111223456667776663      3567789999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|+|++.+|++||+||||++||+.++..+.++|.+
T Consensus       153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~  191 (250)
T PRK14262        153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEE  191 (250)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=1.7e-31  Score=231.32  Aligned_cols=167  Identities=17%  Similarity=0.198  Sum_probs=128.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      +++++|+++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...        
T Consensus         2 ~l~~~~l~~~~~~~--~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (255)
T PRK11231          2 TLRTENLTVGYGTK--R--ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLT---PQSGTVFLGDKPISMLSSRQL   74 (255)
T ss_pred             EEEEEeEEEEECCE--E--EEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCCcEEEECCEEhHHCCHHHH
Confidence            58999999999863  3  5699999999999999999999999999999999997   99999 5666321        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH----HcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~----~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                      ....++ +.++....  ..+++.+++.+...    .++.........+..+++.+++.  .+..+..||+||+||+++|+
T Consensus        75 ~~~i~~-~~q~~~~~--~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lar  151 (255)
T PRK11231         75 ARRLAL-LPQHHLTP--EGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAM  151 (255)
T ss_pred             hhheEE-ecccCCCC--CCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHH
Confidence            112444 55554322  22577777654311    11111122234566777777775  46778899999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++.+|++||+||||++||+.+++.+.+++.+
T Consensus       152 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~  183 (255)
T PRK11231        152 VLAQDTPVVLLDEPTTYLDINHQVELMRLMRE  183 (255)
T ss_pred             HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998853

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.3e-31  Score=231.07  Aligned_cols=171  Identities=15%  Similarity=0.113  Sum_probs=129.4

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~----  147 (254)
                      +++|+++||++.|++.  .  +++|+||+|++|++++|+|+||||||||+++|+|+++..  .|++|+ .++|...    
T Consensus        17 ~~~l~~~nl~~~~~~~--~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~   92 (267)
T PRK14235         17 EIKMRARDVSVFYGEK--Q--ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR   92 (267)
T ss_pred             CceEEEEeEEEEECCE--E--EEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence            4589999999999863  3  569999999999999999999999999999999998500  138999 6666322    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC--CCccHHHHHHHHHhhccC------CCCCCCCCChhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~--~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~  213 (254)
                            ....++ +.++.. ++.  .++.+++.+.....+..  .......+..+++.+++.      .+..+..||+||
T Consensus        93 ~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq  168 (267)
T PRK14235         93 LDVVELRARVGM-VFQKPN-PFP--KSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQ  168 (267)
T ss_pred             cchHHHhhceEE-EecCCC-CCC--CcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHH
Confidence                  122344 455433 222  37788876544333321  111234456778877774      245678999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|++|+.+|++|||||||++||+..++.+.++|.+
T Consensus       169 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  208 (267)
T PRK14235        169 QQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDE  208 (267)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=99.97  E-value=2.7e-31  Score=231.70  Aligned_cols=173  Identities=17%  Similarity=0.135  Sum_probs=129.7

Q ss_pred             cceEEEecceeecccc-------cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC
Q 025366           75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV  146 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~-------~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~  146 (254)
                      |++|+++||++.|++.       .+.  +++|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|..
T Consensus         1 ~~~l~~~nl~~~~~~~~~~~~~~~~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~sG~i~~~g~~   75 (268)
T PRK10419          1 MTLLNVSGLSHHYAHGGLSGKHQHQT--VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLES---PSQGNVSWRGEP   75 (268)
T ss_pred             CceEEEeceEEEecCCccccccCcee--eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEe
Confidence            5689999999999731       122  5699999999999999999999999999999999997   99999 666642


Q ss_pred             C-----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCCCCCccHHHHHHHHHhhccC---CCCCCCCCCh
Q 025366          147 K-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH  211 (254)
Q Consensus       147 ~-----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~  211 (254)
                      .           ....++ +.++.........++.+++.+.... .+.........+.++++.+++.   .+..+..||+
T Consensus        76 ~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~  154 (268)
T PRK10419         76 LAKLNRAQRKAFRRDIQM-VFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSG  154 (268)
T ss_pred             ccccChhHHHHHHhcEEE-EEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCCh
Confidence            2           123444 5555421111225666665432221 1221222234567888888875   3567889999


Q ss_pred             hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+||+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus       155 Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  196 (268)
T PRK10419        155 GQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKK  196 (268)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999988853

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=99.97  E-value=1.7e-31  Score=230.85  Aligned_cols=166  Identities=15%  Similarity=0.132  Sum_probs=127.1

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (254)
                      |+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...         
T Consensus         1 i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~~   73 (252)
T TIGR03005         1 VRFSDVTKRFGILT----VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEP---IDEGQIQVEGEQLYHMPGRNGP   73 (252)
T ss_pred             CEEEEEEEEeCCee----EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEcccccccccc
Confidence            46899999998633    6699999999999999999999999999999999997   99999 5666322         


Q ss_pred             ------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChh
Q 025366          148 ------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHG  212 (254)
Q Consensus       148 ------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G  212 (254)
                                  ....++ +.++...+.  ..++.+++.+... ..+.........+.++++.+++.  .+..+..||+|
T Consensus        74 ~~~~~~~~~~~~~~~i~~-v~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G  150 (252)
T TIGR03005        74 LVPADEKHLRQMRNKIGM-VFQSFNLFP--HKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGG  150 (252)
T ss_pred             ccccchhHHHHHhhCeEE-EecCcccCC--CCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHH
Confidence                        112343 455433222  2578887765322 12222222234567778887775  35667899999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus       151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  191 (252)
T TIGR03005       151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRR  191 (252)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988853

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=99.97  E-value=1.8e-31  Score=224.75  Aligned_cols=164  Identities=14%  Similarity=0.106  Sum_probs=125.6

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (254)
                      ++++|+++.|++..      .++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      ...
T Consensus         1 i~~~~l~~~~~~~~------~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~---~~~G~i~~~g~~~~~~~~~~~~   71 (211)
T cd03298           1 VRLDKIRFSYGEQP------MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFET---PQSGRVLINGVDVTAAPPADRP   71 (211)
T ss_pred             CEEEeEEEEeCCEe------cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEEcCcCCHhHcc
Confidence            46889999997621      39999999999999999999999999999999997   99999 6666322      112


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      .++ +.++...+.  .+++.+++.+...............+.++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        72 i~~-~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~  148 (211)
T cd03298          72 VSM-LFQENNLFA--HLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKP  148 (211)
T ss_pred             EEE-EecccccCC--CCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            454 555544322  257777775432211011112334567788888775  456778999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+||||++||+..++.+.+++.+
T Consensus       149 llllDEP~~~LD~~~~~~l~~~l~~  173 (211)
T cd03298         149 VLLLDEPFAALDPALRAEMLDLVLD  173 (211)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998853

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.4e-31  Score=233.30  Aligned_cols=170  Identities=15%  Similarity=0.092  Sum_probs=129.3

Q ss_pred             EEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      ++++||++.|++... ...+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~~   79 (280)
T PRK13649          3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHV---PTQGSVRVDDTLITSTSKNKD   79 (280)
T ss_pred             EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccC
Confidence            789999999975210 0126799999999999999999999999999999999997   99999 56663211       


Q ss_pred             -----CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhh
Q 025366          149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       149 -----~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~i  219 (254)
                           ...++ +.++.. .++.  .++.+++.+.....+.........+.++++.+++.   .+..+..||+||+||+++
T Consensus        80 ~~~~~~~i~~-~~q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~l  156 (280)
T PRK13649         80 IKQIRKKVGL-VFQFPESQLFE--ETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAI  156 (280)
T ss_pred             HHHHHhheEE-EeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHH
Confidence                 12344 555531 2222  47888876544333332212233456777887775   366788999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+|++.+|++|||||||++||+..++.+.++|.+
T Consensus       157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  190 (280)
T PRK13649        157 AGILAMEPKILVLDEPTAGLDPKGRKELMTLFKK  190 (280)
T ss_pred             HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998753

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.9e-31  Score=228.42  Aligned_cols=168  Identities=14%  Similarity=0.086  Sum_probs=129.4

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCC-
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (254)
                      -++++++|+++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+.+   |     ++|+ .++|... 
T Consensus         2 ~~~l~~~~l~~~~~~~--~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~~~~~~G~i~~~g~~i~   74 (251)
T PRK14270          2 KIKMESKNLNLWYGEK--Q--ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMND---LISNVKIEGEVLLDGKNIY   74 (251)
T ss_pred             ccEEEEEEeEEEECCe--e--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---cccCCCCccEEEECCEecc
Confidence            3689999999999863  2  6699999999999999999999999999999999985   4     7899 6666432 


Q ss_pred             ---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCCh
Q 025366          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDH  211 (254)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~  211 (254)
                               ....++ +.++...+ .  .++.+++.+.....+.. .......+.++++.+++.      .+..+..||+
T Consensus        75 ~~~~~~~~~~~~i~~-~~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~  150 (251)
T PRK14270         75 DKDVDVVELRKRVGM-VFQKPNPF-P--MSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSG  150 (251)
T ss_pred             cccccHHHHHhheEE-EecCCCcC-C--CcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCH
Confidence                     112444 55554332 2  57888887654333331 112223456677777653      3567789999


Q ss_pred             hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+||+++|++++.+|+|||+||||++||+.++..+.+++.+
T Consensus       151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~  192 (251)
T PRK14270        151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVE  192 (251)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998864

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=99.97  E-value=3.6e-31  Score=223.35  Aligned_cols=164  Identities=16%  Similarity=0.144  Sum_probs=125.9

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (254)
                      ++++||++.|+.      .+.++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      ...
T Consensus         1 ~~~~~l~~~~~~------~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   71 (213)
T TIGR01277         1 LALDKVRYEYEH------LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE---PASGSIKVNDQSHTGLAPYQRP   71 (213)
T ss_pred             CeEEeeeEEeCC------cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccCChhccc
Confidence            368999999974      3479999999999999999999999999999999997   99999 6666422      122


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      .++ +.++...+.  .+++.+++.+...............+.++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        72 i~~-v~q~~~~~~--~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~  148 (213)
T TIGR01277        72 VSM-LFQENNLFA--HLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNP  148 (213)
T ss_pred             eEE-EeccCccCC--CCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence            443 555533222  257888876532211111112234567788888775  356778999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|+||||++||+.+++.+.++|.+
T Consensus       149 llllDEPt~~LD~~~~~~~~~~l~~  173 (213)
T TIGR01277       149 ILLLDEPFSALDPLLREEMLALVKQ  173 (213)
T ss_pred             EEEEcCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998864

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.5e-31  Score=232.72  Aligned_cols=168  Identities=16%  Similarity=0.147  Sum_probs=130.6

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      +++++||++.|++. ..  +++++||++++||+++|+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus         1 ~l~~~~l~~~~~~~-~~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~~~   74 (275)
T PRK13639          1 ILETRDLKYSYPDG-TE--ALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILK---PTSGEVLIKGEPIKYDKKSLL   74 (275)
T ss_pred             CEEEEEEEEEeCCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCccEEEECCEECccccchHH
Confidence            47899999999742 22  5699999999999999999999999999999999997   99999 6666432        


Q ss_pred             --CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          148 --PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       148 --~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                        ....++ +.++.. .++.  .++.+++.+.....+.........+.++++.+++.  .+.++.+||+||+||+++|++
T Consensus        75 ~~~~~i~~-v~q~~~~~~~~--~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~lara  151 (275)
T PRK13639         75 EVRKTVGI-VFQNPDDQLFA--PTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGI  151 (275)
T ss_pred             HHHhheEE-EeeChhhhhcc--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHH
Confidence              112344 566532 2222  47888876543333322222234567788888875  467788999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|++||+||||++||+.++..+.+++.+
T Consensus       152 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~  182 (275)
T PRK13639        152 LAMKPEIIVLDEPTSGLDPMGASQIMKLLYD  182 (275)
T ss_pred             HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998864

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.7e-31  Score=229.57  Aligned_cols=171  Identities=14%  Similarity=0.082  Sum_probs=129.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~----  147 (254)
                      .++++++||++.|++..    +++++||++++|++++|+|+||||||||+++|+|+++..  .|++|+ .++|...    
T Consensus        18 ~~~l~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~   93 (267)
T PRK14237         18 EIALSTKDLHVYYGKKE----AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE   93 (267)
T ss_pred             CeEEEEeeEEEEECCee----eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence            45799999999997633    669999999999999999999999999999999998410  147999 5666322    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (254)
                            ....++ +.++...+ .  .++.+++.+.....+.. .......+.++++.+++.      .+..+..||+||+
T Consensus        94 ~~~~~~~~~i~~-v~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~  169 (267)
T PRK14237         94 INVYEMRKHIGM-VFQRPNPF-A--KSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQ  169 (267)
T ss_pred             CChHHHhcceEE-EecCCccc-c--ccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHH
Confidence                  112344 55554332 2  47888887644333331 112234456677777663      3567789999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|++++.+|++|||||||++||+..+..+.+++.+
T Consensus       170 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  208 (267)
T PRK14237        170 QRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFE  208 (267)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=99.97  E-value=6.3e-31  Score=227.63  Aligned_cols=166  Identities=14%  Similarity=0.150  Sum_probs=126.9

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC----CCce-ecCCCCC----
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQVK----  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p----~~G~-~~~~~~~----  147 (254)
                      +++++||++.| +.  .  +++++||++++|++++|+|+||||||||+++|+|+++   |    ++|+ .++|...    
T Consensus         4 ~l~~~~l~~~~-~~--~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~~~G~i~~~g~~i~~~~   75 (254)
T PRK10418          4 QIELRNIALQA-AQ--P--LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILP---AGVRQTAGRVLLDGKPVAPCA   75 (254)
T ss_pred             EEEEeCeEEEe-cc--c--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCCcCCEEEECCeeccccc
Confidence            68999999999 32  2  5699999999999999999999999999999999997   7    8999 5666432    


Q ss_pred             --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC-----CCCCCCCChhhhhhHhhh
Q 025366          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~G~~qrv~ia  220 (254)
                        ....++ +.++....+.+..++.++..+.....+..  .....+.++++.+++..     +..+..||+||+||+++|
T Consensus        76 ~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~la  152 (254)
T PRK10418         76 LRGRKIAT-IMQNPRSAFNPLHTMHTHARETCLALGKP--ADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIA  152 (254)
T ss_pred             cccceEEE-EecCCccccCccccHHHHHHHHHHHcCCC--hHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHH
Confidence              122443 55554211222245555544332233322  22356778888888764     567889999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|++.+|++|||||||++||+.+++.+.+++.+
T Consensus       153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~  185 (254)
T PRK10418        153 LALLCEAPFIIADEPTTDLDVVAQARILDLLES  185 (254)
T ss_pred             HHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999988753

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.4e-31  Score=231.59  Aligned_cols=168  Identities=18%  Similarity=0.117  Sum_probs=128.6

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ++++++||++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...       
T Consensus        10 ~~l~i~~l~~~~~~~--~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   82 (265)
T PRK10575         10 TTFALRNVSFRVPGR--T--LLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP---PSEGEILLDAQPLESWSSKA   82 (265)
T ss_pred             ceEEEeeEEEEECCE--E--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEehhhCCHHH
Confidence            579999999999763  2  6699999999999999999999999999999999997   99999 5666321       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cC---CCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RG---APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g---~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia  220 (254)
                       ....++ +.++...++  .+++.+++.+.... .+   .........+.++++.+++.  .+.++..||+||+||+++|
T Consensus        83 ~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la  159 (265)
T PRK10575         83 FARKVAY-LPQQLPAAE--GMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIA  159 (265)
T ss_pred             HhhheEE-eccCCCCCC--CccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHH
Confidence             123444 454432222  25777776542211 11   11112234567788887775  4667889999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++++.+|+||||||||++||+.+++.+.++|.+
T Consensus       160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  192 (265)
T PRK10575        160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR  192 (265)
T ss_pred             HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998854

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=99.97  E-value=3.1e-31  Score=240.88  Aligned_cols=162  Identities=14%  Similarity=0.079  Sum_probs=128.0

Q ss_pred             cceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCC-----CC--------
Q 025366           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-----VK--------  147 (254)
Q Consensus        82 ~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~-----~~--------  147 (254)
                      ++.+.|+..    .+++|+||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|+     ..        
T Consensus        29 ~~~~~~g~~----~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~---p~~G~I~idG~~~~~~i~~~~~~~l~  101 (382)
T TIGR03415        29 EILDETGLV----VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNP---VSRGSVLVKDGDGSIDVANCDAATLR  101 (382)
T ss_pred             HHHHhhCCE----EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEecccccccCCHHHHH
Confidence            344555543    37799999999999999999999999999999999998   99999 67763     11        


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         ....+. +.++...++  .+++.+|+.+.....+...........++++.+++.  .+.++.+||+||+||+++|+|
T Consensus       102 ~~r~~~i~~-vfQ~~~l~p--~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARA  178 (382)
T TIGR03415       102 RLRTHRVSM-VFQKFALMP--WLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARA  178 (382)
T ss_pred             HHhcCCEEE-EECCCcCCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHH
Confidence               023454 555543332  268899988765555544333445678889988886  467888999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+.+|+|||+||||++||+..+.++.++|.+
T Consensus       179 La~~P~ILLlDEPts~LD~~~r~~l~~~L~~  209 (382)
T TIGR03415       179 FAMDADILLMDEPFSALDPLIRTQLQDELLE  209 (382)
T ss_pred             HhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998753

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.4e-31  Score=229.36  Aligned_cols=171  Identities=12%  Similarity=0.074  Sum_probs=129.2

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~----  147 (254)
                      ..+++++|+++.|++.  .  +++++||++++|++++|+||||||||||+++|+|++.  ...|++|+ .++|...    
T Consensus        11 ~~~l~~~~l~~~~~~~--~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~   86 (260)
T PRK10744         11 PSKIQVRNLNFYYGKF--H--ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK   86 (260)
T ss_pred             CceEEEEEEEEEeCCe--E--EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc
Confidence            4679999999999863  2  5699999999999999999999999999999999984  11147899 5666321    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (254)
                            ....++ +.++.. ++.  .++.+++.+..... +.........+.++++.+++.      .+..+..||+||+
T Consensus        87 ~~~~~~~~~i~~-~~q~~~-~~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~  162 (260)
T PRK10744         87 QDIALLRAKVGM-VFQKPT-PFP--MSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQ  162 (260)
T ss_pred             cchHHHhcceEE-EecCCc-cCc--CcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHH
Confidence                  122444 555433 222  57778776543322 222222234566778877763      3567789999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|+|++.+|++||+||||++||+.+++.+.+++.+
T Consensus       163 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  201 (260)
T PRK10744        163 QRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITE  201 (260)
T ss_pred             HHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.3e-31  Score=229.29  Aligned_cols=168  Identities=17%  Similarity=0.140  Sum_probs=127.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....      
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   76 (255)
T PRK11300          4 PLLSVSGLMMRFGGLL----AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYK---PTGGTILLRGQHIEGLPGHQ   76 (255)
T ss_pred             ceEEEeeEEEEECCEE----EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcC---CCcceEEECCEECCCCCHHH
Confidence            3699999999998632    6699999999999999999999999999999999997   99999 66664221      


Q ss_pred             ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-------CCCC------C--ccHHHHHHHHHhhccC--CCCCCCC
Q 025366          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-------GAPW------T--FNPLLLLNCLKNLRNQ--GSVYAPS  208 (254)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-------g~~~------~--~~~~~~~~~l~~l~l~--~~~~~~~  208 (254)
                         ...++ +.++...+  +.+++.+++.+.....       +...      .  .....+.++++.+++.  .+.++..
T Consensus        77 ~~~~~i~~-~~q~~~~~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~  153 (255)
T PRK11300         77 IARMGVVR-TFQHVRLF--REMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGN  153 (255)
T ss_pred             HHhcCeEE-eccCcccC--CCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhh
Confidence               11232 44443322  2368888876542210       1100      0  1123456677777775  4677889


Q ss_pred             CChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       209 lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+||+||+++|+|++.+|++||+||||++||+.+++.+.++|.+
T Consensus       154 LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~  198 (255)
T PRK11300        154 LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAE  198 (255)
T ss_pred             CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998853

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.2e-31  Score=230.60  Aligned_cols=171  Identities=13%  Similarity=0.131  Sum_probs=130.3

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (254)
                      .++++++|+++.|++..  ..+++|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....     
T Consensus         5 ~~~l~i~~l~~~~~~~~--~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~~~~~~~~   79 (269)
T PRK13648          5 NSIIVFKNVSFQYQSDA--SFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK---VKSGEIFYNNQAITDDNFE   79 (269)
T ss_pred             CceEEEEEEEEEcCCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCcCCHH
Confidence            35799999999997522  125699999999999999999999999999999999997   99999 66664321     


Q ss_pred             ---CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       149 ---~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         ...++ +.++.. .++.  .++.++..+.....+.........+..+++.+++.  .+..+..||+||+||+++|+|
T Consensus        80 ~~~~~i~~-v~q~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~lara  156 (269)
T PRK13648         80 KLRKHIGI-VFQNPDNQFVG--SIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGV  156 (269)
T ss_pred             HHHhheeE-EEeChHHhccc--ccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHH
Confidence               12444 555532 2221  45566665543333332222234566778888775  456788999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|++||+||||++||+..++.+.+++.+
T Consensus       157 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  187 (269)
T PRK13648        157 LALNPSVIILDEATSMLDPDARQNLLDLVRK  187 (269)
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998853

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.97  E-value=3.4e-31  Score=255.54  Aligned_cols=176  Identities=16%  Similarity=0.162  Sum_probs=136.0

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (254)
                      .+++|+++||++.|+.......+++|+||++++|+++||+|+||||||||+++|+|+++   |++|+ .++|...     
T Consensus         9 ~~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~---p~~G~i~~~g~~~~~~~~   85 (623)
T PRK10261          9 ARDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLE---QAGGLVQCDKMLLRRRSR   85 (623)
T ss_pred             CCceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCeEEEECCEEeccccc
Confidence            46789999999999642112236799999999999999999999999999999999997   89998 4444200     


Q ss_pred             -----------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC-----CCC
Q 025366          148 -----------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ-----GSV  204 (254)
Q Consensus       148 -----------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~-----~~~  204 (254)
                                       ...+|. +.++......+.+++.+++.+..... ++.......++.++++.+++.     .+.
T Consensus        86 ~~~~~~~~~~~~~~~~r~~~ig~-v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~  164 (623)
T PRK10261         86 QVIELSEQSAAQMRHVRGADMAM-IFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSR  164 (623)
T ss_pred             cccccccCCHHHHHHHhCCCEEE-EEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhC
Confidence                             123555 55553111122368889887755432 433222345677889999884     367


Q ss_pred             CCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       205 ~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|||||+|||+||+||+.+|+|||+||||++||+..++++.+++++
T Consensus       165 ~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~  213 (623)
T PRK10261        165 YPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKV  213 (623)
T ss_pred             CCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHH
Confidence            8899999999999999999999999999999999999999999998864

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.9e-31  Score=228.37  Aligned_cols=171  Identities=13%  Similarity=0.109  Sum_probs=128.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~----  147 (254)
                      .++++++|+++.|++..    +++++||+|++|++++|+|+||||||||+++|+|+++  ..++++|+ .++|...    
T Consensus        10 ~~~l~i~~l~~~~~~~~----~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~   85 (259)
T PRK14274         10 QEVYQINGMNLWYGQHH----ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK   85 (259)
T ss_pred             CceEEEeeEEEEECCee----eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence            46899999999998632    6699999999999999999999999999999999984  00126899 5666422    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (254)
                            ....++ +.++...+ .  .++.+++.+.....+... ......+.++++.+++.      .+..+..||+||+
T Consensus        86 ~~~~~~~~~i~~-v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~  161 (259)
T PRK14274         86 VDLVELRKNIGM-VFQKGNPF-P--QSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQ  161 (259)
T ss_pred             cCHHHHhhceEE-EecCCccc-c--cCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHH
Confidence                  122444 55554332 2  377888765443333211 11223456677777663      3567789999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus       162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  200 (259)
T PRK14274        162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILK  200 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=99.97  E-value=4.9e-31  Score=228.03  Aligned_cols=159  Identities=16%  Similarity=0.126  Sum_probs=122.0

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (254)
                      ++++++||++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++.   ...++ 
T Consensus         3 ~~l~~~~l~~~~~~~--~--vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~~~---~~i~~-   71 (251)
T PRK09544          3 SLVSLENVSVSFGQR--R--VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVA---PDEGVIKRNGK---LRIGY-   71 (251)
T ss_pred             cEEEEeceEEEECCc--e--EEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCc---cCEEE-
Confidence            579999999999863  3  5699999999999999999999999999999999997   99999 45542   23454 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEE
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIl  232 (254)
                      +.++......-..++.++..       +........+..+++.+++.  .+.++..||+||+||+++|++++.+|++||+
T Consensus        72 v~q~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllL  144 (251)
T PRK09544         72 VPQKLYLDTTLPLTVNRFLR-------LRPGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVL  144 (251)
T ss_pred             eccccccccccChhHHHHHh-------ccccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence            55543221110012222211       11112234567788888775  3567889999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHhh
Q 025366          233 DGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       233 DEp~~~lD~~~~~~l~~ll~  252 (254)
                      ||||++||+.+++.+.++|.
T Consensus       145 DEPt~~LD~~~~~~l~~~L~  164 (251)
T PRK09544        145 DEPTQGVDVNGQVALYDLID  164 (251)
T ss_pred             eCCCcCCCHHHHHHHHHHHH
Confidence            99999999999999998875

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.9e-31  Score=227.78  Aligned_cols=169  Identities=15%  Similarity=0.149  Sum_probs=127.9

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---CCce-ecCCCCC----
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK----  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p---~~G~-~~~~~~~----  147 (254)
                      ++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+.. ..|   ++|+ .++|...    
T Consensus         4 ~~l~~~~l~~~~~~~~----~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~-~~p~~~~~G~i~~~g~~~~~~~   78 (252)
T PRK14239          4 PILQVSDLSVYYNKKK----ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMND-LNPEVTITGSIVYNGHNIYSPR   78 (252)
T ss_pred             ceEEEEeeEEEECCee----eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccc-cCCCCCccceEEECCEECcCcc
Confidence            4799999999998632    5699999999999999999999999999999999842 015   4899 5666321    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (254)
                            ....++ +.++... +.  .++.+++.+.....+... ......+.++++.+++.      .+..+..||+||+
T Consensus        79 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~  154 (252)
T PRK14239         79 TDTVDLRKEIGM-VFQQPNP-FP--MSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQ  154 (252)
T ss_pred             cchHhhhhcEEE-EecCCcc-Cc--CcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHH
Confidence                  122444 5555432 22  578888876543333321 11234456677777653      3567789999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|+|++.+|++||+||||++||+.+++.+.++|.+
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  193 (252)
T PRK14239        155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLG  193 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=2.2e-31  Score=228.09  Aligned_cols=167  Identities=15%  Similarity=0.113  Sum_probs=125.2

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus         3 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~   75 (237)
T PRK11614          3 KVMLSFDKVSAHYGKIQ----ALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPR---ATSGRIVFDGKDITDWQTA   75 (237)
T ss_pred             ccEEEEEeEEEeeCCce----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCceEEECCEecCCCCHH
Confidence            46899999999998633    6699999999999999999999999999999999997   99999 6666422      


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhh-ccC--CCCCCCCCChhhhhhHhhhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-RNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l-~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                         ....++ +.++...+.  .+++.+++.......  ........+..+++.+ ++.  .+.++..||+||+||+++|+
T Consensus        76 ~~~~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~~--~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~  150 (237)
T PRK11614         76 KIMREAVAI-VPEGRRVFS--RMTVEENLAMGGFFA--ERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGR  150 (237)
T ss_pred             HHHHhCEEE-eccCcccCC--CCcHHHHHHHhhhcc--ChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHH
Confidence               112343 454433222  257777775532111  1111122344455554 232  35677899999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++.+|++||+||||++||+..++.+.+++.+
T Consensus       151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~  182 (237)
T PRK11614        151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQ  182 (237)
T ss_pred             HHHhCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998753

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=99.97  E-value=2.6e-31  Score=220.29  Aligned_cols=152  Identities=18%  Similarity=0.140  Sum_probs=117.7

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----------CCCeEEEeeCCCC-CCC
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----------PPDVATVLPMDGF-HLY  163 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----------~~~~g~~i~~~~~-~~~  163 (254)
                      +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...          ....++ +.++.. .++
T Consensus         7 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~~~~i~~-~~q~~~~~~~   82 (190)
T TIGR01166         7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLR---PQSGAVLIDGEPLDYSRKGLLERRQRVGL-VFQDPDDQLF   82 (190)
T ss_pred             eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEECCEEccccccchHHHHhhEEE-EecChhhccc
Confidence            6699999999999999999999999999999999997   99999 5666321          112344 555532 222


Q ss_pred             CcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          164 LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       164 ~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                      .  .++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+|++.+|++||+||||++||+
T Consensus        83 ~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~  160 (190)
T TIGR01166        83 A--ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDP  160 (190)
T ss_pred             c--ccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCH
Confidence            2  47888876643333332222234567778877775  4667889999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhc
Q 025366          242 GVWKDVSSMFDE  253 (254)
Q Consensus       242 ~~~~~l~~ll~~  253 (254)
                      ..++.+.++|.+
T Consensus       161 ~~~~~~~~~l~~  172 (190)
T TIGR01166       161 AGREQMLAILRR  172 (190)
T ss_pred             HHHHHHHHHHHH
Confidence            999999998864

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.1e-31  Score=232.92  Aligned_cols=172  Identities=12%  Similarity=0.036  Sum_probs=129.2

Q ss_pred             ceEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      ..|+++||++.|++... ...+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus         5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~   81 (289)
T PRK13645          5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLII---SETGQTIVGDYAIPANLKK   81 (289)
T ss_pred             ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEccccccc
Confidence            46899999999976321 1125699999999999999999999999999999999997   99999 5665321      


Q ss_pred             -------CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhh
Q 025366          148 -------PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDP  216 (254)
Q Consensus       148 -------~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qr  216 (254)
                             ....++ +.++.. .++.  .++.+++.+.....+.........+.++++.+++.   .+.++..||+||+||
T Consensus        82 ~~~~~~~~~~i~~-v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qr  158 (289)
T PRK13645         82 IKEVKRLRKEIGL-VFQFPEYQLFQ--ETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRR  158 (289)
T ss_pred             cccHHHHhccEEE-EEeCcchhhhh--hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHH
Confidence                   112344 555532 2222  47777776543333322111223456777877773   366788999999999


Q ss_pred             HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++|+|++.+|++|||||||++||+.+++.+.++|.+
T Consensus       159 v~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  195 (289)
T PRK13645        159 VALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFER  195 (289)
T ss_pred             HHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999988753

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=7.7e-31  Score=226.47  Aligned_cols=170  Identities=17%  Similarity=0.118  Sum_probs=127.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCce-ecCCCCCC----
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVKP----  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p--~~G~-~~~~~~~~----  148 (254)
                      ++++++|+++.|++..    +++++||++++|++++|+|+||||||||+++|+|+.....|  ++|+ .++|....    
T Consensus         2 ~~l~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   77 (250)
T PRK14245          2 VKIDARDVNFWYGDFH----ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV   77 (250)
T ss_pred             cEEEEEEEEEEECCEe----EEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc
Confidence            5799999999998732    56999999999999999999999999999999997310113  5899 66664321    


Q ss_pred             ------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (254)
Q Consensus       149 ------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (254)
                            ...++ +.++...+ .  .++.+++.+.....+... ......+.++++.+++.      .+..+..||+||+|
T Consensus        78 ~~~~~~~~i~~-v~q~~~~~-~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  153 (250)
T PRK14245         78 QVDELRKNVGM-VFQRPNPF-P--KSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQ  153 (250)
T ss_pred             cHHHHhhheEE-EecCCccC-c--ccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHH
Confidence                  12444 55554322 2  377888765443333221 12234566778877763      24567799999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|++++.+|++||+||||++||+.+++.+.+++.+
T Consensus       154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  191 (250)
T PRK14245        154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHE  191 (250)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=99.97  E-value=5.7e-31  Score=223.52  Aligned_cols=162  Identities=20%  Similarity=0.222  Sum_probs=127.4

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC----CCeE
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----PDVA  152 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----~~~g  152 (254)
                      ++++|+++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....    ...+
T Consensus         1 l~l~~v~~~~~~~--~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~~~~~~~~~~~~   73 (223)
T TIGR03740         1 LETKNLSKRFGKQ--T--AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILR---PTSGEIIFDGHPWTRKDLHKIG   73 (223)
T ss_pred             CEEEeEEEEECCE--E--EEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEeccccccccEE
Confidence            4689999999863  2  5699999999999999999999999999999999997   99999 56664221    1234


Q ss_pred             EEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (254)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vl  230 (254)
                      + +.++...+.  .+++.+++.+.....+.    ....+.++++.+++.  .+..+..||+||+||+++|++++.+|++|
T Consensus        74 ~-~~q~~~~~~--~~t~~~~~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~ll  146 (223)
T TIGR03740        74 S-LIESPPLYE--NLTARENLKVHTTLLGL----PDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLL  146 (223)
T ss_pred             E-EcCCCCccc--cCCHHHHHHHHHHHcCC----CHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEE
Confidence            3 444433222  25788887654433331    235667788888776  35667899999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHhhc
Q 025366          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       231 IlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||||++||+.+++.+.+++.+
T Consensus       147 llDEP~~~LD~~~~~~l~~~L~~  169 (223)
T TIGR03740       147 ILDEPTNGLDPIGIQELRELIRS  169 (223)
T ss_pred             EECCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999998854

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=99.97  E-value=3.1e-31  Score=227.22  Aligned_cols=153  Identities=16%  Similarity=0.117  Sum_probs=116.5

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------CCCeEEEeeCCCCCCCCcCC
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------PPDVATVLPMDGFHLYLSQL  167 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~~~~g~~i~~~~~~~~~~~l  167 (254)
                      +|+++||++++|++++|+|+||||||||+++|+|+++   |++|+ .+++...       ....++ +..+...++ ..+
T Consensus        36 il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~i~~-~~~~~~~~~-~~~  110 (236)
T cd03267          36 ALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQ---PTSGEVRVAGLVPWKRRKKFLRRIGV-VFGQKTQLW-WDL  110 (236)
T ss_pred             eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEccccchhhcccEEE-EcCCccccC-CCC
Confidence            6799999999999999999999999999999999997   99999 5665321       112343 332221222 226


Q ss_pred             ChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHH
Q 025366          168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK  245 (254)
Q Consensus       168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~  245 (254)
                      ++.+++.+.....+.........+..+++.+++.  .+.++..||+||+||+++|++++.+|++||+||||++||+..++
T Consensus       111 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~  190 (236)
T cd03267         111 PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE  190 (236)
T ss_pred             cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHH
Confidence            7878776654433432222234456677777765  36677899999999999999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 025366          246 DVSSMFDE  253 (254)
Q Consensus       246 ~l~~ll~~  253 (254)
                      .+.++|.+
T Consensus       191 ~l~~~l~~  198 (236)
T cd03267         191 NIRNFLKE  198 (236)
T ss_pred             HHHHHHHH
Confidence            99998864

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=7.2e-31  Score=226.47  Aligned_cols=168  Identities=14%  Similarity=0.139  Sum_probs=126.3

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCC-
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (254)
                      |++++++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |     ++|+ .++|... 
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~   73 (249)
T PRK14253          1 MNKFNIENLDLFYGENQ----ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMND---LIEGVKITGKLTMDGEDIY   73 (249)
T ss_pred             CCeEEEeccEEEECCee----eeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcc---cccCCCCceEEEECCEEcc
Confidence            46799999999998632    6699999999999999999999999999999999985   5     5898 5665321 


Q ss_pred             --------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChh
Q 025366          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (254)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G  212 (254)
                              ....++ +.++.. ++.  .++.+++.+.....+.. +......+.+.++.+++.      .+..+..||+|
T Consensus        74 ~~~~~~~~~~~i~~-~~q~~~-~~~--~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G  149 (249)
T PRK14253         74 GNIDVADLRIKVGM-VFQKPN-PFP--MSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGG  149 (249)
T ss_pred             cccchHHHHhheeE-EecCCC-cCc--ccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHH
Confidence                    112344 555433 222  47778776543333321 111223445566666542      34567899999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+++|++++.+|+|||+||||++||+.++..+.+++.+
T Consensus       150 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  190 (249)
T PRK14253        150 QQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEE  190 (249)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998864

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=4.6e-31  Score=225.46  Aligned_cols=164  Identities=16%  Similarity=0.186  Sum_probs=126.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------C
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------P  149 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------~  149 (254)
                      +++++||++.|++.      ..++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....      .
T Consensus         1 ~l~~~~l~~~~~~~------~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~   71 (232)
T PRK10771          1 MLKLTDITWLYHHL------PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLT---PASGSLTLNGQDHTTTPPSRR   71 (232)
T ss_pred             CeEEEEEEEEECCc------cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCeecCcCChhhc
Confidence            47899999999752      148999999999999999999999999999999997   99999 66664321      2


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                      ..++ +.++...+.  .+++.+++.+.... .. ........+.++++.+++.  .+..+..||+||+||+++|++++.+
T Consensus        72 ~i~~-~~q~~~~~~--~~tv~e~l~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~  147 (232)
T PRK10771         72 PVSM-LFQENNLFS--HLTVAQNIGLGLNP-GLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVRE  147 (232)
T ss_pred             cEEE-Eeccccccc--CCcHHHHHhccccc-ccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcC
Confidence            2444 455433222  25777776543211 11 1112334567788888775  4677889999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++||+||||++||+.+++.+.+++.+
T Consensus       148 p~lllLDEP~~gLD~~~~~~~~~~l~~  174 (232)
T PRK10771        148 QPILLLDEPFSALDPALRQEMLTLVSQ  174 (232)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999998853

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=99.97  E-value=4.6e-31  Score=229.40  Aligned_cols=168  Identities=15%  Similarity=0.128  Sum_probs=128.6

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Cce-ecCCCCCC---
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVKP---  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~---~G~-~~~~~~~~---  148 (254)
                      ++|+++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |+   +|+ .++|....   
T Consensus         3 ~~l~~~nl~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---p~~~~~G~i~~~g~~~~~~~   75 (262)
T PRK09984          3 TIIRVEKLAKTFNQHQ----ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT---GDKSAGSHIELLGRTVQREG   75 (262)
T ss_pred             cEEEEeeEEEEeCCeE----EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---CCCCCceEEEECCEeccccc
Confidence            5799999999998633    5699999999999999999999999999999999996   65   488 56664221   


Q ss_pred             ----------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH--------cCCCCCccHHHHHHHHHhhccC--CCCCCCC
Q 025366          149 ----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--------RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS  208 (254)
Q Consensus       149 ----------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~--------~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~  208 (254)
                                ...++ +.++...++  .+++.+++.+....        .+.........+.++++.+++.  .+..+..
T Consensus        76 ~~~~~~~~~~~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  152 (262)
T PRK09984         76 RLARDIRKSRANTGY-IFQQFNLVN--RLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVST  152 (262)
T ss_pred             ccchhHHHHHhheEE-Ecccccccc--CCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccc
Confidence                      12344 555433222  36788877543211        0111112234567788888875  4677889


Q ss_pred             CChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          209 FDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       209 lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+||+||+++|+|++.+|+|||+||||++||+..++.+.++|.+
T Consensus       153 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  197 (262)
T PRK09984        153 LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRD  197 (262)
T ss_pred             cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999998864

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=8.3e-31  Score=226.18  Aligned_cols=171  Identities=14%  Similarity=0.126  Sum_probs=127.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCce-ecCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~--~~p~~G~-~~~~~~~----  147 (254)
                      |..++++||++.|++..    +++|+||++++|++++|+||||||||||+++|+|+++.  ..|++|+ .++|...    
T Consensus         1 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~   76 (250)
T PRK14240          1 MGKISVKDLDLFYGDFQ----ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSD   76 (250)
T ss_pred             CCeEEEEEEEEEECCce----eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence            34689999999998633    66999999999999999999999999999999998741  0126899 6666422    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (254)
                            ....++ +.++.. ++.  .++.+++.+.....+.. .......+.++++.+++.      .+.++..||+||+
T Consensus        77 ~~~~~~~~~i~~-~~q~~~-~~~--~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  152 (250)
T PRK14240         77 IDVNQLRKRVGM-VFQQPN-PFP--MSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQ  152 (250)
T ss_pred             cchHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHH
Confidence                  112344 455432 222  57888887654433331 111234456666666552      3567789999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|++++.+|++||+||||++||+.+++.+.+++.+
T Consensus       153 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  191 (250)
T PRK14240        153 QRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQE  191 (250)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998854

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=99.97  E-value=5e-31  Score=226.40  Aligned_cols=166  Identities=19%  Similarity=0.083  Sum_probs=123.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCce-ecCCCCCC------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll--~~~~p~~G~-~~~~~~~~------  148 (254)
                      |+++||++.|++..    +++|+||++++|++++|+||||||||||+++|+|++  +   |++|+ .++|....      
T Consensus         1 l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~~   73 (243)
T TIGR01978         1 LKIKDLHVSVEDKE----ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYE---VTSGTILFKGQDLLELEPDE   73 (243)
T ss_pred             CeEeeEEEEECCEE----EEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCcceEEECCEecCCCCHHH
Confidence            46899999998632    569999999999999999999999999999999994  4   89999 56664211      


Q ss_pred             -CC--eEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-C------CCCccHHHHHHHHHhhccC---CCCCCC-CCChhhh
Q 025366          149 -PD--VATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A------PWTFNPLLLLNCLKNLRNQ---GSVYAP-SFDHGVG  214 (254)
Q Consensus       149 -~~--~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~------~~~~~~~~~~~~l~~l~l~---~~~~~~-~lS~G~~  214 (254)
                       ..  .++ +.++...+  +.+++.+++.+...... .      ........+.++++.+++.   .+..+. .||+||+
T Consensus        74 ~~~~~i~~-v~q~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~  150 (243)
T TIGR01978        74 RARAGLFL-AFQYPEEI--PGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEK  150 (243)
T ss_pred             hhccceEe-eecccccc--CCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHH
Confidence             11  233 44443322  23577777665432211 1      0011124567788888875   244555 4999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|++++.+|++|||||||++||+..++.+.++|.+
T Consensus       151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  189 (243)
T TIGR01978       151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINR  189 (243)
T ss_pred             HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.97  E-value=2.4e-31  Score=250.87  Aligned_cols=168  Identities=18%  Similarity=0.171  Sum_probs=130.5

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ++++++||++.|++..    +++|+||++++|+++||+||||||||||+|+|+|+++   |++|+ .++|...       
T Consensus         3 ~~i~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~~~~~~   75 (501)
T PRK10762          3 ALLQLKGIDKAFPGVK----ALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYT---RDAGSILYLGKEVTFNGPKS   75 (501)
T ss_pred             ceEEEeeeEEEeCCeE----EeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHHH
Confidence            4799999999998632    5699999999999999999999999999999999997   99999 5666322       


Q ss_pred             --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc---C-CCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---G-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~---g-~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                        ....++ +.++...+.  .+++.+++.+.....   + .........+.++++.+++.  .+.++.+||+||+||+++
T Consensus        76 ~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~l  152 (501)
T PRK10762         76 SQEAGIGI-IHQELNLIP--QLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEI  152 (501)
T ss_pred             HHhCCEEE-EEcchhccC--CCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHH
Confidence              123454 555543222  368888776532211   1 11111224567788888876  356788999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+.+|++|||||||++||+..++.+.+++.+
T Consensus       153 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  186 (501)
T PRK10762        153 AKVLSFESKVIIMDEPTDALTDTETESLFRVIRE  186 (501)
T ss_pred             HHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988754

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=6e-31  Score=230.59  Aligned_cols=171  Identities=13%  Similarity=0.140  Sum_probs=130.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ++|+++||++.|++.. ...+++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...       
T Consensus         3 ~~l~~~~l~~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~i~~~~~~~   78 (277)
T PRK13642          3 KILEVENLVFKYEKES-DVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFE---EFEGKVKIDGELLTAENVWN   78 (277)
T ss_pred             ceEEEEEEEEEcCCCC-cCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCEECCcCCHHH
Confidence            3799999999997521 1226799999999999999999999999999999999998   99999 6666432       


Q ss_pred             -CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          148 -PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       148 -~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                       ....|+ +.++.. .+..  .++.+++.+.....+.........+..+++.+++.  .+..+..||+||+||+++|+++
T Consensus        79 ~~~~i~~-v~q~~~~~~~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL  155 (277)
T PRK13642         79 LRRKIGM-VFQNPDNQFVG--ATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGII  155 (277)
T ss_pred             HhcceEE-EEECHHHhhcc--CCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHH
Confidence             122454 555532 2222  57888886543333332211223456777777764  4567789999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++||+||||++||+.+++.+.++|.+
T Consensus       156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~  185 (277)
T PRK13642        156 ALRPEIIILDESTSMLDPTGRQEIMRVIHE  185 (277)
T ss_pred             HcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998853

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=99.97  E-value=1.4e-31  Score=215.13  Aligned_cols=164  Identities=15%  Similarity=0.166  Sum_probs=128.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----CCCe
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPDV  151 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~~~~  151 (254)
                      ++.+++|.+.|+...      -..+++|+.||+++|+||||||||||+++|+|+..   |.+|+ ++.|...    +...
T Consensus         1 ~l~L~~V~~~y~~~~------~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~---P~~G~i~i~g~d~t~~~P~~R   71 (231)
T COG3840           1 MLALDDVRFSYGHLP------MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFET---PASGEILINGVDHTASPPAER   71 (231)
T ss_pred             CccccceEEeeCcce------EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccC---CCCceEEEcCeecCcCCcccC
Confidence            367889999998854      56889999999999999999999999999999997   99999 6666432    1111


Q ss_pred             -EEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          152 -ATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       152 -g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                       ..++.++.. ++.+ +++.+|+..... -+. -...+.+++..++..+++.  .++.+.+|||||||||++||+++++.
T Consensus        72 PVSmlFQEnN-LFaH-LtV~qNigLGl~-P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~  148 (231)
T COG3840          72 PVSMLFQENN-LFAH-LTVAQNIGLGLS-PGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQ  148 (231)
T ss_pred             Chhhhhhccc-cchh-hhhhhhhcccCC-cccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccC
Confidence             233444443 3322 777777644221 111 2345667788899999887  57788999999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +|++|||||+.|||.-+.++..++.
T Consensus       149 PilLLDEPFsALdP~LR~eMl~Lv~  173 (231)
T COG3840         149 PILLLDEPFSALDPALRAEMLALVS  173 (231)
T ss_pred             CeEEecCchhhcCHHHHHHHHHHHH
Confidence            9999999999999999999988874

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=6.9e-31  Score=229.29  Aligned_cols=169  Identities=14%  Similarity=0.107  Sum_probs=127.7

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCce-ecCCCCC-----
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~--~~p~~G~-~~~~~~~-----  147 (254)
                      .+++++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++.  .+|++|+ .++|...     
T Consensus        12 ~~l~i~nl~~~~~~~~----il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~   87 (269)
T PRK14259         12 IIISLQNVTISYGTFE----AVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV   87 (269)
T ss_pred             ceEEEEeEEEEECCEE----EEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence            4799999999998633    66999999999999999999999999999999999741  1258999 5666321     


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC------CCCCCCCCChhhhhh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDP  216 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~qr  216 (254)
                           ....++ +.++.. ++.  .++.+++.+.....+.. ........++++.+++.      .+.++..||+||+||
T Consensus        88 ~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr  162 (269)
T PRK14259         88 DPVEVRRRIGM-VFQQPN-PFP--KSIYENIAFGARINGYT-GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQR  162 (269)
T ss_pred             CHHHHhhceEE-EccCCc-cch--hhHHHHHhhhhhhcCCc-HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHH
Confidence                 123444 555443 222  37778776544333322 11233455667766552      356778999999999


Q ss_pred             HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++|+|++.+|++||+||||++||+.+++.+.++|.+
T Consensus       163 l~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~  199 (269)
T PRK14259        163 LCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHE  199 (269)
T ss_pred             HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998864

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=99.97  E-value=1.7e-31  Score=227.21  Aligned_cols=163  Identities=15%  Similarity=0.095  Sum_probs=125.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEe
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL  155 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i  155 (254)
                      .+.++++++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|.....     .
T Consensus        22 ~l~~~~~~~~~~~~~----il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---p~~G~i~~~g~~~~~-----~   89 (224)
T cd03220          22 KLGILGRKGEVGEFW----ALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP---PDSGTVTVRGRVSSL-----L   89 (224)
T ss_pred             hhhhhhhhhhcCCeE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEchh-----h
Confidence            378899999999843    6699999999999999999999999999999999997   99999 566542110     0


Q ss_pred             eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEe
Q 025366          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (254)
Q Consensus       156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlD  233 (254)
                      . .+..+ .+.+++.+++.+.....+...........++++.+++.  .+..+..||+||+||+++|++++.+|++||+|
T Consensus        90 ~-~~~~~-~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllD  167 (224)
T cd03220          90 G-LGGGF-NPELTGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLID  167 (224)
T ss_pred             c-ccccC-CCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence            0 01111 12368888876654433332222233456677777665  35677899999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHhhc
Q 025366          234 GNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       234 Ep~~~lD~~~~~~l~~ll~~  253 (254)
                      |||++||+.+++.+.+++.+
T Consensus       168 EP~~gLD~~~~~~~~~~l~~  187 (224)
T cd03220         168 EVLAVGDAAFQEKCQRRLRE  187 (224)
T ss_pred             CCcccCCHHHHHHHHHHHHH
Confidence            99999999999999988854

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=3.1e-31  Score=250.36  Aligned_cols=169  Identities=17%  Similarity=0.172  Sum_probs=131.1

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCce-ecCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p--~~G~-~~~~~~~----  147 (254)
                      +++++++||++.|++.  .  +++++||++++|++++|+||||||||||+|+|+|+++   |  ++|+ .++|...    
T Consensus         3 ~~~l~~~nl~~~~~~~--~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---~~~~~G~i~~~g~~~~~~~   75 (506)
T PRK13549          3 EYLLEMKNITKTFGGV--K--ALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP---HGTYEGEIIFEGEELQASN   75 (506)
T ss_pred             CceEEEeeeEEEeCCe--E--eecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCC
Confidence            3579999999999863  2  6699999999999999999999999999999999985   5  7999 5666322    


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc--CC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhH
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--GA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV  217 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~--g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv  217 (254)
                           ....++ +.++...+.  .+++.+++.+.....  +. ........+.++++.+++.  .+.++..||+||+||+
T Consensus        76 ~~~~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv  152 (506)
T PRK13549         76 IRDTERAGIAI-IHQELALVK--ELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLV  152 (506)
T ss_pred             HHHHHHCCeEE-EEeccccCC--CCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHH
Confidence                 123454 555543222  368888776543211  11 1112234567888888875  4667889999999999


Q ss_pred             hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|+||+.+|++|||||||++||+..+..+.++|.+
T Consensus       153 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  188 (506)
T PRK13549        153 EIAKALNKQARLLILDEPTASLTESETAVLLDIIRD  188 (506)
T ss_pred             HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998854

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=9e-31  Score=225.59  Aligned_cols=169  Identities=15%  Similarity=0.154  Sum_probs=129.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      +++++|+++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|++....|++|+ .++|...        
T Consensus         2 ~~~~~~l~~~~~~~--~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~   77 (246)
T PRK14269          2 IAKTTNLNLFYGKK--Q--ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVAL   77 (246)
T ss_pred             ceeeeeeEEEECCE--e--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHH
Confidence            47899999999863  2  569999999999999999999999999999999997421268999 6666422        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC--CccHHHHHHHHHhhccC------CCCCCCCCChhhhhhHhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW--TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~--~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~qrv~i  219 (254)
                      ....++ +.++... +.  .++.+++.+.....+...  ......+.++++.+++.      .+..+..||+||+||+++
T Consensus        78 ~~~i~~-~~q~~~l-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l  153 (246)
T PRK14269         78 RKNVGM-VFQQPNV-FV--KSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCI  153 (246)
T ss_pred             hhhEEE-EecCCcc-cc--ccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHH
Confidence            123454 5555433 32  478888765433333211  12234567788888874      345678999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++++.+|++||+||||++||+.++..+.++|.+
T Consensus       154 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~  187 (246)
T PRK14269        154 ARALAIKPKLLLLDEPTSALDPISSGVIEELLKE  187 (246)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998854

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=99.97  E-value=6.4e-31  Score=230.96  Aligned_cols=169  Identities=14%  Similarity=0.154  Sum_probs=131.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC---ce-ecCCCCC-----
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK---AS-SFDSQVK-----  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~---G~-~~~~~~~-----  147 (254)
                      +|+++|+++.|++....  +++++||++++|++++|+||||||||||+++|+|++.   |+.   |+ .++|...     
T Consensus         5 ~l~i~~l~~~~~~~~~~--~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~---p~~g~~G~i~i~g~~~~~~~~   79 (282)
T PRK13640          5 IVEFKHVSFTYPDSKKP--ALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLL---PDDNPNSKITVDGITLTAKTV   79 (282)
T ss_pred             eEEEEEEEEEcCCCCcc--ceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCCCCCcEEEECCEECCcCCH
Confidence            69999999999752222  6799999999999999999999999999999999997   887   78 5666432     


Q ss_pred             ---CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          148 ---PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       148 ---~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                         ....|+ +.++.. .++.  .++.+++.+.....+.........+.++++.+++.  .+.++..||+||+||+++|+
T Consensus        80 ~~~~~~ig~-v~q~~~~~~~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~lar  156 (282)
T PRK13640         80 WDIREKVGI-VFQNPDNQFVG--ATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAG  156 (282)
T ss_pred             HHHHhheEE-EEECHHHhhcc--CCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHH
Confidence               123454 555532 2222  58888887644444432222234567788888876  46778899999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++.+|++||+||||++||+..++.+.++|.+
T Consensus       157 al~~~P~llllDEPt~gLD~~~~~~l~~~l~~  188 (282)
T PRK13640        157 ILAVEPKIIILDESTSMLDPAGKEQILKLIRK  188 (282)
T ss_pred             HHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998853

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=99.97  E-value=6.4e-31  Score=222.85  Aligned_cols=171  Identities=19%  Similarity=0.134  Sum_probs=129.9

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      +++++|+++.|++..+...+++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 ~l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   77 (220)
T TIGR02982         1 VISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRS---VQEGSLKVLGQELYGASEKEL   77 (220)
T ss_pred             CEEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEhHhcCHhHH
Confidence            37889999999752111226799999999999999999999999999999999997   99999 66664321       


Q ss_pred             ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-CCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                          ...++ +.++...+.  .+++.+++.+...... .........+.++++.+++.  .+..+..||+||+||+++|+
T Consensus        78 ~~~~~~i~~-~~q~~~~~~--~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~lar  154 (220)
T TIGR02982        78 VQLRRNIGY-IFQAHNLLG--FLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIAR  154 (220)
T ss_pred             HHHHhheEE-EcCChhhcC--CCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHH
Confidence                22343 444432222  2578887776443222 11112234567888888876  35677899999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++.+|++||+|||+++||+.+++.+.++|.+
T Consensus       155 al~~~p~illlDEP~~~LD~~~~~~l~~~l~~  186 (220)
T TIGR02982       155 ALVHRPKLVLADEPTAALDSKSGRDVVELMQK  186 (220)
T ss_pred             HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998854

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.97  E-value=5.8e-31  Score=209.69  Aligned_cols=170  Identities=19%  Similarity=0.174  Sum_probs=141.3

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ++|++++++|..+.....+.+|++|+|.|++||-++|+||||||||||+-+++|+..   |++|+ .+.|+..       
T Consensus         5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~---~ssGeV~l~G~~L~~ldEd~   81 (228)
T COG4181           5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDD---PSSGEVRLLGQPLHKLDEDA   81 (228)
T ss_pred             ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCC---CCCceEEEcCcchhhcCHHH
Confidence            479999999999887777888899999999999999999999999999999999998   99999 5555321       


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia  220 (254)
                           ...+|. +++ .|++-. .++..||........|-............++.++++.  .-|+.+||||++|||+||
T Consensus        82 rA~~R~~~vGf-VFQ-SF~Lip-~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiA  158 (228)
T COG4181          82 RAALRARHVGF-VFQ-SFHLIP-NLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALA  158 (228)
T ss_pred             HHHhhccceeE-EEE-eeeccc-cchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHH
Confidence                 234564 333 344322 2889999888777766433344556788999999984  568899999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      ||++..|+||+.||||..||...-++|.+++
T Consensus       159 RAfa~~P~vLfADEPTGNLD~~Tg~~iaDLl  189 (228)
T COG4181         159 RAFAGRPDVLFADEPTGNLDRATGDKIADLL  189 (228)
T ss_pred             HHhcCCCCEEeccCCCCCcchhHHHHHHHHH
Confidence            9999999999999999999999999999886

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.97  E-value=5.1e-31  Score=249.09  Aligned_cols=166  Identities=17%  Similarity=0.139  Sum_probs=131.3

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC----
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----  148 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----  148 (254)
                      ++++++++||++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....    
T Consensus         8 ~~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~   80 (510)
T PRK15439          8 APPLLCARSISKQYSGVE----VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP---PDSGTLEIGGNPCARLTP   80 (510)
T ss_pred             CCceEEEEeEEEEeCCce----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCH
Confidence            456899999999998733    5699999999999999999999999999999999997   99999 56663221    


Q ss_pred             -----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       149 -----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                           ...++ +.++...+.  .+++.+++.+...    ........+.++++.+++.  .+.++..||+||+||+++|+
T Consensus        81 ~~~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~  153 (510)
T PRK15439         81 AKAHQLGIYL-VPQEPLLFP--NLSVKENILFGLP----KRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILR  153 (510)
T ss_pred             HHHHhCCEEE-EeccCccCC--CCcHHHHhhcccc----cchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHH
Confidence                 12454 555543222  2677777654211    1112235567788888875  46778899999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|+.+|++|||||||++||+..++.+.++|.+
T Consensus       154 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  185 (510)
T PRK15439        154 GLMRDSRILILDEPTASLTPAETERLFSRIRE  185 (510)
T ss_pred             HHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998854

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1e-30  Score=225.72  Aligned_cols=170  Identities=16%  Similarity=0.159  Sum_probs=127.9

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC-----
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~-----  147 (254)
                      ++++++|+++.|+..  .  +++++||++++|++++|+|+||||||||+++|+|+++  ...|++|+ .++|...     
T Consensus         3 ~~l~~~~l~~~~~~~--~--~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~   78 (251)
T PRK14251          3 NIISAKDVHLSYGNY--E--ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM   78 (251)
T ss_pred             ceEEEEeeEEEECCe--e--eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc
Confidence            478999999999863  2  6699999999999999999999999999999999984  00137899 5666421     


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (254)
                           ....++ +.++... +.  .++.+++.+.....+... ......+.++++.+++.      .+..+..||+||+|
T Consensus        79 ~~~~~~~~i~~-~~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q  154 (251)
T PRK14251         79 DLVELRKEVGM-VFQQPTP-FP--FSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ  154 (251)
T ss_pred             hHHHhhccEEE-EecCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence                 112343 4554432 22  578888765443333321 11223456677777662      35677899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|+|++.+|++||+||||++||+.+++.+.+++.+
T Consensus       155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  192 (251)
T PRK14251        155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLME  192 (251)
T ss_pred             HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=99.97  E-value=1.2e-30  Score=217.33  Aligned_cols=160  Identities=13%  Similarity=0.081  Sum_probs=123.5

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC----CCe
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP----PDV  151 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~----~~~  151 (254)
                      +++++|+++.|++  +.  +++ +||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|....    ...
T Consensus         1 ~l~~~~l~~~~~~--~~--l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~i~~~~~~~~   72 (195)
T PRK13541          1 MLSLHQLQFNIEQ--KN--LFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQ---PSSGNIYYKNCNINNIAKPYC   72 (195)
T ss_pred             CeEEEEeeEEECC--cE--EEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCcccChhhhhhE
Confidence            3789999999975  22  335 999999999999999999999999999999997   99999 66664321    123


Q ss_pred             EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcE
Q 025366          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (254)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~v  229 (254)
                      ++ +.+....++  ..++.+++.+.....+     ......++++.+++.  .+..+..||+||+||+++|++++.+|++
T Consensus        73 ~~-~~~~~~~~~--~~tv~~~l~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~  144 (195)
T PRK13541         73 TY-IGHNLGLKL--EMTVFENLKFWSEIYN-----SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDL  144 (195)
T ss_pred             Ee-ccCCcCCCc--cCCHHHHHHHHHHhcc-----cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCE
Confidence            33 443332222  2678888765433221     234556677777765  4567789999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHhh
Q 025366          230 VIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       230 lIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +|+||||++||+..++.+.+++.
T Consensus       145 lllDEP~~~LD~~~~~~l~~~l~  167 (195)
T PRK13541        145 WLLDEVETNLSKENRDLLNNLIV  167 (195)
T ss_pred             EEEeCCcccCCHHHHHHHHHHHH
Confidence            99999999999999999999885

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=99.97  E-value=8.4e-31  Score=223.92  Aligned_cols=166  Identities=16%  Similarity=0.151  Sum_probs=129.1

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (254)
                      |+++++++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+++   |+.|+ .++|...      ...
T Consensus         1 l~~~~l~~~~~~~--~--il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~---~~~G~i~~~g~~~~~~~~~~~~   73 (232)
T cd03300           1 IELENVSKFYGGF--V--ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET---PTSGEILLDGKDITNLPPHKRP   73 (232)
T ss_pred             CEEEeEEEEeCCe--e--eeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcc
Confidence            4688999999873  2  5699999999999999999999999999999999997   99999 6666422      123


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      .++ +.++...+.  .+++.+++.+.....+.........+..+++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        74 i~~-~~q~~~~~~--~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~  150 (232)
T cd03300          74 VNT-VFQNYALFP--HLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPK  150 (232)
T ss_pred             eEE-EecccccCC--CCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            444 555543322  257777776544333322222234566778877776  466778999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|+||||++||+..++.+.+++.+
T Consensus       151 llllDEP~~gLD~~~~~~l~~~l~~  175 (232)
T cd03300         151 VLLLDEPLGALDLKLRKDMQLELKR  175 (232)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999988853

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.5e-30  Score=224.88  Aligned_cols=171  Identities=12%  Similarity=0.096  Sum_probs=127.6

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC-----
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~-----  147 (254)
                      ..++++|+++.|++..    +++|+||+|++|++++|+|+||||||||+++|+|+++  ...|++|+ .++|...     
T Consensus         3 ~~l~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~   78 (252)
T PRK14256          3 NKVKLEQLNVHFGKNH----AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGV   78 (252)
T ss_pred             cEEEEEEEEEEeCCee----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccC
Confidence            4689999999998632    6699999999999999999999999999999999973  00136899 6666322     


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (254)
                           ....++ +.++...+.  .+++.+++.+.....+.. .......+.++++.+++.      .+..+..||+||+|
T Consensus        79 ~~~~~~~~i~~-~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q  155 (252)
T PRK14256         79 DPVSIRRRVGM-VFQKPNPFP--AMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQ  155 (252)
T ss_pred             ChHHhhccEEE-EecCCCCCC--cCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHH
Confidence                 112343 555543222  257788776543332321 112234456777777763      24567899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|++++.+|++||+||||++||+.+++.+.++|++
T Consensus       156 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~  193 (252)
T PRK14256        156 RLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEE  193 (252)
T ss_pred             HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=1.2e-31  Score=231.54  Aligned_cols=171  Identities=16%  Similarity=0.219  Sum_probs=142.9

Q ss_pred             cceEEEecceeecccccc--------------------eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc
Q 025366           75 IPVVEARCMDEVYDALAQ--------------------RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI  134 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~--------------------~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~  134 (254)
                      +..|+++||.|.||....                    .++.++|+||+|++|||..|+|-||||||||+|+|++++.  
T Consensus         2 ~~~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLie--   79 (386)
T COG4175           2 MVKIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIE--   79 (386)
T ss_pred             CceEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCC--
Confidence            467899999999986421                    3557789999999999999999999999999999999998  


Q ss_pred             CCCCce-ecCCCCC------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC
Q 025366          135 WPQKAS-SFDSQVK------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ  201 (254)
Q Consensus       135 ~p~~G~-~~~~~~~------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~  201 (254)
                       |++|+ .++|...            +.+.. ++++ .|-+.++ .++.+|..|.....|++.....++..+.++.+++.
T Consensus        80 -pt~G~ilv~g~di~~~~~~~Lr~~Rr~~~s-MVFQ-~FaLlPh-rtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~  155 (386)
T COG4175          80 -PTRGEILVDGKDIAKLSAAELRELRRKKIS-MVFQ-SFALLPH-RTVLENVAFGLEVQGVPKAEREERALEALELVGLE  155 (386)
T ss_pred             -CCCceEEECCcchhcCCHHHHHHHHhhhhh-hhhh-hhccccc-hhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCch
Confidence             99999 6777432            12223 2333 2222222 68999999999999998888888899999999987


Q ss_pred             --CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          202 --GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       202 --~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                        .+.|+.+|||||+|||.+||||+.+|+||++||||+.|||--+.++.+.+
T Consensus       156 ~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeL  207 (386)
T COG4175         156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDEL  207 (386)
T ss_pred             hhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHH
Confidence              67899999999999999999999999999999999999999888887765

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=99.97  E-value=6.5e-31  Score=227.73  Aligned_cols=166  Identities=14%  Similarity=0.117  Sum_probs=127.7

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (254)
                      |+++|+++.|++..    +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...        .
T Consensus         2 l~~~~l~~~~~~~~----il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   74 (256)
T TIGR03873         2 LRLSRVSWSAGGRL----IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR---PDAGTVDLAGVDLHGLSRRARA   74 (256)
T ss_pred             ceEEeEEEEECCEE----EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCCEEEECCEEcccCCHHHHh
Confidence            57899999998733    6699999999999999999999999999999999997   99999 6666321        1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHH-H---cCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHA-R---RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~---~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                      ...++ +.++.....  .+++.+++.+... .   ++.........+.++++.+++.  .+..+..||+||+||+++|+|
T Consensus        75 ~~i~~-~~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~a  151 (256)
T TIGR03873        75 RRVAL-VEQDSDTAV--PLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARA  151 (256)
T ss_pred             hheEE-ecccCccCC--CCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHH
Confidence            12343 444432111  2578887765321 1   1111112334567788887775  366788999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|+++|+||||++||+..+..+.++|.+
T Consensus       152 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~  182 (256)
T TIGR03873       152 LAQEPKLLLLDEPTNHLDVRAQLETLALVRE  182 (256)
T ss_pred             HhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998864

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.3e-30  Score=229.43  Aligned_cols=170  Identities=14%  Similarity=0.123  Sum_probs=129.9

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~----  147 (254)
                      .++|++++|++.|++.  .  +++++||+|++|++++|+|+||||||||+++|+|+++..  .|++|+ .++|...    
T Consensus        37 ~~~l~i~~l~~~~~~~--~--il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~  112 (285)
T PRK14254         37 ETVIEARDLNVFYGDE--Q--ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDAD  112 (285)
T ss_pred             CceEEEEEEEEEECCE--e--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccc
Confidence            4679999999999863  2  669999999999999999999999999999999998410  147999 5665321    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (254)
                            ....++ +.++... +.  .++.+++.+.....+... .....+.++++.+++.      .+.++..||+||+|
T Consensus       113 ~~~~~~~~~i~~-v~q~~~l-~~--~tv~enl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~q  187 (285)
T PRK14254        113 VDPVALRRRIGM-VFQKPNP-FP--KSIYDNVAYGLKIQGYDG-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQ  187 (285)
T ss_pred             cchHhhhccEEE-EecCCcc-Cc--CCHHHHHHHHHHHcCCcH-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHH
Confidence                  112343 5555432 22  377787765443333322 2234567778777763      35678899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|++|+.+|+||||||||++||+..++.+.++|.+
T Consensus       188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~  225 (285)
T PRK14254        188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEE  225 (285)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.8e-30  Score=224.29  Aligned_cols=167  Identities=14%  Similarity=0.139  Sum_probs=126.2

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Cce-ecCCCCC--
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK--  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~-~~~~~~~--  147 (254)
                      ++++++||++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |+     .|+ .++|...  
T Consensus         3 ~~l~~~~l~~~~~~~--~--il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~~G~v~~~g~~~~~   75 (251)
T PRK14249          3 PKIKIRGVNFFYHKH--Q--VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMND---IVSGARLEGAVLLDNENIYS   75 (251)
T ss_pred             ceEEEEEEEEEECCe--e--EecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---ccccCCcccEEEECCEEccc
Confidence            579999999999863  2  5699999999999999999999999999999999996   76     588 5665321  


Q ss_pred             --------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChh
Q 025366          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (254)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G  212 (254)
                              ....++ +.++...+ .  .++.+++.+.....+... ......+..+++.+++.      .+..+..||+|
T Consensus        76 ~~~~~~~~~~~i~~-v~q~~~~~-~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G  151 (251)
T PRK14249         76 PNLDVVNLRKRVGM-VFQQPNPF-P--KSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGG  151 (251)
T ss_pred             cccChHHhhceEEE-EecCCccC-c--CcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHH
Confidence                    122444 55554332 2  377888765443333221 11123345556655542      35678899999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+++|++++.+|++||+||||++||+..+..+.++|.+
T Consensus       152 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  192 (251)
T PRK14249        152 QQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE  192 (251)
T ss_pred             HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999988853

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.8e-31  Score=229.22  Aligned_cols=169  Identities=13%  Similarity=0.163  Sum_probs=128.9

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      ..+|+++||++.|++..    +++++||++.+|++++|+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus         5 ~~~l~i~~l~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~   77 (265)
T PRK10253          5 VARLRGEQLTLGYGKYT----VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT---PAHGHVWLDGEHIQHYASK   77 (265)
T ss_pred             ccEEEEEEEEEEECCEE----EeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEEhhhCCHH
Confidence            35799999999998632    6699999999999999999999999999999999997   99999 6666421      


Q ss_pred             --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCC---CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                        ....++ +.++...+.  ..++.+++.+... ..+.   ........+.++++.+++.  .+..+..||+||+||+++
T Consensus        78 ~~~~~i~~-v~q~~~~~~--~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~l  154 (265)
T PRK10253         78 EVARRIGL-LAQNATTPG--DITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWI  154 (265)
T ss_pred             HHhhheEE-eeccCcCCC--CCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHH
Confidence              123454 555543322  2567666644211 0111   0111233566788877775  467888999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+|++.+|++||+||||++||+.+++.+.++|.+
T Consensus       155 aral~~~p~llllDEPt~gLD~~~~~~l~~~L~~  188 (265)
T PRK10253        155 AMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE  188 (265)
T ss_pred             HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998853

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=5.4e-31  Score=224.85  Aligned_cols=145  Identities=17%  Similarity=0.241  Sum_probs=119.6

Q ss_pred             cceEEEecceeecccccc-----eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCC
Q 025366           75 IPVVEARCMDEVYDALAQ-----RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPP  149 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~-----~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~  149 (254)
                      +++++++||+|.|.....     .+.|++||||+|++||++||+|+||||||||.|+|.|+++   |++|+         
T Consensus         2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~---pt~G~---------   69 (268)
T COG4608           2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE---PTSGE---------   69 (268)
T ss_pred             CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcC---CCCce---------
Confidence            568999999999975321     3578999999999999999999999999999999999996   66654         


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                           |.++|.++..  +.               .....+++.++++.+++.   ..+++++|||||+||++|||||+.+
T Consensus        70 -----i~f~g~~i~~--~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~  127 (268)
T COG4608          70 -----ILFEGKDITK--LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALN  127 (268)
T ss_pred             -----EEEcCcchhh--cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhC
Confidence                 4455543211  11               112345678888888876   5789999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|+|||+++||...+.++.+++.+
T Consensus       128 P~liV~DEpvSaLDvSiqaqIlnLL~d  154 (268)
T COG4608         128 PKLIVADEPVSALDVSVQAQILNLLKD  154 (268)
T ss_pred             CcEEEecCchhhcchhHHHHHHHHHHH
Confidence            999999999999999999999999853

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=99.97  E-value=9.4e-31  Score=242.61  Aligned_cols=178  Identities=16%  Similarity=0.197  Sum_probs=144.7

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc-CCCCce-ecCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI-WPQKAS-SFDSQVK------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~-~p~~G~-~~~~~~~------  147 (254)
                      ++|+++||++.|......+.+++||||++++||++||+|.|||||||+++.|.|+++.. ...+|+ .++|...      
T Consensus         4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~   83 (539)
T COG1123           4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER   83 (539)
T ss_pred             ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence            48999999999987655566889999999999999999999999999999999999621 113688 6776321      


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-CCCCccHHHHHHHHHhhccCC----CCCCCCCChhhhhhH
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQG----SVYAPSFDHGVGDPV  217 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~~----~~~~~~lS~G~~qrv  217 (254)
                           +.....++.|+.....++.+++.+.+.......+ ........+..++++.+++..    +.|+++|||||+||+
T Consensus        84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQRv  163 (539)
T COG1123          84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRV  163 (539)
T ss_pred             HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHHHH
Confidence                 2233345889888877777777777766665554 234455677889999998862    358999999999999


Q ss_pred             hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .||+||+.+|++||+||||++||+..+.+|.++|++
T Consensus       164 ~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~  199 (539)
T COG1123         164 MIAMALALKPKLLIADEPTTALDVTTQAQILDLLKD  199 (539)
T ss_pred             HHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999864

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.7e-30  Score=225.56  Aligned_cols=171  Identities=15%  Similarity=0.157  Sum_probs=128.6

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCce-ecCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p--~~G~-~~~~~~~----  147 (254)
                      +++++++||++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+++...|  ++|+ .++|...    
T Consensus         5 ~~~l~~~~l~~~~~~~--~--il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   80 (259)
T PRK14260          5 IPAIKVKDLSFYYNTS--K--AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPR   80 (259)
T ss_pred             cceEEEEEEEEEECCe--E--eecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccc
Confidence            5689999999999863  2  56999999999999999999999999999999999851001  4898 5665321    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (254)
                            ....++ +.++... +.  .++.+++.+.....+. ++........++++.+++.      .+..+..||+||+
T Consensus        81 ~~~~~~~~~i~~-v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~  156 (259)
T PRK14260         81 ININRLRRQIGM-VFQRPNP-FP--MSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQ  156 (259)
T ss_pred             cchHhhhhheEE-Eeccccc-CC--ccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHH
Confidence                  123444 5555432 22  5888887654333321 2222233456677776652      4567789999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|+|++.+|++|||||||++||+.++..+.++|.+
T Consensus       157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  195 (259)
T PRK14260        157 QRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHS  195 (259)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=99.97  E-value=1.1e-30  Score=223.83  Aligned_cols=166  Identities=17%  Similarity=0.227  Sum_probs=128.4

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (254)
                      ++++++++.|++.  .  +++++||++.+|++++|+|+||||||||+++|+|+++   |++|+ .++|...      ...
T Consensus         1 i~i~~l~~~~~~~--~--il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~i~g~~~~~~~~~~~~   73 (237)
T TIGR00968         1 IEIANISKRFGSF--Q--ALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ---PDSGRIRLNGQDATRVHARDRK   73 (237)
T ss_pred             CEEEEEEEEECCe--e--eeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEEcCcCChhhcC
Confidence            4689999999873  3  5699999999999999999999999999999999997   99999 5666322      122


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      .++ +.++...+.  ..++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|++++.+|+
T Consensus        74 i~~-~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~  150 (237)
T TIGR00968        74 IGF-VFQHYALFK--HLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQ  150 (237)
T ss_pred             EEE-EecChhhcc--CCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            343 454433222  257788876544333322222334567788887765  356678999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|+|||+++||+.+++.+.+++.+
T Consensus       151 llllDEP~~~LD~~~~~~~~~~l~~  175 (237)
T TIGR00968       151 VLLLDEPFGALDAKVRKELRSWLRK  175 (237)
T ss_pred             EEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998864

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.2e-30  Score=223.69  Aligned_cols=167  Identities=13%  Similarity=0.127  Sum_probs=124.0

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Cce-ecCCCCC---
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK---  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~-~~~~~~~---  147 (254)
                      +++++||++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+++   |+     +|+ .++|...   
T Consensus         4 ~l~~~~l~~~~~~~--~--~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~~~~~   76 (252)
T PRK14272          4 LLSAQDVNIYYGDK--Q--AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHD---LTPGARVTGRILLDGQDIYGP   76 (252)
T ss_pred             EEEEeeeEEEECCE--E--eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCcCCCCceeEEECCEEcccC
Confidence            68999999999863  2  5699999999999999999999999999999999985   53     798 5666321   


Q ss_pred             -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC-ccHHHHHHHHHhhcc------CCCCCCCCCChhh
Q 025366          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGV  213 (254)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l------~~~~~~~~lS~G~  213 (254)
                             ....++ +.++...+.  .+++.+++.+.....+.... .......+.++.+++      ..+..+..||+||
T Consensus        77 ~~~~~~~~~~i~~-~~q~~~~~~--~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~  153 (252)
T PRK14272         77 RVDPVAMRRRVGM-VFQKPNPFP--TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQ  153 (252)
T ss_pred             ccCHHHhhceeEE-EeccCccCc--CCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHH
Confidence                   112443 555543322  25788887654332222111 112233444444443      1356788999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|++++.+|++||+||||++||+.+++.+.+++.+
T Consensus       154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  193 (252)
T PRK14272        154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTD  193 (252)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.2e-30  Score=225.55  Aligned_cols=170  Identities=14%  Similarity=0.124  Sum_probs=124.8

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~----  147 (254)
                      .++|+++||++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|++...  .|++|+ .++|...    
T Consensus         8 ~~~l~i~~v~~~~~~~--~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   83 (264)
T PRK14243          8 ETVLRTENLNVYYGSF--L--AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPD   83 (264)
T ss_pred             ceEEEEeeeEEEECCE--E--EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccc
Confidence            3579999999999863  2  569999999999999999999999999999999997410  137899 5666322    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (254)
                            ....++ +.++.. ++.  .++.+++.+.....+.. .........+++.+++.      .+..+..||+||+|
T Consensus        84 ~~~~~~~~~i~~-v~q~~~-~~~--~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~q  158 (264)
T PRK14243         84 VDPVEVRRRIGM-VFQKPN-PFP--KSIYDNIAYGARINGYK-GDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQ  158 (264)
T ss_pred             cChHHHhhhEEE-EccCCc-ccc--ccHHHHHHhhhhhcCcc-hHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHH
Confidence                  112444 455433 222  36777776543322221 11123344555555542      35677899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|+|++.+|++||+||||++||+..++.+.+++.+
T Consensus       159 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  196 (264)
T PRK14243        159 RLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHE  196 (264)
T ss_pred             HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.97  E-value=7.3e-31  Score=248.04  Aligned_cols=168  Identities=15%  Similarity=0.132  Sum_probs=129.6

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++++++|+++.|++..    +++|+||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|....      
T Consensus         4 ~~l~~~~l~~~~~~~~----il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~   76 (510)
T PRK09700          4 PYISMAGIGKSFGPVH----ALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHE---PTKGTITINNINYNKLDHKL   76 (510)
T ss_pred             ceEEEeeeEEEcCCeE----EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC---CCccEEEECCEECCCCCHHH
Confidence            5799999999998633    5699999999999999999999999999999999997   99999 56663221      


Q ss_pred             ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHH----HcCCC---CCccHHHHHHHHHhhccC--CCCCCCCCChhhhhh
Q 025366          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHA----RRGAP---WTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP  216 (254)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~----~~g~~---~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qr  216 (254)
                         ...++ +.++...+.  .+++.+++.+...    .++..   .......+.++++.+++.  .+.++.+|||||+||
T Consensus        77 ~~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qr  153 (510)
T PRK09700         77 AAQLGIGI-IYQELSVID--ELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQM  153 (510)
T ss_pred             HHHCCeEE-EeecccccC--CCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHH
Confidence               23454 555433222  2677777654221    01111   011234567788888875  466788999999999


Q ss_pred             HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++|++|+.+|++|||||||++||+..+..+.++|.+
T Consensus       154 v~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  190 (510)
T PRK09700        154 LEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQ  190 (510)
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998864

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.2e-30  Score=224.05  Aligned_cols=172  Identities=13%  Similarity=0.107  Sum_probs=127.8

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC---
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~---  147 (254)
                      +.++|+++|+++.|++..    +|+|+||++++|++++|+||||||||||+++|+|++...  ++++|+ .++|...   
T Consensus         3 ~~~~i~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~   78 (253)
T PRK14261          3 MEIILSTKNLNLWYGEKH----ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDS   78 (253)
T ss_pred             ccceEEEeeeEEEECCee----eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccc
Confidence            356899999999998633    669999999999999999999999999999999987410  124898 5665321   


Q ss_pred             -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhh
Q 025366          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (254)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~  213 (254)
                             ....++ +.++... +.  .++.+++.+.....+... ......+.++++.+++.      .+..+..||+||
T Consensus        79 ~~~~~~~~~~i~~-~~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~  154 (253)
T PRK14261         79 GADVVALRRKIGM-VFQRPNP-FP--KSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQ  154 (253)
T ss_pred             ccchhhhhceEEE-EecCCcc-Cc--ccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHH
Confidence                   112343 4554432 22  378888876544333211 11123455666666552      356778999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|++++.+|+++|+||||++||+.+++.+.++|++
T Consensus       155 ~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~  194 (253)
T PRK14261        155 QQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIED  194 (253)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.4e-30  Score=226.42  Aligned_cols=173  Identities=16%  Similarity=0.113  Sum_probs=126.6

Q ss_pred             cCCcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC-
Q 025366           72 QREIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK-  147 (254)
Q Consensus        72 ~~~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~-  147 (254)
                      |...++|+++||++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|++...  .|++|+ .++|... 
T Consensus        15 ~~~~~~l~~~nl~~~~~~~--~--~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~   90 (274)
T PRK14265         15 NPDHSVFEVEGVKVFYGGF--L--ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY   90 (274)
T ss_pred             CCCCceEEEeeEEEEeCCe--E--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecc
Confidence            4446789999999999863  2  669999999999999999999999999999999997410  125898 5666321 


Q ss_pred             ---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC------CCCCCCCCChh
Q 025366          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (254)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G  212 (254)
                               ....++ +.++...+ .  .++.+++.+.....+... .......+.++.+++.      .+.++..||+|
T Consensus        91 ~~~~~~~~~~~~i~~-v~q~~~l~-~--~tv~~nl~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG  165 (274)
T PRK14265         91 DSQINSVKLRRQVGM-VFQRPNPF-P--KSIYENIAFAPRANGYKG-NLDELVEDSLRRAAIWEEVKDKLKEKGTALSGG  165 (274)
T ss_pred             cccchhHHHhhcEEE-EccCCccc-c--ccHHHHHHhHHHhcCchH-HHHHHHHHHHHHcccchhhHHHhcCCcccCCHH
Confidence                     122343 55554322 2  367777765432222211 1123344555655542      35677899999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+++|+|++.+|++||+||||++||+..++.+.++|.+
T Consensus       166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  206 (274)
T PRK14265        166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE  206 (274)
T ss_pred             HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998864

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=99.97  E-value=1.7e-30  Score=222.53  Aligned_cols=165  Identities=13%  Similarity=0.146  Sum_probs=128.2

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (254)
                      |+++++++.|++  .   +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...      ...
T Consensus         1 l~~~~l~~~~~~--~---~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~---p~~G~v~i~g~~~~~~~~~~~~   72 (235)
T cd03299           1 LKVENLSKDWKE--F---KLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIK---PDSGKILLNGKDITNLPPEKRD   72 (235)
T ss_pred             CeeEeEEEEeCC--c---eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEEcCcCChhHcC
Confidence            468899999975  2   5699999999999999999999999999999999997   99999 6666322      123


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      .+. +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+..+..||+||+||+++|+|++.+|+
T Consensus        73 i~~-~~q~~~~~~--~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~  149 (235)
T cd03299          73 ISY-VPQNYALFP--HMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPK  149 (235)
T ss_pred             EEE-EeecCccCC--CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCC
Confidence            444 555443222  267888876544333322222234556788888776  456778999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|+||||++||+.+++.+.+++.+
T Consensus       150 llllDEPt~gLD~~~~~~l~~~l~~  174 (235)
T cd03299         150 ILLLDEPFSALDVRTKEKLREELKK  174 (235)
T ss_pred             EEEECCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999988753

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.9e-30  Score=225.10  Aligned_cols=171  Identities=13%  Similarity=0.135  Sum_probs=126.0

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~----  147 (254)
                      .++++++|+++.|++..    +++++||++++|++++|+|+||||||||+++|+|+....  .|++|+ .++|...    
T Consensus        19 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~   94 (268)
T PRK14248         19 EHILEVKDLSIYYGEKR----AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSN   94 (268)
T ss_pred             CceEEEEEEEEEeCCce----eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEccccc
Confidence            35799999999998633    569999999999999999999999999999999986200  158999 5665321    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (254)
                            ....++ +.++... +.  .++.+++.+.....+... ........+.++.+++.      .+..+..||+||+
T Consensus        95 ~~~~~~~~~i~~-v~q~~~~-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~  170 (268)
T PRK14248         95 INVVNLRREIGM-VFQKPNP-FP--KSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQ  170 (268)
T ss_pred             ccHHHHhccEEE-EecCCcc-Cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHH
Confidence                  112344 5554432 22  367777765432222111 11123345666666653      3567889999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|++++.+|++|||||||++||+.+++.+.+++.+
T Consensus       171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  209 (268)
T PRK14248        171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITE  209 (268)
T ss_pred             HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998853

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.6e-30  Score=250.75  Aligned_cols=175  Identities=16%  Similarity=0.177  Sum_probs=135.4

Q ss_pred             cceEEEecceeeccccc-------ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC
Q 025366           75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV  146 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~-------~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~  146 (254)
                      .++|+++||++.|+...       ....+++++||+|++|+++||+|+||||||||+++|+|+++   |++|+ .++|..
T Consensus       311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~  387 (623)
T PRK10261        311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVE---SQGGEIIFNGQR  387 (623)
T ss_pred             CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCcEEEECCEE
Confidence            36899999999996210       01236799999999999999999999999999999999997   99999 666632


Q ss_pred             C-----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC---CCCCCCCCCh
Q 025366          147 K-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---GSVYAPSFDH  211 (254)
Q Consensus       147 ~-----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~---~~~~~~~lS~  211 (254)
                      .           ...+++ +.++.+....+.+++.+++.+.....+.. .......+.++++.+++.   .+.++.+|||
T Consensus       388 i~~~~~~~~~~~~~~i~~-v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSg  466 (623)
T PRK10261        388 IDTLSPGKLQALRRDIQF-IFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSG  466 (623)
T ss_pred             CCcCCHHHHHHhcCCeEE-EecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCH
Confidence            1           123454 66665322223368888876644333321 112234667888988884   4678899999


Q ss_pred             hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||++||+||+.+|+|||+||||++||+..+.++.++|.+
T Consensus       467 GqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~  508 (623)
T PRK10261        467 GQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD  508 (623)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999853

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=99.97  E-value=1.5e-30  Score=219.59  Aligned_cols=160  Identities=15%  Similarity=0.175  Sum_probs=122.7

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (254)
                      +.+ +|+|.|++..    +  |+||++++ ++++|+||||||||||+++|+|+++   |++|+ .++|...         
T Consensus         2 ~~~-~l~~~~~~~~----~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   70 (214)
T cd03297           2 LCV-DIEKRLPDFT----L--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEK---PDGGTIVLNGTVLFDSRKKINL   70 (214)
T ss_pred             cee-eeeEecCCee----e--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEecccccchhhh
Confidence            344 8999998832    3  99999999 9999999999999999999999997   99999 5666321         


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhhhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia~a  222 (254)
                         ....++ +.++...+.  .+++.+++.+.....  ........+.++++.+++..  +..+..||+||+||+++|++
T Consensus        71 ~~~~~~i~~-~~q~~~~~~--~~t~~~~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~a  145 (214)
T cd03297          71 PPQQRKIGL-VFQQYALFP--HLNVRENLAFGLKRK--RNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARA  145 (214)
T ss_pred             hhHhhcEEE-EecCCccCC--CCCHHHHHHHHHhhC--CHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHH
Confidence               112443 455433222  257777776543221  11122345677888888763  56788999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|++||+||||++||+.+++.+.+++.+
T Consensus       146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~  176 (214)
T cd03297         146 LAAQPELLLLDEPFSALDRALRLQLLPELKQ  176 (214)
T ss_pred             HhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998853

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.7e-30  Score=234.77  Aligned_cols=158  Identities=15%  Similarity=0.137  Sum_probs=125.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      ||++ ||+|.|++..      .++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus         1 ~l~~-~l~k~~~~~~------~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~~~~~~~~~~   70 (352)
T PRK11144          1 MLEL-NFKQQLGDLC------LTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTR---PQKGRIVLNGRVLFDAEKGIC   70 (352)
T ss_pred             CeEE-EEEEEeCCEE------EEEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEccccccccc
Confidence            4777 9999998621      38999999999999999999999999999999997   99999 5665321        


Q ss_pred             ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                          ....++ +.++...++  .+++.+++.+...      ......+.++++.+++.  .+.++..||+||+||+++|+
T Consensus        71 ~~~~~~~i~~-v~q~~~l~~--~~tv~enl~~~~~------~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalar  141 (352)
T PRK11144         71 LPPEKRRIGY-VFQDARLFP--HYKVRGNLRYGMA------KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGR  141 (352)
T ss_pred             cchhhCCEEE-EcCCcccCC--CCcHHHHHHhhhh------hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHH
Confidence                123444 555443222  3688888765321      12345677888888876  46788899999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+.+|++|||||||++||+..++.+.++|.+
T Consensus       142 aL~~~p~llLLDEPts~LD~~~~~~l~~~L~~  173 (352)
T PRK11144        142 ALLTAPELLLMDEPLASLDLPRKRELLPYLER  173 (352)
T ss_pred             HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999988853

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=2.8e-30  Score=224.00  Aligned_cols=169  Identities=17%  Similarity=0.156  Sum_probs=129.2

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCC------CCC
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS------QVK  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~------~~~  147 (254)
                      .++++++++++.|++..    +++|+||++.+|++++|+|+||||||||+++|+|++.   |++|+ .++|      ...
T Consensus         8 ~~~i~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~---~~~G~v~~~G~~~~~g~~~   80 (257)
T PRK14246          8 EDVFNISRLYLYINDKA----ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE---IYDSKIKVDGKVLYFGKDI   80 (257)
T ss_pred             hhheeeeeEEEecCCce----eEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCcCceeEcCEEEECCccc
Confidence            46899999999998743    6699999999999999999999999999999999997   89876 3333      211


Q ss_pred             --------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC------CCCCCCCCChh
Q 025366          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (254)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G  212 (254)
                              ....++ +.++...++  .+++.+++.+.....+.. .......+.++++.+++.      .+..+..||+|
T Consensus        81 ~~~~~~~~~~~i~~-~~q~~~~~~--~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G  157 (257)
T PRK14246         81 FQIDAIKLRKEVGM-VFQQPNPFP--HLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGG  157 (257)
T ss_pred             ccCCHHHHhcceEE-EccCCccCC--CCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHH
Confidence                    122344 555543322  257888876653332321 112224456777877774      24577899999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+++|++++.+|+++|+||||++||..+++.+.++|.+
T Consensus       158 ~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~  198 (257)
T PRK14246        158 QQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITE  198 (257)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998864

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.97  E-value=2.3e-30  Score=245.70  Aligned_cols=174  Identities=16%  Similarity=0.192  Sum_probs=130.3

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCCC-
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVKP-  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~~-  148 (254)
                      ++++++||++.|++......+++++||++++||+++|+||||||||||+|+|+|+++   |     ++|+ .++|.... 
T Consensus         4 ~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~---~~~~~~~~G~i~~~g~~i~~   80 (529)
T PRK15134          4 PLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLP---SPPVVYPSGDIRFHGESLLH   80 (529)
T ss_pred             ceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC---CCcCCccceEEEECCEeccc
Confidence            579999999999631111126799999999999999999999999999999999996   4     7899 56663210 


Q ss_pred             -----------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCCCCCccHHHHHHHHHhhccCC-----CCCCCCCCh
Q 025366          149 -----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQG-----SVYAPSFDH  211 (254)
Q Consensus       149 -----------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~~-----~~~~~~lS~  211 (254)
                                 ...|+ +.++......+.+++.++....... .+.........+.++++.+++..     +.++.+|||
T Consensus        81 ~~~~~~~~~~~~~ig~-v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg  159 (529)
T PRK15134         81 ASEQTLRGVRGNKIAM-IFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG  159 (529)
T ss_pred             CCHHHHHHHhcCceEE-EecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence                       23454 5665421111224566655433221 23332223456778888888853     668899999


Q ss_pred             hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+||++||+||+.+|++|||||||++||+..++.+.+++.+
T Consensus       160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~  201 (529)
T PRK15134        160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRE  201 (529)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998854

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.9e-30  Score=226.89  Aligned_cols=170  Identities=15%  Similarity=0.062  Sum_probs=123.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----C-CC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----P-PD  150 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~-~~  150 (254)
                      +++++||++.|++. +.  +++|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...    . ..
T Consensus         6 ~l~~~~l~~~~~~~-~~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~~   79 (272)
T PRK15056          6 GIVVNDVTVTWRNG-HT--ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVR---LASGKISILGQPTRQALQKNL   79 (272)
T ss_pred             eEEEEeEEEEecCC-cE--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEEhHHhhccce
Confidence            58999999999631 22  5699999999999999999999999999999999997   99999 5666422    1 12


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHH-HHcCC---CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~-~~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                      .++ +.++.........++.+++.... ...+.   ..........++++.+++.  .+.++..||+||+||+++|+|++
T Consensus        80 i~~-v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~  158 (272)
T PRK15056         80 VAY-VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIA  158 (272)
T ss_pred             EEE-eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHh
Confidence            443 44443211110122333332110 00111   1111233456777877775  46778899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|++||+||||++||+.+++.+.++|.+
T Consensus       159 ~~p~llllDEPt~~LD~~~~~~l~~~L~~  187 (272)
T PRK15056        159 QQGQVILLDEPFTGVDVKTEARIISLLRE  187 (272)
T ss_pred             cCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998853

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.9e-30  Score=221.64  Aligned_cols=169  Identities=18%  Similarity=0.145  Sum_probs=125.7

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC---CCce-ecCCCCC----
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP---QKAS-SFDSQVK----  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p---~~G~-~~~~~~~----  147 (254)
                      ++++++||++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+.+. .|   ++|+ .++|...    
T Consensus         4 ~~l~~~~l~~~~~~~--~--~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~-~~~~~~~G~i~~~g~~~~~~~   78 (252)
T PRK14255          4 KIITSSDVHLFYGKF--E--ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDL-IPGVTITGNVSLRGQNIYAPN   78 (252)
T ss_pred             ceEEEEeEEEEECCe--e--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccc-CCCCCcccEEEEcCEEccccc
Confidence            469999999999863  3  56999999999999999999999999999999998620 03   5898 5666422    


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC-ccHHHHHHHHHhhccC------CCCCCCCCChhhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~  214 (254)
                            ....++ +.++... +.  .++.+++.+.....+.... .......+.++.+++.      .+..+..||+||+
T Consensus        79 ~~~~~~~~~i~~-~~q~~~~-~~--~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~  154 (252)
T PRK14255         79 EDVVQLRKQVGM-VFQQPNP-FP--FSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ  154 (252)
T ss_pred             ccHHHhcCeEEE-EECCCcc-CC--CcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHH
Confidence                  122444 5554332 22  4778887664433332211 1123445566666542      3567789999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  193 (252)
T PRK14255        155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLE  193 (252)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.9e-30  Score=222.92  Aligned_cols=168  Identities=17%  Similarity=0.164  Sum_probs=126.5

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-----Cce-ecCCCCC-
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-----KAS-SFDSQVK-  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~-----~G~-~~~~~~~-  147 (254)
                      .++|+++|+++.|++..    +++|+||++++|++++|+|+||||||||+++|+|+++   |+     .|+ .++|... 
T Consensus         5 ~~~l~~~nl~~~~~~~~----il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---~~g~i~~~G~i~~~g~~i~   77 (261)
T PRK14258          5 IPAIKVNNLSFYYDTQK----ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE---LESEVRVEGRVEFFNQNIY   77 (261)
T ss_pred             cceEEEeeEEEEeCCee----EeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCccccceEEECCEEhh
Confidence            45799999999998632    6699999999999999999999999999999999996   64     677 4555321 


Q ss_pred             ---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC------CCCCCCCCCh
Q 025366          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDH  211 (254)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~  211 (254)
                               ....++ +.++.. ++.  .++.+++.+.....+. +.......+.++++.+++.      .+..+..||+
T Consensus        78 ~~~~~~~~~~~~i~~-~~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSg  153 (261)
T PRK14258         78 ERRVNLNRLRRQVSM-VHPKPN-LFP--MSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSG  153 (261)
T ss_pred             ccccchHHhhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCH
Confidence                     112333 444433 222  5777877654333332 1111234456777777663      3566789999


Q ss_pred             hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+||+++|++++.+|++|||||||++||+..++.+.+++.+
T Consensus       154 Gq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~  195 (261)
T PRK14258        154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS  195 (261)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998864

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=4.3e-30  Score=226.17  Aligned_cols=172  Identities=13%  Similarity=0.146  Sum_probs=128.5

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC---
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK---  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~---  147 (254)
                      ..++|++++|++.|++.  .  +++|+||+|++|++++|+||||||||||+++|+|+..  ..+|++|+ .++|...   
T Consensus        36 ~~~~l~~~~l~~~~~~~--~--il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~  111 (286)
T PRK14275         36 GKPHVVAKNFSIYYGEF--E--AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK  111 (286)
T ss_pred             CceEEEEeeeEEEECCE--E--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhc
Confidence            35689999999999863  2  5699999999999999999999999999999999852  11148999 5666321   


Q ss_pred             -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhh
Q 025366          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (254)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~  213 (254)
                             ....++ +.++... +.  .++.+++.+.....+... ......+.++++.+++.      .+..+..||+||
T Consensus       112 ~~~~~~~~~~i~~-v~q~~~l-~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq  187 (286)
T PRK14275        112 FTDEVLLRKKIGM-VFQKPNP-FP--KSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ  187 (286)
T ss_pred             ccchHHhhhcEEE-ECCCCCC-Cc--cCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence                   112343 5555432 22  378888876543333321 11123455666666552      356778999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|++++.+|++|||||||++||+..++.+.+++.+
T Consensus       188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~  227 (286)
T PRK14275        188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE  227 (286)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998853

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.97  E-value=2.5e-30  Score=244.91  Aligned_cols=167  Identities=16%  Similarity=0.153  Sum_probs=128.3

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCce-ecC-----------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFD-----------  143 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll--~~~~p~~G~-~~~-----------  143 (254)
                      |+++|+++.|++.  .  +++++||++++|++++|+||||||||||+|+|+|++  +   |++|+ .++           
T Consensus         1 l~~~~l~~~~~~~--~--~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~---p~~G~i~~~~~~~~~~~~~~   73 (520)
T TIGR03269         1 IEVKNLTKKFDGK--E--VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYE---PTSGRIIYHVALCEKCGYVE   73 (520)
T ss_pred             CEEEEEEEEECCe--E--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCC---CCceEEEEeccccccccccc
Confidence            4789999999763  2  669999999999999999999999999999999996  5   89999 454           


Q ss_pred             ------------CCCC------------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHH
Q 025366          144 ------------SQVK------------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN  193 (254)
Q Consensus       144 ------------~~~~------------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~  193 (254)
                                  |...                  ....++ +.++...++. .+++.+++.+.....+........++.+
T Consensus        74 ~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~-v~q~~~~~~~-~~tv~~~l~~~~~~~~~~~~~~~~~~~~  151 (520)
T TIGR03269        74 RPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAI-MLQRTFALYG-DDTVLDNVLEALEEIGYEGKEAVGRAVD  151 (520)
T ss_pred             cccccccccccccccccccchhhhccCHHHHHHhhhcEEE-EeccccccCC-CCCHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence                        1100                  112344 5554222221 2578888876544444432223356778


Q ss_pred             HHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          194 CLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       194 ~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++.+++.  .+.++.+|||||+||+++|+||+.+|++|||||||++||+..++.+.+++.+
T Consensus       152 ~l~~~gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  213 (520)
T TIGR03269       152 LIEMVQLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEE  213 (520)
T ss_pred             HHHHcCChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHH
Confidence            88888885  3567899999999999999999999999999999999999999999888753

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.4e-30  Score=223.96  Aligned_cols=172  Identities=15%  Similarity=0.100  Sum_probs=127.8

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc--cCCCCce-ecCCCCC---
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK--IWPQKAS-SFDSQVK---  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~--~~p~~G~-~~~~~~~---  147 (254)
                      ..++++++|+++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+++.  ..|++|+ .++|...   
T Consensus        22 ~~~~l~~~nl~~~~~~~--~--il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~   97 (272)
T PRK14236         22 EQTALEVRNLNLFYGDK--Q--ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDK   97 (272)
T ss_pred             CCcEEEEEEEEEEECCe--e--EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccc
Confidence            34689999999999863  3  56999999999999999999999999999999999851  0137999 5666321   


Q ss_pred             -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhh
Q 025366          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGV  213 (254)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~  213 (254)
                             ....++ +.++.. ++.  .++.+++.+.....+... ......+.++++.+++.      .+..+..||+||
T Consensus        98 ~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq  173 (272)
T PRK14236         98 KVDVAELRRRVGM-VFQRPN-PFP--KSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQ  173 (272)
T ss_pred             ccCHHHHhccEEE-EecCCc-cCc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHH
Confidence                   122343 455433 222  377777765433333211 11123456667766663      346678999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|++++.+|++||+||||++||+.++..+.+++.+
T Consensus       174 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~  213 (272)
T PRK14236        174 QQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITE  213 (272)
T ss_pred             HHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=99.97  E-value=2.8e-30  Score=233.65  Aligned_cols=158  Identities=9%  Similarity=0.079  Sum_probs=123.7

Q ss_pred             cceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------------C
Q 025366           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------------P  148 (254)
Q Consensus        82 ~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------------~  148 (254)
                      ||++.|++.     .+ ++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...            .
T Consensus         4 ~l~~~~~~~-----~~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~---p~~G~I~~~g~~i~~~~~~~~~~~~~   74 (354)
T TIGR02142         4 RFSKRLGDF-----SL-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTR---PDEGEIVLNGRTLFDSRKGIFLPPEK   74 (354)
T ss_pred             EEEEEECCE-----EE-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECccCccccccchhh
Confidence            789999863     23 8999999999999999999999999999999997   99999 5666321            1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                      ...+. +.++...++  .+++.+++.+.....  ........+.++++.+++.  .+.++.+||+||+||+++|+||+.+
T Consensus        75 ~~i~~-v~q~~~l~~--~~tv~enl~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~  149 (354)
T TIGR02142        75 RRIGY-VFQEARLFP--HLSVRGNLRYGMKRA--RPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSS  149 (354)
T ss_pred             CCeEE-EecCCccCC--CCcHHHHHHHHhhcc--ChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcC
Confidence            22444 555433222  368888887643321  1112234567888888876  4677889999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++|||||||++||+..++.+.++|.+
T Consensus       150 p~lllLDEPts~LD~~~~~~l~~~L~~  176 (354)
T TIGR02142       150 PRLLLMDEPLAALDDPRKYEILPYLER  176 (354)
T ss_pred             CCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998864

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=99.97  E-value=2.3e-30  Score=226.31  Aligned_cols=167  Identities=15%  Similarity=0.090  Sum_probs=126.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC--------Cce-ecCCCCC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--------KAS-SFDSQVK  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~--------~G~-~~~~~~~  147 (254)
                      ||+++|+++.|++..    +++++||++++|++++|+||||||||||+++|+|+++   |+        +|+ .++|...
T Consensus         1 ml~~~nl~~~~~~~~----il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~---p~~~~~~~~~~G~i~~~g~~~   73 (272)
T PRK13547          1 MLTADHLHVARRHRA----ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLT---GGGAPRGARVTGDVTLNGEPL   73 (272)
T ss_pred             CeEEEEEEEEECCEe----EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CcccccccCCceEEEECCEEc
Confidence            488999999998633    5699999999999999999999999999999999997   77        898 5666422


Q ss_pred             C--------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc----CCCCCccHHHHHHHHHhhccC--CCCCCCCCChhh
Q 025366          148 P--------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV  213 (254)
Q Consensus       148 ~--------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~----g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~  213 (254)
                      .        ...++ +.++...++.  +++.+++.+.....    +...........++++.+++.  .+.++..||+||
T Consensus        74 ~~~~~~~~~~~~~~-v~q~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~  150 (272)
T PRK13547         74 AAIDAPRLARLRAV-LPQAAQPAFA--FSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGE  150 (272)
T ss_pred             ccCCHHHHHhhcEE-ecccCCCCCC--CcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHH
Confidence            1        11343 5555432222  57777765432111    111112234566788888775  456788999999


Q ss_pred             hhhHhhhhhhc---------CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~---------~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|++++         .+|++|||||||++||+..++.+.+++.+
T Consensus       151 ~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  199 (272)
T PRK13547        151 LARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRR  199 (272)
T ss_pred             HHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            99999999999         59999999999999999999999998853

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.8e-30  Score=244.84  Aligned_cols=169  Identities=16%  Similarity=0.156  Sum_probs=130.9

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      +++++++||++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus         2 ~~~l~~~~l~~~~~~~--~--il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~i~~~~~~   74 (501)
T PRK11288          2 SPYLSFDGIGKTFPGV--K--ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQ---PDAGSILIDGQEMRFASTT   74 (501)
T ss_pred             CceEEEeeeEEEECCE--E--EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEECCCCCHH
Confidence            3579999999999863  2  5699999999999999999999999999999999997   99999 5665322      


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH--HcCC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~--~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                         ....++ +.++...+.  .+++.+++.+...  ..+. ........+.++++.+++.  .+.++..|||||+||+++
T Consensus        75 ~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l  151 (501)
T PRK11288         75 AALAAGVAI-IYQELHLVP--EMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEI  151 (501)
T ss_pred             HHHhCCEEE-EEechhccC--CCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHH
Confidence               123454 555433222  2678887765321  1121 1112234567888888875  356788999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++++.+|++|||||||++||+..++.+.++|.+
T Consensus       152 aral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  185 (501)
T PRK11288        152 AKALARNARVIAFDEPTSSLSAREIEQLFRVIRE  185 (501)
T ss_pred             HHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998863

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.97  E-value=5.3e-30  Score=214.69  Aligned_cols=154  Identities=15%  Similarity=0.136  Sum_probs=114.4

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..+.++||++.|+.......+++++||++++|++++|+||||||||||+++|+|+++...|++|+ .++|...       
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~~~~   81 (202)
T cd03233           2 STLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFAEKY   81 (202)
T ss_pred             ceEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccchhhh
Confidence            35789999999976422233679999999999999999999999999999999998411146887 5555321       


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                      ....++ +.++...++  .+++.+++.+....                     ..+..+..||+||+||+++|+|++.+|
T Consensus        82 ~~~i~~-~~q~~~~~~--~~tv~~~l~~~~~~---------------------~~~~~~~~LS~Ge~qrl~laral~~~p  137 (202)
T cd03233          82 PGEIIY-VSEEDVHFP--TLTVRETLDFALRC---------------------KGNEFVRGISGGERKRVSIAEALVSRA  137 (202)
T ss_pred             cceEEE-EecccccCC--CCcHHHHHhhhhhh---------------------ccccchhhCCHHHHHHHHHHHHHhhCC
Confidence            112333 344332222  24666655432110                     045667899999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++||+||||++||+..++.+.+++.+
T Consensus       138 ~llllDEPt~~LD~~~~~~~~~~l~~  163 (202)
T cd03233         138 SVLCWDNSTRGLDSSTALEILKCIRT  163 (202)
T ss_pred             CEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999998864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=5.6e-30  Score=224.33  Aligned_cols=168  Identities=13%  Similarity=0.091  Sum_probs=125.6

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCC-
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (254)
                      .++|+++||++.|++.  .  +++|+||++++|++++|+|+||||||||+++|+|+++   |     ++|+ .++|... 
T Consensus        19 ~~~l~i~nl~~~~~~~--~--il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~   91 (276)
T PRK14271         19 APAMAAVNLTLGFAGK--T--VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMND---KVSGYRYSGDVLLGGRSIF   91 (276)
T ss_pred             CcEEEEeeEEEEECCE--E--EeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCC---cCCCCCCceEEEECCEEcc
Confidence            4589999999999863  3  5699999999999999999999999999999999985   5     6898 5666321 


Q ss_pred             --------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC------CCCCCCCCChh
Q 025366          148 --------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ------GSVYAPSFDHG  212 (254)
Q Consensus       148 --------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~------~~~~~~~lS~G  212 (254)
                              ....++ +.++.. ++.  .++.+++.+....... ..........++++.+++.      .+..+..||+|
T Consensus        92 ~~~~~~~~~~~i~~-v~q~~~-l~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgG  167 (276)
T PRK14271         92 NYRDVLEFRRRVGM-LFQRPN-PFP--MSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGG  167 (276)
T ss_pred             ccchhHHHhhheEE-eccCCc-cCC--ccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHH
Confidence                    112343 555433 222  4777777654322211 1111112345666777664      24567899999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+++|++++.+|++||+||||++||+.+++.+.+++.+
T Consensus       168 q~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~  208 (276)
T PRK14271        168 QQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRS  208 (276)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998864

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1e-29  Score=221.38  Aligned_cols=170  Identities=14%  Similarity=0.095  Sum_probs=127.0

Q ss_pred             CCcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCC
Q 025366           73 REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQV  146 (254)
Q Consensus        73 ~~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~  146 (254)
                      ....+|+++|+++.|++..    +++++||++++|++++|+|+||||||||+++|+|++.   |     ++|+ .++|..
T Consensus        12 ~~~~~l~~~~l~~~~~~~~----vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~~~~~sG~i~~~g~~   84 (265)
T PRK14252         12 PTQQKSEVNKLNFYYGGYQ----ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD---LYPGNHYEGEIILHPDN   84 (265)
T ss_pred             CCCceEEEEEEEEEECCee----eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccC---CCCCCCcccEEEEcCcc
Confidence            3456799999999998632    6699999999999999999999999999999999985   4     6898 566532


Q ss_pred             C------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCC
Q 025366          147 K------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAP  207 (254)
Q Consensus       147 ~------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~  207 (254)
                      .            ....++ +.++...+ .  .++.+++.+.....+... ........++++.+++.      .+..+.
T Consensus        85 ~~~~~~~~~~~~~~~~i~~-~~q~~~~~-~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~  160 (265)
T PRK14252         85 VNILSPEVDPIEVRMRISM-VFQKPNPF-P--KSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAF  160 (265)
T ss_pred             ccccccccCHHHHhccEEE-EccCCcCC-c--chHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcc
Confidence            1            112343 45443322 2  367777765433333221 11224455666666542      245678


Q ss_pred             CCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          208 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       208 ~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .||+||+||+++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       161 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~  206 (265)
T PRK14252        161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISD  206 (265)
T ss_pred             cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998863

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.97  E-value=1.4e-30  Score=209.18  Aligned_cols=169  Identities=16%  Similarity=0.197  Sum_probs=127.5

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCC
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPD  150 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~  150 (254)
                      ++.++++|+.|+||...    +|++||++.++|++|.|+|.|||||||++|||.-+.+   |+.|. .+.|+..   +..
T Consensus         4 ~~~l~v~dlHK~~G~~e----VLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~---P~~G~I~v~geei~~k~~~   76 (256)
T COG4598           4 ENALEVEDLHKRYGEHE----VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEK---PSAGSIRVNGEEIRLKRDK   76 (256)
T ss_pred             ccceehhHHHhhcccch----hhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcC---CCCceEEECCeEEEeeeCC
Confidence            56799999999999965    6799999999999999999999999999999999987   99999 5555321   111


Q ss_pred             eEEEee----------------CCCCCCCCcCCChhhcHHHH-HHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCCh
Q 025366          151 VATVLP----------------MDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDH  211 (254)
Q Consensus       151 ~g~~i~----------------~~~~~~~~~~l~~~e~~~~~-~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~  211 (254)
                      .|..+.                +..|.++.+ +++.+|.... ....|.+.....++...++..+++.  .+.|+..|||
T Consensus        77 ~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsH-mtvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSG  155 (256)
T COG4598          77 DGQLKPADKRQLQRLRTRLGMVFQHFNLWSH-MTVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSG  155 (256)
T ss_pred             CCCeeeCCHHHHHHHHHHhhHhhhhcchhHH-HHHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCc
Confidence            122222                222333322 4455544332 2234555555556666677777665  4678899999


Q ss_pred             hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      ||+||++|||||+.+|+++++||||+.|||+..-++.+.+
T Consensus       156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~  195 (256)
T COG4598         156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVM  195 (256)
T ss_pred             hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999888877765

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=99.97  E-value=7.9e-30  Score=222.83  Aligned_cols=170  Identities=13%  Similarity=0.114  Sum_probs=125.2

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC-----
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~-----  147 (254)
                      ++++++||++.|++..    +++++||++++|++++|+|+||||||||+++|+|+++  ...|++|+ .++|...     
T Consensus        23 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~   98 (271)
T PRK14238         23 VVFDTQNLNLWYGEDH----ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY   98 (271)
T ss_pred             eEEEEeeeEEEECCcc----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence            4799999999998633    6699999999999999999999999999999999984  11258999 5666322     


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC-ccHHHHHHHHHhhcc------CCCCCCCCCChhhhh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRN------QGSVYAPSFDHGVGD  215 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l------~~~~~~~~lS~G~~q  215 (254)
                           ....++ +.++... +.  .++.+++.+.....+.... .....+.+.++.+++      ..+..+..||+||+|
T Consensus        99 ~~~~~~~~i~~-v~q~~~~-~~--~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~q  174 (271)
T PRK14238         99 SVEELRTNVGM-VFQKPNP-FP--KSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQ  174 (271)
T ss_pred             cHHHHhhhEEE-EecCCcc-cc--ccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHH
Confidence                 122444 5555432 22  3777887654332232111 112223444544432      135677899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus       175 rv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  212 (271)
T PRK14238        175 RLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE  212 (271)
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998853

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=99.97  E-value=4.7e-30  Score=208.68  Aligned_cols=135  Identities=16%  Similarity=0.107  Sum_probs=107.2

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEee
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP  156 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~  156 (254)
                      ++++++++.|++. +.  +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .+++.   ...++ +.
T Consensus         1 i~~~~~~~~~~~~-~~--~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~~~---~~i~~-~~   70 (166)
T cd03223           1 IELENLSLATPDG-RV--LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWP---WGSGRIGMPEG---EDLLF-LP   70 (166)
T ss_pred             CEEEEEEEEcCCC-Ce--eeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCC---ceEEE-EC
Confidence            4688999999642 22  5699999999999999999999999999999999997   88998 45442   23343 44


Q ss_pred             CCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCC
Q 025366          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (254)
Q Consensus       157 ~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~  236 (254)
                      ++... +  ..++.+++.+                         .   .+..||+||+||+++|++++.+|+++|+||||
T Consensus        71 q~~~~-~--~~tv~~nl~~-------------------------~---~~~~LS~G~~~rv~laral~~~p~~lllDEPt  119 (166)
T cd03223          71 QRPYL-P--LGTLREQLIY-------------------------P---WDDVLSGGEQQRLAFARLLLHKPKFVFLDEAT  119 (166)
T ss_pred             CCCcc-c--cccHHHHhhc-------------------------c---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence            44321 1  1344444321                         0   46899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHhhc
Q 025366          237 LFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       237 ~~lD~~~~~~l~~ll~~  253 (254)
                      ++||+..++.+.+++.+
T Consensus       120 ~~LD~~~~~~l~~~l~~  136 (166)
T cd03223         120 SALDEESEDRLYQLLKE  136 (166)
T ss_pred             cccCHHHHHHHHHHHHH
Confidence            99999999999998864

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=99.97  E-value=1.2e-29  Score=219.18  Aligned_cols=170  Identities=17%  Similarity=0.140  Sum_probs=122.3

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCce-ecCCCCCC---
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQVKP---  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~-~~~~~~~~---  148 (254)
                      .+++++++|++.|++..    +++++||++++|++++|+|+||||||||+++|+|+  ++   |++|+ .++|....   
T Consensus         5 ~~~l~~~~l~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~   77 (252)
T CHL00131          5 KPILEIKNLHASVNENE----ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYK---ILEGDILFKGESILDLE   77 (252)
T ss_pred             CceEEEEeEEEEeCCEE----eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCc---CCCceEEECCEEcccCC
Confidence            34799999999998632    67999999999999999999999999999999997  34   89999 56663211   


Q ss_pred             ----CCeE-EEeeCCCCCCCCcCCChhhcHHHHHHHc----CCCC-C--ccHHHHHHHHHhhccC---CCCCCC-CCChh
Q 025366          149 ----PDVA-TVLPMDGFHLYLSQLDAMEDPKEAHARR----GAPW-T--FNPLLLLNCLKNLRNQ---GSVYAP-SFDHG  212 (254)
Q Consensus       149 ----~~~g-~~i~~~~~~~~~~~l~~~e~~~~~~~~~----g~~~-~--~~~~~~~~~l~~l~l~---~~~~~~-~lS~G  212 (254)
                          ...+ .++.++...+  +.++..++..+.....    +... .  .....+.++++.+++.   .+..+. .||+|
T Consensus        78 ~~~~~~~~~~~~~q~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG  155 (252)
T CHL00131         78 PEERAHLGIFLAFQYPIEI--PGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGG  155 (252)
T ss_pred             hhhhheeeEEEEecccccc--ccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHH
Confidence                1112 1233433222  1245555554322111    1111 0  0123456778887775   245555 59999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+++|+|++.+|+|||+||||++||+.+++.+.++|.+
T Consensus       156 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  196 (252)
T CHL00131        156 EKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINK  196 (252)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998864

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.97  E-value=3.2e-30  Score=242.56  Aligned_cols=162  Identities=10%  Similarity=-0.018  Sum_probs=121.7

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      .+|+++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++....      
T Consensus         2 ~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~---p~~G~i~~~~~~~~~~~~~~   74 (490)
T PRK10938          2 SSLQISQGTFRLSDTK----TLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELP---LLSGERQSQFSHITRLSFEQ   74 (490)
T ss_pred             ceEEEEeEEEEcCCee----ecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCceEEECCcccccCCHHH
Confidence            4799999999998633    6699999999999999999999999999999999997   99999 45553211      


Q ss_pred             --CCeEEEeeCCCCC-CCCc-----CCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHh
Q 025366          149 --PDVATVLPMDGFH-LYLS-----QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE  218 (254)
Q Consensus       149 --~~~g~~i~~~~~~-~~~~-----~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~  218 (254)
                        ...+. +.++... +...     .+++.++..       .. .....++.++++.+++.  .+.++.+|||||+||++
T Consensus        75 ~~~~i~~-~~q~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~  145 (490)
T PRK10938         75 LQKLVSD-EWQRNNTDMLSPGEDDTGRTTAEIIQ-------DE-VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTL  145 (490)
T ss_pred             HHHHhce-eccCcchhhcccchhhccccHHHhcc-------cc-hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHH
Confidence              11333 3332110 0000     122222211       01 11234567888888875  46788899999999999


Q ss_pred             hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|+|++.+|++|||||||++||+..++.+.++|.+
T Consensus       146 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  180 (490)
T PRK10938        146 LCQALMSEPDLLILDEPFDGLDVASRQQLAELLAS  180 (490)
T ss_pred             HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998864

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=99.97  E-value=4.7e-30  Score=209.96  Aligned_cols=138  Identities=21%  Similarity=0.252  Sum_probs=100.7

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEee
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP  156 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~  156 (254)
                      ++++++++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...         
T Consensus         1 l~~~~l~~~~~~~--~--~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~g~~~---------   64 (173)
T cd03230           1 IEVRNLSKRYGKK--T--ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLK---PDSGEIKVLGKDI---------   64 (173)
T ss_pred             CEEEEEEEEECCe--e--eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEc---------
Confidence            4688999999763  2  5699999999999999999999999999999999986   77776 3444211         


Q ss_pred             CCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCC
Q 025366          157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN  235 (254)
Q Consensus       157 ~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp  235 (254)
                            ..  ..     .......++ ++........++.+++.         ||+||+||+++|++++.+|++||+|||
T Consensus        65 ------~~--~~-----~~~~~~i~~~~q~~~~~~~~tv~~~~~---------LS~G~~qrv~laral~~~p~illlDEP  122 (173)
T cd03230          65 ------KK--EP-----EEVKRRIGYLPEEPSLYENLTVRENLK---------LSGGMKQRLALAQALLHDPELLILDEP  122 (173)
T ss_pred             ------cc--ch-----HhhhccEEEEecCCccccCCcHHHHhh---------cCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence                  00  00     000111121 22111111112333322         999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHhhc
Q 025366          236 YLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       236 ~~~lD~~~~~~l~~ll~~  253 (254)
                      |++||+..++.+.++|.+
T Consensus       123 t~~LD~~~~~~l~~~l~~  140 (173)
T cd03230         123 TSGLDPESRREFWELLRE  140 (173)
T ss_pred             ccCCCHHHHHHHHHHHHH
Confidence            999999999999998864

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=99.97  E-value=5.1e-30  Score=218.81  Aligned_cols=154  Identities=17%  Similarity=0.147  Sum_probs=117.6

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC----CCce-ecCCCCC------CCCeEEEeeCCCCCCCC
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP----QKAS-SFDSQVK------PPDVATVLPMDGFHLYL  164 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p----~~G~-~~~~~~~------~~~~g~~i~~~~~~~~~  164 (254)
                      +++|+||++++|++++|+||||||||||+++|+|+++   |    ++|+ .++|...      ....++ +.++......
T Consensus         1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~G~i~~~g~~~~~~~~~~~~i~~-~~q~~~~~~~   76 (230)
T TIGR02770         1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLP---PGLTQTSGEILLDGRPLLPLSIRGRHIAT-IMQNPRTAFN   76 (230)
T ss_pred             CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CccCccccEEEECCEechhhhhhhheeEE-EecCchhhcC
Confidence            4689999999999999999999999999999999997   7    8999 5666432      123444 5555421222


Q ss_pred             cCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-----CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCC
Q 025366          165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  239 (254)
Q Consensus       165 ~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~l  239 (254)
                      ..+++.++..+.....+.........+.++++.+++.     .+..+..||+||+||+++|++++.+|+||||||||++|
T Consensus        77 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~L  156 (230)
T TIGR02770        77 PLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDL  156 (230)
T ss_pred             cccCHHHHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccc
Confidence            2356666665433333332222344577888888876     35677899999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhhc
Q 025366          240 DGGVWKDVSSMFDE  253 (254)
Q Consensus       240 D~~~~~~l~~ll~~  253 (254)
                      |...+..+.+++.+
T Consensus       157 D~~~~~~l~~~l~~  170 (230)
T TIGR02770       157 DVVNQARVLKLLRE  170 (230)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988764

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.97  E-value=8e-30  Score=210.19  Aligned_cols=136  Identities=22%  Similarity=0.280  Sum_probs=101.2

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++++++|+++.|        +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|....      
T Consensus         3 ~~l~~~~l~~~~--------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~   71 (182)
T cd03215           3 PVLEVRGLSVKG--------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRP---PASGEITLDGKPVTRRSPRD   71 (182)
T ss_pred             cEEEEeccEEEe--------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCccCHHH
Confidence            469999999998        4599999999999999999999999999999999996   78877 44442110      


Q ss_pred             ---CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhc
Q 025366          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       149 ---~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                         ...++ +.++.. ......+++.+                         ++.+...     ||+||+||+++|+|++
T Consensus        72 ~~~~~i~~-~~q~~~~~~~~~~~t~~e-------------------------~l~~~~~-----LS~G~~qrl~la~al~  120 (182)
T cd03215          72 AIRAGIAY-VPEDRKREGLVLDLSVAE-------------------------NIALSSL-----LSGGNQQKVVLARWLA  120 (182)
T ss_pred             HHhCCeEE-ecCCcccCcccCCCcHHH-------------------------HHHHHhh-----cCHHHHHHHHHHHHHc
Confidence               11222 222210 00001122322                         2222111     9999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|++||+|||+++||+..++.+.+++.+
T Consensus       121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~  149 (182)
T cd03215         121 RDPRVLILDEPTRGVDVGAKAEIYRLIRE  149 (182)
T ss_pred             cCCCEEEECCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998853

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.3e-29  Score=220.44  Aligned_cols=167  Identities=14%  Similarity=0.084  Sum_probs=129.2

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-----CCce-ecCCCCC-
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-----QKAS-SFDSQVK-  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-----~~G~-~~~~~~~-  147 (254)
                      .+.+.++++++.|++..    +++++||++++|++++|+|+||||||||+++|+|+++   |     ++|+ .++|... 
T Consensus         6 ~~~~~~~~~~~~~~~~~----~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~~~~~~G~i~~~g~~i~   78 (261)
T PRK14263          6 PIVMDCKLDKIFYGNFM----AVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMND---LVKGFRFEGHVHFLGQDVY   78 (261)
T ss_pred             CceEEEEeEEEEeCCEE----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccc---cccCCCCceEEEECCEecc
Confidence            45789999999998733    6699999999999999999999999999999999986   5     6898 5666422 


Q ss_pred             ---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC------CCCCCCCChh
Q 025366          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG------SVYAPSFDHG  212 (254)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~------~~~~~~lS~G  212 (254)
                               ....++ +.++...+ .  +++.+++.+.....+. .......+.++++.+++..      +.++..||+|
T Consensus        79 ~~~~~~~~~~~~i~~-v~q~~~~~-~--~tv~enl~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G  153 (261)
T PRK14263         79 GKGVDPVVVRRYIGM-VFQQPNPF-S--MSIFDNVAFGLRLNRY-KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGG  153 (261)
T ss_pred             ccccchHhhhhceEE-EecCCccc-c--ccHHHHHHHHHhhcCc-hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHH
Confidence                     112344 55554332 2  6888888665433322 1122345677788777642      3456789999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+++|+|++.+|++||+||||++||+..+.++.++|.+
T Consensus       154 ~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~  194 (261)
T PRK14263        154 QQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVE  194 (261)
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999864

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=99.97  E-value=7.6e-30  Score=212.47  Aligned_cols=144  Identities=17%  Similarity=0.140  Sum_probs=108.3

Q ss_pred             eEEEecceeeccccc--ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCce-ecCCCCCC---
Q 025366           77 VVEARCMDEVYDALA--QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP---  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~--~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll--~~~~p~~G~-~~~~~~~~---  148 (254)
                      .+++++|++.|++..  ....+++++||++++|++++|+||||||||||+++|+|++  +   |++|+ .++|....   
T Consensus         3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~---~~~G~i~~~g~~~~~~~   79 (194)
T cd03213           3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGL---GVSGEVLINGRPLDKRS   79 (194)
T ss_pred             EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEeCchHh
Confidence            478999999997520  0112679999999999999999999999999999999998  7   88998 56654321   


Q ss_pred             --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                        ...++ +.++...+.  .+++.+++.+...                   +        ..||+||+||+++|+|++.+
T Consensus        80 ~~~~i~~-~~q~~~~~~--~~t~~~~i~~~~~-------------------~--------~~LS~G~~qrv~laral~~~  129 (194)
T cd03213          80 FRKIIGY-VPQDDILHP--TLTVRETLMFAAK-------------------L--------RGLSGGERKRVSIALELVSN  129 (194)
T ss_pred             hhheEEE-ccCcccCCC--CCcHHHHHHHHHH-------------------h--------ccCCHHHHHHHHHHHHHHcC
Confidence              12232 333322111  1344444432110                   0        18999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++||+||||++||+..++.+.+++.+
T Consensus       130 p~illlDEP~~~LD~~~~~~l~~~l~~  156 (194)
T cd03213         130 PSLLFLDEPTSGLDSSSALQVMSLLRR  156 (194)
T ss_pred             CCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            999999999999999999999998864

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=99.97  E-value=1.6e-30  Score=213.61  Aligned_cols=143  Identities=22%  Similarity=0.291  Sum_probs=101.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEee
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP  156 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~  156 (254)
                      ++++|+++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|            
T Consensus         1 i~~~~l~~~~~~~--~--~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g------------   61 (178)
T cd03229           1 LELKNVSKRYGQK--T--VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEE---PDSGSILIDG------------   61 (178)
T ss_pred             CEEEEEEEEECCe--E--EEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECC------------
Confidence            4688999999863  3  5699999999999999999999999999999999986   66666 3333            


Q ss_pred             CCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCC
Q 025366          157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN  235 (254)
Q Consensus       157 ~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp  235 (254)
                         ..+..  .+  +.........++ ++........++.+++.+.       ||+||+||+++|++++.+|+++|+|||
T Consensus        62 ---~~~~~--~~--~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~-------lS~G~~qr~~la~al~~~p~llilDEP  127 (178)
T cd03229          62 ---EDLTD--LE--DELPPLRRRIGMVFQDFALFPHLTVLENIALG-------LSGGQQQRVALARALAMDPDVLLLDEP  127 (178)
T ss_pred             ---EEccc--cc--hhHHHHhhcEEEEecCCccCCCCCHHHheeec-------CCHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence               21110  00  000011111221 2211111112334443332       999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHhhc
Q 025366          236 YLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       236 ~~~lD~~~~~~l~~ll~~  253 (254)
                      |++||+.++..+.+++.+
T Consensus       128 ~~~LD~~~~~~l~~~l~~  145 (178)
T cd03229         128 TSALDPITRREVRALLKS  145 (178)
T ss_pred             cccCCHHHHHHHHHHHHH
Confidence            999999999999998853

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=99.97  E-value=7.8e-30  Score=241.54  Aligned_cols=171  Identities=18%  Similarity=0.215  Sum_probs=129.9

Q ss_pred             cceEEEecceeecccc-cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecC-CCC----C
Q 025366           75 IPVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-SQV----K  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~-~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~-~~~----~  147 (254)
                      .++++++||++.|++. .....+++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .++ +..    .
T Consensus       277 ~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~g~~~~~~~  353 (520)
T TIGR03269       277 EPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLE---PTSGEVNVRVGDEWVDMT  353 (520)
T ss_pred             CceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEEecCCcccccc
Confidence            3579999999999531 011125699999999999999999999999999999999997   99999 553 321    0


Q ss_pred             ----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC-------CCCCCCCC
Q 025366          148 ----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------SVYAPSFD  210 (254)
Q Consensus       148 ----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-------~~~~~~lS  210 (254)
                                ....++ +.++... + +.+++.+++.+... .+.+.......+.++++.+++..       +.++.+||
T Consensus       354 ~~~~~~~~~~~~~i~~-v~q~~~l-~-~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS  429 (520)
T TIGR03269       354 KPGPDGRGRAKRYIGI-LHQEYDL-Y-PHRTVLDNLTEAIG-LELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELS  429 (520)
T ss_pred             ccchhhHHHHhhhEEE-EccCccc-C-CCCcHHHHHHHHHH-cCCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCC
Confidence                      112454 5555332 2 23688888765322 12222112345677888888853       57888999


Q ss_pred             hhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       211 ~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |||+||+++|+||+.+|++||+||||++||+..++.+.++|.
T Consensus       430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~  471 (520)
T TIGR03269       430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL  471 (520)
T ss_pred             HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999884

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=99.97  E-value=5.2e-30  Score=217.05  Aligned_cols=161  Identities=14%  Similarity=0.125  Sum_probs=118.7

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (254)
                      ++++|+++.|++...  .+++|+||++++|++++|+||||||||||+++|+|+.+   |++|+ .++|...        .
T Consensus         3 l~~~~l~~~~~~~~~--~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   77 (220)
T cd03245           3 IEFRNVSFSYPNQEI--PALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYK---PTSGSVLLDGTDIRQLDPADLR   77 (220)
T ss_pred             EEEEEEEEEcCCCCc--ccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCeEEECCEEhHHCCHHHHH
Confidence            789999999975211  26799999999999999999999999999999999997   99999 5666422        1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--C-----------CCCCCCChhhhh
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--S-----------VYAPSFDHGVGD  215 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~-----------~~~~~lS~G~~q  215 (254)
                      ...++ +.++... +.  .++.+++.+.     .. ......+.++++.+++..  +           ..+..||+||+|
T Consensus        78 ~~i~~-~~q~~~~-~~--~tv~e~l~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~q  147 (220)
T cd03245          78 RNIGY-VPQDVTL-FY--GTLRDNITLG-----AP-LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQ  147 (220)
T ss_pred             hhEEE-eCCCCcc-cc--chHHHHhhcC-----CC-CCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHH
Confidence            12343 4554432 22  3555554321     11 112234445555555431  1           134699999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus       148 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  185 (220)
T cd03245         148 AVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQ  185 (220)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.97  E-value=5.5e-30  Score=241.54  Aligned_cols=167  Identities=16%  Similarity=0.163  Sum_probs=127.8

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--CCce-ecCCCCC------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--QKAS-SFDSQVK------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p--~~G~-~~~~~~~------  147 (254)
                      +++++||++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |  ++|+ .++|...      
T Consensus         1 ~l~i~~l~~~~~~~--~--il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~---~~~~~G~i~~~g~~~~~~~~~   73 (500)
T TIGR02633         1 LLEMKGIVKTFGGV--K--ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYP---HGTWDGEIYWSGSPLKASNIR   73 (500)
T ss_pred             CEEEEeEEEEeCCe--E--eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCCCeEEEECCEECCCCCHH
Confidence            47899999999863  2  5699999999999999999999999999999999985   5  7999 5666322      


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc--C--CCCCccHHHHHHHHHhhccCC---CCCCCCCChhhhhhH
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR--G--APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV  217 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~--g--~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv  217 (254)
                         ....++ +.++...+.  .+++.+++.+.....  +  .........+.++++.+++..   +.++.+|||||+||+
T Consensus        74 ~~~~~~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv  150 (500)
T TIGR02633        74 DTERAGIVI-IHQELTLVP--ELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLV  150 (500)
T ss_pred             HHHhCCEEE-EeeccccCC--CCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHH
Confidence               123454 555543222  367888775532211  1  111112345677888888753   356789999999999


Q ss_pred             hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|+||+.+|++|||||||++||+..++.+.++|.+
T Consensus       151 ~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  186 (500)
T TIGR02633       151 EIAKALNKQARLLILDEPSSSLTEKETEILLDIIRD  186 (500)
T ss_pred             HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998754

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=99.97  E-value=2.7e-30  Score=219.70  Aligned_cols=171  Identities=15%  Similarity=0.119  Sum_probs=122.8

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (254)
                      ..++++++++++.|++... ..+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...     
T Consensus         8 ~~~~l~~~~l~~~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~   83 (226)
T cd03248           8 LKGIVKFQNVTFAYPTRPD-TLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ---PQGGQVLLDGKPISQYEH   83 (226)
T ss_pred             cCceEEEEEEEEEeCCCCC-CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCcEEEECCCchHHcCH
Confidence            4568999999999975211 126799999999999999999999999999999999997   99999 5666422     


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCcc----HHHHHHHHHhh--ccC--CCCCCCCCChhhhhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN----PLLLLNCLKNL--RNQ--GSVYAPSFDHGVGDP  216 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~----~~~~~~~l~~l--~l~--~~~~~~~lS~G~~qr  216 (254)
                         ....++ +.++... +.  .++.+++.+....... ....    ...+.+.++.+  ++.  .+.++.+||+||+||
T Consensus        84 ~~~~~~i~~-~~q~~~l-~~--~tv~~nl~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qr  158 (226)
T cd03248          84 KYLHSKVSL-VGQEPVL-FA--RSLQDNIAYGLQSCSF-ECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQR  158 (226)
T ss_pred             HHHHhhEEE-EecccHH-Hh--hhHHHHhccccCCCCH-HHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHH
Confidence               122444 4544332 21  3555555331110000 0000    00123455555  333  355678999999999


Q ss_pred             HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus       159 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  195 (226)
T cd03248         159 VAIARALIRNPQVLILDEATSALDAESEQQVQQALYD  195 (226)
T ss_pred             HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998864

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=99.97  E-value=6e-30  Score=242.78  Aligned_cols=174  Identities=15%  Similarity=0.198  Sum_probs=131.3

Q ss_pred             cceEEEecceeeccccc-------ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC
Q 025366           75 IPVVEARCMDEVYDALA-------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV  146 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~-------~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~  146 (254)
                      .++++++||++.|+...       ....+++++||++++|++++|+||||||||||+|+|+|++    |++|+ .++|..
T Consensus       273 ~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~----~~~G~i~~~g~~  348 (529)
T PRK15134        273 SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI----NSQGEIWFDGQP  348 (529)
T ss_pred             CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC----CCCcEEEECCEE
Confidence            35799999999996210       0112679999999999999999999999999999999998    78999 566632


Q ss_pred             C-----------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC--CCCCccHHHHHHHHHhhccC---CCCCCCCCC
Q 025366          147 K-----------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQ---GSVYAPSFD  210 (254)
Q Consensus       147 ~-----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g--~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS  210 (254)
                      .           ....++ +.++......+.+++.+++.+.....+  .........+.++++.+++.   .+.++.+||
T Consensus       349 i~~~~~~~~~~~~~~i~~-v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS  427 (529)
T PRK15134        349 LHNLNRRQLLPVRHRIQV-VFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFS  427 (529)
T ss_pred             ccccchhhHHHhhhceEE-EEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCC
Confidence            1           123454 566532111223688888866432221  22222234567888888885   367889999


Q ss_pred             hhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       211 ~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||+||+++|++++.+|++|||||||++||+..++.+.++|.+
T Consensus       428 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~  470 (529)
T PRK15134        428 GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKS  470 (529)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998863

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.97  E-value=1.2e-29  Score=219.18  Aligned_cols=168  Identities=12%  Similarity=0.079  Sum_probs=124.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc--ccCCCCce-ecCCCCC-------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN--KIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~--~~~p~~G~-~~~~~~~-------  147 (254)
                      -+++||++.|++..    +++++||++++|++++|+|+||||||||+++|+|+..  ...|+.|+ .++|...       
T Consensus         6 ~~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~   81 (251)
T PRK14244          6 ASVKNLNLWYGSKQ----ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNV   81 (251)
T ss_pred             EEeeeEEEEECCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccch
Confidence            46889999997632    5699999999999999999999999999999999973  11146899 5666321       


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC--ccHHHHHHHHHhhccCC------CCCCCCCChhhhhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQG------SVYAPSFDHGVGDP  216 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~--~~~~~~~~~l~~l~l~~------~~~~~~lS~G~~qr  216 (254)
                         ....++ +.++...+.   .++.+++.+.....+....  .....+.++++.+++..      +..+..||+||+||
T Consensus        82 ~~~~~~i~~-v~q~~~~~~---~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr  157 (251)
T PRK14244         82 VLLRAKVGM-VFQKPNPFP---KSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR  157 (251)
T ss_pred             HHHhhhEEE-EecCccccc---CCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence               112344 555543222   2677777654322232111  12234567788887742      35678999999999


Q ss_pred             HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++|++++.+|++||+||||++||+.+++.+.++|.+
T Consensus       158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~  194 (251)
T PRK14244        158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE  194 (251)
T ss_pred             HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998864

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=99.97  E-value=1.8e-30  Score=222.34  Aligned_cols=161  Identities=14%  Similarity=0.140  Sum_probs=117.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (254)
                      ++++|+++.|++....  +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...        .
T Consensus         1 i~~~~l~~~~~~~~~~--~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~~~   75 (237)
T cd03252           1 ITFEHVRFRYKPDGPV--ILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYV---PENGRVLVDGHDLALADPAWLR   75 (237)
T ss_pred             CEEEEEEEecCCCCcc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCeehHhcCHHHHh
Confidence            4688999999742222  6699999999999999999999999999999999997   99999 6666432        1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHH---------HHHHHhh--ccC--CCCCCCCCChhhhh
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNL--RNQ--GSVYAPSFDHGVGD  215 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~---------~~~l~~l--~l~--~~~~~~~lS~G~~q  215 (254)
                      ...++ +.++... +.  .++.+++.+..  .+    .....+         .+.++.+  ++.  .+.++.+||+||+|
T Consensus        76 ~~i~~-~~q~~~~-~~--~tv~~nl~~~~--~~----~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~q  145 (237)
T cd03252          76 RQVGV-VLQENVL-FN--RSIRDNIALAD--PG----MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQ  145 (237)
T ss_pred             hcEEE-EcCCchh-cc--chHHHHhhccC--CC----CCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHH
Confidence            22444 5555432 22  46666654311  01    111111         2223333  111  24567899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus       146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  183 (237)
T cd03252         146 RIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHD  183 (237)
T ss_pred             HHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=99.97  E-value=8.8e-30  Score=215.80  Aligned_cols=160  Identities=14%  Similarity=0.136  Sum_probs=119.5

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (254)
                      ++++|+++.|+...+.  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...        .
T Consensus         3 l~~~~l~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~~   77 (221)
T cd03244           3 IEFKNVSLRYRPNLPP--VLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE---LSSGSILIDGVDISKIGLHDLR   77 (221)
T ss_pred             EEEEEEEEecCCCCcc--cccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCEEEECCEEhHhCCHHHHh
Confidence            6899999999753222  5699999999999999999999999999999999997   99999 5666321        1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhhhh
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGD  215 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~q  215 (254)
                      ...++ +.++.. ++.  .++.+++...       .......+.+.++.+++.             ...++..||+||+|
T Consensus        78 ~~i~~-~~q~~~-l~~--~tv~enl~~~-------~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~q  146 (221)
T cd03244          78 SRISI-IPQDPV-LFS--GTIRSNLDPF-------GEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQ  146 (221)
T ss_pred             hhEEE-ECCCCc-ccc--chHHHHhCcC-------CCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHH
Confidence            23443 555543 222  3555554321       111233344444444332             13467899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus       147 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~  184 (221)
T cd03244         147 LLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE  184 (221)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=99.96  E-value=2.2e-29  Score=214.27  Aligned_cols=174  Identities=17%  Similarity=0.119  Sum_probs=126.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CCC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD  150 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~~  150 (254)
                      .+.++||+++|.+......+++|+||++++|++++|+||||||||||+++|+|+++.-.|++|+ .++|...     ...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~~~~~~~   82 (226)
T cd03234           3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKC   82 (226)
T ss_pred             cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECChHHhccc
Confidence            4678999999965310123679999999999999999999999999999999998311148898 5666422     223


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC---CCccHHHHHH-HHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP---WTFNPLLLLN-CLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~---~~~~~~~~~~-~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                      .++ +.++...+.  .+++.+++.+........   .......... .++.+++.  .+..+..||+||+||+++|++++
T Consensus        83 i~~-~~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~  159 (226)
T cd03234          83 VAY-VRQDDILLP--GLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLL  159 (226)
T ss_pred             EEE-eCCCCccCc--CCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHH
Confidence            443 555443222  368888887654322211   1111122333 66666665  35677899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|+++|+||||++||+.++..+.+++.+
T Consensus       160 ~~p~illlDEP~~gLD~~~~~~~~~~l~~  188 (226)
T cd03234         160 WDPKVLILDEPTSGLDSFTALNLVSTLSQ  188 (226)
T ss_pred             hCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998864

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=99.96  E-value=7.2e-30  Score=201.92  Aligned_cols=166  Identities=19%  Similarity=0.201  Sum_probs=137.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------  147 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---------  147 (254)
                      |+++++++.||...    +|.|++|+-++|+.+.|+||+|+|||||+|.|.-+.-   |.+|+ .+-++..         
T Consensus         3 irv~~in~~yg~~q----~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~---p~sg~l~ia~~~fd~s~~~~~k   75 (242)
T COG4161           3 IQLNGINCFYGAHQ----ALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEM---PRSGTLNIAGNHFDFSKTPSDK   75 (242)
T ss_pred             eEEcccccccccch----heeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhC---CCCCeEEecccccccccCccHH
Confidence            78999999999966    7899999999999999999999999999999998886   99999 3333211         


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHH-HHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                           +.+.|- +. ..|+++.+ +++.+|+.... +..|+++.....+..++++.+.+.  .+.++-.|||||+|||+|
T Consensus        76 ~i~~lr~~vgm-vf-qqy~lwph-ltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvai  152 (242)
T COG4161          76 AIRDLRRNVGM-VF-QQYNLWPH-LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAI  152 (242)
T ss_pred             HHHHHHHhhhh-hh-hhhccCch-hHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHH
Confidence                 234453 33 33455443 78888875544 457777777778889999998886  678888999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||+.+|++|++||||+.|||+...++.++|+|
T Consensus       153 aralmmkpqvllfdeptaaldpeitaqvv~iike  186 (242)
T COG4161         153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIKE  186 (242)
T ss_pred             HHHHhcCCcEEeecCcccccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998875

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=99.96  E-value=5.9e-30  Score=210.21  Aligned_cols=142  Identities=18%  Similarity=0.194  Sum_probs=105.0

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (254)
                      ++++++++.|++....  +++++||++++|++++|+||||||||||+++|+|+++   |++|+              +.+
T Consensus         1 i~~~~~~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~--------------i~~   61 (178)
T cd03247           1 LSINNVSFSYPEQEQQ--VLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLK---PQQGE--------------ITL   61 (178)
T ss_pred             CEEEEEEEEeCCCCcc--ceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCE--------------EEE
Confidence            4688999999763112  5699999999999999999999999999999999985   66664              333


Q ss_pred             CCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCC
Q 025366          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (254)
Q Consensus       158 ~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~  236 (254)
                      +|..+.     ..  ........++ ++...... .++.+++       +..||+||+||+++|++++.+|++||+||||
T Consensus        62 ~g~~~~-----~~--~~~~~~~i~~~~q~~~~~~-~tv~~~i-------~~~LS~G~~qrv~laral~~~p~~lllDEP~  126 (178)
T cd03247          62 DGVPVS-----DL--EKALSSLISVLNQRPYLFD-TTLRNNL-------GRRFSGGERQRLALARILLQDAPIVLLDEPT  126 (178)
T ss_pred             CCEEHH-----HH--HHHHHhhEEEEccCCeeec-ccHHHhh-------cccCCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            332110     00  0111222332 33222211 2444444       7899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHhhc
Q 025366          237 LFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       237 ~~lD~~~~~~l~~ll~~  253 (254)
                      ++||+..++.+.+++.+
T Consensus       127 ~~LD~~~~~~l~~~l~~  143 (178)
T cd03247         127 VGLDPITERQLLSLIFE  143 (178)
T ss_pred             ccCCHHHHHHHHHHHHH
Confidence            99999999999998864

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=2.1e-29  Score=240.27  Aligned_cols=166  Identities=16%  Similarity=0.072  Sum_probs=127.8

Q ss_pred             cceEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeE
Q 025366           75 IPVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA  152 (254)
Q Consensus        75 ~~~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g  152 (254)
                      +++|+++||++.|+ +.  .  +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+.+.   ...|
T Consensus         4 ~~~l~i~~l~~~y~~~~--~--il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~---p~~G~i~~~~~---~~i~   73 (556)
T PRK11819          4 QYIYTMNRVSKVVPPKK--Q--ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFEGEARPAPG---IKVG   73 (556)
T ss_pred             cEEEEEeeEEEEeCCCC--e--eeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEE
Confidence            35899999999998 53  2  6699999999999999999999999999999999997   99999 44432   2355


Q ss_pred             EEeeCCCCCCCCcCCChhhcHHHHHHH--------------cCCCCC---------------------c-cHHHHHHHHH
Q 025366          153 TVLPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWT---------------------F-NPLLLLNCLK  196 (254)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~e~~~~~~~~--------------~g~~~~---------------------~-~~~~~~~~l~  196 (254)
                      + +.++.....  .+++.+++.+....              .+....                     + ....+.++++
T Consensus        74 ~-v~Q~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  150 (556)
T PRK11819         74 Y-LPQEPQLDP--EKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMD  150 (556)
T ss_pred             E-EecCCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHH
Confidence            4 566543222  36888887653210              011100                     0 1234566777


Q ss_pred             hhccC-CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          197 NLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       197 ~l~l~-~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+++. .+.++.+|||||+||+++|++++.+|++|||||||++||+.++..+.++|.+
T Consensus       151 ~~gl~~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~  208 (556)
T PRK11819        151 ALRCPPWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHD  208 (556)
T ss_pred             hCCCCcccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHh
Confidence            77764 4667889999999999999999999999999999999999999999998864

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.4e-29  Score=217.13  Aligned_cols=170  Identities=14%  Similarity=0.131  Sum_probs=126.0

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC-----
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK-----  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~-----  147 (254)
                      -+++++||++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|++...  .|++|+ .++|...     
T Consensus         2 ~~l~~~~v~~~~~~~--~--~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~   77 (250)
T PRK14266          2 YRIEVENLNTYFDDA--H--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV   77 (250)
T ss_pred             cEEEEEeEEEEeCCe--E--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc
Confidence            468999999999863  2  569999999999999999999999999999999986311  138899 5666432     


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC-CccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW-TFNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~-~~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (254)
                           ....++ +.++... +.  .++.+++.+.....+... ......+.+.++.+++.      .+..+..||+||+|
T Consensus        78 ~~~~~~~~i~~-~~q~~~~-~~--~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q  153 (250)
T PRK14266         78 DVVELRKKVGM-VFQKPNP-FP--KSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ  153 (250)
T ss_pred             cHHHHhhheEE-EecCCcc-Cc--chHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence                 112444 5555432 22  367777765433222211 11223455667766652      35667899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|++++.+|++||+||||++||+.++..+.++|.+
T Consensus       154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~  191 (250)
T PRK14266        154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHK  191 (250)
T ss_pred             HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=99.96  E-value=1.1e-29  Score=216.83  Aligned_cols=151  Identities=15%  Similarity=0.138  Sum_probs=115.9

Q ss_pred             ccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCeEEEeeCCCCCCCCcCCChhhc
Q 025366           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAMED  172 (254)
Q Consensus        97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~~~~~~~~~~l~~~e~  172 (254)
                      ++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...   .+..+. +.++...+.  .+++.++
T Consensus         1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~-v~q~~~l~~--~~tv~e~   74 (230)
T TIGR01184         1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQ---PTSGGVILEGKQITEPGPDRMV-VFQNYSLLP--WLTVREN   74 (230)
T ss_pred             CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCChhheE-EecCcccCC--CCCHHHH
Confidence            479999999999999999999999999999999997   99999 5666432   122343 555543222  2688888


Q ss_pred             HHHHHHH-c-CCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 025366          173 PKEAHAR-R-GAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (254)
Q Consensus       173 ~~~~~~~-~-g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~  248 (254)
                      +.+.... . +.........+.++++.+++.  .+.++..||+||+||+++|++++.+|++||+||||++||+..++.+.
T Consensus        75 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~  154 (230)
T TIGR01184        75 IALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQ  154 (230)
T ss_pred             HHHHHHhcccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHH
Confidence            7664321 1 111112233467788887775  35678899999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 025366          249 SMFDE  253 (254)
Q Consensus       249 ~ll~~  253 (254)
                      ++|.+
T Consensus       155 ~~l~~  159 (230)
T TIGR01184       155 EELMQ  159 (230)
T ss_pred             HHHHH
Confidence            98853

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=99.96  E-value=1.1e-29  Score=207.65  Aligned_cols=140  Identities=16%  Similarity=0.206  Sum_probs=102.6

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (254)
                      ++++|+++.|++...  .+++++||++++|++++|+||||||||||+++|+|+++   |++|+              +.+
T Consensus         1 i~~~~l~~~~~~~~~--~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~--------------i~~   61 (173)
T cd03246           1 LEVENVSFRYPGAEP--PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLR---PTSGR--------------VRL   61 (173)
T ss_pred             CEEEEEEEEcCCCCC--cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCe--------------EEE
Confidence            468899999975221  26799999999999999999999999999999999996   66665              233


Q ss_pred             CCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCC
Q 025366          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (254)
Q Consensus       158 ~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~  236 (254)
                      +|..+..  .+.    .......++ ++...... .++.+++          ||+||+||+++|++++.+|++||+||||
T Consensus        62 ~g~~~~~--~~~----~~~~~~i~~~~q~~~~~~-~tv~~~l----------LS~G~~qrv~la~al~~~p~~lllDEPt  124 (173)
T cd03246          62 DGADISQ--WDP----NELGDHVGYLPQDDELFS-GSIAENI----------LSGGQRQRLGLARALYGNPRILVLDEPN  124 (173)
T ss_pred             CCEEccc--CCH----HHHHhheEEECCCCcccc-CcHHHHC----------cCHHHHHHHHHHHHHhcCCCEEEEECCc
Confidence            3322110  010    011122222 33222111 2444544          9999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHhhc
Q 025366          237 LFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       237 ~~lD~~~~~~l~~ll~~  253 (254)
                      ++||+..++.+.+++.+
T Consensus       125 ~~LD~~~~~~l~~~l~~  141 (173)
T cd03246         125 SHLDVEGERALNQAIAA  141 (173)
T ss_pred             cccCHHHHHHHHHHHHH
Confidence            99999999999998853

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=99.96  E-value=3e-29  Score=216.11  Aligned_cols=166  Identities=16%  Similarity=0.088  Sum_probs=116.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCce-ecCCCCCC-----
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP-----  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll--~~~~p~~G~-~~~~~~~~-----  148 (254)
                      +++++||++.|++..    +++++||++++|++++|+|+||||||||+++|+|++  +   |++|+ .++|....     
T Consensus         1 ~i~~~nl~~~~~~~~----~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~---~~~G~i~~~g~~~~~~~~~   73 (248)
T PRK09580          1 MLSIKDLHVSVEDKA----ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLELSPE   73 (248)
T ss_pred             CeEEEEEEEEeCCee----eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCC---CCceEEEECCCccccCCHH
Confidence            478999999998633    669999999999999999999999999999999994  4   89999 56664221     


Q ss_pred             ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH---cCCCCCcc----HHHHHHHHHhhccC---CCCCCC-CCChhh
Q 025366          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWTFN----PLLLLNCLKNLRNQ---GSVYAP-SFDHGV  213 (254)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~---~g~~~~~~----~~~~~~~l~~l~l~---~~~~~~-~lS~G~  213 (254)
                          ...++ +.++.....  .++..+........   .......+    ...+.+.++.+++.   ....+. .||+||
T Consensus        74 ~~~~~~i~~-~~q~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~  150 (248)
T PRK09580         74 DRAGEGIFM-AFQYPVEIP--GVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGE  150 (248)
T ss_pred             HHhhcceEE-EecCchhcc--chhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHH
Confidence                12333 444432211  12222222111111   00000011    22345666766663   233343 799999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +||+++|+|++.+|++||+||||++||+.+++.+.++|.
T Consensus       151 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~  189 (248)
T PRK09580        151 KKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVN  189 (248)
T ss_pred             HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998775

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=99.96  E-value=8.6e-30  Score=207.99  Aligned_cols=140  Identities=18%  Similarity=0.196  Sum_probs=102.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (254)
                      ++++++++.|++....  +++++||++++|++++|+||||||||||+++|+|+++   |++|+              +.+
T Consensus         1 l~~~~l~~~~~~~~~~--~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~---~~~G~--------------i~~   61 (171)
T cd03228           1 IEFKNVSFSYPGRPKP--VLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYD---PTSGE--------------ILI   61 (171)
T ss_pred             CEEEEEEEEcCCCCcc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCCE--------------EEE
Confidence            4688999999863112  6799999999999999999999999999999999996   66665              233


Q ss_pred             CCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCC
Q 025366          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (254)
Q Consensus       158 ~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~  236 (254)
                      +|..+..  ...    .......++ ++...... .++.+++          ||+||+||+++|++++.+|++||+||||
T Consensus        62 ~g~~~~~--~~~----~~~~~~i~~~~~~~~~~~-~t~~e~l----------LS~G~~~rl~la~al~~~p~llllDEP~  124 (171)
T cd03228          62 DGVDLRD--LDL----ESLRKNIAYVPQDPFLFS-GTIRENI----------LSGGQRQRIAIARALLRDPPILILDEAT  124 (171)
T ss_pred             CCEEhhh--cCH----HHHHhhEEEEcCCchhcc-chHHHHh----------hCHHHHHHHHHHHHHhcCCCEEEEECCC
Confidence            3322110  000    111122332 33222221 2444444          9999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHhhc
Q 025366          237 LFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       237 ~~lD~~~~~~l~~ll~~  253 (254)
                      ++||+..++++.+++.+
T Consensus       125 ~gLD~~~~~~l~~~l~~  141 (171)
T cd03228         125 SALDPETEALILEALRA  141 (171)
T ss_pred             cCCCHHHHHHHHHHHHH
Confidence            99999999999998854

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.96  E-value=1.2e-29  Score=264.67  Aligned_cols=170  Identities=15%  Similarity=0.079  Sum_probs=138.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      .+|+++||+|.|++.  ...|++|+||+|++||++||+||||||||||+|+|+|+++   |++|+ .++|...       
T Consensus      1936 ~~L~v~nLsK~Y~~~--~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~---ptsG~I~i~G~~i~~~~~~~ 2010 (2272)
T TIGR01257      1936 DILRLNELTKVYSGT--SSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTT---VTSGDATVAGKSILTNISDV 2010 (2272)
T ss_pred             ceEEEEEEEEEECCC--CceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECcchHHHH
Confidence            479999999999852  1227799999999999999999999999999999999998   99999 6666332       


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~  225 (254)
                      ....|+ +.++.....  .+++.|++.+....+|.+.......+.++++.+++.  .+.++..||||||||+++|+||+.
T Consensus      2011 r~~IGy-~pQ~~~L~~--~LTv~E~L~l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~ 2087 (2272)
T TIGR01257      2011 HQNMGY-CPQFDAIDD--LLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIG 2087 (2272)
T ss_pred             hhhEEE-EeccccCCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhc
Confidence            234565 555543332  379999988766666765433344566788888875  467889999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|+||||||||++||+..++.++++|.+
T Consensus      2088 ~P~VLLLDEPTsGLDp~sr~~l~~lL~~ 2115 (2272)
T TIGR01257      2088 CPPLVLLDEPTTGMDPQARRMLWNTIVS 2115 (2272)
T ss_pred             CCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998864

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=99.96  E-value=1.9e-29  Score=209.67  Aligned_cols=147  Identities=12%  Similarity=0.112  Sum_probs=106.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----CCC
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPD  150 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~~~  150 (254)
                      .+++++++++.|++......+++++||++++|++++|+||||||||||+++|+|+.. ..|++|+ .+++...    ...
T Consensus         2 ~~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~-~~~~~G~i~~~g~~~~~~~~~~   80 (192)
T cd03232           2 SVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKT-AGVITGEILINGRPLDKNFQRS   80 (192)
T ss_pred             cEEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCcceEEEECCEehHHHhhhc
Confidence            368999999999752101125699999999999999999999999999999999752 0167777 4555321    122


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vl  230 (254)
                      .++ +.++...+.  .+++.+++.+...                   +        ..||+||+||+++|+|++.+|++|
T Consensus        81 i~~-~~q~~~~~~--~~tv~~~l~~~~~-------------------~--------~~LSgGe~qrv~la~al~~~p~vl  130 (192)
T cd03232          81 TGY-VEQQDVHSP--NLTVREALRFSAL-------------------L--------RGLSVEQRKRLTIGVELAAKPSIL  130 (192)
T ss_pred             eEE-ecccCcccc--CCcHHHHHHHHHH-------------------H--------hcCCHHHhHHHHHHHHHhcCCcEE
Confidence            232 333222111  1344444432110                   0        089999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHhhc
Q 025366          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       231 IlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+|||+++||+..++.+.+++.+
T Consensus       131 llDEP~~~LD~~~~~~l~~~l~~  153 (192)
T cd03232         131 FLDEPTSGLDSQAAYNIVRFLKK  153 (192)
T ss_pred             EEeCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999998864

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.96  E-value=3.8e-29  Score=217.70  Aligned_cols=149  Identities=14%  Similarity=0.151  Sum_probs=111.0

Q ss_pred             eccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEeeCCCCCCCCcCCChhhc
Q 025366           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMED  172 (254)
Q Consensus        94 vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~  172 (254)
                      ..+++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|+.     +. +.+... + ...+++.++
T Consensus        37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~---p~~G~I~~~g~~-----~~-~~~~~~-~-~~~~tv~en  105 (264)
T PRK13546         37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLS---PTVGKVDRNGEV-----SV-IAISAG-L-SGQLTGIEN  105 (264)
T ss_pred             eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC---CCceEEEECCEE-----eE-EecccC-C-CCCCcHHHH
Confidence            346799999999999999999999999999999999997   99998 555531     11 222211 1 123577777


Q ss_pred             HHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 025366          173 PKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM  250 (254)
Q Consensus       173 ~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~l  250 (254)
                      +.+.....+............+++.+++.  .+..+..||+||+||+++|++++.+|++|||||||++||+..++.+.++
T Consensus       106 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~  185 (264)
T PRK13546        106 IEFKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDK  185 (264)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHH
Confidence            76543333332111122334556655554  3557789999999999999999999999999999999999999999988


Q ss_pred             hhc
Q 025366          251 FDE  253 (254)
Q Consensus       251 l~~  253 (254)
                      +.+
T Consensus       186 L~~  188 (264)
T PRK13546        186 IYE  188 (264)
T ss_pred             HHH
Confidence            753

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=99.96  E-value=6.2e-30  Score=207.41  Aligned_cols=127  Identities=17%  Similarity=0.215  Sum_probs=98.1

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (254)
                      ++++||++.|++.  .  +++++||++++||+++|+||||||||||+++|+|+++   |++|             . +.+
T Consensus         1 l~~~~l~~~~~~~--~--vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G-------------~-v~~   59 (163)
T cd03216           1 LELRGITKRFGGV--K--ALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYK---PDSG-------------E-ILV   59 (163)
T ss_pred             CEEEEEEEEECCe--E--EEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCe-------------E-EEE
Confidence            4688999999863  3  5699999999999999999999999999999999985   5554             4 444


Q ss_pred             CCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC
Q 025366          158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (254)
Q Consensus       158 ~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~  237 (254)
                      ++..+..  .+..   .......++                       +++||+||+||+++|++++.+|++||+||||+
T Consensus        60 ~g~~~~~--~~~~---~~~~~~i~~-----------------------~~qLS~G~~qrl~laral~~~p~illlDEP~~  111 (163)
T cd03216          60 DGKEVSF--ASPR---DARRAGIAM-----------------------VYQLSVGERQMVEIARALARNARLLILDEPTA  111 (163)
T ss_pred             CCEECCc--CCHH---HHHhcCeEE-----------------------EEecCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            4432211  0100   111111221                       11299999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHhhc
Q 025366          238 FLDGGVWKDVSSMFDE  253 (254)
Q Consensus       238 ~lD~~~~~~l~~ll~~  253 (254)
                      +||+..++.+.+++.+
T Consensus       112 ~LD~~~~~~l~~~l~~  127 (163)
T cd03216         112 ALTPAEVERLFKVIRR  127 (163)
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999998854

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=99.96  E-value=7.4e-30  Score=210.06  Aligned_cols=139  Identities=22%  Similarity=0.259  Sum_probs=106.5

Q ss_pred             EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCC
Q 025366           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMD  158 (254)
Q Consensus        79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~  158 (254)
                      +++||++.|++.  .  +++++||++++|++++|+||||||||||+++|+|+++   |++|             . |.++
T Consensus         1 ~~~~l~~~~~~~--~--~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~---~~~G-------------~-v~~~   59 (180)
T cd03214           1 EVENLSVGYGGR--T--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLK---PSSG-------------E-ILLD   59 (180)
T ss_pred             CeeEEEEEECCe--e--eEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCc-------------E-EEEC
Confidence            468999999863  2  6699999999999999999999999999999999985   5555             3 3444


Q ss_pred             CCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCC
Q 025366          159 GFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN  235 (254)
Q Consensus       159 ~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp  235 (254)
                      +..+..  ...    .......++ ++         +++.+++.  .+..+..||+||+||+++|++++.+|+++|+|||
T Consensus        60 g~~~~~--~~~----~~~~~~i~~~~q---------~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP  124 (180)
T cd03214          60 GKDLAS--LSP----KELARKIAYVPQ---------ALELLGLAHLADRPFNELSGGERQRVLLARALAQEPPILLLDEP  124 (180)
T ss_pred             CEECCc--CCH----HHHHHHHhHHHH---------HHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence            433211  111    111112222 11         56666654  3466789999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHhhc
Q 025366          236 YLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       236 ~~~lD~~~~~~l~~ll~~  253 (254)
                      |++||+..++.+.+++.+
T Consensus       125 ~~~LD~~~~~~~~~~l~~  142 (180)
T cd03214         125 TSHLDIAHQIELLELLRR  142 (180)
T ss_pred             ccCCCHHHHHHHHHHHHH
Confidence            999999999999998853

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=99.96  E-value=4.3e-29  Score=209.72  Aligned_cols=157  Identities=15%  Similarity=0.143  Sum_probs=120.0

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..++++++++.|++...  .+++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...       
T Consensus         5 ~~l~~~~l~~~~~~~~~--~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~~~g~~~~~~~~~~   79 (207)
T cd03369           5 GEIEVENLSVRYAPDLP--PVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLE---AEEGKIEIDGIDISTIPLED   79 (207)
T ss_pred             CeEEEEEEEEEeCCCCc--ccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCeEEECCEEhHHCCHHH
Confidence            46899999999975211  26799999999999999999999999999999999997   99999 5666321       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                       ....++ +.++.. ++.  .++.+++.+.       .......+.+.++     .+.++..||+||+||+++|++++.+
T Consensus        80 ~~~~i~~-v~q~~~-~~~--~tv~~~l~~~-------~~~~~~~~~~~l~-----~~~~~~~LS~G~~qrv~laral~~~  143 (207)
T cd03369          80 LRSSLTI-IPQDPT-LFS--GTIRSNLDPF-------DEYSDEEIYGALR-----VSEGGLNLSQGQRQLLCLARALLKR  143 (207)
T ss_pred             HHhhEEE-EecCCc-ccC--ccHHHHhccc-------CCCCHHHHHHHhh-----ccCCCCcCCHHHHHHHHHHHHHhhC
Confidence             123454 555543 222  3666655321       1122233333333     3567889999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++||+||||++||+..++.+.++|.+
T Consensus       144 p~llllDEP~~~LD~~~~~~l~~~l~~  170 (207)
T cd03369         144 PRVLVLDEATASIDYATDALIQKTIRE  170 (207)
T ss_pred             CCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999998864

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=99.96  E-value=4.9e-30  Score=219.16  Aligned_cols=161  Identities=16%  Similarity=0.120  Sum_probs=117.9

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (254)
                      ++++|+++.|++....  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...        .
T Consensus         1 i~~~~l~~~~~~~~~~--~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~   75 (234)
T cd03251           1 VEFKNVTFRYPGDGPP--VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYD---VDSGRILIDGHDVRDYTLASLR   75 (234)
T ss_pred             CEEEEEEEEeCCCCcc--ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcccc---CCCCEEEECCEEhhhCCHHHHH
Confidence            4689999999763112  5699999999999999999999999999999999997   99999 6666321        1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHH---------HHHHHHhh--ccC--CCCCCCCCChhhhh
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLL---------LLNCLKNL--RNQ--GSVYAPSFDHGVGD  215 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~---------~~~~l~~l--~l~--~~~~~~~lS~G~~q  215 (254)
                      ...++ +.++... +.  .++.+++.+...     . .....         +.+.++.+  ++.  .+..+..||+||+|
T Consensus        76 ~~i~~-~~q~~~~-~~--~tv~enl~~~~~-----~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~q  145 (234)
T cd03251          76 RQIGL-VSQDVFL-FN--DTVAENIAYGRP-----G-ATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQ  145 (234)
T ss_pred             hhEEE-eCCCCee-cc--ccHHHHhhccCC-----C-CCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHH
Confidence            12343 5554332 22  466666543211     0 11111         12333333  222  34567899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|++++.+|++||+||||++||+..++.+.+++.+
T Consensus       146 rv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~  183 (234)
T cd03251         146 RIAIARALLKDPPILILDEATSALDTESERLVQAALER  183 (234)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=99.96  E-value=3.3e-29  Score=209.93  Aligned_cols=153  Identities=14%  Similarity=0.134  Sum_probs=113.0

Q ss_pred             EEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEe
Q 025366           78 VEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL  155 (254)
Q Consensus        78 l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i  155 (254)
                      ++++||++.|++... ...+++++||++++|++++|+||||||||||+++|+|+.+   |++|+ .++|     ..++ +
T Consensus         1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~---~~~G~i~~~g-----~i~~-~   71 (204)
T cd03250           1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELE---KLSGSVSVPG-----SIAY-V   71 (204)
T ss_pred             CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCCeEEEcC-----EEEE-E
Confidence            468999999976310 0126699999999999999999999999999999999997   99999 5665     3454 5


Q ss_pred             eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------C----CCCCCCCCChhhhhhHhhhhh
Q 025366          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~lS~G~~qrv~ia~a  222 (254)
                      .++...+ .  .++.+++.+..       ........+.++.+++         +    ....+..||+||+||+++|++
T Consensus        72 ~q~~~l~-~--~t~~enl~~~~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~lara  141 (204)
T cd03250          72 SQEPWIQ-N--GTIRENILFGK-------PFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARA  141 (204)
T ss_pred             ecCchhc-c--CcHHHHhccCC-------CcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHH
Confidence            5554332 2  46666654311       1111222222222221         1    234567899999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~  249 (254)
                      ++.+|+++|+|||+++||+..++.+.+
T Consensus       142 l~~~p~llllDEP~~~LD~~~~~~l~~  168 (204)
T cd03250         142 VYSDADIYLLDDPLSAVDAHVGRHIFE  168 (204)
T ss_pred             HhcCCCEEEEeCccccCCHHHHHHHHH
Confidence            999999999999999999999998877

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=6.8e-29  Score=220.41  Aligned_cols=172  Identities=16%  Similarity=0.130  Sum_probs=127.7

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC---
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK---  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~---  147 (254)
                      +.++|+++||++.|++..    +|+++||++++|++++|+|+||||||||+++|+|+++..  +|++|+ .++|...   
T Consensus        42 ~~~~l~i~nl~~~~~~~~----iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~  117 (305)
T PRK14264         42 GDAKLSVEDLDVYYGDDH----ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQD  117 (305)
T ss_pred             CCceEEEEEEEEEeCCee----eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence            345799999999998733    679999999999999999999999999999999998411  258999 5666321   


Q ss_pred             -------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC------------CC-CCccHHHHHHHHHhhccC------
Q 025366          148 -------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG------------AP-WTFNPLLLLNCLKNLRNQ------  201 (254)
Q Consensus       148 -------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g------------~~-~~~~~~~~~~~l~~l~l~------  201 (254)
                             ....++ +.++.. ++.  .++.+++.+.....+            .. .......+.++++.+++.      
T Consensus       118 ~~~~~~~~~~i~~-v~q~~~-l~~--~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~  193 (305)
T PRK14264        118 GVNLVELRKRVGM-VFQSPN-PFP--KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDR  193 (305)
T ss_pred             cccHHHHhhceEE-EccCCc-ccc--ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHH
Confidence                   112343 455433 222  477887765432211            10 011123456677777653      


Q ss_pred             CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          202 GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       202 ~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+.++..||+||+||+++|+||+.+|+||||||||++||+.++..+.++|.+
T Consensus       194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~  245 (305)
T PRK14264        194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEE  245 (305)
T ss_pred             hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            2566789999999999999999999999999999999999999999998864

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.5e-29  Score=239.18  Aligned_cols=167  Identities=13%  Similarity=0.084  Sum_probs=127.4

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++++++|+++.|+.      +++|+||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|....      
T Consensus       264 ~~l~~~~l~~~~~~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---p~~G~I~~~g~~~~~~~~~~  334 (510)
T PRK09700        264 TVFEVRNVTSRDRK------KVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDK---RAGGEIRLNGKDISPRSPLD  334 (510)
T ss_pred             cEEEEeCccccCCC------cccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCEECCCCCHHH
Confidence            47999999997642      6799999999999999999999999999999999997   99999 66663221      


Q ss_pred             ---CCeEEEeeCCC--CCCCCcCCChhhcHHHHHHH----c----CC-CCCccHHHHHHHHHhhccC---CCCCCCCCCh
Q 025366          149 ---PDVATVLPMDG--FHLYLSQLDAMEDPKEAHAR----R----GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH  211 (254)
Q Consensus       149 ---~~~g~~i~~~~--~~~~~~~l~~~e~~~~~~~~----~----g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~  211 (254)
                         ...++ +.++.  ..++ +.+++.+++.+....    .    +. ........+.++++.+++.   .+.++.+|||
T Consensus       335 ~~~~~i~~-v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg  412 (510)
T PRK09700        335 AVKKGMAY-ITESRRDNGFF-PNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSG  412 (510)
T ss_pred             HHHCCcEE-ccCccccCCCc-CCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCCh
Confidence               13454 55542  1122 236777776542211    0    11 0111223457888888884   4677889999


Q ss_pred             hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||+++|++|+.+|+||||||||++||+.+++.+.++|.+
T Consensus       413 Gq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  454 (510)
T PRK09700        413 GNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQ  454 (510)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999863

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=99.96  E-value=1.7e-29  Score=238.60  Aligned_cols=172  Identities=15%  Similarity=0.157  Sum_probs=128.7

Q ss_pred             ceEEEecceeecccc-cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCce-ecCCCCC-----
Q 025366           76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK-----  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~-~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-~~G~-~~~~~~~-----  147 (254)
                      ++|+++||++.|+.. ...  +++++||++++|++++|+|+||||||||+|+|+|+++   | ++|+ .++|...     
T Consensus       258 ~~l~~~~l~~~~~~~~~~~--vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~~~G~i~~~g~~~~~~~~  332 (506)
T PRK13549        258 VILEVRNLTAWDPVNPHIK--RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYP---GRWEGEIFIDGKPVKIRNP  332 (506)
T ss_pred             ceEEEecCccccccccccc--cccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCcEEEECCEECCCCCH
Confidence            479999999999421 122  6799999999999999999999999999999999985   5 8999 5665321     


Q ss_pred             ----CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHH-Hc-C---CCCCccHHHHHHHHHhhccC---CCCCCCCCChhhh
Q 025366          148 ----PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHA-RR-G---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ----~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~-~~-g---~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~  214 (254)
                          ....++ +.++.. ......+++.+++.+... .+ +   .........+.++++.+++.   .+.++.+||||||
T Consensus       333 ~~~~~~~i~~-v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~k  411 (506)
T PRK13549        333 QQAIAQGIAM-VPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQ  411 (506)
T ss_pred             HHHHHCCCEE-eCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHH
Confidence                122454 555532 111223688887764321 11 1   01111234567888888874   3677889999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|++++.+|++|||||||++||+.+++.+.++|.+
T Consensus       412 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  450 (506)
T PRK13549        412 QKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ  450 (506)
T ss_pred             HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence            999999999999999999999999999999999998763

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.96  E-value=1.1e-29  Score=238.87  Aligned_cols=164  Identities=14%  Similarity=0.095  Sum_probs=125.4

Q ss_pred             EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---------CC
Q 025366           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---------PP  149 (254)
Q Consensus        80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---------~~  149 (254)
                      ++||++.|++.  .  +++|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...         ..
T Consensus         1 ~~nl~~~~~~~--~--il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~~~   73 (491)
T PRK10982          1 MSNISKSFPGV--K--ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQ---KDSGSILFQGKEIDFKSSKEALEN   73 (491)
T ss_pred             CCceEEEeCCE--E--eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCEECCCCCHHHHHhC
Confidence            36899999863  2  6699999999999999999999999999999999997   99999 6676432         12


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCC--CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGA--PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~--~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                      ..++ +.++...+.  .+++.+++.+.... .+.  ........+.++++.+++.  .+.++.+|||||+||+++|++++
T Consensus        74 ~i~~-v~q~~~~~~--~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~  150 (491)
T PRK10982         74 GISM-VHQELNLVL--QRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFS  150 (491)
T ss_pred             CEEE-Eeccccccc--CCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence            3454 555543222  26787777543211 111  1111223567778888775  45678899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|++|||||||++||+..++.+.+++.+
T Consensus       151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~  179 (491)
T PRK10982        151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRK  179 (491)
T ss_pred             hCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998854

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=99.96  E-value=2.5e-29  Score=214.11  Aligned_cols=161  Identities=19%  Similarity=0.207  Sum_probs=115.9

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .++++|+++.|++. ..  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus         2 ~l~~~~l~~~~~~~-~~--~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~~~   75 (229)
T cd03254           2 EIEFENVNFSYDEK-KP--VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYD---PQKGQILIDGIDIRDISRKSL   75 (229)
T ss_pred             eEEEEEEEEecCCC-Cc--cccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEeHHHcCHHHH
Confidence            37899999999742 12  5699999999999999999999999999999999997   99999 5665321        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc-----------C--CCCCCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-----------Q--GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l-----------~--~~~~~~~lS~G~~  214 (254)
                      ....++ +.++.. ++.  .++.+++.+.     ... .....+...++.+++           .  ....+..||+||+
T Consensus        76 ~~~i~~-~~q~~~-~~~--~tv~~~~~~~-----~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~  145 (229)
T cd03254          76 RSMIGV-VLQDTF-LFS--GTIMENIRLG-----RPN-ATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGER  145 (229)
T ss_pred             hhhEEE-ecCCch-hhh--hHHHHHHhcc-----CCC-CCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHH
Confidence            122343 444432 221  2455544321     111 112223333332221           1  2345689999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|++|+.+|++||+||||++||+..++.+.+++.+
T Consensus       146 ~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~  184 (229)
T cd03254         146 QLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEK  184 (229)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.8e-29  Score=237.41  Aligned_cols=164  Identities=15%  Similarity=0.125  Sum_probs=125.5

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEe
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL  155 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i  155 (254)
                      ||+++||++.|++..    +++++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .+++.   ...++ +
T Consensus         1 ml~i~~ls~~~~~~~----il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~---p~~G~i~~~~~---~~i~~-~   69 (530)
T PRK15064          1 MLSTANITMQFGAKP----LFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLE---PSAGNVSLDPN---ERLGK-L   69 (530)
T ss_pred             CEEEEEEEEEeCCcE----eEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEE-E
Confidence            488999999998633    5699999999999999999999999999999999997   99999 55542   23454 5


Q ss_pred             eCCCCCCCCcCCChhhcHHHHHH-----------HcCCCC---------------------CccHHHHHHHHHhhccCC-
Q 025366          156 PMDGFHLYLSQLDAMEDPKEAHA-----------RRGAPW---------------------TFNPLLLLNCLKNLRNQG-  202 (254)
Q Consensus       156 ~~~~~~~~~~~l~~~e~~~~~~~-----------~~g~~~---------------------~~~~~~~~~~l~~l~l~~-  202 (254)
                      .++...+  ..+++.+++.+...           ..+.+.                     .....++.++++.+++.. 
T Consensus        70 ~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~  147 (530)
T PRK15064         70 RQDQFAF--EEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEE  147 (530)
T ss_pred             eccCCcC--CCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChh
Confidence            5544322  22577776653210           001000                     011235667888888753 


Q ss_pred             --CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          203 --SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       203 --~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                        +..+..||+||+||+++|++|+.+|+||||||||++||+..+..+.+++.+
T Consensus       148 ~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~  200 (530)
T PRK15064        148 QHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE  200 (530)
T ss_pred             HhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh
Confidence              356789999999999999999999999999999999999999999998853

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.6e-29  Score=237.55  Aligned_cols=162  Identities=12%  Similarity=0.112  Sum_probs=127.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (254)
                      ++++++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++.   ...|+ 
T Consensus       318 ~~l~~~~l~~~~~~~~----~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~-  386 (530)
T PRK15064        318 NALEVENLTKGFDNGP----LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELE---PDSGTVKWSEN---ANIGY-  386 (530)
T ss_pred             ceEEEEeeEEeeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE-
Confidence            4799999999998733    5699999999999999999999999999999999997   99999 55542   23454 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI  231 (254)
                      +.++........+++.+++...    .. .......+.++++.+++.   .+.++..|||||+||+++|++++.+|++||
T Consensus       387 ~~q~~~~~~~~~~t~~~~~~~~----~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lll  461 (530)
T PRK15064        387 YAQDHAYDFENDLTLFDWMSQW----RQ-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLV  461 (530)
T ss_pred             EcccccccCCCCCcHHHHHHHh----cc-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEE
Confidence            5554321122225666655321    11 112345677888888873   467889999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHhhc
Q 025366          232 VDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       232 lDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||++||+.+++.+.++|.+
T Consensus       462 LDEPt~~LD~~~~~~l~~~l~~  483 (530)
T PRK15064        462 MDEPTNHMDMESIESLNMALEK  483 (530)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999998864

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.96  E-value=4.7e-29  Score=237.80  Aligned_cols=164  Identities=16%  Similarity=0.125  Sum_probs=128.7

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (254)
                      ++++++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++.   ...++ 
T Consensus       321 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~G~i~~~~~---~~i~~-  389 (552)
T TIGR03719       321 KVIEAENLSKGFGDKL----LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ---PDSGTIKIGET---VKLAY-  389 (552)
T ss_pred             eEEEEeeEEEEECCee----eeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEECCc---eEEEE-
Confidence            5799999999998733    6699999999999999999999999999999999997   99999 44322   23555 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI  231 (254)
                      +.++...++ ..+++.+++.+.....+...  .......+++.+++.   .+.++..|||||+||+++|++++.+|++||
T Consensus       390 v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lll  466 (552)
T TIGR03719       390 VDQSRDALD-PNKTVWEEISGGLDIIQLGK--REVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLL  466 (552)
T ss_pred             EeCCccccC-CCCcHHHHHHhhccccccCc--chHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEE
Confidence            566532122 23688887765332122211  122345678888874   366789999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHhhc
Q 025366          232 VDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       232 lDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||++||+.+++.+.++|.+
T Consensus       467 LDEPt~~LD~~~~~~l~~~l~~  488 (552)
T TIGR03719       467 LDEPTNDLDVETLRALEEALLE  488 (552)
T ss_pred             EeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999998864

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=99.96  E-value=4.2e-29  Score=232.41  Aligned_cols=166  Identities=15%  Similarity=0.121  Sum_probs=125.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (254)
                      ++++++||++.|++... ..+|+++||++++|+++||+||||||||||+++|+|+++   |++|+ .++|...     . 
T Consensus        20 ~mL~lknL~~~~~~~~~-~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~---P~sGeI~I~G~~~-----~-   89 (549)
T PRK13545         20 PFDKLKDLFFRSKDGEY-HYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM---PNKGTVDIKGSAA-----L-   89 (549)
T ss_pred             ceeEEEEEEEecCCCcc-ceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC---CCceEEEECCEee-----e-
Confidence            46999999999987421 126799999999999999999999999999999999997   99999 5565321     1 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEE
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIl  232 (254)
                      +.+...  ....+++.+++.+.....+............+++.+++.  .+..+..||+||+||+++|+||+.+|++|||
T Consensus        90 i~~~~~--l~~~lTV~EnL~l~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLL  167 (549)
T PRK13545         90 IAISSG--LNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVI  167 (549)
T ss_pred             EEeccc--cCCCCcHHHHHHhhhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            111111  112367888776533323322212223455677777775  4677889999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHhhc
Q 025366          233 DGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       233 DEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||++||+..++.+.++|.+
T Consensus       168 DEPTsgLD~~sr~~LlelL~e  188 (549)
T PRK13545        168 DEALSVGDQTFTKKCLDKMNE  188 (549)
T ss_pred             ECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999988853

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=2.4e-29  Score=203.07  Aligned_cols=167  Identities=17%  Similarity=0.149  Sum_probs=132.8

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeE---
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA---  152 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g---  152 (254)
                      ++++++++..-+...    .+.+++|++.+||++-|.||||||||||+|+|+|++.   |++|+ .+.+........   
T Consensus         2 ~L~a~~L~~~R~e~~----lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~---p~~G~v~~~~~~i~~~~~~~~   74 (209)
T COG4133           2 MLEAENLSCERGERT----LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLR---PDAGEVYWQGEPIQNVRESYH   74 (209)
T ss_pred             cchhhhhhhccCcce----eecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccC---CCCCeEEecCCCCccchhhHH
Confidence            477888988888743    5699999999999999999999999999999999998   99999 555432211111   


Q ss_pred             EEeeCCCCC-CCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcE
Q 025366          153 TVLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKV  229 (254)
Q Consensus       153 ~~i~~~~~~-~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~v  229 (254)
                      ..+.+-|.. --...+|+.||+.|.....+.   .+...+.+.++.+++.  .+.++.+||-||++|+++|+-++..+++
T Consensus        75 ~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~---~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pL  151 (209)
T COG4133          75 QALLYLGHQPGIKTELTALENLHFWQRFHGS---GNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPL  151 (209)
T ss_pred             HHHHHhhccccccchhhHHHHHHHHHHHhCC---CchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCc
Confidence            001111111 112348999999998887664   3456678889999887  6788889999999999999999999999


Q ss_pred             EEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          230 VIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       230 lIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||||||++||+.....+..++.+
T Consensus       152 WiLDEP~taLDk~g~a~l~~l~~~  175 (209)
T COG4133         152 WILDEPFTALDKEGVALLTALMAA  175 (209)
T ss_pred             eeecCcccccCHHHHHHHHHHHHH
Confidence            999999999999999999888764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=99.96  E-value=2e-29  Score=237.10  Aligned_cols=171  Identities=16%  Similarity=0.021  Sum_probs=123.1

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCce-ecCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK-----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-~~G~-~~~~~~~-----  147 (254)
                      .++++++|+++.|++..    +++++||++++|++++|+||||||||||+|+|+|+.+   + ++|+ .++|...     
T Consensus       258 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~---~~~~G~i~~~g~~~~~~~~  330 (490)
T PRK10938        258 EPRIVLNNGVVSYNDRP----ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHP---QGYSNDLTLFGRRRGSGET  330 (490)
T ss_pred             CceEEEeceEEEECCee----EEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC---cccCCeEEEecccCCCCCC
Confidence            46799999999998633    5699999999999999999999999999999999873   4 5899 5665321     


Q ss_pred             ----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCCC---CCccHHHHHHHHHhhccCC---CCCCCCCChhhhhh
Q 025366          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAP---WTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDP  216 (254)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~~---~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qr  216 (254)
                          ....++ +.++.........++.+........ .+..   .......+.++++.+++..   +.++..||+||+||
T Consensus       331 ~~~~~~~i~~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr  409 (490)
T PRK10938        331 IWDIKKHIGY-VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRL  409 (490)
T ss_pred             HHHHHhhceE-ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHH
Confidence                112344 4443211111112333322211100 0111   1112345678888888753   56778999999999


Q ss_pred             HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++|+|++.+|++||+||||++||+.+++.+.++|.+
T Consensus       410 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~  446 (490)
T PRK10938        410 ALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDV  446 (490)
T ss_pred             HHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998864

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=99.96  E-value=6.6e-29  Score=236.90  Aligned_cols=164  Identities=16%  Similarity=0.132  Sum_probs=128.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (254)
                      ++++++||++.|++..    +++++||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++.   ...|+ 
T Consensus       323 ~~l~~~~l~~~~~~~~----~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~-  391 (556)
T PRK11819        323 KVIEAENLSKSFGDRL----LIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ---PDSGTIKIGET---VKLAY-  391 (556)
T ss_pred             eEEEEEeEEEEECCee----eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCc---eEEEE-
Confidence            4799999999998733    6699999999999999999999999999999999997   99999 44322   23555 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI  231 (254)
                      +.++...++ ..+++.+++.+.....+...  .......+++.+++.   .+..+..|||||+||+++|++++.+|++||
T Consensus       392 v~q~~~~~~-~~~tv~e~l~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll  468 (556)
T PRK11819        392 VDQSRDALD-PNKTVWEEISGGLDIIKVGN--REIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLL  468 (556)
T ss_pred             EeCchhhcC-CCCCHHHHHHhhcccccccc--cHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            565531222 23688887765432222211  123345678888874   367789999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHhhc
Q 025366          232 VDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       232 lDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||++||+.+++.+.++|.+
T Consensus       469 LDEPt~~LD~~~~~~l~~~l~~  490 (556)
T PRK11819        469 LDEPTNDLDVETLRALEEALLE  490 (556)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999998864

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=99.96  E-value=6.2e-29  Score=259.47  Aligned_cols=171  Identities=15%  Similarity=0.181  Sum_probs=139.0

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      .+.|+++||+|.|++..+.  +++|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus       926 ~~~L~I~nLsK~y~~~~k~--aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~---PtsG~I~i~G~dI~~~~~~ 1000 (2272)
T TIGR01257       926 VPGVCVKNLVKIFEPSGRP--AVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLP---PTSGTVLVGGKDIETNLDA 1000 (2272)
T ss_pred             CceEEEEeEEEEecCCCce--EEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCC---CCceEEEECCEECcchHHH
Confidence            3579999999999631122  6799999999999999999999999999999999998   99999 6666432      


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                       +...|. +.++...+  +.+++.|++.+..+..+.........+.++++.+++.  .+.++.+||||||||+++|+|++
T Consensus      1001 ~r~~IG~-~pQ~~~L~--~~LTV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257      1001 VRQSLGM-CPQHNILF--HHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred             HhhcEEE-EecCCcCC--CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence             233565 56654332  2379999998876666654333345677888988886  46778899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|+||||||||++||+..++.++++|.+
T Consensus      1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~ 1106 (2272)
T TIGR01257      1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLK 1106 (2272)
T ss_pred             cCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999864

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=99.96  E-value=1.2e-29  Score=217.31  Aligned_cols=162  Identities=15%  Similarity=0.139  Sum_probs=115.4

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (254)
                      ++++|+++.|++..+ ..+++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...        .
T Consensus         1 l~i~~l~~~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~   76 (238)
T cd03249           1 IEFKNVSFRYPSRPD-VPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYD---PTSGEILLDGVDIRDLNLRWLR   76 (238)
T ss_pred             CeEEEEEEecCCCCC-ccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCC---CCCCEEEECCEehhhcCHHHHH
Confidence            468999999975211 126699999999999999999999999999999999997   99999 5666321        1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHH---------HHHHhh--cc--CCCCCCCCCChhhhh
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNL--RN--QGSVYAPSFDHGVGD  215 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~---------~~l~~l--~l--~~~~~~~~lS~G~~q  215 (254)
                      ...++ +.++... +.  .++.+++.+..     .. .......         +.++.+  ++  .....+..||+||+|
T Consensus        77 ~~i~~-~~q~~~~-~~--~tv~e~l~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q  146 (238)
T cd03249          77 SQIGL-VSQEPVL-FD--GTIAENIRYGK-----PD-ATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQ  146 (238)
T ss_pred             hhEEE-ECCchhh-hh--hhHHHHhhccC-----CC-CCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHH
Confidence            22443 4444322 21  35555543311     11 0111111         222222  11  134567899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|++++.+|++||+||||++||+..++.+.++|.+
T Consensus       147 rv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~  184 (238)
T cd03249         147 RIAIARALLRNPKILLLDEATSALDAESEKLVQEALDR  184 (238)
T ss_pred             HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998864

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=99.96  E-value=1.3e-28  Score=234.80  Aligned_cols=164  Identities=16%  Similarity=0.053  Sum_probs=124.5

Q ss_pred             eEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (254)
Q Consensus        77 ~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (254)
                      +++++||++.|+ +.  .  +++|+||+|++|++++|+||||||||||+++|+|+++   |++|+ .+++.   ...|+ 
T Consensus         4 ~i~~~nls~~~~~~~--~--il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~---p~~G~i~~~~~---~~i~~-   72 (552)
T TIGR03719         4 IYTMNRVSKVVPPKK--E--ILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK---EFNGEARPAPG---IKVGY-   72 (552)
T ss_pred             EEEEeeEEEecCCCC--e--eecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCC---CEEEE-
Confidence            699999999997 42  2  5699999999999999999999999999999999997   99999 44432   23554 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHH--------------cCCCCCc----------------------cHHHHHHHHHhh
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHAR--------------RGAPWTF----------------------NPLLLLNCLKNL  198 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~--------------~g~~~~~----------------------~~~~~~~~l~~l  198 (254)
                      +.++.....  .+++.+++.+....              ++.....                      ....+.++++.+
T Consensus        73 v~Q~~~~~~--~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  150 (552)
T TIGR03719        73 LPQEPQLDP--TKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL  150 (552)
T ss_pred             EeccCCCCC--CCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence            566543222  26888887652211              0111110                      012334556666


Q ss_pred             ccC-CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          199 RNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       199 ~l~-~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++. .+.++..|||||+||+++|++++.+|++|||||||++||+..++.+.++|.+
T Consensus       151 ~l~~~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~  206 (552)
T TIGR03719       151 RCPPWDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE  206 (552)
T ss_pred             CCCcccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHh
Confidence            653 3567889999999999999999999999999999999999999999998864

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.96  E-value=4.4e-29  Score=230.06  Aligned_cols=170  Identities=15%  Similarity=0.116  Sum_probs=135.6

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (254)
                      +++++++|++|+|++-+    ||++|||++++||+++|+|.||||||||+|+|+|.++   |++|+ .++|+...     
T Consensus         6 ~~ll~~~~i~K~FggV~----AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~---p~~G~I~~~G~~~~~~sp~   78 (500)
T COG1129           6 PPLLELRGISKSFGGVK----ALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYP---PDSGEILIDGKPVAFSSPR   78 (500)
T ss_pred             cceeeeecceEEcCCce----eeccceeEEeCceEEEEecCCCCCHHHHHHHHhCccc---CCCceEEECCEEccCCCHH
Confidence            56899999999999854    8899999999999999999999999999999999998   99999 67875432     


Q ss_pred             --CCeEE-EeeCCCCCCCCcCCChhhcHHHHHHH---cCC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          149 --PDVAT-VLPMDGFHLYLSQLDAMEDPKEAHAR---RGA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       149 --~~~g~-~i~~~~~~~~~~~l~~~e~~~~~~~~---~g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                        ...|. +|.|+--..+  ++++.||+-..+..   +++ .+........++++.+++.  .+..+.+||.||||-|+|
T Consensus        79 ~A~~~GI~~V~QEl~L~p--~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeI  156 (500)
T COG1129          79 DALAAGIATVHQELSLVP--NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEI  156 (500)
T ss_pred             HHHhCCcEEEeechhccC--CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHH
Confidence              11222 2555544333  38999988654332   232 2233344567788877764  667788999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+|+..+++||||||||+.|+....+.+.+++.+
T Consensus       157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~  190 (500)
T COG1129         157 ARALSFDARVLILDEPTAALTVKETERLFDLIRR  190 (500)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999888753

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=99.96  E-value=3.7e-29  Score=235.92  Aligned_cols=171  Identities=13%  Similarity=0.108  Sum_probs=127.3

Q ss_pred             ceEEEecceeecccc-cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCce-ecCCCCC-----
Q 025366           76 PVVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDSQVK-----  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~-~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-~~G~-~~~~~~~-----  147 (254)
                      ++++++|+++.|+.. ...  +++++||++++|++++|+||||||||||+|+|+|+++   | ++|+ .++|...     
T Consensus       256 ~~l~~~~l~~~~~~~~~~~--~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~---p~~~G~i~~~g~~~~~~~~  330 (500)
T TIGR02633       256 VILEARNLTCWDVINPHRK--RVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYP---GKFEGNVFINGKPVDIRNP  330 (500)
T ss_pred             ceEEEeCCccccccccccc--ccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCC---CCCCeEEEECCEECCCCCH
Confidence            379999999999421 112  6799999999999999999999999999999999985   6 7999 5666322     


Q ss_pred             ----CCCeEEEeeCCCC--CCCCcCCChhhcHHHHHH-Hc-C---CCCCccHHHHHHHHHhhccC---CCCCCCCCChhh
Q 025366          148 ----PPDVATVLPMDGF--HLYLSQLDAMEDPKEAHA-RR-G---APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGV  213 (254)
Q Consensus       148 ----~~~~g~~i~~~~~--~~~~~~l~~~e~~~~~~~-~~-g---~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~  213 (254)
                          ....++ +.++..  .++ +.+++.+++.+... .. .   .........+.++++.+++.   .+.++..|||||
T Consensus       331 ~~~~~~~i~~-v~q~~~~~~l~-~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq  408 (500)
T TIGR02633       331 AQAIRAGIAM-VPEDRKRHGIV-PILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGN  408 (500)
T ss_pred             HHHHhCCCEE-cCcchhhCCcC-CCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHH
Confidence                123454 555421  111 23677777654321 11 1   11111234567888888884   367788999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|++++.+|++|||||||++||+..++.+.+++.+
T Consensus       409 kqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  448 (500)
T TIGR02633       409 QQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQ  448 (500)
T ss_pred             HHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988754

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=7.8e-30  Score=202.64  Aligned_cols=163  Identities=15%  Similarity=0.149  Sum_probs=127.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      .++++++.+.-++.  .  +|+++||.+.+||+++|.||||||||||+|+++-++.   |++|+ .|.|+...       
T Consensus         3 lle~kq~~y~a~~a--~--il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lis---p~~G~l~f~Ge~vs~~~pea~   75 (223)
T COG4619           3 LLELKQVGYLAGDA--K--ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLIS---PTSGTLLFEGEDVSTLKPEAY   75 (223)
T ss_pred             chHHHHHHhhcCCC--e--eecceeeeecCCceEEEeCCCCccHHHHHHHHHhccC---CCCceEEEcCccccccChHHH
Confidence            45666665555553  3  5699999999999999999999999999999999998   99999 78876431       


Q ss_pred             -CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhc
Q 025366          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       149 -~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                       ..+.+ +.+..-.+.   -++.+|+.+....+.  ..++......+++.++++   ....+..||||++||++++|.|.
T Consensus        76 Rq~VsY-~~Q~paLfg---~tVeDNlifP~~~r~--rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq  149 (223)
T COG4619          76 RQQVSY-CAQTPALFG---DTVEDNLIFPWQIRN--RRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ  149 (223)
T ss_pred             HHHHHH-HHcCccccc---cchhhccccchHHhc--cCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh
Confidence             11111 222222222   367777766444332  334678888999999987   46678899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      --|+||+|||||+.||+.+++.+-++|.
T Consensus       150 ~~P~ILLLDE~TsALD~~nkr~ie~mi~  177 (223)
T COG4619         150 FMPKILLLDEITSALDESNKRNIEEMIH  177 (223)
T ss_pred             cCCceEEecCchhhcChhhHHHHHHHHH
Confidence            9999999999999999999999999875

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=99.96  E-value=3.2e-29  Score=209.65  Aligned_cols=147  Identities=17%  Similarity=0.099  Sum_probs=100.9

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEee
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLP  156 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~  156 (254)
                      ++++|+++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+.. ..|++|+ .++|+.          
T Consensus         1 l~~~~l~~~~~~~--~--~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~-~~p~~G~i~~~g~~----------   65 (200)
T cd03217           1 LEIKDLHVSVGGK--E--ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPK-YEVTEGEILFKGED----------   65 (200)
T ss_pred             CeEEEEEEEeCCE--E--eeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCc-CCCCccEEEECCEE----------
Confidence            4688999999863  2  6699999999999999999999999999999999941 1167776 444421          


Q ss_pred             CCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCC
Q 025366          157 MDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN  235 (254)
Q Consensus       157 ~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp  235 (254)
                           +..  ....   .......++ ++.........+.+.+    ......||+||+||+++|++++.+|++||+|||
T Consensus        66 -----~~~--~~~~---~~~~~~i~~v~q~~~~~~~~~~~~~l----~~~~~~LS~G~~qrv~laral~~~p~illlDEP  131 (200)
T cd03217          66 -----ITD--LPPE---ERARLGIFLAFQYPPEIPGVKNADFL----RYVNEGFSGGEKKRNEILQLLLLEPDLAILDEP  131 (200)
T ss_pred             -----CCc--CCHH---HHhhCcEEEeecChhhccCccHHHHH----hhccccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence                 110  0000   000001111 1111111111111111    122358999999999999999999999999999


Q ss_pred             CCCCCHHHHHHHHHHhhc
Q 025366          236 YLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       236 ~~~lD~~~~~~l~~ll~~  253 (254)
                      |++||+.++..+.+++.+
T Consensus       132 t~~LD~~~~~~l~~~L~~  149 (200)
T cd03217         132 DSGLDIDALRLVAEVINK  149 (200)
T ss_pred             CccCCHHHHHHHHHHHHH
Confidence            999999999999998853

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=99.96  E-value=8.9e-29  Score=234.74  Aligned_cols=161  Identities=14%  Similarity=0.167  Sum_probs=127.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------C
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~  148 (254)
                      .++++||++.|++.. .  +|+|+||++++|+.++|+||||||||||+++|+|+++   |++|+ .++|...       +
T Consensus       334 ~I~~~~vsf~Y~~~~-~--vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~---p~~G~I~i~g~~i~~~~~~lr  407 (529)
T TIGR02868       334 TLELRDLSFGYPGSP-P--VLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLD---PLQGEVTLDGVSVSSLQDELR  407 (529)
T ss_pred             eEEEEEEEEecCCCC-c--eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhHHHHHH
Confidence            599999999997632 2  5699999999999999999999999999999999998   99999 6776322       1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhhh
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVGD  215 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~q  215 (254)
                      ...++ ++++.+.+.   -|+.+|+.+.     .+ +.+.+++.++++..++.         .+..    -..|||||||
T Consensus       408 ~~i~~-V~Q~~~lF~---~TI~eNI~~g-----~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQ  477 (529)
T TIGR02868       408 RRISV-FAQDAHLFD---TTVRDNLRLG-----RP-DATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQ  477 (529)
T ss_pred             hheEE-EccCccccc---ccHHHHHhcc-----CC-CCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHH
Confidence            24454 788876554   3777776542     22 23455666666665543         2332    2469999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|||++.+|+|+||||||++||+.+.+.+.+.+.+
T Consensus       478 RiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~  515 (529)
T TIGR02868       478 RLALARALLADAPILLLDEPTEHLDAGTESELLEDLLA  515 (529)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888753

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2.4e-28  Score=218.73  Aligned_cols=172  Identities=14%  Similarity=0.123  Sum_probs=127.9

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhccc--CCCCce-ecCCCCC-----
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKI--WPQKAS-SFDSQVK-----  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~--~p~~G~-~~~~~~~-----  147 (254)
                      .+|+++|+++.|.+....  +|+|+||+|++|+++||+|+||||||||+++|+|+....  .|++|+ .++|...     
T Consensus        79 ~~i~~~nls~~y~~~~~~--~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~  156 (329)
T PRK14257         79 NVFEIRNFNFWYMNRTKH--VLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI  156 (329)
T ss_pred             ceEEEEeeEEEecCCCce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc
Confidence            479999999999642222  569999999999999999999999999999999998411  156899 6666432     


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC-ccHHHHHHHHHhhccC------CCCCCCCCChhhhh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT-FNPLLLLNCLKNLRNQ------GSVYAPSFDHGVGD  215 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~-~~~~~~~~~l~~l~l~------~~~~~~~lS~G~~q  215 (254)
                           ....++ ++++...+ .  .++.+|+.+.....+.... ........+++.+++.      .......||+||+|
T Consensus       157 ~~~~lr~~i~~-v~q~~~~~-~--~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkq  232 (329)
T PRK14257        157 SSLELRTRIGM-VFQKPTPF-E--MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQ  232 (329)
T ss_pred             chHhhhccEEE-EecCCccC-C--CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHH
Confidence                 123444 56654433 2  5888888764332222111 1112345666766652      34677899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|||++.+|+||||||||++||+.+.+.+.++|.+
T Consensus       233 Rl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~  270 (329)
T PRK14257        233 RLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILE  270 (329)
T ss_pred             HHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999888753

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=99.96  E-value=1.6e-28  Score=210.14  Aligned_cols=160  Identities=14%  Similarity=0.150  Sum_probs=115.0

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (254)
                      ++++|+++.|++. ..  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...        .
T Consensus         1 l~~~~l~~~~~~~-~~--~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~v~~~g~~~~~~~~~~~~   74 (236)
T cd03253           1 IEFENVTFAYDPG-RP--VLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYD---VSSGSILIDGQDIREVTLDSLR   74 (236)
T ss_pred             CEEEEEEEEeCCC-Cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEhhhCCHHHHH
Confidence            4688999999631 22  5699999999999999999999999999999999997   99999 5666321        1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHH---------HHHhhccC----CCCCCCCCChhhhh
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN---------CLKNLRNQ----GSVYAPSFDHGVGD  215 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~---------~l~~l~l~----~~~~~~~lS~G~~q  215 (254)
                      ...++ +.++... +.  .++.+++.+..     .. ........         .++.+..+    ...++..||+||+|
T Consensus        75 ~~i~~-~~q~~~~-~~--~tv~~nl~~~~-----~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~  144 (236)
T cd03253          75 RAIGV-VPQDTVL-FN--DTIGYNIRYGR-----PD-ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQ  144 (236)
T ss_pred             hhEEE-ECCCChh-hc--chHHHHHhhcC-----CC-CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHH
Confidence            22444 4444332 22  46666554321     11 11111222         22222111    23456799999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|++|+.+|++||+||||++||+..++.+.++|.+
T Consensus       145 rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~  182 (236)
T cd03253         145 RVAIARAILKNPPILLLDEATSALDTHTEREIQAALRD  182 (236)
T ss_pred             HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998853

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.96  E-value=2.7e-28  Score=235.91  Aligned_cols=166  Identities=14%  Similarity=0.041  Sum_probs=121.3

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (254)
                      |.+|+++||++.|++..    +++|+||+|++|+++||+||||||||||+|+|+|++.   |++|+ .++++.   ..+.
T Consensus         1 m~~l~i~~ls~~~~~~~----il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~---p~~G~I~~~~~~---~~~~   70 (635)
T PRK11147          1 MSLISIHGAWLSFSDAP----LLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVL---LDDGRIIYEQDL---IVAR   70 (635)
T ss_pred             CcEEEEeeEEEEeCCce----eEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCCeEEEeCCCC---EEEE
Confidence            45899999999998733    5699999999999999999999999999999999987   99999 455421   1222


Q ss_pred             EeeCCCCCCCCcCCChhhcH------------------------------HHHHH---HcC-CCCCccHHHHHHHHHhhc
Q 025366          154 VLPMDGFHLYLSQLDAMEDP------------------------------KEAHA---RRG-APWTFNPLLLLNCLKNLR  199 (254)
Q Consensus       154 ~i~~~~~~~~~~~l~~~e~~------------------------------~~~~~---~~g-~~~~~~~~~~~~~l~~l~  199 (254)
                       +.+....  ....++.+..                              .....   .+. .........+.++++.++
T Consensus        71 -l~q~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg  147 (635)
T PRK11147         71 -LQQDPPR--NVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG  147 (635)
T ss_pred             -eccCCCC--CCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC
Confidence             2221110  0001111111                              00000   000 001112345678888888


Q ss_pred             cCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          200 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       200 l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +..+.++..|||||+|||++|++|+.+|+||||||||++||+.+++.+.++|.+
T Consensus       148 l~~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~  201 (635)
T PRK11147        148 LDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKT  201 (635)
T ss_pred             CCCCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHh
Confidence            877888899999999999999999999999999999999999999999998853

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=99.96  E-value=1.4e-28  Score=237.79  Aligned_cols=163  Identities=15%  Similarity=0.088  Sum_probs=128.1

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      .-++++||+++|+....  .+|+|+||+|++||.+||+|+||||||||+|+|+|++.   |+.|+ .+||...       
T Consensus       470 g~I~~~nvsf~y~~~~~--~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~---p~~G~I~~dg~dl~~i~~~~  544 (709)
T COG2274         470 GEIEFENVSFRYGPDDP--PVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK---PQQGRILLDGVDLNDIDLAS  544 (709)
T ss_pred             ceEEEEEEEEEeCCCCc--chhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEeHHhcCHHH
Confidence            35899999999988533  35699999999999999999999999999999999998   99999 7787321       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhc---------cCCCCCC----CCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------l~~~~~~----~~lS~G~  213 (254)
                       +...|+ +.++++.+..   ++.||+..     +.|.. +.+.+.++++.-+         ++.+..+    ..|||||
T Consensus       545 lR~~ig~-V~Q~~~Lf~g---SI~eNi~l-----~~p~~-~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQ  614 (709)
T COG2274         545 LRRQVGY-VLQDPFLFSG---SIRENIAL-----GNPEA-TDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQ  614 (709)
T ss_pred             HHhheeE-EcccchhhcC---cHHHHHhc-----CCCCC-CHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHH
Confidence             455675 8888876653   67776643     33332 2344444444333         3333333    4699999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||+++|||+..+|+||||||||++||+.+.+.+.+.+++
T Consensus       615 rQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~  654 (709)
T COG2274         615 RQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQ  654 (709)
T ss_pred             HHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988764

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=99.96  E-value=1.1e-28  Score=196.13  Aligned_cols=114  Identities=18%  Similarity=0.232  Sum_probs=95.0

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (254)
                      ++++|+++.|++.  .  +++++||++++|++++|+|+||||||||+++|+|+++   |++|+              |.+
T Consensus         1 l~~~~l~~~~~~~--~--~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~--------------i~~   59 (144)
T cd03221           1 IELENLSKTYGGK--L--LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELE---PDEGI--------------VTW   59 (144)
T ss_pred             CEEEEEEEEECCc--e--EEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCC---CCceE--------------EEE
Confidence            4688999999863  2  6699999999999999999999999999999999995   55554              333


Q ss_pred             CCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCC
Q 025366          158 DGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNY  236 (254)
Q Consensus       158 ~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~  236 (254)
                      ++..                 ..++ ++                        ||+||+||+++|++++.+|+++|+|||+
T Consensus        60 ~~~~-----------------~i~~~~~------------------------lS~G~~~rv~laral~~~p~illlDEP~   98 (144)
T cd03221          60 GSTV-----------------KIGYFEQ------------------------LSGGEKMRLALAKLLLENPNLLLLDEPT   98 (144)
T ss_pred             CCeE-----------------EEEEEcc------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCc
Confidence            3210                 0111 11                        9999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHhhc
Q 025366          237 LFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       237 ~~lD~~~~~~l~~ll~~  253 (254)
                      ++||+..+..+.+++.+
T Consensus        99 ~~LD~~~~~~l~~~l~~  115 (144)
T cd03221          99 NHLDLESIEALEEALKE  115 (144)
T ss_pred             cCCCHHHHHHHHHHHHH
Confidence            99999999999998864

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=99.96  E-value=4e-29  Score=209.78  Aligned_cols=172  Identities=15%  Similarity=0.074  Sum_probs=123.5

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (254)
                      ++++|+++||+..|+++.    +|+|+|++|++||-++|+||||||||||+++++|...   |++|. .+.|+..     
T Consensus        28 ~~~li~l~~v~v~r~gk~----iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~---pssg~~~~~G~~~G~~~~  100 (257)
T COG1119          28 NEPLIELKNVSVRRNGKK----ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP---PSSGDVTLLGRRFGKGET  100 (257)
T ss_pred             CcceEEecceEEEECCEe----eccccceeecCCCcEEEECCCCCCHHHHHHHHhcccC---CCCCceeeeeeeccCCcc
Confidence            457899999999999954    5699999999999999999999999999999999995   88877 3333211     


Q ss_pred             ----CCCeEEEeeCCCCCCCCcCCChhhcHHH-HHHHcCCCC-C---ccHHHHHHHHHhhccC--CCCCCCCCChhhhhh
Q 025366          148 ----PPDVATVLPMDGFHLYLSQLDAMEDPKE-AHARRGAPW-T---FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDP  216 (254)
Q Consensus       148 ----~~~~g~~i~~~~~~~~~~~l~~~e~~~~-~~~~~g~~~-~---~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qr  216 (254)
                          +..+|. +.-.-...+....++.+-+.- .....|+.+ .   .+......+++.+++.  .+++...||-||+||
T Consensus       101 ~~elrk~IG~-vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rr  179 (257)
T COG1119         101 IFELRKRIGL-VSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRR  179 (257)
T ss_pred             hHHHHHHhCc-cCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHH
Confidence                122232 110000000111122221100 111233332 2   2345567778877776  678889999999999


Q ss_pred             HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.||||++.+|++||||||+.|||...++.+.+.|++
T Consensus       180 vLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~  216 (257)
T COG1119         180 VLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEE  216 (257)
T ss_pred             HHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998865

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=99.96  E-value=2.8e-28  Score=206.36  Aligned_cols=154  Identities=12%  Similarity=0.088  Sum_probs=112.6

Q ss_pred             EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC---------
Q 025366           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---------  148 (254)
Q Consensus        79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~---------  148 (254)
                      .+.++.+.|+.. ..  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .+++....         
T Consensus         2 ~~~~~~~~~~~~-~~--il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~---~~~G~i~~~g~~~~~~~~~~~~~   75 (218)
T cd03290           2 QVTNGYFSWGSG-LA--TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQ---TLEGKVHWSNKNESEPSFEATRS   75 (218)
T ss_pred             eeeeeEEecCCC-Cc--ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCcccccccccccch
Confidence            467899999753 22  6699999999999999999999999999999999997   99999 56653210         


Q ss_pred             ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChh
Q 025366          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHG  212 (254)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G  212 (254)
                         ...++ +.++... +.  .++.+++....     .  ........+++.+++.             ...++..||+|
T Consensus        76 ~~~~~i~~-~~q~~~~-~~--~t~~~nl~~~~-----~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G  144 (218)
T cd03290          76 RNRYSVAY-AAQKPWL-LN--ATVEENITFGS-----P--FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGG  144 (218)
T ss_pred             hhcceEEE-EcCCCcc-cc--ccHHHHHhhcC-----c--CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHH
Confidence               12333 4444432 22  46666654321     1  1122223344433321             13467899999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~  249 (254)
                      |+||+++|++++.+|++||+||||++||+..++.+.+
T Consensus       145 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~  181 (218)
T cd03290         145 QRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQ  181 (218)
T ss_pred             HHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHH
Confidence            9999999999999999999999999999999998877

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.4e-28  Score=231.84  Aligned_cols=164  Identities=18%  Similarity=0.168  Sum_probs=128.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      -.|+++||++.|+.++ .+.+++|+||+|++||++||+||||+||||++++|..++.   |++|+ .+||...       
T Consensus       464 G~IeF~~VsFaYP~Rp-~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~---PtsG~IllDG~~i~~~~~~~  539 (716)
T KOG0058|consen  464 GVIEFEDVSFAYPTRP-DVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYD---PTSGRILLDGVPISDINHKY  539 (716)
T ss_pred             ceEEEEEeeeecCCCC-CchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCeehhhcCHHH
Confidence            4699999999999864 4557899999999999999999999999999999999998   99999 7888532       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHH---------hhccCCCCC----CCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSVY----APSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~l~~~~~----~~~lS~G~  213 (254)
                       +..+|. |.|+.-.+.   -++.||+.+     |.+ ..+.+++..+.+         ++-.+.+..    -.+|||||
T Consensus       540 lr~~Ig~-V~QEPvLFs---~sI~eNI~Y-----G~~-~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQ  609 (716)
T KOG0058|consen  540 LRRKIGL-VGQEPVLFS---GSIRENIAY-----GLD-NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQ  609 (716)
T ss_pred             HHHHeee-eeccceeec---ccHHHHHhc-----CCC-CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchH
Confidence             234564 677665443   377888754     443 333444443333         333333333    34899999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||+||||||+.+|.||||||.|+.||.++...+.+.++.
T Consensus       610 KQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~  649 (716)
T KOG0058|consen  610 KQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDR  649 (716)
T ss_pred             HHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999888863

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=99.96  E-value=3.2e-28  Score=235.37  Aligned_cols=166  Identities=16%  Similarity=0.153  Sum_probs=128.0

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~  154 (254)
                      -.+|+++||++.|++..    +++++||+|++|+++||+||||||||||+++|+|+++   |++|++..+.  ....|+ 
T Consensus       317 ~~~l~~~~l~~~~~~~~----il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~--~~~i~y-  386 (635)
T PRK11147        317 KIVFEMENVNYQIDGKQ----LVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQ---ADSGRIHCGT--KLEVAY-  386 (635)
T ss_pred             CceEEEeeeEEEECCeE----EEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECC--CcEEEE-
Confidence            35799999999998733    5699999999999999999999999999999999997   9999943243  123555 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI  231 (254)
                      +.++...+ .+.+++.+++.....  ..........+.++++.+++.   .+.++..||||||||+++|++++.+|++||
T Consensus       387 ~~q~~~~l-~~~~tv~e~l~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLl  463 (635)
T PRK11147        387 FDQHRAEL-DPEKTVMDNLAEGKQ--EVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLI  463 (635)
T ss_pred             EeCccccc-CCCCCHHHHHHhhcc--cccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence            55543222 223677777654221  111011134567788887774   367788999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHhhc
Q 025366          232 VDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       232 lDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||++||+.+++.+.+++.+
T Consensus       464 LDEPt~~LD~~~~~~l~~~l~~  485 (635)
T PRK11147        464 LDEPTNDLDVETLELLEELLDS  485 (635)
T ss_pred             EcCCCCCCCHHHHHHHHHHHHh
Confidence            9999999999999999998864

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=99.96  E-value=1.4e-28  Score=212.31  Aligned_cols=159  Identities=18%  Similarity=0.148  Sum_probs=118.7

Q ss_pred             EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC--------C
Q 025366           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------P  149 (254)
Q Consensus        79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~--------~  149 (254)
                      +++||++.  .      +|+++||++++|++++|+|+||||||||+++|+|++    |.+|+ .++|....        .
T Consensus         2 ~~~~l~~~--~------~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~----~~~G~i~~~g~~i~~~~~~~~~~   69 (248)
T PRK03695          2 QLNDVAVS--T------RLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLL----PGSGSIQFAGQPLEAWSAAELAR   69 (248)
T ss_pred             cccccchh--c------eecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCC----CCCeEEEECCEecCcCCHHHHhh
Confidence            46677764  1      569999999999999999999999999999999998    56899 66664321        1


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC--
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL--  225 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~--  225 (254)
                      ..++ +.++...+.  .+++.+++.+... .+.........+.++++.+++.  .+..+..||+||+||+++|+|++.  
T Consensus        70 ~i~~-v~q~~~~~~--~~tv~~nl~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~  145 (248)
T PRK03695         70 HRAY-LSQQQTPPF--AMPVFQYLTLHQP-DKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVW  145 (248)
T ss_pred             heEE-ecccCccCC--CccHHHHHHhcCc-cCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccc
Confidence            2344 455432222  2577776654311 1111112234567888888775  366788999999999999999986  


Q ss_pred             -----CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          226 -----QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       226 -----~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                           +|++||+||||++||+..++.+.+++.+
T Consensus       146 ~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~  178 (248)
T PRK03695        146 PDINPAGQLLLLDEPMNSLDVAQQAALDRLLSE  178 (248)
T ss_pred             cccCCCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence                 6799999999999999999999998864

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.96  E-value=3.7e-29  Score=212.36  Aligned_cols=156  Identities=16%  Similarity=0.086  Sum_probs=122.8

Q ss_pred             eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------CCeEEEeeCCCCCCCC
Q 025366           93 RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------PDVATVLPMDGFHLYL  164 (254)
Q Consensus        93 ~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------~~~g~~i~~~~~~~~~  164 (254)
                      .+.|+.|+||+|++|+++|++|+|||||||++|+|+|++.   |++|. .+.|....       .+.+.+..+.-..++ 
T Consensus        36 ~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~---p~~G~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~W-  111 (325)
T COG4586          36 SIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLL---PTSGKVRVNGKDPFRRREEYLRSIGLVMGQKLQLWW-  111 (325)
T ss_pred             hhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccc---cCCCeEEecCcCcchhHHHHHHHHHHHhhhhheeee-
Confidence            4668899999999999999999999999999999999997   99998 55553221       112221111111111 


Q ss_pred             cCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH
Q 025366          165 SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (254)
Q Consensus       165 ~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~  242 (254)
                       ++++.+........+.++.+.-.++...+.+.|++.  .+.++..||-|||.|+.+|.+|+++|+||+|||||.+||..
T Consensus       112 -dlp~~ds~~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~  190 (325)
T COG4586         112 -DLPALDSLEVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVN  190 (325)
T ss_pred             -echhhhhHHHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchh
Confidence             245666666666677777665566777788888887  67788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 025366          243 VWKDVSSMFDE  253 (254)
Q Consensus       243 ~~~~l~~ll~~  253 (254)
                      .+..+++++.+
T Consensus       191 aq~~ir~Flke  201 (325)
T COG4586         191 AQANIREFLKE  201 (325)
T ss_pred             HHHHHHHHHHH
Confidence            99999999865

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=3.5e-28  Score=234.97  Aligned_cols=163  Identities=16%  Similarity=0.071  Sum_probs=120.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEe
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL  155 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i  155 (254)
                      ||.++||++.|++..    +|+++||+|++|+++||+||||||||||+|+|+|++.   |++|+ .+.+..   ..++ +
T Consensus         1 ~i~i~nls~~~g~~~----~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~---pd~G~I~~~~~~---~i~~-~   69 (638)
T PRK10636          1 MIVFSSLQIRRGVRV----LLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEIS---ADGGSYTFPGNW---QLAW-V   69 (638)
T ss_pred             CEEEEEEEEEeCCce----eecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEecCCC---EEEE-E
Confidence            488999999998743    5699999999999999999999999999999999987   99999 455431   2333 3


Q ss_pred             eCCCCCCCCcCCChhhcHHH-----------------------HH---HHcC-CCCCccHHHHHHHHHhhccC---CCCC
Q 025366          156 PMDGFHLYLSQLDAMEDPKE-----------------------AH---ARRG-APWTFNPLLLLNCLKNLRNQ---GSVY  205 (254)
Q Consensus       156 ~~~~~~~~~~~l~~~e~~~~-----------------------~~---~~~g-~~~~~~~~~~~~~l~~l~l~---~~~~  205 (254)
                      .++.....   .+..+.+..                       ..   .... .........+..+++.+++.   .+.+
T Consensus        70 ~q~~~~~~---~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~  146 (638)
T PRK10636         70 NQETPALP---QPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP  146 (638)
T ss_pred             ecCCCCCC---CCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence            43321111   121111100                       00   0000 00111234567888888884   3678


Q ss_pred             CCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       206 ~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +..|||||+||+++|++|+.+|+||||||||++||+.+...+.++|.+
T Consensus       147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~  194 (638)
T PRK10636        147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKS  194 (638)
T ss_pred             hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHh
Confidence            899999999999999999999999999999999999999999988854

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=99.96  E-value=1.5e-28  Score=206.36  Aligned_cols=151  Identities=15%  Similarity=0.156  Sum_probs=125.9

Q ss_pred             ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEeeCC-CCCCCCcCCCh
Q 025366           92 QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMD-GFHLYLSQLDA  169 (254)
Q Consensus        92 ~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~-~~~~~~~~l~~  169 (254)
                      ..+.||+||||++++||.+||+|+||||||||+|+|+|.++   |++|+ .+.|++...     +.+. |+   ++++|.
T Consensus        38 ~~~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~---Pt~G~v~v~G~v~~l-----i~lg~Gf---~pelTG  106 (249)
T COG1134          38 AEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYK---PTSGKVKVTGKVAPL-----IELGAGF---DPELTG  106 (249)
T ss_pred             ceEEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccC---CCCceEEEcceEehh-----hhcccCC---Ccccch
Confidence            34668999999999999999999999999999999999998   99999 566654321     1111 22   233899


Q ss_pred             hhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHH
Q 025366          170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV  247 (254)
Q Consensus       170 ~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l  247 (254)
                      .+|+.+.....|+......+...++.+.-.++  .+.++..||.||+-|++++.|...+|++||+||..+..|+..+++.
T Consensus       107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~  186 (249)
T COG1134         107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC  186 (249)
T ss_pred             HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHH
Confidence            99999998899987666777777777755554  6888999999999999999999999999999999999999998888


Q ss_pred             HHHhhc
Q 025366          248 SSMFDE  253 (254)
Q Consensus       248 ~~ll~~  253 (254)
                      .+.+.+
T Consensus       187 ~~rl~e  192 (249)
T COG1134         187 LERLNE  192 (249)
T ss_pred             HHHHHH
Confidence            777654

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.7e-29  Score=203.48  Aligned_cols=168  Identities=14%  Similarity=0.174  Sum_probs=129.5

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCC-----
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPD-----  150 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~-----  150 (254)
                      |++++||+|.|++..    +++++|+++++|.+.+|+|||||||||||.+++.+++   +++|+ .++|......     
T Consensus         1 MI~i~nv~K~y~~~~----vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~---~d~G~i~i~g~~~~~~~s~~L   73 (252)
T COG4604           1 MITIENVSKSYGTKV----VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLK---KDSGEITIDGLELTSTPSKEL   73 (252)
T ss_pred             CeeehhhhHhhCCEE----eeccceeeecCCceeEEECCCCccHHHHHHHHHHhcc---ccCceEEEeeeecccCChHHH
Confidence            588999999999844    6699999999999999999999999999999999997   88888 5666322110     


Q ss_pred             --eEEEeeCCCCCCCCcCCChhhcHHHHHH--HcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          151 --VATVLPMDGFHLYLSQLDAMEDPKEAHA--RRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       151 --~g~~i~~~~~~~~~~~l~~~e~~~~~~~--~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                        .-.++.+....  +..+|+.+...|.+-  ..|-+...+...+.+.++.+.+.  .+++..+|||||+||..+|..++
T Consensus        74 Ak~lSILkQ~N~i--~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVla  151 (252)
T COG4604          74 AKKLSILKQENHI--NSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLA  151 (252)
T ss_pred             HHHHHHHHhhchh--hheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeee
Confidence              11112222221  122566665554321  12223455667788899988887  67899999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+.|.++||||.+.||.....++++++.+
T Consensus       152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrr  180 (252)
T COG4604         152 QDTDYVLLDEPLNNLDMKHSVQIMKILRR  180 (252)
T ss_pred             ccCcEEEecCcccccchHHHHHHHHHHHH
Confidence            99999999999999999999888887753

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=99.96  E-value=2e-28  Score=236.76  Aligned_cols=162  Identities=14%  Similarity=0.143  Sum_probs=123.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (254)
                      .++|+++||++.|++..    +++++||+|.+|+++||+||||||||||+++|+|+++   |++|+ .+++.   ...|+
T Consensus       310 ~~~l~~~~l~~~y~~~~----il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~---p~~G~i~~~~~---~~igy  379 (638)
T PRK10636        310 NPLLKMEKVSAGYGDRI----ILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELA---PVSGEIGLAKG---IKLGY  379 (638)
T ss_pred             CceEEEEeeEEEeCCee----eeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEEECCC---EEEEE
Confidence            35799999999998733    5699999999999999999999999999999999997   99999 44422   23454


Q ss_pred             EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (254)
Q Consensus       154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vl  230 (254)
                       +.++.........++.+++.      ..........+.++++.+++.   .+.++..|||||+||+++|++++.+|+||
T Consensus       380 -~~Q~~~~~l~~~~~~~~~~~------~~~~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lL  452 (638)
T PRK10636        380 -FAQHQLEFLRADESPLQHLA------RLAPQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLL  452 (638)
T ss_pred             -ecCcchhhCCccchHHHHHH------HhCchhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence             45432111111122222211      111122345677888888884   35678899999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHhhc
Q 025366          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       231 IlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||||++||+.+++.+.++|.+
T Consensus       453 lLDEPt~~LD~~~~~~l~~~L~~  475 (638)
T PRK10636        453 LLDEPTNHLDLDMRQALTEALID  475 (638)
T ss_pred             EEcCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999998864

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.96  E-value=7.9e-29  Score=197.35  Aligned_cols=173  Identities=18%  Similarity=0.169  Sum_probs=135.4

Q ss_pred             ceEEEecceeeccccc---ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-e--cCCCCC--
Q 025366           76 PVVEARCMDEVYDALA---QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S--FDSQVK--  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~---~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~--~~~~~~--  147 (254)
                      ..+.++|++|.|--..   -...+++++||+++.||+++|-||||+|||||+|+|.+.+.   |++|+ .  ..|+..  
T Consensus         3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~---~d~G~I~v~H~g~~vdl   79 (235)
T COG4778           3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYL---PDEGQILVRHEGEWVDL   79 (235)
T ss_pred             ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccC---CCCceEEEEeCcchhhh
Confidence            3588999999983211   23456799999999999999999999999999999999998   99999 2  333221  


Q ss_pred             ------------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC---CCCCCCCChh
Q 025366          148 ------------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHG  212 (254)
Q Consensus       148 ------------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G  212 (254)
                                  ..+.|+ +++.-..+++  ....+-........|++......+...++..|.+..   ...+..||||
T Consensus        80 ~~a~pr~vl~vRr~TiGy-VSQFLRviPR--V~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGG  156 (235)
T COG4778          80 VTAEPREVLEVRRTTIGY-VSQFLRVIPR--VSALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGG  156 (235)
T ss_pred             hccChHHHHHHHHhhhHH-HHHHHHhccC--cchHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCc
Confidence                        233454 4444333332  445555555555677776666677888999998874   5678899999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhcC
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~~  254 (254)
                      ++|||.|||.++.+.+||+|||||+.||..++.-+.++|.++
T Consensus       157 EqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~  198 (235)
T COG4778         157 EQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREA  198 (235)
T ss_pred             hheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHH
Confidence            999999999999999999999999999999999999999874

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=99.96  E-value=5.6e-28  Score=234.05  Aligned_cols=172  Identities=15%  Similarity=0.132  Sum_probs=133.9

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++++++|+++.|++......+++++||++++||+++|+|+||||||||+++|+|+++   |++|+ .++|....      
T Consensus         3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~---~~~G~i~~~g~~i~~~~~~~   79 (648)
T PRK10535          3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDK---PTSGTYRVAGQDVATLDADA   79 (648)
T ss_pred             cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEcCcCCHHH
Confidence            479999999999642111225699999999999999999999999999999999998   99999 67774321      


Q ss_pred             ------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       149 ------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia  220 (254)
                            ...++ +.++...+.  .+++.+++.+.....+...........++++.+++.  .+..+..||+||+||+++|
T Consensus        80 ~~~~~~~~i~~-v~q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LA  156 (648)
T PRK10535         80 LAQLRREHFGF-IFQRYHLLS--HLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIA  156 (648)
T ss_pred             HHHHHhccEEE-EeCCcccCC--CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHH
Confidence                  23444 555543222  257788776644333433333344567888888776  3567789999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++++.+|++||+|||+.+||+.+++.+.+++.+
T Consensus       157 raL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~  189 (648)
T PRK10535        157 RALMNGGQVILADEPTGALDSHSGEEVMAILHQ  189 (648)
T ss_pred             HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999864

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.96  E-value=3.3e-28  Score=216.01  Aligned_cols=174  Identities=17%  Similarity=0.216  Sum_probs=145.1

Q ss_pred             cceEEEecceeecccc-------cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC
Q 025366           75 IPVVEARCMDEVYDAL-------AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV  146 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~-------~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~  146 (254)
                      -+++++++|...|.-+       ...+.|++++||++++|+.+||+|.||||||||-+.|.+++    +..|+ .|+|+.
T Consensus       274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~----~s~G~I~F~G~~  349 (534)
T COG4172         274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLI----PSQGEIRFDGQD  349 (534)
T ss_pred             CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhc----CcCceEEECCcc
Confidence            4689999999998432       22366889999999999999999999999999999999999    67799 677753


Q ss_pred             CC----------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC--CCCccHHHHHHHHHhhccC---CCCCCCCCCh
Q 025366          147 KP----------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDH  211 (254)
Q Consensus       147 ~~----------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~--~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~  211 (254)
                      ..          ...-.++++|.|--.++.+++.+-+.+.....+-  .......++.++++.+++.   .++|+++|||
T Consensus       350 i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG  429 (534)
T COG4172         350 IDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG  429 (534)
T ss_pred             ccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence            21          1224568899887777778888877777766552  3344556778889999987   5789999999


Q ss_pred             hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |||||++||||++.+|++++|||||+.||...+.++.+++.
T Consensus       430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr  470 (534)
T COG4172         430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLR  470 (534)
T ss_pred             chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999985

>PRK13409 putative ATPase RIL; Provisional

Probab=99.95  E-value=4.2e-28  Score=232.07  Aligned_cols=158  Identities=13%  Similarity=0.118  Sum_probs=125.6

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (254)
                      .++++++|+++.|++.     .|+++||++++||+++|+||||||||||+|+|+|+++   |++|+ .++     ...++
T Consensus       338 ~~~l~~~~ls~~~~~~-----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~---p~~G~I~~~-----~~i~y  404 (590)
T PRK13409        338 ETLVEYPDLTKKLGDF-----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLK---PDEGEVDPE-----LKISY  404 (590)
T ss_pred             ceEEEEcceEEEECCE-----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEe-----eeEEE
Confidence            3579999999999762     3599999999999999999999999999999999997   99998 343     13444


Q ss_pred             EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (254)
Q Consensus       154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlI  231 (254)
                       +.++....  ..+++.+++......++     ......++++.+++.  .+.++.+|||||+|||++|++|+.+|++||
T Consensus       405 -~~Q~~~~~--~~~tv~e~l~~~~~~~~-----~~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llL  476 (590)
T PRK13409        405 -KPQYIKPD--YDGTVEDLLRSITDDLG-----SSYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYL  476 (590)
T ss_pred             -ecccccCC--CCCcHHHHHHHHhhhcC-----hHHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence             45543222  23678877665322111     123456788888775  467889999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHhhc
Q 025366          232 VDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       232 lDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||++||+.++..+.++|.+
T Consensus       477 LDEPt~~LD~~~~~~l~~~l~~  498 (590)
T PRK13409        477 LDEPSAHLDVEQRLAVAKAIRR  498 (590)
T ss_pred             EeCCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999998863

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.95  E-value=2.1e-28  Score=222.12  Aligned_cols=168  Identities=15%  Similarity=0.122  Sum_probs=133.5

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (254)
                      ++.+++++++|.|++..    |+++|||+|++|||.+|+|.||||||||+++|.|+++   |++|+ .++|+...     
T Consensus         2 ~~~l~~~~itK~f~~~~----And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~---P~~GeI~v~G~~v~~~sP~   74 (501)
T COG3845           2 EPALEMRGITKRFPGVV----ANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQ---PDSGEIRVDGKEVRIKSPR   74 (501)
T ss_pred             CceEEEeccEEEcCCEE----ecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCccc---CCcceEEECCEEeccCCHH
Confidence            46799999999999754    8999999999999999999999999999999999998   99999 67885432     


Q ss_pred             ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-C--CCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G--APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g--~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                          .-+|- +.|.-..++  .+|+.||+....... +  +.......++.++.+..++.  .+.++.+||-|+||||.|
T Consensus        75 dA~~~GIGM-VhQHF~Lv~--~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEI  151 (501)
T COG3845          75 DAIRLGIGM-VHQHFMLVP--TLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEI  151 (501)
T ss_pred             HHHHcCCcE-Eeecccccc--ccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHH
Confidence                22342 444332223  279999886644321 1  12223345567777777765  677889999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      .++|..++++|||||||+-|-|...+++.+++.
T Consensus       152 lKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~  184 (501)
T COG3845         152 LKALYRGARLLILDEPTAVLTPQEADELFEILR  184 (501)
T ss_pred             HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999888775

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=99.95  E-value=5.2e-28  Score=236.01  Aligned_cols=161  Identities=16%  Similarity=0.155  Sum_probs=127.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .++++||++.|++..+.  +|+|+||++++|+.++|+|+||||||||+|+|+|++.   |++|+ .++|...        
T Consensus       451 ~I~~~nvsf~Y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  525 (686)
T TIGR03797       451 AIEVDRVTFRYRPDGPL--ILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET---PESGSVFYDGQDLAGLDVQAV  525 (686)
T ss_pred             eEEEEEEEEEcCCCCcc--ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCEEEECCEEcCcCCHHHH
Confidence            58999999999643223  5699999999999999999999999999999999998   99999 6777432        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~  214 (254)
                      +...+. +.++.+.+.   -|+.||+..     +.+  .+.+++.++++..++.         .+..    ...||||||
T Consensus       526 r~~i~~-v~Q~~~lf~---gTI~eNi~~-----~~~--~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQr  594 (686)
T TIGR03797       526 RRQLGV-VLQNGRLMS---GSIFENIAG-----GAP--LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQR  594 (686)
T ss_pred             HhccEE-EccCCccCc---ccHHHHHhc-----CCC--CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence            234565 788876554   377777654     222  3456666666665543         2222    347999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|||++.+|++|||||||++||+.+.+++.+.+..
T Consensus       595 QRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~  633 (686)
T TIGR03797       595 QRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLER  633 (686)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988753

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=99.95  E-value=5e-28  Score=231.98  Aligned_cols=163  Identities=14%  Similarity=0.105  Sum_probs=126.6

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .++++||++.|++..+.  +++|+||++++|+.++|+|+||||||||+++|+|+++   |++|+ .++|...        
T Consensus       341 ~i~~~~vsf~y~~~~~~--il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~  415 (582)
T PRK11176        341 DIEFRNVTFTYPGKEVP--ALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYD---IDEGEILLDGHDLRDYTLASL  415 (582)
T ss_pred             eEEEEEEEEecCCCCCc--cccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccC---CCCceEEECCEEhhhcCHHHH
Confidence            59999999999753222  5699999999999999999999999999999999998   99999 6777432        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~  214 (254)
                      ....++ ++++.+.+.   -|+.+|+.+     +.+...+.+++.++++..++.         .+..    ...|||||+
T Consensus       416 ~~~i~~-v~Q~~~lf~---~Ti~~Ni~~-----~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqr  486 (582)
T PRK11176        416 RNQVAL-VSQNVHLFN---DTIANNIAY-----ARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR  486 (582)
T ss_pred             HhhceE-EccCceeec---chHHHHHhc-----CCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHH
Confidence            123454 788776554   367676643     223334556666666655432         2332    256999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|||+..+|+|||+||||++||+.+...+.+.+.+
T Consensus       487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~  525 (582)
T PRK11176        487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDE  525 (582)
T ss_pred             HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887753

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=99.95  E-value=6.3e-28  Score=211.05  Aligned_cols=159  Identities=14%  Similarity=0.191  Sum_probs=119.4

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (254)
                      |+++||++.|.+....  +|+++||+|++|++++|+|+||||||||+++|+|++    +++|+ .++|...        +
T Consensus         3 i~~~nls~~~~~~~~~--~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~----~~~G~I~i~g~~i~~~~~~~lr   76 (275)
T cd03289           3 MTVKDLTAKYTEGGNA--VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGDIQIDGVSWNSVPLQKWR   76 (275)
T ss_pred             EEEEEEEEEeCCCCCc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEhhhCCHHHHh
Confidence            7899999999532122  679999999999999999999999999999999998    67899 6676322        1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCC-----------CCCChhhhh
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYA-----------PSFDHGVGD  215 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~-----------~~lS~G~~q  215 (254)
                      ...++ +.++...+ .  .++.+|+..    ++   ....+.+.++++.+++..  +..+           ..||+||+|
T Consensus        77 ~~i~~-v~q~~~lf-~--~tv~~nl~~----~~---~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~q  145 (275)
T cd03289          77 KAFGV-IPQKVFIF-S--GTFRKNLDP----YG---KWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQ  145 (275)
T ss_pred             hhEEE-ECCCcccc-h--hhHHHHhhh----cc---CCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHH
Confidence            23443 55554322 2  255555532    11   123455667777776642  2222           249999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|+|++.+|+|||+||||++||+..++.+.++|.+
T Consensus       146 rl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~  183 (275)
T cd03289         146 LMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQ  183 (275)
T ss_pred             HHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988864

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=99.95  E-value=1e-27  Score=207.93  Aligned_cols=164  Identities=13%  Similarity=0.073  Sum_probs=116.8

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (254)
                      .+..++++++++.|++....  +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...     
T Consensus        16 ~~~~i~~~~l~~~~~~~~~~--il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~~~G~i~i~g~~i~~~~~   90 (257)
T cd03288          16 LGGEIKIHDLCVRYENNLKP--VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD---IFDGKIVIDGIDISKLPL   90 (257)
T ss_pred             CCceEEEEEEEEEeCCCCCc--ceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccC---CCCCeEEECCEEhhhCCH
Confidence            35679999999999762112  6799999999999999999999999999999999997   99999 6666322     


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHH---------HHhh--ccC--CCCCCCCCCh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---------LKNL--RNQ--GSVYAPSFDH  211 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~---------l~~l--~l~--~~~~~~~lS~  211 (254)
                         ....++ +.++.. ++.  .++.++..       .........+...         ++.+  ++.  .......||+
T Consensus        91 ~~~~~~i~~-v~q~~~-l~~--~tv~~nl~-------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~  159 (257)
T cd03288          91 HTLRSRLSI-ILQDPI-LFS--GSIRFNLD-------PECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSV  159 (257)
T ss_pred             HHHhhhEEE-ECCCCc-ccc--cHHHHhcC-------cCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCH
Confidence               122343 444432 221  24433321       1111111122222         2222  111  2234578999


Q ss_pred             hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+||+++|+|++.+|++||+||||++||+..++.+.+++++
T Consensus       160 G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~  201 (257)
T cd03288         160 GQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMT  201 (257)
T ss_pred             HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998864

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=99.95  E-value=8.5e-28  Score=207.19  Aligned_cols=143  Identities=15%  Similarity=0.166  Sum_probs=106.6

Q ss_pred             ccceeeee-----CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEeeCCCCCCCCcCCChh
Q 025366           97 TSALASNV-----NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAM  170 (254)
Q Consensus        97 l~~vsl~i-----~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~  170 (254)
                      +.+++|++     ++|++++|+||||||||||+++|+|+++   |++|+ .+++.    ..++ +.++....+  ..++.
T Consensus        10 ~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~---p~~G~i~~~g~----~i~~-~~q~~~~~~--~~tv~   79 (246)
T cd03237          10 LGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLK---PDEGDIEIELD----TVSY-KPQYIKADY--EGTVR   79 (246)
T ss_pred             cCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCCeEEECCc----eEEE-ecccccCCC--CCCHH
Confidence            35566655     4799999999999999999999999997   99999 55553    2343 444322111  25777


Q ss_pred             hcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 025366          171 EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (254)
Q Consensus       171 e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~  248 (254)
                      +++.......+    .......++++.+++.  .+..+..||+||+||+++|++|+.+|+++|+||||++||+..+..+.
T Consensus        80 e~l~~~~~~~~----~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~  155 (246)
T cd03237          80 DLLSSITKDFY----THPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS  155 (246)
T ss_pred             HHHHHHhhhcc----ccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHH
Confidence            76644322111    1122345677777765  45678899999999999999999999999999999999999999999


Q ss_pred             HHhhc
Q 025366          249 SMFDE  253 (254)
Q Consensus       249 ~ll~~  253 (254)
                      ++|.+
T Consensus       156 ~~l~~  160 (246)
T cd03237         156 KVIRR  160 (246)
T ss_pred             HHHHH
Confidence            88754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=99.95  E-value=4.7e-28  Score=227.96  Aligned_cols=167  Identities=13%  Similarity=0.134  Sum_probs=121.3

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++|+++||++.|.    .  +++++||++++|+++||+||||||||||+++|+|+++   |++|+ .++|....      
T Consensus       249 ~~i~~~~l~~~~~----~--~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~i~~~~~~~  319 (491)
T PRK10982        249 VILEVRNLTSLRQ----P--SIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIRE---KSAGTITLHGKKINNHNANE  319 (491)
T ss_pred             cEEEEeCcccccC----c--ccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCc---CCccEEEECCEECCCCCHHH
Confidence            4799999999852    2  6799999999999999999999999999999999997   99999 56663221      


Q ss_pred             ---CCeEEEeeCCCC--CCCCcCCChhhc-----HHHHHHHcCC-CCCccHHHHHHHHHhhccC---CCCCCCCCChhhh
Q 025366          149 ---PDVATVLPMDGF--HLYLSQLDAMED-----PKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG  214 (254)
Q Consensus       149 ---~~~g~~i~~~~~--~~~~~~l~~~e~-----~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~  214 (254)
                         ...++ +.++..  .++ +.++..++     +......++. ..........++++.+++.   .+.++.+|||||+
T Consensus       320 ~~~~~i~~-~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~  397 (491)
T PRK10982        320 AINHGFAL-VTEERRSTGIY-AYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQ  397 (491)
T ss_pred             HHHCCCEE-cCCchhhCCcc-cCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHH
Confidence               11333 444321  111 12343333     1111111121 1111234456778877773   4678889999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|++++.+|+||||||||++||+.+++.+.+++.+
T Consensus       398 qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~  436 (491)
T PRK10982        398 QKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAE  436 (491)
T ss_pred             HHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHH
Confidence            999999999999999999999999999999999998853

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.95  E-value=2.7e-28  Score=196.49  Aligned_cols=175  Identities=14%  Similarity=0.122  Sum_probs=133.4

Q ss_pred             cceEEEecceeeccccc-----ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-
Q 025366           75 IPVVEARCMDEVYDALA-----QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~-----~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-  147 (254)
                      |++++++|++|.|....     ..+.|++.|||++++|+.++|+|.||||||||.|+|+|.+.   |++|+ .++++.. 
T Consensus         2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~---PTsG~il~n~~~L~   78 (267)
T COG4167           2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE---PTSGEILINDHPLH   78 (267)
T ss_pred             cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccC---CCCceEEECCcccc
Confidence            67899999999985521     34568899999999999999999999999999999999998   99999 6776532 


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-CCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhH
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv  217 (254)
                            +.....+|.+|...-.++.+.+..-+....+..- +.......++.+.+..+++.   .+.++..+|-||||||
T Consensus        79 ~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRV  158 (267)
T COG4167          79 FGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRV  158 (267)
T ss_pred             ccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHH
Confidence                  2334456777766555444443332222222211 22222234556667777765   5788999999999999


Q ss_pred             hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ++||||+.+|+|||.||..++||...+-++.+++-
T Consensus       159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~L  193 (267)
T COG4167         159 ALARALILRPKIIIADEALASLDMSMRSQLINLML  193 (267)
T ss_pred             HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHH
Confidence            99999999999999999999999999999998864

>PLN03211 ABC transporter G-25; Provisional

Probab=99.95  E-value=5.2e-28  Score=234.03  Aligned_cols=164  Identities=14%  Similarity=0.100  Sum_probs=127.6

Q ss_pred             EEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC--Cce-ecCCCCC----CCCe
Q 025366           79 EARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ--KAS-SFDSQVK----PPDV  151 (254)
Q Consensus        79 ~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~--~G~-~~~~~~~----~~~~  151 (254)
                      .++++++.|+++.    +|+|+|+++++||++||+||||||||||+++|+|+++   |+  +|+ .++|...    ....
T Consensus        70 ~~~~l~~~~~~~~----iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~---~~~~sG~I~inG~~~~~~~~~~i  142 (659)
T PLN03211         70 KISDETRQIQERT----ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQ---GNNFTGTILANNRKPTKQILKRT  142 (659)
T ss_pred             ccccccccCCCCe----eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCC---CCceeEEEEECCEECchhhccce
Confidence            3567889998743    6699999999999999999999999999999999986   64  899 6777432    2234


Q ss_pred             EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC----ccHHHHHHHHHhhccCC-------CCCCCCCChhhhhhHhhh
Q 025366          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----FNPLLLLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~----~~~~~~~~~l~~l~l~~-------~~~~~~lS~G~~qrv~ia  220 (254)
                      ++ +.+++....  .+++.|++.+.... ..+..    .....+.++++.+++..       +..+..||||||||+++|
T Consensus       143 ~y-v~Q~~~l~~--~lTV~E~l~~~a~~-~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia  218 (659)
T PLN03211        143 GF-VTQDDILYP--HLTVRETLVFCSLL-RLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIA  218 (659)
T ss_pred             EE-ECcccccCC--cCCHHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHH
Confidence            54 666654433  27899988775432 22211    12244677888888753       335678999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|+.+|+|||+||||++||...+..+.+++.+
T Consensus       219 ~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~  251 (659)
T PLN03211        219 HEMLINPSLLILDEPTSGLDATAAYRLVLTLGS  251 (659)
T ss_pred             HHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998863

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=99.95  E-value=7.7e-28  Score=235.62  Aligned_cols=163  Identities=20%  Similarity=0.165  Sum_probs=127.6

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..|+++||++.|++..+.  +|+|+||++++|+.++|+|+||||||||+++|+|++.   |++|+ .++|...       
T Consensus       476 ~~I~~~~vsf~y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~  550 (710)
T TIGR03796       476 GYVELRNITFGYSPLEPP--LIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ---PWSGEILFDGIPREEIPREV  550 (710)
T ss_pred             CeEEEEEEEEecCCCCCC--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEeHHHCCHHH
Confidence            358999999999863233  5699999999999999999999999999999999998   99999 6777422       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~  213 (254)
                       +...++ +.++.+.+.   -++.+|+..     +.+ ..+.+++.++++..++.         .+.    ....|||||
T Consensus       551 lr~~i~~-v~Q~~~lf~---gTi~eNi~l-----~~~-~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQ  620 (710)
T TIGR03796       551 LANSVAM-VDQDIFLFE---GTVRDNLTL-----WDP-TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQ  620 (710)
T ss_pred             HHhheeE-EecCChhhh---ccHHHHhhC-----CCC-CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHH
Confidence             234565 788876554   377776643     212 23456666666655442         222    235799999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||+++|||++.+|++|||||||++||+...+++.+.+.+
T Consensus       621 rQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~  660 (710)
T TIGR03796       621 RQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR  660 (710)
T ss_pred             HHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999988753

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=99.95  E-value=6.8e-28  Score=227.37  Aligned_cols=164  Identities=13%  Similarity=0.113  Sum_probs=125.4

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ++++++||++     .    +++++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...       
T Consensus       256 ~~l~~~~l~~-----~----~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~---p~~G~I~~~g~~i~~~~~~~  323 (501)
T PRK10762        256 VRLKVDNLSG-----P----GVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALP---RTSGYVTLDGHEVVTRSPQD  323 (501)
T ss_pred             cEEEEeCccc-----C----CcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCCCCHHH
Confidence            5799999984     1    5699999999999999999999999999999999997   99999 5666321       


Q ss_pred             --CCCeEEEeeCCCC--CCCCcCCChhhcHHHHHH-Hc----C-CCCCccHHHHHHHHHhhccC---CCCCCCCCChhhh
Q 025366          148 --PPDVATVLPMDGF--HLYLSQLDAMEDPKEAHA-RR----G-APWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVG  214 (254)
Q Consensus       148 --~~~~g~~i~~~~~--~~~~~~l~~~e~~~~~~~-~~----g-~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~  214 (254)
                        ....++ +.++..  .+. ..+++.+++.+... ..    + .........+.++++.+++.   .+.++..|||||+
T Consensus       324 ~~~~~i~~-v~q~~~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGek  401 (501)
T PRK10762        324 GLANGIVY-ISEDRKRDGLV-LGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQ  401 (501)
T ss_pred             HHHCCCEE-ecCccccCCCc-CCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHH
Confidence              123455 555531  121 23677777754321 11    1 11111234567888888883   4677889999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|++++.+|++|||||||++||+..++.+.++|.+
T Consensus       402 qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  440 (501)
T PRK10762        402 QKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQ  440 (501)
T ss_pred             HHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence            999999999999999999999999999999999998864

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=9.3e-28  Score=192.05  Aligned_cols=170  Identities=15%  Similarity=0.166  Sum_probs=129.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecC---CCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD---SQV----  146 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~---~~~----  146 (254)
                      .|++++.+++|.|+...    ..++|||++.+||+.||+|.||||||||+++|++.+.   |+.|+ .+.   ++.    
T Consensus         4 ~PLL~V~~lsk~Yg~~~----gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~---p~~G~v~Y~~r~~~~~dl~   76 (258)
T COG4107           4 KPLLSVSGLSKLYGPGK----GCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLT---PDAGTVTYRMRDGQPRDLY   76 (258)
T ss_pred             CcceeehhhhhhhCCCc----CccccceeecCCcEEEEEecCCCcHHhHHHHHhcccC---CCCCeEEEEcCCCCchhHh
Confidence            46899999999999865    6799999999999999999999999999999999998   99999 332   221    


Q ss_pred             ----------CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCC---CCCCCCCChh
Q 025366          147 ----------KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHG  212 (254)
Q Consensus       147 ----------~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G  212 (254)
                                .+.++|. +.++..+-.+...++-.|+-+.....|. -.........+.++.+.+..   +-.+..||||
T Consensus        77 ~msEaeRR~L~RTeWG~-VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGG  155 (258)
T COG4107          77 TMSEAERRRLLRTEWGF-VHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGG  155 (258)
T ss_pred             hhchHHHHHHhhhccce-eecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchH
Confidence                      1345665 5655443333223444444443333332 11123455677888887763   4567899999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |+||+.||+.++..|+++++||||.|||...+..+.+++.
T Consensus       156 MqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllr  195 (258)
T COG4107         156 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLR  195 (258)
T ss_pred             HHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHH
Confidence            9999999999999999999999999999999999998874

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=99.95  E-value=7e-28  Score=227.31  Aligned_cols=166  Identities=14%  Similarity=0.130  Sum_probs=123.6

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      +.+++++++..    .    +++++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|+...      
T Consensus       256 ~~l~~~~~~~~----~----~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~---p~~G~i~~~g~~~~~~~~~~  324 (501)
T PRK11288        256 VRLRLDGLKGP----G----LREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR---RTAGQVYLDGKPIDIRSPRD  324 (501)
T ss_pred             cEEEEeccccC----C----cccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCc---CCCceEEECCEECCCCCHHH
Confidence            46899999732    1    5699999999999999999999999999999999997   99999 56664221      


Q ss_pred             ---CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHc----CC--CCCccHHHHHHHHHhhccC---CCCCCCCCChhhhh
Q 025366          149 ---PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARR----GA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD  215 (254)
Q Consensus       149 ---~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~----g~--~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q  215 (254)
                         ...++ +.++.. ......+++.+++.+.....    +.  ..........++++.+++.   .+.++..|||||||
T Consensus       325 ~~~~~i~~-~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~q  403 (501)
T PRK11288        325 AIRAGIML-CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQ  403 (501)
T ss_pred             HHhCCCEE-cCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHH
Confidence               22343 455421 01112257777765422111    10  1111224567888888873   46778899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|++++.+|+||||||||++||+.+++++.++|++
T Consensus       404 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  441 (501)
T PRK11288        404 KAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYE  441 (501)
T ss_pred             HHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHH
Confidence            99999999999999999999999999999999998753

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=99.95  E-value=1.5e-27  Score=226.25  Aligned_cols=162  Identities=17%  Similarity=0.167  Sum_probs=125.8

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .++++||++.|++..+.  +++|+||++++|+.++|+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus       320 ~i~~~~v~f~y~~~~~~--il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~I~~~g~~i~~~~~~~l  394 (529)
T TIGR02857       320 SLEFSGLSVAYPGRRAP--ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVD---PTEGSIAVNGVPLADADADSW  394 (529)
T ss_pred             eEEEEEEEEECCCCCcc--cccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEehhhCCHHHH
Confidence            59999999999763223  5699999999999999999999999999999999998   99999 6676432        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~  214 (254)
                      +...+. +.++.+.+.   .++.+|+.+.     .+ ....+.+.++++..++.         .+.    ....||||||
T Consensus       395 r~~i~~-v~Q~~~lf~---~ti~~Ni~~~-----~~-~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~  464 (529)
T TIGR02857       395 RDQIAW-VPQHPFLFA---GTIAENIRLA-----RP-DASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQA  464 (529)
T ss_pred             HhheEE-EcCCCcccC---cCHHHHHhcc-----CC-CCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHH
Confidence            123454 777765443   4777776542     12 12345555666555442         222    3457999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|||++.+|+++|+||||++||+...+.+.+.+.+
T Consensus       465 qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~  503 (529)
T TIGR02857       465 QRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRA  503 (529)
T ss_pred             HHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888754

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.95  E-value=2.2e-28  Score=241.86  Aligned_cols=164  Identities=17%  Similarity=0.177  Sum_probs=127.5

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..++++||.++|+.++ .+.+|+++||.|++|+.++|+|||||||||++++|.+++.   |++|+ .+||...       
T Consensus       349 g~ief~nV~FsYPsRp-dv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~Rfyd---P~~G~V~idG~di~~~~~~~  424 (1228)
T KOG0055|consen  349 GEIEFRNVCFSYPSRP-DVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYD---PTSGEVLIDGEDIRNLNLKW  424 (1228)
T ss_pred             cceEEEEEEecCCCCC-cchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCceEEEcCccchhcchHH
Confidence            3699999999999864 4557899999999999999999999999999999999998   99999 6787542       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHH---------hhccCCCC----CCCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGSV----YAPSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~l~~~~----~~~~lS~G~  213 (254)
                       +..+|. |.+....+.   .++.||+.+     |-+. ...+++.++.+         .+-.+.+.    .-.+|||||
T Consensus       425 lr~~igl-V~QePvlF~---~tI~eNI~~-----G~~d-at~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~qLSGGQ  494 (1228)
T KOG0055|consen  425 LRSQIGL-VSQEPVLFA---TTIRENIRY-----GKPD-ATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQLSGGQ  494 (1228)
T ss_pred             HHhhcCe-eeechhhhc---ccHHHHHhc-----CCCc-ccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCCCChHH
Confidence             345665 677663332   577887754     3322 22333333332         22222222    234699999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||++|||||+.+|+||||||||++||+.+.+.+.+.||.
T Consensus       495 KQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~  534 (1228)
T KOG0055|consen  495 KQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDK  534 (1228)
T ss_pred             HHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999875

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=99.95  E-value=7.8e-28  Score=203.20  Aligned_cols=143  Identities=15%  Similarity=0.179  Sum_probs=106.6

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-e-cCCCCCCCCeEEEeeCCCCCCCCcCCChhhcH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-S-FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDP  173 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~-~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~  173 (254)
                      +++|+||++++|++++|+||||||||||+++|+|+++   |++|+ . +++....      +.....  ..+.+++.+++
T Consensus         2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~---~~sG~i~~~~~~~~~------~~~~~~--l~~~ltv~enl   70 (213)
T PRK15177          2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDA---PDEGDFIGLRGDALP------LGANSF--ILPGLTGEENA   70 (213)
T ss_pred             eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCCCEEEecCceec------cccccc--cCCcCcHHHHH
Confidence            5799999999999999999999999999999999997   99998 3 4443211      111111  12236888888


Q ss_pred             HHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          174 KEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       174 ~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      .+....++....   .....+.+.+++.  .+..+..||+||+||+++|++++.+|+++|+|||++++|+..++.+.+++
T Consensus        71 ~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l  147 (213)
T PRK15177         71 RMMASLYGLDGD---EFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAAL  147 (213)
T ss_pred             HHHHHHcCCCHH---HHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHH
Confidence            776554443211   1111222323332  46678899999999999999999999999999999999999999988866


Q ss_pred             h
Q 025366          252 D  252 (254)
Q Consensus       252 ~  252 (254)
                      .
T Consensus       148 ~  148 (213)
T PRK15177        148 A  148 (213)
T ss_pred             H
Confidence            3

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.95  E-value=9.1e-28  Score=229.91  Aligned_cols=163  Identities=16%  Similarity=0.158  Sum_probs=127.3

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..++++||++.|++..+.  +|+|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus       337 ~~i~~~~v~f~y~~~~~~--il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---p~~G~I~i~g~~i~~~~~~~  411 (574)
T PRK11160        337 VSLTLNNVSFTYPDQPQP--VLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD---PQQGEILLNGQPIADYSEAA  411 (574)
T ss_pred             CeEEEEEEEEECCCCCCc--ceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHH
Confidence            359999999999753223  5699999999999999999999999999999999998   99999 6776422       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--------CC----CCCCCChhhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--------SV----YAPSFDHGVG  214 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--------~~----~~~~lS~G~~  214 (254)
                       +...+. +.++.+.+.   -+..+|+.+.     .+ ..+.+.+.++++..++..        +.    ....||||||
T Consensus       412 ~r~~i~~-v~Q~~~lf~---~ti~~Ni~~~-----~~-~~~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqr  481 (574)
T PRK11160        412 LRQAISV-VSQRVHLFS---ATLRDNLLLA-----AP-NASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQ  481 (574)
T ss_pred             HHhheeE-Ecccchhhc---ccHHHHhhcC-----CC-ccCHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHH
Confidence             123454 777765443   3666666432     22 234566777777766542        11    2357999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|||++.+|++||+||||++||+.+.+.+.+.+.+
T Consensus       482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~  520 (574)
T PRK11160        482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAE  520 (574)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988753

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=99.95  E-value=2.2e-27  Score=201.73  Aligned_cols=148  Identities=17%  Similarity=0.200  Sum_probs=110.3

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCeEEEeeCCCCCCCCcCCChhhcHHHHH
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~  177 (254)
                      |++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...   ....++ +.++........+++.+++.+..
T Consensus         1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~---~~~G~i~~~g~~~~~~~~~i~~-v~q~~~~~~~~~~tv~~~l~~~~   76 (223)
T TIGR03771         1 LSADKGELLGLLGPNGAGKTTLLRAILGLIP---PAKGTVKVAGASPGKGWRHIGY-VPQRHEFAWDFPISVAHTVMSGR   76 (223)
T ss_pred             CccCCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCccchHhhCcEEE-ecccccccCCCCccHHHHHHhcc
Confidence            5788999999999999999999999999997   99999 6777532   223454 55543322211246666664421


Q ss_pred             HH-cCC---CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          178 AR-RGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       178 ~~-~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      .. .+.   ........+.++++.+++.  .+..+..||+||+||+++|++++.+|++||+||||++||+.+++.+.+++
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l  156 (223)
T TIGR03771        77 TGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELF  156 (223)
T ss_pred             ccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            11 111   1112234567788888776  35677899999999999999999999999999999999999999999988


Q ss_pred             hc
Q 025366          252 DE  253 (254)
Q Consensus       252 ~~  253 (254)
                      .+
T Consensus       157 ~~  158 (223)
T TIGR03771       157 IE  158 (223)
T ss_pred             HH
Confidence            63

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=99.95  E-value=2.1e-27  Score=227.91  Aligned_cols=160  Identities=14%  Similarity=0.110  Sum_probs=123.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      -++++||++.|.+. +.  +|+|+||++++|+.++|+|+||||||||+++|+|++    |++|+ .++|...        
T Consensus       349 ~i~~~~vsf~~~~~-~~--vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~----p~~G~I~i~g~~i~~~~~~~l  421 (588)
T PRK11174        349 TIEAEDLEILSPDG-KT--LAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL----PYQGSLKINGIELRELDPESW  421 (588)
T ss_pred             eEEEEeeEEeccCC-Ce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC----CCCcEEEECCEecccCCHHHH
Confidence            49999999766432 23  569999999999999999999999999999999998    88999 6777322        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCCC----CCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVY----APSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~----~~~lS~G~~  214 (254)
                      +...++ ++++.+.+.   -|+.+|+.+.     .+ +.+.+++.++++..++         +.+..    -..||||||
T Consensus       422 r~~i~~-v~Q~~~LF~---~TI~eNI~~g-----~~-~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQr  491 (588)
T PRK11174        422 RKHLSW-VGQNPQLPH---GTLRDNVLLG-----NP-DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQA  491 (588)
T ss_pred             HhheEE-ecCCCcCCC---cCHHHHhhcC-----CC-CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHH
Confidence            223454 788876554   4777777542     12 2345556555555443         23333    346999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|||++.+|+||||||||++||..+.+.+.+.+.+
T Consensus       492 QRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~  530 (588)
T PRK11174        492 QRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNA  530 (588)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887753

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=99.95  E-value=2e-27  Score=232.66  Aligned_cols=161  Identities=15%  Similarity=0.070  Sum_probs=125.0

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .|+++||++.|++. +.  +|+|+||++++|+.++|+|+||||||||+++|+|++.   |++|+ .++|...        
T Consensus       473 ~I~~~~vsf~y~~~-~~--iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~---p~~G~I~idg~~i~~~~~~~l  546 (708)
T TIGR01193       473 DIVINDVSYSYGYG-SN--ILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ---ARSGEILLNGFSLKDIDRHTL  546 (708)
T ss_pred             cEEEEEEEEEcCCC-Cc--ceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCC---CCCcEEEECCEEHHHcCHHHH
Confidence            58999999999742 23  5699999999999999999999999999999999998   99999 6777321        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCC----CCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~  214 (254)
                      +...++ +.++.+.+.   -|+.+|+.+.     .....+.+++.++++..++         +.+.    ....||||||
T Consensus       547 r~~i~~-v~Q~~~lf~---gTI~eNi~l~-----~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQr  617 (708)
T TIGR01193       547 RQFINY-LPQEPYIFS---GSILENLLLG-----AKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQK  617 (708)
T ss_pred             HHheEE-EecCceehh---HHHHHHHhcc-----CCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHH
Confidence            234565 788876544   3677776542     1112344555555554443         2232    2357999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ||+++|||++.+|++|||||||++||+.+.+.+.+.+.
T Consensus       618 QRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~  655 (708)
T TIGR01193       618 QRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLL  655 (708)
T ss_pred             HHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988775

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=99.95  E-value=2.1e-27  Score=224.46  Aligned_cols=164  Identities=19%  Similarity=0.182  Sum_probs=121.9

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++++++|+++   .      +++++||++++|++++|+||||||||||+|+|+|+++   |++|+ .+++....      
T Consensus       267 ~~l~~~~l~~---~------~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~---p~~G~i~~~g~~i~~~~~~~  334 (510)
T PRK15439        267 PVLTVEDLTG---E------GFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRP---ARGGRIMLNGKEINALSTAQ  334 (510)
T ss_pred             ceEEEeCCCC---C------CccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC---CCCcEEEECCEECCCCCHHH
Confidence            4799999983   1      4699999999999999999999999999999999997   99999 56664221      


Q ss_pred             ---CCeEEEeeCCC--CCCCCcCCChhhcHHHHH-HHcCC--CCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhH
Q 025366          149 ---PDVATVLPMDG--FHLYLSQLDAMEDPKEAH-ARRGA--PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (254)
Q Consensus       149 ---~~~g~~i~~~~--~~~~~~~l~~~e~~~~~~-~~~g~--~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv  217 (254)
                         ...++ +.++.  ..++ ..+++.++..... .....  ........+.++++.+++.   .+.++..||||||||+
T Consensus       335 ~~~~~i~~-v~q~~~~~~l~-~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl  412 (510)
T PRK15439        335 RLARGLVY-LPEDRQSSGLY-LDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKV  412 (510)
T ss_pred             HHhCCcEE-CCCChhhCCcc-CCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHH
Confidence               12343 44432  1122 1246666653211 11111  1111223467888888874   3677889999999999


Q ss_pred             hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|++++.+|+||||||||++||+.+++.+.++|.+
T Consensus       413 ~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~  448 (510)
T PRK15439        413 LIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRS  448 (510)
T ss_pred             HHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHH
Confidence            999999999999999999999999999999998864

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=99.95  E-value=2.2e-27  Score=231.82  Aligned_cols=163  Identities=15%  Similarity=0.135  Sum_probs=126.1

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..|+++||++.|++..+.  +|+|+||++++|+.++|+|+||||||||+++|+|+++   |++|+ .++|...       
T Consensus       462 ~~I~~~~vsf~Y~~~~~~--vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~---p~~G~I~idg~~l~~~~~~~  536 (694)
T TIGR03375       462 GEIEFRNVSFAYPGQETP--ALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ---PTEGSVLLDGVDIRQIDPAD  536 (694)
T ss_pred             ceEEEEEEEEEeCCCCcc--ceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEEhhhCCHHH
Confidence            358999999999753223  5699999999999999999999999999999999998   99999 6776322       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~  213 (254)
                       +...++ +.++.+.+.   -|+.+|+.+.     .+ ..+.+++.++++..++.         .+.    ....|||||
T Consensus       537 lr~~i~~-v~Q~~~lf~---~TI~eNi~~~-----~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ  606 (694)
T TIGR03375       537 LRRNIGY-VPQDPRLFY---GTLRDNIALG-----AP-YADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ  606 (694)
T ss_pred             HHhccEE-ECCChhhhh---hhHHHHHhCC-----CC-CCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence             234554 777776543   3677766432     12 23455666666655432         222    234799999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||+++|||++.+|+++||||||++||+.+.+++.+.+.+
T Consensus       607 rQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~  646 (694)
T TIGR03375       607 RQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKR  646 (694)
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999888753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.7e-27  Score=195.83  Aligned_cols=166  Identities=13%  Similarity=0.146  Sum_probs=119.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---C----
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---P----  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~----  148 (254)
                      ||+++||++...++.    ++++++|++.+||+++|+||||||||||+|.|+|.+.   |++|+ .++|...   +    
T Consensus         1 mi~a~nls~~~~Gr~----ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~---p~~G~v~~~g~~l~~~~~~~l   73 (259)
T COG4559           1 MIRAENLSYSLAGRR----LLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELS---PDSGEVTLNGVPLNSWPPEEL   73 (259)
T ss_pred             CeeeeeeEEEeecce----eccCcceeccCCcEEEEECCCCccHHHHHHHhhCccC---CCCCeEeeCCcChhhCCHHHH
Confidence            588999999998844    5699999999999999999999999999999999997   99999 5565322   1    


Q ss_pred             -CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC--ccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT--FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       149 -~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~--~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                       ...+. ..++...-+.  .++.|-+...+.-.+....  .+..-...++...++.  ..+....||||++|||.+||.|
T Consensus        74 A~~raV-lpQ~s~laFp--Ftv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvL  150 (259)
T COG4559          74 ARHRAV-LPQNSSLAFP--FTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVL  150 (259)
T ss_pred             HHHhhh-cccCcccccc--eEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHH
Confidence             11232 4444322222  3666655544332222222  2222356666666554  4566789999999999999998


Q ss_pred             c------CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          224 G------LQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       224 ~------~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +      .++++|+|||||+.||...+..+.++..
T Consensus       151 aQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR  185 (259)
T COG4559         151 AQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLAR  185 (259)
T ss_pred             HHccCCCCCCceEEecCCccccchHHHHHHHHHHH
Confidence            4      2335899999999999999988877653

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=99.95  E-value=1.6e-27  Score=195.56  Aligned_cols=112  Identities=17%  Similarity=0.186  Sum_probs=90.2

Q ss_pred             ecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCC
Q 025366           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGF  160 (254)
Q Consensus        81 ~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~  160 (254)
                      .||++.|++..    +++++ |++++|++++|+||||||||||+|+|+|+++   |++|+              |.+++.
T Consensus         4 ~~l~~~~~~~~----~l~~~-~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~--------------i~~~g~   61 (177)
T cd03222           4 PDCVKRYGVFF----LLVEL-GVVKEGEVIGIVGPNGTGKTTAVKILAGQLI---PNGDN--------------DEWDGI   61 (177)
T ss_pred             CCeEEEECCEE----EEccC-cEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCcE--------------EEECCE
Confidence            58899998743    45774 9999999999999999999999999999996   66665              222221


Q ss_pred             CCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCC
Q 025366          161 HLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFL  239 (254)
Q Consensus       161 ~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~l  239 (254)
                      .+                  ++ ++...                     ||+||+||+++|++++.+|+++|+||||++|
T Consensus        62 ~i------------------~~~~q~~~---------------------LSgGq~qrv~laral~~~p~lllLDEPts~L  102 (177)
T cd03222          62 TP------------------VYKPQYID---------------------LSGGELQRVAIAAALLRNATFYLFDEPSAYL  102 (177)
T ss_pred             EE------------------EEEcccCC---------------------CCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence            00                  00 11000                     9999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHhhc
Q 025366          240 DGGVWKDVSSMFDE  253 (254)
Q Consensus       240 D~~~~~~l~~ll~~  253 (254)
                      |+..++.+.+++.+
T Consensus       103 D~~~~~~l~~~l~~  116 (177)
T cd03222         103 DIEQRLNAARAIRR  116 (177)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999888753

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=99.95  E-value=3.2e-27  Score=225.90  Aligned_cols=163  Identities=17%  Similarity=0.120  Sum_probs=125.6

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      -++++||++.|++..+.  +++|+||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...        
T Consensus       330 ~i~~~~v~f~y~~~~~~--il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---~~~G~I~i~g~~i~~~~~~~~  404 (571)
T TIGR02203       330 DVEFRNVTFRYPGRDRP--ALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYE---PDSGQILLDGHDLADYTLASL  404 (571)
T ss_pred             eEEEEEEEEEcCCCCCc--cccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCeEEECCEeHHhcCHHHH
Confidence            58999999999763233  5699999999999999999999999999999999998   99999 6666321        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~  214 (254)
                      ....++ ++++.+.+.   -+..+|+..     +.+.+.+.+++.++++.+++.         .+..    -..||||||
T Consensus       405 ~~~i~~-v~Q~~~lf~---~Ti~~Ni~~-----~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqr  475 (571)
T TIGR02203       405 RRQVAL-VSQDVVLFN---DTIANNIAY-----GRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQR  475 (571)
T ss_pred             HhhceE-EccCccccc---ccHHHHHhc-----CCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHH
Confidence            123444 777776543   366666543     212234556666666665542         2222    246999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++||+++.+|+|+||||||++||+.+.+.+.+.|..
T Consensus       476 QRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~  514 (571)
T TIGR02203       476 QRLAIARALLKDAPILILDEATSALDNESERLVQAALER  514 (571)
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999887753

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.95  E-value=3.1e-27  Score=226.96  Aligned_cols=159  Identities=14%  Similarity=0.145  Sum_probs=125.7

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .++++++++.|++. +.  +++|+||++++|+.++|+|+||||||||+++|+|++.   |++|+ .++|...        
T Consensus       340 ~i~~~~v~f~y~~~-~~--il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~l  413 (592)
T PRK10790        340 RIDIDNVSFAYRDD-NL--VLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYP---LTEGEIRLDGRPLSSLSHSVL  413 (592)
T ss_pred             eEEEEEEEEEeCCC-Cc--eeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccC---CCCceEEECCEEhhhCCHHHH
Confidence            48999999999752 22  5699999999999999999999999999999999998   99999 6777422        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~  214 (254)
                      ....+. ++++.+.+.   -|+.+|+.+..       ..+.+++.++++.+++.         .+.    ....|||||+
T Consensus       414 ~~~i~~-v~Q~~~lF~---~Ti~~NI~~~~-------~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr  482 (592)
T PRK10790        414 RQGVAM-VQQDPVVLA---DTFLANVTLGR-------DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK  482 (592)
T ss_pred             HhheEE-EccCCcccc---chHHHHHHhCC-------CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence            233454 788876554   37777775421       23455666666665543         222    2346999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ||+++|||++.+|+|||+||||++||+.+.+.+.+.+.
T Consensus       483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~  520 (592)
T PRK10790        483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALA  520 (592)
T ss_pred             HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988775

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=99.95  E-value=3.6e-27  Score=228.71  Aligned_cols=165  Identities=12%  Similarity=0.021  Sum_probs=124.9

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (254)
                      .+++++||++.|++. +.  +++++||++++|++++|+||||||||||+++|+|+++   |+.|+ .+++   ....+. 
T Consensus       450 ~~i~~~nv~~~~~~~-~~--il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~---~~~G~i~~~~---~~~i~~-  519 (659)
T TIGR00954       450 NGIKFENIPLVTPNG-DV--LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWP---VYGGRLTKPA---KGKLFY-  519 (659)
T ss_pred             CeEEEEeeEEECCCC-Ce--eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCeEeecC---CCcEEE-
Confidence            469999999999642 22  5699999999999999999999999999999999987   88898 4432   233454 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCC--C---------CCCCCChhhhhhHhhhhh
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGS--V---------YAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~--~---------~~~~lS~G~~qrv~ia~a  222 (254)
                      +.++.+...   .++.+++.+.....+. ......+.+.++++.+++...  .         +...||||||||+++||+
T Consensus       520 v~Q~~~l~~---~tv~eni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARa  596 (659)
T TIGR00954       520 VPQRPYMTL---GTLRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARL  596 (659)
T ss_pred             ECCCCCCCC---cCHHHHHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHH
Confidence            666654332   3777776542211111 112234566777877776421  1         236899999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|+++||||||++||+...+.+.+++.+
T Consensus       597 l~~~p~illLDEpts~LD~~~~~~l~~~l~~  627 (659)
T TIGR00954       597 FYHKPQFAILDECTSAVSVDVEGYMYRLCRE  627 (659)
T ss_pred             HHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999988764

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=99.95  E-value=4.7e-27  Score=229.98  Aligned_cols=160  Identities=17%  Similarity=0.147  Sum_probs=123.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..++++||++.|++..+ ..+|+|+||++++|+.++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus       477 ~~I~~~nVsf~Y~~~~~-~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~idg~~i~~~~~~~  552 (711)
T TIGR00958       477 GLIEFQDVSFSYPNRPD-VPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQ---PTGGQVLLDGVPLVQYDHHY  552 (711)
T ss_pred             CeEEEEEEEEECCCCCC-CccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence            35999999999975321 225699999999999999999999999999999999998   99999 6777432       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~  213 (254)
                       ....+. +.++.+.+.   -++.+|+.+     +.+ ..+.+++.++++..++.         .+..    ...|||||
T Consensus       553 lr~~i~~-v~Q~~~lF~---gTIreNI~~-----g~~-~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQ  622 (711)
T TIGR00958       553 LHRQVAL-VGQEPVLFS---GSVRENIAY-----GLT-DTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQ  622 (711)
T ss_pred             HHhhceE-EecCccccc---cCHHHHHhc-----CCC-CCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHH
Confidence             234454 788876554   477777643     222 22345566666655432         2222    34799999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~  249 (254)
                      |||+++|||++.+|+|+||||||++||+...+.+.+
T Consensus       623 kQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~  658 (711)
T TIGR00958       623 KQRIAIARALVRKPRVLILDEATSALDAECEQLLQE  658 (711)
T ss_pred             HHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH
Confidence            999999999999999999999999999999888877

>PLN03073 ABC transporter F family; Provisional

Probab=99.95  E-value=8.8e-27  Score=226.95  Aligned_cols=161  Identities=15%  Similarity=0.131  Sum_probs=122.5

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee-cCCCCCCCCeEEE
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATV  154 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~~  154 (254)
                      ++++++||++.|++. ..  +++++||+|++|++++|+||||||||||+|+|+|+++   |++|++ +.+   ....|+ 
T Consensus       507 ~~L~~~~ls~~y~~~-~~--il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~---p~~G~I~~~~---~~~igy-  576 (718)
T PLN03073        507 PIISFSDASFGYPGG-PL--LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQ---PSSGTVFRSA---KVRMAV-  576 (718)
T ss_pred             ceEEEEeeEEEeCCC-Ce--eEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCceEEECC---ceeEEE-
Confidence            579999999999642 12  5699999999999999999999999999999999997   999994 433   223454 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI  231 (254)
                      +.++...    .++..++....... ..+ ......+.++++.+++.   ...++..|||||+||+++|++++.+|++||
T Consensus       577 v~Q~~~~----~l~~~~~~~~~~~~-~~~-~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLL  650 (718)
T PLN03073        577 FSQHHVD----GLDLSSNPLLYMMR-CFP-GVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILL  650 (718)
T ss_pred             Eeccccc----cCCcchhHHHHHHH-hcC-CCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEE
Confidence            5554211    12333332211111 111 12345677889988885   356788999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHhh
Q 025366          232 VDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       232 lDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |||||++||+.+++.+.+.+.
T Consensus       651 LDEPT~~LD~~s~~~l~~~L~  671 (718)
T PLN03073        651 LDEPSNHLDLDAVEALIQGLV  671 (718)
T ss_pred             EcCCCCCCCHHHHHHHHHHHH
Confidence            999999999999999988775

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=99.95  E-value=5.8e-27  Score=223.10  Aligned_cols=161  Identities=17%  Similarity=0.154  Sum_probs=120.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .++++|+++.|++..+.  +++|+||++++|+.++|+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus       316 ~i~~~~v~~~y~~~~~~--~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~i~~~~~~~~  390 (544)
T TIGR01842       316 HLSVENVTIVPPGGKKP--TLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWP---PTSGSVRLDGADLKQWDRETF  390 (544)
T ss_pred             eEEEEEEEEEcCCCCcc--ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEehhhCCHHHH
Confidence            59999999999753223  5699999999999999999999999999999999997   99999 6676322        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHH---------hhccCCC----CCCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLK---------NLRNQGS----VYAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~---------~l~l~~~----~~~~~lS~G~~  214 (254)
                      +...++ +.++.+.+.   -+..+|+...    .  ...+.+.+.+.++         .+..+.+    .....|||||+
T Consensus       391 ~~~i~~-v~q~~~lf~---~ti~~Ni~~~----~--~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~  460 (544)
T TIGR01842       391 GKHIGY-LPQDVELFP---GTVAENIARF----G--ENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQR  460 (544)
T ss_pred             hhheEE-ecCCccccc---ccHHHHHhcc----C--CCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHH
Confidence            123444 667655433   3666665421    1  1123334433333         3322222    23567999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ||+++|||++.+|++||+||||++||+...+.+.+.+.
T Consensus       461 qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~  498 (544)
T TIGR01842       461 QRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIK  498 (544)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988775

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=99.95  E-value=6.9e-27  Score=207.65  Aligned_cols=175  Identities=15%  Similarity=0.194  Sum_probs=139.3

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC------Cce-ecCCCCC
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ------KAS-SFDSQVK  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~------~G~-~~~~~~~  147 (254)
                      +++++++||+..|+.....+.++++|||++++||.++|+|.||||||-.++.|++++    |.      +|+ .|+|...
T Consensus         4 ~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LL----p~~~~~~~sg~i~f~G~dl   79 (534)
T COG4172           4 MPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLL----PSPAAAHPSGSILFDGEDL   79 (534)
T ss_pred             CcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhc----CCCcccCccceeEEcChhh
Confidence            678999999999986556677889999999999999999999999999999999999    55      345 5666421


Q ss_pred             -----------CCCeEEEeeCCCCCCCCcCCChhhcHHH-HHHHcCCCCCccHHHHHHHHHhhccC-----CCCCCCCCC
Q 025366          148 -----------PPDVATVLPMDGFHLYLSQLDAMEDPKE-AHARRGAPWTFNPLLLLNCLKNLRNQ-----GSVYAPSFD  210 (254)
Q Consensus       148 -----------~~~~g~~i~~~~~~~~~~~l~~~e~~~~-~~~~~g~~~~~~~~~~~~~l~~l~l~-----~~~~~~~lS  210 (254)
                                 +.....+|++....-.++-.++...+.+ .....|+.......+..++++.+++.     .+.|+++||
T Consensus        80 l~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLS  159 (534)
T COG4172          80 LAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELS  159 (534)
T ss_pred             hcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccC
Confidence                       2333445666654433333344333333 23345666666778889999999986     467999999


Q ss_pred             hhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       211 ~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||+|||.||.|++.+|++||.||||+.||...+.+|.+++.+
T Consensus       160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~  202 (534)
T COG4172         160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKE  202 (534)
T ss_pred             cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999864

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=99.94  E-value=4.1e-27  Score=224.24  Aligned_cols=156  Identities=16%  Similarity=0.138  Sum_probs=118.9

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .++++||++.|++. +.  +++|+||++++|+.++|+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus       322 ~i~~~~v~f~y~~~-~~--~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~~  395 (547)
T PRK10522        322 TLELRNVTFAYQDN-GF--SVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVTAEQPEDY  395 (547)
T ss_pred             eEEEEEEEEEeCCC-Ce--EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEECCCCCHHHH
Confidence            59999999999752 22  5699999999999999999999999999999999998   99999 6666432        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCC-------CCCCChhhhhhHhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY-------APSFDHGVGDPVEDD  220 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~-------~~~lS~G~~qrv~ia  220 (254)
                      +...+. +.++.+.+.   .+..++        +  ...+.+.+.+.++.+++.....       ...|||||+||+++|
T Consensus       396 ~~~i~~-v~q~~~lf~---~ti~~n--------~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lA  461 (547)
T PRK10522        396 RKLFSA-VFTDFHLFD---QLLGPE--------G--KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALL  461 (547)
T ss_pred             hhheEE-EecChhHHH---Hhhccc--------c--CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHH
Confidence            123343 566554322   122222        1  1233455667777776654321       347999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ||++.+|++||+||||++||+...+.+.+.+.
T Consensus       462 Ral~~~~~ililDE~ts~LD~~~~~~i~~~l~  493 (547)
T PRK10522        462 LALAEERDILLLDEWAADQDPHFRREFYQVLL  493 (547)
T ss_pred             HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999998877653

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=99.94  E-value=9.7e-27  Score=223.27  Aligned_cols=162  Identities=16%  Similarity=0.105  Sum_probs=121.6

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..++++||++.|++. +.  +++|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus       333 ~~i~~~~v~~~y~~~-~~--~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~---~~~G~i~~~g~~~~~~~~~~  406 (585)
T TIGR01192       333 GAVEFRHITFEFANS-SQ--GVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD---PTVGQILIDGIDINTVTRES  406 (585)
T ss_pred             CeEEEEEEEEECCCC-Cc--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCC---CCCCEEEECCEEhhhCCHHH
Confidence            359999999999752 22  5699999999999999999999999999999999998   99999 6666321       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CC----CCCCCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QG----SVYAPSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~----~~~~~~lS~G~  213 (254)
                       +...+. +.++.+.+.   .+..+|+.+.     .+. ...+++.+.++..++         +.    ......|||||
T Consensus       407 ~~~~i~~-v~q~~~lf~---~ti~~Ni~~~-----~~~-~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq  476 (585)
T TIGR01192       407 LRKSIAT-VFQDAGLFN---RSIRENIRLG-----REG-ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGE  476 (585)
T ss_pred             HHhheEE-EccCCccCc---ccHHHHHhcC-----CCC-CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHH
Confidence             123444 677765443   4677766432     121 223333333332221         11    23356799999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||+++|||++.+|++||+||||++||+.+.+.+.+.+++
T Consensus       477 ~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~  516 (585)
T TIGR01192       477 RQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDA  516 (585)
T ss_pred             HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988753

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=99.94  E-value=7.9e-27  Score=224.04  Aligned_cols=160  Identities=18%  Similarity=0.162  Sum_probs=123.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .++++||++.|++. +.  +++|+||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|...        
T Consensus       334 ~I~~~~vsf~y~~~-~~--iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~---p~~G~I~i~g~~i~~~~~~~~  407 (588)
T PRK13657        334 AVEFDDVSFSYDNS-RQ--GVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD---PQSGRILIDGTDIRTVTRASL  407 (588)
T ss_pred             eEEEEEEEEEeCCC-Cc--eecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEhhhCCHHHH
Confidence            58999999999752 22  5699999999999999999999999999999999998   99999 6776321        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCC----CCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~  214 (254)
                      +...++ ++++.+.+.   -|..+|+.+.     .+ ..+.+++..+++.+++         +.+.    ....|||||+
T Consensus       408 r~~i~~-v~Q~~~lf~---~Ti~~Ni~~~-----~~-~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~  477 (588)
T PRK13657        408 RRNIAV-VFQDAGLFN---RSIEDNIRVG-----RP-DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGER  477 (588)
T ss_pred             HhheEE-EecCccccc---ccHHHHHhcC-----CC-CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHH
Confidence            233454 778776543   3677766432     12 2234445555554433         2222    2346999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ||+++|||++.+|+|+||||||++||+...+.+.+.+.
T Consensus       478 QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~  515 (588)
T PRK13657        478 QRLAIARALLKDPPILILDEATSALDVETEAKVKAALD  515 (588)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988775

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=99.94  E-value=2.9e-26  Score=201.21  Aligned_cols=151  Identities=10%  Similarity=0.069  Sum_probs=109.4

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (254)
                      .+.|+++|+++.  ..  .  +++++||++++|++++|+|+||||||||+++|+|+++   |++|+ .++|     ..++
T Consensus        37 ~~~l~i~nls~~--~~--~--vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~---p~~G~I~i~g-----~i~y  102 (282)
T cd03291          37 DNNLFFSNLCLV--GA--P--VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELE---PSEGKIKHSG-----RISF  102 (282)
T ss_pred             CCeEEEEEEEEe--cc--c--ceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC-----EEEE
Confidence            457999999985  22  2  6799999999999999999999999999999999997   99999 5554     2444


Q ss_pred             EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------C----CCCCCCCCChhhhhhHhhh
Q 025366          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~lS~G~~qrv~ia  220 (254)
                       +.++.+. +.  .++.+++.+..     ..  ........++.+++         .    ....+..||+||+||+++|
T Consensus       103 -v~q~~~l-~~--~tv~enl~~~~-----~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lA  171 (282)
T cd03291         103 -SSQFSWI-MP--GTIKENIIFGV-----SY--DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLA  171 (282)
T ss_pred             -EeCcccc-cc--cCHHHHhhccc-----cc--CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHH
Confidence             5555432 22  25656554311     00  01111222222211         1    1123568999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSM  250 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~l  250 (254)
                      ++++.+|++||+||||++||+..++.+.+.
T Consensus       172 raL~~~p~iLiLDEPt~gLD~~~~~~l~~~  201 (282)
T cd03291         172 RAVYKDADLYLLDSPFGYLDVFTEKEIFES  201 (282)
T ss_pred             HHHhcCCCEEEEECCCccCCHHHHHHHHHH
Confidence            999999999999999999999999988764

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=99.94  E-value=1.5e-26  Score=221.32  Aligned_cols=162  Identities=14%  Similarity=0.181  Sum_probs=122.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .++++++++.|+...+.  +++++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus       313 ~I~~~~v~~~y~~~~~~--~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~---p~~G~i~~~g~~~~~~~~~~~  387 (569)
T PRK10789        313 ELDVNIRQFTYPQTDHP--ALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD---VSEGDIRFHDIPLTKLQLDSW  387 (569)
T ss_pred             cEEEEEEEEECCCCCCc--cccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccC---CCCCEEEECCEEHhhCCHHHH
Confidence            48999999999753222  5699999999999999999999999999999999998   99999 6666422        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CC----CCCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GS----VYAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~----~~~~~lS~G~~  214 (254)
                      +...+. +.++.+.+.   -++.+|+.+     +.+ ....+.+..+++..++.         .+    .....|||||+
T Consensus       388 ~~~i~~-v~q~~~lf~---~ti~~Ni~~-----~~~-~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~  457 (569)
T PRK10789        388 RSRLAV-VSQTPFLFS---DTVANNIAL-----GRP-DATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQK  457 (569)
T ss_pred             HhheEE-EccCCeecc---ccHHHHHhc-----CCC-CCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHH
Confidence            123444 666654433   366676643     212 23344555555544332         12    23457999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|||++.+|+++|+||||++||+...+.+.+.+..
T Consensus       458 qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~  496 (569)
T PRK10789        458 QRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQ  496 (569)
T ss_pred             HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888753

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=99.94  E-value=1.2e-26  Score=226.68  Aligned_cols=163  Identities=15%  Similarity=0.113  Sum_probs=124.6

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..++++||++.|++..+.  +++|+||++++|+.++|+|+||||||||+++|+|++.   |++|+ .++|...       
T Consensus       454 ~~i~~~~vsf~y~~~~~~--il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~---p~~G~I~idg~~i~~~~~~~  528 (694)
T TIGR01846       454 GAITFENIRFRYAPDSPE--VLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT---PQHGQVLVDGVDLAIADPAW  528 (694)
T ss_pred             CeEEEEEEEEEcCCCCcc--ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECCEehhhCCHHH
Confidence            359999999999753223  5699999999999999999999999999999999998   99999 6777432       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCC----CCCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~  213 (254)
                       +...++ +.++.+.+.   -++.+|+..     +.+ ..+.+.+.++++..++         +.+.    ....|||||
T Consensus       529 ~r~~i~~-v~q~~~lf~---~ti~eNi~~-----~~~-~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq  598 (694)
T TIGR01846       529 LRRQMGV-VLQENVLFS---RSIRDNIAL-----CNP-GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ  598 (694)
T ss_pred             HHHhCeE-EccCCeehh---hhHHHHHhc-----CCC-CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence             223454 777765443   366676643     212 2334455555554432         2222    345799999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|||++.+|++||+||||++||+.+.+++.+.+.+
T Consensus       599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~  638 (694)
T TIGR01846       599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMRE  638 (694)
T ss_pred             HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=1e-26  Score=213.14  Aligned_cols=159  Identities=16%  Similarity=0.156  Sum_probs=127.6

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .|+++||++.|++.. ++  |+++||+|++||-|||+|+|||||||++|+|.++.    -++|+ .++|...        
T Consensus       351 ~I~F~dV~f~y~~k~-~i--L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~----d~sG~I~IdG~dik~~~~~Sl  423 (591)
T KOG0057|consen  351 SIEFDDVHFSYGPKR-KV--LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFF----DYSGSILIDGQDIKEVSLESL  423 (591)
T ss_pred             cEEEEeeEEEeCCCC-ce--ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHh----ccCCcEEECCeeHhhhChHHh
Confidence            399999999999742 34  59999999999999999999999999999999999    79999 7888432        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC---------C----CCCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------S----VYAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---------~----~~~~~lS~G~~  214 (254)
                      +..+|. ++||...+.   -|+..|+.     +|.+.. ..+++.+..++.+++.         .    -.-..||||||
T Consensus       424 R~~Ig~-VPQd~~LFn---dTIl~NI~-----YGn~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGek  493 (591)
T KOG0057|consen  424 RQSIGV-VPQDSVLFN---DTILYNIK-----YGNPSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEK  493 (591)
T ss_pred             hhheeE-eCCcccccc---hhHHHHhh-----cCCCCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchH
Confidence            344565 899886554   26666653     454432 3566777777776641         1    12347999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ||++++||++.+|+|+++||||+.||.+.-+++.+++.
T Consensus       494 QrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~  531 (591)
T KOG0057|consen  494 QRVSLARAFLKDAPILLLDEATSALDSETEREILDMIM  531 (591)
T ss_pred             HHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHH
Confidence            99999999999999999999999999999999988874

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=99.94  E-value=2.1e-26  Score=220.56  Aligned_cols=163  Identities=20%  Similarity=0.192  Sum_probs=123.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..++++||++.|+.... ..+++|+||++++||.++|+|+||||||||+++|+|+++   |++|+ .++|...       
T Consensus       336 ~~i~~~~v~f~y~~~~~-~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~---p~~G~I~i~g~~i~~~~~~~  411 (576)
T TIGR02204       336 GEIEFEQVNFAYPARPD-QPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYD---PQSGRILLDGVDLRQLDPAE  411 (576)
T ss_pred             ceEEEEEEEEECCCCCC-CccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccC---CCCCEEEECCEEHHhcCHHH
Confidence            45899999999975211 125699999999999999999999999999999999998   99999 6676321       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~  213 (254)
                       ....++ ++++.+.+.   -+..+|+.+     +.+. .+.+++.++++..++.         .+.    ....|||||
T Consensus       412 ~~~~i~~-~~Q~~~lf~---~Ti~~Ni~~-----~~~~-~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq  481 (576)
T TIGR02204       412 LRARMAL-VPQDPVLFA---ASVMENIRY-----GRPD-ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ  481 (576)
T ss_pred             HHHhceE-EccCCcccc---ccHHHHHhc-----CCCC-CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHH
Confidence             123454 777766544   367776643     2222 2345565666655432         222    234699999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +||+++|||+..+|+++|+||||++||+...+.+.+.+.
T Consensus       482 ~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~  520 (576)
T TIGR02204       482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALE  520 (576)
T ss_pred             HHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHH
Confidence            999999999999999999999999999999998887764

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.94  E-value=4e-26  Score=214.39  Aligned_cols=165  Identities=15%  Similarity=0.060  Sum_probs=120.9

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (254)
                      |.+|.++++++.|+++.    +++++||++.+|+.|||+|+||||||||||+|+|.+.   |+.|+ ...+.   ...++
T Consensus         1 m~~i~~~~ls~~~g~~~----l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~---~~~G~i~~~~~---~~v~~   70 (530)
T COG0488           1 MSMITLENLSLAYGDRP----LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELE---PDSGEVTRPKG---LRVGY   70 (530)
T ss_pred             CceEEEeeeEEeeCCce----eecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCc---CCCCeEeecCC---ceEEE
Confidence            56899999999998844    5699999999999999999999999999999999997   99998 33321   23444


Q ss_pred             EeeCCCCCCCCcCCChhhcHHHHH-----------HH------------------cC-CCCCccHHHHHHHHHhhccCC-
Q 025366          154 VLPMDGFHLYLSQLDAMEDPKEAH-----------AR------------------RG-APWTFNPLLLLNCLKNLRNQG-  202 (254)
Q Consensus       154 ~i~~~~~~~~~~~l~~~e~~~~~~-----------~~------------------~g-~~~~~~~~~~~~~l~~l~l~~-  202 (254)
                       +.++......  .++.+.+....           ..                  +. +.......++..++..+++.. 
T Consensus        71 -l~Q~~~~~~~--~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg~~~~  147 (530)
T COG0488          71 -LSQEPPLDPE--KTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDE  147 (530)
T ss_pred             -eCCCCCcCCC--ccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCCCCcc
Confidence             5555432211  23322111100           00                  00 000011234566666676665 


Q ss_pred             CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       203 ~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +.++..||||||.|+++|++|..+||+|||||||+.||..+..-+.++|.
T Consensus       148 ~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~  197 (530)
T COG0488         148 DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLK  197 (530)
T ss_pred             cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHH
Confidence            68889999999999999999999999999999999999999888888774

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=99.94  E-value=5.6e-27  Score=190.48  Aligned_cols=167  Identities=16%  Similarity=0.219  Sum_probs=130.2

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      +++++++|++.|+++.    |++++||++.+||.-+|+|||||||||++.+|+|..+   |+.|+ .+++...       
T Consensus         4 ~iL~~~~vsVsF~GF~----Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtr---p~~G~v~f~g~~dl~~~~e~   76 (249)
T COG4674           4 IILYLDGVSVSFGGFK----ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTR---PQEGEVLFDGDTDLTKLPEH   76 (249)
T ss_pred             ceEEEeceEEEEccee----eeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCC---CCcceEEEcCchhhccCCHH
Confidence            5799999999999976    8999999999999999999999999999999999997   99999 6777321       


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC-C-------CCCccHHHHHHHHHhhccCC--CCCCCCCChhhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG-A-------PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVG  214 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g-~-------~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~  214 (254)
                         +.-+|.-++-.  .++ ..+++++|++....... +       .......++.++|+.+++..  +.....||+|||
T Consensus        77 ~IAr~GIGRKFQ~P--tVf-e~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqK  153 (249)
T COG4674          77 RIARAGIGRKFQKP--TVF-ENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQK  153 (249)
T ss_pred             HHHHhccCccccCC--eeh-hhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchh
Confidence               11123211111  112 23789999877653211 1       12233457788999888874  556678999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |++.|+..++.+|++|++|||++|+-....++..++|.
T Consensus       154 QwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~  191 (249)
T COG4674         154 QWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLK  191 (249)
T ss_pred             hhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999888888777764

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=99.94  E-value=2.4e-26  Score=199.08  Aligned_cols=157  Identities=16%  Similarity=0.113  Sum_probs=111.3

Q ss_pred             ecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee------------cCCCCCC
Q 025366           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVKP  148 (254)
Q Consensus        81 ~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~------------~~~~~~~  148 (254)
                      .+|+++|++..   .+++++++ +++|++++|+||||||||||+++|+|+++   |++|++            ++|....
T Consensus         4 ~~~~~~y~~~~---~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~---p~~G~I~~~~~~~~~~~~~~g~~~~   76 (255)
T cd03236           4 DEPVHRYGPNS---FKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLK---PNLGKFDDPPDWDEILDEFRGSELQ   76 (255)
T ss_pred             cCcceeecCcc---hhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcC---CCCceEeeccccchhhhhccCchhh
Confidence            47899997531   26799995 99999999999999999999999999997   999984            3342210


Q ss_pred             C----------CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhh
Q 025366          149 P----------DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDP  216 (254)
Q Consensus       149 ~----------~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qr  216 (254)
                      .          ..+. +.+. .... + .+..+++...     +..........++++.+++..  +..+..||+||+||
T Consensus        77 ~~~~~~~~~~~~i~~-~~~~-~~~~-~-~~~~~~i~~~-----l~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qr  147 (255)
T cd03236          77 NYFTKLLEGDVKVIV-KPQY-VDLI-P-KAVKGKVGEL-----LKKKDERGKLDELVDQLELRHVLDRNIDQLSGGELQR  147 (255)
T ss_pred             hhhHHhhhcccceee-ecch-hccC-c-hHHHHHHHHH-----hchhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHH
Confidence            0          0111 1111 0100 0 1122222211     111122355678888887753  56777999999999


Q ss_pred             HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++|++++.+|+++|+||||++||+..++.+.+++.+
T Consensus       148 v~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~  184 (255)
T cd03236         148 VAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE  184 (255)
T ss_pred             HHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888753

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=3.8e-26  Score=211.52  Aligned_cols=159  Identities=13%  Similarity=0.122  Sum_probs=124.0

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------C
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------P  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~  148 (254)
                      ++.+++++.|++.. +  ++.|+||++++|+.++|+|+||||||||+++|+|+.+   |+.|+ .++|...        .
T Consensus       321 i~~~~l~~~y~~g~-~--~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~---~~~G~I~vng~~l~~l~~~~~~  394 (559)
T COG4988         321 ISLENLSFRYPDGK-P--ALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLA---PTQGEIRVNGIDLRDLSPEAWR  394 (559)
T ss_pred             eeecceEEecCCCC-c--ccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCccccccCHHHHH
Confidence            45569999998853 2  6799999999999999999999999999999999997   89999 5666322        1


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--------CCCCCC----CCChhhhhh
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------GSVYAP----SFDHGVGDP  216 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--------~~~~~~----~lS~G~~qr  216 (254)
                      .+.. +|.++++.+..   +..||+.+..     + +...+.+.++++..++.        .+..+.    .+||||+||
T Consensus       395 k~i~-~v~Q~p~lf~g---TireNi~l~~-----~-~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QR  464 (559)
T COG4988         395 KQIS-WVSQNPYLFAG---TIRENILLAR-----P-DASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQR  464 (559)
T ss_pred             hHee-eeCCCCccccc---cHHHHhhccC-----C-cCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHH
Confidence            2334 47888776553   6677664422     2 23456666777766553        233333    499999999


Q ss_pred             HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +++|||+..+++++|+||||+.||.++.+.|.+.+.
T Consensus       465 laLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~  500 (559)
T COG4988         465 LALARALLSPASLLLLDEPTAHLDAETEQIILQALQ  500 (559)
T ss_pred             HHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHH
Confidence            999999999999999999999999999998888764

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=99.94  E-value=2.2e-26  Score=219.53  Aligned_cols=159  Identities=14%  Similarity=-0.002  Sum_probs=118.1

Q ss_pred             ceEEEecceeecccccc-eeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366           76 PVVEARCMDEVYDALAQ-RLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~-~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (254)
                      ..++++||++.|++... ...+|+|+||++++|++++|+||||||||||+++|+|++.   |++|+ .++|....     
T Consensus       336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~---p~~G~i~~~g~~i~~~~~~  412 (555)
T TIGR01194       336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI---PQEGEILLDGAAVSADSRD  412 (555)
T ss_pred             ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence            35899999999976310 1125699999999999999999999999999999999997   99999 66664321     


Q ss_pred             ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCC--------CCCCCChhhhhhH
Q 025366          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV--------YAPSFDHGVGDPV  217 (254)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~--------~~~~lS~G~~qrv  217 (254)
                         ...+. +.++.+.+.   -+..+|.         ......+.+.++++.+++....        ....||||||||+
T Consensus       413 ~~~~~i~~-v~q~~~lf~---~ti~~n~---------~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRl  479 (555)
T TIGR01194       413 DYRDLFSA-IFADFHLFD---DLIGPDE---------GEHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRL  479 (555)
T ss_pred             HHHhhCcE-EccChhhhh---hhhhccc---------ccchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHH
Confidence               22333 555543222   1222221         1123445667777777665321        1357999999999


Q ss_pred             hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 025366          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM  250 (254)
Q Consensus       218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~l  250 (254)
                      ++|||++.+|+++|+||||++||+...+.+.+.
T Consensus       480 alaRall~~~~ililDE~ts~LD~~~~~~i~~~  512 (555)
T TIGR01194       480 ALICAWLEDRPILLFDEWAADQDPAFKRFFYEE  512 (555)
T ss_pred             HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHH
Confidence            999999999999999999999999999998763

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.94  E-value=3.3e-26  Score=236.48  Aligned_cols=175  Identities=12%  Similarity=0.088  Sum_probs=131.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----CCC
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----PPD  150 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~~~  150 (254)
                      .+++++||++.|+.......+|+|||+++++|++++|+||||||||||+++|+|+++...|++|+ .++|...    +..
T Consensus       758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~~~~~~  837 (1394)
T TIGR00956       758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDSSFQRS  837 (1394)
T ss_pred             ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECChhhhcc
Confidence            36899999999963212223679999999999999999999999999999999998422257799 6777432    233


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcC---CCCCccHHHHHHHHHhhccC--CCCCCC----CCChhhhhhHhhhh
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRG---APWTFNPLLLLNCLKNLRNQ--GSVYAP----SFDHGVGDPVEDDI  221 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g---~~~~~~~~~~~~~l~~l~l~--~~~~~~----~lS~G~~qrv~ia~  221 (254)
                      .++ +.+++..+.  .+++.|++.+......   .........+.++++.+++.  .+..+.    .||+|||||++||+
T Consensus       838 i~y-v~Q~~~~~~--~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~  914 (1394)
T TIGR00956       838 IGY-VQQQDLHLP--TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV  914 (1394)
T ss_pred             eee-ecccccCCC--CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence            455 666654333  3799999887554331   11112234567888888775  344444    79999999999999


Q ss_pred             hhcCCCc-EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHK-VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~-vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|+.+|+ ||+|||||++||......+.+++.+
T Consensus       915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~  947 (1394)
T TIGR00956       915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRK  947 (1394)
T ss_pred             HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            9999997 9999999999999999999998864

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=99.94  E-value=5.1e-27  Score=224.46  Aligned_cols=161  Identities=16%  Similarity=0.142  Sum_probs=124.1

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      .-++++||++.|++. +.  +++|+||++++|+.+||+||||||||||+++|++++.   |++|+ .+||...       
T Consensus       327 ~~I~f~~vsf~y~~~-~~--vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~---~~~G~I~idg~dI~~i~~~~  400 (567)
T COG1132         327 GSIEFENVSFSYPGK-KP--VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYD---PTSGEILIDGIDIRDISLDS  400 (567)
T ss_pred             CeEEEEEEEEEcCCC-Cc--cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCC---CCCCeEEECCEehhhcCHHH
Confidence            349999999999841 22  6699999999999999999999999999999999998   99999 5677322       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhc---------cCCCCCC----CCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR---------NQGSVYA----PSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~---------l~~~~~~----~~lS~G~  213 (254)
                       +...+ +++|+.+.+.   -|+.+|+.+     |.++ ...+++.++++...         .+.+..+    ..|||||
T Consensus       401 lr~~I~-~V~Qd~~LF~---~TI~~NI~~-----g~~~-at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQ  470 (567)
T COG1132         401 LRKRIG-IVSQDPLLFS---GTIRENIAL-----GRPD-ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQ  470 (567)
T ss_pred             HHHhcc-EEcccceeec---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHH
Confidence             34456 4787776554   377777654     3222 23344444444332         1233333    4799999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |||+++|||++.+|++|||||||+.+|..+...+.+.++
T Consensus       471 rQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~  509 (567)
T COG1132         471 RQRLAIARALLRNPPILILDEATSALDTETEALIQDALK  509 (567)
T ss_pred             HHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHH
Confidence            999999999999999999999999999999999988875

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.2e-26  Score=212.35  Aligned_cols=163  Identities=15%  Similarity=0.098  Sum_probs=123.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CC---
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PP---  149 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~---  149 (254)
                      .++++||+++|++..  ..+|+|+||++++||.++|+|++|||||||+.+|+|...   |++|+ .+.|...   ++   
T Consensus       336 ~l~~~~vsF~y~~~~--~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~---~~~G~i~~~g~~~~~l~~~~~  410 (573)
T COG4987         336 ALELRNVSFTYPGQQ--TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD---PQQGSITLNGVEIASLDEQAL  410 (573)
T ss_pred             eeeeccceeecCCCc--cchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccC---CCCCeeeECCcChhhCChhhH
Confidence            799999999999844  336699999999999999999999999999999999997   99999 4554221   11   


Q ss_pred             -CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC---------C----CCCCCCChhhhh
Q 025366          150 -DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG---------S----VYAPSFDHGVGD  215 (254)
Q Consensus       150 -~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---------~----~~~~~lS~G~~q  215 (254)
                       +...++.+....+.   -|..+|+..     +.+. ...+.+.++++.+++..         +    -.-..|||||+|
T Consensus       411 ~e~i~vl~Qr~hlF~---~Tlr~NL~l-----A~~~-AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~r  481 (573)
T COG4987         411 RETISVLTQRVHLFS---GTLRDNLRL-----ANPD-ASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERR  481 (573)
T ss_pred             HHHHhhhccchHHHH---HHHHHHHhh-----cCCC-CCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHH
Confidence             01112333332221   244444422     2233 45677788888887641         1    223479999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++||++.++.+++||||||.|||+...+++.+++.+
T Consensus       482 RLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~  519 (573)
T COG4987         482 RLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFE  519 (573)
T ss_pred             HHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHH
Confidence            99999999999999999999999999999999999865

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=99.94  E-value=9.8e-27  Score=198.19  Aligned_cols=154  Identities=12%  Similarity=0.128  Sum_probs=125.6

Q ss_pred             cceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC------------CC
Q 025366           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV------------KP  148 (254)
Q Consensus        82 ~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~------------~~  148 (254)
                      |+.+.+|++.      -+++|..+..-+++|.|+||||||||+|+|+|+++   |+.|. .++|.+            .+
T Consensus         5 ~~~~~lG~~~------l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~r---PdeG~I~lngr~L~Ds~k~i~lp~~~   75 (352)
T COG4148           5 NFRQRLGNFA------LDANFTLPARGITALFGPSGSGKTSLINMIAGLTR---PDEGRIELNGRVLVDAEKGIFLPPEK   75 (352)
T ss_pred             ehhhhcCceE------EEEeccCCCCceEEEecCCCCChhhHHHHHhccCC---ccccEEEECCEEeecccCCcccChhh
Confidence            5666777643      57899998778999999999999999999999998   99999 555532            13


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                      ...|+ +++|...++.  +++..|+.+.....      ....+..+.+.|+++  .++++..||||+||||+|+|||...
T Consensus        76 RriGY-VFQDARLFpH--~tVrgNL~YG~~~~------~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~  146 (352)
T COG4148          76 RRIGY-VFQDARLFPH--YTVRGNLRYGMWKS------MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTA  146 (352)
T ss_pred             heeee-Eeeccccccc--eEEecchhhhhccc------chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcC
Confidence            45676 7777765544  78888886644321      445677888888887  6889999999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++|++|||.+.||.+-+++++-+++.
T Consensus       147 P~LLLmDEPLaSLD~~RK~EilpylER  173 (352)
T COG4148         147 PELLLMDEPLASLDLPRKREILPYLER  173 (352)
T ss_pred             CCeeeecCchhhcccchhhHHHHHHHH
Confidence            999999999999999999999988753

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.93  E-value=6.6e-26  Score=234.77  Aligned_cols=163  Identities=13%  Similarity=0.076  Sum_probs=124.5

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC--------------------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP--------------------  136 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p--------------------  136 (254)
                      -|+++||++.|++... ..+|+|+||++++|+.+||+||||||||||+++|.|++.   |                    
T Consensus      1165 ~I~f~nVsF~Y~~~~~-~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~yd---p~~~~~~~~~~~~~~~~~~~~ 1240 (1466)
T PTZ00265       1165 KIEIMDVNFRYISRPN-VPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYD---LKNDHHIVFKNEHTNDMTNEQ 1240 (1466)
T ss_pred             eEEEEEEEEECCCCCC-CccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCC---Ccccccccccccccccccccc
Confidence            5999999999975321 226799999999999999999999999999999999997   6                    


Q ss_pred             ----------------------------------CCce-ecCCCCC--------CCCeEEEeeCCCCCCCCcCCChhhcH
Q 025366          137 ----------------------------------QKAS-SFDSQVK--------PPDVATVLPMDGFHLYLSQLDAMEDP  173 (254)
Q Consensus       137 ----------------------------------~~G~-~~~~~~~--------~~~~g~~i~~~~~~~~~~~l~~~e~~  173 (254)
                                                        ++|+ .++|...        +...+. |.|+.+.+.   .|+.||+
T Consensus      1241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~-V~Qep~LF~---gTIreNI 1316 (1466)
T PTZ00265       1241 DYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSI-VSQEPMLFN---MSIYENI 1316 (1466)
T ss_pred             ccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccE-eCCCCcccc---ccHHHHH
Confidence                                              5788 5666321        233454 777766543   4778877


Q ss_pred             HHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCCCC----CCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCC
Q 025366          174 KEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (254)
Q Consensus       174 ~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~~----~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD  240 (254)
                      .+.     .+ ....+.+.++++..++         +.+..+    ..||||||||++|||||+.+|+||||||||+.||
T Consensus      1317 ~~g-----~~-~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD 1390 (1466)
T PTZ00265       1317 KFG-----KE-DATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLD 1390 (1466)
T ss_pred             hcC-----CC-CCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccC
Confidence            553     22 2234555555554433         233333    4699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhc
Q 025366          241 GGVWKDVSSMFDE  253 (254)
Q Consensus       241 ~~~~~~l~~ll~~  253 (254)
                      ..+.+.|.+.|+.
T Consensus      1391 ~~sE~~I~~~L~~ 1403 (1466)
T PTZ00265       1391 SNSEKLIEKTIVD 1403 (1466)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999888753

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=99.93  E-value=5.8e-26  Score=235.17  Aligned_cols=169  Identities=15%  Similarity=0.105  Sum_probs=126.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ec-CCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF-DSQVK-------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~-~~~~~-------  147 (254)
                      .|+++||++.|+... ...+|+|+||++++|++++|+||||||||||+++|+|++.   |++|+ .+ ++...       
T Consensus       382 ~I~~~nVsf~Y~~~~-~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~---p~~G~I~i~~g~~i~~~~~~~  457 (1466)
T PTZ00265        382 KIQFKNVRFHYDTRK-DVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYD---PTEGDIIINDSHNLKDINLKW  457 (1466)
T ss_pred             cEEEEEEEEEcCCCC-CCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhcc---CCCCeEEEeCCcchhhCCHHH
Confidence            599999999998632 1236799999999999999999999999999999999998   99999 56 44321       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc-C-------C------------------------------------
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR-G-------A------------------------------------  182 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g-------~------------------------------------  182 (254)
                       +...|. +.++...+.   .++.+|+.+..... +       .                                    
T Consensus       458 lr~~Ig~-V~Q~~~LF~---~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  533 (1466)
T PTZ00265        458 WRSKIGV-VSQDPLLFS---NSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNE  533 (1466)
T ss_pred             HHHhccE-ecccccchh---ccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhh
Confidence             123454 677654432   47888886632100 0       0                                    


Q ss_pred             -------CCCccHHHHHHHHHhhccC---------C----CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH
Q 025366          183 -------PWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (254)
Q Consensus       183 -------~~~~~~~~~~~~l~~l~l~---------~----~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~  242 (254)
                             ......+.+.++++.+++.         .    ......||||||||++||||++.+|+||||||||++||+.
T Consensus       534 ~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~  613 (1466)
T PTZ00265        534 LIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNK  613 (1466)
T ss_pred             hhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHH
Confidence                   0012234556666555432         1    2345689999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhc
Q 025366          243 VWKDVSSMFDE  253 (254)
Q Consensus       243 ~~~~l~~ll~~  253 (254)
                      ..+.+.+.|++
T Consensus       614 se~~i~~~L~~  624 (1466)
T PTZ00265        614 SEYLVQKTINN  624 (1466)
T ss_pred             HHHHHHHHHHH
Confidence            99999988864

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=99.93  E-value=4.6e-26  Score=183.30  Aligned_cols=123  Identities=21%  Similarity=0.290  Sum_probs=95.2

Q ss_pred             EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCC
Q 025366           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG  159 (254)
Q Consensus        80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~  159 (254)
                      ++++++.|.+.  .  +++++||++++|++++|+|+||||||||+++|+|+++   |+.             |. +.+++
T Consensus         2 ~~~~~~~~~~~--~--~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~---~~~-------------G~-i~~~~   60 (157)
T cd00267           2 IENLSFRYGGR--T--ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK---PTS-------------GE-ILIDG   60 (157)
T ss_pred             eEEEEEEeCCe--e--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCc-------------cE-EEECC
Confidence            57889999763  2  6699999999999999999999999999999999985   444             44 44444


Q ss_pred             CCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCC
Q 025366          160 FHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF  238 (254)
Q Consensus       160 ~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~  238 (254)
                      .....     ... .......++ ++                        ||+||+||++++++++.+|+++|+||||++
T Consensus        61 ~~~~~-----~~~-~~~~~~i~~~~q------------------------lS~G~~~r~~l~~~l~~~~~i~ilDEp~~~  110 (157)
T cd00267          61 KDIAK-----LPL-EELRRRIGYVPQ------------------------LSGGQRQRVALARALLLNPDLLLLDEPTSG  110 (157)
T ss_pred             EEccc-----CCH-HHHHhceEEEee------------------------CCHHHHHHHHHHHHHhcCCCEEEEeCCCcC
Confidence            32210     000 111112222 21                        999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHhhc
Q 025366          239 LDGGVWKDVSSMFDE  253 (254)
Q Consensus       239 lD~~~~~~l~~ll~~  253 (254)
                      ||..++..+.+++.+
T Consensus       111 lD~~~~~~l~~~l~~  125 (157)
T cd00267         111 LDPASRERLLELLRE  125 (157)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999988753

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK13409 putative ATPase RIL; Provisional

Probab=99.93  E-value=6e-26  Score=217.26  Aligned_cols=156  Identities=15%  Similarity=0.049  Sum_probs=112.6

Q ss_pred             cceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee------------cCCCCCC-
Q 025366           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVKP-  148 (254)
Q Consensus        82 ~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~------------~~~~~~~-  148 (254)
                      +++++|+..  . .+|++++ .+++|+++||+||||||||||+|+|+|+++   |+.|++            ++|.... 
T Consensus        78 ~~~~~yg~~--~-~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~---p~~G~i~~~~~~~~~~~~~~G~~l~~  150 (590)
T PRK13409         78 EPVHRYGVN--G-FKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELI---PNLGDYEEEPSWDEVLKRFRGTELQN  150 (590)
T ss_pred             CceEEecCC--c-eeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCccccCCCcHHHHHHHhCChHHHH
Confidence            389999862  1 2679999 899999999999999999999999999997   999984            4443210 


Q ss_pred             ---------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhH
Q 025366          149 ---------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPV  217 (254)
Q Consensus       149 ---------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv  217 (254)
                               ...+..+............++.+++..         ......+.++++.+++.  .+..+..|||||+||+
T Consensus       151 ~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~---------~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv  221 (590)
T PRK13409        151 YFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKK---------VDERGKLDEVVERLGLENILDRDISELSGGELQRV  221 (590)
T ss_pred             HHHHHhccCcceeecccchhhhhhhhcchHHHHHHh---------hhHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHH
Confidence                     011110100000000000133333221         01234567788888875  4778899999999999


Q ss_pred             hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||++++.+|++|||||||++||+..+..+.++|.+
T Consensus       222 ~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~  257 (590)
T PRK13409        222 AIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRE  257 (590)
T ss_pred             HHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998864

>PLN03073 ABC transporter F family; Provisional

Probab=99.93  E-value=1.2e-25  Score=219.09  Aligned_cols=161  Identities=13%  Similarity=0.040  Sum_probs=112.2

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeE
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVA  152 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g  152 (254)
                      .+.+|+++|+++.|++..    +|+|+||+|.+|+++||+|+||||||||||+|+|......|..|+ .+..+...    
T Consensus       174 ~~~~I~i~nls~~y~~~~----ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~----  245 (718)
T PLN03073        174 AIKDIHMENFSISVGGRD----LIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVV----  245 (718)
T ss_pred             CceeEEEceEEEEeCCCE----EEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCC----
Confidence            456899999999998643    569999999999999999999999999999999964111266665 22111000    


Q ss_pred             EEeeCCCCCCCCcCCChhh--------------------------------------------------cHHHHHHHcCC
Q 025366          153 TVLPMDGFHLYLSQLDAME--------------------------------------------------DPKEAHARRGA  182 (254)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~e--------------------------------------------------~~~~~~~~~g~  182 (254)
                            +     ...++.+                                                  ........++.
T Consensus       246 ------g-----~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  314 (718)
T PLN03073        246 ------G-----DDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLEL  314 (718)
T ss_pred             ------C-----CCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHh
Confidence                  0     0011100                                                  00011111111


Q ss_pred             CCC-ccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          183 PWT-FNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       183 ~~~-~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ... ....++..++..+++.   .+.++..|||||+||++||++|+.+|++|||||||++||+..+..+.++|.+
T Consensus       315 ~~~~~~~~r~~~~L~~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~  389 (718)
T PLN03073        315 IDAYTAEARAASILAGLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLK  389 (718)
T ss_pred             cCcchHHHHHHHHHHHCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            111 1123445566666664   3567889999999999999999999999999999999999999999998864

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.93  E-value=1.3e-25  Score=183.97  Aligned_cols=120  Identities=15%  Similarity=0.066  Sum_probs=90.4

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      +++++||++++|++++|+||||||||||+|+|.+       ++|+              +.+.+..      +...    
T Consensus        10 ~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il~-------~~G~--------------v~~~~~~------~~~~----   58 (176)
T cd03238          10 NLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGLY-------ASGK--------------ARLISFL------PKFS----   58 (176)
T ss_pred             eecceEEEEcCCCEEEEECCCCCCHHHHHHHHhh-------cCCc--------------EEECCcc------cccc----
Confidence            6799999999999999999999999999998842       3443              1122210      0000    


Q ss_pred             HHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCC--CcEEEEeCCCCCCCHHHHHHHHHH
Q 025366          176 AHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSM  250 (254)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~--p~vlIlDEp~~~lD~~~~~~l~~l  250 (254)
                       .....+..    .  .++++.+++.   .+.++..||+||+||+++|++++.+  |+++|+|||+++||+..++.+.++
T Consensus        59 -~~~~~~~~----q--~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~  131 (176)
T cd03238          59 -RNKLIFID----Q--LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEV  131 (176)
T ss_pred             -cccEEEEh----H--HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHH
Confidence             00011100    0  4567777764   4567889999999999999999999  999999999999999999999988


Q ss_pred             hhc
Q 025366          251 FDE  253 (254)
Q Consensus       251 l~~  253 (254)
                      +.+
T Consensus       132 l~~  134 (176)
T cd03238         132 IKG  134 (176)
T ss_pred             HHH
Confidence            753

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.93  E-value=6.1e-26  Score=177.56  Aligned_cols=167  Identities=14%  Similarity=0.066  Sum_probs=130.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~  149 (254)
                      ++.++||+.+.++..    .|.++||+|.+|||+.|+||||||||||+..+.|.+...+...|+ .++++..      ..
T Consensus         2 ~l~l~nvsl~l~g~c----LLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qR   77 (213)
T COG4136           2 MLCLKNVSLRLPGSC----LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQR   77 (213)
T ss_pred             ceeeeeeeecCCCce----EEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhh
Confidence            467889998888754    569999999999999999999999999999999999866777898 5555321      34


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                      ..|. +.+|...++.  +++.+|+.+.... .+............++..++.  ....+.++|||||.|+++-|+++.+|
T Consensus        78 q~Gi-LFQD~lLFph--lsVg~Nl~fAlp~-~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~P  153 (213)
T COG4136          78 QIGI-LFQDALLFPH--LSVGQNLLFALPA-TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQP  153 (213)
T ss_pred             heee-eecccccccc--cccccceEEecCc-ccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCc
Confidence            4564 6777655443  7888887553211 011112334567788888876  46778899999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      +.+++||||+-||...+.+++++.
T Consensus       154 k~lLLDEPFS~LD~ALR~qfR~wV  177 (213)
T COG4136         154 KALLLDEPFSRLDVALRDQFRQWV  177 (213)
T ss_pred             ceeeeCCchhHHHHHHHHHHHHHH
Confidence            999999999999999999888865

>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.93  E-value=1.3e-25  Score=222.31  Aligned_cols=163  Identities=16%  Similarity=0.158  Sum_probs=129.6

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      -|+++||++.|+.+ ..+.+++|+||++++|+.+||+|||||||||.+.+|-.++.   |+.|. .+||...        
T Consensus       987 ~I~~~~V~F~YPsR-P~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYd---p~~G~V~IDg~dik~lnl~~L 1062 (1228)
T KOG0055|consen  987 DIEFRNVSFAYPTR-PDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYD---PDAGKVKIDGVDIKDLNLKWL 1062 (1228)
T ss_pred             EEEEeeeEeeCCCC-CCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcC---CCCCeEEECCcccccCCHHHH
Confidence            48999999999976 46778899999999999999999999999999999999998   99999 7787532        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHh---------hccCCCCCC----CCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGSVYA----PSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~l~~~~~~----~~lS~G~~  214 (254)
                      +...+. |.|..-.+.   -|..||+.+.     ... ...+++.+.++.         |-.+.+..+    .+||||||
T Consensus      1063 R~~i~l-VsQEP~LF~---~TIrENI~YG-----~~~-vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QLSGGQK 1132 (1228)
T KOG0055|consen 1063 RKQIGL-VSQEPVLFN---GTIRENIAYG-----SEE-VSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQLSGGQK 1132 (1228)
T ss_pred             HHhcce-eccCchhhc---ccHHHHHhcc-----CCC-CCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcCCchHH
Confidence            334554 666654433   4788888664     111 233444444443         333445444    48999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||++||||++++|+||||||.|+.||.++-+.+.+.||.
T Consensus      1133 QRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~ 1171 (1228)
T KOG0055|consen 1133 QRIAIARAILRNPKILLLDEATSALDSESERVVQEALDR 1171 (1228)
T ss_pred             HHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHH
Confidence            999999999999999999999999999999999999885

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=99.93  E-value=2.8e-25  Score=208.73  Aligned_cols=162  Identities=15%  Similarity=0.118  Sum_probs=127.2

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~  154 (254)
                      -.+++++|+++.|++. +.  +++++||.|.+|+.|||+||||+|||||+|+|+|.+.   |.+|++..|.  ....|+ 
T Consensus       319 ~~vl~~~~~~~~y~~~-~~--l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~---~~~G~v~~g~--~v~igy-  389 (530)
T COG0488         319 KLVLEFENVSKGYDGG-RL--LLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELG---PLSGTVKVGE--TVKIGY-  389 (530)
T ss_pred             CeeEEEeccccccCCC-ce--eecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcc---cCCceEEeCC--ceEEEE-
Confidence            4689999999999774 23  4599999999999999999999999999999999997   8899854443  233455 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI  231 (254)
                      +.++...+. ...++.+.+..   ..  + ......+...+..+++.   ...++..||||||.|+.+|+.+..+|.|||
T Consensus       390 f~Q~~~~l~-~~~t~~d~l~~---~~--~-~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLi  462 (530)
T COG0488         390 FDQHRDELD-PDKTVLEELSE---GF--P-DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLL  462 (530)
T ss_pred             EEehhhhcC-ccCcHHHHHHh---hC--c-cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEE
Confidence            565553332 22344443322   11  1 12257788999999987   356788999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHhh
Q 025366          232 VDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       232 lDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |||||+.||..+.+.+.+.|.
T Consensus       463 LDEPTNhLDi~s~~aLe~aL~  483 (530)
T COG0488         463 LDEPTNHLDIESLEALEEALL  483 (530)
T ss_pred             EcCCCccCCHHHHHHHHHHHH
Confidence            999999999999999988875

>KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only]

Probab=99.93  E-value=1.1e-25  Score=224.14  Aligned_cols=170  Identities=15%  Similarity=0.112  Sum_probs=144.9

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      ...+.+++++|.|+....   |++++++.|++||+.|++|+|||||||++++|+|..+   |++|+ .+.|...      
T Consensus       562 ~~~~~~~~L~k~y~~~~~---Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~---~t~G~a~i~g~~i~~~~~~  635 (885)
T KOG0059|consen  562 SSALVLNNLSKVYGGKDG---AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETK---PTSGEALIKGHDITVSTDF  635 (885)
T ss_pred             cceEEEcceeeeecchhh---hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCcc---CCcceEEEecCccccccch
Confidence            467899999999998543   7899999999999999999999999999999999998   99999 5555322      


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         ....|+ .++.+-...  .+|..|+..+..+..|+++......+..+++.+++.  .+..++.||||+|+|+.+|.|
T Consensus       636 ~~~~~~iGy-CPQ~d~l~~--~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~~~~~~~~~ySgG~kRkLs~aia  712 (885)
T KOG0059|consen  636 QQVRKQLGY-CPQFDALWE--ELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGPYANKQVRTYSGGNKRRLSFAIA  712 (885)
T ss_pred             hhhhhhccc-CCchhhhhh--hccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChhhhccchhhCCCcchhhHHHHHH
Confidence               223565 555544333  489999999999999998766666688899988886  567789999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|++++||||++|+||..++.+++++.+
T Consensus       713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~  743 (885)
T KOG0059|consen  713 LIGDPSVILLDEPSTGLDPKARRHLWDIIAR  743 (885)
T ss_pred             HhcCCCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999864

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=99.93  E-value=1.8e-25  Score=200.16  Aligned_cols=136  Identities=16%  Similarity=0.154  Sum_probs=105.2

Q ss_pred             EECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC
Q 025366          112 LAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (254)
Q Consensus       112 LiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~  184 (254)
                      |+||||||||||+++|+|+++   |++|+ .++|...      ....+. +.++...++  .+++.+++.+.....+...
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~---p~~G~I~i~g~~i~~~~~~~~~i~~-v~q~~~l~~--~~tv~enl~~~~~~~~~~~   74 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQ---PDSGSIMLDGEDVTNVPPHLRHINM-VFQSYALFP--HMTVEENVAFGLKMRKVPR   74 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCC---CCceEEEECCEECCCCCHHHCCEEE-EecCccccC--CCcHHHHHHHHHhhcCCCH
Confidence            689999999999999999997   99999 6666432      123454 555543222  3688898877654333322


Q ss_pred             CccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          185 TFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       185 ~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ......+.++++.+++.  .+.++.+||+||+||+++|+||+.+|++|||||||++||+..++.+.++|.+
T Consensus        75 ~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~  145 (325)
T TIGR01187        75 AEIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKT  145 (325)
T ss_pred             HHHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            22234567788888776  4677889999999999999999999999999999999999999999988854

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=9.6e-25  Score=181.61  Aligned_cols=173  Identities=20%  Similarity=0.141  Sum_probs=122.8

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |.+++++||...-++. +.  +|++|||+|++||+.+|+||||||||||.++|+|.-. --.++|+ .++|+..      
T Consensus         1 m~~L~I~dLhv~v~~~-ke--ILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~-Y~Vt~G~I~~~GedI~~l~~~   76 (251)
T COG0396           1 MMMLEIKDLHVEVEGK-KE--ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK-YEVTEGEILFDGEDILELSPD   76 (251)
T ss_pred             CceeEEeeeEEEecCc-hh--hhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC-ceEecceEEECCcccccCCHh
Confidence            5689999999999874 13  5699999999999999999999999999999999852 2267898 7787542      


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHH-HcCCCC--CccHHHHHHHHHhhccCC---CCCCC-CCChhhhhhHhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHA-RRGAPW--TFNPLLLLNCLKNLRNQG---SVYAP-SFDHGVGDPVED  219 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~-~~g~~~--~~~~~~~~~~l~~l~l~~---~~~~~-~lS~G~~qrv~i  219 (254)
                       +...|.++.++.. ..-+.++..+.+..... ..+...  ......+.+.++.+++..   ++++. -||||+|+|..+
T Consensus        77 ERAr~GifLafQ~P-~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Ei  155 (251)
T COG0396          77 ERARAGIFLAFQYP-VEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEI  155 (251)
T ss_pred             HHHhcCCEEeecCC-ccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHH
Confidence             2344544433321 11122333333332221 122111  122345567777777763   44444 699999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +..++.+|++.|||||-+|||..+-+.+.+.+.
T Consensus       156 lQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~  188 (251)
T COG0396         156 LQLLLLEPKLAILDEPDSGLDIDALKIVAEGIN  188 (251)
T ss_pred             HHHHhcCCCEEEecCCCcCccHHHHHHHHHHHH
Confidence            999999999999999999999998888877664

>PLN03232 ABC transporter C family member; Provisional

Probab=99.92  E-value=5.1e-25  Score=229.40  Aligned_cols=161  Identities=15%  Similarity=0.094  Sum_probs=126.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .|+++||+++|++..+.  +|+|+||+|++||.+||+|++|||||||+++|.|++.   |++|+ .++|...        
T Consensus      1234 ~I~f~nVsf~Y~~~~~~--vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~---p~~G~I~IdG~di~~i~~~~l 1308 (1495)
T PLN03232       1234 SIKFEDVHLRYRPGLPP--VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE---LEKGRIMIDDCDVAKFGLTDL 1308 (1495)
T ss_pred             cEEEEEEEEEECCCCCc--ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCceEEECCEEhhhCCHHHH
Confidence            59999999999653223  5699999999999999999999999999999999998   99999 6787432        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~  214 (254)
                      +...+ +|+|+.+.+.   -|+.+|+..       ....+.+++.++++..++.         .+..    ...||||||
T Consensus      1309 R~~i~-iVpQdp~LF~---gTIr~NL~~-------~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1377 (1495)
T PLN03232       1309 RRVLS-IIPQSPVLFS---GTVRFNIDP-------FSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQR 1377 (1495)
T ss_pred             HhhcE-EECCCCeeeC---ccHHHHcCC-------CCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHH
Confidence            23345 4888876554   366666532       1234456666666655442         2222    347999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|||++.+|+||||||||+.+|....+.|.+.+++
T Consensus      1378 QrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~ 1416 (1495)
T PLN03232       1378 QLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIRE 1416 (1495)
T ss_pred             HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888754

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=99.92  E-value=4e-25  Score=213.19  Aligned_cols=151  Identities=15%  Similarity=0.074  Sum_probs=118.6

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Cce-ecCCCCC-----CCCeEEEeeCCCCCCCCcC
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQ  166 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~---~G~-~~~~~~~-----~~~~g~~i~~~~~~~~~~~  166 (254)
                      +|+|+|+++++||+++|+||||||||||+++|+|...   +.   +|+ .++|...     +...++ +.+++..+.  .
T Consensus        40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~---~~~~~~G~i~~~g~~~~~~~~~~~i~y-v~Q~~~~~~--~  113 (617)
T TIGR00955        40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSP---KGVKGSGSVLLNGMPIDAKEMRAISAY-VQQDDLFIP--T  113 (617)
T ss_pred             cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEECCHHHHhhhcee-eccccccCc--c
Confidence            6699999999999999999999999999999999985   53   688 5676432     223465 677665443  3


Q ss_pred             CChhhcHHHHHHHcCCCC----CccHHHHHHHHHhhccC--CCCCCC------CCChhhhhhHhhhhhhcCCCcEEEEeC
Q 025366          167 LDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDG  234 (254)
Q Consensus       167 l~~~e~~~~~~~~~g~~~----~~~~~~~~~~l~~l~l~--~~~~~~------~lS~G~~qrv~ia~al~~~p~vlIlDE  234 (254)
                      +|+.|++.+..... .+.    ......+.++++.+++.  .+..+.      .+|||||||+.+|++|+.+|+++++||
T Consensus       114 lTV~e~l~f~~~~~-~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDE  192 (617)
T TIGR00955       114 LTVREHLMFQAHLR-MPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDE  192 (617)
T ss_pred             CcHHHHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeC
Confidence            79999998765432 222    22234578888888875  344443      599999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHhhc
Q 025366          235 NYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       235 p~~~lD~~~~~~l~~ll~~  253 (254)
                      ||++||+.....+.+.+++
T Consensus       193 PtsgLD~~~~~~l~~~L~~  211 (617)
T TIGR00955       193 PTSGLDSFMAYSVVQVLKG  211 (617)
T ss_pred             CCcchhHHHHHHHHHHHHH
Confidence            9999999999999988864

>PLN03130 ABC transporter C family member; Provisional

Probab=99.92  E-value=8.7e-25  Score=228.33  Aligned_cols=161  Identities=14%  Similarity=0.084  Sum_probs=127.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .|+++||+++|++..+.  +|+|+||+|++||.+||+|++|||||||+++|.|++.   |++|+ .+||...        
T Consensus      1237 ~I~f~nVsf~Y~~~~~~--VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~---p~~G~I~IDG~dI~~i~l~~L 1311 (1622)
T PLN03130       1237 SIKFEDVVLRYRPELPP--VLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVE---LERGRILIDGCDISKFGLMDL 1311 (1622)
T ss_pred             cEEEEEEEEEeCCCCCc--eecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC---CCCceEEECCEecccCCHHHH
Confidence            59999999999753223  5699999999999999999999999999999999998   99999 6787422        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCCCC----CCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYA----PSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~~----~~lS~G~~  214 (254)
                      +...+. |+|+.+.+.   -|+.+|+...       .....+.+.++++..++         +.+..+    ..||+|||
T Consensus      1312 R~~Isi-VpQdp~LF~---GTIreNLd~~-------~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQr 1380 (1622)
T PLN03130       1312 RKVLGI-IPQAPVLFS---GTVRFNLDPF-------NEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQR 1380 (1622)
T ss_pred             HhccEE-ECCCCcccc---ccHHHHhCcC-------CCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHH
Confidence            234454 888876554   3677766431       23345666666665544         233332    47999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++||||+.+|+||||||||+.+|....+.|.+.|++
T Consensus      1381 QrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~ 1419 (1622)
T PLN03130       1381 QLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIRE 1419 (1622)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888764

>PTZ00243 ABC transporter; Provisional

Probab=99.92  E-value=9.6e-25  Score=227.56  Aligned_cols=161  Identities=11%  Similarity=0.095  Sum_probs=127.8

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .|+++||+++|++...  .+|+|+||+|++||.|||+|++|||||||+++|.|++.   |++|+ .++|...        
T Consensus      1308 ~I~f~nVsf~Y~~~~~--~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~---p~~G~I~IDG~di~~i~l~~L 1382 (1560)
T PTZ00243       1308 SLVFEGVQMRYREGLP--LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVE---VCGGEIRVNGREIGAYGLREL 1382 (1560)
T ss_pred             eEEEEEEEEEeCCCCC--ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEEcccCCHHHH
Confidence            5999999999976322  25699999999999999999999999999999999998   99999 6787422        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCCC----CCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVYA----PSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~~----~~lS~G~~  214 (254)
                      +...+. |+++.+.+.   -|+.+|+..       ....+.+.+.++++..++.         .+..+    ..||+|||
T Consensus      1383 R~~I~i-VpQdp~LF~---gTIreNIdp-------~~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243       1383 RRQFSM-IPQDPVLFD---GTVRQNVDP-------FLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred             HhcceE-ECCCCcccc---ccHHHHhCc-------ccCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence            234454 888876554   367776632       1234556777777776653         22222    47999999


Q ss_pred             hhHhhhhhhcCC-CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~-p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||++|||||+.+ |+||||||||+.+|....+.|.+.|++
T Consensus      1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~ 1491 (1560)
T PTZ00243       1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMS 1491 (1560)
T ss_pred             HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            999999999985 899999999999999999999888753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=99.92  E-value=6.3e-26  Score=177.93  Aligned_cols=122  Identities=20%  Similarity=0.209  Sum_probs=88.8

Q ss_pred             ccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------CCCeEEEeeCCCCCCCCcCC
Q 025366           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------PPDVATVLPMDGFHLYLSQL  167 (254)
Q Consensus        97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------~~~~g~~i~~~~~~~~~~~l  167 (254)
                      |+|+||++++|++++|+|+||||||||+++|+|+.+   |++|+ .+++...        ....++ +.++......  +
T Consensus         1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~---~~~G~i~~~~~~~~~~~~~~~~~~i~~-~~~~~~~~~~--~   74 (137)
T PF00005_consen    1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLP---PDSGSILINGKDISDIDIEELRRRIGY-VPQDPQLFPG--L   74 (137)
T ss_dssp             EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSH---ESEEEEEETTEEGTTSHHHHHHHTEEE-EESSHCHHTT--S
T ss_pred             CCceEEEEcCCCEEEEEccCCCccccceeeeccccc---ccccccccccccccccccccccccccc-cccccccccc--c
Confidence            589999999999999999999999999999999997   77777 4554221        122333 4444221111  2


Q ss_pred             ChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC--CCC----CCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC
Q 025366          168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG--SVY----APSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (254)
Q Consensus       168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~--~~~----~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~  237 (254)
                      ++.++             ........+++.+++..  ...    ...||+||+||+++|++++.+|++||+||||+
T Consensus        75 tv~~~-------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~  137 (137)
T PF00005_consen   75 TVREN-------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN  137 (137)
T ss_dssp             BHHHH-------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred             ccccc-------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence            33332             22345666777766542  333    38999999999999999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=99.92  E-value=3e-25  Score=182.93  Aligned_cols=172  Identities=17%  Similarity=0.099  Sum_probs=129.2

Q ss_pred             eEEEecceeecccc-cceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           77 VVEARCMDEVYDAL-AQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~-~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      |+++.|+.+.|... .....++++++++|.+|+++.|+|.||||||||++.|+|.+.   |++|+ .++|..+.      
T Consensus         1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~---~t~G~I~Idg~dVtk~~~~~   77 (263)
T COG1101           1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLK---PTSGQILIDGVDVTKKSVAK   77 (263)
T ss_pred             CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccc---cCCceEEECceecccCCHHH
Confidence            35677888887542 223347799999999999999999999999999999999998   99999 66774321      


Q ss_pred             -C-CeEEEeeCCCCCCCCcCCChhhcHHHHHHH---cCCCCC---ccHHHHHHHHHhhccC----CCCCCCCCChhhhhh
Q 025366          149 -P-DVATVLPMDGFHLYLSQLDAMEDPKEAHAR---RGAPWT---FNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDP  216 (254)
Q Consensus       149 -~-~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~---~g~~~~---~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qr  216 (254)
                       . .... |.+|...-..+.+|+.||+.....+   +|+...   .....+.+-+..++++    ...++.-|||||||-
T Consensus        78 RA~~lar-VfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQa  156 (263)
T COG1101          78 RANLLAR-VFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQA  156 (263)
T ss_pred             HhhHHHH-HhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHH
Confidence             1 1122 5566554445568999998766543   333221   1223345566666665    456778899999999


Q ss_pred             HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +.++.|...+|+||+|||.|+.|||...+.++++-+
T Consensus       157 lsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~  192 (263)
T COG1101         157 LSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTA  192 (263)
T ss_pred             HHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHH
Confidence            999999999999999999999999999888887643

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.92  E-value=1.2e-24  Score=226.80  Aligned_cols=161  Identities=15%  Similarity=0.059  Sum_probs=127.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .|+++||+++|+...+.  +|+|+||+|++||.+||+|++|||||||+++|.|++.   |++|+ .++|...        
T Consensus      1284 ~I~f~nVsf~Y~~~~~~--vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~---~~~G~I~IdG~dI~~i~~~~L 1358 (1522)
T TIGR00957      1284 RVEFRNYCLRYREDLDL--VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINE---SAEGEIIIDGLNIAKIGLHDL 1358 (1522)
T ss_pred             cEEEEEEEEEeCCCCcc--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcc---CCCCeEEECCEEccccCHHHH
Confidence            59999999999763222  6799999999999999999999999999999999998   99999 6787422        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCCC----CCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVYA----PSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~~----~~lS~G~~  214 (254)
                      +...+. |+|+.+.+.   -|+.+|+..    +   .....+.+.++++..++.         .+..+    ..||+|||
T Consensus      1359 R~~i~i-VpQdp~LF~---gTIr~NLdp----~---~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQr 1427 (1522)
T TIGR00957      1359 RFKITI-IPQDPVLFS---GSLRMNLDP----F---SQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQR 1427 (1522)
T ss_pred             HhcCeE-ECCCCcccC---ccHHHHcCc----c---cCCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHH
Confidence            234454 888876654   266666532    1   134456666777765542         23333    46999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|||++.+|+||||||||+.+|....+.|.+.|++
T Consensus      1428 Qrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~ 1466 (1522)
T TIGR00957      1428 QLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRT 1466 (1522)
T ss_pred             HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888754

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03140 ABC transporter G family member; Provisional

Probab=99.92  E-value=1.7e-24  Score=223.85  Aligned_cols=172  Identities=13%  Similarity=0.054  Sum_probs=128.0

Q ss_pred             eEEEecceeeccccc---------ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC
Q 025366           77 VVEARCMDEVYDALA---------QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV  146 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~---------~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~  146 (254)
                      .+..+||++..+...         ....+|+|+|+.+++|++++|+||||||||||+++|+|+.. ..+.+|+ .++|..
T Consensus       867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~-~g~~~G~I~inG~~  945 (1470)
T PLN03140        867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKT-GGYIEGDIRISGFP  945 (1470)
T ss_pred             eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCC-CCcccceEEECCcc
Confidence            488999988874210         12236799999999999999999999999999999999863 1125788 566643


Q ss_pred             CC-----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC----ccHHHHHHHHHhhccCC--CCCC-----CCCC
Q 025366          147 KP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----FNPLLLLNCLKNLRNQG--SVYA-----PSFD  210 (254)
Q Consensus       147 ~~-----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~----~~~~~~~~~l~~l~l~~--~~~~-----~~lS  210 (254)
                      ..     ...|+ +.+++...+  .+|+.|++.+..... .+..    .....+.++++.+++..  +..+     ..||
T Consensus       946 ~~~~~~~~~igy-v~Q~d~~~~--~lTV~E~L~~~a~lr-~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140        946 KKQETFARISGY-CEQNDIHSP--QVTVRESLIYSAFLR-LPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred             CChHHhhhheEE-EccccccCC--CCcHHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence            21     23455 666654433  379999988754322 2221    12234677888888752  3333     5899


Q ss_pred             hhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       211 ~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||||+.||++|+.+|+||+|||||++||+.....+.+++.+
T Consensus      1022 gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~ 1064 (1470)
T PLN03140       1022 TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRN 1064 (1470)
T ss_pred             HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998854

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.91  E-value=3.5e-24  Score=223.00  Aligned_cols=160  Identities=14%  Similarity=0.146  Sum_probs=126.7

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .|+++||+++|+...+.  +|+|+||+|++|+.+||+|++|||||||+++|+|++    +.+|+ .++|...        
T Consensus      1217 ~I~f~nVs~~Y~~~~~~--vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~----~~~G~I~IdG~di~~i~~~~l 1290 (1490)
T TIGR01271      1217 QMDVQGLTAKYTEAGRA--VLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLL----STEGEIQIDGVSWNSVTLQTW 1290 (1490)
T ss_pred             eEEEEEEEEEeCCCCcc--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhc----CCCcEEEECCEEcccCCHHHH
Confidence            59999999999753223  669999999999999999999999999999999998    57899 6777322        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCCC----CCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVYA----PSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~~----~~lS~G~~  214 (254)
                      +...+ +|+++.+.+.   -|+.+|+..       ......+.+.++++.+++.         .+..+    ..||+|||
T Consensus      1291 R~~is-~IpQdp~LF~---GTIR~NLdp-------~~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271      1291 RKAFG-VIPQKVFIFS---GTFRKNLDP-------YEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred             HhceE-EEeCCCccCc---cCHHHHhCc-------ccCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence            23345 4888887654   367776632       1234567777888876653         22222    36999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++||||+.+|+||||||||+++|....+.|.+.|.+
T Consensus      1360 QrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~ 1398 (1490)
T TIGR01271      1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQ 1398 (1490)
T ss_pred             HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=99.91  E-value=1.2e-23  Score=219.51  Aligned_cols=154  Identities=13%  Similarity=0.113  Sum_probs=117.6

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEe
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVL  155 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i  155 (254)
                      .++++|+++.|++..+.  +|+|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|     ..++ +
T Consensus       636 ~i~~~~~~~~~~~~~~~--~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~---~~~G~i~~~g-----~i~y-v  704 (1522)
T TIGR00957       636 SITVHNATFTWARDLPP--TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVHMKG-----SVAY-V  704 (1522)
T ss_pred             cEEEEEeEEEcCCCCCc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---cCCcEEEECC-----EEEE-E
Confidence            69999999999753222  5699999999999999999999999999999999997   99999 4554     2454 6


Q ss_pred             eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhc------c---CC----CCCCCCCChhhhhhHhhhhh
Q 025366          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR------N---QG----SVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~------l---~~----~~~~~~lS~G~~qrv~ia~a  222 (254)
                      .++.... +  .++.+|+.+.     .+  ++.+...++++...      .   +.    ......||||||||+++|||
T Consensus       705 ~Q~~~l~-~--~Ti~eNI~~g-----~~--~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARA  774 (1522)
T TIGR00957       705 PQQAWIQ-N--DSLRENILFG-----KA--LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARA  774 (1522)
T ss_pred             cCCcccc-C--CcHHHHhhcC-----Cc--cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHH
Confidence            6765432 2  4777776542     11  22233333333222      1   11    23456899999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      +..+|+++||||||++||+...+.+.+.+
T Consensus       775 l~~~~~illLDEp~saLD~~~~~~i~~~l  803 (1522)
T TIGR00957       775 VYSNADIYLFDDPLSAVDAHVGKHIFEHV  803 (1522)
T ss_pred             HhcCCCEEEEcCCccccCHHHHHHHHHHH
Confidence            99999999999999999999999998776

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.90  E-value=1.7e-23  Score=200.97  Aligned_cols=173  Identities=13%  Similarity=0.099  Sum_probs=133.2

Q ss_pred             eEEEecceeeccccc-ceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CC
Q 025366           77 VVEARCMDEVYDALA-QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PP  149 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~-~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~  149 (254)
                      .+..++++....+.. ....+|++|+..+++||+.||+||+|||||||+++|+|....-...+|+ .++|+..     +.
T Consensus        25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~~~~~~  104 (613)
T KOG0061|consen   25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDSRSFRK  104 (613)
T ss_pred             eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCchhhhhh
Confidence            356667666665431 1122569999999999999999999999999999999998521246788 6777332     33


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC----CccHHHHHHHHHhhccC--CCCCC-----CCCChhhhhhHh
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW----TFNPLLLLNCLKNLRNQ--GSVYA-----PSFDHGVGDPVE  218 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~----~~~~~~~~~~l~~l~l~--~~~~~-----~~lS~G~~qrv~  218 (254)
                      ..|+ +.||+..++.  +|+.|.+.+.... ..+.    ....+++.++++.+++.  .+..+     ..+|||||+||+
T Consensus       105 ~s~y-V~QdD~l~~~--LTV~EtL~f~A~l-rlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvs  180 (613)
T KOG0061|consen  105 ISGY-VQQDDVLLPT--LTVRETLRFSALL-RLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVS  180 (613)
T ss_pred             eeEE-Eccccccccc--ccHHHHHHHHHHh-cCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHH
Confidence            4565 8888876655  8999998876543 3444    34456778899998886  34444     469999999999


Q ss_pred             hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|..++.+|.||++||||+|||.....++.+++++
T Consensus       181 ia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~  215 (613)
T KOG0061|consen  181 IALELLTDPSILFLDEPTSGLDSFSALQVVQLLKR  215 (613)
T ss_pred             HHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHH
Confidence            99999999999999999999999999999988864

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=99.90  E-value=8.5e-24  Score=218.72  Aligned_cols=155  Identities=14%  Similarity=0.049  Sum_probs=116.5

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcc-cCCCCce-ecCCCCC-------CCCeEEEeeCCCCCCCCcC
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINK-IWPQKAS-SFDSQVK-------PPDVATVLPMDGFHLYLSQ  166 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~-~~p~~G~-~~~~~~~-------~~~~g~~i~~~~~~~~~~~  166 (254)
                      +|+|+|+.+++||+++|+||||||||||+|+|+|+... ..|++|+ .++|...       +...++ +.+++..++  .
T Consensus        76 iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~y-v~Q~d~~~~--~  152 (1394)
T TIGR00956        76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVY-NAETDVHFP--H  152 (1394)
T ss_pred             eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEE-eccccccCC--C
Confidence            67999999999999999999999999999999998621 1268999 6666421       122454 666654443  3


Q ss_pred             CChhhcHHHHHHHcCC---CCCcc----HHH-HHHHHHhhccCC-------CCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366          167 LDAMEDPKEAHARRGA---PWTFN----PLL-LLNCLKNLRNQG-------SVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (254)
Q Consensus       167 l~~~e~~~~~~~~~g~---~~~~~----~~~-~~~~l~~l~l~~-------~~~~~~lS~G~~qrv~ia~al~~~p~vlI  231 (254)
                      +++.|++.+......-   .....    ... ...+++.+++..       +..+..+||||||||.||++|+.+|+|++
T Consensus       153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vll  232 (1394)
T TIGR00956       153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQC  232 (1394)
T ss_pred             CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEEE
Confidence            8999998876543210   00111    112 245678787753       22456899999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHhhc
Q 025366          232 VDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       232 lDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||||++||+....++.++|.+
T Consensus       233 lDEPTsgLD~~~~~~i~~~L~~  254 (1394)
T TIGR00956       233 WDNATRGLDSATALEFIRALKT  254 (1394)
T ss_pred             EeCCCCCcCHHHHHHHHHHHHH
Confidence            9999999999999999998864

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.90  E-value=2.4e-23  Score=177.38  Aligned_cols=154  Identities=14%  Similarity=0.032  Sum_probs=93.0

Q ss_pred             ccccceeeeeCCCeEEEEECCCCCcHHHHH-HHHHHhhc-----ccCCCCceecCCCCCCC--------CeEEEeeCCCC
Q 025366           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLA-AEVVRRIN-----KIWPQKASSFDSQVKPP--------DVATVLPMDGF  160 (254)
Q Consensus        95 lal~~vsl~i~~GeivgLiGpNGsGKSTLl-k~L~Gll~-----~~~p~~G~~~~~~~~~~--------~~g~~i~~~~~  160 (254)
                      .+++++||++++||++||+|+||||||||+ ..|...-+     ..-+..+.. .+....+        .... ..++..
T Consensus         9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~   86 (226)
T cd03270           9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQF-LGQMDKPDVDSIEGLSPAI-AIDQKT   86 (226)
T ss_pred             hccccceeecCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHHhhcccchhhhh-hcccCccccccccCCCceE-EecCCC
Confidence            377999999999999999999999999996 33331100     000000000 0000000        1111 112221


Q ss_pred             CCCCcCCChh---hcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC--cEEEE
Q 025366          161 HLYLSQLDAM---EDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIV  232 (254)
Q Consensus       161 ~~~~~~l~~~---e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p--~vlIl  232 (254)
                      ....+..++.   +...+...   +..........+.++.+++.   .+.++.+||+||+||+++|++++.+|  ++||+
T Consensus        87 ~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~~~llll  163 (226)
T cd03270          87 TSRNPRSTVGTVTEIYDYLRL---LFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGVLYVL  163 (226)
T ss_pred             CCCCCCccHHHHHHHHHHHHH---HhhhhhHHHHHHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhCCCCCEEEE
Confidence            1111111211   11111111   11111122335678888775   46688899999999999999999998  59999


Q ss_pred             eCCCCCCCHHHHHHHHHHhhc
Q 025366          233 DGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       233 DEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||++||+..+..+.++|.+
T Consensus       164 DEPt~gLD~~~~~~l~~~l~~  184 (226)
T cd03270         164 DEPSIGLHPRDNDRLIETLKR  184 (226)
T ss_pred             eCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999998853

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=99.90  E-value=9.1e-24  Score=192.35  Aligned_cols=162  Identities=16%  Similarity=0.115  Sum_probs=121.2

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC--------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------  146 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~--------  146 (254)
                      ..+.++++...=.+.++.  +++++||++.+|+.+||+||||||||||.|+|.|..+   |.+|. .+||-.        
T Consensus       333 g~L~Ve~l~~~PPg~~~p--il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~---p~~G~VRLDga~l~qWd~e~  407 (580)
T COG4618         333 GALSVERLTAAPPGQKKP--ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWP---PTSGSVRLDGADLRQWDREQ  407 (580)
T ss_pred             ceeeEeeeeecCCCCCCc--ceecceeEecCCceEEEECCCCccHHHHHHHHHcccc---cCCCcEEecchhhhcCCHHH
Confidence            368999999877664434  5599999999999999999999999999999999997   99999 677722        


Q ss_pred             CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHH---------HHHHHhhccCCCCCCC----CCChhh
Q 025366          147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLL---------LNCLKNLRNQGSVYAP----SFDHGV  213 (254)
Q Consensus       147 ~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~---------~~~l~~l~l~~~~~~~----~lS~G~  213 (254)
                      ....+|+ .++|=..+.   =|+.||+..    ++  ++.+.+.+         .+++-.+-.+.+..+.    .|||||
T Consensus       408 lG~hiGY-LPQdVeLF~---GTIaeNIaR----f~--~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQ  477 (580)
T COG4618         408 LGRHIGY-LPQDVELFD---GTIAENIAR----FG--EEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQ  477 (580)
T ss_pred             hccccCc-CcccceecC---CcHHHHHHh----cc--ccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchH
Confidence            1234554 555544333   366666643    22  12233333         3444444445555544    799999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |||+++|||+..+|.+++||||-+.||......+.+.|.
T Consensus       478 RQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~  516 (580)
T COG4618         478 RQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAIL  516 (580)
T ss_pred             HHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHH
Confidence            999999999999999999999999999998888877664

>PLN03232 ABC transporter C family member; Provisional

Probab=99.90  E-value=2.1e-23  Score=217.41  Aligned_cols=155  Identities=17%  Similarity=0.143  Sum_probs=118.6

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (254)
                      .++++|+++.|+...+ ..+|+|+||++++|+.++|+||+|||||||+++|.|++.   |++|....   .+...++ +.
T Consensus       614 ~I~~~~vsF~y~~~~~-~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~G~i~~---~~~~Iay-v~  685 (1495)
T PLN03232        614 AISIKNGYFSWDSKTS-KPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELS---HAETSSVV---IRGSVAY-VP  685 (1495)
T ss_pred             cEEEEeeEEEcCCCCC-CceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCc---ccCCCEEE---ecCcEEE-Ec
Confidence            5899999999975211 125699999999999999999999999999999999997   88886211   1233454 77


Q ss_pred             CCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhhhhHhhhhhh
Q 025366          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVGDPVEDDILV  223 (254)
Q Consensus       157 ~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~qrv~ia~al  223 (254)
                      |+...+.   -|+.||+.+.     .  .++.+++.++++..++.         .+..    -..||||||||+++|||+
T Consensus       686 Q~p~Lf~---gTIreNI~fg-----~--~~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAl  755 (1495)
T PLN03232        686 QVSWIFN---ATVRENILFG-----S--DFESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAV  755 (1495)
T ss_pred             Ccccccc---ccHHHHhhcC-----C--ccCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHH
Confidence            7765543   4788877543     2  23556666666655542         2222    236999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSS  249 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~  249 (254)
                      ..+|+|+||||||++||+...+++.+
T Consensus       756 y~~~~IlLLDEptSaLD~~t~~~I~~  781 (1495)
T PLN03232        756 YSNSDIYIFDDPLSALDAHVAHQVFD  781 (1495)
T ss_pred             hcCCCEEEEcCCccccCHHHHHHHHH
Confidence            99999999999999999998877754

>PLN03140 ABC transporter G family member; Provisional

Probab=99.90  E-value=1.7e-23  Score=216.50  Aligned_cols=153  Identities=15%  Similarity=0.148  Sum_probs=118.5

Q ss_pred             ccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC---Cce-ecCCCCC-----CCCeEEEeeCCCCCCCCc
Q 025366           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ---KAS-SFDSQVK-----PPDVATVLPMDGFHLYLS  165 (254)
Q Consensus        95 lal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~---~G~-~~~~~~~-----~~~~g~~i~~~~~~~~~~  165 (254)
                      .+|+|+|+.+++|++++|+||||||||||||+|+|++.   |+   +|+ .++|...     +...++ +.+++.++.  
T Consensus       179 ~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~---~~~~~~G~I~~nG~~~~~~~~~~~i~y-v~Q~d~~~~--  252 (1470)
T PLN03140        179 TILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLD---PSLKVSGEITYNGYRLNEFVPRKTSAY-ISQNDVHVG--  252 (1470)
T ss_pred             eeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCC---CCCcceeEEEECCEechhhcccceeEE-ecccccCCC--
Confidence            36799999999999999999999999999999999997   77   899 6676432     233454 667655444  


Q ss_pred             CCChhhcHHHHHHHcCCCC----------C---------ccH---------------HHHHHHHHhhccCC-------CC
Q 025366          166 QLDAMEDPKEAHARRGAPW----------T---------FNP---------------LLLLNCLKNLRNQG-------SV  204 (254)
Q Consensus       166 ~l~~~e~~~~~~~~~g~~~----------~---------~~~---------------~~~~~~l~~l~l~~-------~~  204 (254)
                      .+|+.|++.+.....+...          .         .+.               .....+++.+++..       +.
T Consensus       253 ~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~  332 (1470)
T PLN03140        253 VMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDE  332 (1470)
T ss_pred             cCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCc
Confidence            3899999988654432110          0         000               11345777787752       44


Q ss_pred             CCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       205 ~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+..+||||||||.+|++++.+|+++++||||+|||.....++.+.+.+
T Consensus       333 ~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~  381 (1470)
T PLN03140        333 MIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQ  381 (1470)
T ss_pred             cccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHH
Confidence            5679999999999999999999999999999999999999999988753

>PLN03130 ABC transporter C family member; Provisional

Probab=99.90  E-value=3e-23  Score=216.89  Aligned_cols=155  Identities=20%  Similarity=0.205  Sum_probs=119.3

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-ceecCCCCCCCCeEEE
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATV  154 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~-G~~~~~~~~~~~~g~~  154 (254)
                      ..++++|+++.|+.... ..+|+|+||++++|+.++|+||+|||||||+++|.|.+.   |++ |++..    ....++ 
T Consensus       613 ~~I~~~nvsf~y~~~~~-~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~---~~~GG~I~l----~~~Iay-  683 (1622)
T PLN03130        613 PAISIKNGYFSWDSKAE-RPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELP---PRSDASVVI----RGTVAY-  683 (1622)
T ss_pred             CceEEEeeEEEccCCCC-CceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhc---cCCCceEEE----cCeEEE-
Confidence            35999999999975211 125699999999999999999999999999999999997   898 88321    233454 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCC----CCCCChhhhhhHhhhh
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVY----APSFDHGVGDPVEDDI  221 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~----~~~lS~G~~qrv~ia~  221 (254)
                      +.++...+.   -|+.+|+.+.     .  .++.+++.++++..++.         .+..    -..||||||||+++||
T Consensus       684 v~Q~p~Lfn---gTIreNI~fg-----~--~~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLAR  753 (1622)
T PLN03130        684 VPQVSWIFN---ATVRDNILFG-----S--PFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMAR  753 (1622)
T ss_pred             EcCccccCC---CCHHHHHhCC-----C--cccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHH
Confidence            777765544   4788877542     2  23556667776665542         2222    3469999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~  249 (254)
                      |+..+|+|+||||||++||+...+++.+
T Consensus       754 Aly~~~~IlLLDEptSALD~~~~~~I~~  781 (1622)
T PLN03130        754 AVYSNSDVYIFDDPLSALDAHVGRQVFD  781 (1622)
T ss_pred             HHhCCCCEEEECCCccccCHHHHHHHHH
Confidence            9999999999999999999988777643

>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.3e-23  Score=190.54  Aligned_cols=161  Identities=18%  Similarity=0.174  Sum_probs=118.2

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      -.++++||++.|+... .  +|+||||++.+|+.++|+||||+||||++|+|..+..   -.+|. .+||+..       
T Consensus       536 G~i~fsnvtF~Y~p~k-~--vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffd---v~sGsI~iDgqdIrnvt~~S  609 (790)
T KOG0056|consen  536 GKIEFSNVTFAYDPGK-P--VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFD---VNSGSITIDGQDIRNVTQSS  609 (790)
T ss_pred             CeEEEEEeEEecCCCC-c--eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhh---ccCceEEEcCchHHHHHHHH
Confidence            4699999999998742 3  5699999999999999999999999999999999997   88999 6888543       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhh-------ccC--CCC----CCCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNL-------RNQ--GSV----YAPSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l-------~l~--~~~----~~~~lS~G~  213 (254)
                       +..+|. +++|.-.+.   -+...|+++     +-+.+.+ +++.+..+.-       .+.  .+.    +--.||||+
T Consensus       610 LRs~IGV-VPQDtvLFN---dTI~yNIry-----ak~~Asn-eevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGE  679 (790)
T KOG0056|consen  610 LRSSIGV-VPQDTVLFN---DTILYNIRY-----AKPSASN-EEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGE  679 (790)
T ss_pred             HHHhcCc-ccCcceeec---ceeeeheee-----cCCCCCh-HHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcc
Confidence             344564 677764333   244444433     2233222 2222222211       221  122    223799999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ||||++||++...|.+++|||.|+.||....+.|...+.
T Consensus       680 KQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~  718 (790)
T KOG0056|consen  680 KQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALA  718 (790)
T ss_pred             hhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHH
Confidence            999999999999999999999999999999888877664

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=99.88  E-value=7e-23  Score=213.29  Aligned_cols=136  Identities=11%  Similarity=0.159  Sum_probs=103.7

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~  174 (254)
                      +|+|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|     ..++ +.++...+.   .++.+|+.
T Consensus       441 ~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~---~~~G~i~~~g-----~iay-v~Q~~~l~~---~Ti~eNI~  508 (1490)
T TIGR01271       441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELE---PSEGKIKHSG-----RISF-SPQTSWIMP---GTIKDNII  508 (1490)
T ss_pred             ceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECC-----EEEE-EeCCCccCC---ccHHHHHH
Confidence            6799999999999999999999999999999999998   99999 5554     2454 666654332   47888876


Q ss_pred             HHHHHcCCCCCccHHHHH---------HHHHhhccCC----CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          175 EAHARRGAPWTFNPLLLL---------NCLKNLRNQG----SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       175 ~~~~~~g~~~~~~~~~~~---------~~l~~l~l~~----~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                      +...       ++.....         +.++.+..+.    ......||||||||+++|||++.+|+++|||||+++||+
T Consensus       509 ~g~~-------~~~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~  581 (1490)
T TIGR01271       509 FGLS-------YDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDV  581 (1490)
T ss_pred             hccc-------cchHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence            5321       1111122         2222222222    123568999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 025366          242 GVWKDVSSM  250 (254)
Q Consensus       242 ~~~~~l~~l  250 (254)
                      ...+.+.+.
T Consensus       582 ~~~~~i~~~  590 (1490)
T TIGR01271       582 VTEKEIFES  590 (1490)
T ss_pred             HHHHHHHHH
Confidence            999999874

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.88  E-value=2.4e-22  Score=184.15  Aligned_cols=164  Identities=18%  Similarity=0.127  Sum_probs=122.3

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceec-CCCCCCCCeEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF-DSQVKPPDVAT  153 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~-~~~~~~~~~g~  153 (254)
                      -|.+.+.|+++.|.+.. .  .+++++|.++.++.++++||||||||||+|+++|.+.   |..|.+. ..+..-+   .
T Consensus       387 ~pvi~~~nv~F~y~~~~-~--iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~---p~~G~vs~~~H~~~~---~  457 (614)
T KOG0927|consen  387 PPVIMVQNVSFGYSDNP-M--IYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQ---PTIGMVSRHSHNKLP---R  457 (614)
T ss_pred             CCeEEEeccccCCCCcc-h--hhhhhhcccCcccceeEecCCCCchhhhHHHHhhccc---cccccccccccccch---h
Confidence            57899999999998743 2  5699999999999999999999999999999999997   8888732 2111111   0


Q ss_pred             EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (254)
Q Consensus       154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vl  230 (254)
                       +.+.-.....-..+..   ++....+  +.....+.+..++..+++.   ...++.+||.|||.||.+|+.++.+|.+|
T Consensus       458 -y~Qh~~e~ldl~~s~l---e~~~~~~--~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lL  531 (614)
T KOG0927|consen  458 -YNQHLAEQLDLDKSSL---EFMMPKF--PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLL  531 (614)
T ss_pred             -hhhhhHhhcCcchhHH---HHHHHhc--cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEE
Confidence             1111000000001111   2222222  2245567889999999987   45677899999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHhhc
Q 025366          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       231 IlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||||++||.+....+.+.|.+
T Consensus       532 lLDEPtnhLDi~tid~laeaiNe  554 (614)
T KOG0927|consen  532 LLDEPTNHLDIETIDALAEAINE  554 (614)
T ss_pred             EecCCCcCCCchhHHHHHHHHhc
Confidence            99999999999999999998875

>PTZ00243 ABC transporter; Provisional

Probab=99.87  E-value=1.2e-21  Score=204.45  Aligned_cols=136  Identities=16%  Similarity=0.111  Sum_probs=101.8

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      +|+|+||++++|++++|+||||||||||+++|+|+++   |++|++..    ....++ +.++... +.  .++.+|+.+
T Consensus       675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~---~~~G~i~~----~~~i~y-v~Q~~~l-~~--~Tv~enI~~  743 (1560)
T PTZ00243        675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFE---ISEGRVWA----ERSIAY-VPQQAWI-MN--ATVRGNILF  743 (1560)
T ss_pred             eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEE----CCeEEE-EeCCCcc-CC--CcHHHHHHc
Confidence            5699999999999999999999999999999999997   99998322    123554 6666543 22  577787755


Q ss_pred             HHHHcCCCCCccHHHH---------HHHHHhh--ccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH
Q 025366          176 AHARRGAPWTFNPLLL---------LNCLKNL--RNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (254)
Q Consensus       176 ~~~~~g~~~~~~~~~~---------~~~l~~l--~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~  242 (254)
                      ..     +  .+....         .+.++.+  ++.  .......||||||||+++|||++.+|+++|||||+++||+.
T Consensus       744 ~~-----~--~~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~  816 (1560)
T PTZ00243        744 FD-----E--EDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH  816 (1560)
T ss_pred             CC-----h--hhHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence            21     1  111112         2233333  121  23456789999999999999999999999999999999998


Q ss_pred             HHHHHHH
Q 025366          243 VWKDVSS  249 (254)
Q Consensus       243 ~~~~l~~  249 (254)
                      ..+.+.+
T Consensus       817 ~~~~i~~  823 (1560)
T PTZ00243        817 VGERVVE  823 (1560)
T ss_pred             HHHHHHH
Confidence            8877765

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=99.86  E-value=1.2e-21  Score=163.57  Aligned_cols=130  Identities=12%  Similarity=0.088  Sum_probs=91.3

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc---------e-ecCCCCC-----CCCeEEEeeCCCCCC
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA---------S-SFDSQVK-----PPDVATVLPMDGFHL  162 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G---------~-~~~~~~~-----~~~~g~~i~~~~~~~  162 (254)
                      +++++++++| +++|+||||||||||+++|+|++.   +..|         + .+.+...     ...++. +.++....
T Consensus        14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-vfq~~~~~   88 (197)
T cd03278          14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLG---EQSAKSLRGEKMSDVIFAGSETRKPANFAEVTL-TFDNSDGR   88 (197)
T ss_pred             CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhc---cccchhhcccCHHHHhccCCCCCCCCceEEEEE-EEEcCCCc
Confidence            6789999999 999999999999999999999985   4433         2 2222211     111222 33322111


Q ss_pred             CCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhc----CCCcEEEEeCCCCC
Q 025366          163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLF  238 (254)
Q Consensus       163 ~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~----~~p~vlIlDEp~~~  238 (254)
                                       ++..   ....+.++++. .-..+..+..||+||+||+++|++++    .+|+++|+|||+++
T Consensus        89 -----------------~~~~---~~~~~~~~l~~-~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~  147 (197)
T cd03278          89 -----------------YSII---SQGDVSEIIEA-PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAA  147 (197)
T ss_pred             -----------------eeEE---ehhhHHHHHhC-CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCccc
Confidence                             1100   12344555555 22356678899999999999999986    46799999999999


Q ss_pred             CCHHHHHHHHHHhhc
Q 025366          239 LDGGVWKDVSSMFDE  253 (254)
Q Consensus       239 lD~~~~~~l~~ll~~  253 (254)
                      ||+..+..+.+++.+
T Consensus       148 LD~~~~~~l~~~l~~  162 (197)
T cd03278         148 LDDANVERFARLLKE  162 (197)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999998864

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=99.85  E-value=8.6e-21  Score=178.47  Aligned_cols=157  Identities=17%  Similarity=0.092  Sum_probs=119.9

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-ceecCCCCCCCCe-EE
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDV-AT  153 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~-G~~~~~~~~~~~~-g~  153 (254)
                      ..|.++||+..-++..  + .+++.+|++++|+-+.|.|+||||||||+|.|+|+-    |.. |++.-    +.+. -.
T Consensus       391 ~~i~~~nl~l~~p~~~--~-ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLW----P~g~G~I~~----P~~~~~l  459 (604)
T COG4178         391 HGITLENLSLRTPDGQ--T-LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLW----PWGSGRISM----PADSALL  459 (604)
T ss_pred             ceeEEeeeeEECCCCC--e-eeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccC----ccCCCceec----CCCCceE
Confidence            6799999999998843  3 469999999999999999999999999999999986    543 33110    1111 12


Q ss_pred             EeeCCCCCCCCcCCChhhcHHHHHHHcCCCC---CccHHHHHHHHHhhccC--------CCCCCCCCChhhhhhHhhhhh
Q 025366          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPW---TFNPLLLLNCLKNLRNQ--------GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~---~~~~~~~~~~l~~l~l~--------~~~~~~~lS~G~~qrv~ia~a  222 (254)
                      ++++..|...   -+..       ...-+|.   .+..+.+.++|..++++        .+.+-..||+|||||+++||.
T Consensus       460 flpQ~PY~p~---GtLr-------e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARi  529 (604)
T COG4178         460 FLPQRPYLPQ---GTLR-------EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARL  529 (604)
T ss_pred             EecCCCCCCC---ccHH-------HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHH
Confidence            3444444221   1221       2222332   36678888999998886        345667899999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.++|++++|||-|++||+.....+.+++++
T Consensus       530 lL~kP~~v~LDEATsALDe~~e~~l~q~l~~  560 (604)
T COG4178         530 LLHKPKWVFLDEATSALDEETEDRLYQLLKE  560 (604)
T ss_pred             HHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence            9999999999999999999999999999875

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.84  E-value=3.3e-21  Score=165.50  Aligned_cols=51  Identities=16%  Similarity=0.101  Sum_probs=45.8

Q ss_pred             CCCCCCCChhhhhhHhhhhhhc----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          203 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       203 ~~~~~~lS~G~~qrv~ia~al~----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +..+..||+||+||+++|++++    .+|+++|+|||+++||+..++.+.+.+.+
T Consensus       153 ~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~  207 (243)
T cd03272         153 QQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKE  207 (243)
T ss_pred             cccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            4677899999999999999996    35899999999999999999999988754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]

Probab=99.83  E-value=2.2e-20  Score=167.11  Aligned_cols=161  Identities=16%  Similarity=0.129  Sum_probs=113.6

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .+.+.+|++.|+... +  .|+++||+++.|+.++++|++|+||||++++|..++.   +.+|. .++|+..        
T Consensus       262 ~v~F~~V~F~y~~~r-~--iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD---~~sG~I~id~qdir~vtq~sl  335 (497)
T COG5265         262 AVAFINVSFAYDPRR-P--ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYD---VNSGSITIDGQDIRDVTQQSL  335 (497)
T ss_pred             eEEEEEEEeeccccc-h--hhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhC---CcCceEEEcchhHHHhHHHHH
Confidence            478899999998742 3  5599999999999999999999999999999999997   88887 5666432        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCCCCC----CCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSVYAP----SFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~~~~----~lS~G~~  214 (254)
                      +..+|. +++|--.+.   -+...|     ..+|-+..- .+......+...+         +.+..+.    .+|||+|
T Consensus       336 R~aIg~-VPQDtvLFN---Dti~yn-----i~ygr~~at-~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggek  405 (497)
T COG5265         336 RRAIGI-VPQDTVLFN---DTIAYN-----IKYGRPDAT-AEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK  405 (497)
T ss_pred             HHHhCc-Ccccceehh---hhHHHH-----HhccCcccc-HHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchH
Confidence            122332 455432211   122222     223323222 2333333333322         2233332    6899999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||++||+++.+|+|+++||.|+.||....+++...+++
T Consensus       406 qrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~  444 (497)
T COG5265         406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALRE  444 (497)
T ss_pred             HHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999999998887764

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.83  E-value=1.5e-20  Score=171.47  Aligned_cols=160  Identities=12%  Similarity=-0.003  Sum_probs=105.0

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (254)
                      .-|.+.+++..||++.    .|.+.++++..|..+||+|+||+|||||||+|+.-.-..+|..-+         -.|..+
T Consensus        79 ~Di~~~~fdLa~G~k~----LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~~~v~~f~veqE---------~~g~~t  145 (582)
T KOG0062|consen   79 KDIHIDNFDLAYGGKI----LLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIANGQVSGFHVEQE---------VRGDDT  145 (582)
T ss_pred             cceeeeeeeeeecchh----hhcCCceeeecccccceeCCCCCcHHHHHHHHHhcCcCccCchhh---------eeccch
Confidence            3477889999999844    569999999999999999999999999999998722100111100         001111


Q ss_pred             eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHH-HHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN-CLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (254)
Q Consensus       156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~-~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlI  231 (254)
                      ...- ....   +-.+...+..+...+........+.. +|.-+++.   ...+...||||.|.|+++||||..+||||+
T Consensus       146 ~~~~-~~l~---~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf~~pDlLL  221 (582)
T KOG0062|consen  146 EALQ-SVLE---SDTERLDFLAEEKELLAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALFAKPDLLL  221 (582)
T ss_pred             HHHh-hhhh---ccHHHHHHHHhhhhhhccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHhcCCCEEe
Confidence            1000 0000   00111122222211111112333333 77777776   356788999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHhh
Q 025366          232 VDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       232 lDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |||||+.||..+..-+-+.|.
T Consensus       222 LDEPTNhLDv~av~WLe~yL~  242 (582)
T KOG0062|consen  222 LDEPTNHLDVVAVAWLENYLQ  242 (582)
T ss_pred             ecCCcccchhHHHHHHHHHHh
Confidence            999999999988777766653

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.83  E-value=2.1e-20  Score=189.01  Aligned_cols=162  Identities=14%  Similarity=0.123  Sum_probs=126.2

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC--------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------  146 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~--------  146 (254)
                      -.|+++|++.+|......  +|+|+||+|++||.|||+|..|||||||+..|.++..   |.+|+ .+||-.        
T Consensus      1137 G~I~f~~~~~RYrp~lp~--VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e---~~~G~I~IDgvdI~~igL~d 1211 (1381)
T KOG0054|consen 1137 GEIEFEDLSLRYRPNLPL--VLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVE---PAEGEILIDGVDISKIGLHD 1211 (1381)
T ss_pred             CeEEEEEeEEEeCCCCcc--hhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcC---ccCCeEEEcCeecccccHHH
Confidence            369999999999875333  5699999999999999999999999999999999997   89999 678732        


Q ss_pred             CCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCCCC----CCCChhh
Q 025366          147 KPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSVYA----PSFDHGV  213 (254)
Q Consensus       147 ~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~~~----~~lS~G~  213 (254)
                      .+...+ +|+||...+..   |+..|+       .-..++.++.+.+++++..+.         .+..+    ..||-||
T Consensus      1212 LRsrls-IIPQdPvLFsG---TvR~NL-------DPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQ 1280 (1381)
T KOG0054|consen 1212 LRSRLS-IIPQDPVLFSG---TVRFNL-------DPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQ 1280 (1381)
T ss_pred             HHhcCe-eeCCCCceecC---cccccc-------CcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHH
Confidence            133344 47888765442   333332       223445667777777776653         22222    3799999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||-+++||||+++.+||||||.|+..|+..-..|.+.|.+
T Consensus      1281 RQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~ 1320 (1381)
T KOG0054|consen 1281 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIRE 1320 (1381)
T ss_pred             HHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHH
Confidence            9999999999999999999999999999988888777754

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=99.83  E-value=6.1e-20  Score=163.20  Aligned_cols=163  Identities=17%  Similarity=0.213  Sum_probs=114.3

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (254)
                      -.-++++|+.+.|.+..   +-+..||++|++||+|.|+|.||||||||+++|.|+.+   |++|+ .++|+.+.++.  
T Consensus       320 ~~~lelrnvrfay~~~~---FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~---PqsG~I~ldg~pV~~e~--  391 (546)
T COG4615         320 WKTLELRNVRFAYQDNA---FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQ---PQSGEILLDGKPVSAEQ--  391 (546)
T ss_pred             ccceeeeeeeeccCccc---ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccC---CCCCceeECCccCCCCC--
Confidence            34699999999998742   24689999999999999999999999999999999997   88887 45554332210  


Q ss_pred             EeeCCCCC-CCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------CCCCCCCCChhhhhhHhhhhhhcC
Q 025366          154 VLPMDGFH-LYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGL  225 (254)
Q Consensus       154 ~i~~~~~~-~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------~~~~~~~lS~G~~qrv~ia~al~~  225 (254)
                         .++|. ++.   .+..+.-......|-........+...++.+.+.       .+...-.||.|||+|+++..|++.
T Consensus       392 ---ledYR~LfS---avFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllE  465 (546)
T COG4615         392 ---LEDYRKLFS---AVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLE  465 (546)
T ss_pred             ---HHHHHHHHH---HHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHh
Confidence               00000 000   0000111111122222224456667777777664       334455799999999999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          226 QHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       226 ~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      +.+|+++||.-+-.||..++.+.+.+
T Consensus       466 eR~Ilv~DEWAADQDPaFRR~FY~~l  491 (546)
T COG4615         466 ERDILVLDEWAADQDPAFRREFYQVL  491 (546)
T ss_pred             hCCeEEeehhhccCChHHHHHHHHHH
Confidence            99999999999999999988876543

>KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only]

Probab=99.82  E-value=1.7e-20  Score=172.09  Aligned_cols=159  Identities=14%  Similarity=0.044  Sum_probs=103.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~  154 (254)
                      ..-+.++++++.|.+..    .++|+.|++.+|+.+||+|+|||||||+|++|+|...   |.          ++....+
T Consensus        73 s~dvk~~sls~s~~g~~----l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~---P~----------p~~~d~y  135 (614)
T KOG0927|consen   73 SRDVKIESLSLSFHGVE----LIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREV---PI----------PEHIDFY  135 (614)
T ss_pred             cccceeeeeeeccCCce----eeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCC---CC----------Ccccchh
Confidence            34689999999998743    6699999999999999999999999999999999885   32          1122211


Q ss_pred             eeCCCCCCCCcCCCh-----------hhcHHHHHHHcCCC-CCccHHHHHH-------------------HHHhhccC--
Q 025366          155 LPMDGFHLYLSQLDA-----------MEDPKEAHARRGAP-WTFNPLLLLN-------------------CLKNLRNQ--  201 (254)
Q Consensus       155 i~~~~~~~~~~~l~~-----------~e~~~~~~~~~g~~-~~~~~~~~~~-------------------~l~~l~l~--  201 (254)
                       .......+.. .+.           ...+++....+... ++.+.+....                   ++..+++.  
T Consensus       136 -~ls~e~~ps~-~~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~  213 (614)
T KOG0927|consen  136 -LLSREIEPSE-KQAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSE  213 (614)
T ss_pred             -hhcccCCCch-HHHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHh
Confidence             1111000000 000           01111111111110 1111222221                   22222222  


Q ss_pred             -CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          202 -GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       202 -~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                       ...++..||||++.|+++|++|..+|++|+|||||++||..+..-+.+.+.
T Consensus       214 m~~k~~~~~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~  265 (614)
T KOG0927|consen  214 MQDKKVKDLSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLA  265 (614)
T ss_pred             HHHHHhhccCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHH
Confidence             356788999999999999999999999999999999999998887777664

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.82  E-value=2.8e-21  Score=163.09  Aligned_cols=156  Identities=12%  Similarity=0.099  Sum_probs=91.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (254)
                      -|+++|.. .|++..    +++++++     +++||+||||||||||+++|.-...   .+.... .    ....+.++ 
T Consensus         5 ~l~l~nfk-~~~~~~----~l~~~~~-----~i~~ivGpNGaGKSTll~~i~~~~G---~~~~~~-~----~~~i~~~~-   65 (212)
T cd03274           5 KLVLENFK-SYAGEQ----VIGPFHK-----SFSAIVGPNGSGKSNVIDSMLFVFG---FRASKM-R----QKKLSDLI-   65 (212)
T ss_pred             EEEEECcc-cCCCCe----eeccCCC-----CeEEEECCCCCCHHHHHHHHHHHhc---cCHHHh-h----hhhHHHHh-
Confidence            46777876 777643    5588877     8999999999999999999985432   000000 0    00111111 


Q ss_pred             CCCCCCCCcCCChhhcHHH--------HHHHcCCCCCccHH--HHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          157 MDGFHLYLSQLDAMEDPKE--------AHARRGAPWTFNPL--LLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       157 ~~~~~~~~~~l~~~e~~~~--------~~~~~g~~~~~~~~--~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                      ..+...+  .++..+...+        .....++.......  ...++++.+++.  .+..+..||+||+||+++|++++
T Consensus        66 ~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~lS~G~~~r~~la~al~  143 (212)
T cd03274          66 HNSAGHP--NLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISNLSGGEKTLSSLALVFA  143 (212)
T ss_pred             cCCCCCC--CCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhhcCHHHHHHHHHHHHHH
Confidence            1110000  0111111100        01112221110000  012222333333  45567899999999999999996


Q ss_pred             C----CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 L----QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~----~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .    +|+++|+|||+++||+..+..+.+++.+
T Consensus       144 ~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~  176 (212)
T cd03274         144 LHHYKPTPLYVMDEIDAALDFRNVSIVANYIKE  176 (212)
T ss_pred             hcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHH
Confidence            3    5799999999999999999999998864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=99.81  E-value=2.6e-19  Score=155.19  Aligned_cols=65  Identities=12%  Similarity=0.002  Sum_probs=56.2

Q ss_pred             HHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCC---CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          189 LLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       189 ~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~---p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ....++++.+++.   ....+..||+||+||+++|++|+.+   |+++|+||||++||+..+..+.++|.+
T Consensus       147 ~~~~~~L~~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~  217 (261)
T cd03271         147 ARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQR  217 (261)
T ss_pred             HHHHHHHHHcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            4456677778775   3677889999999999999999886   799999999999999999999998864

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.81  E-value=8.2e-20  Score=157.87  Aligned_cols=144  Identities=9%  Similarity=0.055  Sum_probs=92.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc-e-ecCCC--------C--CCCCeEEEeeCCCCC-------CCCcCC
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-SFDSQ--------V--KPPDVATVLPMDGFH-------LYLSQL  167 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G-~-~~~~~--------~--~~~~~g~~i~~~~~~-------~~~~~l  167 (254)
                      ..+++|+||||||||||+++|++++.   +..| + ...+.        .  .......++.++...       -..+.+
T Consensus        25 ~~~~~IvG~NGsGKStll~Ai~~ll~---~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l  101 (251)
T cd03273          25 PQFNAITGLNGSGKSNILDAICFVLG---ITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI  101 (251)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhc---ccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE
Confidence            56999999999999999999999985   5533 3 22221        0  011112223333210       011123


Q ss_pred             ChhhcHHHHHHHcC-C-CCCccHHHHHHHHHhhccCC----------------------CCCCCCCChhhhhhHhhhhhh
Q 025366          168 DAMEDPKEAHARRG-A-PWTFNPLLLLNCLKNLRNQG----------------------SVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       168 ~~~e~~~~~~~~~g-~-~~~~~~~~~~~~l~~l~l~~----------------------~~~~~~lS~G~~qrv~ia~al  223 (254)
                      ++.+++........ + ........+.+.++.+++..                      +.++..||+||+||+++|+++
T Consensus       102 tV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al  181 (251)
T cd03273         102 TVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL  181 (251)
T ss_pred             EEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence            44433322111111 1 11223466777888877652                      256789999999999999999


Q ss_pred             c----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 G----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +    .+|+++|+|||+++||+..++.+.+++.+
T Consensus       182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~  215 (251)
T cd03273         182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKT  215 (251)
T ss_pred             HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            7    57899999999999999999999998864

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.81  E-value=1.1e-19  Score=163.31  Aligned_cols=162  Identities=17%  Similarity=0.168  Sum_probs=121.3

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~  154 (254)
                      -|++-+.+|++.|.+. +.  .+.+++|-|.--..|+|+||||.||||||++|.|-+.   |..|+...++  +-.+|. 
T Consensus       584 PPvLGlH~VtFgy~gq-kp--LFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~---P~~GE~RKnh--rL~iG~-  654 (807)
T KOG0066|consen  584 PPVLGLHDVTFGYPGQ-KP--LFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLD---PNDGELRKNH--RLRIGW-  654 (807)
T ss_pred             CCeeecccccccCCCC-Cc--hhhcccccccccceeEEECCCCccHHHHHHHHhcCCC---CCcchhhccc--eeeeec-
Confidence            4789999999999663 23  4599999999999999999999999999999999997   9999843322  222332 


Q ss_pred             eeCCCCCCCCcCCChhhcH-HHHHHHcCCCCCccHHHHHHHHHhhccCC---CCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366          155 LPMDGFHLYLSQLDAMEDP-KEAHARRGAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~-~~~~~~~g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~ia~al~~~p~vl  230 (254)
                         .+++.. ..++..+.+ ++..+.+.++    .......|..+++..   -+.+..|||||+.||++|-.-+..||||
T Consensus       655 ---FdQh~~-E~L~~Eetp~EyLqr~FNlp----yq~ARK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvl  726 (807)
T KOG0066|consen  655 ---FDQHAN-EALNGEETPVEYLQRKFNLP----YQEARKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVL  726 (807)
T ss_pred             ---hhhhhH-HhhccccCHHHHHHHhcCCC----hHHHHHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEE
Confidence               222211 113444433 3333344333    456677888888763   3578899999999999998888999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHhhc
Q 025366          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       231 IlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||||..||..+...+.+.|.+
T Consensus       727 ILDEPTNNLDIESIDALaEAIne  749 (807)
T KOG0066|consen  727 ILDEPTNNLDIESIDALAEAINE  749 (807)
T ss_pred             EecCCCCCcchhhHHHHHHHHHh
Confidence            99999999999999888887754

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.81  E-value=1.4e-19  Score=163.23  Aligned_cols=156  Identities=14%  Similarity=0.138  Sum_probs=107.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (254)
                      .+++..+++|.|+++.     |.=-.=++..||++|++||||-|||||.++|+|.++   |++|+  ..+       .-+
T Consensus       341 ~lv~y~~~~k~~g~F~-----L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ik---Pdeg~--~~~-------~~v  403 (591)
T COG1245         341 TLVEYPDLKKTYGDFK-----LEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIK---PDEGS--EED-------LKV  403 (591)
T ss_pred             eeeecchheeecCceE-----EEecCCeeecceEEEEECCCCcchHHHHHHHhcccc---CCCCC--Ccc-------ceE
Confidence            4678889999998753     222334577899999999999999999999999998   99985  110       113


Q ss_pred             eCCCCCCCC-cCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEE
Q 025366          156 PMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (254)
Q Consensus       156 ~~~~~~~~~-~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIl  232 (254)
                      ++..+++.. .+.++.+.+...... .+..   ..-..++++-|.+.  .+..+..||||+.|||+||.+|..++|+.+|
T Consensus       404 SyKPQyI~~~~~gtV~~~l~~~~~~-~~~~---s~~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYll  479 (591)
T COG1245         404 SYKPQYISPDYDGTVEDLLRSAIRS-AFGS---SYFKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLL  479 (591)
T ss_pred             eecceeecCCCCCcHHHHHHHhhhh-hccc---chhHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEe
Confidence            333333321 113444333221111 0111   11223455555554  5778899999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHhh
Q 025366          233 DGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       233 DEp~~~lD~~~~~~l~~ll~  252 (254)
                      |||.+.||.+.+-.+...|.
T Consensus       480 DEPSA~LDvEqR~~vakvIR  499 (591)
T COG1245         480 DEPSAYLDVEQRIIVAKVIR  499 (591)
T ss_pred             cCchhhccHHHHHHHHHHHH
Confidence            99999999998877766654

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.79  E-value=5.3e-19  Score=178.98  Aligned_cols=155  Identities=15%  Similarity=0.158  Sum_probs=121.6

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (254)
                      .+.++++|.++..+.. .....|+|+||+|++|+.+||+|+-|||||+|+..|.|.++   ..+|+ .+.|.     .++
T Consensus       516 ~~~i~i~~~sfsW~~~-~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~---~~sG~v~v~gs-----iaY  586 (1381)
T KOG0054|consen  516 ENAIEIKNGSFSWDSE-SPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMP---KLSGSVAVNGS-----VAY  586 (1381)
T ss_pred             CceEEEeeeeEecCCC-CCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcc---cccceEEEcCe-----EEE
Confidence            3468999999998762 23336799999999999999999999999999999999997   78887 44443     333


Q ss_pred             EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCC-------------CCCCCChhhhhhHhhh
Q 025366          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSV-------------YAPSFDHGVGDPVEDD  220 (254)
Q Consensus       154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~-------------~~~~lS~G~~qrv~ia  220 (254)
                       ++|...-..   -|+.||+-|     |  ..++.++..++++...+..+.             +--.||||||||+++|
T Consensus       587 -v~Q~pWI~n---gTvreNILF-----G--~~~d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLA  655 (1381)
T KOG0054|consen  587 -VPQQPWIQN---GTVRENILF-----G--SPYDEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLA  655 (1381)
T ss_pred             -eccccHhhC---CcHHHhhhc-----C--ccccHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHH
Confidence             555544332   366776643     3  446788888888887765321             2347999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~  249 (254)
                      ||+..++||++||-|++.+|...-+++.+
T Consensus       656 RAVY~~adIYLLDDplSAVDahvg~~if~  684 (1381)
T KOG0054|consen  656 RAVYQDADIYLLDDPLSAVDAHVGKHIFE  684 (1381)
T ss_pred             HHHhccCCEEEEcCcchhhhHhhhHHHHH
Confidence            99999999999999999999988777665

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=99.79  E-value=2.6e-19  Score=151.12  Aligned_cols=151  Identities=14%  Similarity=0.116  Sum_probs=91.7

Q ss_pred             eEEEecceeecccccceeccccceeeeeC-CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecC-------CCCC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-------SQVK  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~-~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~-------~~~~  147 (254)
                      .|+++|+. .|.+.       .+++|... +|++++|+||||||||||+++|++.+-.  +..+. ...       ....
T Consensus         5 ~i~l~nf~-~y~~~-------~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g--~~~~~~~~~~~~~~~~~~~~   74 (213)
T cd03279           5 KLELKNFG-PFREE-------QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYG--KTPRYGRQENLRSVFAPGED   74 (213)
T ss_pred             EEEEECCc-CcCCc-------eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEec--CccccccchhHHHHhcCCCc
Confidence            47888988 65441       45666654 5899999999999999999999965421  22222 110       0000


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHH--HHHhhcc--CCCCCCCCCChhhhhhHhhhhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLN--CLKNLRN--QGSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~--~l~~l~l--~~~~~~~~lS~G~~qrv~ia~al  223 (254)
                      ...++. +.++....+    .+...       .++    +...+.+  .++...+  ..+..+..||+||+||+++|+++
T Consensus        75 ~~~v~~-~f~~~~~~~----~~~r~-------~gl----~~~~~~~~~~l~~g~l~~~l~~~~~~lS~G~~~r~~la~al  138 (213)
T cd03279          75 TAEVSF-TFQLGGKKY----RVERS-------RGL----DYDQFTRIVLLPQGEFDRFLARPVSTLSGGETFLASLSLAL  138 (213)
T ss_pred             cEEEEE-EEEECCeEE----EEEEe-------cCC----CHHHHHHhhhhhhcchHHHhcCCccccCHHHHHHHHHHHHH
Confidence            111222 222211110    11110       111    1111111  1111111  13567789999999999999999


Q ss_pred             cC----------CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~----------~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.          +|+++|+|||+++||+..++.+.+++.+
T Consensus       139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~  178 (213)
T cd03279         139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALEL  178 (213)
T ss_pred             HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            74          5789999999999999999999888753

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.77  E-value=1.4e-18  Score=172.96  Aligned_cols=172  Identities=12%  Similarity=-0.013  Sum_probs=125.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CCC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD  150 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~~  150 (254)
                      +.-..|+.+.-.....+...|+||+=-+.+|.+.||+|+|||||||||++|+|... ..--+|+ .++|...     +..
T Consensus       787 V~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t-~G~I~Gdi~i~G~p~~q~tF~R~  865 (1391)
T KOG0065|consen  787 VFYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKT-GGYIEGDILISGFPKDQETFARV  865 (1391)
T ss_pred             eEEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcc-cceEEeEEEECCeeCchhhhccc
Confidence            34455555444111122335699999999999999999999999999999999852 1123455 4666432     344


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC---CCCccHHHHHHHHHhhccC--CCCCCCC----CChhhhhhHhhhh
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGA---PWTFNPLLLLNCLKNLRNQ--GSVYAPS----FDHGVGDPVEDDI  221 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~----lS~G~~qrv~ia~  221 (254)
                      .|+ +.+++.+...  +|+.|-+.+....+--   +.....+.++++++.|++.  .+.-+..    ||.+||+|+.||.
T Consensus       866 ~GY-vqQ~DiH~~~--~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgV  942 (1391)
T KOG0065|consen  866 SGY-VEQQDIHSPE--LTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGV  942 (1391)
T ss_pred             cce-eecccccCcc--cchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEE
Confidence            676 7888877754  8999988876654422   2222224567888888887  4444444    9999999999999


Q ss_pred             hhcCCC-cEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          222 LVGLQH-KVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       222 al~~~p-~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      .|+.+| .||.|||||+|||..+..-+.++++
T Consensus       943 ELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lr  974 (1391)
T KOG0065|consen  943 ELVANPSSILFLDEPTSGLDSQAAAIVMRFLR  974 (1391)
T ss_pred             EEecCCceeEEecCCCCCccHHHHHHHHHHHH
Confidence            999999 8999999999999999888888765

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=99.77  E-value=9.9e-19  Score=146.72  Aligned_cols=131  Identities=13%  Similarity=0.050  Sum_probs=82.1

Q ss_pred             eeeeCCCeEEEEECCCCCcHHHHHHHHH----HhhcccCCCCce-e-----cCCCCCCCCeEEEeeCCC--CCCC-CcCC
Q 025366          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVV----RRINKIWPQKAS-S-----FDSQVKPPDVATVLPMDG--FHLY-LSQL  167 (254)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLlk~L~----Gll~~~~p~~G~-~-----~~~~~~~~~~g~~i~~~~--~~~~-~~~l  167 (254)
                      ++++.+| +++|+||||||||||+++|.    |...   |+.|. .     +.........+. +..+.  ..+. ...+
T Consensus        17 ~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~---~~~~~~~~~~~~i~~~~~~~~v~~-~f~~~~~~~~~v~r~~   91 (204)
T cd03240          17 EIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELP---PNSKGGAHDPKLIREGEVRAQVKL-AFENANGKKYTITRSL   91 (204)
T ss_pred             EEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCC---cccccccchHHHHhCCCCcEEEEE-EEEeCCCCEEEEEEEh
Confidence            3456566 99999999999999999996    5553   55553 1     111111122232 22221  1100 0011


Q ss_pred             ChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhh------HhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP------VEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qr------v~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                      ++.+++.+      .+    .....+.+       +..+..||+||+||      ++++++++.+|+++|+|||+++||+
T Consensus        92 ~~~~~~~~------~~----~~~~~~~~-------~~~~~~LS~G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~  154 (204)
T cd03240          92 AILENVIF------CH----QGESNWPL-------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDE  154 (204)
T ss_pred             hHhhceee------ec----hHHHHHHH-------hcCccccCccHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCH
Confidence            22222211      01    11122222       55678999999996      6889999999999999999999999


Q ss_pred             HHHH-HHHHHhhc
Q 025366          242 GVWK-DVSSMFDE  253 (254)
Q Consensus       242 ~~~~-~l~~ll~~  253 (254)
                      ..++ .+.+++.+
T Consensus       155 ~~~~~~l~~~l~~  167 (204)
T cd03240         155 ENIEESLAEIIEE  167 (204)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999 89888854

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]

Probab=99.77  E-value=4.1e-18  Score=157.57  Aligned_cols=166  Identities=15%  Similarity=0.064  Sum_probs=119.3

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCce-e--cCCCCCCCCe
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-S--FDSQVKPPDV  151 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-~~G~-~--~~~~~~~~~~  151 (254)
                      +++++++|+..-++. ..+ +++++||+|++|+-+.|.||||||||.|+|+|+|+-    | .+|+ .  .++.  + .-
T Consensus       432 n~i~~e~v~l~tPt~-g~~-lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLW----p~~~G~l~k~~~~~--~-~~  502 (659)
T KOG0060|consen  432 NAIEFEEVSLSTPTN-GDL-LIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLW----PSTGGKLTKPTDGG--P-KD  502 (659)
T ss_pred             ceEEeeeeeecCCCC-Cce-eeeeeeeEecCCCeEEEECCCCCchhHHHHHHhccc----ccCCCeEEecccCC--C-Cc
Confidence            689999999998874 233 458999999999999999999999999999999985    6 6776 2  2221  1 11


Q ss_pred             EEEeeCCCCCCCCcCCChhhcHHHHHHHc-CCCCCccHHHHHHHHHhhccC--------C-----CCCCCCCChhhhhhH
Q 025366          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARR-GAPWTFNPLLLLNCLKNLRNQ--------G-----SVYAPSFDHGVGDPV  217 (254)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~-g~~~~~~~~~~~~~l~~l~l~--------~-----~~~~~~lS~G~~qrv  217 (254)
                      ..++++..|....   |..+.+-+..... ......+.+.+...|++++++        .     .-+...||+||+||+
T Consensus       503 lfflPQrPYmt~G---TLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRL  579 (659)
T KOG0060|consen  503 LFFLPQRPYMTLG---TLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRL  579 (659)
T ss_pred             eEEecCCCCcccc---chhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHH
Confidence            2335555543221   2223222221111 112334567778888888764        1     124568999999999


Q ss_pred             hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++||.+.++|++-||||-|+++|++.-..+.+.+.+
T Consensus       580 a~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~  615 (659)
T KOG0060|consen  580 AFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE  615 (659)
T ss_pred             HHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH
Confidence            999999999999999999999999988888777654

>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.76  E-value=8.8e-18  Score=140.35  Aligned_cols=133  Identities=11%  Similarity=0.118  Sum_probs=85.7

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-----ce----ecCCCCCCCCeEEEeeCCCCCCCCcCCC
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-----AS----SFDSQVKPPDVATVLPMDGFHLYLSQLD  168 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~-----G~----~~~~~~~~~~~g~~i~~~~~~~~~~~l~  168 (254)
                      +++++++.+| +.+|+||||||||||+..|...+.   ...     |.    .+..........  +.++....+     
T Consensus        13 ~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~---~~~~~~~r~~~~~~~i~~~~~~~~i~--~~~~~~~~~-----   81 (198)
T cd03276          13 RHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLG---GKASDTNRGSSLKDLIKDGESSAKIT--VTLKNQGLD-----   81 (198)
T ss_pred             eeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhc---CCcccccccccHHHHhhCCCCeEEEE--EEEEcCCcc-----
Confidence            5677777776 889999999999999999986553   221     21    010000011111  111111111     


Q ss_pred             hhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhh----cCCCcEEEEeCCCCCCCHHHH
Q 025366          169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVW  244 (254)
Q Consensus       169 ~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al----~~~p~vlIlDEp~~~lD~~~~  244 (254)
                        ++         .........+.++++. .-..+.++..||+||+||+++|+++    +.+|+++|+|||+++||...+
T Consensus        82 --~~---------~~~~~~~~~~~~~l~~-~~~~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~  149 (198)
T cd03276          82 --AN---------PLCVLSQDMARSFLTS-NKAAVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNR  149 (198)
T ss_pred             --CC---------cCCHHHHHHHHHHhcc-ccccCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHH
Confidence              00         0011112344455554 3335677889999999999999999    589999999999999999999


Q ss_pred             HHHHHHhhc
Q 025366          245 KDVSSMFDE  253 (254)
Q Consensus       245 ~~l~~ll~~  253 (254)
                      ..+.++|.+
T Consensus       150 ~~~~~~l~~  158 (198)
T cd03276         150 KISTDLLVK  158 (198)
T ss_pred             HHHHHHHHH
Confidence            999887754

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=99.76  E-value=2.4e-18  Score=141.92  Aligned_cols=172  Identities=16%  Similarity=0.267  Sum_probs=120.2

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce--ecCC-CCC--C-
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS--SFDS-QVK--P-  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~--~~~~-~~~--~-  148 (254)
                      |+++.++|++..+......+.+++++|+++++|||-||+|.+|||||-.+|.|+|..+.-|--...  .|+. +..  . 
T Consensus         1 M~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~P   80 (330)
T COG4170           1 MPLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSP   80 (330)
T ss_pred             CCcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCCh
Confidence            678999999999987777788999999999999999999999999999999999998633332222  1221 000  0 


Q ss_pred             ----CCeEE---EeeCCCCCCCCcCCChhhcHHHH-HHHc-CCC-C----------CccHHHHHHHHHhhccCC-----C
Q 025366          149 ----PDVAT---VLPMDGFHLYLSQLDAMEDPKEA-HARR-GAP-W----------TFNPLLLLNCLKNLRNQG-----S  203 (254)
Q Consensus       149 ----~~~g~---~i~~~~~~~~~~~l~~~e~~~~~-~~~~-g~~-~----------~~~~~~~~~~l~~l~l~~-----~  203 (254)
                          .-+|.   +|.++..       +-.+..+.. +..+ .+| +          .+...+..+++..+++..     .
T Consensus        81 r~RRk~ig~~isMIFQeP~-------sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~  153 (330)
T COG4170          81 RERRKLVGHNVSMIFQEPQ-------SCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR  153 (330)
T ss_pred             HHhhhhhccchhhhhcCch-------hhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH
Confidence                01111   2222221       111111111 1111 011 1          123345667788887763     3


Q ss_pred             CCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       204 ~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      -|+.++--|+.|+|.||.|++.+|++||.||||+.+|+..+.++..++..
T Consensus       154 SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~  203 (330)
T COG4170         154 SYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSR  203 (330)
T ss_pred             hCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHH
Confidence            57789999999999999999999999999999999999999999988753

>KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription]

Probab=99.75  E-value=6.3e-18  Score=138.91  Aligned_cols=170  Identities=15%  Similarity=0.041  Sum_probs=119.0

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CC
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PP  149 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~  149 (254)
                      -.|+++++.+.|.... +  .+-|+|++++.|....|+|.||||||||+|+|+|-.-   .-.|. .+.|...     ..
T Consensus        12 ~aievsgl~f~y~~~d-P--~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhm---v~~~~v~VlgrsaFhDt~l~   85 (291)
T KOG2355|consen   12 FAIEVSGLQFKYKVSD-P--IFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHM---VGGGVVQVLGRSAFHDTSLE   85 (291)
T ss_pred             ceEEEeccEEecccCC-c--eEEEEeeccCCCceEEEEecCCCchhhhHHHhcCccc---ccCCeEEEcCcCcccccccc
Confidence            3699999999998643 3  4489999999999999999999999999999999763   11232 2222110     01


Q ss_pred             CeEEEeeCCCCCCC-----CcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhc
Q 025366          150 DVATVLPMDGFHLY-----LSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       150 ~~g~~i~~~~~~~~-----~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                      .+|......+ .+.     ..+.+...++......+++.. .+.++-..+++.|.+....+.+..|-|||+||.|+..|+
T Consensus        86 ~Sgdl~YLGg-eW~~~~~~agevplq~D~sae~mifgV~g-~dp~Rre~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL  163 (291)
T KOG2355|consen   86 SSGDLSYLGG-EWSKTVGIAGEVPLQGDISAEHMIFGVGG-DDPERREKLIDILDIDLRWRMHKVSDGQRRRVQICMGLL  163 (291)
T ss_pred             ccCceeEecc-cccccccccccccccccccHHHHHhhccC-CChhHhhhhhhheeccceEEEeeccccchhhhHHHHhcc
Confidence            1122111111 110     001122222233333455422 234666778888888888888999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ..-+||+|||.|.-||..++..+.+++++
T Consensus       164 ~PfkVLLLDEVTVDLDVlARadLLeFlke  192 (291)
T KOG2355|consen  164 KPFKVLLLDEVTVDLDVLARADLLEFLKE  192 (291)
T ss_pred             cceeEEEeeeeEeehHHHHHHHHHHHHHH
Confidence            99999999999999999999999999865

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=99.73  E-value=2.2e-18  Score=138.38  Aligned_cols=156  Identities=19%  Similarity=0.155  Sum_probs=102.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCC------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP------  149 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~------  149 (254)
                      ++++++|...-        -|-.+|.++..||++-++||||||||||+-.++|++    |.+|+ .++|.....      
T Consensus         3 l~qln~v~~~t--------RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~----~~sGsi~~~G~~l~~~~~~eL   70 (248)
T COG4138           3 LMQLNDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGSGSIQFAGQPLEAWSATEL   70 (248)
T ss_pred             eeeeccccccc--------cccccccccccceEEEEECCCCccHHHHHHHHhCCC----CCCceEEECCcchhHHhHhHH
Confidence            56677776442        236788999999999999999999999999999999    88887 456543211      


Q ss_pred             --CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc-
Q 025366          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG-  224 (254)
Q Consensus       150 --~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~-  224 (254)
                        ...+ +.+.....+  .++++....     ...|.......+..+...+.+.  ..+.+.+||||+=|||-+|..+. 
T Consensus        71 ArhRAY-LsQqq~p~f--~mpV~~YL~-----L~qP~~~~a~~i~~i~~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQ  142 (248)
T COG4138          71 ARHRAY-LSQQQTPPF--AMPVWHYLT-----LHQPDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ  142 (248)
T ss_pred             HHHHHH-HhhccCCcc--hhhhhhhhh-----hcCchHHHHHHHHHHHhhhcccchhhhhhhhcCcccceeeEEeEEEEE
Confidence              1111 222211111  122222211     1113323334456666666665  34567899999999999886542 


Q ss_pred             ------CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          225 ------LQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       225 ------~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                            ...+++|+|||+++||...+-.+-.++.
T Consensus       143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~  176 (248)
T COG4138         143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLS  176 (248)
T ss_pred             ecCCCCccceeEEecCCCcchhHHHHHHHHHHHH
Confidence                  3347899999999999987776666654

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=99.73  E-value=2.5e-17  Score=152.39  Aligned_cols=167  Identities=20%  Similarity=0.190  Sum_probs=120.2

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP----  149 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~----  149 (254)
                      .+.+++++++..-        .++|+||++++|||+||.|--|||+|-|++.|.|..+   +..|+ .++|+....    
T Consensus       261 ~~~l~v~~l~~~~--------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~---~~~G~i~l~G~~v~~~sp~  329 (500)
T COG1129         261 EPVLEVRNLSGGG--------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARP---ASSGEILLDGKPVRIRSPR  329 (500)
T ss_pred             CcEEEEecCCCCC--------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCc---CCCceEEECCEEccCCCHH
Confidence            4678888886442        2489999999999999999999999999999999886   78999 677754321    


Q ss_pred             -----CeEEEeeCCCCCC-CCcCCChhhcHHHH-HHHcC---C-CCCccHHHHHHHHHhhccC---CCCCCCCCChhhhh
Q 025366          150 -----DVATVLPMDGFHL-YLSQLDAMEDPKEA-HARRG---A-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGD  215 (254)
Q Consensus       150 -----~~g~~i~~~~~~~-~~~~l~~~e~~~~~-~~~~g---~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~q  215 (254)
                           -.++ ++-|-..- -...+++.+|+... ...+.   + .............+.|...   .+..+..||||.+|
T Consensus       330 ~Ai~~Gi~~-v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQ  408 (500)
T COG1129         330 DAIKAGIAY-VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQ  408 (500)
T ss_pred             HHHHcCCEe-CCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhh
Confidence                 1232 33321110 00124667776554 11111   1 1222223345566666654   45778899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||.+|+.|..+|+||||||||-|.|..++.+|.+++.+
T Consensus       409 KVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~  446 (500)
T COG1129         409 KVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRE  446 (500)
T ss_pred             hHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHH
Confidence            99999999999999999999999999999999999864

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.73  E-value=8.9e-18  Score=144.88  Aligned_cols=48  Identities=17%  Similarity=0.142  Sum_probs=43.4

Q ss_pred             CCCCChhhhhhHhhhhhhcC----CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          206 APSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       206 ~~~lS~G~~qrv~ia~al~~----~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +..||+||+||+++|++++.    +|+++|+|||+++||+..+..+.++|.+
T Consensus       153 ~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~  204 (247)
T cd03275         153 MDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIRE  204 (247)
T ss_pred             HHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHH
Confidence            47899999999999999975    4899999999999999999999888764

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=99.71  E-value=1.4e-16  Score=158.59  Aligned_cols=64  Identities=13%  Similarity=0.013  Sum_probs=56.6

Q ss_pred             HHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       190 ~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p---~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ...+.++.++++   ....+..||+||+||+.+|++|+.+|   +++|||||+++||+..+..+.++|++
T Consensus       809 ~~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~  878 (943)
T PRK00349        809 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHR  878 (943)
T ss_pred             HHHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            446778888886   35678899999999999999999999   99999999999999999999998864

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.69  E-value=2.5e-16  Score=163.44  Aligned_cols=61  Identities=11%  Similarity=-0.039  Sum_probs=53.8

Q ss_pred             HHHHhhccC---CCCCCCCCChhhhhhHhhhhhhc---CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVG---LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~---~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++++.+++.   .+..+..||+||+||+++|++|+   .+|+++||||||++||+..++.+.++|++
T Consensus       791 ~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~  857 (1809)
T PRK00635        791 HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQS  857 (1809)
T ss_pred             HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            567777775   35678899999999999999997   69999999999999999999999998864

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=99.68  E-value=5.7e-16  Score=154.02  Aligned_cols=64  Identities=13%  Similarity=0.007  Sum_probs=55.0

Q ss_pred             HHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcC---CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGL---QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       190 ~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~---~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ...++++.++++   ....+..||+||+||+.+|++|+.   +|+++||||||++||+..+..+.++|.+
T Consensus       807 ~~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~  876 (924)
T TIGR00630       807 RKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQR  876 (924)
T ss_pred             HHHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            345677777775   356788999999999999999986   5899999999999999999999998864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]

Probab=99.64  E-value=2.4e-16  Score=131.36  Aligned_cols=145  Identities=48%  Similarity=0.860  Sum_probs=126.6

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~  183 (254)
                      -+.-+.+||+|+.|+||||++..+...    ||..-..++.+..+  +..++++|||++++..+..+++++..++++|.+
T Consensus       116 ~n~~~l~glag~pGtgkst~~a~v~~a----Wp~~~~~f~~e~i~--iaiivPMDGFHlsr~~LD~f~dP~~AharRGap  189 (323)
T KOG2702|consen  116 SNNEELTGLAGRPGTGKSTRIAAVDNA----WPVNVNKFAQESIN--IAIIVPMDGFHLSRRCLDLFKDPQTAHARRGAP  189 (323)
T ss_pred             ccchheeeeecCCCCcchhHHHHHHhh----cchhhhhhhhhhcc--eeEEecccchhhhHHHHHhhcChHHHHhhcCCC
Confidence            445789999999999999999888764    56654444433322  456689999999999999999999999999999


Q ss_pred             CCccHHHHHHHHHhhc--cCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhcC
Q 025366          184 WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK  254 (254)
Q Consensus       184 ~~~~~~~~~~~l~~l~--l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~~  254 (254)
                      +.++...+.++++.+.  -..++++|.|++|.+..+.-...+....+|+|+++.+..||.+.|+.+.+++|+|
T Consensus       190 wTFD~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k  262 (323)
T KOG2702|consen  190 WTFDSNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDK  262 (323)
T ss_pred             cccCHHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhh
Confidence            9999999999999888  5688999999999999999999999999999999999999999999999999875

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=99.63  E-value=3.7e-16  Score=141.35  Aligned_cols=160  Identities=19%  Similarity=0.202  Sum_probs=97.4

Q ss_pred             cceeecccccceeccccceee-eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee-CCC
Q 025366           82 CMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP-MDG  159 (254)
Q Consensus        82 ~l~~~y~~~~~~vlal~~vsl-~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~-~~~  159 (254)
                      ++..+|+...-++   .  .+ ...+|+++||+|+||-||||-+|+|+|.+.   |.-|..-+    +|.+-.++. +.|
T Consensus        79 e~vHRYg~NgFkL---~--~LP~pr~G~V~GilG~NGiGKsTalkILaGel~---PNLG~~~~----pp~wdeVi~~FrG  146 (591)
T COG1245          79 EVVHRYGVNGFKL---Y--RLPTPRPGKVVGILGPNGIGKSTALKILAGELK---PNLGRYED----PPSWDEVIKRFRG  146 (591)
T ss_pred             cceeeccCCceEE---e--cCCCCCCCcEEEEEcCCCccHHHHHHHHhCccc---cCCCCCCC----CCCHHHHHHHhhh
Confidence            4678888743221   1  22 245699999999999999999999999997   87775211    111100000 000


Q ss_pred             CCC-------CCcCCChhhcHHH---HHHH-cC----CCCCc-cHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          160 FHL-------YLSQLDAMEDPKE---AHAR-RG----APWTF-NPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       160 ~~~-------~~~~l~~~e~~~~---~~~~-~g----~~~~~-~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                      -.+       ...++.+...+++   +.+. .|    +.... ..-...++.+.|++.  .++.+.+||||+-||++||.
T Consensus       147 tELq~YF~~l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~de~g~~devve~l~L~nvl~r~v~~LSGGELQr~aIaa  226 (591)
T COG1245         147 TELQNYFKKLYEGELRAVHKPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVERLGLENVLDRDVSELSGGELQRVAIAA  226 (591)
T ss_pred             hHHHHHHHHHHcCCcceecchHHHHHHHHHhcchHHHHHHhhhhcCcHHHHHHHhcchhhhhhhhhhcCchHHHHHHHHH
Confidence            000       0000011000011   0000 00    00000 011345566666665  57889999999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++..++|++++|||++.||...+..+.+++.+
T Consensus       227 ~l~rdADvY~FDEpsSyLDi~qRl~~ar~Ire  258 (591)
T COG1245         227 ALLRDADVYFFDEPSSYLDIRQRLNAARVIRE  258 (591)
T ss_pred             HHhccCCEEEEcCCcccccHHHHHHHHHHHHH
Confidence            99999999999999999999888777766643

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=99.62  E-value=4.2e-16  Score=130.32  Aligned_cols=109  Identities=10%  Similarity=0.035  Sum_probs=72.5

Q ss_pred             cceeeeeCCC-eEEEEECCCCCcHHHHHHHHH-HhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           98 SALASNVNVK-HIVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        98 ~~vsl~i~~G-eivgLiGpNGsGKSTLlk~L~-Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      .++||++.+| ++++|.||||||||||+|+|+ +.+.   +             ..|..++....            .  
T Consensus        18 ~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~---~-------------~~G~~vp~~~~------------~--   67 (200)
T cd03280          18 VPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLM---A-------------QSGLPIPAAEG------------S--   67 (200)
T ss_pred             EcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHH---H-------------HcCCCcccccc------------c--
Confidence            6789999999 489999999999999999998 3321   1             11111111100            0  


Q ss_pred             HHHHcCC-CCCccHHHHHHHHHhhcc--CCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366          176 AHARRGA-PWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (254)
Q Consensus       176 ~~~~~g~-~~~~~~~~~~~~l~~l~l--~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~  249 (254)
                         ..++ .+.+.         .++.  ........||+||+|++.+++++ .+|+++|+|||++++|+..+..+..
T Consensus        68 ---~~~~~~~~~~---------~lg~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~  131 (200)
T cd03280          68 ---SLPVFENIFA---------DIGDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAI  131 (200)
T ss_pred             ---cCcCccEEEE---------ecCchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHH
Confidence               0111 00000         0000  12344578999999999998775 7999999999999999998887753

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism]

Probab=99.61  E-value=9e-16  Score=140.84  Aligned_cols=162  Identities=14%  Similarity=0.042  Sum_probs=108.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-ceecCCCCCCCCeEEEe
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-ASSFDSQVKPPDVATVL  155 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~-G~~~~~~~~~~~~g~~i  155 (254)
                      -|.++|+-..-++  ..+ ++..++|.|++|-.+.|+||||||||.|+|+|.|+-    |.. |.+.-   .+++.-.+|
T Consensus       481 gI~lenIpvItP~--~~v-vv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLW----Pvy~g~L~~---P~~~~mFYI  550 (728)
T KOG0064|consen  481 GIILENIPVITPA--GDV-LVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLW----PVYNGLLSI---PRPNNIFYI  550 (728)
T ss_pred             ceEEecCceeccC--cce-eecceeEEecCCceEEEECCCCccHHHHHHHHhccC----cccCCeeec---CCCcceEec
Confidence            3778888888776  334 468999999999999999999999999999999985    653 33211   133334445


Q ss_pred             eCCCCCCCCc--CCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-----------CCCCCCCCChhhhhhHhhhhh
Q 025366          156 PMDGFHLYLS--QLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       156 ~~~~~~~~~~--~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----------~~~~~~~lS~G~~qrv~ia~a  222 (254)
                      ++..|.--..  +.-.+.+...-..+.|+.    ...+..+++.+.+.           -.-+...||||+|||+++||.
T Consensus       551 PQRPYms~gtlRDQIIYPdS~e~~~~kg~~----d~dL~~iL~~v~L~~i~qr~~g~da~~dWkd~LsgGekQR~~mARm  626 (728)
T KOG0064|consen  551 PQRPYMSGGTLRDQIIYPDSSEQMKRKGYT----DQDLEAILDIVHLEHILQREGGWDAVRDWKDVLSGGEKQRMGMARM  626 (728)
T ss_pred             cCCCccCcCcccceeecCCcHHHHHhcCCC----HHHHHHHHHHhhHHHHHHhccChhhhccHHhhccchHHHHHHHHHH
Confidence            5554422100  000111111122234443    34455555555543           122445799999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +.++|+..+|||-|+....+....+.+..+
T Consensus       627 ~yHrPkyalLDEcTsAvsidvE~~i~~~ak  656 (728)
T KOG0064|consen  627 FYHRPKYALLDECTSAVSIDVEGKIFQAAK  656 (728)
T ss_pred             HhcCcchhhhhhhhcccccchHHHHHHHHH
Confidence            999999999999999988877777776654

>KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis]

Probab=99.60  E-value=3.2e-15  Score=136.91  Aligned_cols=163  Identities=13%  Similarity=0.088  Sum_probs=114.9

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee-cCCCCCCCCeEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVAT  153 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~  153 (254)
                      -|.+++.+|++.|.....  ..+.++++.++.-..++++|+||+||||++|++.+.+.   |.+|.. ..+   +...++
T Consensus       360 ~p~l~i~~V~f~y~p~~y--~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~---~~rgi~~~~~---r~ri~~  431 (582)
T KOG0062|consen  360 PPNLRISYVAFEYTPSEY--QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLT---PTRGIVGRHP---RLRIKY  431 (582)
T ss_pred             CCeeEEEeeeccCCCcch--hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCC---cccceeeecc---cceecc
Confidence            368999999999977432  34599999999999999999999999999999999875   777752 111   111222


Q ss_pred             EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCC---CCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS---VYAPSFDHGVGDPVEDDILVGLQHKVV  230 (254)
Q Consensus       154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~---~~~~~lS~G~~qrv~ia~al~~~p~vl  230 (254)
                       ..+.  +...  +..  +................+.+...+..+++..+   ..+..||||||-||++|.....+|.+|
T Consensus       432 -f~Qh--hvd~--l~~--~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~PhlL  504 (582)
T KOG0062|consen  432 -FAQH--HVDF--LDK--NVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPHLL  504 (582)
T ss_pred             -hhHh--hhhH--HHH--HhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCcEE
Confidence             1111  1110  111  11111111111112256778888999998743   336789999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHhh
Q 025366          231 IVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       231 IlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ||||||+.||.++-..+...|.
T Consensus       505 VLDEPTNhLD~dsl~AL~~Al~  526 (582)
T KOG0062|consen  505 VLDEPTNHLDRDSLGALAKALK  526 (582)
T ss_pred             EecCCCccccHHHHHHHHHHHH
Confidence            9999999999998888777664

>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]

Probab=99.58  E-value=7e-15  Score=131.92  Aligned_cols=141  Identities=16%  Similarity=0.120  Sum_probs=97.1

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE--------eeCCCCCCCCcCC
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV--------LPMDGFHLYLSQL  167 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~--------i~~~~~~~~~~~l  167 (254)
                      +++|+||++++|++++|+|+|||||||++++|+|...    ..|+    +..+|++|.+        ..+.+.+-+  .+
T Consensus       398 vlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~----~~~e----e~y~p~sg~v~vp~nt~~a~iPge~Ep--~f  467 (593)
T COG2401         398 VLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQK----GRGE----EKYRPDSGKVEVPKNTVSALIPGEYEP--EF  467 (593)
T ss_pred             eeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhh----cccc----cccCCCCCceeccccchhhccCccccc--cc
Confidence            6799999999999999999999999999999999874    1111    1112333321        111121100  01


Q ss_pred             ChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC----CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHH
Q 025366          168 DAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV  243 (254)
Q Consensus       168 ~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~  243 (254)
                      .   ........+  ...-|.....+++...++.    ......+||-||+.|+.||.+++..|.+++.||-.+.||+.+
T Consensus       468 ~---~~tilehl~--s~tGD~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~~iDEF~AhLD~~T  542 (593)
T COG2401         468 G---EVTILEHLR--SKTGDLNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELT  542 (593)
T ss_pred             C---chhHHHHHh--hccCchhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcEEhhhhhhhcCHHH
Confidence            1   011111111  1223456677888888876    245667999999999999999999999999999999999988


Q ss_pred             HHHHHHHh
Q 025366          244 WKDVSSMF  251 (254)
Q Consensus       244 ~~~l~~ll  251 (254)
                      ...+..-|
T Consensus       543 A~rVArki  550 (593)
T COG2401         543 AVRVARKI  550 (593)
T ss_pred             HHHHHHHH
Confidence            77666544

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=99.56  E-value=6.9e-15  Score=124.81  Aligned_cols=129  Identities=25%  Similarity=0.366  Sum_probs=95.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccH
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~  188 (254)
                      ++||+|+||||||||++.|++++.   +..+        ... ..++.+|+++.....   .+... .....+.|..++.
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~---~~~~--------~~~-v~vi~~D~f~~~~~~---~~~~~-~~~~~g~p~~~d~   64 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLS---RWPD--------HPN-VELITTDGFLYPNKE---LIERG-LMDRKGFPESYDM   64 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHh---hcCC--------CCc-EEEEecCcccCcHHH---HHHhh-hhhcCCCcccCCH
Confidence            589999999999999999999984   1100        122 335889998754311   11111 1124567888888


Q ss_pred             HHHHHHHHhhcc-CCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH-HHHHHHHHHhhc
Q 025366          189 LLLLNCLKNLRN-QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG-GVWKDVSSMFDE  253 (254)
Q Consensus       189 ~~~~~~l~~l~l-~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~-~~~~~l~~ll~~  253 (254)
                      ..+.+.++.+.. +..+.+|.||+...++..-....+..++|||+||.++..|+ ..|..+.+++|.
T Consensus        65 ~~l~~~L~~l~~g~~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~  131 (220)
T cd02025          65 EALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDF  131 (220)
T ss_pred             HHHHHHHHHHHCCCCcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCe
Confidence            899999999998 46889999999999888765544678899999999999884 456778887765

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=99.56  E-value=3.1e-14  Score=120.23  Aligned_cols=50  Identities=14%  Similarity=-0.054  Sum_probs=43.3

Q ss_pred             CCCCCCCChhhhhhHhhhhhh----cCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          203 SVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       203 ~~~~~~lS~G~~qrv~ia~al----~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ...+..||+||+|++.++.++    +.+|+++|+|||+++||+..+..+.+++.
T Consensus       121 ~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~  174 (213)
T cd03277         121 ELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLV  174 (213)
T ss_pred             ccchhhccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHH
Confidence            456779999999998876543    57999999999999999999999998874

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=99.56  E-value=3.8e-14  Score=129.60  Aligned_cols=171  Identities=16%  Similarity=0.120  Sum_probs=122.1

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC----C-
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK----P-  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~----~-  148 (254)
                      -+++++++|+..-...   +.++++|||++.+|||+||+|-.|-|-+.|+.+|+|+.+   +.+|+ .++|...    . 
T Consensus       255 ~~vL~V~~L~v~~~~~---~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~---~~~G~I~l~G~~v~~~~~~  328 (501)
T COG3845         255 EVVLEVEDLSVKDRRG---VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRK---PASGRILLNGKDVLGRLSP  328 (501)
T ss_pred             CeEEEEeeeEeecCCC---CceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCc---cCCceEEECCEeccccCCH
Confidence            5789999999876542   337799999999999999999999999999999999987   78898 5666432    1 


Q ss_pred             -----CCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHc------CC-CCCccHHHHHHHHHhhccC---CCCCCCCCChh
Q 025366          149 -----PDVATVLPMDGF-HLYLSQLDAMEDPKEAHARR------GA-PWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHG  212 (254)
Q Consensus       149 -----~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~------g~-~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G  212 (254)
                           ...++ |+-|-. +---.+++..+|........      ++ .+........++++.++..   ...++..||||
T Consensus       329 ~~~r~~G~~~-VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGG  407 (501)
T COG3845         329 RERRRLGLAY-VPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGG  407 (501)
T ss_pred             HHHHhcCCcc-CChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCc
Confidence                 11222 333221 10112356777765433221      11 1111122335566666553   45567799999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      .+||+-+||-|..+|++||+-.||-|||..+.+.+.+.|-
T Consensus       408 NqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~  447 (501)
T COG3845         408 NQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLL  447 (501)
T ss_pred             ceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHH
Confidence            9999999999999999999999999999999888887764

>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport

Probab=99.55  E-value=1.4e-14  Score=117.16  Aligned_cols=111  Identities=14%  Similarity=0.135  Sum_probs=72.5

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHH
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~  177 (254)
                      ...++.+.++.++.|+|||||||||+++.+...+-   ...|....+.      +  + ..+....     .. ...+  
T Consensus        12 ~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~---~~~~~~~~~~------~--~-~~g~~~~-----~~-~~~~--   71 (162)
T cd03227          12 VPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALG---GAQSATRRRS------G--V-KAGCIVA-----AV-SAEL--   71 (162)
T ss_pred             eccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHH---hcchhhhccC------c--c-cCCCcce-----ee-EEEE--
Confidence            34445566667999999999999999999887763   2222100000      0  0 0011000     00 0000  


Q ss_pred             HHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcC----CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       178 ~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~----~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                                               -.....+|+||+||+.+++++..    +|+++|+|||+.++|+..+..+.+.+.+
T Consensus        72 -------------------------i~~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~  126 (162)
T cd03227          72 -------------------------IFTRLQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILE  126 (162)
T ss_pred             -------------------------ehheeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence                                     00112399999999999999975    7899999999999999999888887643

These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.

>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms

Probab=99.55  E-value=8.9e-15  Score=120.21  Aligned_cols=45  Identities=18%  Similarity=0.147  Sum_probs=41.7

Q ss_pred             CChhhhhhHhhhhhhc----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          209 FDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       209 lS~G~~qrv~ia~al~----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+||+||+++|++++    .+|+++|+|||++++|+..+..+.+++.+
T Consensus        95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~  143 (178)
T cd03239          95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKE  143 (178)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999985    68999999999999999999999888753

SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=99.52  E-value=1.6e-14  Score=126.95  Aligned_cols=133  Identities=24%  Similarity=0.395  Sum_probs=98.8

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~  184 (254)
                      +...+|||+|+||||||||+++|.+++.+ ||..|           ...++.+|+++....   ..+... .....|+|.
T Consensus        60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~-~~~~g-----------~V~vi~~D~f~~~~~---~l~~~g-~~~~~g~P~  123 (290)
T TIGR00554        60 KIPYIISIAGSVAVGKSTTARILQALLSR-WPEHR-----------KVELITTDGFLHPNQ---VLKERN-LMKKKGFPE  123 (290)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhh-cCCCC-----------ceEEEecccccccHH---HHHHcC-CccccCCCh
Confidence            45689999999999999999999999841 22222           234578999875431   111111 123467788


Q ss_pred             CccHHHHHHHHHhhccCCC-CCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH------HHHHHHHHHhhc
Q 025366          185 TFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDE  253 (254)
Q Consensus       185 ~~~~~~~~~~l~~l~l~~~-~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~------~~~~~l~~ll~~  253 (254)
                      .++...+.+.+..+.-+.. +.+|.||+....++.-....+.+++|||+||.+...++      ..|..+.+++|.
T Consensus       124 s~D~~~l~~~L~~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~  199 (290)
T TIGR00554       124 SYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDF  199 (290)
T ss_pred             hccHHHHHHHHHHHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCE
Confidence            8999999999999988764 88999999998888755555688999999999888544      357778888875

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=99.51  E-value=1.9e-14  Score=120.28  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=29.7

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++++++++.  |++++|+||||||||||+|+|+|..
T Consensus        16 v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          16 VANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             ecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHH
Confidence            447777665  7999999999999999999999976

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]

Probab=99.50  E-value=6.8e-14  Score=126.39  Aligned_cols=150  Identities=19%  Similarity=0.139  Sum_probs=93.7

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (254)
                      -|.++|.+.+..+  +.  .+.+.|+.|-.|..+||+||||-||||||+.|+..--..             ++.+-.++.
T Consensus       264 DIKiEnF~ISA~G--k~--LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaI-------------PpnIDvLlC  326 (807)
T KOG0066|consen  264 DIKIENFDISAQG--KL--LFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAI-------------PPNIDVLLC  326 (807)
T ss_pred             cceeeeeeeeccc--ce--eeeccceEEEecceecccCCCCCchHHHHHHHHhhhccC-------------CCCCceEee
Confidence            3778888877765  33  458999999999999999999999999999998754110             222211111


Q ss_pred             CCCCCCCC------------------------------cCCChhhcHHHHHH-HcCCCCCccHHHHHHHHHhhccC---C
Q 025366          157 MDGFHLYL------------------------------SQLDAMEDPKEAHA-RRGAPWTFNPLLLLNCLKNLRNQ---G  202 (254)
Q Consensus       157 ~~~~~~~~------------------------------~~l~~~e~~~~~~~-~~g~~~~~~~~~~~~~l~~l~l~---~  202 (254)
                      -.......                              .+.++.+.+..... ...+.......+...+|.-|++.   .
T Consensus       327 EQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiGA~sAEarARRILAGLGFskEMQ  406 (807)
T KOG0066|consen  327 EQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIGADSAEARARRILAGLGFSKEMQ  406 (807)
T ss_pred             eeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhccccchhHHHHHHhhcCCChhHh
Confidence            11000000                              00111111111000 00011111223344555555554   3


Q ss_pred             CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHH
Q 025366          203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGV  243 (254)
Q Consensus       203 ~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~  243 (254)
                      +++...||||.|.||.+||||..+|.+|.|||||..||-..
T Consensus       407 ~rPt~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNA  447 (807)
T KOG0066|consen  407 ERPTTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNA  447 (807)
T ss_pred             cCCccccCCceeeehhHHHHHhcCceeeeecCCccccccce
Confidence            56677999999999999999999999999999999999754

>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes

Probab=99.49  E-value=2.7e-14  Score=121.30  Aligned_cols=109  Identities=14%  Similarity=0.089  Sum_probs=75.6

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      +.+|++++..++++++|.||||+|||||+++++-..-                      ..+-|.+++.     ..    
T Consensus        19 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~----------------------la~~g~~vpa-----~~----   67 (222)
T cd03285          19 IPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVIVL----------------------MAQIGCFVPC-----DS----   67 (222)
T ss_pred             EEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHHHH----------------------HHHhCCCcCc-----cc----
Confidence            4599999999999999999999999999999885431                      1222211110     00    


Q ss_pred             HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhh--cCCCcEEEEeCC---CCCCCHHHHHH
Q 025366          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVWKD  246 (254)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al--~~~p~vlIlDEp---~~~lD~~~~~~  246 (254)
                        ...+        .+.+++..+++... ....+|.|+++++.+++++  +.+|+++|+|||   |+++|......
T Consensus        68 --~~~~--------~~~~il~~~~l~d~-~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~~gT~~lD~~~~~~  132 (222)
T cd03285          68 --ADIP--------IVDCILARVGASDS-QLKGVSTFMAEMLETAAILKSATENSLIIIDELGRGTSTYDGFGLAW  132 (222)
T ss_pred             --EEEe--------ccceeEeeeccccc-hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCcCCCChHHHHHHHH
Confidence              0000        11222333333322 2578999999999999999  899999999999   88899976644

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=99.48  E-value=2.1e-14  Score=120.18  Aligned_cols=110  Identities=12%  Similarity=0.047  Sum_probs=66.2

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHH
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~  177 (254)
                      ...++++..|++++|+||||||||||+++|++..-  .+..|             .+++-...                 
T Consensus        20 ~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~--~~~~g-------------~~~~~~~~-----------------   67 (202)
T cd03243          20 VPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVL--LAQIG-------------CFVPAESA-----------------   67 (202)
T ss_pred             EeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHH--HHHcC-------------CCcccccc-----------------
Confidence            34566677899999999999999999999996541  01111             11110000                 


Q ss_pred             HHcCCCCCccHHHHHHHHHhhcc--CCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366          178 ARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (254)
Q Consensus       178 ~~~g~~~~~~~~~~~~~l~~l~l--~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~  249 (254)
                       ..++...        .+..+..  ........|+.+++| +..+.+.+.+|+++|+|||++++|+.....+..
T Consensus        68 -~i~~~dq--------i~~~~~~~d~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~  131 (202)
T cd03243          68 -SIPLVDR--------IFTRIGAEDSISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAY  131 (202)
T ss_pred             -ccCCcCE--------EEEEecCcccccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHH
Confidence             0010000        0000000  112233556677776 555567778999999999999999987776643

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=99.47  E-value=5.4e-14  Score=117.98  Aligned_cols=109  Identities=12%  Similarity=0.036  Sum_probs=73.0

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      +.+|++|+++.|++++|+||||+||||++++|+++.-               ....|..+  ....   ..++..+    
T Consensus        18 v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~---------------la~~G~~v--pa~~---~~l~~~d----   73 (204)
T cd03282          18 IPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI---------------MAQIGCFV--PAEY---ATLPIFN----   73 (204)
T ss_pred             EEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH---------------HHHcCCCc--chhh---cCccChh----
Confidence            4599999999999999999999999999999998863               22222211  0000   0011111    


Q ss_pred             HHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHH
Q 025366          176 AHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD  246 (254)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~  246 (254)
                                       .++..++..  .......||.|++|.. .+.+++.+|+++|+|||+.++|+.....
T Consensus        74 -----------------~I~~~~~~~d~~~~~~S~fs~e~~~~~-~il~~~~~~~lvllDE~~~gt~~~~~~~  128 (204)
T cd03282          74 -----------------RLLSRLSNDDSMERNLSTFASEMSETA-YILDYADGDSLVLIDELGRGTSSADGFA  128 (204)
T ss_pred             -----------------heeEecCCccccchhhhHHHHHHHHHH-HHHHhcCCCcEEEeccccCCCCHHHHHH
Confidence                             112222222  2345568899999764 5566778999999999999999965433

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.46  E-value=2.6e-13  Score=135.96  Aligned_cols=156  Identities=15%  Similarity=0.122  Sum_probs=117.1

Q ss_pred             eccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CCCeEEEeeCCCCCCCCcCC
Q 025366           94 LLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPDVATVLPMDGFHLYLSQL  167 (254)
Q Consensus        94 vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~~~g~~i~~~~~~~~~~~l  167 (254)
                      +.+++|++.-+++|+.+.++||.|||||||++.++|-+...--..|+ .++|...     +.+.++ +.+.+.+++.  +
T Consensus       128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY-~~e~DvH~p~--l  204 (1391)
T KOG0065|consen  128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAY-NSEQDVHFPE--L  204 (1391)
T ss_pred             ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEe-ccccccccce--e
Confidence            44679999999999999999999999999999999998643333455 5666322     233343 6666665554  8


Q ss_pred             ChhhcHHHHHHHcCC---CCC-ccHH----HHHHHHHhhccC-------CCCCCCCCChhhhhhHhhhhhhcCCCcEEEE
Q 025366          168 DAMEDPKEAHARRGA---PWT-FNPL----LLLNCLKNLRNQ-------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (254)
Q Consensus       168 ~~~e~~~~~~~~~g~---~~~-~~~~----~~~~~l~~l~l~-------~~~~~~~lS~G~~qrv~ia~al~~~p~vlIl  232 (254)
                      |+.+-+.+..+-.+.   .+. ...+    ....+++.+++.       .+..+.-.|||||+||.++-+++.+++++..
T Consensus       205 TVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~  284 (1391)
T KOG0065|consen  205 TVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFW  284 (1391)
T ss_pred             EEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeee
Confidence            999988887765443   111 1122    123567777775       3455678999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHhh
Q 025366          233 DGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       233 DEp~~~lD~~~~~~l~~ll~  252 (254)
                      ||++.|||....-++.+.+.
T Consensus       285 De~t~GLDSsTal~iik~lr  304 (1391)
T KOG0065|consen  285 DEITRGLDSSTAFQIIKALR  304 (1391)
T ss_pred             ecccccccHHHHHHHHHHHH
Confidence            99999999998888877664

>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules

Probab=99.45  E-value=2.7e-13  Score=118.81  Aligned_cols=46  Identities=17%  Similarity=0.034  Sum_probs=41.4

Q ss_pred             CCChhhhhhHhhhhhhcC----CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       208 ~lS~G~~qrv~ia~al~~----~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .||+||+||+++|++++.    +|+++|+|||+++||+..+..+.++|.+
T Consensus       170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~  219 (276)
T cd03241         170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKE  219 (276)
T ss_pred             hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            489999999999987543    9999999999999999999999988864

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]

Probab=99.45  E-value=1.1e-13  Score=118.79  Aligned_cols=133  Identities=35%  Similarity=0.601  Sum_probs=111.5

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~  184 (254)
                      +..-||||.|+.|+||||+.+.+.-++++ ||.          .+ ...++++|||+.++..+..    .-.+.+.|+|+
T Consensus        80 ~~pfIIgiaGsvavGKST~ar~L~~ll~~-~~~----------~~-~v~lvpmDGFhy~n~~L~~----~glm~rKGfPe  143 (283)
T COG1072          80 QRPFIIGIAGSVAVGKSTTARILQALLSR-WPE----------SP-KVDLVTMDGFHYPNAVLDE----RGLMARKGFPE  143 (283)
T ss_pred             CCCEEEEeccCccccHHHHHHHHHHHHhh-CCC----------CC-ceEEEeccccccCHhHhhh----ccccccCCCCc
Confidence            34679999999999999999999999962 222          22 3567999999988654432    22455789999


Q ss_pred             CccHHHHHHHHHhhccC-CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          185 TFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       185 ~~~~~~~~~~l~~l~l~-~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|...+.+.+..++-+ .++.+|.||+-....+.-+..+..+|||||+||....+|...|..+.+++|.
T Consensus       144 SyD~~~ll~fl~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDf  213 (283)
T COG1072         144 SYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDF  213 (283)
T ss_pred             cccHHHHHHHHHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceE
Confidence            99999999999999865 4599999999999999999999999999999999999999988888888774

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=99.40  E-value=8.5e-13  Score=109.94  Aligned_cols=111  Identities=26%  Similarity=0.410  Sum_probs=75.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccH
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~  188 (254)
                      ++||+|+||||||||+++|.+++.               .... .++..|+++...   ...+........++.+..++.
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l~---------------~~~~-~v~~~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~   61 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQLG---------------NPKV-VIISQDSYYKDL---SHEELEERKNNNYDHPDAFDF   61 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC---------------CCCe-EEEEeccccccc---ccccHHHhccCCCCCCCcccH
Confidence            589999999999999999999973               2233 357888876432   222211211223445666677


Q ss_pred             HHHHHHHHhhccCCCCCCCCC--ChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          189 LLLLNCLKNLRNQGSVYAPSF--DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       189 ~~~~~~l~~l~l~~~~~~~~l--S~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                      +.+.+.+..+..+.....+.|  +.|++++..+   .+.+++++|+|+++.+.++
T Consensus        62 ~~~~~~l~~l~~~~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~  113 (198)
T cd02023          62 DLLISHLQDLKNGKSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK  113 (198)
T ss_pred             HHHHHHHHHHHCCCCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence            777788888877755555544  5565554433   4678999999999999986

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PTZ00301 uridine kinase; Provisional

Probab=99.40  E-value=9.5e-13  Score=110.82  Aligned_cols=126  Identities=23%  Similarity=0.344  Sum_probs=92.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCcc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFN  187 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~  187 (254)
                      .+|||.|++|||||||.+.|...+..   ..         .+....++.+|+|+.....++..+   ....+++.|++++
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l~~---~~---------~~~~~~vi~~D~yy~~~~~~~~~~---~~~~~~d~p~a~D   68 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSELMA---HC---------GPVSIGVICEDFYYRDQSNIPESE---RAYTNYDHPKSLE   68 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHHHh---hc---------CCCeEEEeCCCCCccCcccCCHHH---hcCCCCCChhhhC
Confidence            68999999999999999988766520   00         122344588999887654444322   1123567788999


Q ss_pred             HHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          188 PLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       188 ~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ...+.+.+..+.-+..+..|.|++....|..-... +..++|+|+||.++..++    ++.+++|.
T Consensus        69 ~~~l~~~l~~L~~g~~i~~P~yd~~~~~~~~~~~~-i~p~~ViIvEGi~~l~~~----~l~~l~D~  129 (210)
T PTZ00301         69 HDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAVT-MTPKSVLIVEGILLFTNA----ELRNEMDC  129 (210)
T ss_pred             HHHHHHHHHHHHcCCcccCCCcccccCCcCCceEE-eCCCcEEEEechhhhCCH----HHHHhCCE
Confidence            99999999999988889999999888777753332 456799999999997776    56666664

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=99.39  E-value=1.3e-12  Score=109.33  Aligned_cols=124  Identities=27%  Similarity=0.382  Sum_probs=96.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT  185 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~  185 (254)
                      +.-+|||.|+|||||||+++.|.-.++               .. ...++.+|+|+......+..++.   ...+..|.+
T Consensus         7 ~~iiIgIaG~SgSGKTTva~~l~~~~~---------------~~-~~~~I~~D~YYk~~~~~~~~~~~---~~n~d~p~A   67 (218)
T COG0572           7 KVIIIGIAGGSGSGKTTVAKELSEQLG---------------VE-KVVVISLDDYYKDQSHLPFEERN---KINYDHPEA   67 (218)
T ss_pred             ceEEEEEeCCCCCCHHHHHHHHHHHhC---------------cC-cceEeeccccccchhhcCHhhcC---CcCccChhh
Confidence            457999999999999999999999984               23 34468999998765544433222   224556888


Q ss_pred             ccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          186 FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       186 ~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+.+.+.+..|..+..+..|.||+-+..|..-.. -..+.+|+|+||.+...|+    ++++++|.
T Consensus        68 ~D~dLl~~~L~~L~~g~~v~~P~yd~~~~~r~~~~i-~~~p~~VVIvEGi~~l~d~----~lr~~~d~  130 (218)
T COG0572          68 FDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETI-KVEPNDVVIVEGILLLYDE----RLRDLMDL  130 (218)
T ss_pred             hcHHHHHHHHHHHHcCCcccccccchhcccccCCcc-ccCCCcEEEEecccccccH----HHHhhcCE
Confidence            999999999999999999999999998888875222 2457799999999999996    67777664

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=99.37  E-value=1.5e-12  Score=117.45  Aligned_cols=139  Identities=17%  Similarity=0.223  Sum_probs=88.1

Q ss_pred             cceeeeeCCC-----eEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCC-cCCChhh
Q 025366           98 SALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAME  171 (254)
Q Consensus        98 ~~vsl~i~~G-----eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~-~~l~~~e  171 (254)
                      .+..|.|..|     +++..+|.||.|||||+++++|.++   |+.|..+      |...  |.+..+.+.. ..-++.+
T Consensus       353 g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~---pd~~~e~------p~ln--VSykpqkispK~~~tvR~  421 (592)
T KOG0063|consen  353 GDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLK---PDEGGEI------PVLN--VSYKPQKISPKREGTVRQ  421 (592)
T ss_pred             eeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCC---CCccCcc------cccc--eeccccccCccccchHHH
Confidence            4555666554     6899999999999999999999987   7776410      0000  1111111110 0112222


Q ss_pred             cHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHH
Q 025366          172 DPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSS  249 (254)
Q Consensus       172 ~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~  249 (254)
                      ...  ...+..  ..+..-..++++-|...  .+..+..||||+.||+++|..+-..+++.++|||.+.||.+.+.....
T Consensus       422 ll~--~kIr~a--y~~pqF~~dvmkpL~ie~i~dqevq~lSggelQRval~KOGGKpAdvYliDEpsAylDSeQRi~Ask  497 (592)
T KOG0063|consen  422 LLH--TKIRDA--YMHPQFVNDVMKPLQIENIIDQEVQGLSGGELQRVALALCLGKPADVYLIDEPSAYLDSEQRIIASK  497 (592)
T ss_pred             HHH--HHhHhh--hcCHHHHHhhhhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCCceEEecCchhhcChHHHHHHHH
Confidence            111  111111  11222334555544443  466778999999999999999999999999999999999998776655


Q ss_pred             Hh
Q 025366          250 MF  251 (254)
Q Consensus       250 ll  251 (254)
                      .+
T Consensus       498 vi  499 (592)
T KOG0063|consen  498 VI  499 (592)
T ss_pred             HH
Confidence            54

>TIGR00235 udk uridine kinase

Probab=99.35  E-value=1.8e-12  Score=108.85  Aligned_cols=117  Identities=24%  Similarity=0.377  Sum_probs=78.3

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~  184 (254)
                      ++|++++|+|+||||||||++.|+++++               ....+ ++.+|+++.........+   .....++.+.
T Consensus         4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~---------------~~~~~-~i~~D~~~~~~~~~~~~~---~~~~~~~~~~   64 (207)
T TIGR00235         4 PKGIIIGIGGGSGSGKTTVARKIYEQLG---------------KLEIV-IISQDNYYKDQSHLEMAE---RKKTNFDHPD   64 (207)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhc---------------ccCCe-EecccccccChhhCCHHH---hcCCCCCCcc
Confidence            5799999999999999999999999984               22334 478888754322111111   1111122344


Q ss_pred             CccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                      .++...+.+.++.+..+..+..+.|+.....+..- ...+...+++|+|+.++.+++
T Consensus        65 ~~~~~~l~~~l~~l~~g~~v~~p~yd~~~~~~~~~-~~~~~~~~~vIieG~~~~~~~  120 (207)
T TIGR00235        65 AFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKE-TVHIEPKDVVILEGIMPLFDE  120 (207)
T ss_pred             HhHHHHHHHHHHHHHCCCCEecccceeecCCCCCc-eEEeCCCCEEEEEehhhhchH
Confidence            55666677888888777778888887765555322 223456799999999887765

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK05439 pantothenate kinase; Provisional

Probab=99.34  E-value=1e-12  Score=116.29  Aligned_cols=132  Identities=28%  Similarity=0.383  Sum_probs=98.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT  185 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~  185 (254)
                      ..-+|||.|++|||||||++.|..++.+   ..+        ... ..++.+|||+..+..+.  +  .-....+|.|++
T Consensus        85 ~~~iIgIaG~~gsGKSTla~~L~~~l~~---~~~--------~~~-v~vi~~DdFy~~~~~l~--~--~~l~~~kg~Pes  148 (311)
T PRK05439         85 VPFIIGIAGSVAVGKSTTARLLQALLSR---WPE--------HPK-VELVTTDGFLYPNAVLE--E--RGLMKRKGFPES  148 (311)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHh---hCC--------CCc-eEEEeccccccCHHHHh--h--hhccccCCCccc
Confidence            3569999999999999999999998741   000        123 34599999987643221  1  112234678999


Q ss_pred             ccHHHHHHHHHhhccCCC-CCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH--HHHHHHHHhhc
Q 025366          186 FNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG--VWKDVSSMFDE  253 (254)
Q Consensus       186 ~~~~~~~~~l~~l~l~~~-~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~--~~~~l~~ll~~  253 (254)
                      ++...+.+.+..+.-+.. +.+|.||+-...++.-....+..++|||+||.+.+.++.  .|..+.+++|.
T Consensus       149 ~D~~~l~~~L~~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~  219 (311)
T PRK05439        149 YDMRALLRFLSDVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDF  219 (311)
T ss_pred             ccHHHHHHHHHHHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCE
Confidence            999999999999998875 889999998888875444456789999999999886554  57778888775

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=99.32  E-value=3.4e-12  Score=108.89  Aligned_cols=131  Identities=42%  Similarity=0.715  Sum_probs=91.0

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE-eeCCCCCCCCcCCChhhcHHHHHHHcCC
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV-LPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~-i~~~~~~~~~~~l~~~e~~~~~~~~~g~  182 (254)
                      -.+..++||+|+||||||||++.|+++++   ++.|.           ..+ +.+|+++.....   ..... .....+.
T Consensus        30 ~~~~~iigi~G~~GsGKTTl~~~L~~~l~---~~~g~-----------~~v~i~~D~~~~~~~~---~~~~g-~~~~~~~   91 (229)
T PRK09270         30 PQRRTIVGIAGPPGAGKSTLAEFLEALLQ---QDGEL-----------PAIQVPMDGFHLDNAV---LDAHG-LRPRKGA   91 (229)
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHHhh---hccCC-----------ceEEEecccccCCHHH---HHhcc-cccccCC
Confidence            35578999999999999999999999995   33331           123 677877543210   00000 0112345


Q ss_pred             CCCccHHHHHHHHHhhccCC-CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          183 PWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       183 ~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +..++...+.+++..+..+. ....+.|+..+.+.+.-...+...++++|+|+.+..++...|..+.+.+|
T Consensus        92 ~~~~d~~~~~~~l~~l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D  162 (229)
T PRK09270         92 PETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFD  162 (229)
T ss_pred             CCCCCHHHHHHHHHHHHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCC
Confidence            66777888888888888776 77888898888776654333444678999999999988777777766654

>PRK05480 uridine/cytidine kinase; Provisional

Probab=99.30  E-value=1.4e-11  Score=103.45  Aligned_cols=117  Identities=26%  Similarity=0.405  Sum_probs=80.0

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCC
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPW  184 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~  184 (254)
                      .++.+|+|.|+||||||||++.|++.+.               ..... ++.+|+++.....++..+   .....++.+.
T Consensus         4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~---------------~~~~~-~i~~D~~~~~~~~~~~~~---~~~~~~~~~~   64 (209)
T PRK05480          4 KKPIIIGIAGGSGSGKTTVASTIYEELG---------------DESIA-VIPQDSYYKDQSHLSFEE---RVKTNYDHPD   64 (209)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhC---------------CCceE-EEeCCccccCcccCCHHH---hcccCccCcc
Confidence            4688999999999999999999999983               23333 478888866543222211   1112334466


Q ss_pred             CccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                      .++...+.+.+..+..+..+..+.|+.....+..-. ......+++|+|++++..++
T Consensus        65 ~~~~~~l~~~l~~l~~~~~v~~p~~d~~~~~~~~~~-~~~~~~~~vivEg~~l~~~~  120 (209)
T PRK05480         65 AFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKET-IRVEPKDVIILEGILLLEDE  120 (209)
T ss_pred             cccHHHHHHHHHHHHcCCccccCcccccccccCCCe-EEeCCCCEEEEEeehhcCch
Confidence            677788888888887777777777765544443311 12456789999999998765

>PRK00635 excinuclease ABC subunit A; Provisional

Probab=99.28  E-value=4e-11  Score=125.31  Aligned_cols=66  Identities=11%  Similarity=-0.068  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCC---CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          188 PLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       188 ~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~---p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ....++.|+.++++   .....+.|||||.||+.+|..|..+   +.++||||||.||++...+.+.++|++
T Consensus      1676 i~~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~ 1747 (1809)
T PRK00635       1676 IQKPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRT 1747 (1809)
T ss_pred             HHHHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            44557778888887   4667889999999999999999754   789999999999999999999998764

>PLN02796 D-glycerate 3-kinase

Probab=99.27  E-value=6.4e-12  Score=112.22  Aligned_cols=133  Identities=24%  Similarity=0.340  Sum_probs=88.4

Q ss_pred             cccceeeee---CCCe-----EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCC
Q 025366           96 PTSALASNV---NVKH-----IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQL  167 (254)
Q Consensus        96 al~~vsl~i---~~Ge-----ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l  167 (254)
                      +++++++.+   ++|+     ++||+|++|||||||++.|.+++.   +. |         ...+. +.+|++++...+.
T Consensus        81 il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~---~~-g---------~~~g~-IsiDdfYLt~~e~  146 (347)
T PLN02796         81 CEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFN---AT-G---------RRAAS-LSIDDFYLTAADQ  146 (347)
T ss_pred             HHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhc---cc-C---------CceeE-EEECCcccchhhH
Confidence            457888877   4455     599999999999999999999994   11 1         12454 8899988643211


Q ss_pred             Chh--hcH-HHHHHHcCCCCCccHHHHHHHHHhhc----cCCCCCCCCCCh----hhhhhHhh--hhhhcCCCcEEEEeC
Q 025366          168 DAM--EDP-KEAHARRGAPWTFNPLLLLNCLKNLR----NQGSVYAPSFDH----GVGDPVED--DILVGLQHKVVIVDG  234 (254)
Q Consensus       168 ~~~--e~~-~~~~~~~g~~~~~~~~~~~~~l~~l~----l~~~~~~~~lS~----G~~qrv~i--a~al~~~p~vlIlDE  234 (254)
                      ...  ++. ......+|.+..++.....+.++.+.    -+..+.+|.|+.    |+.+|..-  ...+...++|||+|+
T Consensus       147 ~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EG  226 (347)
T PLN02796        147 AKLAEANPGNALLELRGNAGSHDLALGVETLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEG  226 (347)
T ss_pred             HHHHhhCcchhhhhcCCCCchhHHHHHHHHHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcC
Confidence            100  111 11122446677778877888888776    356678888875    44557543  223446779999999


Q ss_pred             CCCCCCHH
Q 025366          235 NYLFLDGG  242 (254)
Q Consensus       235 p~~~lD~~  242 (254)
                      .+.|.-+.
T Consensus       227 w~vG~~p~  234 (347)
T PLN02796        227 WMLGFKPL  234 (347)
T ss_pred             cccCCCCC
Confidence            99998553

>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage

Probab=99.26  E-value=3.7e-11  Score=105.04  Aligned_cols=47  Identities=15%  Similarity=0.075  Sum_probs=42.4

Q ss_pred             CCCCChhhhhhHhhhhhhc---------CCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          206 APSFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       206 ~~~lS~G~~qrv~ia~al~---------~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ...+|.||+|++.+|++|+         .+|+++|+|||+++||+..++.+.+.+.
T Consensus       181 ~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~  236 (270)
T cd03242         181 ADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIE  236 (270)
T ss_pred             HHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhh
Confidence            3457999999999999874         7999999999999999999999999874

When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]

Probab=99.26  E-value=7.8e-11  Score=113.42  Aligned_cols=63  Identities=14%  Similarity=0.019  Sum_probs=51.1

Q ss_pred             HHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC---cEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       190 ~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p---~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +.++.|..++++   .-.....||||+.||+-+|..|....   .+.||||||+||-..-.++++++|+
T Consensus       801 rkLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~  869 (935)
T COG0178         801 RKLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLH  869 (935)
T ss_pred             HHHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHH
Confidence            344555556665   34567899999999999999996666   8999999999999988888888775

>TIGR01069 mutS2 MutS2 family protein

Probab=99.23  E-value=1.3e-11  Score=121.56  Aligned_cols=114  Identities=10%  Similarity=0.054  Sum_probs=72.9

Q ss_pred             ceeeeeCCC-eEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHH
Q 025366           99 ALASNVNVK-HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH  177 (254)
Q Consensus        99 ~vsl~i~~G-eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~  177 (254)
                      .+++.+..+ ++++|.||||+|||||+|+|+|..-               .+..|..++......    +...      .
T Consensus       313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l---------------~aq~G~~Vpa~~~~~----~~~~------d  367 (771)
T TIGR01069       313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLAL---------------MFQSGIPIPANEHSE----IPYF------E  367 (771)
T ss_pred             eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHH---------------HHHhCCCccCCcccc----ccch------h
Confidence            467888777 8999999999999999999999831               122221122211000    0000      0


Q ss_pred             HHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH-HHh
Q 025366          178 ARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMF  251 (254)
Q Consensus       178 ~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~-~ll  251 (254)
                      ..+.   .....  .++        ......||+||++++.+..++ .++.++|+|||++|+|+.....+. .++
T Consensus       368 ~i~~---~i~~~--~si--------~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiL  428 (771)
T TIGR01069       368 EIFA---DIGDE--QSI--------EQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISIL  428 (771)
T ss_pred             heee---ecChH--hHH--------hhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHH
Confidence            0110   00000  111        123567999999999888766 689999999999999999887773 444

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=99.20  E-value=5e-12  Score=104.44  Aligned_cols=45  Identities=7%  Similarity=-0.141  Sum_probs=33.3

Q ss_pred             CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 025366          203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (254)
Q Consensus       203 ~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~  248 (254)
                      ......||+|++|...+.. .+.+|+++|+|||+.++|+.....+.
T Consensus        56 ~~~~s~fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~  100 (185)
T smart00534       56 AQGLSTFMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIA  100 (185)
T ss_pred             hccccHHHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHH
Confidence            3445688888887544433 34599999999999999998666653

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=99.18  E-value=1.5e-10  Score=97.74  Aligned_cols=33  Identities=12%  Similarity=-0.118  Sum_probs=28.9

Q ss_pred             hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHH
Q 025366          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW  244 (254)
Q Consensus       212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~  244 (254)
                      -+-+|++++++++.++.++|+|||+.++|+...
T Consensus        94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~  126 (213)
T cd03281          94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDG  126 (213)
T ss_pred             HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHH
Confidence            556888899999999999999999999998653

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes

Probab=99.17  E-value=3.6e-11  Score=101.76  Aligned_cols=35  Identities=26%  Similarity=0.245  Sum_probs=31.6

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.+++++++.+ ++++|+||||+|||||+|.+++..
T Consensus        20 v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~   54 (216)
T cd03284          20 VPNDTELDPER-QILLITGPNMAGKSTYLRQVALIA   54 (216)
T ss_pred             EeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHH
Confidence            45999999886 999999999999999999998765

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=99.16  E-value=4.2e-12  Score=105.59  Aligned_cols=127  Identities=30%  Similarity=0.439  Sum_probs=83.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHH--HHHcCCCCCc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--HARRGAPWTF  186 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~--~~~~g~~~~~  186 (254)
                      ||||.|++|||||||.+.|...+.    ..|.     ......+ ++.+++++...   ...+.....  ...+..+..+
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~----~~~~-----~~~~~~~-~~~~d~~~~~~---~~~~~~~~~~~~~~~~~p~a~   67 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILN----KRGI-----PAMEMDI-ILSLDDFYDDY---HLRDRKGRGENRYNFDHPDAF   67 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHT----TCTT-----TCCCSEE-EEEGGGGBHHH---HHHHHHHHCTTTSSTTSGGGB
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC----ccCc-----CccceeE-EEeeccccccc---chhhHhhccccccCCCCcccc
Confidence            699999999999999999999994    1110     0001123 36677764221   011110000  0012336678


Q ss_pred             cHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       187 ~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +...+.+.+..|.-+.....|.|++....+.. ...+..+++|||+||.++.+|+.    +.+++|.
T Consensus        68 d~~~l~~~l~~L~~g~~i~~p~yd~~~~~~~~-~~~~~~~~~ivIvEG~~~l~~~~----l~~l~D~  129 (194)
T PF00485_consen   68 DFDLLKEDLKALKNGGSIEIPIYDFSTGDRDP-WIIIISPSDIVIVEGIYALYDEE----LRDLFDL  129 (194)
T ss_dssp             SHHHHHHHHHHHHTTSCEEEEEEETTTTEEEE-EEEEEES-SEEEEEETTTTSSHC----HGGG-SE
T ss_pred             CHHHHHHHHHHHhCCCccccccccccccccee-eeeecCCCCEEEEcccceeeeee----eccccee
Confidence            88888999999988888888999988777776 33345688999999999999974    5555553

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=99.13  E-value=2.1e-10  Score=94.86  Aligned_cols=120  Identities=24%  Similarity=0.325  Sum_probs=82.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccH
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~  188 (254)
                      +|+|.|++|||||||++.|+..+.                 . ..++.+|+++.....+....+   ....++.+..++.
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~~-----------------~-~~~i~~Ddf~~~~~~~~~~~~---~~~~~d~p~a~D~   59 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRILP-----------------N-CCVIHQDDFFKPEDEIPVDEN---GFKQWDVLEALDM   59 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHcC-----------------C-CeEEccccccCCcccCChHhh---cCCCCCCcccccH
Confidence            589999999999999999999872                 1 235899999876544332211   1224566788888


Q ss_pred             HHHHHHHHhhccCCCCCCCCCChhhhhhHh-------------hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVE-------------DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~-------------ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ..+.+.+..+.-+.....+.++.+......             -+.......+++|+|+++...|+    .+.+++|.
T Consensus        60 ~~l~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~----~l~~l~D~  133 (187)
T cd02024          60 EAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYK----PLVDLFDI  133 (187)
T ss_pred             HHHHHHHHHHHcCCCccCcccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCH----HHHhhcCc
Confidence            999999998887765555555554432211             12223567789999999988877    45566654

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.12  E-value=1.5e-10  Score=97.54  Aligned_cols=47  Identities=6%  Similarity=-0.077  Sum_probs=40.9

Q ss_pred             CCCChh--hhhhHhhhhhhcCCCcEEEEeCCC-----CCCCHHHHHHHHHHhhc
Q 025366          207 PSFDHG--VGDPVEDDILVGLQHKVVIVDGNY-----LFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       207 ~~lS~G--~~qrv~ia~al~~~p~vlIlDEp~-----~~lD~~~~~~l~~ll~~  253 (254)
                      ...+++  +++++.+|++++.+|+++++|||+     ++||+..++.+.+++.+
T Consensus       149 Sa~~~~~v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~  202 (215)
T PTZ00132        149 SAKSNYNFEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQA  202 (215)
T ss_pred             eCCCCCCHHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHH
Confidence            334444  888899999999999999999999     99999999999998864

>PLN02318 phosphoribulokinase/uridine kinase

Probab=99.12  E-value=1e-10  Score=110.51  Aligned_cols=115  Identities=25%  Similarity=0.401  Sum_probs=81.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF  186 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~  186 (254)
                      --+|||.||||||||||++.|+++++                 ..+ +|.+|+|+...    .     .....+..+..+
T Consensus        65 riIIGIaGpSGSGKTTLAk~LaglLp-----------------~vg-vIsmDdy~~~~----~-----~i~~nfD~P~a~  117 (656)
T PLN02318         65 IILVGVAGPSGAGKTVFTEKVLNFMP-----------------SIA-VISMDNYNDSS----R-----IIDGNFDDPRLT  117 (656)
T ss_pred             eEEEEEECCCCCcHHHHHHHHHhhCC-----------------CcE-EEEEcceecch----h-----hhCccCCChhhc
Confidence            46999999999999999999999872                 234 48899875221    0     001122234445


Q ss_pred             cHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       187 ~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +...+.+.++.|.-+..+..|.|++-...|..-....+...+|||+||.++..+     ++.+++|.
T Consensus       118 D~d~L~enL~~Lr~GksV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~~-----~Lr~LlDl  179 (656)
T PLN02318        118 DYDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-----KLRPLLDL  179 (656)
T ss_pred             chhHHHHHHHHHhCCCceecCccccccCcccCCceeecCCCcEEEEechhhccH-----hHHhhCCE
Confidence            556677778888888888999999887777532223356789999999999753     56776664

>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []

Probab=99.11  E-value=1.4e-10  Score=97.92  Aligned_cols=61  Identities=18%  Similarity=0.095  Sum_probs=43.9

Q ss_pred             HHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhh----cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al----~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ..+...+..+.+..    ..+||||+..+++|..+    ..+.+++||||+.+.||...+..+.++|.+
T Consensus       121 ~~~~~~l~~~~i~~----~~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~  185 (220)
T PF02463_consen  121 KDLEELLPEVGISP----EFLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKE  185 (220)
T ss_dssp             HHHHHHHHCTTTTT----TGS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHH
T ss_pred             cccccccccccccc----ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            34445555444333    39999999999988554    467899999999999999999999998864

The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....

>PLN03046 D-glycerate 3-kinase; Provisional

Probab=99.10  E-value=3.3e-10  Score=103.21  Aligned_cols=118  Identities=22%  Similarity=0.288  Sum_probs=78.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHH--------H
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA--------H  177 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~--------~  177 (254)
                      +.-+|||+|++|||||||++.|.++++   +.          ....+. |.+|++++..     .+.....        .
T Consensus       211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~---~~----------g~~vgv-ISiDDfYLt~-----eer~kL~~~nP~n~LL  271 (460)
T PLN03046        211 PPLVIGFSAPQGCGKTTLVFALDYLFR---VT----------GRKSAT-LSIDDFYLTA-----EGQAELRERNPGNALL  271 (460)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHhc---cc----------CCceEE-EEECCccCCh-----HHHHHHHhhCccchhh
Confidence            347999999999999999999999984   11          112454 8999998532     2211111        1


Q ss_pred             HHcCCCCCccHHHHHHHHHhh----ccCCCCCCCCCCh----hhhhhHhhh--hhhcCCCcEEEEeCCCCCCCHH
Q 025366          178 ARRGAPWTFNPLLLLNCLKNL----RNQGSVYAPSFDH----GVGDPVEDD--ILVGLQHKVVIVDGNYLFLDGG  242 (254)
Q Consensus       178 ~~~g~~~~~~~~~~~~~l~~l----~l~~~~~~~~lS~----G~~qrv~ia--~al~~~p~vlIlDEp~~~lD~~  242 (254)
                      ..+|.+..++.....+.++.+    ..+..+.+|.|+.    |+..|+...  ..+...+||||+||.+.|..+.
T Consensus       272 ~~RG~PGTHDv~Lg~e~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~  346 (460)
T PLN03046        272 ELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPL  346 (460)
T ss_pred             cccCCCccccHhhHHHHHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCC
Confidence            123445566666666666655    3456777888875    456676442  3345667999999999887553

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=99.06  E-value=6.9e-10  Score=97.15  Aligned_cols=106  Identities=27%  Similarity=0.404  Sum_probs=68.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC----CC
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA----PW  184 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~----~~  184 (254)
                      ++||+|+||||||||++.|++++.                +..+.++..|+++..    ...+     +...|+    +.
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~----------------~~~~~vi~~Dd~~~~----~~~~-----r~~~g~~~~~p~   55 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFG----------------SDLVTVICLDDYHSL----DRKG-----RKETGITALDPR   55 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhC----------------CCceEEEECcccccC----CHHH-----HHHhhccccccc
Confidence            589999999999999999999984                333545777766432    1111     112222    22


Q ss_pred             CccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                      ..+...+.+.++.+.-+.....|.|++-......  ...+...+++|+|+++...++
T Consensus        56 ~~~~d~l~~~l~~Lk~g~~i~~P~y~~~~~~~~~--~~~i~~~~ivIvEG~~~l~~~  110 (273)
T cd02026          56 ANNFDLMYEQLKALKEGQAIEKPIYNHVTGLIDP--PELIKPTKIVVIEGLHPLYDE  110 (273)
T ss_pred             chhHHHHHHHHHHHHCCCCcccccccccCCCcCC--cEEcCCCCEEEEeeehhhCch
Confidence            3334555667777777777777888765543221  112345799999999987775

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK08533 flagellar accessory protein FlaH; Reviewed

Probab=99.03  E-value=2.1e-09  Score=91.79  Aligned_cols=118  Identities=16%  Similarity=0.102  Sum_probs=66.9

Q ss_pred             eCCCeEEEEECCCCCcHHHH-HHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC
Q 025366          104 VNVKHIVGLAGPPGAGKSTL-AAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTL-lk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~  182 (254)
                      +++|++++|.|+|||||||| ++.+++..+               ....+.++..+.        +..+..... ..+|+
T Consensus        21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~---------------~g~~~~yi~~e~--------~~~~~~~~~-~~~g~   76 (230)
T PRK08533         21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ---------------NGYSVSYVSTQL--------TTTEFIKQM-MSLGY   76 (230)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHh---------------CCCcEEEEeCCC--------CHHHHHHHH-HHhCC
Confidence            68899999999999999999 689998864               222233333221        222222222 23443


Q ss_pred             CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhh----cCCCcEEEEeCCCCCC----CHHHHHHHHHHhh
Q 025366          183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFL----DGGVWKDVSSMFD  252 (254)
Q Consensus       183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al----~~~p~vlIlDEp~~~l----D~~~~~~l~~ll~  252 (254)
                      .    ...... ...+.. .+.. +.++++..++..+.+.+    ..+|+++++|||++++    |+..++++.+++.
T Consensus        77 ~----~~~~~~-~~~l~~-~~~~-~~~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~  147 (230)
T PRK08533         77 D----INKKLI-SGKLLY-IPVY-PLLSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFK  147 (230)
T ss_pred             c----hHHHhh-cCcEEE-EEec-ccccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHH
Confidence            1    111100 011111 1112 34566554443333332    2369999999999998    7776777777764

>PLN02348 phosphoribulokinase

Probab=99.02  E-value=5.6e-10  Score=101.22  Aligned_cols=122  Identities=22%  Similarity=0.299  Sum_probs=82.2

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCC----CCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS----QVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR  179 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~----~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~  179 (254)
                      +..-+|||.|++|||||||++.|...+.    ..+. ...+    +....+...++.+|+|+.....         .+..
T Consensus        47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg----~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~dr~---------~r~~  113 (395)
T PLN02348         47 DGTVVIGLAADSGCGKSTFMRRLTSVFG----GAAKPPKGGNPDSNTLISDTTTVICLDDYHSLDRT---------GRKE  113 (395)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHh----hccCCCccccccccccccCceEEEEcccccCCChh---------hHhh
Confidence            3457999999999999999999999984    1111 0011    0111234557999999764321         0111


Q ss_pred             cC----CCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          180 RG----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       180 ~g----~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                      .+    .+...+...+.+.++.|..+..+..|.|++-...+.. . ..+..++|||+|+.+...|+
T Consensus       114 ~g~t~ldP~a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~-~-e~I~p~~VVIVEGlh~L~~e  177 (395)
T PLN02348        114 KGVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDP-P-ELIEPPKILVIEGLHPMYDE  177 (395)
T ss_pred             cCCccCCcccccHHHHHHHHHHHHCCCcEEeeccccCCCCcCC-c-EEcCCCcEEEEechhhccCc
Confidence            11    1455667778888988988888888998876655432 2 23567899999999998886

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=99.01  E-value=4.7e-10  Score=92.26  Aligned_cols=112  Identities=24%  Similarity=0.360  Sum_probs=75.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccH
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP  188 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~  188 (254)
                      +++|.|++|||||||++.|...+.    ..|         .. ..++.+|+|+.+..  .  +  ......+..+..++.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~----~~~---------~~-~~~i~~Ddf~~~~~--~--~--~~~~g~~d~~~~~d~   60 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLR----VNG---------IG-PVVISLDDYYVPRK--T--P--RDEDGNYDFESILDL   60 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH----HcC---------CC-EEEEehhhcccCcc--c--c--cccCCCCCCCccccH
Confidence            589999999999999999999883    111         12 33588999876430  0  0  000011222223467


Q ss_pred             HHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCC
Q 025366          189 LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (254)
Q Consensus       189 ~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD  240 (254)
                      +.+.+.+..+..+.....|.|+.-..++..-....+.+.+|||+|+.++..+
T Consensus        61 ~~l~~~l~~l~~~~~~~~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~~  112 (179)
T cd02028          61 DLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALNE  112 (179)
T ss_pred             HHHHHHHHHHHCCCeeecccceeECCccCCCceEEeCCCCEEEEecHHhcCH
Confidence            7788888888877778888888766666543222456789999999999754

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=98.98  E-value=3.9e-10  Score=111.47  Aligned_cols=110  Identities=13%  Similarity=0.040  Sum_probs=68.8

Q ss_pred             eeeeeC-CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHH
Q 025366          100 LASNVN-VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (254)
Q Consensus       100 vsl~i~-~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~  178 (254)
                      .++.+. .+.++.|.|||++||||+||.++...-               ....|..|+-...    ..++..+.+.   .
T Consensus       319 ndi~l~~~~~~~iITGpN~gGKTt~lktigl~~~---------------maq~G~~vpa~~~----~~i~~~~~i~---~  376 (782)
T PRK00409        319 KDISLGFDKTVLVITGPNTGGKTVTLKTLGLAAL---------------MAKSGLPIPANEP----SEIPVFKEIF---A  376 (782)
T ss_pred             ceeEECCCceEEEEECCCCCCcHHHHHHHHHHHH---------------HHHhCCCcccCCC----ccccccceEE---E
Confidence            344444 357899999999999999999976631               1222221222110    0011111100   0


Q ss_pred             HcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 025366          179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (254)
Q Consensus       179 ~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~  248 (254)
                      ..|..+                ........||+||++++.+++++ .+|.++|+|||+.|+|+.....+.
T Consensus       377 ~ig~~~----------------si~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala  429 (782)
T PRK00409        377 DIGDEQ----------------SIEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALA  429 (782)
T ss_pred             ecCCcc----------------chhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHH
Confidence            111000                01235678999999999999888 789999999999999998777664

>PRK06793 fliI flagellum-specific ATP synthase; Validated

Probab=98.98  E-value=2.2e-09  Score=99.05  Aligned_cols=135  Identities=13%  Similarity=0.157  Sum_probs=88.6

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (254)
                      +.++.+.+++.|....   .+++. .|.+.+|+.++|+|+||+|||||+++|++..+                ++.+. +
T Consensus       129 ~~~~r~~i~~~l~TGi---raID~-ll~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~----------------~~~gv-I  187 (432)
T PRK06793        129 HAFEREEITDVFETGI---KSIDS-MLTIGIGQKIGIFAGSGVGKSTLLGMIAKNAK----------------ADINV-I  187 (432)
T ss_pred             CchheechhhccCCCC---EEEec-cceecCCcEEEEECCCCCChHHHHHHHhccCC----------------CCeEE-E
Confidence            3566777888886532   25566 59999999999999999999999999999883                44454 4


Q ss_pred             eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhc-------CCCc
Q 025366          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHK  228 (254)
Q Consensus       156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~-------~~p~  228 (254)
                      ...|..-    .++.+.........++...            +   .-....+.|.+++.|++.+.+.+       .++-
T Consensus       188 ~~iGerg----~ev~e~~~~~l~~~gl~~t------------v---vv~~tsd~s~~~r~ra~~~a~~iAEyfr~~G~~V  248 (432)
T PRK06793        188 SLVGERG----REVKDFIRKELGEEGMRKS------------V---VVVATSDESHLMQLRAAKLATSIAEYFRDQGNNV  248 (432)
T ss_pred             EeCCCCc----ccHHHHHHHHhhhccccee------------E---EEEECCCCCHHHHHHHHHHHHHHHHHHHHcCCcE
Confidence            4433311    1222221111111111000            0   01345678899999999877665       7889


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +||+|++|...|+.  +++..++.
T Consensus       249 LlilDslTr~a~A~--reisl~~~  270 (432)
T PRK06793        249 LLMMDSVTRFADAR--RSVDIAVK  270 (432)
T ss_pred             EEEecchHHHHHHH--HHHHHHhc
Confidence            99999999999984  66655543

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=98.97  E-value=8.8e-10  Score=93.62  Aligned_cols=36  Identities=17%  Similarity=0.121  Sum_probs=33.3

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.+++++.+.+|++++|.||||+||||++++|++..
T Consensus        20 v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~   55 (222)
T cd03287          20 VPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALIT   55 (222)
T ss_pred             EEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            459999999999999999999999999999999943

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.96  E-value=6.5e-10  Score=83.43  Aligned_cols=33  Identities=30%  Similarity=0.365  Sum_probs=31.6

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~  128 (254)
                      +|++++|++++|++++|+||||||||||++++.
T Consensus         4 aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820           4 SLHGVLVDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            779999999999999999999999999999976

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification]

Probab=98.95  E-value=5e-10  Score=101.29  Aligned_cols=142  Identities=12%  Similarity=0.029  Sum_probs=84.6

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCC----CCCCeEEEeeCCCCCC--CCcCC---ChhhcHHH
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV----KPPDVATVLPMDGFHL--YLSQL---DAMEDPKE  175 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~----~~~~~g~~i~~~~~~~--~~~~l---~~~e~~~~  175 (254)
                      .+|++.|++|-||-||||-+++++|-++   |..|....+..    .....|.  .+.++..  ...++   ...+.+..
T Consensus        98 rpg~vlglvgtngigkstAlkilagk~k---pnlg~~~~pp~w~~il~~frgs--elq~yftk~le~~lk~~~kpQyvd~  172 (592)
T KOG0063|consen   98 RPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRYDNPPDWQEILTYFRGS--ELQNYFTKILEDNLKAIIKPQYVDQ  172 (592)
T ss_pred             CcchhccccccCcccHHHHHHHHhCCCC---CCCCCCCCCcchHHHhhhhhhH--HHhhhhhhhccccccCcCChHHHHH
Confidence            4599999999999999999999999997   87776322110    0000010  0000000  00000   00111111


Q ss_pred             HH-HHc----CC-CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHH
Q 025366          176 AH-ARR----GA-PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV  247 (254)
Q Consensus       176 ~~-~~~----g~-~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l  247 (254)
                      .. ...    +. ....+.....++.+.+.+.  .++.+.++|||+.||.++|.+.+.++|+.++|||-+.||...+...
T Consensus       173 ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLka  252 (592)
T KOG0063|consen  173 IPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKA  252 (592)
T ss_pred             HHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhH
Confidence            10 000    00 0111112233444444443  5678889999999999999999999999999999999999887665


Q ss_pred             HHHh
Q 025366          248 SSMF  251 (254)
Q Consensus       248 ~~ll  251 (254)
                      ...|
T Consensus       253 A~~I  256 (592)
T KOG0063|consen  253 AITI  256 (592)
T ss_pred             HHHH
Confidence            5544

>PRK07429 phosphoribulokinase; Provisional

Probab=98.93  E-value=4.9e-09  Score=93.92  Aligned_cols=109  Identities=25%  Similarity=0.397  Sum_probs=71.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC---
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA---  182 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~---  182 (254)
                      +.-++||.|+||||||||++.|++++.                +..+.++.+|+++..    ...     .++..+.   
T Consensus         7 ~~~IIgI~G~SGSGKSTla~~L~~ll~----------------~~~~~vi~~Dd~~~~----~~~-----~r~~~g~~~l   61 (327)
T PRK07429          7 RPVLLGVAGDSGCGKTTFLRGLADLLG----------------EELVTVICTDDYHSY----DRK-----QRKELGITAL   61 (327)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHhHhc----------------cCceEEEEecccccC----CHH-----HHHhcCCccc
Confidence            346999999999999999999999984                333445788887422    111     1122332   


Q ss_pred             -CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          183 -PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       183 -~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                       +...+...+.+.++.+..+..+..|.|+........-  ..+...+++|+|+++...+.
T Consensus        62 ~p~~~~~d~l~~~l~~L~~g~~I~~P~yd~~~g~~~~~--~~i~p~~iVIvEG~~~l~~~  119 (327)
T PRK07429         62 DPRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPP--EYIEPNKIVVVEGLHPLYDE  119 (327)
T ss_pred             CccchHHHHHHHHHHHHHCCCceecceeecCCCCcCCc--EecCCCcEEEEechhhcCcH
Confidence             3334455666777777777777777776654443221  12345689999999988775

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=98.93  E-value=5.2e-09  Score=91.35  Aligned_cols=30  Identities=23%  Similarity=0.367  Sum_probs=26.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      .-++|+||||||||||+++|+|++.   |+.|+
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~---~~~G~  141 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILS---TGISQ  141 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccC---CCCce
Confidence            6789999999999999999999995   55543

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=98.89  E-value=1.1e-08  Score=88.51  Aligned_cols=126  Identities=17%  Similarity=0.131  Sum_probs=81.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHH---HHcCC--C
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH---ARRGA--P  183 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~---~~~g~--~  183 (254)
                      ++||.|.+||||||+.+.|...+.+              ......++..|+|+.+.. ....+......   .++..  |
T Consensus         1 IIgItG~SGSGKTTv~~~l~~~l~~--------------~g~~v~vI~~D~yyr~~r-~~~~~~~~~a~~~~~nfdHf~P   65 (277)
T cd02029           1 VIAVTGSSGAGTTTVKRAFEHIFAR--------------EGIHPAVVEGDSFHRYER-MEMKMAIAEALDAGRNFSHFGP   65 (277)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHHh--------------cCCceEEEeccccccCCc-hhHHHHHHHHhhcCCCCCCCCc
Confidence            5899999999999999999988741              111234588999876432 12111111111   13444  7


Q ss_pred             CCccHHHHHHHHHhhccCCCCCCCCCCh------------hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          184 WTFNPLLLLNCLKNLRNQGSVYAPSFDH------------GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       184 ~~~~~~~~~~~l~~l~l~~~~~~~~lS~------------G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      ++.+.+.+.+.++.++.+.....+.|++            |....-   ..+....+|||+||.+.++.-. ..++.+++
T Consensus        66 eAnd~dlL~~~l~~L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~---~~~~~p~dvIivEGLhg~~~~~-~~~lr~~~  141 (277)
T cd02029          66 EANLFDLLEELFRTYGETGRGRSRYYLHSDEEAAPFNQEPGTFTPW---EDLPEDTDLLFYEGLHGGVVTE-GYNVAQHA  141 (277)
T ss_pred             ccccHHHHHHHHHHHHcCCCcccceeeccccccccccCCCCccCCc---ccccCCCcEEEECCCCcccccc-cHHHHHhC
Confidence            7888899999999999988887787754            322211   1234688999999999665411 12555555


Q ss_pred             hc
Q 025366          252 DE  253 (254)
Q Consensus       252 ~~  253 (254)
                      |.
T Consensus       142 Dl  143 (277)
T cd02029         142 DL  143 (277)
T ss_pred             Ce
Confidence            53

PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=98.88  E-value=1.3e-09  Score=100.75  Aligned_cols=39  Identities=18%  Similarity=0.244  Sum_probs=34.9

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G  139 (254)
                      +|++||+++++|++++|+|||||||||||+  +|+..   |++|
T Consensus        21 vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~---~~sG   59 (504)
T TIGR03238        21 ILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRK---FSEG   59 (504)
T ss_pred             HHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCC---CCCC
Confidence            679999999999999999999999999999  66665   6665

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.88  E-value=6.9e-09  Score=96.99  Aligned_cols=129  Identities=19%  Similarity=0.221  Sum_probs=77.2

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      ++++.++.+.+|.+++|+||||+||||++..|++.+.   ...|        ...++ ++..|.+.     ..+.+++.+
T Consensus       245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~---~~~G--------~~kV~-LI~~Dt~R-----igA~EQLr~  307 (484)
T PRK06995        245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCV---MRHG--------ASKVA-LLTTDSYR-----IGGHEQLRI  307 (484)
T ss_pred             hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHH---HhcC--------CCeEE-EEeCCccc-----hhHHHHHHH
Confidence            3456677788899999999999999999999999874   2322        12344 46776643     567888888


Q ss_pred             HHHHcCCCCC--ccHHHHHHHHHhhccCCCCCCCCCChhhhhh-HhhhhhhcCCC-----cEEEEeCCCCCCCH
Q 025366          176 AHARRGAPWT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP-VEDDILVGLQH-----KVVIVDGNYLFLDG  241 (254)
Q Consensus       176 ~~~~~g~~~~--~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qr-v~ia~al~~~p-----~vlIlDEp~~~lD~  241 (254)
                      ....++++..  .+.......+..+.-...+.+......++.. +....+++.++     .+|+||..+.+.+.
T Consensus       308 ~AeilGVpv~~~~~~~Dl~~aL~~L~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l  381 (484)
T PRK06995        308 YGKILGVPVHAVKDAADLRLALSELRNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTL  381 (484)
T ss_pred             HHHHhCCCeeccCCchhHHHHHHhccCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHH
Confidence            7778776432  2222222333333323334444433222221 12222232222     68999998887554

>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes

Probab=98.84  E-value=4.8e-09  Score=88.89  Aligned_cols=36  Identities=28%  Similarity=0.335  Sum_probs=33.6

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +-+|++|.+++|++++|.||||+||||+++.+++..
T Consensus        19 v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~   54 (218)
T cd03286          19 VPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAV   54 (218)
T ss_pred             EEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHH
Confidence            349999999999999999999999999999999875

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>TIGR00630 uvra excinuclease ABC, A subunit

Probab=98.78  E-value=1.1e-08  Score=102.49  Aligned_cols=61  Identities=11%  Similarity=0.051  Sum_probs=52.6

Q ss_pred             HHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC--cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p--~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+..+++.   .+..+.+|||||+||+.+|++|+.+|  +++||||||++||+...+.+.++|.+
T Consensus       469 ~~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~  534 (924)
T TIGR00630       469 GFLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKR  534 (924)
T ss_pred             HhHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHH
Confidence            445566665   46788999999999999999998875  89999999999999999999998863

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK00349 uvrA excinuclease ABC subunit A; Reviewed

Probab=98.76  E-value=1.1e-08  Score=102.66  Aligned_cols=61  Identities=11%  Similarity=0.049  Sum_probs=53.5

Q ss_pred             HHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC--cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p--~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.++.++++   .+..+..||+||+||+++|++|..+|  +++||||||++||+...+.+.++|.+
T Consensus       471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~  536 (943)
T PRK00349        471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKH  536 (943)
T ss_pred             HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHH
Confidence            456666665   46789999999999999999998886  99999999999999999999998863

>PRK15453 phosphoribulokinase; Provisional

Probab=98.70  E-value=1.4e-07  Score=82.36  Aligned_cols=120  Identities=17%  Similarity=0.130  Sum_probs=72.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCC-cCCChhhcHH-HHHHHcCC-
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL-SQLDAMEDPK-EAHARRGA-  182 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~-~~l~~~e~~~-~~~~~~g~-  182 (254)
                      ++-+++|.|.+||||||+.+.|...+..              ......++..|+|+.+. ..+....... .....+.. 
T Consensus         4 k~piI~ItG~SGsGKTTva~~l~~if~~--------------~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf   69 (290)
T PRK15453          4 KHPIIAVTGSSGAGTTTVKRAFEKIFRR--------------ENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHF   69 (290)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh--------------cCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCC
Confidence            4579999999999999999999987730              11123458888887532 1111110000 00112334 


Q ss_pred             -CCCccHHHHHHHHHhhccCCCCCCCCCCh--hh---hhhHh-h---hhhhcCCCcEEEEeCCCCCC
Q 025366          183 -PWTFNPLLLLNCLKNLRNQGSVYAPSFDH--GV---GDPVE-D---DILVGLQHKVVIVDGNYLFL  239 (254)
Q Consensus       183 -~~~~~~~~~~~~l~~l~l~~~~~~~~lS~--G~---~qrv~-i---a~al~~~p~vlIlDEp~~~l  239 (254)
                       |++.+.+.+.+.++.++.+.....+.|.+  .+   ..+.. .   ...+....+|||+||.+.+.
T Consensus        70 ~PdAnd~dlL~~~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~  136 (290)
T PRK15453         70 GPEANLFDELEQLFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGV  136 (290)
T ss_pred             CCCcccHHHHHHHHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEecccccc
Confidence             67788888889999887765544444432  11   11110 0   11233568999999998874

>COG4240 Predicted kinase [General function prediction only]

Probab=98.68  E-value=8.1e-08  Score=80.63  Aligned_cols=125  Identities=32%  Similarity=0.474  Sum_probs=89.6

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcC-CChhhcHHHHHHHcCC
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ-LDAMEDPKEAHARRGA  182 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~-l~~~e~~~~~~~~~g~  182 (254)
                      -...-|+||.||-||||||+.-.|..++.    .+|        ....+. .++|++++...+ +...++..-...-+|.
T Consensus        47 ~grPli~gisGpQGSGKStls~~i~~~L~----~kg--------~ert~~-lSLDDlYlthadrl~La~q~npllq~RGl  113 (300)
T COG4240          47 RGRPLIVGISGPQGSGKSTLSALIVRLLA----AKG--------LERTAT-LSLDDLYLTHADRLRLARQVNPLLQTRGL  113 (300)
T ss_pred             cCCceEEEeecCCCCchhhHHHHHHHHHH----Hhc--------ccceEE-eehhhhhcchHHHHHHHHhcCchhcccCC
Confidence            44567999999999999999999998884    222        123454 789998764321 0011111122345788


Q ss_pred             CCCccHHHHHHHHHhhccC-CCCCCCCCCh----hhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          183 PWTFNPLLLLNCLKNLRNQ-GSVYAPSFDH----GVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       183 ~~~~~~~~~~~~l~~l~l~-~~~~~~~lS~----G~~qrv~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                      +...|....+++++.+.-+ ..+.+|.|+.    |..+|..-...+..+.+++|+|+.+.|..|
T Consensus       114 pGTHD~tlglnVLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrP  177 (300)
T COG4240         114 PGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRP  177 (300)
T ss_pred             CCCCchHHHHHHHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeeccc
Confidence            8889999899999988765 4568889986    888887666666667999999999988655

>COG3910 Predicted ATPase [General function prediction only]

Probab=98.67  E-value=1.8e-07  Score=76.47  Aligned_cols=138  Identities=14%  Similarity=0.078  Sum_probs=76.3

Q ss_pred             ccccee--eeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee-cCCCCCCCCeEEEeeCCCCCCCCcCCChhhc
Q 025366           96 PTSALA--SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS-FDSQVKPPDVATVLPMDGFHLYLSQLDAMED  172 (254)
Q Consensus        96 al~~vs--l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~-~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~  172 (254)
                      +++++.  |+++ .-|+.|+|.||+|||||+..|+-... ..+..|.. +.++         +...+       -...+.
T Consensus        25 a~r~l~~~LeF~-apIT~i~GENGsGKSTLLEaiA~~~~-~n~aGg~~n~~~~---------~~~s~-------s~l~~~   86 (233)
T COG3910          25 AFRHLEERLEFR-APITFITGENGSGKSTLLEAIAAGMG-FNAAGGGKNFKGE---------LDASH-------SALVDY   86 (233)
T ss_pred             HHHhhhhhcccc-CceEEEEcCCCccHHHHHHHHHhhcc-ccccCCCcCcCcc---------ccccc-------chHHHh
Confidence            444443  4444 46999999999999999999987653 11222211 1110         00000       000111


Q ss_pred             HHHHHH---HcCC-CCCccHHHHHHHHHhhccCC---CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHH
Q 025366          173 PKEAHA---RRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWK  245 (254)
Q Consensus       173 ~~~~~~---~~g~-~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~  245 (254)
                      ......   ..|+ ........+...++.+.-..   .......|+|+.----+.+.+ ...-+.|||||-++|.+.-+.
T Consensus        87 ~k~~~~~k~~~g~FlRAEs~yn~as~~De~~~e~~~~~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQl  165 (233)
T COG3910          87 AKLHKRKKPPIGFFLRAESFYNVASYLDEADGEANYGGRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQL  165 (233)
T ss_pred             HHHhhcCCCCcceEEehhHHHHHHHHHHhhhhhcccCCcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHH
Confidence            111100   0111 12223333344444443222   233456799998766666666 578899999999999998888


Q ss_pred             HHHHHhh
Q 025366          246 DVSSMFD  252 (254)
Q Consensus       246 ~l~~ll~  252 (254)
                      ++..++.
T Consensus       166 ella~l~  172 (233)
T COG3910         166 ELLAILR  172 (233)
T ss_pred             HHHHHHH
Confidence            8877764

>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase

Probab=98.65  E-value=1.7e-07  Score=80.95  Aligned_cols=34  Identities=26%  Similarity=0.367  Sum_probs=30.1

Q ss_pred             ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      |.=+.+.+|+.++|+|++|+|||||++.|++.+.
T Consensus         8 d~~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~   41 (249)
T cd01128           8 DLFAPIGKGQRGLIVAPPKAGKTTLLQSIANAIT   41 (249)
T ss_pred             eeecccCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            3346788999999999999999999999999884

It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=98.63  E-value=2.2e-07  Score=70.94  Aligned_cols=99  Identities=21%  Similarity=0.209  Sum_probs=59.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF  186 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~  186 (254)
                      +..+.|.||+|+||||+++.|+..+.               ...... +..+......  ...    ..   ..      
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~---------------~~~~~~-~~~~~~~~~~--~~~----~~---~~------   50 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELG---------------PPGGGV-IYIDGEDILE--EVL----DQ---LL------   50 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccC---------------CCCCCE-EEECCEEccc--cCH----HH---HH------
Confidence            67899999999999999999999984               221011 2222211100  000    00   00      


Q ss_pred             cHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH
Q 025366          187 NPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS  248 (254)
Q Consensus       187 ~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~  248 (254)
                                  ............+.+..+..+..+-...+++|++||+....+........
T Consensus        51 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~  100 (148)
T smart00382       51 ------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLL  100 (148)
T ss_pred             ------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHH
Confidence                        11112223345566667766666666668999999999999987665443

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>PRK13695 putative NTPase; Provisional

Probab=98.59  E-value=2.4e-08  Score=81.47  Aligned_cols=47  Identities=13%  Similarity=0.037  Sum_probs=37.5

Q ss_pred             CCCCChhhhhhHhhhhhhcCCCcEEEEeC--CCCCCCHHHHHHHHHHhh
Q 025366          206 APSFDHGVGDPVEDDILVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       206 ~~~lS~G~~qrv~ia~al~~~p~vlIlDE--p~~~lD~~~~~~l~~ll~  252 (254)
                      ...+|++++-+..+.+..+.+|++||+||  |+..+|+...+.+.++++
T Consensus        76 ~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~~  124 (174)
T PRK13695         76 VVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVLD  124 (174)
T ss_pred             EEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHHh
Confidence            34688999999988888888999999999  666777776677666653

>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs

Probab=98.58  E-value=5e-07  Score=73.93  Aligned_cols=50  Identities=10%  Similarity=0.070  Sum_probs=36.6

Q ss_pred             CCCCCCCChhhhh------hHhhhhhhcCCCcEEEEeCCCCCCC---HHHHHHHHHHhh
Q 025366          203 SVYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLD---GGVWKDVSSMFD  252 (254)
Q Consensus       203 ~~~~~~lS~G~~q------rv~ia~al~~~p~vlIlDEp~~~lD---~~~~~~l~~ll~  252 (254)
                      +..+..+|+|+++      ......+...+|+++|+|||++.+|   ...+..+.+++.
T Consensus        66 d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~  124 (187)
T cd01124          66 DADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLF  124 (187)
T ss_pred             ecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHH
Confidence            4555678899887      4444444567999999999999999   666666666553

A related protein is found in archaea.

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.54  E-value=2.1e-07  Score=76.86  Aligned_cols=40  Identities=25%  Similarity=0.365  Sum_probs=35.5

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      .-+.+.++.|+.++|+||||||||||++.|+++++   |+.|.
T Consensus        16 ~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~---~~~~~   55 (186)
T cd01130          16 AYLWLAVEARKNILISGGTGSGKTTLLNALLAFIP---PDERI   55 (186)
T ss_pred             HHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcC---CCCCE
Confidence            44567789999999999999999999999999996   77777

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK07667 uridine kinase; Provisional

Probab=98.50  E-value=5.1e-07  Score=75.00  Aligned_cols=107  Identities=16%  Similarity=0.298  Sum_probs=65.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC--
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP--  183 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~--  183 (254)
                      ..-+|||.|++||||||+.+.|...++    ..|         .. ..++..|+++....     .     +...+..  
T Consensus        16 ~~~iIgI~G~~gsGKStla~~L~~~l~----~~~---------~~-~~~i~~Dd~~~~~~-----~-----~~~~~~~~~   71 (193)
T PRK07667         16 NRFILGIDGLSRSGKTTFVANLKENMK----QEG---------IP-FHIFHIDDYIVERN-----K-----RYHTGFEEW   71 (193)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH----hCC---------Cc-EEEEEcCcccchhh-----h-----HHhcCCCch
Confidence            346999999999999999999999884    111         12 23478888754221     0     0111111  


Q ss_pred             -----CCccHHHHH-HHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC
Q 025366          184 -----WTFNPLLLL-NCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (254)
Q Consensus       184 -----~~~~~~~~~-~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~  237 (254)
                           ..++...+. .++..+..+.....|.|+.-...+..-... +..++++|+|+|++
T Consensus        72 ~~~~~~~~d~~~L~~~v~~~L~~~~~i~~P~~d~~~~~~~~~~~~-~~~~~vvIvEG~~l  130 (193)
T PRK07667         72 YEYYYLQWDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKKVQ-IPIVGVIVIEGVFL  130 (193)
T ss_pred             hhhhhhhhhHHHHHHHHHHhhcCCCeEEEeeecccccccccccee-cCCCCEEEEEehhh
Confidence                 112333333 455666666667778888766554432111 34569999999994

>PRK06067 flagellar accessory protein FlaH; Validated

Probab=98.50  E-value=4.1e-07  Score=77.69  Aligned_cols=118  Identities=14%  Similarity=0.077  Sum_probs=65.2

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHH-HhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVV-RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~-Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g  181 (254)
                      -+++|.++.|.|++|+|||||+..++ +...               ....+.++..+.        +..+.. .....++
T Consensus        21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~---------------~g~~~~y~~~e~--------~~~~~~-~~~~~~g   76 (234)
T PRK06067         21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK---------------QGKKVYVITTEN--------TSKSYL-KQMESVK   76 (234)
T ss_pred             CCcCCcEEEEECCCCCChHHHHHHHHHHHHh---------------CCCEEEEEEcCC--------CHHHHH-HHHHHCC
Confidence            47889999999999999999998874 3332               233344454432        111111 1122334


Q ss_pred             CCCCccHHHH--HHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcC--CCcEEEEeCCCCCCCHHHHHHHHH
Q 025366          182 APWTFNPLLL--LNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGL--QHKVVIVDGNYLFLDGGVWKDVSS  249 (254)
Q Consensus       182 ~~~~~~~~~~--~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~--~p~vlIlDEp~~~lD~~~~~~l~~  249 (254)
                      +.    ....  ...+..+... .......+.++.+.+.....++.  +|+++++|||++.+|......+.+
T Consensus        77 ~~----~~~~~~~g~l~i~~~~-~~~~~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~  143 (234)
T PRK06067         77 ID----ISDFFLWGYLRIFPLN-TEGFEWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILN  143 (234)
T ss_pred             CC----hhHHHhCCCceEEecc-ccccccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHH
Confidence            21    1111  0001001110 01122345778888888877765  999999999997655433333333

>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A

Probab=98.49  E-value=1.5e-07  Score=79.07  Aligned_cols=48  Identities=13%  Similarity=0.106  Sum_probs=38.0

Q ss_pred             CCCCChhhhhhHhhhhhhcCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          206 APSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       206 ~~~lS~G~~qrv~ia~al~~~p---~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ...+|.|+++.+.++..+...+   .++++|||-++|.|..++.+.++|.+
T Consensus       234 ~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~  284 (303)
T PF13304_consen  234 LSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKE  284 (303)
T ss_dssp             GS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHH
T ss_pred             eccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHh
Confidence            3456999999988877774444   89999999999999999999998853

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=98.47  E-value=3.3e-07  Score=81.66  Aligned_cols=33  Identities=24%  Similarity=0.419  Sum_probs=30.6

Q ss_pred             eeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       100 vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++.+..|+.++|+|++|||||||++.|+++++
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~  169 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIP  169 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            567889999999999999999999999999984

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=98.46  E-value=6.7e-07  Score=70.75  Aligned_cols=24  Identities=38%  Similarity=0.659  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++.|.|+||+||||+++.+++...
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~   24 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIA   24 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999884

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=98.46  E-value=2.7e-07  Score=62.22  Aligned_cols=34  Identities=24%  Similarity=0.406  Sum_probs=28.7

Q ss_pred             cceeeeeCC-CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           98 SALASNVNV-KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        98 ~~vsl~i~~-GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++..+++.+ |+++.|.|+||||||||+..|.-++
T Consensus        13 ~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L   47 (62)
T PF13555_consen   13 DGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVL   47 (62)
T ss_pred             CCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            445666765 6799999999999999999998877

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.46  E-value=7e-07  Score=82.40  Aligned_cols=95  Identities=21%  Similarity=0.263  Sum_probs=57.7

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~  183 (254)
                      +++|++++|+||||+||||+++.|++...   -..         .+..+.++..|.+.+     ...+.........|++
T Consensus       188 ~~~g~vi~lvGpnG~GKTTtlakLA~~~~---~~~---------~~~~v~~i~~d~~ri-----galEQL~~~a~ilGvp  250 (420)
T PRK14721        188 IEQGGVYALIGPTGVGKTTTTAKLAARAV---IRH---------GADKVALLTTDSYRI-----GGHEQLRIYGKLLGVS  250 (420)
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHHHHHH---Hhc---------CCCeEEEEecCCcch-----hHHHHHHHHHHHcCCc
Confidence            46799999999999999999999998641   000         122344577777643     4556666666777765


Q ss_pred             CC--ccHHHHHHHHHhhccCCCCCCCCCChhhhhhH
Q 025366          184 WT--FNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV  217 (254)
Q Consensus       184 ~~--~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv  217 (254)
                      ..  .+.......+..+.-...+.+..  .|+.+|.
T Consensus       251 ~~~v~~~~dl~~al~~l~~~d~VLIDT--aGrsqrd  284 (420)
T PRK14721        251 VRSIKDIADLQLMLHELRGKHMVLIDT--VGMSQRD  284 (420)
T ss_pred             eecCCCHHHHHHHHHHhcCCCEEEecC--CCCCcch
Confidence            32  33334444555444333333333  3666653

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=98.45  E-value=2.5e-06  Score=73.91  Aligned_cols=37  Identities=24%  Similarity=0.497  Sum_probs=31.3

Q ss_pred             cccceeeeeCCCe-EEEEECCCCCcHHHHHHHHHHhhc
Q 025366           96 PTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        96 al~~vsl~i~~Ge-ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++..++..++++. ++.|.||+|+|||||++.+...+.
T Consensus        31 ~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        31 AMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             HHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            5577777777655 899999999999999999998873

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PRK06002 fliI flagellum-specific ATP synthase; Validated

Probab=98.41  E-value=3.4e-07  Score=84.80  Aligned_cols=60  Identities=17%  Similarity=0.160  Sum_probs=50.9

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      ..+.++.+++++.|...   +.+++.++ .+.+|++++|+|+||||||||+++|+++..   |+.|.
T Consensus       136 ~p~~~~r~~v~~~l~TG---i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~---pd~gv  195 (450)
T PRK06002        136 APPAMTRARVETGLRTG---VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADA---FDTVV  195 (450)
T ss_pred             CCCCeEeecceEEcCCC---cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCC---CCeee
Confidence            34578999999999764   23567775 899999999999999999999999999986   77776

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.41  E-value=2e-06  Score=78.34  Aligned_cols=71  Identities=23%  Similarity=0.322  Sum_probs=48.1

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      ++++.++.+++|.+++|+||||+||||++..|++...   ...|        ...++ ++..|.+.     ....+.+..
T Consensus       126 ~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~~---~~~G--------~~~V~-lit~D~~R-----~ga~EqL~~  188 (374)
T PRK14722        126 VLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARCV---MRFG--------ASKVA-LLTTDSYR-----IGGHEQLRI  188 (374)
T ss_pred             hhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHHH---HhcC--------CCeEE-EEeccccc-----ccHHHHHHH
Confidence            4567778899999999999999999999999998752   1111        12233 46666653     245566655


Q ss_pred             HHHHcCCC
Q 025366          176 AHARRGAP  183 (254)
Q Consensus       176 ~~~~~g~~  183 (254)
                      .....+++
T Consensus       189 ~a~~~gv~  196 (374)
T PRK14722        189 FGKILGVP  196 (374)
T ss_pred             HHHHcCCc
Confidence            55556653

>PRK06696 uridine kinase; Validated

Probab=98.36  E-value=1.7e-06  Score=73.51  Aligned_cols=109  Identities=27%  Similarity=0.357  Sum_probs=60.1

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC----
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----  181 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g----  181 (254)
                      ..-+|||.|++|||||||.+.|+..++    ..|          .....+.+|+|+....          .+...+    
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~----~~g----------~~v~~~~~Ddf~~~~~----------~r~~~~~~~~   76 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIK----KRG----------RPVIRASIDDFHNPRV----------IRYRRGRESA   76 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH----HcC----------CeEEEeccccccCCHH----------HHHHcCCCCh
Confidence            456999999999999999999999884    111          1223367898875321          111111    


Q ss_pred             --C-CCCccHHHHHHHHHh-hccCC--CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCC
Q 025366          182 --A-PWTFNPLLLLNCLKN-LRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLF  238 (254)
Q Consensus       182 --~-~~~~~~~~~~~~l~~-l~l~~--~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~  238 (254)
                        + ...++...+.+.+-. +.-..  ....+.++.-...+..-....+...+++|+|+|+..
T Consensus        77 ~g~~~~~~d~~~L~~~l~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~  139 (223)
T PRK06696         77 EGYYEDAYDYTALRRLLLDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLL  139 (223)
T ss_pred             hhcCccccCHHHHHHHHHhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHh
Confidence              1 134455555444333 22111  222333444333333212223456789999999864

>cd01131 PilT Pilus retraction ATPase PilT

Probab=98.34  E-value=1.8e-06  Score=72.03  Aligned_cols=24  Identities=46%  Similarity=0.708  Sum_probs=22.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++.|+||+||||||+++.|.+.+.
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~   26 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYIN   26 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhh
Confidence            688999999999999999998884

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR02903 spore_lon_C ATP-dependent protease, Lon family

Probab=98.32  E-value=4.1e-06  Score=81.26  Aligned_cols=116  Identities=21%  Similarity=0.208  Sum_probs=64.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT  185 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~  185 (254)
                      ....++|.||||+|||||+++|.+...   +..|+.+     ..... ++.+++..+..   ...+   .....++....
T Consensus       174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~---~~~~~~~-----~~~~~-fv~i~~~~l~~---d~~~---i~~~llg~~~~  238 (615)
T TIGR02903       174 FPQHIILYGPPGVGKTTAARLALEEAK---KLKHTPF-----AEDAP-FVEVDGTTLRW---DPRE---VTNPLLGSVHD  238 (615)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHhhh---hccCCcc-----cCCCC-eEEEechhccC---CHHH---HhHHhcCCccH
Confidence            356799999999999999999999874   3333200     01112 35555533210   1000   00111221111


Q ss_pred             ccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          186 FNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       186 ~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .........++..++.  ....+..+|+|                +|++|| +..||+..+..+.+++++
T Consensus       239 ~~~~~a~~~l~~~gl~~~~~g~v~~asgG----------------vL~LDE-i~~Ld~~~Q~~Ll~~Le~  291 (615)
T TIGR02903       239 PIYQGARRDLAETGVPEPKTGLVTDAHGG----------------VLFIDE-IGELDPLLQNKLLKVLED  291 (615)
T ss_pred             HHHHHHHHHHHHcCCCchhcCchhhcCCC----------------eEEEec-cccCCHHHHHHHHHHHhh
Confidence            1111222334444432  22334455665                999999 789999999999999865

Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.

>TIGR00767 rho transcription termination factor Rho

Probab=98.29  E-value=1.1e-06  Score=80.22  Aligned_cols=54  Identities=22%  Similarity=0.284  Sum_probs=47.3

Q ss_pred             ceEEEecceeecccccceecccc-----------ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           76 PVVEARCMDEVYDALAQRLLPTS-----------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~-----------~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..+++++|+..|.+.  + ++|+           |+.+.+.+|+.++|+||+|+|||||++.|+..+.
T Consensus       129 ~ri~Fe~LTf~YP~e--r-~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~  193 (415)
T TIGR00767       129 NRVLFENLTPLYPNE--R-LRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT  193 (415)
T ss_pred             CCeEEEEeeecCCCc--c-ceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence            468999999999863  2 2565           9999999999999999999999999999999874

Members of this family differ in the specificity of RNA binding.

>PRK07196 fliI flagellum-specific ATP synthase; Validated

Probab=98.24  E-value=8e-07  Score=82.24  Aligned_cols=37  Identities=27%  Similarity=0.350  Sum_probs=34.9

Q ss_pred             ccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           95 LPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        95 lal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+++++ |.+.+|++++|+|+||+|||||+++|+|+.+
T Consensus       144 ~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~  180 (434)
T PRK07196        144 NAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQ  180 (434)
T ss_pred             eeccce-EeEecceEEEEECCCCCCccHHHHHHhcccC
Confidence            377999 9999999999999999999999999999885

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=98.23  E-value=9.8e-07  Score=72.34  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=25.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +|++++|+|+||||||||+++|++++.
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~   28 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFS   28 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcC
Confidence            589999999999999999999999984

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.23  E-value=3.4e-06  Score=82.77  Aligned_cols=87  Identities=23%  Similarity=0.292  Sum_probs=57.2

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      ++++.++.+++|++++|+||||+||||++..|++.+.   ...|         .....++..|.+.     ....+.+..
T Consensus       174 il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~---~~~G---------~kkV~lit~Dt~R-----igA~eQL~~  236 (767)
T PRK14723        174 VLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCV---AREG---------ADQLALLTTDSFR-----IGALEQLRI  236 (767)
T ss_pred             hccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHH---HHcC---------CCeEEEecCcccc-----hHHHHHHHH
Confidence            4567788888899999999999999999999999873   2222         1122335665542     235566666


Q ss_pred             HHHHcCCCC--CccHHHHHHHHHhhc
Q 025366          176 AHARRGAPW--TFNPLLLLNCLKNLR  199 (254)
Q Consensus       176 ~~~~~g~~~--~~~~~~~~~~l~~l~  199 (254)
                      .....+++.  ..+...+.+.++.+.
T Consensus       237 ~a~~~gvpv~~~~~~~~l~~al~~~~  262 (767)
T PRK14723        237 YGRILGVPVHAVKDAADLRFALAALG  262 (767)
T ss_pred             HHHhCCCCccccCCHHHHHHHHHHhc
Confidence            666777632  234455566666554

>PRK09862 putative ATP-dependent protease; Provisional

Probab=98.23  E-value=9.6e-07  Score=83.33  Aligned_cols=54  Identities=22%  Similarity=0.300  Sum_probs=48.2

Q ss_pred             EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus        80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      +.++++.|+...    +++++++.+..|+.++|+||||+|||||++.|.|+++   |.+|+
T Consensus       187 ~~d~~~v~Gq~~----~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllp---p~~g~  240 (506)
T PRK09862        187 QHDLSDVIGQEQ----GKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLP---DLSNE  240 (506)
T ss_pred             ccCeEEEECcHH----HHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCC---CCCCc
Confidence            358888998743    6699999999999999999999999999999999997   88876

>PHA02562 46 endonuclease subunit; Provisional

Probab=98.22  E-value=1.1e-06  Score=84.16  Aligned_cols=49  Identities=22%  Similarity=0.310  Sum_probs=43.8

Q ss_pred             CCCCCChhhhhhHhhhhhhc----------CCCcEEEEeCCC-CCCCHHHHHHHHHHhhc
Q 025366          205 YAPSFDHGVGDPVEDDILVG----------LQHKVVIVDGNY-LFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       205 ~~~~lS~G~~qrv~ia~al~----------~~p~vlIlDEp~-~~lD~~~~~~l~~ll~~  253 (254)
                      .+..||+||+||+++|++++          .+|+++|+|||| ++||+..+..+.++|.+
T Consensus       465 ~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~  524 (562)
T PHA02562        465 SYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDS  524 (562)
T ss_pred             ChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHh
Confidence            44689999999999999886          589999999998 78999999999998864

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.21  E-value=1.1e-05  Score=72.13  Aligned_cols=28  Identities=18%  Similarity=0.375  Sum_probs=26.3

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+|++++|+||||+||||++..|++.+.
T Consensus       112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~  139 (318)
T PRK10416        112 KKPFVILVVGVNGVGKTTTIGKLAHKYK  139 (318)
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHHH
Confidence            5689999999999999999999999984

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=98.20  E-value=1e-06  Score=72.66  Aligned_cols=26  Identities=35%  Similarity=0.616  Sum_probs=24.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      |++++|+||||||||||+++|++...
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~   27 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQ   27 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            78999999999999999999999874

>PRK08233 hypothetical protein; Provisional

Probab=98.18  E-value=1.1e-05  Score=65.69  Aligned_cols=26  Identities=27%  Similarity=0.553  Sum_probs=24.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++.+|+|.|++|||||||++.|+..+
T Consensus         2 ~~~iI~I~G~~GsGKtTla~~L~~~l   27 (182)
T PRK08233          2 KTKIITIAAVSGGGKTTLTERLTHKL   27 (182)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhC
Confidence            35799999999999999999999987

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.18  E-value=2.7e-05  Score=68.04  Aligned_cols=36  Identities=28%  Similarity=0.494  Sum_probs=29.9

Q ss_pred             ccceeeeeC-------CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           97 TSALASNVN-------VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        97 l~~vsl~i~-------~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++++++.++       +|++++++|+||+||||+++.|++.+.
T Consensus        58 ~~~l~~~~~~~~~~~~~~~~i~~~G~~g~GKTtl~~~l~~~l~  100 (270)
T PRK06731         58 LEDMSSHFNTENVFEKEVQTIALIGPTGVGKTTTLAKMAWQFH  100 (270)
T ss_pred             hcccEEeeCCcccccCCCCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            466666665       458999999999999999999999873

>cd01125 repA Hexameric Replicative Helicase RepA

Probab=98.16  E-value=7.2e-06  Score=70.26  Aligned_cols=25  Identities=28%  Similarity=0.426  Sum_probs=21.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |.+..|+||.|+|||||+-.++--+
T Consensus         1 g~~~ll~g~~G~GKS~lal~la~~v   25 (239)
T cd01125           1 GYVSALVAPGGTGKSSLLLVLALAM   25 (239)
T ss_pred             CceeEEEcCCCCCHHHHHHHHHHHH
Confidence            6788899999999999998887554

RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.

>PRK07594 type III secretion system ATPase SsaN; Validated

Probab=98.15  E-value=2.2e-06  Score=79.30  Aligned_cols=58  Identities=19%  Similarity=0.269  Sum_probs=48.6

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      +.++.+.++..|...   +.+++++ |.+.+|+.++|+|+||+|||||+++|+++..   ++.|.
T Consensus       128 ~~~~r~~v~~~l~tG---i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~---~d~~v  185 (433)
T PRK07594        128 PAMVRQPITQPLMTG---IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPD---ADSNV  185 (433)
T ss_pred             CceeccCHhheeCCC---ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCC---CCEEE
Confidence            457777888888543   2367999 9999999999999999999999999999886   67665

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=98.13  E-value=1.5e-05  Score=72.17  Aligned_cols=29  Identities=34%  Similarity=0.562  Sum_probs=25.7

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..++.++.|.||+||||||+++.|.+.+.
T Consensus       119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~  147 (343)
T TIGR01420       119 ERPRGLILVTGPTGSGKSTTLASMIDYIN  147 (343)
T ss_pred             hhcCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence            35678999999999999999999999874

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>TIGR00618 sbcc exonuclease SbcC

Probab=98.13  E-value=2.6e-06  Score=87.44  Aligned_cols=52  Identities=12%  Similarity=0.120  Sum_probs=45.9

Q ss_pred             CCCCCCCCChhhhhhHhhhhhhcC----------CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          202 GSVYAPSFDHGVGDPVEDDILVGL----------QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       202 ~~~~~~~lS~G~~qrv~ia~al~~----------~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ....+..|||||++|+.+|++|+.          +|++||+||||++||+.....+.++|+.
T Consensus       944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~ 1005 (1042)
T TIGR00618       944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDA 1005 (1042)
T ss_pred             CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHH
Confidence            456778999999999999999975          7999999999999999999999888853

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein

Probab=98.12  E-value=3.2e-06  Score=75.64  Aligned_cols=51  Identities=25%  Similarity=0.315  Sum_probs=41.3

Q ss_pred             ceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366           83 MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus        83 l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      +...|...   +.+++++ +.+.+|++++|+|+||+|||||+++|+++..   ++.|.
T Consensus        49 ~~~~l~tG---i~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~---~~~~v   99 (326)
T cd01136          49 IDEVLPTG---VRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTT---ADVNV   99 (326)
T ss_pred             ceeEcCCC---cEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCC---CCEEE
Confidence            44455442   2266888 9999999999999999999999999999986   66554

This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.

>PRK10246 exonuclease subunit SbcC; Provisional

Probab=98.12  E-value=2.7e-06  Score=87.27  Aligned_cols=51  Identities=14%  Similarity=0.141  Sum_probs=45.4

Q ss_pred             CCCCCCCCChhhhhhHhhhhhhcC--------CCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          202 GSVYAPSFDHGVGDPVEDDILVGL--------QHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       202 ~~~~~~~lS~G~~qrv~ia~al~~--------~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ....+..|||||+++++++++|+.        +|++||+||||.+||+.....++++|.
T Consensus       943 ~~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~ 1001 (1047)
T PRK10246        943 AVRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALD 1001 (1047)
T ss_pred             CCCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHH
Confidence            457788999999999999999975        899999999999999999999988875

>TIGR00634 recN DNA repair protein RecN

Probab=98.10  E-value=3.6e-06  Score=81.01  Aligned_cols=46  Identities=15%  Similarity=0.070  Sum_probs=41.8

Q ss_pred             CCChhhhhhHhhhhhhcCC----CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          208 SFDHGVGDPVEDDILVGLQ----HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       208 ~lS~G~~qrv~ia~al~~~----p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .||+||++|+++|++++..    |++||+|||++++|...+..+.+++.+
T Consensus       440 ~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~  489 (563)
T TIGR00634       440 VASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQ  489 (563)
T ss_pred             hcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999764    699999999999999999999988763

All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.

>PRK00300 gmk guanylate kinase; Provisional

Probab=98.10  E-value=2.7e-06  Score=70.96  Aligned_cols=27  Identities=41%  Similarity=0.614  Sum_probs=25.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++|++++|+||+|||||||++.|++.+
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~   29 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERD   29 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            579999999999999999999999987

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=98.09  E-value=1.6e-05  Score=61.05  Aligned_cols=26  Identities=38%  Similarity=0.640  Sum_probs=24.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+..+.|.||+|+|||||++.++..+
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~   43 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANEL   43 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            47889999999999999999999987

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PRK10869 recombination and repair protein; Provisional

Probab=98.07  E-value=4.1e-06  Score=80.30  Aligned_cols=46  Identities=15%  Similarity=0.062  Sum_probs=42.0

Q ss_pred             CCChhhhhhHhhhhhhcC----CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          208 SFDHGVGDPVEDDILVGL----QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       208 ~lS~G~~qrv~ia~al~~----~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+||||++|+++|++++.    +|+++|+|||++++|......+.+++.+
T Consensus       430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~  479 (553)
T PRK10869        430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQ  479 (553)
T ss_pred             hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            479999999999999986    5899999999999999999999988864

>PRK07721 fliI flagellum-specific ATP synthase; Validated

Probab=98.06  E-value=3.6e-06  Score=78.27  Aligned_cols=41  Identities=27%  Similarity=0.348  Sum_probs=37.2

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      +++++ |.+.+|++++|+|+||+|||||+++|+++..   ++.|.
T Consensus       148 vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~---~~~gv  188 (438)
T PRK07721        148 AIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTS---ADLNV  188 (438)
T ss_pred             hhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccC---CCeEE
Confidence            66999 9999999999999999999999999999985   66554

>PRK08149 ATP synthase SpaL; Validated

Probab=98.05  E-value=4.8e-06  Score=77.00  Aligned_cols=36  Identities=19%  Similarity=0.375  Sum_probs=34.1

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++++ +.+.+|++++|+|+||+|||||+++|+++..
T Consensus       141 aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~  176 (428)
T PRK08149        141 AIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSE  176 (428)
T ss_pred             EEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCC
Confidence            67999 9999999999999999999999999999875

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=98.02  E-value=4.5e-06  Score=68.12  Aligned_cols=26  Identities=35%  Similarity=0.567  Sum_probs=24.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      |++++|+||||||||||++.|++.+.
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            57899999999999999999999873

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>KOG2878 consensus Predicted kinase [General function prediction only]

Probab=98.02  E-value=8.5e-06  Score=67.39  Aligned_cols=119  Identities=27%  Similarity=0.341  Sum_probs=76.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH--------HHHH
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE--------AHAR  179 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~--------~~~~  179 (254)
                      -++++.||-|||||||.-.|---+.+  ...|        ...++. +++|+|++.     ..+..+.        ..+.
T Consensus        32 l~igfSgPQGsGKstl~~ald~~lt~--Ky~~--------E~s~~~-~SvDDFYLT-----he~Q~eL~k~npnN~Llq~   95 (282)
T KOG2878|consen   32 LVIGFSGPQGSGKSTLVFALDYKLTK--KYIQ--------EYSSAT-ISVDDFYLT-----HEGQAELRKKNPNNALLQY   95 (282)
T ss_pred             EEEEecCCCCCCceeehhhhHHHHHH--Hhcc--------ccceEE-EEecceeee-----chhHHHHHhhCCCChhhcc
Confidence            48999999999999998777654420  1111        124455 899998854     3333222        2334


Q ss_pred             cCCCCCccHHHHHHHHHhhcc----CCCCCCCCCC----hhhhhhHhhhhhhc-CCCcEEEEeCCCCCCCHH
Q 025366          180 RGAPWTFNPLLLLNCLKNLRN----QGSVYAPSFD----HGVGDPVEDDILVG-LQHKVVIVDGNYLFLDGG  242 (254)
Q Consensus       180 ~g~~~~~~~~~~~~~l~~l~l----~~~~~~~~lS----~G~~qrv~ia~al~-~~p~vlIlDEp~~~lD~~  242 (254)
                      +|.+...+...+.++++.+--    +..+.+|.|+    +|...|.--..-.- ..-+++|+++.+.|..|.
T Consensus        96 RGlaGtHD~kll~evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~Pl  167 (282)
T KOG2878|consen   96 RGLAGTHDLKLLVEVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKPL  167 (282)
T ss_pred             CCCCCcccHHHHHHHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEeccccccccc
Confidence            667777787777777775532    2346677665    46667766555442 345899999999987664

>TIGR00606 rad50 rad50

Probab=98.02  E-value=5.9e-06  Score=86.65  Aligned_cols=19  Identities=42%  Similarity=0.690  Sum_probs=12.4

Q ss_pred             EEEEECCCCCcHHHHHHHH
Q 025366          109 IVGLAGPPGAGKSTLAAEV  127 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L  127 (254)
                      +++|+|||||||||++.+|
T Consensus        30 ~~~I~G~NGaGKTTil~ai   48 (1311)
T TIGR00606        30 LTILVGPNGAGKTTIIECL   48 (1311)
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            6666666666666666666

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK05399 DNA mismatch repair protein MutS; Provisional

Probab=98.01  E-value=8.1e-06  Score=81.99  Aligned_cols=33  Identities=24%  Similarity=0.344  Sum_probs=29.0

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|+++. ..+.++.|.|||.+||||++|.++-..
T Consensus       599 nd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~  631 (854)
T PRK05399        599 NDCDLD-EERRLLLITGPNMAGKSTYMRQVALIV  631 (854)
T ss_pred             cceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHH
Confidence            778877 667899999999999999999998764

>TIGR03263 guanyl_kin guanylate kinase

Probab=98.01  E-value=4.1e-06  Score=68.30  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=23.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |++++|+||||||||||++.|++..
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~   25 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEED   25 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccC
Confidence            6899999999999999999999976

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
3c8u_A	208	Crystal Structure Of Putative Fructose Transport Sy		4e-12
2ga8_A	359	Crystal Structure Of Yfh7 From Saccharomyces Cerevi		2e-10

>pdb|3C8U|A Chain A, Crystal Structure Of Putative Fructose Transport System Kinase (Yp_612366.1) From Silicibacter Sp. Tm1040 At 1.95 A Resolution Length = 208

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 18/146 (12%)
Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
           + +V L+G PG+GKSTL+  +           A++  +Q  P   A V+P DGFHL    
Sbjct: 22  RQLVALSGAPGSGKSTLSNPL-----------AAALSAQGLP---AEVVPXDGFHLD--- 64
Query: 167 LDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQGSVYAPSFDHGVGDPVEDDILVGLQ 226
            + + +P+    R+GAP TF              Q  V  P FD      +     VG +
Sbjct: 65  -NRLLEPRGLLPRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPE 123
Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFD 252
            +V I++GNYL  D   W+D+++++D
Sbjct: 124 CRVAIIEGNYLLFDAPGWRDLTAIWD 149

>pdb|2GA8|A Chain A, Crystal Structure Of Yfh7 From Saccharomyces Cerevisiae: A Putative P-Loop Containing Kinase With A Circular Permutation. Length = 359

Iteration: 1
 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 51/127 (40%), Gaps = 29/127 (22%)
Query: 150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFXXXXXXXXXXXXXXQG------- 202
           ++A ++PMDGFHL    LD  +DP+ AH RRG+P TF                       
Sbjct: 154 NIAQIVPMDGFHLSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLXKVSSH 213
Query: 203 ----------------------SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD 240
                                  ++ P F+H + DP  D   +    ++VI++G YL  D
Sbjct: 214 HKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYD 273
Query: 241 GGVWKDV 247
              WK +
Sbjct: 274 QENWKKI 280

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	9e-47
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	1e-43
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	4e-07
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	1e-27
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	8e-26
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	9e-26
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	1e-17
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	2e-12
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	2e-12
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	2e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	2e-10
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	6e-10
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	2e-09
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	5e-05
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	5e-05
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	7e-05
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	9e-05
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	3e-04

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208

 Score =  153 bits (389), Expect = 9e-47
 Identities = 50/169 (29%), Positives = 77/169 (45%), Gaps = 20/169 (11%)

Query: 86  VYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQ 145
              AL Q +L    L      + +V L+G PG+GKSTL+  +   ++             
Sbjct: 3   TLAALCQGVL--ERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLP-------- 52

Query: 146 VKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVY 205
                 A V+PMDGFHL    L+    P+    R+GAP TF+          L++Q  V 
Sbjct: 53  ------AEVVPMDGFHLDNRLLE----PRGLLPRKGAPETFDFEGFQRLCHALKHQERVI 102

Query: 206 APSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
            P FD      +     VG + +V I++GNYL  D   W+D+++++D  
Sbjct: 103 YPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVS 151

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359

 Score =  150 bits (379), Expect = 1e-43
 Identities = 50/241 (20%), Positives = 82/241 (34%), Gaps = 40/241 (16%)

Query: 43  RRNTNAQPVFGKTRSLVQNKTSLKVLCSQQREIPVVEARCMDEVYDALAQRLLPTSALAS 102
                 +        +    +   +  ++  E+   +    D V D   Q   P    A 
Sbjct: 58  EHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGLFKDHVEDVNFQ---PVKYSAL 114

Query: 103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHL 162
             N +    +    G   +   A V   +N     + S         ++A ++PMDGFHL
Sbjct: 115 TSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDS--------INIAQIVPMDGFHL 166

Query: 163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--------------------- 201
               LD  +DP+ AH RRG+P TF+    L   K L                        
Sbjct: 167 SRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKL 226

Query: 202 --------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE 253
                     ++ P F+H + DP  D   +    ++VI++G YL  D   WK +     +
Sbjct: 227 SKTFSQTIPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLAD 286

Query: 254 K 254
            
Sbjct: 287 T 287

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* Length = 359

 Score = 49.3 bits (117), Expect = 4e-07
 Identities = 22/89 (24%), Positives = 38/89 (42%), Gaps = 3/89 (3%)

Query: 87  YDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQV 146
              LA  +L         N +  V L G PG+GKST+A E+ + IN+ +    S   + +
Sbjct: 4   THKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVI 63

Query: 147 KP--PDVATVLPMDGFH-LYLSQLDAMED 172
           +        V  +D    L  +++  M +
Sbjct: 64  EVNDRLKPMVNLVDSLKTLQPNKVAEMIE 92

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* Length = 308

 Score =  106 bits (267), Expect = 1e-27
 Identities = 31/178 (17%), Positives = 63/178 (35%), Gaps = 26/178 (14%)

Query: 87  YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           Y +   R           N +    I+ +AG    GKST A  +   +++    +     
Sbjct: 57  YISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR---- 112

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG 202
                     ++  DGF      L      +    ++G P +++   L+  + +L++   
Sbjct: 113 --------VELITTDGFLHPNQVLKE----RGLMKKKGFPESYDMHRLVKFVSDLKSGVP 160

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD------GGVWKDVSSMFDEK 254
           +V AP + H + D + D     +Q  ++I++G  +               VS   D  
Sbjct: 161 NVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFS 218

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* Length = 312

 Score =  101 bits (254), Expect = 8e-26
 Identities = 32/164 (19%), Positives = 60/164 (36%), Gaps = 18/164 (10%)

Query: 92  QRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDV 151
              L       +  V  I+G+AG    GKST A  +   + +                  
Sbjct: 75  AEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPR------------ 122

Query: 152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QGSVYAPSFD 210
             ++  DGF    ++L      +    R+G P ++N   L+  + ++++      AP + 
Sbjct: 123 VDLVTTDGFLYPNAELQR----RNLMHRKGFPESYNRRALMRFVTSVKSGSDYACAPVYS 178

Query: 211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
           H   D +     V     ++I++G  +   G     VS +FD  
Sbjct: 179 HLHYDIIPGAEQVVRHPDILILEGLNVLQTGP-TLMVSDLFDFS 221

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} Length = 321

 Score =  101 bits (254), Expect = 9e-26
 Identities = 37/178 (20%), Positives = 65/178 (36%), Gaps = 26/178 (14%)

Query: 87  YDALAQRLLPTSALASNVNVKH---IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFD 143
           Y    Q L   +             I+G+AG    GKST +  +   +++          
Sbjct: 69  YVTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN---- 124

Query: 144 SQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN-QG 202
                     V+  DGF    ++L+     +    R+G P +++   LL  L  +++ Q 
Sbjct: 125 --------VEVITTDGFLYSNAKLEK----QGLMKRKGFPESYDMPSLLRVLNAIKSGQR 172

Query: 203 SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG------GVWKDVSSMFDEK 254
           +V  P + H   D V     +  Q  +VI++G  +   G       +   VS  FD  
Sbjct: 173 NVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFS 230

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201

 Score = 77.4 bits (191), Expect = 1e-17
 Identities = 26/175 (14%), Positives = 62/175 (35%), Gaps = 33/175 (18%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           + +  D L + +L     A     + ++G+ G   +GK+TLA ++ + + +         
Sbjct: 3   LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS----- 52

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQL--DAMEDPKEAHARRGAPWTFN-PLLLLNCLKNLR 199
                      V  MD   +  ++      E+  E +        ++   L     + L+
Sbjct: 53  ---------VCVFHMDDHIVERAKRYHTGNEEWFEYY-----YLQWDVEWLTHQLFRQLK 98

Query: 200 NQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
               +  P +DH      +  + +     +++++G +L       K+    FD  
Sbjct: 99  ASHQLTLPFYDHETDTHSKRTVYLS-DSDMIMIEGVFLQR-----KEWRPFFDFV 147

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* Length = 245

 Score = 64.0 bits (156), Expect = 2e-12
 Identities = 27/148 (18%), Positives = 61/148 (41%), Gaps = 19/148 (12%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKST+  +++  + +   +         +      +L  D F+  L+   
Sbjct: 27  LIGVSGGTASGKSTVCEKIMELLGQNEVE---------QRQRKVVILSQDRFYKVLTA-- 75

Query: 169 AMEDPKEAHARRG--APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQ 226
             +  K    +     P  F+  L+   LKN+    +V  P++D      + +  +V   
Sbjct: 76  -EQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVY-P 133

Query: 227 HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
             VV+ +G  +F      +++  MF  +
Sbjct: 134 ADVVLFEGILVFYS----QEIRDMFHLR 157

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 29/146 (19%), Positives = 58/146 (39%), Gaps = 15/146 (10%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKS++ A++V+ + +         +          +L  D F+  L+   
Sbjct: 24  LIGVSGGTASGKSSVCAKIVQLLGQ---------NEVDYRQKQVVILSQDSFYRVLTSEQ 74

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
                 +       P  F+  L+L  LK +    +V  P +D       E+ + V     
Sbjct: 75  -KAKALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 132

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEK 254
           VV+ +G   F      ++V  +F  K
Sbjct: 133 VVLFEGILAFYS----QEVRDLFQMK 154

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 35/146 (23%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+G++G   +GK+TLA    + + K  P                +V+  D F    S++ 
Sbjct: 23  IIGISGVTNSGKTTLA----KNLQKHLPN--------------CSVISQDDFFKPESEI- 63

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
             E  K    +       N   +++ +            S D    +             
Sbjct: 64  --ETDKNGFLQYDVLEALNMEKMMSAISCWMESARHSVVSTDQESAEE----------IP 111

Query: 229 VVIVDGNYLFLDGGVWKDVSSMFDEK 254
           ++I++G  LF      K + ++++  
Sbjct: 112 ILIIEGFLLFNY----KPLDTIWNRS 133

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.6 bits (146), Expect = 1e-10
 Identities = 46/280 (16%), Positives = 77/280 (27%), Gaps = 77/280 (27%)

Query: 1   MDVSSLSTTPRACLSSSSTESTPLKRGELPSGHDGFLSFSWIRRNTNAQPV--FGKTRSL 58
            D   +   P++ LS    +              G L   W   +   + V  F +   L
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHII----MSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VL 87

Query: 59  VQN----KTSLKVLCSQQREIPVVEARCMDEVY---DALAQ----RLLPTSAL---ASNV 104
             N     + +K    Q   +  +     D +Y      A+    RL P   L      +
Sbjct: 88  RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLEL 147

Query: 105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
                V + G  G+GK+ +A +V             S+  Q K            F ++ 
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCL-----------SYKVQCKMD----------FKIF- 185

Query: 165 SQLDAMEDPKEAHARRGAPW-TFN----PLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVE 218
                              W        P  +L  L+ L  Q    +    DH     + 
Sbjct: 186 -------------------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 219 -DDILVGLQHKVVIVDGNY----LFLDGGVW-KDVSSMFD 252
              I   L+   ++    Y    L L   V      + F+
Sbjct: 227 IHSIQAELRR--LLKSKPYENCLLVLL-NVQNAKAWNAFN 263

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* Length = 211

 Score = 57.6 bits (140), Expect = 2e-10
 Identities = 33/151 (21%), Positives = 54/151 (35%), Gaps = 35/151 (23%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G+AG   +GK+TLA    + +       A +   +V       +LPMD ++  L  L 
Sbjct: 8   VIGIAGGTASGKTTLA----QAL-------ARTLGERV------ALLPMDHYYKDLGHLP 50

Query: 169 AMEDPKEAHARRG-----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV 223
                      R       P  F+  L L   + L     V  P +D            V
Sbjct: 51  --------LEERLRVNYDHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPV 102

Query: 224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
                VVI++G  +       K++  + D K
Sbjct: 103 R-PAPVVILEGILVLYP----KELRDLMDLK 128

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 Length = 290

 Score = 57.4 bits (138), Expect = 6e-10
 Identities = 25/164 (15%), Positives = 50/164 (30%), Gaps = 30/164 (18%)

Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
            KH I+ + G  GAG ST    V    ++I+ ++             A  +  D FH + 
Sbjct: 3   KKHPIISVTGSSGAGTST----VKHTFDQIFRREGVK----------AVSIEGDAFHRFN 48

Query: 165 SQLDAMEDPKEAHARRGAPWTFNPL-----LLLNCLKNLRNQGSVYAPSFDHGVGDPVED 219
                 E  +   A       F+        L    +     G     ++ H   +    
Sbjct: 49  RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAART 108

Query: 220 DILVGL---------QHKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
            +  G             ++  +G +  +      +++ + D K
Sbjct: 109 GVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSE-VNIAGLADLK 151

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 Length = 290

 Score = 56.2 bits (134), Expect = 2e-09
 Identities = 23/120 (19%), Positives = 43/120 (35%), Gaps = 20/120 (16%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
            +  +GP G+GKS  + ++   + + +  + S                +D F+L      
Sbjct: 33  FIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIG-----------YASIDDFYLTHEDQL 81

Query: 169 AMEDPKEAH---ARRGAPWTFNPLLLLNCLKNLRN------QGSVYAPSFDHGVGDPVED 219
            + +  + +     RG P T +  LL   L  + N      Q +V  P +D        D
Sbjct: 82  KLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGD 141

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 Length = 341

 Score = 42.9 bits (101), Expect = 5e-05
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           + + +VE+R     + AL+ +LL   A+         +G+ G PGAGKST        +
Sbjct: 26  QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLL 80

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* Length = 337

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           R I + E+R     + A  + L+   A+         VG+ G PG GKST    +   +
Sbjct: 25  RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLL 79

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 8/27 (29%), Positives = 14/27 (51%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
           K +  + GP G GKST    +  +++ 
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLDN 28

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* 3tk1_A* Length = 355

 Score = 42.2 bits (99), Expect = 9e-05
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
           R I +VE+      +   AQ+LL    L  +    H VG+ G PG GKST    +   +
Sbjct: 49  RAITLVEST--RPDHREQAQQLL--LRLLPDSGNAHRVGITGVPGVGKSTAIEALGMHL 103

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} Length = 349

 Score = 40.6 bits (95), Expect = 3e-04
 Identities = 12/49 (24%), Positives = 18/49 (36%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI 131
              +   +               +   VGL+GPPGAGKST      + +
Sbjct: 50  AQVLLQKVLLYHREQEQSNKGKPLAFRVGLSGPPGAGKSTFIEYFGKML 98

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	100.0
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	100.0
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	100.0
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	100.0
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	100.0
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	100.0
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	100.0
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	100.0
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	100.0
1g6h_A	257	High-affinity branched-chain amino acid transport	100.0
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	100.0
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	100.0
1b0u_A	262	Histidine permease; ABC transporter, transport pro	100.0
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	100.0
1sgw_A	214	Putative ABC transporter; structural genomics, P p	100.0
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	100.0
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	100.0
1ji0_A	240	ABC transporter; ATP binding protein, structural g	100.0
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	100.0
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	100.0
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	100.0
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	100.0
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	100.0
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	100.0
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	100.0
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	100.0
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	100.0
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	100.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	100.0
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	100.0
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	100.0
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	99.98
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	99.97
2ghi_A	260	Transport protein; multidrug resistance protein, M	99.97
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	99.97
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	99.96
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.96
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	99.96
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	99.96
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	99.96
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	99.96
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.96
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	99.96
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.95
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.95
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	99.95
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	99.94
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.94
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.94
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.94
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	99.93
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.93
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	99.93
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	99.93
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	99.93
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	99.91
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.91
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	99.9
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	99.88
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	99.85
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	99.85
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	99.84
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	99.84
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.82
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	99.82
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	99.82
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	99.82
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	99.8
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	99.8
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	99.77
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	99.76
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	99.73
1e69_A	322	Chromosome segregation SMC protein; structural mai	99.71
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.68
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	99.68
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	99.67
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	99.66
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.64
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	99.64
2og2_A	359	Putative signal recognition particle receptor; nuc	99.62
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	99.61
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	99.61
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	99.59
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	99.58
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	99.58
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	99.57
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	99.57
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	99.56
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.56
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	99.55
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.55
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	99.52
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	99.51
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	99.51
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	99.51
2eyu_A	261	Twitching motility protein PILT; pilus retraction	99.5
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.5
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	99.5
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	99.49
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	99.47
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	99.44
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	99.44
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	99.44
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	99.43
4a74_A	231	DNA repair and recombination protein RADA; hydrola	99.41
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	99.41
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	99.39
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	99.36
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	99.34
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.33
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	99.33
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	99.32
1p9r_A	418	General secretion pathway protein E; bacterial typ	99.31
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	99.28
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	99.27
2cvh_A	220	DNA repair and recombination protein RADB; filamen	99.22
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	99.21
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	99.21
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.2
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	99.18
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	99.17
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	99.17
1f2t_B	148	RAD50 ABC-ATPase; DNA double-strand break repair,	99.17
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	99.14
2ewv_A	372	Twitching motility protein PILT; pilus retraction	99.14
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	99.12
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	99.11
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	99.06
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	99.06
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.05
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	99.04
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	99.04
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.99
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	98.96
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	98.96
3kta_B	173	Chromosome segregation protein SMC; structural mai	98.95
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.95
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	98.94
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	98.94
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.93
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	98.92
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.84
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	98.82
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	98.79
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	98.78
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	98.78
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	98.76
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	98.75
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	98.69
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	98.68
3kta_A	182	Chromosome segregation protein SMC; structural mai	98.66
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.66
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	98.62
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	98.62
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	98.61
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.6
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	98.59
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	98.58
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.57
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.57
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.55
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.47
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.47
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.46
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	98.45
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.44
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.42
2r6a_A	454	DNAB helicase, replicative helicase; replication,	98.39
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	98.39
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	98.38
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	98.38
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	98.37
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	98.36
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	98.3
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.3
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.3
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	98.26
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	98.25
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.24
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	98.24
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	98.23
2ius_A	512	DNA translocase FTSK; nucleotide-binding, chromoso	98.21
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	98.19
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	98.19
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.16
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.15
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	98.15
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	98.13
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	98.1
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	98.09
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	98.06
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	98.04
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	98.01
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	97.98
3ice_A	422	Transcription termination factor RHO; transcriptio	97.98
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	97.97
2xau_A	773	PRE-mRNA-splicing factor ATP-dependent RNA helica;	97.97
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	97.96
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.95
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.94
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.92
4a1f_A	338	DNAB helicase, replicative DNA helicase; hydrolase	97.92
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.85
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.82
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	97.81
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	97.81
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.81
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.79
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.77
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	97.76
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.75
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	97.74
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	97.73
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.72
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.71
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	97.7
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.7
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.68
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.67
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.64
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.61
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	97.61
2z43_A	324	DNA repair and recombination protein RADA; archaea	97.6
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.57
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	97.53
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.53
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.52
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.52
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.5
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.49
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.48
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	97.45
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.44
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.44
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.43
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	97.43
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	97.4
2wji_A	165	Ferrous iron transport protein B homolog; membrane	97.38
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.37
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.36
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.36
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.36
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.34
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.33
1via_A	175	Shikimate kinase; structural genomics, transferase	97.32
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	97.31
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	97.31
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.3
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.3
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.27
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.25
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.25
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	97.25
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.24
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.24
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	97.24
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.24
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.23
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.22
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.22
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.2
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.19
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.17
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.16
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.16
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	97.16
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.15
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	97.11
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.11
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.11
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.09
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.08
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.07
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.06
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.03
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.02
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.0
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.99
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.97
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.97
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.96
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.96
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.96
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.95
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.95
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.94
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.94
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.94
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.93
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.91
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.9
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.88
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.88
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.87
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.87
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.85
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.84
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.83
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.83
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.78
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.77
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.73
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.72
2q6t_A	444	DNAB replication FORK helicase; hydrolase; 2.90A {	96.72
3bos_A	242	Putative DNA replication factor; P-loop containing	96.71
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.71
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.7
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.69
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.68
2xxa_A	433	Signal recognition particle protein; protein trans	96.68
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.67
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.67
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.67
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.65
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.64
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.63
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.63
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	96.62
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.62
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.62
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.62
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.61
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.61
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.6
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.59
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.59
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.58
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.58
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.57
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.57
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.57
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.55
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.54
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.54
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.54
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.53
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.53
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.52
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.52
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.52
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	96.52
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.52
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.51
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.48
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.48
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.48
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.48
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	96.47
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.46
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.45
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.45
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	96.45
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.45
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.44
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.44
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.44
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.43
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.43
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.43
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.42
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.41
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.41
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.4
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.4
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.4
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	96.4
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.39
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.39
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.37
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.37
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	96.37
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.37
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.37
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.36
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	96.36
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.36
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.35
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.35
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.35
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.34
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.34
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.34
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	96.32
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.32
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	96.32
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.31
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.31
1qvr_A	854	CLPB protein; coiled coil, AAA ATPase, chaperone;	96.3
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.3
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.3
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.3
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.3
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.28
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.27
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.27
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	96.26
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.26
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.25
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.25
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.24
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.24
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.22
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.22
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.21
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	96.2
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.2
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	96.19
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.19
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.19
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.17
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	96.16
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	96.16
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	96.16
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.16
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	96.14
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	96.14
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.13
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	96.12
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	96.12
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	96.11
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.09
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	96.09
2i1q_A	322	DNA repair and recombination protein RADA; ATPase,	96.09
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.09
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	96.08
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	96.06
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.05
2fh5_B	214	SR-beta, signal recognition particle receptor beta	96.05
1sky_E	473	F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp	96.04
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	96.03
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	96.0
2hf9_A	226	Probable hydrogenase nickel incorporation protein	95.99
3bgw_A	444	DNAB-like replicative helicase; ATPase, replicatio	95.98
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.98
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.98
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.97
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.96
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.95
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.94
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.94
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.93
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.92
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.91
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.91
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.91
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.88
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.86
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.84
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.84
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.84
1u94_A	356	RECA protein, recombinase A; homologous recombinat	95.83
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.82
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.81
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.79
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.77
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.74
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	95.72
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.71
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.7
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	95.7
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.69
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.69
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.69
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.64
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	95.64
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.63
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.63
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	95.56
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	95.5
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.5
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.49
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	95.49
3pvs_A	447	Replication-associated recombination protein A; ma	95.46
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	95.46
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.45
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	95.45
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.43
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.41
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.4
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.37
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.36
2vhj_A	331	Ntpase P4, P4; non- hydrolysable ATP analogue, hyd	95.3
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.3
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	95.29
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	95.28
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.26
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	95.21
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	95.21
3cmu_A	2050	Protein RECA, recombinase A; homologous recombinat	95.14
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	95.11
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	95.1
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	95.07
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.07
3pxi_A	758	Negative regulator of genetic competence CLPC/MEC;	95.06
2qgz_A	308	Helicase loader, putative primosome component; str	95.04
1g41_A	444	Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep	95.02
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.02
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.02
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	94.02

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=100.00  E-value=6.9e-38  Score=281.56  Aligned_cols=174  Identities=16%  Similarity=0.146  Sum_probs=144.1

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (254)
                      ++++|+++||++.|+.....+.+|+||||+|++|+++||+||||||||||+|+|+|+++   |++|+ .++|...     
T Consensus        21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~---p~~G~I~i~G~~i~~~~~   97 (366)
T 3tui_C           21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSE   97 (366)
T ss_dssp             --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECSSCCH
T ss_pred             CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCH
Confidence            35689999999999753333457899999999999999999999999999999999998   99999 6777432     


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                            +...|. ++++...++  .+++.+++.+.....+.+......++.++++.+++.  .+.++.+|||||||||+|
T Consensus        98 ~~~~~~r~~Ig~-v~Q~~~l~~--~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaI  174 (366)
T 3tui_C           98 SELTKARRQIGM-IFQHFNLLS--SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAI  174 (366)
T ss_dssp             HHHHHHHTTEEE-ECSSCCCCT--TSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHH
T ss_pred             HHHHHHhCcEEE-EeCCCccCC--CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHH
Confidence                  134665 666643332  379999999877766665444556788899998886  578899999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||+.+|++||+||||++||+..++.+.++|.+
T Consensus       175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~  208 (366)
T 3tui_C          175 ARALASNPKVLLCDQATSALDPATTRSILELLKD  208 (366)
T ss_dssp             HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998863

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=100.00  E-value=9e-38  Score=264.57  Aligned_cols=169  Identities=17%  Similarity=0.098  Sum_probs=136.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (254)
                      +++++++||++.|++.  .  +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|....     
T Consensus         2 ~~~l~~~~l~~~y~~~--~--~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~   74 (224)
T 2pcj_A            2 AEILRAENIKKVIRGY--E--ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEK   74 (224)
T ss_dssp             CEEEEEEEEEEEETTE--E--EEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSC---CSEEEEEETTEECCSSCHH
T ss_pred             CcEEEEEeEEEEECCE--e--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCCCCHH
Confidence            4579999999999873  2  6699999999999999999999999999999999998   99999 66664321     


Q ss_pred             -------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          149 -------PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       149 -------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                             ...++ +.++...++  .+++.+++.+.....+.........+.++++.+++.  .+.++.+||||||||+++
T Consensus        75 ~~~~~~~~~i~~-v~q~~~l~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~l  151 (224)
T 2pcj_A           75 ELSLLRNRKLGF-VFQFHYLIP--ELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAI  151 (224)
T ss_dssp             HHHHHHHHHEEE-ECSSCCCCT--TSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHH
T ss_pred             HHHHHHhCcEEE-EecCcccCC--CCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHH
Confidence                   12454 566543322  378999988765544433223345677889988876  466788999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+|++.+|++|||||||++||+..++.+.+++.+
T Consensus       152 aral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~  185 (224)
T 2pcj_A          152 ARALANEPILLFADEPTGNLDSANTKRVMDIFLK  185 (224)
T ss_dssp             HHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998853

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=100.00  E-value=1.4e-37  Score=281.04  Aligned_cols=169  Identities=14%  Similarity=0.120  Sum_probs=141.8

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |.+|+++||+|.|++..    +|+++||++++||+++|+||||||||||+|+|+|+++   |++|+ .++|...      
T Consensus         1 M~~l~~~~l~~~yg~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~~~~~~~~   73 (381)
T 3rlf_A            1 MASVQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPA   73 (381)
T ss_dssp             -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCGG
T ss_pred             CCEEEEEeEEEEECCEE----EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCC---CCCeEEEECCEECCCCCHH
Confidence            45799999999998743    6799999999999999999999999999999999998   99999 6776432      


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~  225 (254)
                      ....|. +.++.. ++ +.+++.+|+.+.....+.+......++.++++.+++.  .+.++.+|||||||||+|||||+.
T Consensus        74 ~r~ig~-VfQ~~~-l~-p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~  150 (381)
T 3rlf_A           74 ERGVGM-VFQSYA-LY-PHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVA  150 (381)
T ss_dssp             GSCEEE-ECTTCC-CC-TTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHH
T ss_pred             HCCEEE-EecCCc-CC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHc
Confidence            123564 666543 33 2379999999887777765555566788899988886  578889999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|+||||||||++||+..+.++.++|.+
T Consensus       151 ~P~lLLLDEPts~LD~~~~~~l~~~l~~  178 (381)
T 3rlf_A          151 EPSVFLLDEPLSNLDAALRVQMRIEISR  178 (381)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999988753

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=100.00  E-value=8.5e-38  Score=280.69  Aligned_cols=166  Identities=11%  Similarity=0.170  Sum_probs=137.1

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ++|+++||+|.|++..    +|+|+||+|++||+++|+||||||||||+|+|+|+++   |++|+ .++|...       
T Consensus         3 ~~l~i~~ls~~y~~~~----~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~---p~~G~I~i~G~~i~~~~~~~   75 (359)
T 3fvq_A            3 AALHIGHLSKSFQNTP----VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ---PDSGEISLSGKTIFSKNTNL   75 (359)
T ss_dssp             CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEESSSCBC
T ss_pred             cEEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCC---CCCcEEEECCEECccccccc
Confidence            4799999999998743    6799999999999999999999999999999999998   99999 6666321       


Q ss_pred             ---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          148 ---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       148 ---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         ....|. +.++.. ++ +.+++.+|+.+.....+.+......++.++++.+++.  .+.++.+|||||||||+||||
T Consensus        76 ~~~~r~ig~-vfQ~~~-l~-p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArA  152 (359)
T 3fvq_A           76 PVRERRLGY-LVQEGV-LF-PHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARA  152 (359)
T ss_dssp             CGGGSCCEE-ECTTCC-CC-TTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred             chhhCCEEE-EeCCCc-CC-CCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHH
Confidence               134565 666543 33 2379999987755444444444556788899988886  578889999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      |+.+|++|||||||++||+..+.++++.+
T Consensus       153 L~~~P~lLLLDEPts~LD~~~r~~l~~~l  181 (359)
T 3fvq_A          153 LAPDPELILLDEPFSALDEQLRRQIREDM  181 (359)
T ss_dssp             HTTCCSEEEEESTTTTSCHHHHHHHHHHH
T ss_pred             HHcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence            99999999999999999999999998755

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=100.00  E-value=4e-37  Score=262.36  Aligned_cols=171  Identities=15%  Similarity=0.156  Sum_probs=135.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      +|+++||++.|++......+|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|....       
T Consensus         1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~~~   77 (235)
T 3tif_A            1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL   77 (235)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred             CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCceEEEECCEEcccCCHHHH
Confidence            48999999999853222336799999999999999999999999999999999998   99999 66764321       


Q ss_pred             -----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc---CCCCCccHHHHHHHHHhhccCC---CCCCCCCChhhhhhH
Q 025366          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARR---GAPWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPV  217 (254)
Q Consensus       149 -----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~---g~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv  217 (254)
                           ...|+ +.++...++  .+++.+++.+.....   +.........+.++++.+++..   +.++.+|||||+||+
T Consensus        78 ~~~~~~~i~~-v~Q~~~l~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv  154 (235)
T 3tif_A           78 TKIRRDKIGF-VFQQFNLIP--LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV  154 (235)
T ss_dssp             HHHHHHHEEE-ECTTCCCCT--TSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred             HHHhhccEEE-EecCCccCC--CCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHH
Confidence                 12555 666654332  378999987755432   1122223455678888888752   668899999999999


Q ss_pred             hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|+||+.+|++||+||||++||+..++++.+++.+
T Consensus       155 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~  190 (235)
T 3tif_A          155 AIARALANNPPIILADQPTWALDSKTGEKIMQLLKK  190 (235)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998853

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=100.00  E-value=2.5e-37  Score=267.71  Aligned_cols=169  Identities=15%  Similarity=0.191  Sum_probs=135.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (254)
                      +++|+++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|....     
T Consensus        22 ~~~l~i~~l~~~y~~~~----vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~   94 (263)
T 2olj_A           22 LQMIDVHQLKKSFGSLE----VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLED---FDEGEIIIDGINLKAKDTN   94 (263)
T ss_dssp             CCSEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEESSSTTCC
T ss_pred             hheEEEEeEEEEECCEE----EEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCEECCCcccc
Confidence            45799999999998633    6699999999999999999999999999999999997   99999 66764321     


Q ss_pred             -----CCeEEEeeCCCCCCCCcCCChhhcHHHHH-HHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       149 -----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia  220 (254)
                           ...++ +.++...+  +.+++.+++.+.. ...+.........+.++++.+++.  .+.++.+||||||||+++|
T Consensus        95 ~~~~~~~i~~-v~Q~~~l~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lA  171 (263)
T 2olj_A           95 LNKVREEVGM-VFQRFNLF--PHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIA  171 (263)
T ss_dssp             HHHHHHHEEE-ECSSCCCC--TTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             HHHHhCcEEE-EeCCCcCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHH
Confidence                 12454 66654332  2378999988743 333432222345677888888875  4677889999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+.+|++|||||||++||+..++.+.++|.+
T Consensus       172 raL~~~p~lllLDEPts~LD~~~~~~~~~~l~~  204 (263)
T 2olj_A          172 RALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQ  204 (263)
T ss_dssp             HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998853

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=100.00  E-value=2.7e-37  Score=269.08  Aligned_cols=169  Identities=17%  Similarity=0.151  Sum_probs=139.2

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ++|+++||++.|++.. .  +|+++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .++|...       
T Consensus         6 ~~l~i~~ls~~y~~~~-~--~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~---p~~G~I~~~G~~i~~~~~~~   79 (275)
T 3gfo_A            6 YILKVEELNYNYSDGT-H--ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK---PSSGRILFDNKPIDYSRKGI   79 (275)
T ss_dssp             EEEEEEEEEEECTTSC-E--EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCCSHHHH
T ss_pred             cEEEEEEEEEEECCCC-e--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC---CCCeEEEECCEECCcccccH
Confidence            4799999999997531 2  6699999999999999999999999999999999998   99999 6777533       


Q ss_pred             ---CCCeEEEeeCCCC-CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhh
Q 025366          148 ---PPDVATVLPMDGF-HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       148 ---~~~~g~~i~~~~~-~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~  221 (254)
                         ....|+ +.++.. .++  .+++.+++.+.....+.+.......+.++++.+++.  .+.++.+||||||||++||+
T Consensus        80 ~~~~~~ig~-v~Q~~~~~~~--~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAr  156 (275)
T 3gfo_A           80 MKLRESIGI-VFQDPDNQLF--SASVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAG  156 (275)
T ss_dssp             HHHHHSEEE-ECSSGGGTCC--SSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHH
T ss_pred             HHHhCcEEE-EEcCcccccc--cCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHH
Confidence               123565 666532 223  268999998877666654444456678889988886  56788899999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+.+|++|||||||++||+..++.+.+++.+
T Consensus       157 aL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~  188 (275)
T 3gfo_A          157 VLVMEPKVLILDEPTAGLDPMGVSEIMKLLVE  188 (275)
T ss_dssp             HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999998853

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=3.6e-37  Score=265.76  Aligned_cols=170  Identities=13%  Similarity=0.091  Sum_probs=136.8

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (254)
                      .|++|+++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...     
T Consensus        12 ~~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~   84 (256)
T 1vpl_A           12 HMGAVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPH   84 (256)
T ss_dssp             --CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHH
T ss_pred             cCCeEEEEEEEEEECCEE----EEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEECCEECCccHH
Confidence            388999999999998633    6699999999999999999999999999999999997   99999 5666432     


Q ss_pred             --CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          148 --PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       148 --~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                        ....++ +.++...+.  .+++.+++.+.....+.........+.++++.+++.  .+.++.+||+||+||+++|+||
T Consensus        85 ~~~~~i~~-v~q~~~l~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL  161 (256)
T 1vpl_A           85 EVRKLISY-LPEEAGAYR--NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARAL  161 (256)
T ss_dssp             HHHTTEEE-ECTTCCCCT--TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHH
T ss_pred             HHhhcEEE-EcCCCCCCC--CCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHH
Confidence              124565 666544322  378999988765444433222234677888888876  4677889999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.+|++|||||||++||+..++.+.++|.+
T Consensus       162 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~  191 (256)
T 1vpl_A          162 MVNPRLAILDEPTSGLDVLNAREVRKILKQ  191 (256)
T ss_dssp             TTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HcCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999998853

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=100.00  E-value=1.3e-36  Score=273.63  Aligned_cols=169  Identities=17%  Similarity=0.179  Sum_probs=139.5

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |.+|+++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...      
T Consensus         1 m~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   73 (362)
T 2it1_A            1 MVEIKLENIVKKFGNFT----ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK---PTSGKIYFDEKDVTELPPK   73 (362)
T ss_dssp             CCCEEEEEEEEESSSSE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             CcEEEEEeEEEEECCEE----EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCC---CCceEEEECCEECCcCCHh
Confidence            34699999999998743    6699999999999999999999999999999999998   99999 6666422      


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~  225 (254)
                      ....|. +.++.. ++ +.+++.+|+.+.....+.+......++.++++.+++.  .+.++.+|||||||||++|+||+.
T Consensus        74 ~r~ig~-v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~  150 (362)
T 2it1_A           74 DRNVGL-VFQNWA-LY-PHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVK  150 (362)
T ss_dssp             GTTEEE-ECTTCC-CC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred             HCcEEE-EecCcc-cC-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHc
Confidence            134565 666543 33 2379999998876655554333445678899998886  467888999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|++|||||||++||+..+.++.++|.+
T Consensus       151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~  178 (362)
T 2it1_A          151 EPEVLLLDEPLSNLDALLRLEVRAELKR  178 (362)
T ss_dssp             CCSEEEEESGGGGSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999988753

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=100.00  E-value=9.1e-37  Score=263.43  Aligned_cols=169  Identities=14%  Similarity=0.126  Sum_probs=133.6

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (254)
                      +++|+++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|....     
T Consensus         5 ~~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~   77 (257)
T 1g6h_A            5 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA   77 (257)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred             CcEEEEeeeEEEECCEe----eEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECCEECCCCCHH
Confidence            56899999999998733    6799999999999999999999999999999999998   99999 66664321     


Q ss_pred             ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH--cC-----------CCCCccHHHHHHHHHhhccC--CCCCCCCC
Q 025366          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RG-----------APWTFNPLLLLNCLKNLRNQ--GSVYAPSF  209 (254)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~--~g-----------~~~~~~~~~~~~~l~~l~l~--~~~~~~~l  209 (254)
                          ...++ +.++...+  +.+++.+++.+....  .+           .........+.++++.+++.  .+.++.+|
T Consensus        78 ~~~~~~i~~-v~q~~~l~--~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  154 (257)
T 1g6h_A           78 ELYHYGIVR-TFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL  154 (257)
T ss_dssp             HHHHHTEEE-CCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred             HHHhCCEEE-EccCCccC--CCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhC
Confidence                12454 56654322  236888888653321  12           11112234567888888875  46778899


Q ss_pred             ChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       210 S~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||||+++|+|++.+|++|||||||++||+..++.+.++|.+
T Consensus       155 SgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~  198 (257)
T 1g6h_A          155 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE  198 (257)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998853

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=100.00  E-value=1.6e-36  Score=274.36  Aligned_cols=169  Identities=14%  Similarity=0.130  Sum_probs=139.1

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC-------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-------  146 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~-------  146 (254)
                      |.+|+++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|..       
T Consensus         1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~~~~~~~~   73 (372)
T 1g29_1            1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG   73 (372)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred             CCEEEEEeEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC---CCccEEEECCEECcccccc
Confidence            45799999999998633    6699999999999999999999999999999999998   99999 566632       


Q ss_pred             --C---CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          147 --K---PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       147 --~---~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                        .   ....|. +.++.. ++ +.+++.+|+.+.....+.+......++.++++.+++.  .+.++.+|||||||||++
T Consensus        74 ~~~~~~~r~ig~-v~Q~~~-l~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRval  150 (372)
T 1g29_1           74 IFVPPKDRDIAM-VFQSYA-LY-PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL  150 (372)
T ss_dssp             EECCGGGSSEEE-ECSCCC-CC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             ccCCHhHCCEEE-EeCCCc-cC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHH
Confidence              1   123565 566543 33 2379999999877665554333345678889988886  577889999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+.+|++|||||||++||+..++++.++|.+
T Consensus       151 ArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  184 (372)
T 1g29_1          151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK  184 (372)
T ss_dssp             HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999988753

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=100.00  E-value=2.2e-36  Score=271.49  Aligned_cols=169  Identities=14%  Similarity=0.235  Sum_probs=139.5

Q ss_pred             cceEEEecceeec-ccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----
Q 025366           75 IPVVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y-~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----  147 (254)
                      ..+|+++||++.| ++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...     
T Consensus        12 ~~~l~~~~l~~~y~g~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~   84 (355)
T 1z47_A           12 SMTIEFVGVEKIYPGGAR----SVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLER---PTKGDVWIGGKRVTDLPP   84 (355)
T ss_dssp             CEEEEEEEEEECCTTSTT----CEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTCCG
T ss_pred             CceEEEEEEEEEEcCCCE----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEECCEECCcCCh
Confidence            3579999999999 7643    6799999999999999999999999999999999998   99999 6666422     


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                       ....|. +.++.. ++ +.+++.+|+.+.....+.+......++.++++.+++.  .+.++.+||||||||+++|+||+
T Consensus        85 ~~r~ig~-v~Q~~~-l~-~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~  161 (355)
T 1z47_A           85 QKRNVGL-VFQNYA-LF-QHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALA  161 (355)
T ss_dssp             GGSSEEE-ECGGGC-CC-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHT
T ss_pred             hhCcEEE-EecCcc-cC-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHH
Confidence             234565 566543 22 2379999998876655554333456678899988886  57788999999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|++|||||||++||+..++++.++|.+
T Consensus       162 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  190 (355)
T 1z47_A          162 PRPQVLLFDEPFAAIDTQIRRELRTFVRQ  190 (355)
T ss_dssp             TCCSEEEEESTTCCSSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999988753

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=100.00  E-value=1.6e-36  Score=262.65  Aligned_cols=168  Identities=14%  Similarity=0.138  Sum_probs=135.0

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++|+++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|....      
T Consensus         5 ~~l~i~~l~~~y~~~~----vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   77 (262)
T 1b0u_A            5 NKLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKD   77 (262)
T ss_dssp             CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTT
T ss_pred             ceEEEeeEEEEECCEE----EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEcccccccc
Confidence            3699999999998633    6699999999999999999999999999999999998   99999 66664321      


Q ss_pred             ---------------CCeEEEeeCCCCCCCCcCCChhhcHHHHH-HHcCCCCCccHHHHHHHHHhhccC---CCCCCCCC
Q 025366          149 ---------------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSF  209 (254)
Q Consensus       149 ---------------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~l  209 (254)
                                     ...|+ +.++...+  +.+++.+++.+.. ...+.........+.++++.+++.   .+.++.+|
T Consensus        78 ~~~~~~~~~~~~~~~~~i~~-v~Q~~~l~--~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~L  154 (262)
T 1b0u_A           78 GQLKVADKNQLRLLRTRLTM-VFQHFNLW--SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL  154 (262)
T ss_dssp             SSEEESCHHHHHHHHHHEEE-ECSSCCCC--TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGS
T ss_pred             ccccccChhhHHHHhcceEE-EecCcccC--CCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccC
Confidence                           12454 66654322  2378999988743 333333222345677889988875   46778899


Q ss_pred             ChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       210 S~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||+||+++|+||+.+|+||||||||++||+..++.+.++|.+
T Consensus       155 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~  198 (262)
T 1b0u_A          155 SGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ  198 (262)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998853

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=100.00  E-value=9e-37  Score=274.49  Aligned_cols=169  Identities=15%  Similarity=0.159  Sum_probs=135.9

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |.+|+++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...      
T Consensus         1 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   73 (359)
T 2yyz_A            1 MPSIRVVNLKKYFGKVK----AVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK---PTSGEIYFDDVLVNDIPPK   73 (359)
T ss_dssp             -CCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             CcEEEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC---CCccEEEECCEECCCCChh
Confidence            34699999999998633    6799999999999999999999999999999999998   99999 6676432      


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~  225 (254)
                      ....|. +.++... + +.+++.+|+.+.....+.+......++.++++.+++.  .+.++.+||||||||+++|+||+.
T Consensus        74 ~r~ig~-v~Q~~~l-~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~  150 (359)
T 2yyz_A           74 YREVGM-VFQNYAL-Y-PHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVK  150 (359)
T ss_dssp             GTTEEE-ECSSCCC-C-TTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred             hCcEEE-EecCccc-C-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHc
Confidence            234565 5665433 2 2379999987754333332222235678889988886  577889999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|++|||||||++||+..++++.++|.+
T Consensus       151 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~  178 (359)
T 2yyz_A          151 QPKVLLFDEPLSNLDANLRMIMRAEIKH  178 (359)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999988753

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=100.00  E-value=3.4e-36  Score=253.11  Aligned_cols=165  Identities=16%  Similarity=0.201  Sum_probs=135.4

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCe
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDV  151 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~  151 (254)
                      .+|+++||++.|++ .    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...   ....
T Consensus         9 ~~l~~~~ls~~y~~-~----il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~i   80 (214)
T 1sgw_A            9 SKLEIRDLSVGYDK-P----VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKI   80 (214)
T ss_dssp             CEEEEEEEEEESSS-E----EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGE
T ss_pred             ceEEEEEEEEEeCC-e----EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCeEEEECCEEhhhhcCcE
Confidence            57999999999976 3    6799999999999999999999999999999999997   99999 5666321   2335


Q ss_pred             EEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC-CCCCCCCChhhhhhHhhhhhhcCCCcEE
Q 025366          152 ATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVV  230 (254)
Q Consensus       152 g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~ia~al~~~p~vl  230 (254)
                      ++ +.++...+  +.+++.+++.+.....+. .. ....+.++++.+++.. +.++.+||+||+||+++|+|++.+|++|
T Consensus        81 ~~-v~q~~~~~--~~~tv~enl~~~~~~~~~-~~-~~~~~~~~l~~~gl~~~~~~~~~LSgGqkqrv~laraL~~~p~ll  155 (214)
T 1sgw_A           81 FF-LPEEIIVP--RKISVEDYLKAVASLYGV-KV-NKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIY  155 (214)
T ss_dssp             EE-ECSSCCCC--TTSBHHHHHHHHHHHTTC-CC-CHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEE
T ss_pred             EE-EeCCCcCC--CCCCHHHHHHHHHHhcCC-ch-HHHHHHHHHHHcCCCcCCCChhhCCHHHHHHHHHHHHHHhCCCEE
Confidence            55 66654432  236899998876544443 22 2567788899888765 6677899999999999999999999999


Q ss_pred             EEeCCCCCCCHHHHHHHHHHhhc
Q 025366          231 IVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       231 IlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||||++||+..++.+.+++.+
T Consensus       156 lLDEPts~LD~~~~~~l~~~l~~  178 (214)
T 1sgw_A          156 VLDDPVVAIDEDSKHKVLKSILE  178 (214)
T ss_dssp             EEESTTTTSCTTTHHHHHHHHHH
T ss_pred             EEECCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999998853

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=100.00  E-value=3.7e-36  Score=260.80  Aligned_cols=167  Identities=14%  Similarity=0.100  Sum_probs=135.0

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----  148 (254)
                      +++|+++||++.|++..    +|+++||++++|+++||+||||||||||+|+|+|+++   |++|+ .++|....     
T Consensus         9 ~~~l~~~~l~~~~~~~~----vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~~~~~~~~~   81 (266)
T 4g1u_C            9 VALLEASHLHYHVQQQA----LINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLS---PSHGECHLLGQNLNSWQPK   81 (266)
T ss_dssp             CCEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSC---CSSCEEEETTEETTTSCHH
T ss_pred             cceEEEEeEEEEeCCee----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECCEECCcCCHH
Confidence            46899999999998743    6699999999999999999999999999999999998   99999 67774321     


Q ss_pred             ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhh
Q 025366          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al  223 (254)
                         ...+. +.++....+.  +++.+++.+.....  ........+.++++.+++.  .+.++.+|||||+||++||+||
T Consensus        82 ~~~~~i~~-v~q~~~~~~~--~tv~e~l~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL  156 (266)
T 4g1u_C           82 ALARTRAV-MRQYSELAFP--FSVSEVIQMGRAPY--GGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVL  156 (266)
T ss_dssp             HHHHHEEE-ECSCCCCCSC--CBHHHHHHGGGTTS--CSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHH
T ss_pred             HHhheEEE-EecCCccCCC--CCHHHHHHhhhhhc--CcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHH
Confidence               12454 5555443232  68888876543222  2334456778899988876  4667889999999999999999


Q ss_pred             cC------CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          224 GL------QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       224 ~~------~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.      +|++||+||||++||+..+.++.+++.+
T Consensus       157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~  192 (266)
T 4g1u_C          157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQ  192 (266)
T ss_dssp             HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHH
T ss_pred             hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            98      9999999999999999999999998853

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=100.00  E-value=1.8e-36  Score=273.77  Aligned_cols=169  Identities=12%  Similarity=0.133  Sum_probs=133.9

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |.+|+++||++.|++..    +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...      
T Consensus         9 M~~l~~~~l~~~y~~~~----vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   81 (372)
T 1v43_A            9 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK   81 (372)
T ss_dssp             CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             eeeEEEEEEEEEECCEE----EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCCCChh
Confidence            55799999999998733    6799999999999999999999999999999999998   99999 6776432      


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~  225 (254)
                      ....|. +.++... + +.+++.+|+.+.....+.+......++.++++.+++.  .+.++.+|||||||||++|+||+.
T Consensus        82 ~r~ig~-v~Q~~~l-~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~  158 (372)
T 1v43_A           82 DRNISM-VFQSYAV-W-PHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV  158 (372)
T ss_dssp             GGTEEE-EEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred             hCcEEE-EecCccc-C-CCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhc
Confidence            124565 6665433 2 2379999887643323332222345678889988876  578889999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|++|||||||++||+..++++.++|.+
T Consensus       159 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~  186 (372)
T 1v43_A          159 EPDVLLMDEPLSNLDAKLRVAMRAEIKK  186 (372)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999988753

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=100.00  E-value=7.6e-36  Score=255.22  Aligned_cols=167  Identities=17%  Similarity=0.126  Sum_probs=131.6

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++++++||++.|++.  .  +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|....      
T Consensus         5 ~~l~~~~l~~~y~~~--~--vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   77 (240)
T 1ji0_A            5 IVLEVQSLHVYYGAI--H--AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV   77 (240)
T ss_dssp             EEEEEEEEEEEETTE--E--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred             ceEEEEeEEEEECCe--e--EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCceEEECCEECCCCCHHH
Confidence            479999999999873  2  6699999999999999999999999999999999998   99999 66764321      


Q ss_pred             ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhc-cC--CCCCCCCCChhhhhhHhhhhh
Q 025366          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLR-NQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~-l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         ...++ +.++...+.  .+++.+++.+.. ............+.++++.++ +.  .+.++.+||+||+||+++|+|
T Consensus        78 ~~~~~i~~-v~q~~~l~~--~ltv~enl~~~~-~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAra  153 (240)
T 1ji0_A           78 INRMGIAL-VPEGRRIFP--ELTVYENLMMGA-YNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRA  153 (240)
T ss_dssp             HHHTTEEE-ECSSCCCCT--TSBHHHHHHGGG-TTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred             HHhCCEEE-EecCCccCC--CCcHHHHHHHhh-hcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHH
Confidence               12565 666543322  368888886632 111222223345667777774 53  567788999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+.+|++|||||||++||+..++.+.++|.+
T Consensus       154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~  184 (240)
T 1ji0_A          154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQK  184 (240)
T ss_dssp             HTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999998853

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=100.00  E-value=2.3e-36  Score=271.65  Aligned_cols=171  Identities=14%  Similarity=0.165  Sum_probs=136.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |.+|+++||++.|++  ....+|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...      
T Consensus         1 M~~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~i~g~~i~~~~~~   75 (353)
T 1oxx_K            1 MVRIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL   75 (353)
T ss_dssp             CCCEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred             CcEEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCceEEEECCEECcccccc
Confidence            457999999999976  33114599999999999999999999999999999999998   99999 5666321      


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia  220 (254)
                           ....|. +.++... + +.+++.+|+.+.....+.+......++.++++.+++.  .+.++.+||||||||+++|
T Consensus        76 ~~~~~~r~ig~-v~Q~~~l-~-~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalA  152 (353)
T 1oxx_K           76 IVPPEDRKIGM-VFQTWAL-Y-PNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA  152 (353)
T ss_dssp             SSCGGGSCEEE-EETTSCC-C-TTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             cCChhhCCEEE-EeCCCcc-C-CCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHH
Confidence                 123565 6665433 2 2379999987754433433223345678889988886  5778899999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+.+|++|||||||++||+..++++.++|.+
T Consensus       153 raL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~  185 (353)
T 1oxx_K          153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKE  185 (353)
T ss_dssp             HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred             HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998753

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=100.00  E-value=5.3e-36  Score=261.49  Aligned_cols=170  Identities=12%  Similarity=0.006  Sum_probs=131.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++|+++||++.|++..    +|+|+||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|....      
T Consensus        20 ~~l~~~~l~~~y~~~~----vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~~~~~~~~~   92 (279)
T 2ihy_A           20 MLIQLDQIGRMKQGKT----ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEP---ATSGTVNLFGKMPGKVGYSA   92 (279)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTBCCC---CCH
T ss_pred             ceEEEEeEEEEECCEE----EEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCeEEEECCEEcccccCCH
Confidence            3799999999998732    6699999999999999999999999999999999998   99999 66764322      


Q ss_pred             ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH----cCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHh
Q 025366          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVE  218 (254)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~----~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~  218 (254)
                          ...++ +.++....+...+++.+++.+....    ++.........+.++++.+++.  .+.++.+||||||||++
T Consensus        93 ~~~~~~i~~-v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~  171 (279)
T 2ihy_A           93 ETVRQHIGF-VSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVM  171 (279)
T ss_dssp             HHHHTTEEE-ECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHH
T ss_pred             HHHcCcEEE-EEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHH
Confidence                23555 5555322222235888887653111    1111222234567888888875  46778899999999999


Q ss_pred             hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|+||+.+|++|||||||++||+..++.+.++|.+
T Consensus       172 lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~  206 (279)
T 2ihy_A          172 IARALMGQPQVLILDEPAAGLDFIARESLLSILDS  206 (279)
T ss_dssp             HHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999998853

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=100.00  E-value=4e-35  Score=262.89  Aligned_cols=163  Identities=14%  Similarity=0.169  Sum_probs=135.7

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------C
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------P  149 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------~  149 (254)
                      ||+++||++.|++  .   +++++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|....      .
T Consensus         1 ml~~~~l~~~y~~--~---~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~---p~~G~I~~~g~~i~~~~~~~r   72 (348)
T 3d31_A            1 MIEIESLSRKWKN--F---SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH   72 (348)
T ss_dssp             CEEEEEEEEECSS--C---EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred             CEEEEEEEEEECC--E---EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCC---CCCcEEEECCEECCCCchhhC
Confidence            4889999999976  3   5699999999999999999999999999999999998   99999 66764321      2


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                      ..|. +.++.. ++ +.+++.+|+.+.....+.+..   .++.++++.+++.  .+.++.+||||||||+++|+||+.+|
T Consensus        73 ~ig~-v~Q~~~-l~-~~ltv~enl~~~~~~~~~~~~---~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P  146 (348)
T 3d31_A           73 DIAF-VYQNYS-LF-PHMNVKKNLEFGMRMKKIKDP---KRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP  146 (348)
T ss_dssp             TCEE-ECTTCC-CC-TTSCHHHHHHHHHHHHCCCCH---HHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred             cEEE-EecCcc-cC-CCCCHHHHHHHHHHHcCCCHH---HHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            3565 566543 32 237999999887665554332   6778899998886  56788899999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|||||||++||+..++++.++|.+
T Consensus       147 ~lLLLDEP~s~LD~~~~~~l~~~l~~  172 (348)
T 3d31_A          147 KILLLDEPLSALDPRTQENAREMLSV  172 (348)
T ss_dssp             SEEEEESSSTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999998853

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=100.00  E-value=2.7e-35  Score=255.41  Aligned_cols=170  Identities=15%  Similarity=0.122  Sum_probs=133.8

Q ss_pred             eEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CC
Q 025366           77 VVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PP  149 (254)
Q Consensus        77 ~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~  149 (254)
                      +++++||++.|+ +......+|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|...     ..
T Consensus         2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~~~~~~~~~~   78 (266)
T 2yz2_A            2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE---PTSGDVLYDGERKKGYEIRR   78 (266)
T ss_dssp             CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCHHHHGG
T ss_pred             EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCCcEEEECCEECchHHhhh
Confidence            589999999997 21000126799999999999999999999999999999999997   99999 6666432     22


Q ss_pred             CeEEEeeCCC-CCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC----CCCCCCCCChhhhhhHhhhhhhc
Q 025366          150 DVATVLPMDG-FHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ----GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       150 ~~g~~i~~~~-~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~----~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                      ..|+ +.++. ..++  .+++.+++.+..... .........+.++++.+++.    .+.++..|||||+||+++|+||+
T Consensus        79 ~i~~-v~q~~~~~~~--~~tv~enl~~~~~~~-~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~  154 (266)
T 2yz2_A           79 NIGI-AFQYPEDQFF--AERVFDEVAFAVKNF-YPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIV  154 (266)
T ss_dssp             GEEE-ECSSGGGGCC--CSSHHHHHHHTTTTT-CTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred             hEEE-EeccchhhcC--CCcHHHHHHHHHHhc-CCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHH
Confidence            3565 66653 2222  268888887643222 23333456778899998886    46778899999999999999999


Q ss_pred             CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|++|||||||++||+..++.+.++|.+
T Consensus       155 ~~p~lllLDEPts~LD~~~~~~l~~~l~~  183 (266)
T 2yz2_A          155 HEPDILILDEPLVGLDREGKTDLLRIVEK  183 (266)
T ss_dssp             TCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEcCccccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999998853

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=100.00  E-value=2.5e-35  Score=253.87  Aligned_cols=164  Identities=15%  Similarity=0.104  Sum_probs=131.0

Q ss_pred             ceEEEecceeecc-cccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE
Q 025366           76 PVVEARCMDEVYD-ALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (254)
Q Consensus        76 ~~l~i~~l~~~y~-~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~  154 (254)
                      ++|+++||++.|+ +.  .  +|+++||++++|++++|+||||||||||+|+|+|+++   |++|++..    ....++ 
T Consensus         3 ~~l~i~~l~~~y~~~~--~--vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~----~~~i~~-   70 (253)
T 2nq2_C            3 KALSVENLGFYYQAEN--F--LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHR---PIQGKIEV----YQSIGF-   70 (253)
T ss_dssp             EEEEEEEEEEEETTTT--E--EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSC---CSEEEEEE----CSCEEE-
T ss_pred             ceEEEeeEEEEeCCCC--e--EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEE----eccEEE-
Confidence            4799999999998 53  3  5699999999999999999999999999999999997   99998431    234565 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHc-CC---CCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARR-GA---PWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~-g~---~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      +.++...++  .+++.+++.+..... +.   ........+.++++.+++.  .+.++.+|||||+||+++|+||+.+|+
T Consensus        71 v~q~~~~~~--~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~  148 (253)
T 2nq2_C           71 VPQFFSSPF--AYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK  148 (253)
T ss_dssp             ECSCCCCSS--CCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred             EcCCCccCC--CCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence            666543332  268888887643211 21   1222345677888888876  467788999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|||||||++||+..++.+.+++.+
T Consensus       149 lllLDEPts~LD~~~~~~l~~~l~~  173 (253)
T 2nq2_C          149 LILLDEPTSALDLANQDIVLSLLID  173 (253)
T ss_dssp             EEEESSSSTTSCHHHHHHHHHHHHH
T ss_pred             EEEEeCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998853

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=100.00  E-value=3.2e-35  Score=252.77  Aligned_cols=169  Identities=18%  Similarity=0.071  Sum_probs=125.8

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCce-ecCCCCCC---
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKAS-SFDSQVKP---  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~-~~~~~~~~---  148 (254)
                      |++++++||++.|++.  .  +|+++||++++|++++|+||||||||||+|+|+|+  ++   |++|+ .++|....   
T Consensus         1 M~~l~~~~l~~~y~~~--~--vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~~~~~~   73 (250)
T 2d2e_A            1 MSQLEIRDLWASIDGE--T--ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYT---VERGEILLDGENILELS   73 (250)
T ss_dssp             -CEEEEEEEEEEETTE--E--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEECTTSC
T ss_pred             CceEEEEeEEEEECCE--E--EEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCceEEEECCEECCCCC
Confidence            4579999999999863  3  66999999999999999999999999999999998  55   89999 66664321   


Q ss_pred             ------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH-cCCCC--CccHHHHHHHHHhhccC---CCCCCCC-CChhhhh
Q 025366          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR-RGAPW--TFNPLLLLNCLKNLRNQ---GSVYAPS-FDHGVGD  215 (254)
Q Consensus       149 ------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~-~g~~~--~~~~~~~~~~l~~l~l~---~~~~~~~-lS~G~~q  215 (254)
                            ...+. +.++...+  +.+++.+++.+.... .+...  ......+.++++.+++.   .+.++.+ |||||||
T Consensus        74 ~~~~~~~~i~~-v~q~~~~~--~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQ  150 (250)
T 2d2e_A           74 PDERARKGLFL-AFQYPVEV--PGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKK  150 (250)
T ss_dssp             HHHHHHTTBCC-CCCCCC-C--CSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHH
T ss_pred             HHHHHhCcEEE-eccCCccc--cCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHH
Confidence                  11232 44544322  236888888764422 22211  11234567888888873   4667788 9999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++|+||+.+|++|||||||++||+..++.+.++|.+
T Consensus       151 rv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~  188 (250)
T 2d2e_A          151 RNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNA  188 (250)
T ss_dssp             HHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998853

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=100.00  E-value=3e-35  Score=251.47  Aligned_cols=162  Identities=11%  Similarity=0.058  Sum_probs=127.5

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~  149 (254)
                      |++++||++.|++      +++++||++++ ++++|+||||||||||+|+|+|+++   |++|+ .++|...      ..
T Consensus         1 ml~~~~l~~~y~~------~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~   70 (240)
T 2onk_A            1 MFLKVRAEKRLGN------FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERR   70 (240)
T ss_dssp             CCEEEEEEEEETT------EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTS
T ss_pred             CEEEEEEEEEeCC------EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEECCEECCcCchhhC
Confidence            3789999999975      36999999999 9999999999999999999999997   99999 5666321      12


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                      ..|+ +.++...+  +.+++.+++.+.....+.  ......+.++++.+++.  .+.++.+|||||+||+++|+|++.+|
T Consensus        71 ~i~~-v~q~~~l~--~~ltv~enl~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p  145 (240)
T 2onk_A           71 GIGF-VPQDYALF--PHLSVYRNIAYGLRNVER--VERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQP  145 (240)
T ss_dssp             CCBC-CCSSCCCC--TTSCHHHHHHTTCTTSCH--HHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred             cEEE-EcCCCccC--CCCcHHHHHHHHHHHcCC--chHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCC
Confidence            3454 55554322  236888887653211111  11235567888888876  46678899999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|||||||++||+..++.+.+++.+
T Consensus       146 ~lllLDEPts~LD~~~~~~~~~~l~~  171 (240)
T 2onk_A          146 RLLLLDEPLSAVDLKTKGVLMEELRF  171 (240)
T ss_dssp             SSBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred             CEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999998853

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=100.00  E-value=2.1e-34  Score=249.95  Aligned_cols=169  Identities=16%  Similarity=0.084  Sum_probs=128.4

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCce-ecCCCCCC---
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKP---  148 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll--~~~~p~~G~-~~~~~~~~---  148 (254)
                      +++|+++||++.|++.  .  +|+++||++++|++++|+||||||||||+|+|+|++  +   |++|+ .++|....   
T Consensus        18 ~~~l~~~~l~~~y~~~--~--vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~---p~~G~I~~~g~~i~~~~   90 (267)
T 2zu0_C           18 SHMLSIKDLHVSVEDK--A--ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYE---VTGGTVEFKGKDLLALS   90 (267)
T ss_dssp             --CEEEEEEEEEETTE--E--EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCE---EEEEEEEETTEEGGGSC
T ss_pred             CceEEEEeEEEEECCE--E--EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCC---CCCeEEEECCEECCcCC
Confidence            4579999999999763  2  669999999999999999999999999999999984  4   88999 66664221   


Q ss_pred             ------CCeEEEeeCCCCCCCCcCCChhhcHHHHHHH----cCCCC---CccHHHHHHHHHhhccC---CCCCCC-CCCh
Q 025366          149 ------PDVATVLPMDGFHLYLSQLDAMEDPKEAHAR----RGAPW---TFNPLLLLNCLKNLRNQ---GSVYAP-SFDH  211 (254)
Q Consensus       149 ------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~----~g~~~---~~~~~~~~~~l~~l~l~---~~~~~~-~lS~  211 (254)
                            ...++ +.++...+.  .+++.+++.+....    .+...   ......+.++++.+++.   .+.++. .|||
T Consensus        91 ~~~~~~~~i~~-v~Q~~~l~~--~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSg  167 (267)
T 2zu0_C           91 PEDRAGEGIFM-AFQYPVEIP--GVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSG  167 (267)
T ss_dssp             HHHHHHHTEEE-ECSSCCCCT--TCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCH
T ss_pred             HHHHhhCCEEE-EccCccccc--cccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCH
Confidence                  12344 556543322  36777877654311    22211   11134567888888884   245665 5999


Q ss_pred             hhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          212 GVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       212 G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||+++|+||+.+|+||||||||++||+..++.+.++|.+
T Consensus       168 Gq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~  209 (267)
T 2zu0_C          168 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNS  209 (267)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=1.5e-33  Score=243.95  Aligned_cols=164  Identities=16%  Similarity=0.138  Sum_probs=130.5

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-----CCC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-----PPD  150 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-----~~~  150 (254)
                      |++++||++.|++......+|+++||+++ |++++|+||||||||||+|+|+|++    |++|+ .++|...     ...
T Consensus         1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~----p~~G~I~~~g~~~~~~~~~~~   75 (263)
T 2pjz_A            1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL----PYSGNIFINGMEVRKIRNYIR   75 (263)
T ss_dssp             CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS----CCEEEEEETTEEGGGCSCCTT
T ss_pred             CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC----CCCcEEEECCEECcchHHhhh
Confidence            48899999999751000116799999999 9999999999999999999999997    89999 5666321     223


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                      .+.++.++...    .+++.+++.+.....    ......+.++++.+++.   .+.++.+||+|||||+++|+||+.+|
T Consensus        76 i~~~v~Q~~~l----~~tv~enl~~~~~~~----~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p  147 (263)
T 2pjz_A           76 YSTNLPEAYEI----GVTVNDIVYLYEELK----GLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQP  147 (263)
T ss_dssp             EEECCGGGSCT----TSBHHHHHHHHHHHT----CCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred             eEEEeCCCCcc----CCcHHHHHHHhhhhc----chHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCC
Confidence            45125555433    378999987754332    23356678889988886   46778899999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|||||||++||+..++.+.+++.+
T Consensus       148 ~lllLDEPts~LD~~~~~~l~~~L~~  173 (263)
T 2pjz_A          148 EIVGLDEPFENVDAARRHVISRYIKE  173 (263)
T ss_dssp             SEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             CEEEEECCccccCHHHHHHHHHHHHH
Confidence            99999999999999999999998864

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=241.18  Aligned_cols=159  Identities=13%  Similarity=0.122  Sum_probs=119.9

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (254)
                      |.+++++||++.|++..+.  +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|     ..++
T Consensus         1 M~~l~~~~l~~~y~~~~~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g-----~i~~   70 (237)
T 2cbz_A            1 MNSITVRNATFTWARSDPP--TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMD---KVEGHVAIKG-----SVAY   70 (237)
T ss_dssp             -CCEEEEEEEEESCTTSCC--SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSE---EEEEEEEECS-----CEEE
T ss_pred             CCeEEEEEEEEEeCCCCCc--eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCceEEECC-----EEEE
Confidence            4479999999999731122  6799999999999999999999999999999999998   99999 5665     2555


Q ss_pred             EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHH---HHhhccC-------CCCCCCCCChhhhhhHhhhhhh
Q 025366          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNC---LKNLRNQ-------GSVYAPSFDHGVGDPVEDDILV  223 (254)
Q Consensus       154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~---l~~l~l~-------~~~~~~~lS~G~~qrv~ia~al  223 (254)
                       +.++.. ++  .+++.+++.+..   ... ........+.   .+.++..       ...++..|||||+||+++|+||
T Consensus        71 -v~Q~~~-~~--~~tv~enl~~~~---~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL  142 (237)
T 2cbz_A           71 -VPQQAW-IQ--NDSLRENILFGC---QLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAV  142 (237)
T ss_dssp             -ECSSCC-CC--SEEHHHHHHTTS---CCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHH
T ss_pred             -EcCCCc-CC--CcCHHHHhhCcc---ccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHH
Confidence             666653 22  267888775421   111 1111222221   2222221       2456789999999999999999


Q ss_pred             cCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          224 GLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       224 ~~~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      +.+|++|||||||++||+..++.+.+++
T Consensus       143 ~~~p~lllLDEPts~LD~~~~~~i~~~l  170 (237)
T 2cbz_A          143 YSNADIYLFDDPLSAVDAHVGKHIFENV  170 (237)
T ss_dssp             HHCCSEEEEESTTTTSCHHHHHHHHHHT
T ss_pred             hcCCCEEEEeCcccccCHHHHHHHHHHH
Confidence            9999999999999999999999999988

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=100.00  E-value=2.6e-33  Score=240.43  Aligned_cols=162  Identities=15%  Similarity=0.132  Sum_probs=123.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      -++++||++.|++....  +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|....       
T Consensus         7 ~~~~~~l~~~y~~~~~~--vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~I~i~g~~~~~~~~~~~   81 (247)
T 2ff7_A            7 DITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNWL   81 (247)
T ss_dssp             EEEEEEEEEESSTTSCE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred             ceeEEEEEEEeCCCCcc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHHH
Confidence            48899999999311122  5699999999999999999999999999999999998   99999 67764321       


Q ss_pred             -CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhhh
Q 025366          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVG  214 (254)
Q Consensus       149 -~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~  214 (254)
                       ...++ +.++... +.  .++.+++.+.     .. ......+.++++.+++.             ....+..|||||+
T Consensus        82 ~~~i~~-v~Q~~~l-~~--~tv~enl~~~-----~~-~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~  151 (247)
T 2ff7_A           82 RRQVGV-VLQDNVL-LN--RSIIDNISLA-----NP-GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQR  151 (247)
T ss_dssp             HHHEEE-ECSSCCC-TT--SBHHHHHTTT-----CT-TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHH
T ss_pred             HhcEEE-EeCCCcc-cc--ccHHHHHhcc-----CC-CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHH
Confidence             12454 6665543 22  4777776542     11 12234455555555442             2235679999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|+||+.+|++|||||||++||+..++.+.++|.+
T Consensus       152 qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~  190 (247)
T 2ff7_A          152 QRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK  190 (247)
T ss_dssp             HHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998853

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=100.00  E-value=2e-33  Score=240.57  Aligned_cols=161  Identities=19%  Similarity=0.176  Sum_probs=124.0

Q ss_pred             eEEEecceeec-ccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           77 VVEARCMDEVY-DALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        77 ~l~i~~l~~~y-~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      +++++||++.| ++..    +|+++||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus         1 ml~~~~l~~~y~~~~~----vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~   73 (243)
T 1mv5_A            1 MLSARHVDFAYDDSEQ----ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLEN   73 (243)
T ss_dssp             CEEEEEEEECSSSSSC----SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSC
T ss_pred             CEEEEEEEEEeCCCCc----eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence            48899999999 4422    6799999999999999999999999999999999998   99999 5666321       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCC-------------CCCCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-------------VYAPSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~-------------~~~~~lS~G~  213 (254)
                       ....++ +.++... +.  .++.+++.+     +.........+.++++.+++...             ..+..|||||
T Consensus        74 ~~~~i~~-v~q~~~l-~~--~tv~enl~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq  144 (243)
T 1mv5_A           74 WRSQIGF-VSQDSAI-MA--GTIRENLTY-----GLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQ  144 (243)
T ss_dssp             CTTTCCE-ECCSSCC-CC--EEHHHHTTS-----CTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHH
T ss_pred             HHhhEEE-EcCCCcc-cc--ccHHHHHhh-----hccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHH
Confidence             223555 5665433 22  366666543     21112234556777777766421             2356999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|+|++.+|++|||||||++||+..++.+.+++.+
T Consensus       145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~  184 (243)
T 1mv5_A          145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS  184 (243)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988753

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=100.00  E-value=5.8e-34  Score=247.66  Aligned_cols=168  Identities=17%  Similarity=0.142  Sum_probs=124.7

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      .+|+++||++.|++... ..+|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|....      
T Consensus        15 ~~l~~~~l~~~y~~~~~-~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~---p~~G~I~~~g~~i~~~~~~~   90 (271)
T 2ixe_A           15 GLVKFQDVSFAYPNHPN-VQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ---PTGGKVLLDGEPLVQYDHHY   90 (271)
T ss_dssp             CCEEEEEEEECCTTCTT-SCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHH
T ss_pred             ceEEEEEEEEEeCCCCC-ceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEcccCCHHH
Confidence            46999999999975100 116799999999999999999999999999999999997   99999 66764221      


Q ss_pred             --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccH------HHHHHHHHhh--ccC--CCCCCCCCChhhhhh
Q 025366          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNP------LLLLNCLKNL--RNQ--GSVYAPSFDHGVGDP  216 (254)
Q Consensus       149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~------~~~~~~l~~l--~l~--~~~~~~~lS~G~~qr  216 (254)
                        ...++ +.++... +.  .++.+++.+...  ........      ..+.++++.+  ++.  .+.++..|||||+||
T Consensus        91 ~~~~i~~-v~Q~~~l-~~--~tv~enl~~~~~--~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QR  164 (271)
T 2ixe_A           91 LHTQVAA-VGQEPLL-FG--RSFRENIAYGLT--RTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQA  164 (271)
T ss_dssp             HHHHEEE-ECSSCCC-CS--SBHHHHHHTTCS--SCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHH
T ss_pred             HhccEEE-EecCCcc-cc--ccHHHHHhhhcc--cCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHH
Confidence              12454 6666543 22  478887754211  11110000      1123445554  332  456778999999999


Q ss_pred             HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          217 VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       217 v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++|+||+.+|+||||||||++||+..++.+.++|.+
T Consensus       165 v~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~  201 (271)
T 2ixe_A          165 VALARALIRKPRLLILDNATSALDAGNQLRVQRLLYE  201 (271)
T ss_dssp             HHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998854

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=100.00  E-value=2.8e-32  Score=231.50  Aligned_cols=155  Identities=12%  Similarity=0.129  Sum_probs=117.0

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (254)
                      .+++++||++.|++..+.  +|+++||++++|++++|+||||||||||+|+|+|+++   |++|+ .++|     ..++ 
T Consensus         5 ~~l~~~~l~~~y~~~~~~--il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g-----~i~~-   73 (229)
T 2pze_A            5 TEVVMENVTAFWEEGGTP--VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF-   73 (229)
T ss_dssp             EEEEEEEEEECSSTTSCC--SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEECS-----CEEE-
T ss_pred             ceEEEEEEEEEeCCCCce--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc---CCccEEEECC-----EEEE-
Confidence            479999999999631122  6799999999999999999999999999999999997   99999 5665     3554 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhhhhhHhhhh
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~qrv~ia~  221 (254)
                      +.++... +.  .++.+++.+     +...  ......+.++.+++.             ....+..||+|||||+++|+
T Consensus        74 v~q~~~~-~~--~tv~enl~~-----~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr  143 (229)
T 2pze_A           74 CSQFSWI-MP--GTIKENIIF-----GVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR  143 (229)
T ss_dssp             ECSSCCC-CS--BCHHHHHHT-----TSCC--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred             EecCCcc-cC--CCHHHHhhc-----cCCc--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence            6665543 22  377777654     2111  112222233322221             12245799999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      |++.+|++|||||||++||+..++.+.+++
T Consensus       144 al~~~p~lllLDEPts~LD~~~~~~i~~~l  173 (229)
T 2pze_A          144 AVYKDADLYLLDSPFGYLDVLTEKEIFESC  173 (229)
T ss_dssp             HHHSCCSEEEEESTTTTSCHHHHHHHHHHC
T ss_pred             HHhcCCCEEEEECcccCCCHHHHHHHHHHH
Confidence            999999999999999999999999999863

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=99.98  E-value=2.1e-32  Score=235.02  Aligned_cols=158  Identities=19%  Similarity=0.130  Sum_probs=126.5

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ++++++||++.    .    +|+++||++++|++++|+||||||||||+|+|+|+++   |+ |+ .++|....      
T Consensus         3 ~~l~~~~l~~~----~----vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~---p~-G~i~~~g~~~~~~~~~~   70 (249)
T 2qi9_C            3 IVMQLQDVAES----T----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTS---GK-GSIQFAGQPLEAWSATK   70 (249)
T ss_dssp             EEEEEEEEEET----T----TEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CE-EEEEETTEEGGGSCHHH
T ss_pred             cEEEEEceEEE----E----EEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CC-eEEEECCEECCcCCHHH
Confidence            36999999987    2    6799999999999999999999999999999999997   99 99 66664221      


Q ss_pred             --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                        ...++ +.++...+.  .+++.+++.+..    ... .....+.++++.+++.  .+.++..|||||+||+++|+||+
T Consensus        71 ~~~~i~~-v~q~~~~~~--~~tv~e~l~~~~----~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~  142 (249)
T 2qi9_C           71 LALHRAY-LSQQQTPPF--ATPVWHYLTLHQ----HDK-TRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVL  142 (249)
T ss_dssp             HHHHEEE-ECSCCCCCT--TCBHHHHHHTTC----SST-TCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred             HhceEEE-ECCCCccCC--CCcHHHHHHHhh----ccC-CcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence              12454 666544322  368888775421    111 1256678888888876  46778899999999999999999


Q ss_pred             CCCc-------EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          225 LQHK-------VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~-------vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+|+       +|||||||++||+..++.+.+++.+
T Consensus       143 ~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~  178 (249)
T 2qi9_C          143 QITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA  178 (249)
T ss_dssp             HHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred             cCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999       9999999999999999999998853

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=99.97  E-value=1.8e-32  Score=241.73  Aligned_cols=162  Identities=14%  Similarity=0.106  Sum_probs=124.9

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ..|+++||++.|++. ..  +|+|+||+|++|++++|+||||||||||+++|+|++.   |++|+ .++|....      
T Consensus        52 ~~i~~~~vs~~y~~~-~~--vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~G~~i~~~~~~~  125 (306)
T 3nh6_A           52 GRIEFENVHFSYADG-RE--TLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYD---ISSGCIRIDGQDISQVTQAS  125 (306)
T ss_dssp             CCEEEEEEEEESSTT-CE--EEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSC---CSEEEEEETTEETTSBCHHH
T ss_pred             CeEEEEEEEEEcCCC-Cc--eeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCC---CCCcEEEECCEEcccCCHHH
Confidence            359999999999642 22  5699999999999999999999999999999999998   99999 67774321      


Q ss_pred             --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhh
Q 025366          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV  213 (254)
Q Consensus       149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~  213 (254)
                        ...++ +.++...+ .  .++.+|+.+     +... .....+.++++.+++.             .......|||||
T Consensus       126 ~r~~i~~-v~Q~~~lf-~--~Tv~eNi~~-----~~~~-~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGq  195 (306)
T 3nh6_A          126 LRSHIGV-VPQDTVLF-N--DTIADNIRY-----GRVT-AGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE  195 (306)
T ss_dssp             HHHTEEE-ECSSCCCC-S--EEHHHHHHT-----TSTT-CCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHH
T ss_pred             HhcceEE-EecCCccC-c--ccHHHHHHh-----hccc-CCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHH
Confidence              23565 77776443 2  478887754     2211 2234444555444332             123456899999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||++|||||+.+|+||||||||++||+.....|.++|.+
T Consensus       196 rQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~  235 (306)
T 3nh6_A          196 KQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK  235 (306)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988853

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=99.97  E-value=2.4e-32  Score=236.14  Aligned_cols=163  Identities=13%  Similarity=0.038  Sum_probs=123.1

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      .+|+++||++.|++.. ...+|+++||++++|++++|+||||||||||+|+|+|+++   | +|+ .++|...       
T Consensus        16 ~~l~i~~l~~~y~~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~---~-~G~I~i~g~~i~~~~~~~   90 (260)
T 2ghi_A           16 VNIEFSDVNFSYPKQT-NHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD---A-EGDIKIGGKNVNKYNRNS   90 (260)
T ss_dssp             CCEEEEEEEECCTTCC-SSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---C-EEEEEETTEEGGGBCHHH
T ss_pred             CeEEEEEEEEEeCCCC-cCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCC---C-CeEEEECCEEhhhcCHHH
Confidence            4699999999997631 1126799999999999999999999999999999999995   5 899 5666321       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~  213 (254)
                       ....++ +.++...+ .  .++.+++.+.     ... .....+.++++.+++.             ...++..|||||
T Consensus        91 ~~~~i~~-v~Q~~~l~-~--~tv~enl~~~-----~~~-~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGq  160 (260)
T 2ghi_A           91 IRSIIGI-VPQDTILF-N--ETIKYNILYG-----KLD-ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGE  160 (260)
T ss_dssp             HHTTEEE-ECSSCCCC-S--EEHHHHHHTT-----CTT-CCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHH
T ss_pred             HhccEEE-EcCCCccc-c--cCHHHHHhcc-----CCC-CCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHH
Confidence             134565 66665432 2  4777777542     111 1233445555544431             124567999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+++|+|++.+|+||||||||++||+..++.+.++|.+
T Consensus       161 kqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~  200 (260)
T 2ghi_A          161 RQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVED  200 (260)
T ss_dssp             HHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998853

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=99.97  E-value=2.8e-32  Score=247.69  Aligned_cols=161  Identities=14%  Similarity=0.159  Sum_probs=126.3

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ..|+++||+|.|+.....  +|+++||+|++||+++|+||||||||||+|+|+|++    +++|+ .++|....      
T Consensus        18 ~~i~~~~l~~~y~~~~~~--~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~----~~~G~I~i~G~~i~~~~~~~   91 (390)
T 3gd7_A           18 GQMTVKDLTAKYTEGGNA--ILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLL----NTEGEIQIDGVSWDSITLEQ   91 (390)
T ss_dssp             CCEEEEEEEEESSSSSCC--SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCS----EEEEEEEESSCBTTSSCHHH
T ss_pred             CeEEEEEEEEEecCCCeE--EeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCC----CCCeEEEECCEECCcCChHH
Confidence            469999999999431122  679999999999999999999999999999999998    67899 67774321      


Q ss_pred             --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCC-----------CChhh
Q 025366          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPS-----------FDHGV  213 (254)
Q Consensus       149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~-----------lS~G~  213 (254)
                        ...+. +.++... +.  .++.+|+.       .........+.++++.+++.  .+.++..           |||||
T Consensus        92 ~rr~ig~-v~Q~~~l-f~--~tv~enl~-------~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGq  160 (390)
T 3gd7_A           92 WRKAFGV-IPQKVFI-FS--GTFRKNLD-------PNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGH  160 (390)
T ss_dssp             HHHTEEE-ESCCCCC-CS--EEHHHHHC-------TTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHH
T ss_pred             HhCCEEE-EcCCccc-Cc--cCHHHHhh-------hccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHH
Confidence              23454 6665433 32  46666553       12223456677888888775  3555555           99999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||++|||||+.+|+||||||||++||+..+.+++++|.+
T Consensus       161 rQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~  200 (390)
T 3gd7_A          161 KQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQ  200 (390)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=99.96  E-value=6e-30  Score=224.23  Aligned_cols=150  Identities=11%  Similarity=0.139  Sum_probs=102.6

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (254)
                      ++++++||++.+.  .    +++++||+|++|++++|+||||||||||+|+|+|+++   |++|+ .++|     ..++ 
T Consensus        39 ~~l~~~~l~~~~~--~----vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~~g-----~i~~-  103 (290)
T 2bbs_A           39 DSLSFSNFSLLGT--P----VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE---PSEGKIKHSG-----RISF-  103 (290)
T ss_dssp             -----------CC--C----SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSC---EEEEEEECCS-----CEEE-
T ss_pred             ceEEEEEEEEcCc--e----EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCcEEEECC-----EEEE-
Confidence            4699999998642  2    6799999999999999999999999999999999997   99999 5555     3554 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhhhhhHhhhh
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~qrv~ia~  221 (254)
                      +.++... +.  .++.+++.      +...  ........++.+++.             ....+..|||||+||+++|+
T Consensus       104 v~Q~~~l-~~--~tv~enl~------~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAr  172 (290)
T 2bbs_A          104 CSQNSWI-MP--GTIKENII------GVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR  172 (290)
T ss_dssp             ECSSCCC-CS--SBHHHHHH------TTCC--CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHH
T ss_pred             EeCCCcc-Cc--ccHHHHhh------Cccc--chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHH
Confidence            6665433 22  37777664      1111  111222233322221             11235799999999999999


Q ss_pred             hhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          222 LVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       222 al~~~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      |++.+|++|||||||++||+..+..+.+++
T Consensus       173 aL~~~p~lllLDEPts~LD~~~~~~i~~~l  202 (290)
T 2bbs_A          173 AVYKDADLYLLDSPFGYLDVLTEKEIFESC  202 (290)
T ss_dssp             HHHSCCSEEEEESTTTTCCHHHHHHHHHHC
T ss_pred             HHHCCCCEEEEECCcccCCHHHHHHHHHHH
Confidence            999999999999999999999999999863

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=99.96  E-value=9.4e-30  Score=242.64  Aligned_cols=164  Identities=16%  Similarity=0.142  Sum_probs=127.7

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..++++||++.|++..+.  +|+|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus       340 ~~i~~~~v~~~y~~~~~~--~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~  414 (582)
T 3b5x_A          340 GEVDVKDVTFTYQGKEKP--ALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYD---VDSGSICLDGHDVRDYKLTN  414 (582)
T ss_pred             CeEEEEEEEEEcCCCCcc--ccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECCEEhhhCCHHH
Confidence            469999999999752122  6799999999999999999999999999999999998   99999 6777422       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC-------------CCCCCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------------SVYAPSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-------------~~~~~~lS~G~  213 (254)
                       +...+. +.++...+.   .++.+|+.+...    + ..+.+++.++++.+++..             ......|||||
T Consensus       415 ~~~~i~~-v~Q~~~l~~---~tv~eni~~~~~----~-~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq  485 (582)
T 3b5x_A          415 LRRHFAL-VSQNVHLFN---DTIANNIAYAAE----G-EYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ  485 (582)
T ss_pred             HhcCeEE-EcCCCcccc---ccHHHHHhccCC----C-CCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence             234554 677664332   478887754210    1 233455666676665431             12346899999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||+++|||++.+|++|||||||++||+...+.+.+.+++
T Consensus       486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~  525 (582)
T 3b5x_A          486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDE  525 (582)
T ss_pred             HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998864

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=99.96  E-value=1.7e-29  Score=240.92  Aligned_cols=164  Identities=15%  Similarity=0.116  Sum_probs=128.0

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      ..++++||++.|++..+.  +|+|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|....      
T Consensus       340 ~~i~~~~v~~~y~~~~~~--~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~---p~~G~i~~~g~~~~~~~~~~  414 (582)
T 3b60_A          340 GDLEFRNVTFTYPGREVP--ALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLAS  414 (582)
T ss_dssp             CCEEEEEEEECSSSSSCC--SEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHH
T ss_pred             CcEEEEEEEEEcCCCCCc--cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccC---CCCCeEEECCEEccccCHHH
Confidence            359999999999742112  6799999999999999999999999999999999998   99999 67774321      


Q ss_pred             --CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhh
Q 025366          149 --PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGV  213 (254)
Q Consensus       149 --~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~  213 (254)
                        ...+. +.++...+.   .++.+|+.+..    .+ ..+.+++.++++.+++.             .......|||||
T Consensus       415 ~~~~i~~-v~Q~~~l~~---~tv~eni~~~~----~~-~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq  485 (582)
T 3b60_A          415 LRNQVAL-VSQNVHLFN---DTVANNIAYAR----TE-EYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQ  485 (582)
T ss_dssp             HHHTEEE-ECSSCCCCS---SBHHHHHHTTT----TS-CCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHH
T ss_pred             HHhhCeE-EccCCcCCC---CCHHHHHhccC----CC-CCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHH
Confidence              23565 777765432   47888775421    01 23345666677665542             123457899999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||+++|||++.+|++|||||||++||+...+.+.+.+++
T Consensus       486 ~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~  525 (582)
T 3b60_A          486 RQRIAIARALLRDSPILILDEATSALDTESERAIQAALDE  525 (582)
T ss_dssp             HHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998854

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=99.96  E-value=1.9e-29  Score=240.31  Aligned_cols=162  Identities=14%  Similarity=0.088  Sum_probs=124.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..++++||++.|++....  +|+|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus       338 ~~i~~~~v~~~y~~~~~~--~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~~~~~~~~~  412 (578)
T 4a82_A          338 GRIDIDHVSFQYNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGS  412 (578)
T ss_dssp             CCEEEEEEEECSCSSSCC--SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHH
T ss_pred             CeEEEEEEEEEcCCCCCc--ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCC---CCCcEEEECCEEhhhCCHHH
Confidence            359999999999763222  6699999999999999999999999999999999998   99999 6777432       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------C----CCCCCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------G----SVYAPSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~----~~~~~~lS~G~  213 (254)
                       +...+. +.++...+.   .++.||+.+     +.+. ...+.+.+.++..++.         .    ......|||||
T Consensus       413 ~r~~i~~-v~Q~~~l~~---~tv~eni~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq  482 (578)
T 4a82_A          413 LRNQIGL-VQQDNILFS---DTVKENILL-----GRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQ  482 (578)
T ss_dssp             HHHTEEE-ECSSCCCCS---SBHHHHHGG-----GCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHH
T ss_pred             HhhheEE-EeCCCccCc---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHH
Confidence             124565 777765432   377777643     2222 2334555555544332         1    12345899999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      |||+++|||++.+|++|||||||++||+...+.+.+.++
T Consensus       483 ~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~  521 (578)
T 4a82_A          483 KQRLSIARIFLNNPPILILDEATSALDLESESIIQEALD  521 (578)
T ss_dssp             HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998875

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.96  E-value=3.3e-29  Score=239.01  Aligned_cols=163  Identities=18%  Similarity=0.118  Sum_probs=124.5

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..++++||++.|++..+.  +|+|+||++++||+++|+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus       340 ~~i~~~~v~~~y~~~~~~--~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~---~~~G~i~i~g~~i~~~~~~~  414 (587)
T 3qf4_A          340 GSVSFENVEFRYFENTDP--VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLID---PERGRVEVDELDVRTVKLKD  414 (587)
T ss_dssp             CCEEEEEEEECSSSSSCC--SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSC---CSEEEEEESSSBGGGBCHHH
T ss_pred             CcEEEEEEEEEcCCCCCc--ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc---CCCcEEEECCEEcccCCHHH
Confidence            359999999999653223  6699999999999999999999999999999999998   99999 6777532       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------C----CCCCCCCCChhh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGV  213 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~lS~G~  213 (254)
                       +...+. ++++...+.   .++.||+.+     +.+. ...+...+.++..++         +    .......|||||
T Consensus       415 ~r~~i~~-v~Q~~~lf~---~tv~eni~~-----~~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGq  484 (587)
T 3qf4_A          415 LRGHISA-VPQETVLFS---GTIKENLKW-----GRED-ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQ  484 (587)
T ss_dssp             HHHHEEE-ECSSCCCCS---EEHHHHHTT-----TCSS-CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHH
T ss_pred             HHhheEE-ECCCCcCcC---ccHHHHHhc-----cCCC-CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHH
Confidence             123454 777765432   367776643     2221 233444444443322         1    234567999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||+++|||++.+|++|||||||++||+...+++.+.+++
T Consensus       485 rQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~  524 (587)
T 3qf4_A          485 KQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKR  524 (587)
T ss_dssp             HHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998753

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.96  E-value=1.5e-28  Score=231.88  Aligned_cols=161  Identities=14%  Similarity=0.112  Sum_probs=123.9

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (254)
                      .++++++++++.|++.     .+..+||++++||++||+||||||||||+|+|+|+++   |++|+ .+.+    ...+.
T Consensus       267 ~~~l~~~~l~~~~~~~-----~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~---p~~G~i~~~~----~~i~~  334 (538)
T 3ozx_A          267 KTKMKWTKIIKKLGDF-----QLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT---ADEGSVTPEK----QILSY  334 (538)
T ss_dssp             CEEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC---CSBCCEESSC----CCEEE
T ss_pred             cceEEEcceEEEECCE-----EEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCcEEEECC----eeeEe
Confidence            3579999999999872     3577899999999999999999999999999999998   99999 4443    23444


Q ss_pred             EeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366          154 VLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (254)
Q Consensus       154 ~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlI  231 (254)
                       +.++-...  ...++.+++....  .... ........++++.+++.  .+.++.+|||||+|||+||+||+.+|+|||
T Consensus       335 -~~q~~~~~--~~~tv~~~l~~~~--~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLl  408 (538)
T 3ozx_A          335 -KPQRIFPN--YDGTVQQYLENAS--KDAL-STSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYV  408 (538)
T ss_dssp             -ECSSCCCC--CSSBHHHHHHHHC--SSTT-CTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEE
T ss_pred             -echhcccc--cCCCHHHHHHHhh--hhcc-chhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence             45443221  1257777665421  1111 11223456677777665  567888999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHhhc
Q 025366          232 VDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       232 lDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||++||+..+.++.++|.+
T Consensus       409 LDEPT~gLD~~~~~~i~~~l~~  430 (538)
T 3ozx_A          409 LDQPSSYLDVEERYIVAKAIKR  430 (538)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHH
T ss_pred             EeCCccCCCHHHHHHHHHHHHH
Confidence            9999999999999999998853

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=99.96  E-value=2.5e-29  Score=240.39  Aligned_cols=161  Identities=16%  Similarity=0.143  Sum_probs=122.6

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .++++||++.|++. +.  +|+|+||++++|++++|+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus       354 ~i~~~~v~~~y~~~-~~--~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~---p~~G~i~~~g~~i~~~~~~~~  427 (598)
T 3qf4_B          354 EIEFKNVWFSYDKK-KP--VLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD---VDRGQILVDGIDIRKIKRSSL  427 (598)
T ss_dssp             CEEEEEEECCSSSS-SC--SCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             eEEEEEEEEECCCC-Cc--cccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCeEEEECCEEhhhCCHHHH
Confidence            59999999999752 22  6799999999999999999999999999999999998   99999 6777432        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~  214 (254)
                      +...+. +.++...+.   .++.+|+.+     +.+. .+.+.+.++++..++.         .+.    ....||||||
T Consensus       428 r~~i~~-v~Q~~~lf~---~tv~eni~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~  497 (598)
T 3qf4_B          428 RSSIGI-VLQDTILFS---TTVKENLKY-----GNPG-ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR  497 (598)
T ss_dssp             HHHEEE-ECTTCCCCS---SBHHHHHHS-----SSTT-CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred             HhceEE-EeCCCcccc---ccHHHHHhc-----CCCC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence            123554 777765432   478887753     2221 1223344444433332         111    1258999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|||++.+|++|||||||++||+...+.+.+.+.+
T Consensus       498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~  536 (598)
T 3qf4_B          498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWK  536 (598)
T ss_dssp             HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.95  E-value=3.1e-28  Score=232.61  Aligned_cols=158  Identities=16%  Similarity=0.097  Sum_probs=125.0

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (254)
                      ++++++++++.|++.     .+++++|++++||++||+||||||||||+|+|+|+++   |++|++..    ....++ +
T Consensus       356 ~~l~~~~l~~~~~~~-----~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~I~~----~~~i~~-v  422 (607)
T 3bk7_A          356 TLVEYPRLVKDYGSF-----KLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKVEW----DLTVAY-K  422 (607)
T ss_dssp             EEEEECCEEEECSSC-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBSCCCC----CCCEEE-E
T ss_pred             eEEEEeceEEEecce-----EEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCC---CCceEEEE----eeEEEE-E
Confidence            579999999999762     4689999999999999999999999999999999997   99998422    224565 6


Q ss_pred             eCCCCCCCCcCCChhhcHHHH-HHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEE
Q 025366          156 PMDGFHLYLSQLDAMEDPKEA-HARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIV  232 (254)
Q Consensus       156 ~~~~~~~~~~~l~~~e~~~~~-~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIl  232 (254)
                      .++....  ..+++.++.... ...+     .....+.++++.+++.  .+.++.+|||||+|||+||++|+.+|+||||
T Consensus       423 ~Q~~~~~--~~~tv~e~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlL  495 (607)
T 3bk7_A          423 PQYIKAE--YEGTVYELLSKIDSSKL-----NSNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLL  495 (607)
T ss_dssp             CSSCCCC--CSSBHHHHHHHHHHHHH-----HCHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             ecCccCC--CCCcHHHHHHhhhccCC-----CHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence            6654322  235776655432 1111     1234567788888875  4567889999999999999999999999999


Q ss_pred             eCCCCCCCHHHHHHHHHHhhc
Q 025366          233 DGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       233 DEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||++||+.++..+.++|.+
T Consensus       496 DEPt~~LD~~~~~~l~~~l~~  516 (607)
T 3bk7_A          496 DEPSAYLDVEQRLAVSRAIRH  516 (607)
T ss_dssp             ECTTTTCCHHHHHHHHHHHHH
T ss_pred             eCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999998853

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.95  E-value=4.1e-28  Score=229.14  Aligned_cols=159  Identities=16%  Similarity=0.083  Sum_probs=124.2

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (254)
                      ++++++++++.|++.     .+++++|++++||++||+||||||||||+|+|+|+++   |++|++..    ....++ +
T Consensus       286 ~~l~~~~l~~~~~~~-----~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~---p~~G~i~~----~~~i~~-v  352 (538)
T 1yqt_A          286 TLVTYPRLVKDYGSF-----RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE---PTEGKIEW----DLTVAY-K  352 (538)
T ss_dssp             EEEEECCEEEEETTE-----EEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC---CSBCCCCC----CCCEEE-E
T ss_pred             eEEEEeeEEEEECCE-----EEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEE----CceEEE-E
Confidence            579999999999762     4689999999999999999999999999999999997   99998432    224565 6


Q ss_pred             eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEe
Q 025366          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (254)
Q Consensus       156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlD  233 (254)
                      .++....  ..+++.++....... ...   ....+.++++.+++.  .+.++..||||||||+++|++|+.+|+|||||
T Consensus       353 ~Q~~~~~--~~~tv~~~~~~~~~~-~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLD  426 (538)
T 1yqt_A          353 PQYIKAD--YEGTVYELLSKIDAS-KLN---SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLD  426 (538)
T ss_dssp             CSSCCCC--CSSBHHHHHHHHHHH-HHT---CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEE
T ss_pred             ecCCcCC--CCCcHHHHHHhhhcc-CCC---HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEe
Confidence            6654332  235776655432111 111   234556777777764  46778899999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHhhc
Q 025366          234 GNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       234 Ep~~~lD~~~~~~l~~ll~~  253 (254)
                      |||++||+.++..+.++|.+
T Consensus       427 EPt~~LD~~~~~~i~~~l~~  446 (538)
T 1yqt_A          427 EPSAYLDVEQRLAVSRAIRH  446 (538)
T ss_dssp             CTTTTCCHHHHHHHHHHHHH
T ss_pred             CCcccCCHHHHHHHHHHHHH
Confidence            99999999999999998753

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=99.95  E-value=5.8e-28  Score=230.77  Aligned_cols=161  Identities=16%  Similarity=0.066  Sum_probs=116.0

Q ss_pred             ceEEE--------ecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee------
Q 025366           76 PVVEA--------RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------  141 (254)
Q Consensus        76 ~~l~i--------~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~------  141 (254)
                      .+|++        +||++.|++.  . .+++++| ++++|+++||+||||||||||+|+|+|+++   |++|+.      
T Consensus        82 ~~i~i~~l~~~~~~~ls~~yg~~--~-~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~---p~~G~~~~~~~~  154 (607)
T 3bk7_A           82 NAISIVNLPEQLDEDCVHRYGVN--A-FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI---PNLCEDNDSWDN  154 (607)
T ss_dssp             CCCEEEEECTTGGGSEEEECSTT--C-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC---CCTTTTCCCHHH
T ss_pred             ceEEEecCCccccCCeEEEECCC--C-eeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCC---CCCCccccccch
Confidence            35777        8999999763  1 2569999 999999999999999999999999999997   999982      


Q ss_pred             ----cCCCCC----------CCCeEEEeeCCCCCCCC-cCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCC
Q 025366          142 ----FDSQVK----------PPDVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSV  204 (254)
Q Consensus       142 ----~~~~~~----------~~~~g~~i~~~~~~~~~-~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~  204 (254)
                          +.|...          ....+. +.+.-..... ...++.+++..    ..     ....+.++++.+++.  .+.
T Consensus       155 ~~~~~~G~~~~~~~~~~~~~~~~i~~-~~q~~~~~~~~~~~tv~e~l~~----~~-----~~~~~~~~L~~lgL~~~~~~  224 (607)
T 3bk7_A          155 VIRAFRGNELQNYFERLKNGEIRPVV-KPQYVDLLPKAVKGKVRELLKK----VD-----EVGKFEEVVKELELENVLDR  224 (607)
T ss_dssp             HHHHTTTSTHHHHHHHHHHTSCCCEE-ECSCGGGGGGTCCSBHHHHHHH----TC-----CSSCHHHHHHHTTCTTGGGS
T ss_pred             hhheeCCEehhhhhhhhhhhhcceEE-eechhhhchhhccccHHHHhhh----hH-----HHHHHHHHHHHcCCCchhCC
Confidence                233211          011222 2111100000 00133333321    11     123456788888876  467


Q ss_pred             CCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       205 ~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.+|||||+||++||+||+.+|+||||||||++||+..+..+.++|.+
T Consensus       225 ~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~  273 (607)
T 3bk7_A          225 ELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRR  273 (607)
T ss_dssp             BGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             ChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            7889999999999999999999999999999999999999999988853

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=99.94  E-value=1.9e-27  Score=224.64  Aligned_cols=159  Identities=16%  Similarity=0.071  Sum_probs=111.9

Q ss_pred             EEE-ecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee----------cCCCC
Q 025366           78 VEA-RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS----------FDSQV  146 (254)
Q Consensus        78 l~i-~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~----------~~~~~  146 (254)
                      .++ +||++.|++.  . .+++++| ++++||++||+||||||||||+|+|+|+++   |++|+.          +.|..
T Consensus        21 ~~~~~~ls~~yg~~--~-~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~---p~~G~~~~~~~~~~~~~~g~~   93 (538)
T 1yqt_A           21 EQLEEDCVHRYGVN--A-FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI---PNLCGDNDSWDGVIRAFRGNE   93 (538)
T ss_dssp             ---CCCEEEECSTT--C-CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSHHHHHHHTTTST
T ss_pred             hhHhcCcEEEECCc--c-ccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCCccCcchhhhHHhhCCcc
Confidence            344 5899999863  1 2569999 999999999999999999999999999997   999982          23321


Q ss_pred             C----------CCCeEEEeeCCCCCCCC-cCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhh
Q 025366          147 K----------PPDVATVLPMDGFHLYL-SQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGV  213 (254)
Q Consensus       147 ~----------~~~~g~~i~~~~~~~~~-~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~  213 (254)
                      .          ....+. +.+.-..... ...++.+++..    ..     ....+.++++.+++.  .+.++.+|||||
T Consensus        94 ~~~~~~~~~~~~~~~~~-~~q~~~~~~~~~~~~v~e~~~~----~~-----~~~~~~~~l~~lgl~~~~~~~~~~LSgGe  163 (538)
T 1yqt_A           94 LQNYFEKLKNGEIRPVV-KPQYVDLIPKAVKGKVIELLKK----AD-----ETGKLEEVVKALELENVLEREIQHLSGGE  163 (538)
T ss_dssp             HHHHHHHHHTTSCCCEE-ECSCGGGSGGGCCSBHHHHHHH----HC-----SSSCHHHHHHHTTCTTTTTSBGGGCCHHH
T ss_pred             HHHHHHHHHHHhhhhhh-hhhhhhhcchhhhccHHHHHhh----hh-----HHHHHHHHHHHcCCChhhhCChhhCCHHH
Confidence            1          011222 2221110000 00123232211    11     113356788888875  466788999999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|||+||+||+.+|+||||||||++||+..++.+.++|.+
T Consensus       164 kQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~  203 (538)
T 1yqt_A          164 LQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRR  203 (538)
T ss_dssp             HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988853

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.94  E-value=3.3e-27  Score=242.59  Aligned_cols=164  Identities=16%  Similarity=0.130  Sum_probs=132.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .|+++||+++|++... ..+|+|+||+|++|+.+||+|+||||||||+++|.|++.   |++|+ .+||...        
T Consensus      1076 ~I~f~nVsf~Y~~~~~-~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~---p~~G~I~iDG~di~~i~~~~l 1151 (1321)
T 4f4c_A         1076 KVIFKNVRFAYPERPE-IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD---TLGGEIFIDGSEIKTLNPEHT 1151 (1321)
T ss_dssp             CEEEEEEEECCTTSCS-SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC---CSSSEEEETTEETTTBCHHHH
T ss_pred             eEEEEEEEEeCCCCCC-CccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCcc---CCCCEEEECCEEhhhCCHHHH
Confidence            5999999999976422 236699999999999999999999999999999999998   99999 7788432        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC-CCCccHHHHHHHHHhhccC---------CCCCC----CCCChhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA-PWTFNPLLLLNCLKNLRNQ---------GSVYA----PSFDHGV  213 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~-~~~~~~~~~~~~l~~l~l~---------~~~~~----~~lS~G~  213 (254)
                      +...+. |+|+.+.+.   -|+.+|+.     +|. +.+...+++.++++..++.         .+..+    ..|||||
T Consensus      1152 R~~i~~-V~Qdp~LF~---gTIreNI~-----~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQ 1222 (1321)
T 4f4c_A         1152 RSQIAI-VSQEPTLFD---CSIAENII-----YGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQ 1222 (1321)
T ss_dssp             HTTEEE-ECSSCCCCS---EEHHHHHS-----SSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHH
T ss_pred             HhheEE-ECCCCEeeC---ccHHHHHh-----ccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHH
Confidence            344564 888887654   36777663     443 3455667777777766542         23333    4799999


Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||++||||++.+|+||||||||+.||+.+-+.|.+.|++
T Consensus      1223 rQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~ 1262 (1321)
T 4f4c_A         1223 KQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDR 1262 (1321)
T ss_dssp             HHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998865

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3e-26  Score=218.72  Aligned_cols=156  Identities=18%  Similarity=0.209  Sum_probs=116.1

Q ss_pred             ecceeecccccceeccccceeeeeCCC-----eEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366           81 RCMDEVYDALAQRLLPTSALASNVNVK-----HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (254)
Q Consensus        81 ~~l~~~y~~~~~~vlal~~vsl~i~~G-----eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (254)
                      .++.+.|++.. .  ++++++|++.+|     |++||+||||||||||+|+|+|+++   |++|+.+.    ....+. +
T Consensus       350 ~~~~~~y~~~~-~--~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~---p~~G~~~~----~~~i~~-~  418 (608)
T 3j16_B          350 ASRAFSYPSLK-K--TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALK---PDEGQDIP----KLNVSM-K  418 (608)
T ss_dssp             SSSCCEECCEE-E--ECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSC---CSBCCCCC----SCCEEE-E
T ss_pred             cceeEEecCcc-c--ccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCC---CCCCcCcc----CCcEEE-e
Confidence            56788887532 2  569999999998     7899999999999999999999998   99997321    223443 4


Q ss_pred             eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEe
Q 025366          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (254)
Q Consensus       156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlD  233 (254)
                      .++....+  ..++.++...  ...+.  ........++++.+++.  .+.++.+|||||+|||+||++|+.+|+|||||
T Consensus       419 ~q~~~~~~--~~tv~e~~~~--~~~~~--~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD  492 (608)
T 3j16_B          419 PQKIAPKF--PGTVRQLFFK--KIRGQ--FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID  492 (608)
T ss_dssp             CSSCCCCC--CSBHHHHHHH--HCSST--TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred             cccccccC--CccHHHHHHH--Hhhcc--cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence            54422221  1355554321  11111  12334556778888776  56788999999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHhhc
Q 025366          234 GNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       234 Ep~~~lD~~~~~~l~~ll~~  253 (254)
                      |||++||+.++.++.++|.+
T Consensus       493 EPT~gLD~~~~~~i~~ll~~  512 (608)
T 3j16_B          493 EPSAYLDSEQRIICSKVIRR  512 (608)
T ss_dssp             CTTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999888753

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.94  E-value=3.1e-26  Score=234.88  Aligned_cols=165  Identities=16%  Similarity=0.130  Sum_probs=126.0

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------  147 (254)
                      ..++++||++.|++.. ...+|+|+||++++||++||+||||||||||+++|+|+++   |++|+ .++|...       
T Consensus      1029 g~i~~~~v~~~y~~~~-~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~---p~~G~I~i~g~~i~~~~~~~ 1104 (1284)
T 3g5u_A         1029 GNVQFSGVVFNYPTRP-SIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYD---PMAGSVFLDGKEIKQLNVQW 1104 (1284)
T ss_dssp             CCEEEEEEEBCCSCGG-GCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSC---CSEEEEESSSSCTTSSCHHH
T ss_pred             CcEEEEEEEEECCCCC-CCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC---CCCCEEEECCEEcccCCHHH
Confidence            3599999999997632 1236799999999999999999999999999999999998   99999 6777532       


Q ss_pred             -CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC-CCccHHHHHHHHHhhccC---------CCC----CCCCCChh
Q 025366          148 -PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP-WTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHG  212 (254)
Q Consensus       148 -~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~-~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G  212 (254)
                       +...+. ++++...+.   .++.+|+.+     +.+ .....+.+.+.++..++.         .+.    ....||||
T Consensus      1105 ~r~~i~~-v~Q~~~l~~---~ti~eNi~~-----~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgG 1175 (1284)
T 3g5u_A         1105 LRAQLGI-VSQEPILFD---CSIAENIAY-----GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGG 1175 (1284)
T ss_dssp             HTTSCEE-EESSCCCCS---SBHHHHHTC-----CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHH
T ss_pred             HHhceEE-ECCCCcccc---ccHHHHHhc-----cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHH
Confidence             234565 788875432   477776532     222 123344455555544321         111    24589999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||+++||||+.+|+||||||||++||+.+.+.+.+.+++
T Consensus      1176 q~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~ 1216 (1284)
T 3g5u_A         1176 QKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDK 1216 (1284)
T ss_dssp             HHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998863

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=99.93  E-value=2.3e-26  Score=235.82  Aligned_cols=162  Identities=17%  Similarity=0.142  Sum_probs=123.8

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .|+++||++.|++.. ...+|+|+||++++|+++||+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus       387 ~i~~~~v~~~y~~~~-~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~---~~~G~i~i~g~~i~~~~~~~~  462 (1284)
T 3g5u_A          387 NLEFKNIHFSYPSRK-EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD---PLDGMVSIDGQDIRTINVRYL  462 (1284)
T ss_dssp             CEEEEEEEECCSSTT-SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             eEEEEEEEEEcCCCC-CCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCCeEEEECCEEHHhCCHHHH
Confidence            589999999997632 1236799999999999999999999999999999999998   99999 6777432        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHh---------hccCCC----CCCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---------LRNQGS----VYAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~---------l~l~~~----~~~~~lS~G~~  214 (254)
                      +...+. +.++...+.   .++.+|+.+..     + ....+.+.+.++.         +..+.+    .....||||||
T Consensus       463 r~~i~~-v~Q~~~l~~---~ti~eNi~~g~-----~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~  532 (1284)
T 3g5u_A          463 REIIGV-VSQEPVLFA---TTIAENIRYGR-----E-DVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQK  532 (1284)
T ss_dssp             HHHEEE-ECSSCCCCS---SCHHHHHHHHC-----S-SCCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHH
T ss_pred             HhheEE-EcCCCccCC---ccHHHHHhcCC-----C-CCCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHH
Confidence            123554 788765443   48888886532     1 1223334443333         222222    34568999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ||++||||++.+|+||||||||++||+...+.+.+.++
T Consensus       533 QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~  570 (1284)
T 3g5u_A          533 QRIAIARALVRNPKILLLDEATSALDTESEAVVQAALD  570 (1284)
T ss_dssp             HHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999988888775

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.93  E-value=3.4e-26  Score=226.62  Aligned_cols=170  Identities=14%  Similarity=0.167  Sum_probs=121.2

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVAT  153 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~  153 (254)
                      .++|+++||++.|++..+.  +|+|+||++++|++++|+||||||||||+|+|+|+++   |++|+ .+.++.   ..++
T Consensus       669 ~~mL~v~nLs~~Y~g~~~~--iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~---P~sG~I~~~~~~---~I~y  740 (986)
T 2iw3_A          669 KAIVKVTNMEFQYPGTSKP--QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELL---PTSGEVYTHENC---RIAY  740 (986)
T ss_dssp             SEEEEEEEEEECCTTCSSC--SEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSC---CSEEEEEECTTC---CEEE
T ss_pred             CceEEEEeeEEEeCCCCce--eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC---CCceEEEEcCcc---ceEe
Confidence            3579999999999752122  5699999999999999999999999999999999997   99999 444321   1222


Q ss_pred             EeeCCCC-----------------------C-------------------------------------------------
Q 025366          154 VLPMDGF-----------------------H-------------------------------------------------  161 (254)
Q Consensus       154 ~i~~~~~-----------------------~-------------------------------------------------  161 (254)
                       +.+..+                       .                                                 
T Consensus       741 -v~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~  819 (986)
T 2iw3_A          741 -IKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC  819 (986)
T ss_dssp             -ECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred             -eccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence             111100                       0                                                 


Q ss_pred             ---------C---CCcCCChhhcH--------HHH-----------HHHcCCCCCccHHHHHHHHHhhccCC----CCCC
Q 025366          162 ---------L---YLSQLDAMEDP--------KEA-----------HARRGAPWTFNPLLLLNCLKNLRNQG----SVYA  206 (254)
Q Consensus       162 ---------~---~~~~l~~~e~~--------~~~-----------~~~~g~~~~~~~~~~~~~l~~l~l~~----~~~~  206 (254)
                               +   ....++..++.        ...           ....+.........+.++++.+++..    +.++
T Consensus       820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~  899 (986)
T 2iw3_A          820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI  899 (986)
T ss_dssp             EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG
T ss_pred             hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCchhhcCCCc
Confidence                     0   00001111110        000           00123222334566788899998852    5678


Q ss_pred             CCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       207 ~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ..||||||||++||++|+.+|+||||||||++||+.+...+.++|.+
T Consensus       900 ~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~  946 (986)
T 2iw3_A          900 RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE  946 (986)
T ss_dssp             GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHS
T ss_pred             cccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999998864

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=99.93  E-value=1.2e-25  Score=222.85  Aligned_cols=156  Identities=13%  Similarity=0.027  Sum_probs=114.8

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (254)
                      .+...|+++.|++..    +|+++||++++|++++|+||||||||||+|+|+|-.    . .|.....   ....++ +.
T Consensus       435 ~L~~~~ls~~yg~~~----iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~----i-~g~~~~~---~~~~~~-v~  501 (986)
T 2iw3_A          435 DLCNCEFSLAYGAKI----LLNKTQLRLKRARRYGICGPNGCGKSTLMRAIANGQ----V-DGFPTQE---ECRTVY-VE  501 (986)
T ss_dssp             EEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHHTC----S-TTCCCTT---TSCEEE-TT
T ss_pred             eeEEeeEEEEECCEE----eEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCC----c-CCCcccc---ceeEEE-Ec
Confidence            566669999998733    669999999999999999999999999999999621    0 1110000   111222 33


Q ss_pred             CCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEe
Q 025366          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (254)
Q Consensus       157 ~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlD  233 (254)
                      ++... ....+++.+++..  ...+    . ...+.++++.+++.   .+.++.+||||||||++||++|+.+|+|||||
T Consensus       502 q~~~~-~~~~ltv~e~l~~--~~~~----~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLD  573 (986)
T 2iw3_A          502 HDIDG-THSDTSVLDFVFE--SGVG----T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLD  573 (986)
T ss_dssp             CCCCC-CCTTSBHHHHHHT--TCSS----C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             ccccc-cccCCcHHHHHHH--hhcC----H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence            32111 1123566666543  1111    1 56678899999884   46778899999999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHhhc
Q 025366          234 GNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       234 Ep~~~lD~~~~~~l~~ll~~  253 (254)
                      |||++||+..++.+.++|.+
T Consensus       574 EPTs~LD~~~~~~l~~~L~~  593 (986)
T 2iw3_A          574 EPTNHLDTVNVAWLVNYLNT  593 (986)
T ss_dssp             STTTTCCHHHHHHHHHHHHH
T ss_pred             CCccCCCHHHHHHHHHHHHh
Confidence            99999999999999998853

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3.7e-26  Score=218.12  Aligned_cols=163  Identities=13%  Similarity=0.072  Sum_probs=107.6

Q ss_pred             cceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceec------------CCCCC--
Q 025366           82 CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF------------DSQVK--  147 (254)
Q Consensus        82 ~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~------------~~~~~--  147 (254)
                      +++++|+...  . .+++++ .+++|+++||+||||||||||+|+|+|+++   |++|++.            .|...  
T Consensus        82 ~~~~~Y~~~~--~-~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~---P~~G~i~~~~~~~~~~~~~~g~~~~~  154 (608)
T 3j16_B           82 HVTHRYSANS--F-KLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQK---PNLGRFDDPPEWQEIIKYFRGSELQN  154 (608)
T ss_dssp             TEEEECSTTS--C-EEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC---CCTTTTCCSSCHHHHHHHTTTSTHHH
T ss_pred             CeEEEECCCc--e-eecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCC---CCCceEecccchhhhhheecChhhhh
Confidence            5788887632  1 345555 689999999999999999999999999997   9999741            11100  


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                            ......++. .. +.............................+.++++.+++.  .+.++.+|||||+||++|
T Consensus       155 ~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~i  232 (608)
T 3j16_B          155 YFTKMLEDDIKAIIK-PQ-YVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAI  232 (608)
T ss_dssp             HHHHHHHTSCCCEEE-CC-CTTTHHHHCSSSSSHHHHHHHHHCCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHH
T ss_pred             hhhHHHHHhhhhhhc-hh-hhhhhhhhhcchhhHHHHHHhhhhhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHH
Confidence                  000000000 00 00000000000000000011111122346678888888876  567889999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+||+.+|++|||||||++||+..+..+.+++.+
T Consensus       233 AraL~~~p~llllDEPts~LD~~~~~~l~~~l~~  266 (608)
T 3j16_B          233 GMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRS  266 (608)
T ss_dssp             HHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHG
T ss_pred             HHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998864

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=99.93  E-value=8.5e-26  Score=232.15  Aligned_cols=162  Identities=16%  Similarity=0.134  Sum_probs=127.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      -|+++||++.|++.. ...+|+|+||++++|+.++|+||+|||||||+++|.|++.   |++|+ .++|....       
T Consensus       415 ~I~~~nvsF~Y~~~~-~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~---~~~G~I~idG~~i~~~~~~~l  490 (1321)
T 4f4c_A          415 DITVENVHFTYPSRP-DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD---VLKGKITIDGVDVRDINLEFL  490 (1321)
T ss_dssp             CEEEEEEEECCSSST-TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHH
T ss_pred             cEEEEEeeeeCCCCC-CCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccc---cccCcccCCCccchhccHHHH
Confidence            489999999997642 2236799999999999999999999999999999999998   99999 67774321       


Q ss_pred             -CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------CCCC----CCCCCChhhh
Q 025366          149 -PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------QGSV----YAPSFDHGVG  214 (254)
Q Consensus       149 -~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~~~~----~~~~lS~G~~  214 (254)
                       ...++ +.|+.+.+.   -|+.+|+.+     |.+. .+.+++.++++...+         +.+.    .-..||||||
T Consensus       491 r~~i~~-v~Q~~~Lf~---~TI~eNI~~-----g~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQk  560 (1321)
T 4f4c_A          491 RKNVAV-VSQEPALFN---CTIEENISL-----GKEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQK  560 (1321)
T ss_dssp             HHHEEE-ECSSCCCCS---EEHHHHHHT-----TCTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHH
T ss_pred             hhcccc-cCCcceeeC---CchhHHHhh-----hccc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHH
Confidence             23554 788876554   478887754     3332 345666666665443         2232    2357999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ||++||||+..+|+|+||||||++||+.+...+.+.|+
T Consensus       561 QRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~  598 (1321)
T 4f4c_A          561 QRIAIARALVRNPKILLLDEATSALDAESEGIVQQALD  598 (1321)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999998888877765

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=99.91  E-value=1.4e-24  Score=204.76  Aligned_cols=156  Identities=13%  Similarity=0.050  Sum_probs=104.1

Q ss_pred             ecceeecccccceeccccceeeee-CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCcee------------cCCCCC
Q 025366           81 RCMDEVYDALAQRLLPTSALASNV-NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS------------FDSQVK  147 (254)
Q Consensus        81 ~~l~~~y~~~~~~vlal~~vsl~i-~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~------------~~~~~~  147 (254)
                      ++++.+|+...     ++-..+.+ ++|+++||+||||||||||+|+|+|+++   |++|++            +.|...
T Consensus         3 ~~~~~~~~~~~-----f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~---p~~G~i~~~~~~~~~~~~~~g~~i   74 (538)
T 3ozx_A            3 GEVIHRYKVNG-----FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEII---PNFGDPNSKVGKDEVLKRFRGKEI   74 (538)
T ss_dssp             CCEEEESSTTS-----CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSC---CCTTCTTSCCCHHHHHHHHTTSTT
T ss_pred             CCCceecCCCc-----eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCC---CCCCccccccchhhHHhhcCCeeH
Confidence            35788998743     23334444 4799999999999999999999999997   999974            223211


Q ss_pred             --------CCCeE--EEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhh
Q 025366          148 --------PPDVA--TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGD  215 (254)
Q Consensus       148 --------~~~~g--~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~q  215 (254)
                              ....+  ..+............++.+..   . ...     ......++++.+++.  .+.++.+|||||+|
T Consensus        75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l---~-~~~-----~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~Q  145 (538)
T 3ozx_A           75 YNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEIL---T-KID-----ERGKKDEVKELLNMTNLWNKDANILSGGGLQ  145 (538)
T ss_dssp             HHHHHHHHTTCCCEEEECSCTTGGGTTCCSBHHHHH---H-HHC-----CSSCHHHHHHHTTCGGGTTSBGGGCCHHHHH
T ss_pred             HHHHHHHhhcccchhhccchhhhhhhhccCcHHHHh---h-cch-----hHHHHHHHHHHcCCchhhcCChhhCCHHHHH
Confidence                    01111  111111110000001111111   1 111     112345677777765  56788899999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++||+||+.+|+||||||||++||+..+..+.++|.+
T Consensus       146 rv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~  183 (538)
T 3ozx_A          146 RLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRE  183 (538)
T ss_dssp             HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999988753

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.91  E-value=8.9e-25  Score=211.40  Aligned_cols=154  Identities=16%  Similarity=0.099  Sum_probs=89.8

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHH---------------------HHHHHhhcccCCCCcee--------cCCCC
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLA---------------------AEVVRRINKIWPQKASS--------FDSQV  146 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLl---------------------k~L~Gll~~~~p~~G~~--------~~~~~  146 (254)
                      +|+||||+|++|+++||+||||||||||+                     +++.|+..   |+.|.+        +++..
T Consensus        33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~---~~~~~i~~~~~~i~~~~~~  109 (670)
T 3ux8_A           33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEK---PDVDAIEGLSPAISIDQKT  109 (670)
T ss_dssp             TCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC-----------------CCCSEEESCCCEEEESSCC
T ss_pred             ceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhccccc---CCccceeccccceEecCch
Confidence            77999999999999999999999999998                     88888876   775541        12211


Q ss_pred             C----CCCeEEEeeCCCCCC-----------------CCcCCChhhcHHHHHHHc--CCCCCc------cHHHHHHHHHh
Q 025366          147 K----PPDVATVLPMDGFHL-----------------YLSQLDAMEDPKEAHARR--GAPWTF------NPLLLLNCLKN  197 (254)
Q Consensus       147 ~----~~~~g~~i~~~~~~~-----------------~~~~l~~~e~~~~~~~~~--g~~~~~------~~~~~~~~l~~  197 (254)
                      .    ....|. +.+....+                 ....+++.+++.+.....  ......      .......+++.
T Consensus       110 ~~~~~~~~ig~-v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  188 (670)
T 3ux8_A          110 TSRNPRSTVGT-VTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFLQN  188 (670)
T ss_dssp             -----CCBHHH-HTTCC-------------------------CC--------------------------CHHHHHHHHH
T ss_pred             hhccchhceee-eechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHHHH
Confidence            0    011111 11100000                 001235555554321100  000000      01112345777


Q ss_pred             hccC---CCCCCCCCChhhhhhHhhhhhhcCCCc--EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          198 LRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       198 l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~--vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +++.   .+.++.+|||||+||++||+||+.+|+  ||||||||++||+..++.+.++|.+
T Consensus       189 ~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~  249 (670)
T 3ux8_A          189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKS  249 (670)
T ss_dssp             TTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred             cCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHH
Confidence            7765   467888999999999999999999988  9999999999999999999998853

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=99.90  E-value=1.1e-25  Score=199.18  Aligned_cols=142  Identities=21%  Similarity=0.288  Sum_probs=109.4

Q ss_pred             eEEEecceeecccccceeccccceeee-----------------------eCCCeEEEEECCCCCcHHHHHHHHHHhhcc
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASN-----------------------VNVKHIVGLAGPPGAGKSTLAAEVVRRINK  133 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~-----------------------i~~GeivgLiGpNGsGKSTLlk~L~Gll~~  133 (254)
                      .|++++|++.|+.      +++++++.                       +++|+++||+||||||||||+++|+|+++ 
T Consensus        43 ~i~~~~v~~~y~p------~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~-  115 (312)
T 3aez_A           43 QIDLLEVEEVYLP------LARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLA-  115 (312)
T ss_dssp             CCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHH-
T ss_pred             eEEeeehhhhhhh------HHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhcc-
Confidence            5889999999964      33555543                       78999999999999999999999999997 


Q ss_pred             cCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC-CCCCCCCChh
Q 025366          134 IWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHG  212 (254)
Q Consensus       134 ~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G  212 (254)
                        |+.|        ....+. +.+++++...   ++.++..+. ..++.+..++...+.++++.++.+. +.+++.||+|
T Consensus       116 --~~~G--------~~~v~~-v~qd~~~~~~---t~~e~~~~~-~~~g~~~~~d~~~~~~~L~~l~~~~~~~~~~~lS~G  180 (312)
T 3aez_A          116 --RWDH--------HPRVDL-VTTDGFLYPN---AELQRRNLM-HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHL  180 (312)
T ss_dssp             --TSTT--------CCCEEE-EEGGGGBCCH---HHHHHTTCT-TCTTSGGGBCHHHHHHHHHHHHTTCSCEEEEEEETT
T ss_pred             --ccCC--------CCeEEE-EecCccCCcc---cHHHHHHHH-HhcCCChHHHHHHHHHHHHHhCCCcccCCcccCChh
Confidence              6555        234554 7888875432   444443221 1135555667778888888888443 3678899999


Q ss_pred             hhhhHhhhhhhcCCCcEEEEeCCCCCCC
Q 025366          213 VGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (254)
Q Consensus       213 ~~qrv~ia~al~~~p~vlIlDEp~~~lD  240 (254)
                      |+||+++|++++.+|+|||+|||++++|
T Consensus       181 ~~qRv~~a~al~~~p~ilIlDep~~~~d  208 (312)
T 3aez_A          181 HYDIIPGAEQVVRHPDILILEGLNVLQT  208 (312)
T ss_dssp             TTEEEEEEEEEECSCSEEEEECTTTTCC
T ss_pred             hhhhhhhHHHhccCCCEEEECCccccCC
Confidence            9999999999999999999999999987

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=99.88  E-value=2e-22  Score=194.95  Aligned_cols=64  Identities=13%  Similarity=0.005  Sum_probs=54.0

Q ss_pred             HHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          190 LLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       190 ~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p---~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ...+.++.+++.   .+.++.+|||||+|||+||+||+.+|   +|||+||||++||+..+.++.++|.+
T Consensus       522 ~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~  591 (670)
T 3ux8_A          522 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR  591 (670)
T ss_dssp             HHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            445666667664   35677899999999999999998776   59999999999999999999998863

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=99.85  E-value=2.5e-25  Score=206.25  Aligned_cols=159  Identities=13%  Similarity=0.024  Sum_probs=106.8

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc-e-e-cCCCCCCCCe
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA-S-S-FDSQVKPPDV  151 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G-~-~-~~~~~~~~~~  151 (254)
                      .++++++||++.|+          +++|++++|++++|+||||||||||+|+|+|++.   |++| + + ++++. ....
T Consensus       116 ~~mi~~~nl~~~y~----------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~---p~~G~~pI~vdg~~-~~~i  181 (460)
T 2npi_A          116 HTMKYIYNLHFMLE----------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYAL---KFNAYQPLYINLDP-QQPI  181 (460)
T ss_dssp             CTHHHHHHHHHHHH----------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTH---HHHCCCCEEEECCT-TSCS
T ss_pred             cchhhhhhhhehhh----------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCccc---ccCCceeEEEcCCc-cCCe
Confidence            34677788887774          5889999999999999999999999999999997   8999 7 4 45532 2222


Q ss_pred             EEEeeCCCCC-CCCcCCChhhcHHHHHHH-cCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhh--hcCCC
Q 025366          152 ATVLPMDGFH-LYLSQLDAMEDPKEAHAR-RGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL--VGLQH  227 (254)
Q Consensus       152 g~~i~~~~~~-~~~~~l~~~e~~~~~~~~-~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~a--l~~~p  227 (254)
                      +. +.++... .....+++.++. +.... .+   .........+++.+++.....+.+||+||+||+++|++  |+.+|
T Consensus       182 ~~-vpq~~~l~~~~~~~tv~eni-~~~~~~~~---~~~~~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p  256 (460)
T 2npi_A          182 FT-VPGCISATPISDILDAQLPT-WGQSLTSG---ATLLHNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDP  256 (460)
T ss_dssp             SS-CSSCCEEEECCSCCCTTCTT-CSCBCBSS---CCSSCCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred             ee-eccchhhcccccccchhhhh-cccccccC---cchHHHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCc
Confidence            22 2222110 011113444443 21100 01   00111223344455554333377899999999999999  99999


Q ss_pred             cE----EEEeC-CCCCCCHHHHHHHHHHhhc
Q 025366          228 KV----VIVDG-NYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       228 ~v----lIlDE-p~~~lD~~~~~~l~~ll~~  253 (254)
                      ++    ||||| ||++||+. ++.+.+++++
T Consensus       257 ~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~  286 (460)
T 2npi_A          257 QVRRSGCIVDTPSISQLDEN-LAELHHIIEK  286 (460)
T ss_dssp             HHHHSCEEEECCCGGGSCSS-CHHHHHHHHH
T ss_pred             ccCcceEEEeCCcccccChh-HHHHHHHHHH
Confidence            99    99999 99999998 7777777653

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=99.85  E-value=4.6e-23  Score=172.31  Aligned_cols=127  Identities=17%  Similarity=0.085  Sum_probs=81.9

Q ss_pred             eecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCC----C--CCCCCeEEEeeCC
Q 025366           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDS----Q--VKPPDVATVLPMD  158 (254)
Q Consensus        85 ~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~----~--~~~~~~g~~i~~~  158 (254)
                      |.|+...    +|+++    ++|++++|+||||||||||+++|+|+ +   |++|++...    .  ......|+ +.++
T Consensus         8 k~~g~~~----~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~---p~~G~I~~~~~~~~~~~~~~~ig~-v~q~   74 (208)
T 3b85_A            8 KTLGQKH----YVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-A---LQSKQVSRIILTRPAVEAGEKLGF-LPGT   74 (208)
T ss_dssp             CSHHHHH----HHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-H---HHTTSCSEEEEEECSCCTTCCCCS-SCC-
T ss_pred             CCHhHHH----HHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-C---CcCCeeeeEEecCCchhhhcceEE-ecCC
Confidence            4565533    66885    78999999999999999999999999 7   999984210    0  00111222 2222


Q ss_pred             CCCCCCcCCChhhcH-HH----HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEe
Q 025366          159 GFHLYLSQLDAMEDP-KE----AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (254)
Q Consensus       159 ~~~~~~~~l~~~e~~-~~----~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlD  233 (254)
                      .          .+++ .+    .......   .....+.++++. ++           ||+||+++|+||+.+|++||||
T Consensus        75 ~----------~enl~~~~~~~~~~~~~~---~~~~~~~~~l~~-gl-----------Gq~qrv~lAraL~~~p~lllLD  129 (208)
T 3b85_A           75 L----------NEKIDPYLRPLHDALRDM---VEPEVIPKLMEA-GI-----------VEVAPLAYMRGRTLNDAFVILD  129 (208)
T ss_dssp             ---------------CTTTHHHHHHHTTT---SCTTHHHHHHHT-TS-----------EEEEEGGGGTTCCBCSEEEEEC
T ss_pred             H----------HHHHHHHHHHHHHHHHHh---ccHHHHHHHHHh-CC-----------chHHHHHHHHHHhcCCCEEEEe
Confidence            1          1111 01    0111111   112334455553 22           9999999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHhhc
Q 025366          234 GNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       234 Ep~~~lD~~~~~~l~~ll~~  253 (254)
                      |||++    .+..+.++|.+
T Consensus       130 EPts~----~~~~l~~~l~~  145 (208)
T 3b85_A          130 EAQNT----TPAQMKMFLTR  145 (208)
T ss_dssp             SGGGC----CHHHHHHHHTT
T ss_pred             CCccc----cHHHHHHHHHH
Confidence            99999    67788877753

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=99.84  E-value=4.3e-21  Score=188.33  Aligned_cols=65  Identities=11%  Similarity=0.029  Sum_probs=56.8

Q ss_pred             HHHHHHHHhhccCC---CCCCCCCChhhhhhHhhhhhhcCC---CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          189 LLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQ---HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       189 ~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~ia~al~~~---p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ....++++.+++..   ...+..|||||+||+++|++|+.+   |+||||||||++||+..++++.++|++
T Consensus       708 ~~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~  778 (842)
T 2vf7_A          708 FRALDTLREVGLGYLRLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVK  778 (842)
T ss_dssp             HHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCcccccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            34577888888864   567889999999999999999986   799999999999999999999998853

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=99.84  E-value=6.7e-22  Score=159.95  Aligned_cols=46  Identities=4%  Similarity=-0.174  Sum_probs=40.9

Q ss_pred             CCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH----------------HHHHHHHHhh
Q 025366          207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG----------------VWKDVSSMFD  252 (254)
Q Consensus       207 ~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~----------------~~~~l~~ll~  252 (254)
                      ...|+|++||+++|++++.+|++|++||||++||+.                .+.++.+++.
T Consensus        82 ~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~  143 (171)
T 4gp7_A           82 NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIK  143 (171)
T ss_dssp             CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHST
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhh
Confidence            456999999999999999999999999999999999                5577777754

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.82  E-value=6.6e-23  Score=187.28  Aligned_cols=140  Identities=8%  Similarity=-0.043  Sum_probs=102.5

Q ss_pred             cccceeeeeCCCe--------------------EEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEE
Q 025366           96 PTSALASNVNVKH--------------------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATV  154 (254)
Q Consensus        96 al~~vsl~i~~Ge--------------------ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~  154 (254)
                      ++++++|++++|+                    ++||+||||||||||+|+|+|+++   |++|+ .+++.... ..+. 
T Consensus        38 ~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~---p~~GsI~~~g~~~t-~~~~-  112 (413)
T 1tq4_A           38 ILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGN---EEEGAAKTGVVEVT-MERH-  112 (413)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCT---TSTTSCCCCC-----CCCE-
T ss_pred             HhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCC---ccCceEEECCeecc-eeEE-
Confidence            6799999999999                    999999999999999999999997   99999 45553221 1244 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChh--hhhhHhhhhhhcC-------
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHG--VGDPVEDDILVGL-------  225 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G--~~qrv~ia~al~~-------  225 (254)
                      +.+... .  +.+++.+++.+.     ..    ...+.++++.+++........+|+|  |+||+.+|++++.       
T Consensus       113 v~q~~~-~--~~ltv~D~~g~~-----~~----~~~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~~~~p~~l  180 (413)
T 1tq4_A          113 PYKHPN-I--PNVVFWDLPGIG-----ST----NFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYF  180 (413)
T ss_dssp             EEECSS-C--TTEEEEECCCGG-----GS----SCCHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHHTTCEEEE
T ss_pred             eccccc-c--CCeeehHhhccc-----ch----HHHHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHhcCCCeEE
Confidence            343322 1  124555544221     11    1235667777766542222239999  9999999999998       


Q ss_pred             ---CCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          226 ---QHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       226 ---~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                         +|+++|+||||++||+..++++.+++.
T Consensus       181 V~tkpdlllLDEPtsgLD~~~~~~l~~~l~  210 (413)
T 1tq4_A          181 VRTKVDSDITNEADGEPQTFDKEKVLQDIR  210 (413)
T ss_dssp             EECCHHHHHHHHHTTCCTTCCHHHHHHHHH
T ss_pred             EEecCcccccCcccccCCHHHHHHHHHHHH
Confidence               999999999999999999988887764

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=99.82  E-value=6.7e-20  Score=180.76  Aligned_cols=64  Identities=13%  Similarity=0.007  Sum_probs=55.4

Q ss_pred             HHHHHHHhhccCC---CCCCCCCChhhhhhHhhhhhhcCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          190 LLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       190 ~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~ia~al~~~p---~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ...++++.+++..   ...+..|||||+||+++|++|+.+|   +||||||||++||+..++.+.++|.+
T Consensus       824 ~~~~~L~~~gL~~~~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~  893 (972)
T 2r6f_A          824 RKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHR  893 (972)
T ss_dssp             HHHHHHHHTTCSSSBTTCCGGGCCHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcccccCchhhCCHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            3467788888763   5678899999999999999999764   99999999999999999999998853

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=99.82  E-value=1.6e-19  Score=178.55  Aligned_cols=66  Identities=11%  Similarity=0.021  Sum_probs=56.9

Q ss_pred             HHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC---cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          188 PLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH---KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       188 ~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p---~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .....++++.++++   ...++..|||||+||++||++|+.+|   +||||||||++||+...+.+.++|++
T Consensus       782 ~~~~~~~L~~vGL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~  853 (916)
T 3pih_A          782 IKRTLQVLHDVGLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR  853 (916)
T ss_dssp             HHHHHHHHHHTTGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            34567788888886   35678899999999999999998765   79999999999999999999998863

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=99.80  E-value=4.4e-20  Score=168.39  Aligned_cols=45  Identities=16%  Similarity=0.017  Sum_probs=42.8

Q ss_pred             CChhhhhhHhhhhhhcCCC--cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          209 FDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       209 lS~G~~qrv~ia~al~~~p--~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||||+||+++|++++.+|  ++|||||||++||+..+..+.++|.+
T Consensus       296 lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~  342 (415)
T 4aby_A          296 ASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSR  342 (415)
T ss_dssp             SCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred             cCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            6999999999999999999  99999999999999999999998864

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=99.80  E-value=4e-20  Score=157.62  Aligned_cols=133  Identities=22%  Similarity=0.321  Sum_probs=87.5

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~  174 (254)
                      +|+++||++++|+++||+||||||||||+++|+|++.       . .++  ......+. +.++.++.   .++..++..
T Consensus        14 ~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG-------~~~~~--~~~~~i~~-v~~d~~~~---~l~~~~~~~   80 (245)
T 2jeo_A           14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLG-------QNEVE--QRQRKVVI-LSQDRFYK---VLTAEQKAK   80 (245)
T ss_dssp             ---------CCSEEEEEECSTTSSHHHHHHHHHHHHT-------GGGSC--GGGCSEEE-EEGGGGBC---CCCHHHHHH
T ss_pred             eecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHhc-------hhccc--ccCCceEE-EeCCcCcc---ccCHhHhhh
Confidence            6799999999999999999999999999999999872       1 111  01223444 67765322   256666554


Q ss_pred             HHHHHcCC--CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH
Q 025366          175 EAHARRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (254)
Q Consensus       175 ~~~~~~g~--~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~  242 (254)
                      .....+.+  +..++...+.+.++.+.-....+++.||+||+||+.+ ++++.+|+++|+|||+...|..
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~  149 (245)
T 2jeo_A           81 ALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE  149 (245)
T ss_dssp             HHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH
T ss_pred             hhccCCCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCc-eEEecCCCEEEEeCccccccHH
Confidence            43222222  2234455667777777666778889999999999987 5778899999999999888763

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=99.77  E-value=2.5e-21  Score=170.31  Aligned_cols=131  Identities=11%  Similarity=0.085  Sum_probs=89.1

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (254)
                      +|++++|++.|+ ..    +|+++||+|++|++++|+||||||||||+++|+|++      +|+++          .++.
T Consensus       101 ~i~~~~vs~~y~-~~----vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~------~G~I~----------~~v~  159 (305)
T 2v9p_A          101 FFNYQNIELITF-IN----ALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL------GGSVL----------SFAN  159 (305)
T ss_dssp             HHHHTTCCHHHH-HH----HHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH------TCEEE----------CGGG
T ss_pred             eEEEEEEEEEcC-hh----hhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc------CceEE----------EEec
Confidence            478899999997 22    679999999999999999999999999999999997      23310          0011


Q ss_pred             CCCCCCCCcCCChhh-cHHHHHHHcCCCCCccHHHHHHHHHh-hccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeC
Q 025366          157 MDGFHLYLSQLDAME-DPKEAHARRGAPWTFNPLLLLNCLKN-LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (254)
Q Consensus       157 ~~~~~~~~~~l~~~e-~~~~~~~~~g~~~~~~~~~~~~~l~~-l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDE  234 (254)
                      ++.. ++.  -++.+ ++.+       ..... ....+.++. +..+.+  ...||+|||||   |||++.+|+|||   
T Consensus       160 q~~~-lf~--~ti~~~ni~~-------~~~~~-~~~~~~i~~~L~~gld--g~~LSgGqkQR---ARAll~~p~iLl---  220 (305)
T 2v9p_A          160 HKSH-FWL--ASLADTRAAL-------VDDAT-HACWRYFDTYLRNALD--GYPVSIDRKHK---AAVQIKAPPLLV---  220 (305)
T ss_dssp             TTSG-GGG--GGGTTCSCEE-------EEEEC-HHHHHHHHHTTTGGGG--TCCEECCCSSC---CCCEECCCCEEE---
T ss_pred             Cccc-ccc--ccHHHHhhcc-------Ccccc-HHHHHHHHHHhHccCC--ccCcCHHHHHH---HHHHhCCCCEEE---
Confidence            1111 111  12221 2111       00011 134445554 322223  67899999999   999999999999   


Q ss_pred             CCCCCCHHHHHHHH
Q 025366          235 NYLFLDGGVWKDVS  248 (254)
Q Consensus       235 p~~~lD~~~~~~l~  248 (254)
                       |++||+...+.+.
T Consensus       221 -Ts~LD~~~~~~i~  233 (305)
T 2v9p_A          221 -TSNIDVQAEDRYL  233 (305)
T ss_dssp             -EESSCSTTCGGGG
T ss_pred             -ECCCCHHHHHHHH
Confidence             9999998766654

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=99.76  E-value=1e-20  Score=154.36  Aligned_cols=51  Identities=12%  Similarity=0.039  Sum_probs=46.3

Q ss_pred             CCCCCCCChhhhhhHhhhhh-----hcCCCcEEEEeC--CCCCCCHHHHHHHHHHhhc
Q 025366          203 SVYAPSFDHGVGDPVEDDIL-----VGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       203 ~~~~~~lS~G~~qrv~ia~a-----l~~~p~vlIlDE--p~~~lD~~~~~~l~~ll~~  253 (254)
                      ..++..||+||+||+++|++     ++.+|++||+||  |++++|+..++.+.+++++
T Consensus        71 ~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~  128 (178)
T 1ye8_A           71 GSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD  128 (178)
T ss_dssp             TTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC
T ss_pred             cccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc
Confidence            44566899999999999996     999999999999  9999999999999998864

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=99.73  E-value=1.4e-17  Score=150.24  Aligned_cols=50  Identities=14%  Similarity=0.162  Sum_probs=46.1

Q ss_pred             CCCCCCChhhhhhHhhhhhhc------CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          204 VYAPSFDHGVGDPVEDDILVG------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       204 ~~~~~lS~G~~qrv~ia~al~------~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .++..|||||+||+++|+|++      .+|++|||||||++||+..++.+.++|.+
T Consensus       275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~  330 (365)
T 3qf7_A          275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKE  330 (365)
T ss_dssp             EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHG
T ss_pred             CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHH
Confidence            466789999999999999998      79999999999999999999999998864

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=99.71  E-value=2.1e-17  Score=146.45  Aligned_cols=50  Identities=14%  Similarity=0.028  Sum_probs=44.8

Q ss_pred             CCCCCCChhhhhhHhhhhhhc----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          204 VYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       204 ~~~~~lS~G~~qrv~ia~al~----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ..+..||+||+||+++|++++    .+|++|||||||++||+..++.+.+++.+
T Consensus       215 ~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~  268 (322)
T 1e69_A          215 QKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKE  268 (322)
T ss_dssp             CBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHH
T ss_pred             CchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            345689999999999999986    68899999999999999999999998753

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.68  E-value=4.6e-18  Score=147.33  Aligned_cols=128  Identities=13%  Similarity=0.057  Sum_probs=73.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~  182 (254)
                      .++|+||||||||||+|+|+|+..   |++|+ .++|....     ...+. +.++....  ..+++.+++.+.....  
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~---~~~G~i~~~g~~i~~~~~~~~i~~-v~q~~~~~--~~ltv~d~~~~g~~~~--   75 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQV---SRKASSWNREEKIPKTVEIKAIGH-VIEEGGVK--MKLTVIDTPGFGDQIN--   75 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC---------------CCCCCSCCEEEE-SCC----C--CEEEEECCCC--CCSB--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCC---CCCCccccCCcccCcceeeeeeEE-EeecCCCc--CCceEEechhhhhhcc--
Confidence            589999999999999999999997   99998 55553221     22343 33332211  1256667665432111  


Q ss_pred             CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHH
Q 025366          183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSM  250 (254)
Q Consensus       183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~l  250 (254)
                       .......+...++.  ...+..+.+||+||+||+++|++++.   ++++|||+.+||+...+.+..+
T Consensus        76 -~~~~~~~i~~~~~~--~~~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~~~l~~L  137 (270)
T 3sop_A           76 -NENCWEPIEKYINE--QYEKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDLEFMKHL  137 (270)
T ss_dssp             -CTTCSHHHHHHHHH--HHHHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHHHHHHHH
T ss_pred             -cHHHHHHHHHHHHH--HHHhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHHHHHHHHH
Confidence             11112223332221  11233456899999999999999864   9999999999999875555443

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=99.68  E-value=5.1e-19  Score=148.48  Aligned_cols=141  Identities=9%  Similarity=-0.026  Sum_probs=77.1

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCeEEEeeCCCCCCCCcCCChhh
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVATVLPMDGFHLYLSQLDAME  171 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g~~i~~~~~~~~~~~l~~~e  171 (254)
                      .|+++||++++|++++|+||||||||||+++|+|++    |  |+ .+ +...   .+..+. ...-++...    +...
T Consensus        12 ~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~----p--G~i~~-g~~~~~~~~~~~~-~~~i~~~~~----~~~~   79 (218)
T 1z6g_A           12 SGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF----P--NYFYF-SVSCTTRKKREKE-KEGVDYYFI----DKTI   79 (218)
T ss_dssp             ----------CCCCEEEECSTTSSHHHHHHHHHHHS----T--TTEEE-CCCEECSCCCSSC-CBTTTBEEC----CHHH
T ss_pred             cccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC----C--CcEEE-eecccCCCCCccc-ccCCeEEEC----CHHH
Confidence            569999999999999999999999999999999987    5  66 33 3110   000000 000011100    0000


Q ss_pred             cHHHHHH---Hc--C-CCC---CccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhh-----hhhhcCCCcEEEEeCCCC
Q 025366          172 DPKEAHA---RR--G-APW---TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED-----DILVGLQHKVVIVDGNYL  237 (254)
Q Consensus       172 ~~~~~~~---~~--g-~~~---~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~i-----a~al~~~p~vlIlDEp~~  237 (254)
                       ......   ..  + +..   ......+.++++.....  .....+||||+||+++     +++++.+|++++||||++
T Consensus        80 -~~~~~~~~~~l~~~~~~~~~~g~~~~~i~~~l~~~~~~--il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~  156 (218)
T 1z6g_A           80 -FEDKLKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKIC--LFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLL  156 (218)
T ss_dssp             -HHHHHHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEE--EEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHH
T ss_pred             -HHHhhhccchhhhhhcccccCCCcHHHHHHHHhCCCcE--EEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHH
Confidence             000000   00  0 000   01123445555543221  1114679999999999     889999999999999999


Q ss_pred             CCCHHHHHHHHHHh
Q 025366          238 FLDGGVWKDVSSMF  251 (254)
Q Consensus       238 ~lD~~~~~~l~~ll  251 (254)
                      .+|....+.+.+.+
T Consensus       157 ~~d~~~~~~i~~~l  170 (218)
T 1z6g_A          157 TRNTENQEQIQKRM  170 (218)
T ss_dssp             HTCCCCHHHHHHHH
T ss_pred             hcCCCCHHHHHHHH
Confidence            99987776666655

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=99.67  E-value=2.5e-18  Score=142.57  Aligned_cols=129  Identities=23%  Similarity=0.258  Sum_probs=90.0

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~  183 (254)
                      .++|+++||+||||||||||+++|+|++.                +..+. +.++.++.....++..++..+   .++.+
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~----------------~~i~~-v~~d~~~~~~~~~~~~~~~~~---~~~~~   62 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLG----------------ERVAL-LPMDHYYKDLGHLPLEERLRV---NYDHP   62 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHG----------------GGEEE-EEGGGCBCCCTTSCHHHHHHS---CTTSG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhC----------------CCeEE-EecCccccCcccccHHHhcCC---CCCCh
Confidence            46899999999999999999999999983                23444 777776543333454443221   12333


Q ss_pred             CCccHHHHHHHHHhhccCCC--CCCCCCChhhh----hhHhhhhhhcCCCcEEEEeCCCCC-------CCHHHHHHHHHH
Q 025366          184 WTFNPLLLLNCLKNLRNQGS--VYAPSFDHGVG----DPVEDDILVGLQHKVVIVDGNYLF-------LDGGVWKDVSSM  250 (254)
Q Consensus       184 ~~~~~~~~~~~l~~l~l~~~--~~~~~lS~G~~----qrv~ia~al~~~p~vlIlDEp~~~-------lD~~~~~~l~~l  250 (254)
                      ...+...+.+.++.+++...  .++..+|+|++    ||++++++++.+|.++++|||+.+       ||......+.+.
T Consensus        63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~  142 (211)
T 3asz_A           63 DAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR  142 (211)
T ss_dssp             GGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence            44556677778887776533  34557888864    677888888888888888998888       888777777666


Q ss_pred             hh
Q 025366          251 FD  252 (254)
Q Consensus       251 l~  252 (254)
                      +.
T Consensus       143 l~  144 (211)
T 3asz_A          143 LK  144 (211)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=99.66  E-value=9.3e-18  Score=147.59  Aligned_cols=129  Identities=10%  Similarity=0.050  Sum_probs=77.0

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC-CCC-------------CeEEEeeCCCCCC
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV-KPP-------------DVATVLPMDGFHL  162 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~-~~~-------------~~g~~i~~~~~~~  162 (254)
                      .+++|++++|++++|+||||||||||++.|+|+++   |+.|+ .+.+.. .+.             ..+. +.++....
T Consensus        91 ~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~-v~q~~~~~  166 (302)
T 3b9q_A           91 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI-VVAEGDKA  166 (302)
T ss_dssp             CSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE-ECCC--CC
T ss_pred             cccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH---HcCCeEEEEeecccchhHHHHHHHHHHhcCceE-EEecCCcc
Confidence            57899999999999999999999999999999997   77776 333211 110             1122 22211100


Q ss_pred             CCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc--EEEEeCCCCC
Q 025366          163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLF  238 (254)
Q Consensus       163 ~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~--vlIlDEp~~~  238 (254)
                       .+..++.+++.+... .+.    +    ..+++.+++.  .+.++.+||   +||+++|++++.+|+  +|++| ||++
T Consensus       167 -~~~~~v~e~l~~~~~-~~~----d----~~lldt~gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg  232 (302)
T 3b9q_A          167 -KAATVLSKAVKRGKE-EGY----D----VVLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG  232 (302)
T ss_dssp             -CHHHHHHHHHHHHHH-TTC----S----EEEECCCCCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred             -CHHHHHHHHHHHHHH-cCC----c----chHHhcCCCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence             001122333322111 000    0    0011111111  112233566   899999999999999  99999 9999


Q ss_pred             CCHHHH
Q 025366          239 LDGGVW  244 (254)
Q Consensus       239 lD~~~~  244 (254)
                      +|+..+
T Consensus       233 lD~~~~  238 (302)
T 3b9q_A          233 LNMLPQ  238 (302)
T ss_dssp             GGGHHH
T ss_pred             cCHHHH
Confidence            999755

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.64  E-value=4e-17  Score=134.57  Aligned_cols=170  Identities=11%  Similarity=0.025  Sum_probs=89.2

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh--cccCCCCce-ecCCCCCCCCeE
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI--NKIWPQKAS-SFDSQVKPPDVA  152 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll--~~~~p~~G~-~~~~~~~~~~~g  152 (254)
                      .+|+++|+++.|+. .    ++++  |.+.+|..++|+|+||||||||++.|+|..  ....|+.|+ ...+.......-
T Consensus         2 ~~l~~~~~~~~~~~-~----~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~   74 (210)
T 1pui_A            2 TNLNYQQTHFVMSA-P----DIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGK   74 (210)
T ss_dssp             ---------CEEEE-S----SGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTE
T ss_pred             cchhhhhhhheeec-C----CHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCE
Confidence            36899999999973 2    5577  899999999999999999999999999986  001166675 211100000001


Q ss_pred             EEeeCCCCCCCCcCCChhh----cHHHHHHHcC------------CCCCccHHHHHHHHHhhccCC---CCCCCCCChhh
Q 025366          153 TVLPMDGFHLYLSQLDAME----DPKEAHARRG------------APWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGV  213 (254)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~e----~~~~~~~~~g------------~~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~  213 (254)
                      .++...|+..........+    ..........            .........+...++..++..   ..++..+|+|+
T Consensus        75 ~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~  154 (210)
T 1pui_A           75 RLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGA  154 (210)
T ss_dssp             EEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHH
T ss_pred             EEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchh
Confidence            1223333321100000000    0111111000            011111223344444443321   23445789999


Q ss_pred             hhh-HhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          214 GDP-VEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       214 ~qr-v~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +|+ +..+++++.++.++++|||++++|....+++.+.+.
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~  194 (210)
T 1pui_A          155 RKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLD  194 (210)
T ss_dssp             HHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHH
Confidence            999 788998888888899999999999999999888775

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=99.64  E-value=6.6e-17  Score=141.41  Aligned_cols=125  Identities=22%  Similarity=0.286  Sum_probs=88.2

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHH------H
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEA------H  177 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~------~  177 (254)
                      -.++.+|||+|++|||||||++.|.+++.   +. |.       ....+.++.+|+++...   +..+++.+.      .
T Consensus        28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~---~~-g~-------~~~~~~iv~~D~f~~~~---~~~~~l~~~~~~~~l~   93 (290)
T 1odf_A           28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM---EK-YG-------GEKSIGYASIDDFYLTH---EDQLKLNEQFKNNKLL   93 (290)
T ss_dssp             CCSCEEEEEECCTTSSHHHHHHHHHHHHH---HH-HG-------GGSCEEEEEGGGGBCCH---HHHHHHHHHTTTCGGG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhh---hc-CC-------CCceEEEeccccccCCh---HHHHHHhccccccchh
Confidence            35689999999999999999999999985   11 10       01234445999987642   233333322      1


Q ss_pred             HHcCCCCCccHHHHHHHHHhhccC------CCC----CCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHH
Q 025366          178 ARRGAPWTFNPLLLLNCLKNLRNQ------GSV----YAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGG  242 (254)
Q Consensus       178 ~~~g~~~~~~~~~~~~~l~~l~l~------~~~----~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~  242 (254)
                      ...|.+..++...+.+.++.+..+      ...    +-..+||||+||+++|++...+|+|||+||+++++|+.
T Consensus        94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ld~~  168 (290)
T 1odf_A           94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNPI  168 (290)
T ss_dssp             SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCCC
T ss_pred             hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCccccCCcc
Confidence            123468888888899999988776      222    33456899999999874432289999999999999984

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=99.62  E-value=5.2e-17  Score=145.82  Aligned_cols=130  Identities=10%  Similarity=0.047  Sum_probs=77.2

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCC-CCCC-------------CeEEEeeCCCCCC
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ-VKPP-------------DVATVLPMDGFHL  162 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~-~~~~-------------~~g~~i~~~~~~~  162 (254)
                      ..++|++++|++++|+||||||||||++.|+|+++   |+.|+ .+.+. ..+.             ..+. +.++....
T Consensus       148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~---~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~-v~q~~~~~  223 (359)
T 2og2_A          148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK---NEGTKVLMAAGDTFRAAASDQLEIWAERTGCEI-VVAEGDKA  223 (359)
T ss_dssp             CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEE-ECCSSSSC
T ss_pred             CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhcc---ccCCEEEEecccccccchhHHHHHHHHhcCeEE-EEeccccc
Confidence            46889999999999999999999999999999997   67666 33321 1110             1122 22211100


Q ss_pred             CCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc--EEEEeCCCCC
Q 025366          163 YLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLF  238 (254)
Q Consensus       163 ~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~--vlIlDEp~~~  238 (254)
                      . +..++.+++.+... .+.    +.    .+++.+++.  .+.++.+||   +||+++|++++.+|+  +|++| ||++
T Consensus       224 ~-p~~tv~e~l~~~~~-~~~----d~----~lldt~Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg  289 (359)
T 2og2_A          224 K-AATVLSKAVKRGKE-EGY----DV----VLCDTSGRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG  289 (359)
T ss_dssp             C-HHHHHHHHHHHHHH-TTC----SE----EEEECCCCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred             C-hhhhHHHHHHHHHh-CCC----HH----HHHHhcCCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence            0 01122333322211 000    00    001111111  112233566   899999999999999  99999 9999


Q ss_pred             CCHHHHH
Q 025366          239 LDGGVWK  245 (254)
Q Consensus       239 lD~~~~~  245 (254)
                      +|+..+.
T Consensus       290 lD~~~~~  296 (359)
T 2og2_A          290 LNMLPQA  296 (359)
T ss_dssp             GGGHHHH
T ss_pred             CCHHHHH
Confidence            9997653

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=99.61  E-value=3e-16  Score=139.57  Aligned_cols=92  Identities=11%  Similarity=0.135  Sum_probs=67.8

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      ++++++|.+++|++++|+||||||||||+++|+|+++   |++|.              +.+++.....  +....    
T Consensus       160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~---~~~g~--------------i~i~~~~e~~--~~~~~----  216 (330)
T 2pt7_A          160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIP---KEERI--------------ISIEDTEEIV--FKHHK----  216 (330)
T ss_dssp             HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSC---TTSCE--------------EEEESSCCCC--CSSCS----
T ss_pred             HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCc---CCCcE--------------EEECCeeccc--cccch----
Confidence            5699999999999999999999999999999999996   55554              3333321000  00000    


Q ss_pred             HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC
Q 025366          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (254)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~  237 (254)
                        ...++..                         .+||+||+++++||..+|++||+|||++
T Consensus       217 --~~i~~~~-------------------------ggg~~~r~~la~aL~~~p~ilildE~~~  251 (330)
T 2pt7_A          217 --NYTQLFF-------------------------GGNITSADCLKSCLRMRPDRIILGELRS  251 (330)
T ss_dssp             --SEEEEEC-------------------------BTTBCHHHHHHHHTTSCCSEEEECCCCS
T ss_pred             --hEEEEEe-------------------------CCChhHHHHHHHHhhhCCCEEEEcCCCh
Confidence              0000000                         0899999999999999999999999998

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=99.61  E-value=1.9e-17  Score=145.94  Aligned_cols=142  Identities=20%  Similarity=0.355  Sum_probs=96.0

Q ss_pred             eEEEecceeecccccceeccccceeeee-------------------CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNV-------------------NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ  137 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i-------------------~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~  137 (254)
                      +|++++|++.|+.      +++++++.+                   .+|+++||+||||||||||+++|+|++.. +|+
T Consensus        37 ~i~~~~v~~~y~~------~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~-~~~  109 (308)
T 1sq5_A           37 DLSLEEVAEIYLP------LSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSR-WPE  109 (308)
T ss_dssp             TCCHHHHHHTHHH------HHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTT-STT
T ss_pred             ccchHhHHHHHHH------HHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhh-CCC
Confidence            5889999999953      669999988                   88999999999999999999999999830 123


Q ss_pred             CceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCC-CCCCCCChhhhhh
Q 025366          138 KASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS-VYAPSFDHGVGDP  216 (254)
Q Consensus       138 ~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~-~~~~~lS~G~~qr  216 (254)
                      +|+           ..++.+|+++...   ......... ..++.+...+.......+..+..+.. ...|.|+....+|
T Consensus       110 ~G~-----------i~vi~~d~~~~~~---~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~~~~~~i~~P~~~~~~~~~  174 (308)
T 1sq5_A          110 HRR-----------VELITTDGFLHPN---QVLKERGLM-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDV  174 (308)
T ss_dssp             CCC-----------EEEEEGGGGBCCH---HHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHTTTCSCEEECCEETTTTEE
T ss_pred             CCe-----------EEEEecCCccCcH---HHHHhCCEe-ecCCCCCCccHHHHHHHHHHHhCCCCceecccccccccCc
Confidence            331           2235557765321   000000000 11233334455555566666655544 6678888888888


Q ss_pred             HhhhhhhcCCCcEEEEeCCCCCCC
Q 025366          217 VEDDILVGLQHKVVIVDGNYLFLD  240 (254)
Q Consensus       217 v~ia~al~~~p~vlIlDEp~~~lD  240 (254)
                      +..+.+.+.+++++|+|+|+++.+
T Consensus       175 ~~~~~~~~~~~~ivIlEG~~l~~~  198 (308)
T 1sq5_A          175 IPDGDKTVVQPDILILEGLNVLQS  198 (308)
T ss_dssp             CTTCCEEEC-CCEEEEECTTTTCC
T ss_pred             ccccceecCCCCEEEECchhhCCC
Confidence            876656667889999999999987

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=99.59  E-value=2.2e-16  Score=141.29  Aligned_cols=144  Identities=11%  Similarity=0.045  Sum_probs=88.4

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEE
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATV  154 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~  154 (254)
                      .++++++++++.|+..   +.+++++ |.|.+|+++||+||||||||||+++|+|+..   |+.|.              
T Consensus        43 ~~~i~~~~l~~~~~tg---~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~---~~~g~--------------  101 (347)
T 2obl_A           43 PDPLLRQVIDQPFILG---VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS---ADIIV--------------  101 (347)
T ss_dssp             SCSTTCCCCCSEECCS---CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEE--------------
T ss_pred             CCCeeecccceecCCC---CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCC---CCEEE--------------
Confidence            3568899999999832   2277999 9999999999999999999999999999985   54443              


Q ss_pred             eeCCCCCCCCcCCChhhcH-----HHHHHHcCC-CCC--ccHHHHHH------HHHhhcc-CCC-----CCCCCCChhhh
Q 025366          155 LPMDGFHLYLSQLDAMEDP-----KEAHARRGA-PWT--FNPLLLLN------CLKNLRN-QGS-----VYAPSFDHGVG  214 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~-----~~~~~~~g~-~~~--~~~~~~~~------~l~~l~l-~~~-----~~~~~lS~G~~  214 (254)
                      +...|....    .+.+..     ....+...+ .+.  ....++..      +.+.+.. +.+     ..+..||+|| 
T Consensus       102 i~~~G~~~~----ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~~~~~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-  176 (347)
T 2obl_A          102 LALIGERGR----EVNEFLALLPQSTLSKCVLVVTTSDRPALERMKAAFTATTIAEYFRDQGKNVLLMMDSVTRYARAA-  176 (347)
T ss_dssp             EEEESCCHH----HHHHHHTTSCHHHHTTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-
T ss_pred             EEEecccHH----HHHHHHHhhhhhhhhceEEEEECCCCCHHHHHHHHHHHHHHHHHHHhccccHHHHHhhHHHHHHHH-
Confidence            222222100    000000     000000000 000  01111111      1111111 111     3456789999 


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++|   +.+|++      +.|+|+....++.+++++
T Consensus       177 r~v~la---l~~p~~------t~Gldp~~~~~l~~ller  206 (347)
T 2obl_A          177 RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLER  206 (347)
T ss_dssp             HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTT
T ss_pred             HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHH
Confidence            899988   366666      899999999999999865

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=99.58  E-value=3.7e-16  Score=156.73  Aligned_cols=132  Identities=15%  Similarity=0.104  Sum_probs=82.1

Q ss_pred             ceEEEec-----ceeec-ccccceeccccceeeeeCC-------CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceec
Q 025366           76 PVVEARC-----MDEVY-DALAQRLLPTSALASNVNV-------KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF  142 (254)
Q Consensus        76 ~~l~i~~-----l~~~y-~~~~~~vlal~~vsl~i~~-------GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~  142 (254)
                      ++|++++     |++.| ++.  .  +++|++|++++       |++++|+||||||||||||+| |++.   +      
T Consensus       749 ~~l~i~~~rHP~l~~~~~~~~--~--v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~---~------  814 (1022)
T 2o8b_B          749 PFLELKGSRHPCITKTFFGDD--F--IPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA---V------  814 (1022)
T ss_dssp             CCEEEEEECCCC------CCC--C--CCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH---H------
T ss_pred             ceEEEEeccccEEEEEecCCc--e--EeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH---H------
Confidence            4699999     99999 442  2  56999999987       899999999999999999999 9874   1      


Q ss_pred             CCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhh
Q 025366          143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       143 ~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~a  222 (254)
                           ....|.+++++...     +++.+++..   ..|..+.                .......|+++|.+ ++++++
T Consensus       815 -----~aqiG~~Vpq~~~~-----l~v~d~I~~---rig~~d~----------------~~~~~stf~~em~~-~a~al~  864 (1022)
T 2o8b_B          815 -----MAQMGCYVPAEVCR-----LTPIDRVFT---RLGASDR----------------IMSGESTFFVELSE-TASILM  864 (1022)
T ss_dssp             -----HHTTTCCEESSEEE-----ECCCSBEEE---ECC-------------------------CHHHHHHHH-HHHHHH
T ss_pred             -----HhheeEEeccCcCC-----CCHHHHHHH---HcCCHHH----------------HhhchhhhHHHHHH-HHHHHH
Confidence                 11223223333211     232222200   1121100                01123466777765 899999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHH-HHHHHHh
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVW-KDVSSMF  251 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~-~~l~~ll  251 (254)
                      ++.+|++||||||+.|+|+... ..+.+++
T Consensus       865 la~~~sLlLLDEp~~Gtd~~dg~~~~~~il  894 (1022)
T 2o8b_B          865 HATAHSLVLVDELGRGTATFDGTAIANAVV  894 (1022)
T ss_dssp             HCCTTCEEEEECTTTTSCHHHHHHHHHHHH
T ss_pred             hCCCCcEEEEECCCCCCChHHHHHHHHHHH
Confidence            9999999999999999998763 3344444

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=99.58  E-value=2.1e-17  Score=146.32  Aligned_cols=139  Identities=25%  Similarity=0.402  Sum_probs=103.1

Q ss_pred             ceeecccccceeccccceeeeeCCCe------EEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEee
Q 025366           83 MDEVYDALAQRLLPTSALASNVNVKH------IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLP  156 (254)
Q Consensus        83 l~~~y~~~~~~vlal~~vsl~i~~Ge------ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~  156 (254)
                      |+..|++..    ++.+++..+.++.      ++||+||||||||||+++|++++.. +|+.          ...+ ++.
T Consensus        66 l~~~~~~~~----~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~-~~~~----------~~v~-~i~  129 (321)
T 3tqc_A           66 LSFYVTARQ----TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSR-WPDH----------PNVE-VIT  129 (321)
T ss_dssp             HHHHHHHHH----HHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTT-STTC----------CCEE-EEE
T ss_pred             HHHhhcchH----HHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcc-cCCC----------CeEE-EEe
Confidence            344555533    5677777776665      9999999999999999999999841 1111          2334 489


Q ss_pred             CCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC-CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCC
Q 025366          157 MDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN  235 (254)
Q Consensus       157 ~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp  235 (254)
                      +|+++.....   .+. ......+|.++.++...+.+.++.+..+. .+..|.||++..+|+......+..++|||+||+
T Consensus       130 ~D~f~~~~~~---l~~-~~~~~~~g~P~~~D~~~l~~~L~~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi  205 (321)
T 3tqc_A          130 TDGFLYSNAK---LEK-QGLMKRKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGL  205 (321)
T ss_dssp             GGGGBCCHHH---HHH-TTCGGGTTSGGGBCHHHHHHHHHHHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECT
T ss_pred             ecccccchhh---hhh-HHHHhhccCcccccHHHHHHHHHhhhccccccccchhhhhccccccCceeeccCCCEEEEEcc
Confidence            9998754311   110 01113467788899999999999998887 788999999999998766666789999999999


Q ss_pred             CCCCCH
Q 025366          236 YLFLDG  241 (254)
Q Consensus       236 ~~~lD~  241 (254)
                      +...|+
T Consensus       206 ~lL~~~  211 (321)
T 3tqc_A          206 NILQTG  211 (321)
T ss_dssp             TTTCCC
T ss_pred             cccccc
Confidence            999987

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=99.57  E-value=4.1e-17  Score=150.32  Aligned_cols=147  Identities=10%  Similarity=0.031  Sum_probs=90.2

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC---C----
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV---K----  147 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~---~----  147 (254)
                      ++++++++++.|+..   +.+++++ |++.+|++++|+||||||||||+++|+|+..   |+.|. .+.|+.   .    
T Consensus       130 ~~l~~~~v~~~~~tg---~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~---~~~G~i~~~G~r~~ev~~~~  202 (438)
T 2dpy_A          130 NPLQRTPIEHVLDTG---VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR---ADVIVVGLIGERGREVKDFI  202 (438)
T ss_dssp             CTTTSCCCCSBCCCS---CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC---CSEEEEEEESCCHHHHHHHH
T ss_pred             CceEEeccceecCCC---ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccC---CCeEEEEEeceecHHHHHHH
Confidence            468899999999732   1277999 9999999999999999999999999999995   66655 233320   0    


Q ss_pred             ---------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHh
Q 025366          148 ---------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVE  218 (254)
Q Consensus       148 ---------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~  218 (254)
                               ....+. +.+++.... ..+++.++..+....+.. +.          +.+.. .-..+..||+|| ||++
T Consensus       203 ~~~~~~~~l~r~i~~-v~q~~~~~~-~~~~v~~~~~~~ae~~~~-~~----------~~v~~-~ld~l~~lS~g~-qrvs  267 (438)
T 2dpy_A          203 ENILGPDGRARSVVI-AAPADVSPL-LRMQGAAYATRIAEDFRD-RG----------QHVLL-IMDSLTRYAMAQ-REIA  267 (438)
T ss_dssp             HTTTHHHHHHTEEEE-EECTTSCHH-HHHHHHHHHHHHHHHHHT-TT----------CEEEE-EEECHHHHHHHH-HHHH
T ss_pred             HhhccccccCceEEE-EECCCCCHH-HHHHHHHHHHHHHHHHHh-CC----------CCHHH-HHHhHHHHHHHH-HHHH
Confidence                     001121 222211100 001111211111111000 00          00000 001245689999 9999


Q ss_pred             hhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          219 DDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       219 ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|   +.+|++      ++++|+.....+.+++++
T Consensus       268 lA---l~~p~~------t~glD~~~~~~l~~ll~r  293 (438)
T 2dpy_A          268 LA---IGEPPA------TKGYPPSVFAKLPALVER  293 (438)
T ss_dssp             HH---TTCCCC------SSSCCTTHHHHHHHHHTT
T ss_pred             HH---hCCCcc------cccCCHHHHHHHHHHHHH
Confidence            98   677877      999999999999998864

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=99.57  E-value=4e-15  Score=129.74  Aligned_cols=37  Identities=14%  Similarity=0.146  Sum_probs=35.6

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +|+++++.+++|++++|+||||||||||++.|+|.+.
T Consensus        24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~   60 (296)
T 1cr0_A           24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWG   60 (296)
T ss_dssp             THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999999985

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=99.56  E-value=1.8e-16  Score=157.07  Aligned_cols=116  Identities=17%  Similarity=0.082  Sum_probs=74.9

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      +++|++|++++|++++|+||||||||||||+|+++.-.  +..|..     .+..... +.....        ...    
T Consensus       662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~--aq~g~~-----vpa~~~~-i~~~d~--------i~~----  721 (918)
T 3thx_B          662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM--AQIGSY-----VPAEEAT-IGIVDG--------IFT----  721 (918)
T ss_dssp             CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--HHHTCC-----BSSSEEE-EECCSE--------EEE----
T ss_pred             ecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--hhcCcc-----ccchhhh-hhHHHH--------HHH----
Confidence            56999999999999999999999999999999876520  111100     0111111 111000        000    


Q ss_pred             HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHH-HHh
Q 025366          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVS-SMF  251 (254)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~-~ll  251 (254)
                         ..+..            +    ........||+||++++.++++ +.+|++||||||++|+|+.....+. .++
T Consensus       722 ---~ig~~------------d----~l~~~~stfs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il  778 (918)
T 3thx_B          722 ---RMGAA------------D----NIYKGRSTFMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATL  778 (918)
T ss_dssp             ---EC--------------------------CCHHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             ---hCChH------------H----HHHHhHHHhhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence               01100            0    0122346789999999999888 6899999999999999998877775 444

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.56  E-value=1.1e-15  Score=143.71  Aligned_cols=137  Identities=12%  Similarity=0.033  Sum_probs=91.0

Q ss_pred             eEEEecceeecccccceeccccc-eeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEe
Q 025366           77 VVEARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVL  155 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~-vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i  155 (254)
                      .+++++++..|+..       +. ++..+.+|++++|+|+||||||||++.++|+..   + .|+          ...++
T Consensus       257 ~~~~~~l~~g~~~l-------d~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~---~-~G~----------~vi~~  315 (525)
T 1tf7_A          257 RSSNVRVSSGVVRL-------DEMCGGGFFKDSIILATGATGTGKTLLVSRFVENAC---A-NKE----------RAILF  315 (525)
T ss_dssp             CCCCCEECCSCHHH-------HHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHH---T-TTC----------CEEEE
T ss_pred             ccccceeecChHHH-------HHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH---h-CCC----------CEEEE
Confidence            35566666656432       22 245899999999999999999999999999985   3 231          11112


Q ss_pred             eCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc--CCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEe
Q 025366          156 PMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN--QGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVD  233 (254)
Q Consensus       156 ~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l--~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlD  233 (254)
                      ....        +.. .+......+++    +...   +. ..++  ..+.++..||+||+||+.+|+++..+|++||+|
T Consensus       316 ~~ee--------~~~-~l~~~~~~~g~----~~~~---~~-~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD  378 (525)
T 1tf7_A          316 AYEE--------SRA-QLLRNAYSWGM----DFEE---ME-RQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID  378 (525)
T ss_dssp             ESSS--------CHH-HHHHHHHTTSC----CHHH---HH-HTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             EEeC--------CHH-HHHHHHHHcCC----CHHH---HH-hCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc
Confidence            2211        111 11111122332    1121   21 2221  245566789999999999999999999999999


Q ss_pred             CCCCCCCHH-----HHHHHHHHhh
Q 025366          234 GNYLFLDGG-----VWKDVSSMFD  252 (254)
Q Consensus       234 Ep~~~lD~~-----~~~~l~~ll~  252 (254)
                       |+++||..     .++.+.+++.
T Consensus       379 -p~~~Ld~~~~~~~~~~~i~~ll~  401 (525)
T 1tf7_A          379 -SLSALARGVSNNAFRQFVIGVTG  401 (525)
T ss_dssp             -CHHHHTSSSCHHHHHHHHHHHHH
T ss_pred             -ChHHHHhhCChHHHHHHHHHHHH
Confidence             99999999     8888888764

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=99.55  E-value=2.8e-14  Score=127.14  Aligned_cols=50  Identities=10%  Similarity=0.131  Sum_probs=44.2

Q ss_pred             CCCCCCChhhhh------hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          204 VYAPSFDHGVGD------PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       204 ~~~~~lS~G~~q------rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .++..||+||+|      |+++|++++.+|++|||||||++||+..+..+.+++.+
T Consensus       244 ~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~  299 (339)
T 3qkt_A          244 RPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER  299 (339)
T ss_dssp             ECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHH
T ss_pred             CChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHH
Confidence            456789999999      66778888889999999999999999999999988753

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.55  E-value=1.9e-16  Score=139.10  Aligned_cols=142  Identities=13%  Similarity=0.064  Sum_probs=64.2

Q ss_pred             ecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHh-hcccCCCCceecCCCCC-----CCCeEEE
Q 025366           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR-INKIWPQKASSFDSQVK-----PPDVATV  154 (254)
Q Consensus        81 ~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gl-l~~~~p~~G~~~~~~~~-----~~~~g~~  154 (254)
                      +||++.|++..    ++++++|+|      +|+|+||+|||||+++|+|. +.   |++|..+.|...     ....+..
T Consensus         2 ~~l~~~~~~~~----~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~---~~~gi~~~g~~~~~t~~~~~~~~~   68 (301)
T 2qnr_A            2 SNLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTDLY---PERVISGAAEKIERTVQIEASTVE   68 (301)
T ss_dssp             --------------------CEEE------EEEEETTSSHHHHHHHHHC---------------------------CEEE
T ss_pred             CCCcceECCEE----EEcCCCEEE------EEECCCCCCHHHHHHHHhCCCcc---CCCCcccCCcccCCcceEeeEEEE
Confidence            47899998744    679999998      99999999999999999987 54   777721222111     1112332


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeC
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDE  234 (254)
                      +..++...   .+++++.+.+..... ..+     .+..+.+.+....+.++..+|+|++||+.+|++++    +|++||
T Consensus        69 ~q~~~~~~---~ltv~Dt~g~~~~~~-~~e-----~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~----ll~lde  135 (301)
T 2qnr_A           69 IEERGVKL---RLTVVDTPGYGDAIN-CRD-----CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHC----CFYFIS  135 (301)
T ss_dssp             EC---CCE---EEEEEEEC-----------------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCE----EEEEEC
T ss_pred             ecCCCccc---CcchhhhhhhhhhcC-cHH-----HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhh----eeeeec
Confidence            22222211   245555544321110 000     01111111111123456789999999999999885    999999


Q ss_pred             CCCC-CCHHHHHHHH
Q 025366          235 NYLF-LDGGVWKDVS  248 (254)
Q Consensus       235 p~~~-lD~~~~~~l~  248 (254)
                      |+.. ||+...+.+.
T Consensus       136 Pt~~~Ld~~~~~~l~  150 (301)
T 2qnr_A          136 PFGHGLKPLDVAFMK  150 (301)
T ss_dssp             SSSSSCCHHHHHHHH
T ss_pred             CcccCCCHHHHHHHH
Confidence            9985 9997754333

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=99.52  E-value=7.2e-16  Score=127.96  Aligned_cols=124  Identities=31%  Similarity=0.536  Sum_probs=78.6

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCC
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAP  183 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~  183 (254)
                      .++|++++|+||||||||||+++|+|++.   |. |         +..|. +.++++++...   ..++... ....+.+
T Consensus        19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~---~~-g---------~~~g~-v~~d~~~~~~~---~~~~~~~-~~~~~~~   80 (208)
T 3c8u_A           19 QPGRQLVALSGAPGSGKSTLSNPLAAALS---AQ-G---------LPAEV-VPMDGFHLDNR---LLEPRGL-LPRKGAP   80 (208)
T ss_dssp             CCSCEEEEEECCTTSCTHHHHHHHHHHHH---HT-T---------CCEEE-EESGGGBCCHH---HHGGGTC-GGGTTSG
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHh---hc-C---------CceEE-EecCCCcCCHH---HHHHhcc-cccCCCC
Confidence            57899999999999999999999999994   21 1         24565 88998865321   1111100 0123445


Q ss_pred             CCccHHHHHHHHHhhccCCCCCCC------CCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          184 WTFNPLLLLNCLKNLRNQGSVYAP------SFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       184 ~~~~~~~~~~~l~~l~l~~~~~~~------~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      ..++...+.+.+..+..+.....+      ..|+|++|+++.      .++++|+|+++..+|+..|..+.+.+
T Consensus        81 ~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~------~~~~~i~eg~~~l~de~~~~~l~~~~  148 (208)
T 3c8u_A           81 ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGP------ECRVAIIEGNYLLFDAPGWRDLTAIW  148 (208)
T ss_dssp             GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECT------TCCEEEEEESSTTBCSTTGGGGGGTC
T ss_pred             chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcC------CCcEEEECCceeccCCchhHHHHHhc
Confidence            556666666677766555333323      346777777653      34678888888878776555444433

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=99.51  E-value=1e-14  Score=130.93  Aligned_cols=49  Identities=16%  Similarity=0.063  Sum_probs=44.9

Q ss_pred             CCC-CCChhhhhhHhhhhhhc---------CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          205 YAP-SFDHGVGDPVEDDILVG---------LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       205 ~~~-~lS~G~~qrv~ia~al~---------~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++. .+|+||+||+++|++|+         .+|+||||||||++||+..+..+.+++.+
T Consensus       261 ~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~  319 (359)
T 2o5v_A          261 PASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAAS  319 (359)
T ss_dssp             EHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHH
T ss_pred             chhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHh
Confidence            344 69999999999999999         89999999999999999999999998854

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=99.51  E-value=1.8e-14  Score=140.71  Aligned_cols=112  Identities=22%  Similarity=0.225  Sum_probs=74.2

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      +++|++|+   |++++|+||||||||||+|+|+|+..  .++.|..+     +..... +.+-...+.  .+++.+    
T Consensus       568 vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~--~~~~G~~v-----pa~~~~-i~~v~~i~~--~~~~~d----  630 (765)
T 1ewq_A          568 VPNDLEMA---HELVLITGPNMAGKSTFLRQTALIAL--LAQVGSFV-----PAEEAH-LPLFDGIYT--RIGASD----  630 (765)
T ss_dssp             CCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHH--HHTTTCCB-----SSSEEE-ECCCSEEEE--ECCC------
T ss_pred             EeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhh--hcccCcee-----ehhccc-eeeHHHhhc--cCCHHH----
Confidence            56999998   99999999999999999999999862  03444311     111111 111000000  011111    


Q ss_pred             HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhh--cCCCcEEEEeCC---CCCCCHHHH-HHHHH
Q 025366          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGN---YLFLDGGVW-KDVSS  249 (254)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al--~~~p~vlIlDEp---~~~lD~~~~-~~l~~  249 (254)
                                           ++       ...+|+++++++.+++++  +.+|+++|+|||   |+++|.... ..+.+
T Consensus       631 ---------------------~l-------~~g~S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~  682 (765)
T 1ewq_A          631 ---------------------DL-------AGGKSTFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAE  682 (765)
T ss_dssp             --------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             ---------------------HH-------HhcccHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHH
Confidence                                 01       123689999999999999  999999999999   999998765 45666


Q ss_pred             Hhh
Q 025366          250 MFD  252 (254)
Q Consensus       250 ll~  252 (254)
                      .+.
T Consensus       683 ~L~  685 (765)
T 1ewq_A          683 ALH  685 (765)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=99.51  E-value=2.6e-14  Score=141.97  Aligned_cols=110  Identities=13%  Similarity=0.040  Sum_probs=68.6

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      +++|++|++++|++++|+||||||||||+|+|++..-  .+..|..      .|..+..+...+.        ...    
T Consensus       651 v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~--~aq~G~~------vpa~~~~~~~~d~--------i~~----  710 (934)
T 3thx_A          651 IPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVL--MAQIGCF------VPCESAEVSIVDC--------ILA----  710 (934)
T ss_dssp             CCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHH--HHHHTCC------BSEEEEEEECCSE--------EEE----
T ss_pred             ecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHH--HHhcCCc------cccccccchHHHH--------HHH----
Confidence            5699999999999999999999999999999954431  0111100      1111111111100        000    


Q ss_pred             HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhh--cCCCcEEEEeCCCCCCCHHHHHHH
Q 025366          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILV--GLQHKVVIVDGNYLFLDGGVWKDV  247 (254)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al--~~~p~vlIlDEp~~~lD~~~~~~l  247 (254)
                         ..|.                  . +.....+|++++++..+++++  +.+|++||||||++|+|+.....+
T Consensus       711 ---~ig~------------------~-d~l~~~lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i  762 (934)
T 3thx_A          711 ---RVGA------------------G-DSQLKGVSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGL  762 (934)
T ss_dssp             ---ECC----------------------------CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHH
T ss_pred             ---hcCc------------------h-hhHHHhHhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHH
Confidence               1111                  1 111245677777777777777  899999999999999999877666

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=99.50  E-value=1.2e-14  Score=125.20  Aligned_cols=113  Identities=14%  Similarity=0.095  Sum_probs=72.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCC-Cce-ecCCCCCCCCeEEE
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQ-KAS-SFDSQVKPPDVATV  154 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~-~G~-~~~~~~~~~~~g~~  154 (254)
                      ++++++|.+.  .      +|++++  +++|++++|+||||||||||+++|+|+++   |+ +|+ .+.++..    .  
T Consensus         5 ~~~l~~l~~~--~------vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~---~~~~G~I~~~g~~i----~--   65 (261)
T 2eyu_A            5 IPEFKKLGLP--D------KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN---QTKSYHIITIEDPI----E--   65 (261)
T ss_dssp             -CCGGGSSCC--T------HHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHH---HHCCCEEEEEESSC----C--
T ss_pred             CCChHHCCCH--H------HHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCC---CCCCCEEEEcCCcc----e--
Confidence            3456677642  1      669998  89999999999999999999999999996   55 565 2222210    0  


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeC
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDG  234 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDE  234 (254)
                           + ........            +.+.           .+++.    ...      -|++++++|..+|++|++||
T Consensus        66 -----~-~~~~~~~~------------v~q~-----------~~gl~----~~~------l~~~la~aL~~~p~illlDE  106 (261)
T 2eyu_A           66 -----Y-VFKHKKSI------------VNQR-----------EVGED----TKS------FADALRAALREDPDVIFVGE  106 (261)
T ss_dssp             -----S-CCCCSSSE------------EEEE-----------EBTTT----BSC------HHHHHHHHHHHCCSEEEESC
T ss_pred             -----e-ecCCccee------------eeHH-----------HhCCC----HHH------HHHHHHHHHhhCCCEEEeCC
Confidence                 0 00000000            0000           11111    011      28999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHH
Q 025366          235 NYLFLDGGVWKDVSSM  250 (254)
Q Consensus       235 p~~~lD~~~~~~l~~l  250 (254)
                      |+   |+.....+.+.
T Consensus       107 p~---D~~~~~~~l~~  119 (261)
T 2eyu_A          107 MR---DLETVETALRA  119 (261)
T ss_dssp             CC---SHHHHHHHHHH
T ss_pred             CC---CHHHHHHHHHH
Confidence            99   98876655443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.50  E-value=1.1e-14  Score=133.17  Aligned_cols=143  Identities=10%  Similarity=-0.012  Sum_probs=76.3

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce---ecCCCC-CC-C
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS---SFDSQV-KP-P  149 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~---~~~~~~-~~-~  149 (254)
                      ..+|++++|++.|++..    ++++++|+|      +|+|+||||||||+++|+|...   +..|.   ...... .. .
T Consensus         9 ~~~l~~~~l~~~y~~~~----vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~---~~~~~~~~~~~~~~t~~~~   75 (418)
T 2qag_C            9 EGYVGFANLPNQVYRKS----VKRGFEFTL------MVVGESGLGKSTLINSLFLTDL---YSPEYPGPSHRIKKTVQVE   75 (418)
T ss_dssp             ------CCCCCCTTTTT----CC-CCCEEE------EEECCTTSSHHHHHHHHTTCCC---CCCCCCSCC-----CCEEE
T ss_pred             cCcEEEEecceeECCEE----EecCCCEEE------EEECCCCCcHHHHHHHHhCCCC---CCCCCCCcccCCccceeee
Confidence            35799999999998744    679999998      9999999999999999999874   44432   111100 00 0


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCc-
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK-  228 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~-  228 (254)
                      ..+.++..++..   ..+++++++.+......   ......+.+.++          ..|+.++++|++++++++.+|+ 
T Consensus        76 ~i~~v~q~~~~~---~~Ltv~Dt~g~~~~~~~---~~~~~~i~~~i~----------~~~~~~l~qr~~IaRal~~d~~~  139 (418)
T 2qag_C           76 QSKVLIKEGGVQ---LLLTIVDTPGFGDAVDN---SNCWQPVIDYID----------SKFEDYLNAESRVNRRQMPDNRV  139 (418)
T ss_dssp             EEECC------C---EEEEEEECC--------------CHHHHHHHH----------HHHHHHTTTSCC-CCCCCCCC-C
T ss_pred             eEEEEEecCCcc---cceeeeechhhhhhccc---hhhHHHHHHHHH----------HHHHHHHHHHHHHHHHhccCCCe
Confidence            011111111111   12455665544221100   001112222222          1345678899999999999999 


Q ss_pred             --EEEEeCCC-CCCCHHHHHH
Q 025366          229 --VVIVDGNY-LFLDGGVWKD  246 (254)
Q Consensus       229 --vlIlDEp~-~~lD~~~~~~  246 (254)
                        +|++|||+ .++|+....-
T Consensus       140 ~vlL~ldePt~~~L~~~d~~~  160 (418)
T 2qag_C          140 QCCLYFIAPSGHGLKPLDIEF  160 (418)
T ss_dssp             CEEEEECCC-CCSCCHHHHHH
T ss_pred             eEEEEEecCcccCCCHHHHHH
Confidence              99999999 6999876433

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=99.50  E-value=8.5e-17  Score=132.27  Aligned_cols=47  Identities=9%  Similarity=0.017  Sum_probs=39.0

Q ss_pred             CCCChhhhhhHh-hhh---hhcCCCcEEEEeC--CCCCCCHHHHHHHHHHhhc
Q 025366          207 PSFDHGVGDPVE-DDI---LVGLQHKVVIVDG--NYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       207 ~~lS~G~~qrv~-ia~---al~~~p~vlIlDE--p~~~lD~~~~~~l~~ll~~  253 (254)
                      ..+|+||++++. +.+   |+..+|+|||+||  |+..+|+..++.+.++++.
T Consensus        82 ~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~  134 (189)
T 2i3b_A           82 VDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST  134 (189)
T ss_dssp             ECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC
T ss_pred             EcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC
Confidence            357889998884 344   5789999999999  8988999999999998864

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=99.49  E-value=2.1e-17  Score=137.18  Aligned_cols=35  Identities=31%  Similarity=0.451  Sum_probs=26.1

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++|  .++++|++++|+||||||||||+|+|+|+++
T Consensus        11 ~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           11 TARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ----------CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            4477  6899999999999999999999999999983

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=99.44  E-value=1.9e-15  Score=142.23  Aligned_cols=144  Identities=10%  Similarity=0.055  Sum_probs=82.9

Q ss_pred             ceEEEecceeecccccceeccccceee-eeCCCeEEEEECCCCCcHHHHHHH--HHHhhcccCCCCceecCCCCCCCCeE
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALAS-NVNVKHIVGLAGPPGAGKSTLAAE--VVRRINKIWPQKASSFDSQVKPPDVA  152 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl-~i~~GeivgLiGpNGsGKSTLlk~--L~Gll~~~~p~~G~~~~~~~~~~~~g  152 (254)
                      .+++.+++.+.+.+..    +|++++| .+++|++++|+||||||||||+++  ++|+++   |++|             
T Consensus        11 ~~~~~~~~~~~~~g~~----~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~---~~~g-------------   70 (525)
T 1tf7_A           11 NNSEHQAIAKMRTMIE----GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE---FDEP-------------   70 (525)
T ss_dssp             ---CCSSCCEECCCCT----THHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH---HCCC-------------
T ss_pred             CCccccccccccCCch----hHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh---CCCC-------------
Confidence            3566677766665533    7899999 999999999999999999999999  789985   4444             


Q ss_pred             EEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---CCC----CCCCCCChhhhhhHhhhhhh-c
Q 025366          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---QGS----VYAPSFDHGVGDPVEDDILV-G  224 (254)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---~~~----~~~~~lS~G~~qrv~ia~al-~  224 (254)
                      . +.+++..      . ........+.+|+.    ....... .++..   ...    .....+.-+. ....+..+| .
T Consensus        71 ~-i~v~g~~------~-~~~~~~~~~~~g~~----~q~~~~~-~~l~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~LS~  136 (525)
T 1tf7_A           71 G-VFVTFEE------T-PQDIIKNARSFGWD----LAKLVDE-GKLFILDASPDPEGQEVVGGFDLSA-LIERINYAIQK  136 (525)
T ss_dssp             E-EEEESSS------C-HHHHHHHHGGGTCC----HHHHHHT-TSEEEEECCCCSSCCSCCSSHHHHH-HHHHHHHHHHH
T ss_pred             E-EEEEEeC------C-HHHHHHHHHHcCCC----hHHhhcc-CcEEEEecCcccchhhhhcccCHHH-HHHHHHHHHHH
Confidence            2 3344432      1 11112222234431    1111100 01111   000    0011111121 222334445 4


Q ss_pred             CCCcEEEEeCCCCC-----CCHHHHHHHHHHhhc
Q 025366          225 LQHKVVIVDGNYLF-----LDGGVWKDVSSMFDE  253 (254)
Q Consensus       225 ~~p~vlIlDEp~~~-----lD~~~~~~l~~ll~~  253 (254)
                      .+|++|++|||++.     +|+..++.+.+++.+
T Consensus       137 g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~  170 (525)
T 1tf7_A          137 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVAR  170 (525)
T ss_dssp             HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            68999999999985     588899999888753

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=99.44  E-value=3.6e-13  Score=116.47  Aligned_cols=130  Identities=15%  Similarity=0.090  Sum_probs=79.5

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCC-CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKP-PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG  181 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~-~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g  181 (254)
                      .+++|++++|+||||||||||++.|++.+.     .|..+.|.... .....++....        +. +.+.......+
T Consensus        26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~-----~g~~~~g~~~~~~~~v~~~~~e~--------~~-~~~~~r~~~~g   91 (279)
T 1nlf_A           26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA-----GGPDLLEVGELPTGPVIYLPAED--------PP-TAIHHRLHALG   91 (279)
T ss_dssp             TEETTSEEEEEESTTSSHHHHHHHHHHHHH-----TCCCTTCCCCCCCCCEEEEESSS--------CH-HHHHHHHHHHH
T ss_pred             CccCCCEEEEEcCCCCCHHHHHHHHHHHHh-----cCCCcCCCccCCCccEEEEECCC--------CH-HHHHHHHHHHH
Confidence            477999999999999999999999999773     34422222111 11111122211        11 11111111222


Q ss_pred             CCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC--CCCHHHH---HHHHHHh
Q 025366          182 APWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL--FLDGGVW---KDVSSMF  251 (254)
Q Consensus       182 ~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~--~lD~~~~---~~l~~ll  251 (254)
                      .  .........+++++.+.  .+..+..||+|+.+++   ++++.+|++||+|||++  ++|+...   .++.+.|
T Consensus        92 ~--~~~~~~~~~~~~~l~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L  163 (279)
T 1nlf_A           92 A--HLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRM  163 (279)
T ss_dssp             T--TSCHHHHHHHHHHEEECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHH
T ss_pred             h--hcChhhhhhccCceEEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHH
Confidence            2  22334455667777664  3456788999997766   46777999999999999  8887544   4444443

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=99.44  E-value=5.1e-16  Score=148.53  Aligned_cols=143  Identities=8%  Similarity=0.082  Sum_probs=69.7

Q ss_pred             eEEEecceeecccccceeccccce----------eeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCC-CCce-ecCC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSAL----------ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWP-QKAS-SFDS  144 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~v----------sl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p-~~G~-~~~~  144 (254)
                      .+++++|++.|+...+.++  +.+          +++++.   ++|+||||||||||+++|+|+..   | ++|+ .++|
T Consensus        10 ~i~~~~l~~~~~~~~r~ll--~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~---P~~sG~vt~~g   81 (608)
T 3szr_A           10 SVAENNLCSQYEEKVRPCI--DLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVAL---PRGSGIVTRCP   81 (608)
T ss_dssp             ----------CHHHHHHHH--HHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC----------CCCSC
T ss_pred             hhhhhhhhHHHHHHHHHHH--HHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCC---CCCCCeEEEcC
Confidence            5788999999986433222  322          355553   99999999999999999999985   7 6887 4444


Q ss_pred             CCC-------CCCeEEEeeCCCC--CCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhh
Q 025366          145 QVK-------PPDVATVLPMDGF--HLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGD  215 (254)
Q Consensus       145 ~~~-------~~~~g~~i~~~~~--~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~q  215 (254)
                      ...       .......+.+..+  .+. +..++.+++.+..                  ..+... .   .   +...+
T Consensus        82 ~~i~~~~~~~~~~~~~~i~~v~Q~~~l~-~~~tv~e~i~~~~------------------~~~~~~-~---~---~~s~~  135 (608)
T 3szr_A           82 LVLKLKKLVNEDKWRGKVSYQDYEIEIS-DASEVEKEINKAQ------------------NAIAGE-G---M---GISHE  135 (608)
T ss_dssp             EEEEEEECSSSSCCEEEESCC---CCCC-CHHHHHTTHHHHH------------------HHHHCS-S---S---CCCSC
T ss_pred             EEEEEecCCccccceeEEeeecccccCC-CHHHHHHHHHHHH------------------HHhcCC-c---c---ccchH
Confidence            210       0001111111000  000 0012222222111                  111110 0   1   12235


Q ss_pred             hHhhhhhhcCCCcEEEEeCC------CCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGN------YLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp------~~~lD~~~~~~l~~ll~~  253 (254)
                      ++.++.+....|+++|+|||      +++||+..+..+.+++..
T Consensus       136 ~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~  179 (608)
T 3szr_A          136 LITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK  179 (608)
T ss_dssp             CEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred             HHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence            56666667778999999999      999999999999888753

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=99.43  E-value=1.5e-14  Score=115.54  Aligned_cols=60  Identities=18%  Similarity=0.178  Sum_probs=51.3

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~  145 (254)
                      ++..++++.|++..    +++++||++++|++++|+||||||||||+|+|+|++    |++|+ .+++.
T Consensus         8 ~~~~~~~~~~g~~~----~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l----~~~G~V~~~g~   68 (158)
T 1htw_A            8 IPDEFSMLRFGKKF----AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI----GHQGNVKSPTY   68 (158)
T ss_dssp             ECSHHHHHHHHHHH----HHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT----TCCSCCCCCTT
T ss_pred             cCCHHHHHHHHHHH----HHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC----CCCCeEEECCE
Confidence            44557888997633    679999999999999999999999999999999998    88998 55553

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=99.41  E-value=2e-13  Score=113.79  Aligned_cols=113  Identities=19%  Similarity=0.182  Sum_probs=67.2

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~  182 (254)
                      .+++|++++|+||||||||||+++|+|+..   +..|..      ....+. +.+++....    . .+.+....+..++
T Consensus        21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~---~~~~~g------~~~~~~-i~~~~~~~~----~-~~~i~~~~~~~~~   85 (231)
T 4a74_A           21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQ---LPPEEG------GLNGSV-IWIDTENTF----R-PERIREIAQNRGL   85 (231)
T ss_dssp             SEESSEEEEEEESTTSSHHHHHHHHHHHTT---SCGGGT------CCSCEE-EEEESSSCC----C-HHHHHHHHHHTTS
T ss_pred             CCCCCcEEEEECCCCCCHHHHHHHHHHHHh---cccccC------CCCCEE-EEEECCCCC----C-HHHHHHHHHHcCC
Confidence            688999999999999999999999999764   322210      011122 444443211    1 1233333444443


Q ss_pred             CCCccHHHHHHHHHhhccCCCCCCCCCChhhh-hhHhhhhhhc-------CCCcEEEEeCCCCCCCHH
Q 025366          183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVG-DPVEDDILVG-------LQHKVVIVDGNYLFLDGG  242 (254)
Q Consensus       183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~-qrv~ia~al~-------~~p~vlIlDEp~~~lD~~  242 (254)
                      .    .   .++.+++.+..     .++.+++ +.+..+.+++       .+|++|++|||++++|+.
T Consensus        86 ~----~---~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~  141 (231)
T 4a74_A           86 D----P---DEVLKHIYVAR-----AFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE  141 (231)
T ss_dssp             C----H---HHHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHH
T ss_pred             C----H---HHHhhcEEEEe-----cCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccc
Confidence            2    1   15666665432     2334333 2244444443       489999999999999883

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=99.41  E-value=1.7e-14  Score=128.75  Aligned_cols=157  Identities=33%  Similarity=0.567  Sum_probs=116.4

Q ss_pred             cccceeeeeCCCeE--EEEECCCCCcHHHHHHHHHHhhcccC--------------------------------------
Q 025366           96 PTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIW--------------------------------------  135 (254)
Q Consensus        96 al~~vsl~i~~Gei--vgLiGpNGsGKSTLlk~L~Gll~~~~--------------------------------------  135 (254)
                      +++.+++.+++|++  ++|+|++||||||+.++|++.+...+                                      
T Consensus        11 il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~l~a~~~g~~~ir~~~~~a~d~D~~I~~~~g~~i~~i   90 (359)
T 2ga8_A           11 VLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHPNVIEVNDRLKPMVNLVDSLKTLQPNKVAEM   90 (359)
T ss_dssp             HHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHHHHHHSTTCCCEECTTSCCCCSSTTSEECCHHHHHHH
T ss_pred             HHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhCCCeeeecccccchHHHHHHHHhhhhhhhHHHHHhCccHHHH
Confidence            45888899999988  99999999999999999999764211                                      


Q ss_pred             -CCCceecC----------------------------CC--------------CCC---C---CeEEEeeCCCCCCCCcC
Q 025366          136 -PQKASSFD----------------------------SQ--------------VKP---P---DVATVLPMDGFHLYLSQ  166 (254)
Q Consensus       136 -p~~G~~~~----------------------------~~--------------~~~---~---~~g~~i~~~~~~~~~~~  166 (254)
                       ...|+.+.                            |.              ...   +   ....++++|||++++..
T Consensus        91 f~~~ge~fr~~E~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi~mDgFh~~~~~  170 (359)
T 2ga8_A           91 IENQGLFKDHVEDVNFQPVKYSALTSNNEECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRC  170 (359)
T ss_dssp             HHTTTCCGGGTTCTTCCCEEEEC-----CCCEEEECTTGGGGCEEECC------------CCCCSEEEEEGGGGBCCHHH
T ss_pred             HHHhcccchHHHhhhcccceeecccCCcccccccccccccccccccccccccccccccccccCCeEEEEecCcCCCCHHH
Confidence             00111000                            00              000   1   13556899999987765


Q ss_pred             CChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-----------------------------CCCCCCCCChhhhhhH
Q 025366          167 LDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-----------------------------GSVYAPSFDHGVGDPV  217 (254)
Q Consensus       167 l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-----------------------------~~~~~~~lS~G~~qrv  217 (254)
                      +...++......++|.|+.++...+.+.++.|..+                             ..+++|.|++...+++
T Consensus       171 L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~~P~yD~~~~d~~  250 (359)
T 2ga8_A          171 LDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFVPGFNHALKDPT  250 (359)
T ss_dssp             HTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETTCCCEEEEEEETTTTEEE
T ss_pred             HhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCcccccccccccccccccccccccccccCceEeeccccCccCCCC
Confidence            55555445566788999999999888888877554                             4567889999999998


Q ss_pred             hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      .-...+...++++|+|+.+..++...|..+.+++|
T Consensus       251 ~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D  285 (359)
T 2ga8_A          251 PDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLA  285 (359)
T ss_dssp             EEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHH
T ss_pred             CCceEecCCCCEEEEEeehhhccccchhhhhhccc
Confidence            87777777789999999989999778888888887

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=99.39  E-value=6e-14  Score=116.82  Aligned_cols=133  Identities=9%  Similarity=0.039  Sum_probs=77.2

Q ss_pred             cccceee-eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHH
Q 025366           96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (254)
Q Consensus        96 al~~vsl-~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~  174 (254)
                      .|+++.. .+++|++++|+||||||||||++.|++...   +..|           ...++..+        .+.. ...
T Consensus        11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~---~~~~-----------~v~~~~~~--------~~~~-~~~   67 (235)
T 2w0m_A           11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGL---RDGD-----------PCIYVTTE--------ESRD-SII   67 (235)
T ss_dssp             HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHH---HHTC-----------CEEEEESS--------SCHH-HHH
T ss_pred             HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHH---HCCC-----------eEEEEEcc--------cCHH-HHH
Confidence            5688887 799999999999999999999999998874   2222           11112221        1111 111


Q ss_pred             HHHHHcCCC-CCccHHHHHHHHHhhc--cCCCCCCCCCChhhhhhHhhhhhhcCCCc--EEEEeCCCCCC--CHHHHHHH
Q 025366          175 EAHARRGAP-WTFNPLLLLNCLKNLR--NQGSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFL--DGGVWKDV  247 (254)
Q Consensus       175 ~~~~~~g~~-~~~~~~~~~~~l~~l~--l~~~~~~~~lS~G~~qrv~ia~al~~~p~--vlIlDEp~~~l--D~~~~~~l  247 (254)
                      ......++. +...... ...++.+.  ..........|.++.++...+.+...+|+  +||+|||++++  |+..+.++
T Consensus        68 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~  146 (235)
T 2w0m_A           68 RQAKQFNWDFEEYIEKK-LIIIDALMKEKEDQWSLVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKI  146 (235)
T ss_dssp             HHHHHTTCCCGGGBTTT-EEEEECCC----CTTBCSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHH
T ss_pred             HHHHHhcchHHHHhhCC-EEEEeccccccCceeeecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHH
Confidence            112233432 1110000 00000000  00011112348888877776666667999  99999999777  98877777


Q ss_pred             HHHhh
Q 025366          248 SSMFD  252 (254)
Q Consensus       248 ~~ll~  252 (254)
                      .+.+.
T Consensus       147 ~~~l~  151 (235)
T 2w0m_A          147 SYYLK  151 (235)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=99.36  E-value=1.5e-13  Score=134.84  Aligned_cols=111  Identities=14%  Similarity=0.053  Sum_probs=64.8

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      +++|++|+ ++|++++|+||||||||||+|+|+|+...  ...|..+     +..... +.+....+.            
T Consensus       597 vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~--~q~G~~v-----pa~~~~-i~~~~~i~~------------  655 (800)
T 1wb9_A          597 IANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALM--AYIGSYV-----PAQKVE-IGPIDRIFT------------  655 (800)
T ss_dssp             CCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHH--HTTTCCB-----SSSEEE-ECCCCEEEE------------
T ss_pred             eeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHH--HhcCccc-----chhccc-ceeHHHHHh------------
Confidence            56999999 89999999999999999999999998620  1122100     111111 111000000            


Q ss_pred             HHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHH
Q 025366          176 AHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDV  247 (254)
Q Consensus       176 ~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l  247 (254)
                         ..+..            +++.    .....|+.+|++ ++.+...+.+|++||+|||++|+|+.....+
T Consensus       656 ---~~~~~------------d~l~----~~~stf~~e~~~-~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i  707 (800)
T 1wb9_A          656 ---RVGAA------------DDLA----SGRSTFMVEMTE-TANILHNATEYSLVLMDEIGRGTSTYDGLSL  707 (800)
T ss_dssp             ---EEC---------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCCCCSSSSHHHHH
T ss_pred             ---hCCHH------------HHHH----hhhhhhhHHHHH-HHHHHHhccCCCEEEEECCCCCCChhHHHHH
Confidence               01100            0010    112356777765 4444456789999999999999998655543

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=99.34  E-value=1.5e-12  Score=116.73  Aligned_cols=37  Identities=30%  Similarity=0.421  Sum_probs=32.2

Q ss_pred             cccceee-------eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           96 PTSALAS-------NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        96 al~~vsl-------~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .++++.+       .+.+|++++|+||||||||||+++|+|+++
T Consensus       105 ~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~  148 (356)
T 3jvv_A          105 TMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLN  148 (356)
T ss_dssp             CTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             CHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            4566655       677889999999999999999999999996

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.33  E-value=1.2e-14  Score=129.55  Aligned_cols=60  Identities=23%  Similarity=0.269  Sum_probs=54.0

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      .|++++++++++.|+...    ++++++|++.+|++++|+|+||||||||+++|+|++.   |+.|+
T Consensus        26 ~i~~ie~~~~~~~~~~~~----~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~---~~~g~   85 (337)
T 2qm8_A           26 AITLAESRRADHRAAVRD----LIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT---AAGHK   85 (337)
T ss_dssp             HHHHHTCSSHHHHHHHHH----HHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHH---HTTCC
T ss_pred             HHHHHeeCCcccccChHH----HHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhh---hCCCE
Confidence            466789999999997643    6799999999999999999999999999999999997   78887

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=99.33  E-value=8.6e-13  Score=118.09  Aligned_cols=121  Identities=19%  Similarity=0.166  Sum_probs=78.5

Q ss_pred             cccce-eeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHH
Q 025366           96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (254)
Q Consensus        96 al~~v-sl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~  174 (254)
                      .|+.+ .+.+++|++++|+||||||||||++.|++.... .|+.|-       .  -|.++.+++....    . .+.+.
T Consensus       119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~-~~~~Gg-------~--~G~vi~i~~e~~~----~-~~~i~  183 (349)
T 1pzn_A          119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQL-PPEEGG-------L--NGSVIWIDTENTF----R-PERIR  183 (349)
T ss_dssp             HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTS-CGGGTS-------C--SCEEEEEESSSCC----C-HHHHH
T ss_pred             HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcc-chhcCC-------C--CCeEEEEeCCCCC----C-HHHHH
Confidence            34554 688999999999999999999999999999730 033320       0  1233455554321    1 12233


Q ss_pred             HHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhc-------CCCcEEEEeCCCCCCCHH
Q 025366          175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVG-------LQHKVVIVDGNYLFLDGG  242 (254)
Q Consensus       175 ~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~-------~~p~vlIlDEp~~~lD~~  242 (254)
                      +.....++.    .   .++++++.+...    ..+.++.+++.++.+++       .+|++||+|||++++|+.
T Consensus       184 ~i~q~~~~~----~---~~v~~ni~~~~~----~~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~  247 (349)
T 1pzn_A          184 EIAQNRGLD----P---DEVLKHIYVARA----FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSE  247 (349)
T ss_dssp             HHHHTTTCC----H---HHHGGGEEEEEC----CSHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHH
T ss_pred             HHHHHcCCC----H---HHHhhCEEEEec----CChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhh
Confidence            333333321    1   155666554321    12578889999988887       689999999999999985

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=99.32  E-value=4.7e-13  Score=117.64  Aligned_cols=32  Identities=25%  Similarity=0.264  Sum_probs=29.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      +|++++|+||||||||||+++|+|+++   |+.|+
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~---~~~g~  132 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQ---NLGKK  132 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHH---hcCCE
Confidence            699999999999999999999999997   66665

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=99.31  E-value=7.3e-14  Score=127.82  Aligned_cols=142  Identities=11%  Similarity=0.043  Sum_probs=86.0

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC---CCeE
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP---PDVA  152 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~---~~~g  152 (254)
                      .++++++.+.|+...    +|+++ +. .+|++++|+||||||||||+++|+|+++   |+.|. .+.++...   +...
T Consensus       143 ~~~l~~Lg~~~~~~~----~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~---~~~g~I~~~ed~ie~~~~~~~  213 (418)
T 1p9r_A          143 RLDLHSLGMTAHNHD----NFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELN---SSERNILTVEDPIEFDIDGIG  213 (418)
T ss_dssp             CCCGGGSCCCHHHHH----HHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHC---CTTSCEEEEESSCCSCCSSSE
T ss_pred             CCCHHHcCCCHHHHH----HHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcC---CCCCEEEEecccchhccCCcc
Confidence            467788888887633    56887 53 7899999999999999999999999997   88888 44443221   1111


Q ss_pred             EEeeCC---CCCC---------CCcC----------CChhhcHHHHHHHcCC-----CCCccHHHHHHHHHhhccCCCCC
Q 025366          153 TVLPMD---GFHL---------YLSQ----------LDAMEDPKEAHARRGA-----PWTFNPLLLLNCLKNLRNQGSVY  205 (254)
Q Consensus       153 ~~i~~~---~~~~---------~~~~----------l~~~e~~~~~~~~~g~-----~~~~~~~~~~~~l~~l~l~~~~~  205 (254)
                      . +.+.   ++.+         ..++          .++.+.+...  ..|.     ....+.....+.+..+++.....
T Consensus       214 q-~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~--~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~~  290 (418)
T 1p9r_A          214 Q-TQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQAS--LTGHLVMSTLHTNTAVGAVTRLRDMGIEPFLI  290 (418)
T ss_dssp             E-EECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHH--HTTCEEEEEECCSSSHHHHHHHHHHTCCHHHH
T ss_pred             e-EEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHH--HhCCCcccccchhhHHHHHHHHHHcCCcHHHH
Confidence            1 1110   1100         1111          1222222221  1221     01112233444566666654445


Q ss_pred             CCCCChhhhhhHhhhhhhcCCCcEEEE
Q 025366          206 APSFDHGVGDPVEDDILVGLQHKVVIV  232 (254)
Q Consensus       206 ~~~lS~G~~qrv~ia~al~~~p~vlIl  232 (254)
                      +..||+||+||  ++++++.+|+++.-
T Consensus       291 ~~~LSgg~~QR--LaraL~~~p~~~~~  315 (418)
T 1p9r_A          291 SSSLLGVLAQR--LVRTLCPDCKEPYE  315 (418)
T ss_dssp             HHHEEEEEEEE--EEEEECTTTCEEEE
T ss_pred             HHHHHHHHHHH--hhhhhcCCCCccCC
Confidence            56899999999  89999999998763

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=99.28  E-value=1.9e-14  Score=122.30  Aligned_cols=133  Identities=12%  Similarity=0.003  Sum_probs=73.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHH---HhhcccCCCCce-ecCCCCCCCCeEEE---eeCCCCCCCCcCCChhhcHHHHHH
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKAS-SFDSQVKPPDVATV---LPMDGFHLYLSQLDAMEDPKEAHA  178 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~---Gll~~~~p~~G~-~~~~~~~~~~~g~~---i~~~~~~~~~~~l~~~e~~~~~~~  178 (254)
                      ++++++|+||||||||||+++|+   |+..   ++.|+ .+.+.......+..   +.+.+...+  ..++.+++.....
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~---~~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~v~~~l~~~l~  100 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQH---LSSGHFLRENIKASTEVGEMAKQYIEKSLLVP--DHVITRLMMSELE  100 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHCCCC---EEHHHHHHHHHHTTCHHHHHHHHHHHTTCCCC--HHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHhCCeE---ecHHHHHHHHHhcCChHHHHHHHHHHcCCCCC--HHHHHHHHHHHHH
Confidence            47999999999999999999999   8765   77777 33321100111110   111222111  1233343333221


Q ss_pred             H--------cCCCCCccHHHHHHHHHhhccC----------------CCCCCCCCChhhhhhHhhhhhh-cCCCcEEEEe
Q 025366          179 R--------RGAPWTFNPLLLLNCLKNLRNQ----------------GSVYAPSFDHGVGDPVEDDILV-GLQHKVVIVD  233 (254)
Q Consensus       179 ~--------~g~~~~~~~~~~~~~l~~l~l~----------------~~~~~~~lS~G~~qrv~ia~al-~~~p~vlIlD  233 (254)
                      .        .+++..  ......+......+                ....+..+||    |+   +++ +.+|+++++|
T Consensus       101 ~~~~~~~il~g~~~~--~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD  171 (246)
T 2bbw_A          101 NRRGQHWLLDGFPRT--LGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGID  171 (246)
T ss_dssp             TCTTSCEEEESCCCS--HHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBC
T ss_pred             hcCCCeEEEECCCCC--HHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCcccccc
Confidence            1        122221  11111111101110                1344556777    44   566 8999999999


Q ss_pred             ----CCCCCCCHHHHHHHHHHhh
Q 025366          234 ----GNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       234 ----Ep~~~lD~~~~~~l~~ll~  252 (254)
                          ||++++|+...+.+.+.+.
T Consensus       172 ~~~~EP~~~ld~~~~~~i~~~l~  194 (246)
T 2bbw_A          172 DVTGEPLVQQEDDKPEAVAARLR  194 (246)
T ss_dssp             TTTCCBCBCCGGGSHHHHHHHHH
T ss_pred             cccccccccCCCCcHHHHHHHHH
Confidence                9999999988888777664

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=99.27  E-value=7.4e-13  Score=119.00  Aligned_cols=133  Identities=11%  Similarity=0.048  Sum_probs=74.9

Q ss_pred             ccceeeeeCC--CeEEEEECCCCCcHHHHHHHHHHhhcccCCCC----ce-ecCCCCCCCCeEEEeeCCCCCCCCcCCCh
Q 025366           97 TSALASNVNV--KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK----AS-SFDSQVKPPDVATVLPMDGFHLYLSQLDA  169 (254)
Q Consensus        97 l~~vsl~i~~--GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~----G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~  169 (254)
                      ...|+++|.+  |+.++|+||||||||||+++|+|++.   |+.    |+ .+.++           .++..........
T Consensus       158 ~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~---~~~~~e~G~i~i~~~-----------~~~~~~~~~~~~~  223 (365)
T 1lw7_A          158 WKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN---TTSAWEYGREFVFEK-----------LGGDEQAMQYSDY  223 (365)
T ss_dssp             GGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT---CEEECCTTHHHHHHS-----------SSSCTTSSCTTTH
T ss_pred             hhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC---CCcchhhHHHHHHhh-----------cCCCcccCChhHH
Confidence            3679999999  99999999999999999999999996   666    44 21110           0111110000011


Q ss_pred             hhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCC----CCCCCCChhhhhhHhhhhhh-cCCCcEEEEeC---CC-----
Q 025366          170 MEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGS----VYAPSFDHGVGDPVEDDILV-GLQHKVVIVDG---NY-----  236 (254)
Q Consensus       170 ~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~----~~~~~lS~G~~qrv~ia~al-~~~p~vlIlDE---p~-----  236 (254)
                       .++.+..      +.. .....++.+++.+...    ..+..+++|++++..++.++ ..+|+++++||   |+     
T Consensus       224 -~~I~~~~------q~~-~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~  295 (365)
T 1lw7_A          224 -PQMALGH------QRY-IDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGL  295 (365)
T ss_dssp             -HHHHHHH------HHH-HHHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC------
T ss_pred             -HHHHHHH------HHH-HHHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCC
Confidence             1111111      000 0111223333322110    01123456677777777765 46899999999   65     


Q ss_pred             -CCCCHHHHHHHHHHh
Q 025366          237 -LFLDGGVWKDVSSMF  251 (254)
Q Consensus       237 -~~lD~~~~~~l~~ll  251 (254)
                       +++|+..+..+.+++
T Consensus       296 ~~sld~~~r~~l~~~l  311 (365)
T 1lw7_A          296 RSLGSQKQRQQFQQLL  311 (365)
T ss_dssp             -----CCSHHHHHHHH
T ss_pred             cCCccHHHHHHHHHHH
Confidence             588999888888877

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=99.22  E-value=3.4e-11  Score=99.45  Aligned_cols=110  Identities=16%  Similarity=0.120  Sum_probs=67.2

Q ss_pred             cccceee-eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHH
Q 025366           96 PTSALAS-NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (254)
Q Consensus        96 al~~vsl-~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~  174 (254)
                      .|+.+.. .+++|++++|+||||||||||++.|++ ..                .....++..+..      .+. +...
T Consensus         8 ~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~-~~----------------~~~v~~i~~~~~------~~~-~~~~   63 (220)
T 2cvh_A            8 SLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL-LS----------------GKKVAYVDTEGG------FSP-ERLV   63 (220)
T ss_dssp             HHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH-HH----------------CSEEEEEESSCC------CCH-HHHH
T ss_pred             HHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH-Hc----------------CCcEEEEECCCC------CCH-HHHH
Confidence            4566654 689999999999999999999999999 31                112222333221      121 1122


Q ss_pred             HHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhh--hhhHhhhhhhcCC-CcEEEEeCCCCCCCHH
Q 025366          175 EAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGV--GDPVEDDILVGLQ-HKVVIVDGNYLFLDGG  242 (254)
Q Consensus       175 ~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~--~qrv~ia~al~~~-p~vlIlDEp~~~lD~~  242 (254)
                      ......+.    +.   .++++++..      ...+.++  +++++.+++++.+ |++||+|||++++|..
T Consensus        64 ~~~~~~~~----~~---~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~  121 (220)
T 2cvh_A           64 QMAETRGL----NP---EEALSRFIL------FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE  121 (220)
T ss_dssp             HHHHTTTC----CH---HHHHHHEEE------ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGG
T ss_pred             HHHHhcCC----Ch---HHHhhcEEE------EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhc
Confidence            22222222    11   123344322      2334443  5677777888775 9999999999999863

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=99.21  E-value=7.7e-13  Score=106.86  Aligned_cols=105  Identities=13%  Similarity=0.059  Sum_probs=57.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC----C-
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----A-  182 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g----~-  182 (254)
                      ++++|+|+||||||||+++|+|++.   |+ |         ...|. |..++..+..  ++....-.......+    + 
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~---~~-g---------~~~G~-I~~dg~~i~~--~~~~~~d~~r~~~ig~~~~~~   66 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILR---ER-G---------LRVAV-VKRHAHGDFE--IDKEGKDSWKIYNSGADVVIA   66 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHH---HT-T---------CCEEE-EEC--------------CHHHHHHHHTCEEEEE
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhh---hc-C---------CceEE-EEEcCccccc--CCccchhHHHHHhcCCceEEE
Confidence            5899999999999999999999995   33 0         01454 5555543221  110000011111233    1 


Q ss_pred             CCCc-------cHH---HHHHHHHh-hccCCCCC-CCCCChhhhhhHhhhhhhcCCCcE
Q 025366          183 PWTF-------NPL---LLLNCLKN-LRNQGSVY-APSFDHGVGDPVEDDILVGLQHKV  229 (254)
Q Consensus       183 ~~~~-------~~~---~~~~~l~~-l~l~~~~~-~~~lS~G~~qrv~ia~al~~~p~v  229 (254)
                      ++..       +.+   .+.++++. +. +.+.. ...||+||+||+++||+++.+|++
T Consensus        67 ~~~~~~~i~~~~~~~~a~l~~~i~~~l~-g~dt~i~EglSgGq~qri~lARall~~p~i  124 (171)
T 2f1r_A           67 SPVKLAFIRRVSEEEGNDLDWIYERYLS-DYDLVITEGFSKAGKDRIVVVKKPEEVEHF  124 (171)
T ss_dssp             CSSEEEEEEECCHHHHTCHHHHHHHHTT-TCSEEEEESCGGGCCCEEEECSSGGGGGGG
T ss_pred             CCCcEEEEecCChhhhhCHHHHHHhhCC-CCCEEEECCcCCCCCcEEEEEecccCCCcc
Confidence            2110       011   23445554 43 32221 124999999999999999988876

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=99.21  E-value=2.2e-11  Score=98.22  Aligned_cols=32  Identities=28%  Similarity=0.428  Sum_probs=29.2

Q ss_pred             eeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +|.+.+|+.++|.||||+|||||+++|++.+.
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~   63 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY   63 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46677899999999999999999999999984

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.20  E-value=1.5e-12  Score=119.00  Aligned_cols=158  Identities=11%  Similarity=0.038  Sum_probs=83.1

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeE--EEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCC--CCCCCC
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS--QVKPPD  150 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~Gei--vgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~--~~~~~~  150 (254)
                      ..+++.+ ++.|++.  .   ++++||++++|++  ++|+||||||||||+++|+|+.-     .|. ....  ......
T Consensus        15 ~~l~~~~-~~~y~~~--~---L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l-----~g~~~~~~~~~~~~~~   83 (427)
T 2qag_B           15 RTVPLAG-HVGFDSL--P---DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKF-----EGEPATHTQPGVQLQS   83 (427)
T ss_dssp             --CCCCC-CC-CC----C---HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC------------CCSSCEEEE
T ss_pred             ceEEEee-EEEECCe--e---cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccc-----cCCcCCCCCccceEee
Confidence            3466777 8899762  2   5999999999999  99999999999999999999851     121 1000  000011


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC----------ccHHHHHHHHHhh-ccC------CCCCC-------
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT----------FNPLLLLNCLKNL-RNQ------GSVYA-------  206 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~----------~~~~~~~~~l~~l-~l~------~~~~~-------  206 (254)
                      .+. +.++....  ..+++.+++.+     +....          +....+...++.. +..      .+..+       
T Consensus        84 i~~-v~Q~~~l~--~~ltv~D~~~~-----g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI  155 (427)
T 2qag_B           84 NTY-DLQESNVR--LKLTIVSTVGF-----GDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFI  155 (427)
T ss_dssp             EEE-EEEC--CE--EEEEEEEEECC-----CC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEE
T ss_pred             EEE-EeecCccc--cccchhhhhhh-----hhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEE
Confidence            233 33322111  11444444322     11000          0012223333332 221      11111       


Q ss_pred             CCCChhhhh-hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          207 PSFDHGVGD-PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       207 ~~lS~G~~q-rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ...++|... -+.++++|..+..||++|+++..|.+.....+.+.+.
T Consensus       156 ~d~~~~l~~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~  202 (427)
T 2qag_B          156 APTGHSLKSLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKIT  202 (427)
T ss_dssp             CCCC---CHHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHH
T ss_pred             eCCCCCCCHHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHH
Confidence            111222221 1678888988999999999999999877777666554

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=99.18  E-value=4.6e-12  Score=102.77  Aligned_cols=130  Identities=18%  Similarity=0.067  Sum_probs=68.4

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--CCCeEEEeeCCCCCCCC--cCCChhhcHHHHH
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--PPDVATVLPMDGFHLYL--SQLDAMEDPKEAH  177 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--~~~~g~~i~~~~~~~~~--~~l~~~e~~~~~~  177 (254)
                      .+++|++++|+||||||||||+++|+|.     ++.|. .++++..  ....+.   ..++....  ...++.+++....
T Consensus         5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~-----~~~g~i~i~~d~~~~~~~~~~---~~~~~~~~~~~~~~v~~~l~~~~   76 (191)
T 1zp6_A            5 DDLGGNILLLSGHPGSGKSTIAEALANL-----PGVPKVHFHSDDLWGYIKHGR---IDPWLPQSHQQNRMIMQIAADVA   76 (191)
T ss_dssp             -CCTTEEEEEEECTTSCHHHHHHHHHTC-----SSSCEEEECTTHHHHTCCSSC---CCTTSSSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHhc-----cCCCeEEEcccchhhhhhccc---ccCCccchhhhhHHHHHHHHHHH
Confidence            4778999999999999999999999996     44554 3333211  000000   00110000  0012222222211


Q ss_pred             HH---cCC---CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHh
Q 025366          178 AR---RGA---PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       178 ~~---~g~---~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll  251 (254)
                      ..   .+.   .+..........+..    ....+..+|+|++|++.++|++..+|+++        +|+...+.+.+.+
T Consensus        77 ~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~  144 (191)
T 1zp6_A           77 GRYAKEGYFVILDGVVRPDWLPAFTA----LARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQF  144 (191)
T ss_dssp             HHHHHTSCEEEECSCCCTTTTHHHHT----TCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHT
T ss_pred             HHHhccCCeEEEeccCcHHHHHHHHh----cCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHH
Confidence            10   010   000000000000110    02234578999999999999999888765        5887777777766


Q ss_pred             h
Q 025366          252 D  252 (254)
Q Consensus       252 ~  252 (254)
                      +
T Consensus       145 ~  145 (191)
T 1zp6_A          145 A  145 (191)
T ss_dssp             T
T ss_pred             h
Confidence            4

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=99.17  E-value=2.4e-11  Score=106.30  Aligned_cols=130  Identities=12%  Similarity=0.019  Sum_probs=79.8

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPM  157 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~  157 (254)
                      +.++++++.|+...      ++++|+  +|++++|+|+||+||||++..|++++.   +..|           ...++..
T Consensus        77 ~~~~~l~~~~~~~~------~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~---~~~~-----------~v~l~~~  134 (295)
T 1ls1_A           77 TVYEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK---GKGR-----------RPLLVAA  134 (295)
T ss_dssp             HHHHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHH---HTTC-----------CEEEEEC
T ss_pred             HHHHHHHHHHCCCC------ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHH---HcCC-----------eEEEecC
Confidence            45677888886521      678888  899999999999999999999999985   2222           1111222


Q ss_pred             CCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCC-C
Q 025366          158 DGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGN-Y  236 (254)
Q Consensus       158 ~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp-~  236 (254)
                         +...   +...                 ..+..+.+..++.........+-.+-+|.+++.+...++|++|+|+| +
T Consensus       135 ---d~~~---~~~~-----------------~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~  191 (295)
T 1ls1_A          135 ---DTQR---PAAR-----------------EQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGR  191 (295)
T ss_dssp             ---CSSC---HHHH-----------------HHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCC
T ss_pred             ---Cccc---HhHH-----------------HHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCC
Confidence               2211   1000                 00011222223221100011223344577777776689999999998 9


Q ss_pred             CCCCHHHHHHHHHHhh
Q 025366          237 LFLDGGVWKDVSSMFD  252 (254)
Q Consensus       237 ~~lD~~~~~~l~~ll~  252 (254)
                      .++|.....++.++.+
T Consensus       192 ~~~d~~~~~~l~~~~~  207 (295)
T 1ls1_A          192 LQIDEPLMGELARLKE  207 (295)
T ss_dssp             SSCCHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHhh
Confidence            9999987777766543

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=99.17  E-value=1.6e-11  Score=110.24  Aligned_cols=59  Identities=24%  Similarity=0.339  Sum_probs=46.3

Q ss_pred             EEecceee---cccccceec-------cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366           79 EARCMDEV---YDALAQRLL-------PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus        79 ~i~~l~~~---y~~~~~~vl-------al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      +++++++.   |+.....++       ++++++|.+++|++++|+||||||||||+++|+|+++   |+.|.
T Consensus       137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~---~~~g~  205 (361)
T 2gza_A          137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIP---FDQRL  205 (361)
T ss_dssp             TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSC---TTSCE
T ss_pred             CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCC---CCceE
Confidence            56677777   753212222       3499999999999999999999999999999999996   55554

>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*

Probab=99.17  E-value=1.5e-11  Score=96.87  Aligned_cols=51  Identities=10%  Similarity=0.121  Sum_probs=45.9

Q ss_pred             CCCCCCCChhhhhhHhhh------hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          203 SVYAPSFDHGVGDPVEDD------ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       203 ~~~~~~lS~G~~qrv~ia------~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +.++..|||||+||+++|      ++++.+|+++|+||||++||+..+..+.+++.+
T Consensus        52 ~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~  108 (148)
T 1f2t_B           52 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMER  108 (148)
T ss_dssp             EECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHH
T ss_pred             cCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHH
Confidence            456789999999999876      789999999999999999999999999988753

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=99.14  E-value=4.1e-11  Score=111.17  Aligned_cols=46  Identities=28%  Similarity=0.309  Sum_probs=42.5

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCC
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQ  145 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~  145 (254)
                      +++++||++++ ++++|+||||||||||+++|+|+++   |++|+ .++|.
T Consensus        19 ~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~I~~~g~   65 (483)
T 3euj_A           19 GFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI---PDLTLLNFRNT   65 (483)
T ss_dssp             TEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHC---CCTTTCCCCCT
T ss_pred             cccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC---CCCCEEEECCE
Confidence            77999999999 9999999999999999999999997   99999 56653

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=99.14  E-value=5.6e-11  Score=107.15  Aligned_cols=34  Identities=32%  Similarity=0.467  Sum_probs=30.4

Q ss_pred             ccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++++  +++|++++|+||||||||||+++|+|+++
T Consensus       128 l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~  161 (372)
T 2ewv_A          128 VLELC--HRKMGLILVTGPTGSGKSTTIASMIDYIN  161 (372)
T ss_dssp             HHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             HHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence            45554  78999999999999999999999999995

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=99.12  E-value=5.3e-11  Score=99.73  Aligned_cols=31  Identities=23%  Similarity=0.397  Sum_probs=26.1

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -..++|++++|+||||||||||+++|+|+++
T Consensus        11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~   41 (219)
T 1s96_A           11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQP   41 (219)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             ccCCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence            4578999999999999999999999999984

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=99.11  E-value=1.1e-10  Score=91.99  Aligned_cols=27  Identities=30%  Similarity=0.288  Sum_probs=25.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +|+.++|+||||+|||||+++|++.+.
T Consensus        35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~   61 (149)
T 2kjq_A           35 HGQFIYVWGEEGAGKSHLLQAWVAQAL   61 (149)
T ss_dssp             CCSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            799999999999999999999999984

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=99.06  E-value=1.5e-10  Score=101.71  Aligned_cols=99  Identities=15%  Similarity=0.099  Sum_probs=65.9

Q ss_pred             ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHH
Q 025366           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA  178 (254)
Q Consensus        99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~  178 (254)
                      .+++...+|++++|+|+|||||||+++.|++.+.   +..|           ...++..|.+   +.  ..         
T Consensus        96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~---~~g~-----------kV~lv~~D~~---r~--~a---------  147 (306)
T 1vma_A           96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFV---DEGK-----------SVVLAAADTF---RA--AA---------  147 (306)
T ss_dssp             CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTC-----------CEEEEEECTT---CH--HH---------
T ss_pred             CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHH---hcCC-----------EEEEEccccc---cH--HH---------
Confidence            3566678899999999999999999999999995   3222           1122222221   10  00         


Q ss_pred             HcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhH---hhhhhhcCCCcEEEEeCCCC
Q 025366          179 RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPV---EDDILVGLQHKVVIVDGNYL  237 (254)
Q Consensus       179 ~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv---~ia~al~~~p~vlIlDEp~~  237 (254)
                               .+.+..+.+.+++..   ++..|+|+.+++   ++++++..+++++|+|+|..
T Consensus       148 ---------~eqL~~~~~~~gl~~---~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~  197 (306)
T 1vma_A          148 ---------IEQLKIWGERVGATV---ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR  197 (306)
T ss_dssp             ---------HHHHHHHHHHHTCEE---ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred             ---------HHHHHHHHHHcCCcE---EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence                     011222333333321   346688999998   78888999999999999875

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=99.06  E-value=1.6e-11  Score=109.99  Aligned_cols=112  Identities=16%  Similarity=0.058  Sum_probs=63.4

Q ss_pred             ccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecC-CCC----CCCCeEEEeeCCCCCCCCcCCChh
Q 025366           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFD-SQV----KPPDVATVLPMDGFHLYLSQLDAM  170 (254)
Q Consensus        97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~-~~~----~~~~~g~~i~~~~~~~~~~~l~~~  170 (254)
                      ++++++.+ +|++++|+||||||||||+++|+|+...  |..|+ ... |..    .....+. +.+++..+..  .++.
T Consensus       206 l~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~--~~~G~I~~~~G~g~~tt~~~~i~~-v~q~~~l~dt--pgv~  279 (358)
T 2rcn_A          206 LKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNE--ILTNDVSNVSGLGQHTTTAARLYH-FPHGGDVIDS--PGVR  279 (358)
T ss_dssp             HHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSC--CCCC-------------CCCEEEE-CTTSCEEEEC--HHHH
T ss_pred             HHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccc--cccCCccccCCCCccceEEEEEEE-ECCCCEecCc--ccHH
Confidence            35566654 6999999999999999999999998731  67787 332 311    1112222 3333322111  1111


Q ss_pred             hcHHHHHHHcCCCCCccH----HHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhc
Q 025366          171 EDPKEAHARRGAPWTFNP----LLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVG  224 (254)
Q Consensus       171 e~~~~~~~~~g~~~~~~~----~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~  224 (254)
                      +        +++. ....    ..+.++++.+++.  .+..+..+| |++||+++|.+++
T Consensus       280 e--------~~l~-~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli  329 (358)
T 2rcn_A          280 E--------FGLW-HLEPEQITQGFVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI  329 (358)
T ss_dssp             T--------CCCC-CCCHHHHHHTSGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred             H--------hhhc-CCCHHHHHHHHHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence            1        2221 1111    2234455555554  456777899 9999999998764

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.05  E-value=6.9e-13  Score=121.23  Aligned_cols=126  Identities=20%  Similarity=0.155  Sum_probs=74.7

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCC-CCCCCcCCChhhcHHH-
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDG-FHLYLSQLDAMEDPKE-  175 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~-~~~~~~~l~~~e~~~~-  175 (254)
                      ++++|+++.+++++|+|+||||||||+++|++..    |..+.. ......+..|. +.+++ ..+     .+.+.+-. 
T Consensus       148 ~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~----~~i~~~-~ftTl~p~~G~-V~~~~~~~~-----~l~DtpGli  216 (416)
T 1udx_A          148 RRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH----PKIAPY-PFTTLSPNLGV-VEVSEEERF-----TLADIPGII  216 (416)
T ss_dssp             EEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC----CEECCC-TTCSSCCEEEE-EECSSSCEE-----EEEECCCCC
T ss_pred             eeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC----ccccCc-ccceecceeeE-EEecCcceE-----EEEeccccc
Confidence            5899999999999999999999999999999985    211110 00011344454 44443 111     11111000 


Q ss_pred             --HHHHcCCCCCccHHHHHHHHHh-------hccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHH
Q 025366          176 --AHARRGAPWTFNPLLLLNCLKN-------LRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVW  244 (254)
Q Consensus       176 --~~~~~g~~~~~~~~~~~~~l~~-------l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~  244 (254)
                        .....++.     ..+...++.       +.+. ...+.+||+|++|++.++++++..|.+|++    +.+|....
T Consensus       217 ~~a~~~~~L~-----~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~  284 (416)
T 1udx_A          217 EGASEGKGLG-----LEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEE  284 (416)
T ss_dssp             CCGGGSCCSC-----HHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCH
T ss_pred             cchhhhhhhh-----HHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhH
Confidence              00000110     111111111       1222 334457899999999999999999999999    88887654

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=99.04  E-value=5.8e-12  Score=111.76  Aligned_cols=116  Identities=13%  Similarity=0.096  Sum_probs=64.2

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~  182 (254)
                      ..++|++++|+||||||||||++.|+|+++   |+.|+              +.+.+.+.++  ....+.........++
T Consensus       125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~---~~~g~--------------V~l~g~D~~r--~~a~eql~~~~~~~gv  185 (328)
T 3e70_C          125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLK---NHGFS--------------VVIAASDTFR--AGAIEQLEEHAKRIGV  185 (328)
T ss_dssp             SSCSSEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC--------------EEEEEECCSS--TTHHHHHHHHHHHTTC
T ss_pred             cCCCCeEEEEECCCCCCHHHHHHHHHHHHH---hcCCE--------------EEEEeecccc--cchHHHHHHHHHHcCc
Confidence            447899999999999999999999999996   65553              2222222222  1233333333444452


Q ss_pred             ---CCCccHHHHHHHHHhhccC----CCCC----CC--C-CChhhhhhHhhhhhhcCCCcEEEEeCCCC
Q 025366          183 ---PWTFNPLLLLNCLKNLRNQ----GSVY----AP--S-FDHGVGDPVEDDILVGLQHKVVIVDGNYL  237 (254)
Q Consensus       183 ---~~~~~~~~~~~~l~~l~l~----~~~~----~~--~-lS~G~~qrv~ia~al~~~p~vlIlDEp~~  237 (254)
                         ++.....+...+.+++...    .+..    ..  . -..-+.+-..+++++..++.++++|.++.
T Consensus       186 ~~v~q~~~~~p~~~v~e~l~~~~~~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~  254 (328)
T 3e70_C          186 KVIKHSYGADPAAVAYDAIQHAKARGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG  254 (328)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT
T ss_pred             eEEeccccCCHHHHHHHHHHHHHhccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH
Confidence               2332223333344433221    1100    00  0 11122333447788888888899996665

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=99.04  E-value=4.3e-12  Score=112.68  Aligned_cols=52  Identities=29%  Similarity=0.445  Sum_probs=44.4

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCC-------eEEEEECCCCCcHHHHHHHHHHhh
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVK-------HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~G-------eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+++.+++++.|+...    +++++++.++.|       +.++|.||||+|||||+++|++.+
T Consensus        17 ~~lr~~~l~~~~g~~~----~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           17 QFLRPKSLDEFIGQEN----VKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CTTSCSSGGGCCSCHH----HHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             HHcCCccHHHccCcHH----HHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            3466778888898743    569999998876       899999999999999999999998

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.99  E-value=1.4e-10  Score=107.61  Aligned_cols=40  Identities=23%  Similarity=0.359  Sum_probs=36.2

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      +++||++++|++++|+|+||||||||+++|+|++.   ++.|+
T Consensus       284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~---~~~G~  323 (503)
T 2yhs_A          284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFE---QQGKS  323 (503)
T ss_dssp             CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC
T ss_pred             CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhh---hcCCe
Confidence            68999999999999999999999999999999996   55554

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=98.96  E-value=3e-11  Score=104.47  Aligned_cols=133  Identities=17%  Similarity=0.083  Sum_probs=75.2

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCCh-hhcHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDA-MEDPK  174 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~-~e~~~  174 (254)
                      +++++++.+++|  ++|.||||||||||+++|+|...                +  +. +.+++..+....... ...+.
T Consensus        35 ~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~----------------~--~~-i~i~g~~l~~~~~~~~~~~i~   93 (274)
T 2x8a_A           35 QFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESG----------------L--NF-ISVKGPELLNMYVGESERAVR   93 (274)
T ss_dssp             HHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTT----------------C--EE-EEEETTTTCSSTTHHHHHHHH
T ss_pred             HHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcC----------------C--CE-EEEEcHHHHhhhhhHHHHHHH
Confidence            569999999999  99999999999999999999984                2  22 445554332210000 01111


Q ss_pred             HHHHH--cCCC-----CCccH---HHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC-------
Q 025366          175 EAHAR--RGAP-----WTFNP---LLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-------  237 (254)
Q Consensus       175 ~~~~~--~g~~-----~~~~~---~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~-------  237 (254)
                      .....  ...+     +..+.   .+-....+...-..+..+..|||||+||+.+++++..+|++|  |+++.       
T Consensus        94 ~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~  171 (274)
T 2x8a_A           94 QVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDK  171 (274)
T ss_dssp             HHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCE
T ss_pred             HHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCe
Confidence            11110  0000     00000   000000000000001123468999999999999999999975  88753       


Q ss_pred             -----CCCHHHHHHHHHHh
Q 025366          238 -----FLDGGVWKDVSSMF  251 (254)
Q Consensus       238 -----~lD~~~~~~l~~ll  251 (254)
                           .-|...+.+|++.+
T Consensus       172 ~i~~~~P~~~~r~~il~~~  190 (274)
T 2x8a_A          172 TLFVGLPPPADRLAILKTI  190 (274)
T ss_dssp             EEECCSCCHHHHHHHHHHH
T ss_pred             EEEeCCcCHHHHHHHHHHH
Confidence                 34677777777655

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=98.96  E-value=3.1e-09  Score=88.85  Aligned_cols=111  Identities=13%  Similarity=0.162  Sum_probs=60.8

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHh--hcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR--INKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gl--l~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~  180 (254)
                      .+++|++++|+||||||||||++.|++.  ++   ++.|        ....+. +.+++....    .. +........+
T Consensus        20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~---~~~g--------~~~~~~-~~i~~~~~~----~~-~~~~~~~~~~   82 (243)
T 1n0w_A           20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLP---IDRG--------GGEGKA-MYIDTEGTF----RP-ERLLAVAERY   82 (243)
T ss_dssp             SEETTSEEEEECCTTSSHHHHHHHHHHHTTSC---GGGT--------CCSSEE-EEEESSSCC----CH-HHHHHHHHHT
T ss_pred             CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCc---hhcC--------CCCCeE-EEEECCCCc----CH-HHHHHHHHHc
Confidence            4789999999999999999999999994  32   1111        012233 444443211    11 2222223344


Q ss_pred             CCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhh-Hhhhhhh--cCCCcEEEEeCCCCCCCHH
Q 025366          181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDP-VEDDILV--GLQHKVVIVDGNYLFLDGG  242 (254)
Q Consensus       181 g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qr-v~ia~al--~~~p~vlIlDEp~~~lD~~  242 (254)
                      ++.    .   .++++++.+.     ..++..+... +..+..+  ..+|++||+|||+..+|..
T Consensus        83 g~~----~---~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~  135 (243)
T 1n0w_A           83 GLS----G---SDVLDNVAYA-----RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTD  135 (243)
T ss_dssp             TCC----H---HHHHHTEEEE-----ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC--
T ss_pred             CCC----H---HHHhhCeEEE-----ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHH
Confidence            432    1   1244544332     2344443322 2222222  3589999999999999874

>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*

Probab=98.95  E-value=6.1e-10  Score=89.91  Aligned_cols=51  Identities=14%  Similarity=0.078  Sum_probs=45.0

Q ss_pred             CCCCCCCChhhhhhHhhhhhhc----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          203 SVYAPSFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       203 ~~~~~~lS~G~~qrv~ia~al~----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ...+..||||||||+++|++++    .+|+++|||||+++||+.+...+.+++.+
T Consensus        59 ~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~  113 (173)
T 3kta_B           59 VKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKE  113 (173)
T ss_dssp             CCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             ccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHH
Confidence            3456789999999999999996    45799999999999999999999998853

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.95  E-value=2.8e-10  Score=99.74  Aligned_cols=115  Identities=15%  Similarity=0.008  Sum_probs=69.0

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ec---CCCCCC--------CCeEEEeeCCCCCCCC--cCC
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF---DSQVKP--------PDVATVLPMDGFHLYL--SQL  167 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~---~~~~~~--------~~~g~~i~~~~~~~~~--~~l  167 (254)
                      +++..|++++|+||||||||||+|+|+ ++.   |+.|+ .+   .|....        +..|.++...++....  ..+
T Consensus       160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~---~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~l  235 (302)
T 2yv5_A          160 VDYLEGFICILAGPSGVGKSSILSRLT-GEE---LRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFV  235 (302)
T ss_dssp             HHHTTTCEEEEECSTTSSHHHHHHHHH-SCC---CCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTS
T ss_pred             HhhccCcEEEEECCCCCCHHHHHHHHH-Hhh---CcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccC
Confidence            355679999999999999999999999 886   99999 44   443211        1345533333332111  235


Q ss_pred             ChhhcH--HHH----H--HHcCC-CCCccHHHHHHHHHhhccCC---CCCCCCCChhhhhhHhhhh
Q 025366          168 DAMEDP--KEA----H--ARRGA-PWTFNPLLLLNCLKNLRNQG---SVYAPSFDHGVGDPVEDDI  221 (254)
Q Consensus       168 ~~~e~~--~~~----~--~~~g~-~~~~~~~~~~~~l~~l~l~~---~~~~~~lS~G~~qrv~ia~  221 (254)
                      ++ +++  .+.    .  ...+. ........+.++++.+++..   +.++..||+..++++++|+
T Consensus       236 t~-e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~  300 (302)
T 2yv5_A          236 KP-REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR  300 (302)
T ss_dssp             CG-GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred             CH-HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            55 444  111    0  11221 22233456788899888863   4566788887777777765

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=98.94  E-value=9.5e-10  Score=108.90  Aligned_cols=97  Identities=12%  Similarity=0.026  Sum_probs=70.2

Q ss_pred             eeCCCCCCC-CcCCChhhcHHHHHHHcCCCCCc----------cHHHHHHHHHhhccC---CCCCCCCCChhhhhhHhhh
Q 025366          155 LPMDGFHLY-LSQLDAMEDPKEAHARRGAPWTF----------NPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       155 i~~~~~~~~-~~~l~~~e~~~~~~~~~g~~~~~----------~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia  220 (254)
                      +.+.|..+. ...+++.+++.+. ...+++...          ...+ .+.+..+++.   .+..+.+|||||+||++||
T Consensus       439 v~~~g~~i~q~~~ltV~e~~~f~-e~l~l~~~~~~i~~~~~~ei~~R-l~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA  516 (972)
T 2r6f_A          439 VLVGGKHIGEVTAMSVTEALAFF-DGLELTEKEAQIARLILREIRDR-LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLA  516 (972)
T ss_dssp             EESSSCBHHHHHTSBHHHHHHHH-HHCCCCHHHHHHSHHHHHHHHHH-HHHHHHHTCTTSBSSSBGGGCCHHHHHHHHHH
T ss_pred             eEECCCcHHHHhhCCHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHH-HHHhhhCCCCccccCCccccCCHHHHHHHHHH
Confidence            445554432 1236778888874 455543310          1122 2457777875   4778899999999999999


Q ss_pred             hhhcCC--CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          221 ILVGLQ--HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       221 ~al~~~--p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++|..+  |++|||||||++||+...+.+.++|++
T Consensus       517 ~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~  551 (972)
T 2r6f_A          517 TQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKS  551 (972)
T ss_dssp             HHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred             HHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHH
Confidence            999887  499999999999999999999988753

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=98.94  E-value=1.2e-10  Score=99.58  Aligned_cols=53  Identities=19%  Similarity=0.289  Sum_probs=35.6

Q ss_pred             ceEEEecc-eeec-ccccceeccccceeeeeCC---CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           76 PVVEARCM-DEVY-DALAQRLLPTSALASNVNV---KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        76 ~~l~i~~l-~~~y-~~~~~~vlal~~vsl~i~~---GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++++++|| ++.| +...    +|+++||++.+   |++++|+|++||||||++++|++.+.
T Consensus        16 ~~l~~~~~~~~~~~~~~~----~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg   73 (250)
T 3nwj_A           16 ALLETGSLLHSPFDEEQQ----ILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG   73 (250)
T ss_dssp             ----------------CH----HHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CceEEcceeeEEecCcch----hhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            57999999 9999 4422    67999999999   99999999999999999999999774

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.93  E-value=3.3e-10  Score=94.99  Aligned_cols=35  Identities=26%  Similarity=0.384  Sum_probs=22.9

Q ss_pred             ccceeeeeCCCeEEEEECCCCCcHHHHHHHHH-Hhh
Q 025366           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRI  131 (254)
Q Consensus        97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~-Gll  131 (254)
                      ..++||++++|++++|+||||||||||+++|+ |++
T Consensus        17 ~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           17 QGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             -----CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            38999999999999999999999999999999 997

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=98.92  E-value=1.1e-09  Score=108.58  Aligned_cols=63  Identities=13%  Similarity=0.092  Sum_probs=54.7

Q ss_pred             HHHHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCCc--EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          191 LLNCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQHK--VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       191 ~~~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p~--vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ..+.+..+++.   .+..+.+|||||+||++||++|+.+|+  +|||||||++||+...+.+.++|++
T Consensus       444 ~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~  511 (916)
T 3pih_A          444 RLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKK  511 (916)
T ss_dssp             HHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHH
T ss_pred             HHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHH
Confidence            34566677775   467888999999999999999998777  9999999999999999999998864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.84  E-value=1.5e-09  Score=88.73  Aligned_cols=31  Identities=26%  Similarity=0.564  Sum_probs=26.3

Q ss_pred             eeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |+++.+|++++|+||||||||||+++|+|++
T Consensus         1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~   31 (205)
T 3tr0_A            1 SNAMNKANLFIISAPSGAGKTSLVRALVKAL   31 (205)
T ss_dssp             ----CCCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCcCCCCcEEEEECcCCCCHHHHHHHHHhhC
Confidence            4677899999999999999999999999997

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=98.82  E-value=2.5e-09  Score=102.04  Aligned_cols=158  Identities=17%  Similarity=0.198  Sum_probs=89.7

Q ss_pred             EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCC-ce-ecCCCCC---CCCeEEE
Q 025366           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQK-AS-SFDSQVK---PPDVATV  154 (254)
Q Consensus        80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~-G~-~~~~~~~---~~~~g~~  154 (254)
                      -+++...|+...    +++++++.+..|+.++|+||||+|||||+++|++++.   +.. |. .+.++..   .+..+. 
T Consensus        37 p~~l~~i~G~~~----~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~---~~~~~~~~~~~~~~~~~~p~i~~-  108 (604)
T 3k1j_A           37 EKLIDQVIGQEH----AVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLP---TETLEDILVFPNPEDENMPRIKT-  108 (604)
T ss_dssp             SSHHHHCCSCHH----HHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSC---CSSCEEEEEECCTTCTTSCEEEE-
T ss_pred             ccccceEECchh----hHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCC---cccCCeEEEeCCcccccCCcEEE-
Confidence            346667777643    6699999999999999999999999999999999985   433 22 2222111   111111 


Q ss_pred             eeCCCCCCCCcCCChhhcHHHHHHH-cC-----------------------C-CCCc---cHHHHHHHHHhhccCCCCCC
Q 025366          155 LPMDGFHLYLSQLDAMEDPKEAHAR-RG-----------------------A-PWTF---NPLLLLNCLKNLRNQGSVYA  206 (254)
Q Consensus       155 i~~~~~~~~~~~l~~~e~~~~~~~~-~g-----------------------~-~~~~---~~~~~~~~l~~l~l~~~~~~  206 (254)
                      ++....      ....+........ ..                       . ....   .......++..+.. .....
T Consensus       109 ~p~g~~------~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~-~~~~~  181 (604)
T 3k1j_A          109 VPACQG------RRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRH-DPFQS  181 (604)
T ss_dssp             EETTHH------HHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECC-CCC--
T ss_pred             EecchH------HHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEe-chhhc
Confidence            111000      0000000000000 00                       0 0000   00001111111111 11222


Q ss_pred             CCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          207 PSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       207 ~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ..+++|++|++..+.....++.+|++||... |++..|..+.+++++
T Consensus       182 g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~  227 (604)
T 3k1j_A          182 GGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE  227 (604)
T ss_dssp             --CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred             CCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence            5688899999988888888999999999888 689999999998864

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=98.79  E-value=6.8e-09  Score=90.69  Aligned_cols=28  Identities=29%  Similarity=0.271  Sum_probs=26.2

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+|++++|+|+||+||||++..|++.+.
T Consensus       103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~  130 (296)
T 2px0_A          103 IHSKYIVLFGSTGAGKTTTLAKLAAISM  130 (296)
T ss_dssp             CCSSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4699999999999999999999999985

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=98.78  E-value=1.1e-08  Score=90.53  Aligned_cols=30  Identities=13%  Similarity=0.191  Sum_probs=25.0

Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +..+++|+|+|||+. ||+..+..+.+++++
T Consensus       131 l~~~~~vlilDE~~~-L~~~~~~~L~~~le~  160 (354)
T 1sxj_E          131 LAHRYKCVIINEANS-LTKDAQAALRRTMEK  160 (354)
T ss_dssp             ---CCEEEEEECTTS-SCHHHHHHHHHHHHH
T ss_pred             cCCCCeEEEEeCccc-cCHHHHHHHHHHHHh
Confidence            567899999999999 999999999998864

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=98.76  E-value=7.9e-09  Score=101.65  Aligned_cols=60  Identities=13%  Similarity=0.014  Sum_probs=52.7

Q ss_pred             HHHHhhccC---CCCCCCCCChhhhhhHhhhhhhcCCC--cEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          193 NCLKNLRNQ---GSVYAPSFDHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       193 ~~l~~l~l~---~~~~~~~lS~G~~qrv~ia~al~~~p--~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +.+..+++.   .+..+..|||||+||++||++|+.+|  +++||||||++||+...+.+.++++
T Consensus       361 ~~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~  425 (842)
T 2vf7_A          361 DVLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALE  425 (842)
T ss_dssp             HHHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHH
T ss_pred             HHHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHH
Confidence            356667765   46788899999999999999999998  4999999999999999999999875

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=98.75  E-value=1.3e-08  Score=92.47  Aligned_cols=111  Identities=15%  Similarity=0.137  Sum_probs=60.6

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHH--HhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVV--RRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~--Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~  180 (254)
                      -+++|++++|+||||||||||++.|+  ++++   ++.|        ... +.++.+++....    . .+.+......+
T Consensus       174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p---~~~G--------g~~-~~viyid~E~~~----~-~~rl~~~a~~~  236 (400)
T 3lda_A          174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIP---LDIG--------GGE-GKCLYIDTEGTF----R-PVRLVSIAQRF  236 (400)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHTTSC---GGGT--------CCS-SEEEEEESSSCC----C-HHHHHHHHHHT
T ss_pred             CcCCCcEEEEEcCCCCChHHHHHHHHHHhccC---cccC--------CCC-CcEEEEeCCCcc----C-HHHHHHHHHHc
Confidence            58899999999999999999999654  4442   2222        011 122445543211    1 12223334455


Q ss_pred             CCCCCccHHHHHHHHHhhccCCCCCCCCCCh-hhhhhHhhhhhh--cCCCcEEEEeCCCCCCCHH
Q 025366          181 GAPWTFNPLLLLNCLKNLRNQGSVYAPSFDH-GVGDPVEDDILV--GLQHKVVIVDGNYLFLDGG  242 (254)
Q Consensus       181 g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~-G~~qrv~ia~al--~~~p~vlIlDEp~~~lD~~  242 (254)
                      ++.       ..++++++.+..     .++. .+.+.+..+..+  ..+|++||+|+|++.+|..
T Consensus       237 gl~-------~~~vleni~~~~-----~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~  289 (400)
T 3lda_A          237 GLD-------PDDALNNVAYAR-----AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTD  289 (400)
T ss_dssp             TCC-------HHHHHHTEEEEE-----CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC--
T ss_pred             CCC-------hHhHhhcEEEec-----cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchh
Confidence            542       124555554422     1222 222333322222  3579999999999999864

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=98.69  E-value=1e-08  Score=96.06  Aligned_cols=49  Identities=14%  Similarity=0.009  Sum_probs=44.7

Q ss_pred             CCCCC-ChhhhhhHhhhhhhcCCC--cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          205 YAPSF-DHGVGDPVEDDILVGLQH--KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       205 ~~~~l-S~G~~qrv~ia~al~~~p--~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++..| ||||+||+++|++++.+|  ++||+|||+++||+.....+.++|.+
T Consensus       393 ~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~  444 (517)
T 4ad8_A          393 PLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSR  444 (517)
T ss_dssp             BSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHH
T ss_pred             cHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHH
Confidence            34567 999999999999999999  99999999999999999999988853

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=98.68  E-value=9.3e-10  Score=92.62  Aligned_cols=53  Identities=23%  Similarity=0.318  Sum_probs=40.4

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~  144 (254)
                      .|+++|+...|+.           ++++.+ ++++|+||||||||||+++|+|++.   |++|. .+++
T Consensus         9 ~l~l~~~~~~~~~-----------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~---~~~G~i~~~g   62 (227)
T 1qhl_A            9 SLTLINWNGFFAR-----------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALI---PDLTLLHFRN   62 (227)
T ss_dssp             EEEEEEETTEEEE-----------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHS---CCTTTC----
T ss_pred             EEEEEeeecccCC-----------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccc---cCCCeEEECC
Confidence            5788888766532           344555 8999999999999999999999997   99998 4544

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=98.66  E-value=3.1e-08  Score=79.44  Aligned_cols=39  Identities=15%  Similarity=0.284  Sum_probs=34.3

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      +++++++.+| +.+|+||||||||||+++|.+++.   +..|.
T Consensus        18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~---~~~~~   56 (182)
T 3kta_A           18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLG---GLSAK   56 (182)
T ss_dssp             SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTT---CCCTG
T ss_pred             ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHc---CCccc
Confidence            6788889888 999999999999999999999985   65554

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.66  E-value=8.2e-09  Score=84.53  Aligned_cols=47  Identities=17%  Similarity=0.130  Sum_probs=35.6

Q ss_pred             ecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           81 RCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        81 ~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|+++.++...    +.+.+++..++|++++|+|||||||||++++|++.+
T Consensus         3 ~~~~~~~~~~~----~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l   49 (200)
T 3uie_A            3 TNIKWHECSVE----KVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQML   49 (200)
T ss_dssp             -------CCCC----HHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcccccccC----HHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            35666665533    557888889999999999999999999999999998

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=98.62  E-value=4.2e-08  Score=80.48  Aligned_cols=32  Identities=28%  Similarity=0.540  Sum_probs=28.2

Q ss_pred             eeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       100 vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +--.+.+|.+++|+|++||||||+++.|++.+
T Consensus        14 ~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           14 LVPRGSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             ccccCCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            33457789999999999999999999999976

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=98.62  E-value=2.3e-08  Score=81.06  Aligned_cols=38  Identities=8%  Similarity=0.049  Sum_probs=32.4

Q ss_pred             hhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          214 GDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       214 ~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .+.+.+|++++.+|+++++|  ++++|....+++.+.+.+
T Consensus       151 ~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~  188 (191)
T 1oix_A          151 AVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT  188 (191)
T ss_dssp             CSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence            34567889999999999999  999999999999887753

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=98.61  E-value=1e-08  Score=84.14  Aligned_cols=30  Identities=23%  Similarity=0.485  Sum_probs=27.7

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..++|++++|+|+||||||||+++|++++.
T Consensus        18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~   47 (201)
T 1rz3_A           18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (201)
T ss_dssp             CCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            467899999999999999999999999984

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.60  E-value=2.3e-09  Score=97.14  Aligned_cols=28  Identities=25%  Similarity=0.412  Sum_probs=25.9

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .+..|..+||+|+||+|||||+++|+|.
T Consensus        16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           16 RPGNNLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             SSSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             cccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4678999999999999999999999993

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=98.59  E-value=7.5e-09  Score=96.90  Aligned_cols=46  Identities=20%  Similarity=0.215  Sum_probs=41.4

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCC
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDS  144 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~  144 (254)
                      +++++++.+++|++++|+||||||||||+++|+|+++   |+.|. .+.+
T Consensus       249 ~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~---~~~giitied  295 (511)
T 2oap_1          249 VLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIP---PDAKVVSIED  295 (511)
T ss_dssp             HHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSC---TTCCEEEEES
T ss_pred             HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCC---CCCCEEEEcC
Confidence            5689999999999999999999999999999999997   88888 4544

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=98.58  E-value=2.8e-08  Score=81.21  Aligned_cols=37  Identities=35%  Similarity=0.382  Sum_probs=25.7

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++|+||++.+|++++|+|++||||||+.+.|++.+.
T Consensus        14 ~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~   50 (199)
T 3vaa_A           14 GTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN   50 (199)
T ss_dssp             ----------CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            6799999999999999999999999999999998873

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.57  E-value=3.1e-08  Score=80.77  Aligned_cols=31  Identities=23%  Similarity=0.424  Sum_probs=26.8

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++.+|++++|+|||||||||++++|++++.
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~   31 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPS   31 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTT
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhC
Confidence            3578999999999999999999999999984

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.57  E-value=2.3e-08  Score=81.95  Aligned_cols=27  Identities=41%  Similarity=0.523  Sum_probs=23.5

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++|++++|+||||||||||+++|+|++
T Consensus         2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~   28 (198)
T 1lvg_A            2 AGPRPVVLSGPSGAGKSTLLKKLFQEH   28 (198)
T ss_dssp             ---CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            478999999999999999999999998

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.47  E-value=1e-07  Score=87.23  Aligned_cols=46  Identities=11%  Similarity=0.059  Sum_probs=42.6

Q ss_pred             CCChhhhhhHhhhhhhc----CCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          208 SFDHGVGDPVEDDILVG----LQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       208 ~lS~G~~qrv~ia~al~----~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      .||+||+|++++|++++    .+|+++|||||+++||+..+..+.+++.+
T Consensus       333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~  382 (430)
T 1w1w_A          333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRR  382 (430)
T ss_dssp             GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHH
Confidence            48999999999999998    58999999999999999999999998853

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.47  E-value=9.1e-08  Score=77.74  Aligned_cols=35  Identities=9%  Similarity=0.107  Sum_probs=29.4

Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ....|++++.+++++++|  ++++|....+++.+.+.
T Consensus       129 ~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~  163 (199)
T 2f9l_A          129 PTDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNIL  163 (199)
T ss_dssp             CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHH
Confidence            345678888899999999  99999999888887764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.46  E-value=3.9e-08  Score=85.89  Aligned_cols=38  Identities=24%  Similarity=0.255  Sum_probs=30.6

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ec
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SF  142 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~  142 (254)
                      |++..|++++|+||||||||||+|+|+|+..   |+.|+ .+
T Consensus       164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~---~~~G~i~~  202 (301)
T 1u0l_A          164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLK---LRVSEVSE  202 (301)
T ss_dssp             HHHHSSSEEEEECSTTSSHHHHHHHHSTTCC---CC------
T ss_pred             HHHhcCCeEEEECCCCCcHHHHHHHhccccc---ccccceec
Confidence            4566799999999999999999999999997   99998 44

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=98.45  E-value=1.3e-07  Score=85.00  Aligned_cols=48  Identities=15%  Similarity=0.169  Sum_probs=42.3

Q ss_pred             CCCCChhhhhhH------hhhhhhcCC-CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          206 APSFDHGVGDPV------EDDILVGLQ-HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       206 ~~~lS~G~~qrv------~ia~al~~~-p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +..+|+||+||+      ++|+++..+ |++||||||+++||+..+..+.+++.+
T Consensus       278 ~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~  332 (371)
T 3auy_A          278 IDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRK  332 (371)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             hHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHH
Confidence            457999999988      456788889 999999999999999999999998853

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.44  E-value=1.1e-07  Score=76.53  Aligned_cols=26  Identities=15%  Similarity=0.438  Sum_probs=24.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|++++|+||||||||||+++|++.+
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~   29 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKH   29 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            68999999999999999999999987

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.42  E-value=1.3e-07  Score=77.19  Aligned_cols=30  Identities=27%  Similarity=0.312  Sum_probs=25.2

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +..++|++++|+|+||||||||+++|++.+
T Consensus        24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             hcCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            456789999999999999999999999987

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=98.39  E-value=8e-07  Score=81.87  Aligned_cols=124  Identities=13%  Similarity=0.120  Sum_probs=70.9

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      .|+++...+++|+++.|.|++|+|||||+..|++...   +..|          ....++...        ++..+....
T Consensus       192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~---~~~g----------~~Vl~~s~E--------~s~~~l~~r  250 (454)
T 2r6a_A          192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA---TKTN----------ENVAIFSLE--------MSAQQLVMR  250 (454)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH---HHSS----------CCEEEEESS--------SCHHHHHHH
T ss_pred             HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH---HhCC----------CcEEEEECC--------CCHHHHHHH
Confidence            5678877899999999999999999999999998773   1111          112223222        222221111


Q ss_pred             H-HHHcCC---------CCCccHHHHHHHHHhhccCC--CCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCC
Q 025366          176 A-HARRGA---------PWTFNPLLLLNCLKNLRNQG--SVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (254)
Q Consensus       176 ~-~~~~g~---------~~~~~~~~~~~~l~~l~l~~--~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD  240 (254)
                      . ....++         ....+...+.+.++.+....  -...+.+|.++.+..+....-..++++||+|++....+
T Consensus       251 ~~~~~~~~~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d~~~~s~~~i~~~~~~l~~~~~~~livID~l~~~~~  327 (454)
T 2r6a_A          251 MLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSNAGIYIDDTPSIRVSDIRAKCRRLKQESGLGMIVIDYLQLIQG  327 (454)
T ss_dssp             HHHHHHTCCHHHHHTSCCCHHHHHHHHHHHHHHHSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECGGGSCC
T ss_pred             HHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEccHHHhcc
Confidence            1 111222         11122233444444443221  11235678887764433322236899999999998875

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=98.39  E-value=9.4e-07  Score=73.68  Aligned_cols=36  Identities=19%  Similarity=0.484  Sum_probs=28.0

Q ss_pred             cccce-eeeeCCCeEEEEECCCCCcHHHHHHHHH-Hhh
Q 025366           96 PTSAL-ASNVNVKHIVGLAGPPGAGKSTLAAEVV-RRI  131 (254)
Q Consensus        96 al~~v-sl~i~~GeivgLiGpNGsGKSTLlk~L~-Gll  131 (254)
                      .|+.+ .--+++|++++|+||||||||||+..++ +..
T Consensus        11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~   48 (247)
T 2dr3_A           11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGL   48 (247)
T ss_dssp             THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            34555 5568999999999999999999965554 444

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=98.38  E-value=3.7e-08  Score=83.36  Aligned_cols=48  Identities=27%  Similarity=0.375  Sum_probs=40.9

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+++++.+.|+...    +++++++.+++|  ++|.||||+|||||+++|++..
T Consensus        26 ~~l~~l~~~~~~~~----~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~   73 (254)
T 1ixz_A           26 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   73 (254)
T ss_dssp             HHHHHHHHHHHCHH----HHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHh
Confidence            45667777786532    569999999999  8999999999999999999987

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=98.38  E-value=4.4e-07  Score=84.16  Aligned_cols=35  Identities=31%  Similarity=0.511  Sum_probs=30.1

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.++++.+++|  +.|.||+|+|||||++.|++...
T Consensus        40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~   74 (476)
T 2ce7_A           40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEAN   74 (476)
T ss_dssp             HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcC
Confidence            347777888777  78999999999999999999873

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=98.37  E-value=4.5e-08  Score=84.17  Aligned_cols=48  Identities=27%  Similarity=0.375  Sum_probs=41.0

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+++++.+.|+...    +++++++.+++|  ++|+||||+|||||+++|++.+
T Consensus        50 ~~l~~l~~~~~~~~----~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~   97 (278)
T 1iy2_A           50 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEA   97 (278)
T ss_dssp             HHHHHHHHHHHCHH----HHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCHH----HHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHc
Confidence            35567788886533    569999999999  8999999999999999999987

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=98.36  E-value=1.4e-07  Score=85.10  Aligned_cols=36  Identities=28%  Similarity=0.322  Sum_probs=34.4

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +++++++.+++|++++|+||||||||||+++|+|..
T Consensus       158 ~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          158 FLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             HHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            669999999999999999999999999999999976

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=98.30  E-value=2.9e-07  Score=74.21  Aligned_cols=25  Identities=32%  Similarity=0.599  Sum_probs=22.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |++++|+||||||||||+++|++..
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~~   26 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQL   26 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCcHHHHHHHHhccc
Confidence            6899999999999999999998743

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.30  E-value=6.1e-08  Score=85.00  Aligned_cols=36  Identities=19%  Similarity=0.241  Sum_probs=26.9

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      +++.+|++++|+||||+|||||+|+|+|+..   |..|+
T Consensus       168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~---~~~G~  203 (307)
T 1t9h_A          168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELG---LRTNE  203 (307)
T ss_dssp             GGGGTTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred             HhhcCCCEEEEECCCCCCHHHHHHHhccccc---ccccc
Confidence            7788999999999999999999999999987   88898

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.30  E-value=3.7e-07  Score=75.14  Aligned_cols=28  Identities=29%  Similarity=0.513  Sum_probs=26.3

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++|++++|+||||||||||++.|++.++
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~   33 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPE   33 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            5799999999999999999999999984

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=98.26  E-value=7.3e-07  Score=81.46  Aligned_cols=46  Identities=17%  Similarity=0.362  Sum_probs=38.0

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -|+++|+ +.|++.       .  .+++.+|++++|+||||||||||+++|++++.
T Consensus         6 ~l~~~~~-~~~~~~-------~--~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~   51 (430)
T 1w1w_A            6 GLELSNF-KSYRGV-------T--KVGFGESNFTSIIGPNGSGKSNMMDAISFVLG   51 (430)
T ss_dssp             EEEEESC-SSCCSE-------E--EEECTTCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEeCE-EEECCc-------e--eEEecCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            4788899 788651       1  24467799999999999999999999999985

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=98.25  E-value=6.3e-07  Score=71.24  Aligned_cols=27  Identities=41%  Similarity=0.625  Sum_probs=25.2

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+|++++|+|+|||||||++++|++.+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            469999999999999999999999986

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.24  E-value=7.5e-08  Score=85.56  Aligned_cols=55  Identities=24%  Similarity=0.257  Sum_probs=47.5

Q ss_pred             CcceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           74 EIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        74 ~~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.+++.+++.+.|+...    +++++++.+.++.+++|+|+||+|||||++.|++.+.
T Consensus        27 ~i~~ie~~~~~~~~~~~~----~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~   81 (341)
T 2p67_A           27 AMTLVESRHPRHQALSTQ----LLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI   81 (341)
T ss_dssp             HHHHHHCCCHHHHHHHHH----HHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             hhhHhhcCCchhhhHHHH----HHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            355678888888887643    5689999999999999999999999999999999985

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=98.24  E-value=2.7e-07  Score=78.44  Aligned_cols=33  Identities=24%  Similarity=0.444  Sum_probs=29.8

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHH---HhhcccCCCCce
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVV---RRINKIWPQKAS  140 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~---Gll~~~~p~~G~  140 (254)
                      .+|++++|+|||||||||++++|+   |+..   ++.|.
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~---~d~g~   60 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAESLNWRL---LDSGA   60 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHHHTTCEE---EEHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHhcCCCc---CCCCc
Confidence            679999999999999999999999   7664   78887

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=98.23  E-value=3e-07  Score=76.95  Aligned_cols=30  Identities=20%  Similarity=0.209  Sum_probs=27.1

Q ss_pred             eeeeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      +...++|++++|.|+||||||||+++|+++
T Consensus        14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             BTTTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             cCCCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            345678999999999999999999999987

>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*

Probab=98.21  E-value=1.4e-07  Score=88.10  Aligned_cols=31  Identities=16%  Similarity=0.249  Sum_probs=27.8

Q ss_pred             ceeeeeCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus        99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      .+.+++.++..+.|+|.+||||||+++.|..
T Consensus       159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~  189 (512)
T 2ius_A          159 PVVADLAKMPHLLVAGTTGSGASVGVNAMIL  189 (512)
T ss_dssp             EEEEEGGGSCSEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEcccCceEEEECCCCCCHHHHHHHHHH
Confidence            4678888899999999999999999998875

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=98.19  E-value=6.9e-07  Score=70.70  Aligned_cols=27  Identities=41%  Similarity=0.646  Sum_probs=24.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .|++++|+|+|||||||++++|++.+.
T Consensus         3 ~~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            3 EKRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            367899999999999999999999874

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=98.19  E-value=1.7e-06  Score=73.27  Aligned_cols=120  Identities=24%  Similarity=0.408  Sum_probs=65.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcC----
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRG----  181 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g----  181 (254)
                      ...+|+|.|+.||||||+.+.|+..+..  +    .++ .  ......++..|+++..   +.. ....  ....+    
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~--~----~~d-~--~~~~~~~i~~D~~~~~---~~~-~~~~--~~~~g~~~f   85 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQLLGQ--N----EVD-Y--RQKQVVILSQDSFYRV---LTS-EQKA--KALKGQFNF   85 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHTTG--G----GSC-G--GGCSEEEEEGGGGBCC---CCH-HHHH--HHHTTCSCT
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHhhh--h----ccc-c--cCCceEEEecCccccc---cCh-hhhh--hhccCCCCC
Confidence            3468999999999999999999986630  0    000 0  0011224677776432   221 1111  11222    


Q ss_pred             -CCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          182 -APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       182 -~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                       .+..++...+.+.++.+..+.....+.|+.....++.-... ....+++|+|+++...++
T Consensus        86 ~~~~~~d~~~l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~-~~~~~~vIveG~~~~~~~  145 (252)
T 1uj2_A           86 DHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVT-VYPADVVLFEGILAFYSQ  145 (252)
T ss_dssp             TSGGGBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEEE-ECCCSEEEEECTTTTSSH
T ss_pred             CCcchhhHHHHHHHHHHHHcCCeeecCccccccccCCCceee-eCCCcEEEEeeeccccCH
Confidence             23445556667777776544444444444333333211111 235689999998876564

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.16  E-value=1.1e-05  Score=73.71  Aligned_cols=27  Identities=30%  Similarity=0.429  Sum_probs=25.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++.+++++|+||+||||++..|+..+.
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~  122 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYK  122 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999999985

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.15  E-value=1.2e-06  Score=71.91  Aligned_cols=30  Identities=17%  Similarity=0.310  Sum_probs=26.2

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +...+|++++|+||||||||||++.|.+..
T Consensus        14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~   43 (197)
T 3ney_A           14 LYFQGRKTLVLIGASGVGRSHIKNALLSQN   43 (197)
T ss_dssp             --CCSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CCCCCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence            445579999999999999999999999987

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=98.15  E-value=1e-06  Score=77.60  Aligned_cols=35  Identities=26%  Similarity=0.250  Sum_probs=33.2

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+++|.+++|++++|+|+||+||||++..|++.+.
T Consensus        96 ~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~  130 (320)
T 1zu4_A           96 YRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYA  130 (320)
T ss_dssp             CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHH
T ss_pred             cCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999995

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=98.13  E-value=4.5e-06  Score=74.39  Aligned_cols=29  Identities=24%  Similarity=0.456  Sum_probs=25.9

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -+++|+++.|.||||+|||||+..++...
T Consensus        57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~   85 (349)
T 2zr9_A           57 GLPRGRVIEIYGPESSGKTTVALHAVANA   85 (349)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            47799999999999999999988888665

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=98.10  E-value=1e-06  Score=77.47  Aligned_cols=38  Identities=29%  Similarity=0.313  Sum_probs=29.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcc-----cCCCCce-ecCC
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRINK-----IWPQKAS-SFDS  144 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~~-----~~p~~G~-~~~~  144 (254)
                      -++++|+|+||||||||+|.|.|+...     +.|+.|+ .++|
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg   47 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDD   47 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccH
Confidence            368999999999999999999998510     0167777 4444

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=98.09  E-value=1e-06  Score=83.05  Aligned_cols=34  Identities=32%  Similarity=0.342  Sum_probs=31.0

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKA  139 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G  139 (254)
                      .+++|++++|+|+||||||||+++|++++.   |+.|
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~---~~~G  398 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLM---EMGG  398 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHH---TTCS
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhc---ccCC
Confidence            578999999999999999999999999996   6665

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=98.06  E-value=2.9e-05  Score=68.79  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=24.4

Q ss_pred             CCe--EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKH--IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~Ge--ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.  .+.|.||+|+|||||++.+++.+.
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~   69 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYK   69 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHh
Confidence            456  899999999999999999999984

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=98.04  E-value=1.3e-05  Score=73.28  Aligned_cols=45  Identities=22%  Similarity=0.220  Sum_probs=37.8

Q ss_pred             EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .++|++.|+...      .+++|.  ++++++++|+|||||||++..|++.+.
T Consensus        79 ~~~L~~~~~~~~------~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~  123 (425)
T 2ffh_A           79 YEALKEALGGEA------RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYK  123 (425)
T ss_dssp             HHHHHHHTTSSC------CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCc------ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            346778887632      577787  899999999999999999999999995

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=98.01  E-value=4.4e-06  Score=65.29  Aligned_cols=32  Identities=22%  Similarity=0.307  Sum_probs=25.3

Q ss_pred             ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +..+++.+ .+.+|+|||||||||++..|.-.+
T Consensus        16 ~~~i~f~~-g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEcCC-CeEEEECCCCCCHHHHHHHHHHHH
Confidence            34445554 489999999999999999998655

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=97.98  E-value=2.8e-05  Score=66.86  Aligned_cols=26  Identities=38%  Similarity=0.507  Sum_probs=23.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++..+.|.||+|+|||||++.|++..
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~   78 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATEC   78 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999987

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=97.98  E-value=2.6e-06  Score=76.68  Aligned_cols=53  Identities=23%  Similarity=0.270  Sum_probs=46.1

Q ss_pred             eEEEecceeecccccceecccc--------------ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           77 VVEARCMDEVYDALAQRLLPTS--------------ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~--------------~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.++||+..|...  +. .++              |+.+.+.+|+.++|+||+|+|||||++.|++.+.
T Consensus       133 ri~Fe~ltp~yP~e--r~-~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~  199 (422)
T 3ice_A          133 KILFENLTPLHANS--RL-RMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA  199 (422)
T ss_dssp             SCCTTTSCEESCCS--BC-CCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred             CceeccccccCCCC--cc-ccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence            57889999999873  22 446              8999999999999999999999999999999874

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=97.97  E-value=1.6e-06  Score=81.66  Aligned_cols=50  Identities=26%  Similarity=0.412  Sum_probs=41.3

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +-++++.+.|....    ++.++++++ +|++++|+||||+|||||+++|++.+.
T Consensus        84 ~G~~~vk~~i~~~~----~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~  133 (543)
T 3m6a_A           84 HGLEKVKERILEYL----AVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLG  133 (543)
T ss_dssp             SSCHHHHHHHHHHH----HHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHH----HHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence            33456777775532    668888888 799999999999999999999999985

>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*

Probab=97.97  E-value=7.1e-06  Score=80.40  Aligned_cols=45  Identities=9%  Similarity=-0.090  Sum_probs=36.1

Q ss_pred             CCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCC-CCCHHHHHHHH
Q 025366          204 VYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYL-FLDGGVWKDVS  248 (254)
Q Consensus       204 ~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~-~lD~~~~~~l~  248 (254)
                      ..+-..+.|+.+|..++..++.++++||+||++. ++|......+.
T Consensus       186 ~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l  231 (773)
T 2xau_A          186 TILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLL  231 (773)
T ss_dssp             CSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHH
T ss_pred             CCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHH
Confidence            3445678999999999998999999999999996 88866544433

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=97.96  E-value=6.6e-06  Score=71.37  Aligned_cols=115  Identities=15%  Similarity=0.118  Sum_probs=57.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHH---HHHH----
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK---EAHA----  178 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~---~~~~----  178 (254)
                      ++.+|||.|++||||||+.+.|...+..              ......++..|+++..    +..+...   ....    
T Consensus         4 ~~~iIgItG~sGSGKSTva~~L~~~lg~--------------~~~~~~vI~~D~~~r~----~~~~~~~~~~~~~~~g~~   65 (290)
T 1a7j_A            4 KHPIISVTGSSGAGTSTVKHTFDQIFRR--------------EGVKAVSIEGDAFHRF----NRADMKAELDRRYAAGDA   65 (290)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHHHHHH--------------HTCCEEEEEGGGGBSC----CHHHHHHHHHHHHHHTCT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHhh--------------cCCCeeEeecchhhcC----CHHHhhhhhhhhhhccCc
Confidence            4568999999999999999999986520              0111345788887632    1111110   0011    


Q ss_pred             HcCC--CCCccHHHHHHHHHhhccCCCCCCCCCChh---------hhhhHhhhhhhcCCCcEEEEeCCCCC
Q 025366          179 RRGA--PWTFNPLLLLNCLKNLRNQGSVYAPSFDHG---------VGDPVEDDILVGLQHKVVIVDGNYLF  238 (254)
Q Consensus       179 ~~g~--~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G---------~~qrv~ia~al~~~p~vlIlDEp~~~  238 (254)
                      .+..  ++.++...+.+.+..+..+.....+.|.++         ......-...+....+++|+|+++.+
T Consensus        66 ~~~~fg~~~~d~~~l~~~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~  136 (290)
T 1a7j_A           66 TFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGA  136 (290)
T ss_dssp             TCSTTSGGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTT
T ss_pred             CcCCCChhhhcHHHHHHHHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccc
Confidence            1222  334445555566665544333333444221         01111000122235789999999987

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.95  E-value=5.5e-06  Score=69.36  Aligned_cols=36  Identities=25%  Similarity=0.441  Sum_probs=27.1

Q ss_pred             ccceeeeeC---CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           97 TSALASNVN---VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        97 l~~vsl~i~---~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      |.++++.+.   +|.++.|.|++||||||+++.|+..+.
T Consensus        13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~   51 (229)
T 4eaq_A           13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLV   51 (229)
T ss_dssp             -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            466666665   899999999999999999999999984

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.94  E-value=4.9e-06  Score=68.64  Aligned_cols=34  Identities=24%  Similarity=0.446  Sum_probs=27.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      +.+++|+|++||||||++++|++.+.-..++.|.
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~   38 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGA   38 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcc
Confidence            5689999999999999999999987322256666

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.92  E-value=6.5e-06  Score=65.63  Aligned_cols=28  Identities=29%  Similarity=0.306  Sum_probs=25.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+|++++|+|++||||||++++|++.+.
T Consensus         3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~   30 (179)
T 2pez_A            3 MRGCTVWLTGLSGAGKTTVSMALEEYLV   30 (179)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4689999999999999999999999874

>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}

Probab=97.92  E-value=1.3e-05  Score=71.04  Aligned_cols=106  Identities=17%  Similarity=0.157  Sum_probs=66.1

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKE  175 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~  175 (254)
                      .|+.+.--+.+|+++.|.|++|+|||||+..++....    ..          .....++...        ++..+....
T Consensus        35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a----~~----------g~~Vl~fSlE--------ms~~ql~~R   92 (338)
T 4a1f_A           35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL----ND----------DRGVAVFSLE--------MSAEQLALR   92 (338)
T ss_dssp             HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH----HT----------TCEEEEEESS--------SCHHHHHHH
T ss_pred             HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH----Hc----------CCeEEEEeCC--------CCHHHHHHH
Confidence            3455555789999999999999999999988887763    01          1112222221        333322222


Q ss_pred             HHH-HcCCCCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCC
Q 025366          176 AHA-RRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLD  240 (254)
Q Consensus       176 ~~~-~~g~~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD  240 (254)
                      ... ..++    +...+.             -..||.++.+|+..|...+.+++++|.|+|...++
T Consensus        93 lls~~~~v----~~~~l~-------------~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~  141 (338)
T 4a1f_A           93 ALSDLTSI----NMHDLE-------------SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE  141 (338)
T ss_dssp             HHHHHHCC----CHHHHH-------------HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred             HHHHhhCC----CHHHHh-------------cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence            111 1111    111111             13688999999998888888889999999876554

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.85  E-value=6.9e-06  Score=66.95  Aligned_cols=22  Identities=45%  Similarity=0.640  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHH
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~G  129 (254)
                      .+++|+|+|||||||++++|++
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999999998

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.82  E-value=1.1e-05  Score=64.80  Aligned_cols=32  Identities=19%  Similarity=0.303  Sum_probs=26.8

Q ss_pred             ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus        99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      ++|+...++.+++|+|++||||||+.+.|+..
T Consensus         2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            46788889999999999999999999999987

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=97.81  E-value=7.3e-06  Score=76.64  Aligned_cols=35  Identities=20%  Similarity=0.302  Sum_probs=32.0

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+++++|++.+| +.+|+|+||||||||+.+|..++
T Consensus        50 ~~~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~ll   84 (517)
T 4ad8_A           50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLL   84 (517)
T ss_dssp             TBSCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHT
T ss_pred             ceeeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHh
Confidence            447889999999 99999999999999999999886

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=97.81  E-value=5.6e-06  Score=72.15  Aligned_cols=46  Identities=15%  Similarity=0.225  Sum_probs=38.3

Q ss_pred             Eecceeecccccceeccccc-eeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           80 ARCMDEVYDALAQRLLPTSA-LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        80 i~~l~~~y~~~~~~vlal~~-vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+++.+.|+...      .+ ++++.+ +++++++|+||+||||++..|++.+.
T Consensus        77 ~~~l~~~~~~~~------~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~  123 (297)
T 1j8m_F           77 YDELSNLFGGDK------EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYK  123 (297)
T ss_dssp             HHHHHHHTTCSC------CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhcccc------ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            456777887632      46 788876 99999999999999999999999984

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.81  E-value=3.5e-06  Score=74.32  Aligned_cols=47  Identities=28%  Similarity=0.492  Sum_probs=39.3

Q ss_pred             cceeecccccceeccccceeeeeCCCeE--EEEECCCCCcHHHHHHHHHHhhc
Q 025366           82 CMDEVYDALAQRLLPTSALASNVNVKHI--VGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        82 ~l~~~y~~~~~~vlal~~vsl~i~~Gei--vgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++...|+...    +++.++..++.|++  +.|.||+|+||||+++++++.+.
T Consensus        23 ~~~~~~g~~~----~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~   71 (340)
T 1sxj_C           23 TLDEVYGQNE----VITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY   71 (340)
T ss_dssp             SGGGCCSCHH----HHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cHHHhcCcHH----HHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence            4555666533    55888899999998  99999999999999999999875

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.79  E-value=1.1e-05  Score=65.78  Aligned_cols=29  Identities=28%  Similarity=0.460  Sum_probs=26.0

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ...+|.+++|+||+|||||||++.|+..+
T Consensus         8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~   36 (204)
T 2qor_A            8 HMARIPPLVVCGPSGVGKGTLIKKVLSEF   36 (204)
T ss_dssp             -CCCCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred             ccccCCEEEEECCCCCCHHHHHHHHHHhC
Confidence            35679999999999999999999999876

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.77  E-value=1.2e-05  Score=65.32  Aligned_cols=21  Identities=43%  Similarity=0.589  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025366          109 IVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~G  129 (254)
                      +++|+|+|||||||+++.|++
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999999

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=97.76  E-value=4.5e-05  Score=68.06  Aligned_cols=30  Identities=27%  Similarity=0.365  Sum_probs=27.6

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -+++|+++.|.||||||||||+..++....
T Consensus        57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~   86 (356)
T 3hr8_A           57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQ   86 (356)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            377999999999999999999999999874

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.75  E-value=2.7e-05  Score=69.68  Aligned_cols=23  Identities=22%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +++|+|++|||||||++.|+|..
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~  203 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLT  203 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            49999999999999999999876

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=97.74  E-value=4.9e-05  Score=65.55  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=23.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..+.|.||+|+||||+++.|++.+.
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~~~~   72 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAATLF   72 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHHHHc
Confidence            6899999999999999999999984

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=97.73  E-value=6.2e-06  Score=76.83  Aligned_cols=49  Identities=27%  Similarity=0.369  Sum_probs=39.7

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+++++.+.|....    ++.++++.+++|  +.|.||||+|||||+++|++...
T Consensus        41 ~~l~~lv~~l~~~~----~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           41 EELKEIVEFLKNPS----RFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             HHHHHHHHHHHCGG----GTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhchh----hhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC
Confidence            34556666665532    568999999988  89999999999999999999873

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.72  E-value=2.4e-05  Score=62.71  Aligned_cols=31  Identities=29%  Similarity=0.505  Sum_probs=27.7

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +...+|.++.|.|++||||||+++.|+..+.
T Consensus         8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~   38 (186)
T 2yvu_A            8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQ   38 (186)
T ss_dssp             CCCSCCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4456799999999999999999999999884

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.71  E-value=6.4e-05  Score=66.85  Aligned_cols=46  Identities=4%  Similarity=-0.232  Sum_probs=31.8

Q ss_pred             CCCCCChhhhhhHhhhhhhcCCCcEEEEe-CCCCCCCHHHHHHHHHHh
Q 025366          205 YAPSFDHGVGDPVEDDILVGLQHKVVIVD-GNYLFLDGGVWKDVSSMF  251 (254)
Q Consensus       205 ~~~~lS~G~~qrv~ia~al~~~p~vlIlD-Ep~~~lD~~~~~~l~~ll  251 (254)
                      ....++.++++.+. +.+...++-++++| ++..++|......+.+.+
T Consensus       228 ~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i  274 (357)
T 2e87_A          228 PISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEV  274 (357)
T ss_dssp             CSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHH
Confidence            34467788887775 44445567788899 888888877666655544

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=97.70  E-value=2.7e-05  Score=63.82  Aligned_cols=33  Identities=21%  Similarity=0.283  Sum_probs=25.9

Q ss_pred             ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +..+.+.+ .+.+|+|||||||||++.+|.-.+-
T Consensus        16 ~~~i~f~~-~~~~I~G~NgsGKStil~ai~~~l~   48 (203)
T 3qks_A           16 DTVVEFKE-GINLIIGQNGSGKSSLLDAILVGLY   48 (203)
T ss_dssp             SEEEECCS-EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEeCC-CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            34455554 5899999999999999999976653

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.70  E-value=1.9e-05  Score=64.70  Aligned_cols=31  Identities=29%  Similarity=0.306  Sum_probs=28.3

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.+.+|.++.|.|++||||||+++.|++.+.
T Consensus        20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            5577899999999999999999999999884

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.68  E-value=2.1e-05  Score=69.95  Aligned_cols=33  Identities=36%  Similarity=0.578  Sum_probs=28.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      .++.+++|+|++|||||||++.|+|.+.   +..|+
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~---~~~~~  104 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLT---ERGHK  104 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHH---HTTCC
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhh---hcCCe
Confidence            3478999999999999999999999875   55554

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.67  E-value=2.2e-05  Score=63.74  Aligned_cols=25  Identities=20%  Similarity=0.371  Sum_probs=23.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ..+++|+|++||||||+++.|++.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999987

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.64  E-value=6.4e-05  Score=64.09  Aligned_cols=29  Identities=38%  Similarity=0.576  Sum_probs=25.4

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +..+.-+.|.||+|+|||||++.|+..+.
T Consensus        48 ~~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           48 IEPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            45667799999999999999999999873

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.61  E-value=3.4e-05  Score=61.49  Aligned_cols=27  Identities=41%  Similarity=0.704  Sum_probs=23.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+|.+++|+|++||||||+.+.|+..+
T Consensus         2 ~~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            2 DVGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            358899999999999999999998655

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=97.61  E-value=0.00019  Score=63.47  Aligned_cols=29  Identities=17%  Similarity=0.198  Sum_probs=26.6

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -+++|+++.|.||+|+|||||+..++...
T Consensus       118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~  146 (343)
T 1v5w_A          118 GIESMAITEAFGEFRTGKTQLSHTLCVTA  146 (343)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred             CCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999998863

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=97.60  E-value=7.4e-05  Score=65.58  Aligned_cols=29  Identities=17%  Similarity=0.428  Sum_probs=26.4

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -+++|+++.|.|++|+|||||+..++...
T Consensus       103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          103 GIETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            57899999999999999999999988764

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.57  E-value=4.6e-05  Score=63.60  Aligned_cols=38  Identities=18%  Similarity=0.333  Sum_probs=28.5

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      .-.+|.+++|+|++||||||++++|++.+.-.+.+.|.
T Consensus        12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~   49 (236)
T 1q3t_A           12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGA   49 (236)
T ss_dssp             --CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHH
T ss_pred             cccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCC
Confidence            35678999999999999999999999865322244444

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=97.53  E-value=0.00099  Score=60.99  Aligned_cols=27  Identities=30%  Similarity=0.444  Sum_probs=24.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++.++.++|++|+||||++..|+..+.
T Consensus        99 ~p~vIlivG~~G~GKTTt~~kLA~~l~  125 (443)
T 3dm5_A           99 KPTILLMVGIQGSGKTTTVAKLARYFQ  125 (443)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999998884

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.53  E-value=4e-05  Score=60.54  Aligned_cols=26  Identities=38%  Similarity=0.434  Sum_probs=23.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|..++|+|++|+|||||++.|++..
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~~   28 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGRE   28 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            57889999999999999999999864

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.52  E-value=5.3e-05  Score=59.32  Aligned_cols=24  Identities=33%  Similarity=0.493  Sum_probs=22.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++|.|++||||||+++.|+..+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            789999999999999999998863

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.52  E-value=2.9e-05  Score=69.07  Aligned_cols=47  Identities=13%  Similarity=0.177  Sum_probs=32.7

Q ss_pred             EecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366           80 ARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus        80 i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      ++++.+.|+... ...+|++++++++   .|+|+|++|||||||++.|+|.
T Consensus        11 l~~~~~~~~~~~-~~~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~   57 (360)
T 3t34_A           11 IQRACTALGDHG-DSSALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGK   57 (360)
T ss_dssp             TTTTTTSCSSCC-SSCCC----CCCC---EEEEECBTTSSHHHHHHHHHTS
T ss_pred             HHHHHHhhCccc-cccccccccccCC---EEEEECCCCCcHHHHHHHHhCC
Confidence            345666666421 1126789999998   8999999999999999999994

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.50  E-value=1.4e-05  Score=71.45  Aligned_cols=46  Identities=17%  Similarity=0.135  Sum_probs=34.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ..+.+.++.+.|+...    ++++++|.|      +|+|++|+|||||++.|.+..
T Consensus        16 ~~v~~~~l~~~~~~k~----~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~   61 (361)
T 2qag_A           16 GYVGFANLPNQVHRKS----VKKGFEFTL------MVVGESGLGKSTLINSLFLTD   61 (361)
T ss_dssp             -----CCHHHHHHTHH----HHHCCEECE------EECCCTTSCHHHHHHHHTTCC
T ss_pred             ceEEeccchHHhCCee----ecCCCCEEE------EEEcCCCCCHHHHHHHHhCCC
Confidence            3578899999997743    558888876      999999999999999998764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.49  E-value=3.8e-05  Score=66.83  Aligned_cols=26  Identities=27%  Similarity=0.465  Sum_probs=23.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++.+++|+|++|+|||||++.|.|..
T Consensus         7 r~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            7 YCGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence            45589999999999999999999874

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.48  E-value=4.6e-05  Score=64.39  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=28.5

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+.. ....+.++.|+|++||||||+++.|+..+
T Consensus        24 ~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l   56 (253)
T 2p5t_B           24 RGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEF   56 (253)
T ss_dssp             TTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHT
T ss_pred             ccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            4443 56778999999999999999999999987

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=97.45  E-value=0.00018  Score=62.85  Aligned_cols=36  Identities=17%  Similarity=0.317  Sum_probs=30.7

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus        57 ~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~   92 (315)
T 3bh0_A           57 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM   92 (315)
T ss_dssp             HHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             HHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            456666668999999999999999999998887654

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.44  E-value=8e-05  Score=59.72  Aligned_cols=26  Identities=23%  Similarity=0.401  Sum_probs=23.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -.+++|+|++|||||||++.|.+.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~l~   31 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPALC   31 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence            35899999999999999999999874

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.44  E-value=8.3e-05  Score=58.77  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=23.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.++.|.|++||||||+.+.|+..+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            5789999999999999999999877

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.43  E-value=7.3e-05  Score=62.94  Aligned_cols=33  Identities=30%  Similarity=0.550  Sum_probs=24.3

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .++++.++.|  +.|.||+|+|||||++.|++...
T Consensus        38 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           38 QKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             -----CCCCE--EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             HHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcC
Confidence            4555555555  88999999999999999999874

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=97.43  E-value=7.2e-05  Score=59.96  Aligned_cols=34  Identities=21%  Similarity=0.098  Sum_probs=20.8

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      +++++++..+.. .++|+|++|+|||||++.+.+-
T Consensus        13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~   46 (190)
T 1m2o_B           13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKND   46 (190)
T ss_dssp             -----------C-EEEEEESTTSSHHHHHHHHHHS
T ss_pred             HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcC
Confidence            458888888766 6789999999999999999984

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=97.40  E-value=0.00012  Score=66.98  Aligned_cols=26  Identities=19%  Similarity=0.198  Sum_probs=23.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +..+.|.||+|+|||||++.|++.+.
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~  155 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVV  155 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999873

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=97.38  E-value=7.4e-05  Score=58.35  Aligned_cols=24  Identities=29%  Similarity=0.401  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ..++|+|++|+|||||++.++|..
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~~   27 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGEN   27 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999864

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.37  E-value=0.00012  Score=58.50  Aligned_cols=27  Identities=22%  Similarity=0.489  Sum_probs=24.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ..+.++.|.|++||||||+.+.|+..+
T Consensus         3 ~~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            3 QTPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            467899999999999999999998866

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.36  E-value=0.00013  Score=59.90  Aligned_cols=24  Identities=42%  Similarity=0.601  Sum_probs=22.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      .+.+++|.|++||||||+++.|+.
T Consensus         3 ~~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            3 LRYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            457899999999999999999998

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.36  E-value=0.00012  Score=58.24  Aligned_cols=25  Identities=24%  Similarity=0.498  Sum_probs=23.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |.++.|.|++||||||+++.|+..+
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l   27 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNL   27 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999998866

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.36  E-value=0.00011  Score=62.17  Aligned_cols=25  Identities=20%  Similarity=0.412  Sum_probs=22.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+++|+||+|||||||.+.|+..+.
T Consensus         2 ~li~I~G~~GSGKSTla~~La~~~~   26 (253)
T 2ze6_A            2 LLHLIYGPTCSGKTDMAIQIAQETG   26 (253)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCcCHHHHHHHHHhcCC
Confidence            3789999999999999999998873

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.34  E-value=0.00011  Score=57.34  Aligned_cols=20  Identities=35%  Similarity=0.670  Sum_probs=18.7

Q ss_pred             eEEEEECCCCCcHHHHHHHH
Q 025366          108 HIVGLAGPPGAGKSTLAAEV  127 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L  127 (254)
                      -+++|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            37899999999999999999

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.33  E-value=0.00013  Score=58.70  Aligned_cols=24  Identities=38%  Similarity=0.708  Sum_probs=22.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++|.|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            689999999999999999999763

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.32  E-value=0.00011  Score=58.12  Aligned_cols=24  Identities=33%  Similarity=0.499  Sum_probs=22.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++.|+|++||||||+.+.|+..+.
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l~   29 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDLD   29 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHcC
Confidence            589999999999999999999873

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=97.31  E-value=3.5e-05  Score=62.33  Aligned_cols=41  Identities=20%  Similarity=0.199  Sum_probs=29.1

Q ss_pred             eecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366           85 EVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus        85 ~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      ..|++.. .  +++++++..++.+ ++|+|++|+|||||++.+.+
T Consensus         7 ~~~~~~~-~--~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A            7 WIYSGFS-S--VLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             ------C-H--HHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred             HHHHHHH-H--HHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence            3455532 2  5588999888775 68999999999999999875

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=97.31  E-value=0.00026  Score=62.64  Aligned_cols=24  Identities=29%  Similarity=0.699  Sum_probs=22.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+++|+||+|||||||.+.|+..+
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l   31 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKF   31 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHc
Confidence            589999999999999999999987

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.30  E-value=0.00014  Score=61.11  Aligned_cols=26  Identities=31%  Similarity=0.627  Sum_probs=23.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+-+++|.||+||||||+++.|+..+
T Consensus         8 ~~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            8 GSLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34689999999999999999999776

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.30  E-value=0.00015  Score=58.29  Aligned_cols=25  Identities=40%  Similarity=0.526  Sum_probs=22.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      +..+|+|+|++||||||+.+.|+..
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3568999999999999999999875

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.27  E-value=0.00013  Score=57.85  Aligned_cols=27  Identities=33%  Similarity=0.519  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ..+.++.|.|++||||||+++.|+..+
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            457889999999999999999999766

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.25  E-value=0.0002  Score=57.75  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=23.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|.+++|.|+.||||||+++.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999865

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.25  E-value=0.00019  Score=57.07  Aligned_cols=26  Identities=23%  Similarity=0.367  Sum_probs=23.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.++.|+|++||||||+.+.|+..+.
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l~   30 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLTK   30 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhC
Confidence            56899999999999999999998763

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=97.25  E-value=0.00014  Score=57.52  Aligned_cols=23  Identities=30%  Similarity=0.459  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -.++|+|++|+|||||++.|++.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999999985

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.24  E-value=0.00018  Score=56.57  Aligned_cols=22  Identities=45%  Similarity=0.634  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHH
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~G  129 (254)
                      .++.|.|++||||||+.+.|+.
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            5789999999999999999987

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=97.24  E-value=0.00095  Score=58.70  Aligned_cols=27  Identities=33%  Similarity=0.431  Sum_probs=24.3

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ..+..+.|.||+|+|||||++.++..+
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~   68 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRL   68 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999999887

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.24  E-value=0.00021  Score=57.72  Aligned_cols=27  Identities=26%  Similarity=0.369  Sum_probs=24.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +|.+|+|.|+.||||||+++.|+..+.
T Consensus         3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~   29 (213)
T 2plr_A            3 KGVLIAFEGIDGSGKSSQATLLKDWIE   29 (213)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            477999999999999999999998773

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.23  E-value=7.6e-05  Score=60.71  Aligned_cols=24  Identities=29%  Similarity=0.559  Sum_probs=22.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++|.|++||||||+++.|+..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~   25 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFR   25 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            789999999999999999999873

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.22  E-value=0.00021  Score=57.19  Aligned_cols=27  Identities=30%  Similarity=0.585  Sum_probs=24.5

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++.+++|.|+.||||||+.+.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            7 KKTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999999766

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.22  E-value=0.00023  Score=56.73  Aligned_cols=25  Identities=40%  Similarity=0.591  Sum_probs=22.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.+|+|.|++||||||+.+.|+..+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5789999999999999999998765

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.20  E-value=0.00021  Score=57.71  Aligned_cols=24  Identities=38%  Similarity=0.667  Sum_probs=22.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++|.|++||||||+.+.|+..+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~lg   27 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAALG   27 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHhcC
Confidence            899999999999999999999763

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.19  E-value=0.00022  Score=57.79  Aligned_cols=27  Identities=22%  Similarity=0.279  Sum_probs=24.5

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+|.+|+|.|+.||||||+++.|+..+
T Consensus         8 ~~~~~I~l~G~~GsGKST~~~~L~~~l   34 (212)
T 2wwf_A            8 KKGKFIVFEGLDRSGKSTQSKLLVEYL   34 (212)
T ss_dssp             BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999865

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.17  E-value=0.00021  Score=61.91  Aligned_cols=31  Identities=29%  Similarity=0.445  Sum_probs=27.6

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.+.++..+.|.||+|+|||||++.|++...
T Consensus        44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~   74 (301)
T 3cf0_A           44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ   74 (301)
T ss_dssp             HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             cCCCCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence            4567889999999999999999999999863

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.16  E-value=0.00025  Score=61.26  Aligned_cols=28  Identities=29%  Similarity=0.527  Sum_probs=24.8

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ...+.++.|.||+||||||+.+.|+..+
T Consensus        30 ~~~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           30 VESPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             CSSCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4458899999999999999999998765

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.16  E-value=0.00026  Score=56.48  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+++|+|++|||||||+..|...+.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~   29 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAV   29 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhH
Confidence            4899999999999999999998873

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=97.16  E-value=0.00014  Score=57.84  Aligned_cols=23  Identities=26%  Similarity=0.501  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|++|+|||||++.+++..
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~~   26 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKTK   26 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC-
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999999863

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.15  E-value=0.00026  Score=57.44  Aligned_cols=27  Identities=30%  Similarity=0.383  Sum_probs=24.6

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+|.+|+|.|+.||||||+++.|+..+
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l   33 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEAL   33 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999999999765

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=97.11  E-value=0.0003  Score=62.82  Aligned_cols=31  Identities=26%  Similarity=0.324  Sum_probs=26.1

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      .+..+++.+ .+..|+|+|||||||++..|.=
T Consensus        17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             EEEEEECCS-EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cceEEecCC-CeEEEECCCCCCHHHHHHHHHH
Confidence            556666665 5899999999999999999985

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.11  E-value=0.00025  Score=57.44  Aligned_cols=23  Identities=35%  Similarity=0.609  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+.|+||||||||||++.|....
T Consensus         3 pIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            3 PIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHhC
Confidence            36799999999999999998765

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.11  E-value=0.0002  Score=56.69  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=19.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++.++.|.|++||||||+.+.|+..+
T Consensus         4 ~~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            4 RSPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             -CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            46799999999999999999998766

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.09  E-value=0.00029  Score=55.94  Aligned_cols=23  Identities=43%  Similarity=0.553  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|.|.|++||||||+++.|+..+
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l   25 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEIL   25 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999876

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.08  E-value=0.00032  Score=56.21  Aligned_cols=28  Identities=29%  Similarity=0.510  Sum_probs=24.9

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +..+.+|+|.|+.||||||+.+.|+..+
T Consensus         9 ~~~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A            9 LRKCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3457899999999999999999999876

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.06  E-value=0.00028  Score=67.98  Aligned_cols=32  Identities=25%  Similarity=0.431  Sum_probs=26.9

Q ss_pred             eeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++.+++++.++|+|++|+|||||++.|++...
T Consensus         3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~   34 (665)
T 2dy1_A            3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTG   34 (665)
T ss_dssp             ---CCCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CCccCCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence            45678899999999999999999999998763

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.03  E-value=0.00044  Score=56.76  Aligned_cols=26  Identities=42%  Similarity=0.603  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|.++.|+|+.||||||+.+.|+..+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999998876

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.02  E-value=0.00046  Score=62.32  Aligned_cols=28  Identities=25%  Similarity=0.427  Sum_probs=24.6

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .+..+..++|+|+||+|||||++.|+|.
T Consensus        18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           18 RFGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             CSSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             hccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            4567888999999999999999999987

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.00  E-value=0.00051  Score=55.47  Aligned_cols=26  Identities=42%  Similarity=0.655  Sum_probs=23.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+.+|+|.|+.||||||+.+.|+..+
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999866

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.99  E-value=0.00045  Score=55.75  Aligned_cols=27  Identities=30%  Similarity=0.516  Sum_probs=23.6

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ....+|+|.|+.||||||+.+.|+..+
T Consensus        13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           13 DQVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            446789999999999999999998665

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.97  E-value=0.00051  Score=53.78  Aligned_cols=25  Identities=36%  Similarity=0.390  Sum_probs=22.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++++|.|+.||||||+.+.|+..+
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHHHh
Confidence            3689999999999999999999876

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.97  E-value=0.00034  Score=58.17  Aligned_cols=25  Identities=32%  Similarity=0.410  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -.|+|+|++|+|||||++.|+|...
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCCc
Confidence            3689999999999999999999763

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.96  E-value=0.00089  Score=59.15  Aligned_cols=26  Identities=27%  Similarity=0.521  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++.++.|+||.|||||||...|+..+
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l   64 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHF   64 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHC
Confidence            46799999999999999999999876

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.96  E-value=0.00049  Score=54.64  Aligned_cols=25  Identities=40%  Similarity=0.662  Sum_probs=22.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.+++|.|+.||||||+.+.|+..+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998765

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.96  E-value=0.0005  Score=54.69  Aligned_cols=23  Identities=26%  Similarity=0.536  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68999999999999999999876

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.95  E-value=0.00083  Score=58.82  Aligned_cols=25  Identities=24%  Similarity=0.636  Sum_probs=22.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.++.|+||+|||||||...|+..+
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~   27 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRL   27 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhC
Confidence            5689999999999999999998776

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.95  E-value=0.0005  Score=56.03  Aligned_cols=23  Identities=39%  Similarity=0.653  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998765

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.94  E-value=0.00041  Score=55.12  Aligned_cols=25  Identities=32%  Similarity=0.562  Sum_probs=22.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+|+|+|++||||||+.+.|+..+.
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~lg   27 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKALG   27 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHcC
Confidence            4689999999999999999998763

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.94  E-value=0.00048  Score=56.85  Aligned_cols=27  Identities=22%  Similarity=0.421  Sum_probs=22.8

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++.++.|.|+.||||||+++.|+..+
T Consensus         5 ~~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            5 ARLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            346789999999999999999998765

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.94  E-value=0.00044  Score=54.13  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+++|.|++||||||+.+.|+..+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            368999999999999999999876

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.93  E-value=0.001  Score=58.48  Aligned_cols=24  Identities=33%  Similarity=0.519  Sum_probs=22.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++.|+||+|||||||.+.|+..+
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l   29 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADAL   29 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHc
Confidence            589999999999999999999887

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.91  E-value=0.00039  Score=59.15  Aligned_cols=24  Identities=29%  Similarity=0.445  Sum_probs=21.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|++|||||||++.|+|..
T Consensus         4 ~~i~lvG~~g~GKTTL~n~l~g~~   27 (271)
T 3k53_A            4 KTVALVGNPNVGKTTIFNALTGLR   27 (271)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999975

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.90  E-value=0.00063  Score=53.04  Aligned_cols=23  Identities=30%  Similarity=0.329  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +++|.|+.||||||+.+.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999866

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.88  E-value=0.00052  Score=56.35  Aligned_cols=27  Identities=22%  Similarity=0.311  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.++.|+|++||||||+.+.|+..+.
T Consensus         4 ~~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            4 DPLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999998764

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.88  E-value=0.00061  Score=55.59  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998765

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.87  E-value=0.0014  Score=57.33  Aligned_cols=25  Identities=32%  Similarity=0.538  Sum_probs=22.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ..++.|+||+|||||||...|+..+
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~   34 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKIL   34 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhC
Confidence            4689999999999999999999876

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.87  E-value=0.00066  Score=56.27  Aligned_cols=32  Identities=22%  Similarity=0.490  Sum_probs=26.8

Q ss_pred             eeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +-.+.+..++.|+||.||||+|.++.|+-.+.
T Consensus        23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g   54 (217)
T 3umf_A           23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH   54 (217)
T ss_dssp             -CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred             chhccCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            34456788999999999999999999998764

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.85  E-value=0.00072  Score=56.67  Aligned_cols=27  Identities=22%  Similarity=0.315  Sum_probs=24.0

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++-+++|.|++||||||+.+.|+..+
T Consensus        27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           27 KPDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            467899999999999999999998755

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.84  E-value=0.00064  Score=55.21  Aligned_cols=25  Identities=28%  Similarity=0.555  Sum_probs=23.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ..++||+|+.||||||+.+.|+..+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            5689999999999999999999875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.83  E-value=0.00072  Score=57.23  Aligned_cols=26  Identities=31%  Similarity=0.531  Sum_probs=23.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++.+|.|.|++||||||+.+.|+..+
T Consensus         3 ~~~lIvl~G~pGSGKSTla~~La~~L   28 (260)
T 3a4m_A            3 DIMLIILTGLPGVGKSTFSKNLAKIL   28 (260)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence            46789999999999999999999874

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.83  E-value=0.00047  Score=62.97  Aligned_cols=24  Identities=33%  Similarity=0.520  Sum_probs=22.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+||+|||||++.|+|..
T Consensus       181 ~kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          181 IKVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTST
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc
Confidence            479999999999999999999975

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.78  E-value=0.00078  Score=57.83  Aligned_cols=24  Identities=33%  Similarity=0.541  Sum_probs=21.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      ...+|+|.|++||||||+++.|+.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999999984

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.77  E-value=0.00078  Score=53.44  Aligned_cols=25  Identities=24%  Similarity=0.412  Sum_probs=22.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .-.++|+|+.|+|||||++.+.+..
T Consensus        48 ~~~i~vvG~~g~GKSsll~~l~~~~   72 (193)
T 2ged_A           48 QPSIIIAGPQNSGKTSLLTLLTTDS   72 (193)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            4478999999999999999999865

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.73  E-value=0.00089  Score=51.45  Aligned_cols=23  Identities=22%  Similarity=0.336  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+..
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~~   29 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKGI   29 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            57899999999999999998854

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.72  E-value=0.0019  Score=58.44  Aligned_cols=25  Identities=32%  Similarity=0.682  Sum_probs=22.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+++|+||+|||||||...|+..+.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC
Confidence            5789999999999999999998773

>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}

Probab=96.72  E-value=0.003  Score=57.64  Aligned_cols=36  Identities=17%  Similarity=0.272  Sum_probs=30.2

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .|+.+.--+.+|+++.|.|++|+|||||+..++...
T Consensus       189 ~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~  224 (444)
T 2q6t_A          189 ELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA  224 (444)
T ss_dssp             HHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             hhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            345555568899999999999999999998888766

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.71  E-value=0.0011  Score=54.19  Aligned_cols=27  Identities=26%  Similarity=0.340  Sum_probs=24.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+..+.|.||+|+|||||++.++..+.
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~   77 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARAN   77 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            578899999999999999999998874

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.71  E-value=0.001  Score=54.89  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++.|.|++||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998765

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.70  E-value=0.00061  Score=56.59  Aligned_cols=28  Identities=21%  Similarity=0.431  Sum_probs=23.4

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .+.+|+.+.+.||+||||||++..+...
T Consensus        72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~   99 (235)
T 3llm_A           72 AISQNSVVIIRGATGCGKTTQVPQFILD   99 (235)
T ss_dssp             HHHHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             HHhcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence            4567999999999999999988776543

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.69  E-value=0.001  Score=50.87  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|+.|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKKR   25 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999864

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.68  E-value=0.001  Score=50.88  Aligned_cols=23  Identities=35%  Similarity=0.456  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+-.
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~~~   27 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVTGT   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999988754

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=96.68  E-value=0.028  Score=51.26  Aligned_cols=28  Identities=29%  Similarity=0.388  Sum_probs=24.5

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+..+++++|++|+||||+.-.|+..+.
T Consensus        98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~  125 (433)
T 2xxa_A           98 QPPAVVLMAGLQGAGKTTSVGKLGKFLR  125 (433)
T ss_dssp             SSSEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567999999999999999999988774

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.67  E-value=0.001  Score=50.92  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++++|+.|+|||||++.+.+..
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~~   28 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYDE   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            57999999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.67  E-value=0.00092  Score=50.99  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++++|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~~   27 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQNH   27 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            48999999999999999998764

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.67  E-value=0.0016  Score=53.26  Aligned_cols=35  Identities=29%  Similarity=0.323  Sum_probs=28.2

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+++.-+.+. |..+.|+||+|+|||||+..|+...
T Consensus        24 ~lHa~~v~~~-g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           24 SMHGVLVDIY-GLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             CEESEEEEET-TEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             eeeEEEEEEC-CEEEEEECCCCCCHHHHHHHHHHhC
Confidence            4566666664 8899999999999999998887654

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.65  E-value=0.00091  Score=58.73  Aligned_cols=28  Identities=18%  Similarity=0.338  Sum_probs=25.2

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..+..+.|.||+|+|||||++.+++.+.
T Consensus        43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~   70 (386)
T 2qby_A           43 EKPNNIFIYGLTGTGKTAVVKFVLSKLH   70 (386)
T ss_dssp             CCCCCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999999874

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.64  E-value=0.0011  Score=50.97  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            57999999999999999998865

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.63  E-value=0.0011  Score=51.00  Aligned_cols=23  Identities=26%  Similarity=0.248  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|+.|+|||||++.+.+..
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCENK   30 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.63  E-value=0.0012  Score=51.51  Aligned_cols=24  Identities=29%  Similarity=0.354  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+..
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~~   32 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVNDK   32 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCc
Confidence            358999999999999999998854

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=96.62  E-value=0.00088  Score=57.32  Aligned_cols=24  Identities=25%  Similarity=0.416  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|++|+|||||++.|+|..
T Consensus         4 ~kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            4 TEIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999864

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.62  E-value=0.0012  Score=50.78  Aligned_cols=23  Identities=26%  Similarity=0.315  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSND   27 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            47899999999999999998764

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.62  E-value=0.0012  Score=50.70  Aligned_cols=23  Identities=35%  Similarity=0.524  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+-.
T Consensus         5 ki~v~G~~~~GKssli~~l~~~~   27 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQGI   27 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            47999999999999999998753

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.62  E-value=0.0013  Score=51.25  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=22.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.-.++|+|+.|+|||||++.+.+-.
T Consensus         7 ~~~~i~v~G~~~~GKssl~~~l~~~~   32 (178)
T 2lkc_A            7 RPPVVTIMGHVDHGKTTLLDAIRHSK   32 (178)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence            45678999999999999999998753

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.61  E-value=0.0012  Score=51.32  Aligned_cols=23  Identities=39%  Similarity=0.404  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+-.
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~~~   31 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVTNK   31 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57999999999999999998754

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.61  E-value=0.0012  Score=54.18  Aligned_cols=25  Identities=36%  Similarity=0.542  Sum_probs=22.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +-++.|.|+.||||||+.+.|+..+
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            5678999999999999999998866

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.60  E-value=0.0011  Score=51.02  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+..
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~~   27 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVEDK   27 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            47999999999999999998754

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.59  E-value=0.001  Score=51.21  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .++|+|+.|+|||||++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVKG   26 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5899999999999999999874

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.59  E-value=0.00094  Score=51.76  Aligned_cols=23  Identities=39%  Similarity=0.554  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+..
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~~   28 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGKQ   28 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCccHHHHHHHHhcCC
Confidence            58999999999999999998754

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.58  E-value=0.0012  Score=51.43  Aligned_cols=24  Identities=29%  Similarity=0.505  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        10 ~~i~v~G~~~~GKssli~~l~~~~   33 (181)
T 2fn4_A           10 HKLVVVGGGGVGKSALTIQFIQSY   33 (181)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            358999999999999999998863

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.58  E-value=0.0012  Score=53.81  Aligned_cols=25  Identities=40%  Similarity=0.607  Sum_probs=22.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.+++|.|+.||||||+.+.|+..+
T Consensus         3 ~~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            3 AINIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4579999999999999999999875

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.57  E-value=0.0016  Score=53.62  Aligned_cols=28  Identities=39%  Similarity=0.510  Sum_probs=24.9

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -+|.+|.|.|+.||||||+++.|...+.
T Consensus         4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~   31 (213)
T 4edh_A            4 MTGLFVTLEGPEGAGKSTNRDYLAERLR   31 (213)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            3589999999999999999999998874

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.57  E-value=0.0017  Score=58.09  Aligned_cols=32  Identities=28%  Similarity=0.239  Sum_probs=26.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      .+..++|+|++|||||||++.|.....   +..+.
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~---~~~~~   65 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREY---MQGSR   65 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHH---TTTCC
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHH---HCCCE
Confidence            466789999999999999999998874   44444

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.57  E-value=0.0015  Score=52.50  Aligned_cols=25  Identities=28%  Similarity=0.375  Sum_probs=23.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..+.|.||+|+|||||++.|+....
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~   79 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELA   79 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHH
Confidence            6889999999999999999999873

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.55  E-value=0.0013  Score=53.59  Aligned_cols=23  Identities=35%  Similarity=0.423  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|.|+.||||||+++.|+..+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998765

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.54  E-value=0.0018  Score=53.69  Aligned_cols=27  Identities=37%  Similarity=0.523  Sum_probs=23.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.++.|.|+.||||||+.+.|+..+.
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l~   41 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNFC   41 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            456899999999999999999997663

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.54  E-value=0.0014  Score=50.30  Aligned_cols=23  Identities=30%  Similarity=0.384  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+-.
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~~   30 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVKGQ   30 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            57899999999999999998743

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.54  E-value=0.0014  Score=52.01  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+..
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~~   49 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRNE   49 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            57999999999999999999854

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.53  E-value=0.0019  Score=50.45  Aligned_cols=28  Identities=32%  Similarity=0.521  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..+..+.|.||.|+|||||++.++..+.
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~   68 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            3456789999999999999999998873

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.53  E-value=0.0015  Score=51.32  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.|.+..
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~~   28 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQNH   28 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            58999999999999999998754

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.52  E-value=0.0015  Score=56.11  Aligned_cols=23  Identities=43%  Similarity=0.645  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .++.|.|++||||||+.+.|+..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57899999999999999999874

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.52  E-value=0.0015  Score=51.70  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~~   31 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKDT   31 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCc
Confidence            358999999999999999999864

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.52  E-value=0.0015  Score=51.44  Aligned_cols=23  Identities=17%  Similarity=0.185  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        13 ki~v~G~~~~GKSsli~~l~~~~   35 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTDGK   35 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999999753

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=96.52  E-value=0.002  Score=56.30  Aligned_cols=33  Identities=27%  Similarity=0.339  Sum_probs=29.5

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      .+++..+.+ .|.-+.|+|+||+|||||+..|.+
T Consensus       134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            568888888 589999999999999999998887

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.52  E-value=0.0014  Score=54.68  Aligned_cols=28  Identities=25%  Similarity=0.343  Sum_probs=22.5

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+|.+|.|.|++||||||+++.|+..+.
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~   50 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQ   50 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4799999999999999999999998873

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.51  E-value=0.0011  Score=51.10  Aligned_cols=23  Identities=43%  Similarity=0.408  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|+.|+|||||++.+.+..
T Consensus         4 ki~ivG~~~~GKSsli~~l~~~~   26 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGGLQ   26 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHCC-
T ss_pred             EEEEECCCCCCHHHHHHHHHhcc
Confidence            47899999999999999997643

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.48  E-value=0.0017  Score=54.46  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=24.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +|.++.|.|++||||||+++.|...+.
T Consensus        26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~   52 (236)
T 3lv8_A           26 NAKFIVIEGLEGAGKSTAIQVVVETLQ   52 (236)
T ss_dssp             CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999999999999998874

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.48  E-value=0.0016  Score=51.44  Aligned_cols=24  Identities=21%  Similarity=0.230  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -++|+|+.|+|||||++.+.|...
T Consensus        16 ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           16 KIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhhcc
Confidence            578999999999999999998763

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.48  E-value=0.0016  Score=49.86  Aligned_cols=23  Identities=22%  Similarity=0.209  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+-.
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~~   24 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLGE   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            37899999999999999998653

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.48  E-value=0.0008  Score=51.79  Aligned_cols=23  Identities=43%  Similarity=0.403  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+..
T Consensus         4 ki~~vG~~~~GKSsli~~l~~~~   26 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGGVE   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCCC-
T ss_pred             EEEEECCCCCCHHHHHHHHcCcc
Confidence            47899999999999999997644

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=96.47  E-value=0.0034  Score=52.30  Aligned_cols=26  Identities=23%  Similarity=0.314  Sum_probs=20.2

Q ss_pred             CCeE-EEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHI-VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~Gei-vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|++ +.+.|+.|+||||++-.++..+
T Consensus         4 ~g~l~I~~~~kgGvGKTt~a~~la~~l   30 (228)
T 2r8r_A            4 RGRLKVFLGAAPGVGKTYAMLQAAHAQ   30 (228)
T ss_dssp             CCCEEEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHHHH
Confidence            4664 7788999999999966666555

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.46  E-value=0.0017  Score=50.81  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.|+|+|+.|+|||||++.+.+..
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~~   42 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYDE   42 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhhCC
Confidence            358999999999999999998754

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.45  E-value=0.0023  Score=49.29  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=21.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .-.++|+|+.|+|||||++.+.+-.
T Consensus         7 ~~~i~v~G~~~~GKssl~~~l~~~~   31 (171)
T 1upt_A            7 EMRILILGLDGAGKTTILYRLQVGE   31 (171)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            4568999999999999999997743

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.45  E-value=0.0011  Score=52.48  Aligned_cols=24  Identities=29%  Similarity=0.490  Sum_probs=21.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .-.++|+|+.|+|||||++.|.+.
T Consensus        23 ~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           23 LPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            457899999999999999999875

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=96.45  E-value=0.00084  Score=53.10  Aligned_cols=24  Identities=29%  Similarity=0.344  Sum_probs=21.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .-.++|+|++|+|||||++.+.+.
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            456899999999999999998865

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.45  E-value=0.0017  Score=50.32  Aligned_cols=24  Identities=25%  Similarity=0.289  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        16 ~~i~v~G~~~~GKSsli~~l~~~~   39 (179)
T 1z0f_A           16 FKYIIIGDMGVGKSCLLHQFTEKK   39 (179)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            358999999999999999998864

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.44  E-value=0.0017  Score=51.25  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++++|+.|+|||||++.|.+-.
T Consensus        23 ki~vvG~~~~GKSsli~~l~~~~   45 (190)
T 3con_A           23 KLVVVGAGGVGKSALTIQLIQNH   45 (190)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            68999999999999999998764

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.44  E-value=0.0018  Score=50.51  Aligned_cols=23  Identities=30%  Similarity=0.368  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|+.|+|||||++.+.+..
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~~   34 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDGA   34 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999998854

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.44  E-value=0.0018  Score=51.44  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .++|+|++|+|||||++.+.+-
T Consensus        22 ki~ivG~~~vGKSsL~~~~~~~   43 (184)
T 3ihw_A           22 KVGIVGNLSSGKSALVHRYLTG   43 (184)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999877664

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.43  E-value=0.0012  Score=52.13  Aligned_cols=24  Identities=29%  Similarity=0.408  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~~   47 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNRK   47 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCc
Confidence            468999999999999999998864

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.43  E-value=0.0016  Score=50.52  Aligned_cols=23  Identities=17%  Similarity=0.268  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        16 ~i~v~G~~~~GKssli~~l~~~~   38 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMYDS   38 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.42  E-value=0.001  Score=51.72  Aligned_cols=23  Identities=26%  Similarity=0.369  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+..
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~~~   33 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFADNT   33 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999987643

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.41  E-value=0.0018  Score=53.04  Aligned_cols=24  Identities=42%  Similarity=0.707  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++.|+||.||||+|.++.|+..+.
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~g   25 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEKG   25 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            578999999999999999998764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.41  E-value=0.0016  Score=50.58  Aligned_cols=23  Identities=17%  Similarity=0.302  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~~   30 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQET   30 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhCc
Confidence            58999999999999999998753

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.40  E-value=0.0021  Score=53.48  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|.+++|.|+.||||||+++.|+..+
T Consensus         1 ~~~~i~~~G~~g~GKtt~~~~l~~~l   26 (241)
T 2ocp_A            1 GPRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHc
Confidence            36789999999999999999999877

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.40  E-value=0.0017  Score=58.91  Aligned_cols=30  Identities=33%  Similarity=0.313  Sum_probs=25.2

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.-..+.++.|+|++||||||+.+.|+..+
T Consensus       253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            334457899999999999999999987655

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.40  E-value=0.0021  Score=52.94  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=24.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +|.+|.|.|+.||||||+++.|...+.
T Consensus         2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~   28 (213)
T 4tmk_A            2 RSKYIVIEGLEGAGKTTARNVVVETLE   28 (213)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            488999999999999999999998874

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.39  E-value=0.002  Score=50.26  Aligned_cols=23  Identities=39%  Similarity=0.481  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+..
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~~   36 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKDQ   36 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999998764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.39  E-value=0.0017  Score=58.00  Aligned_cols=23  Identities=43%  Similarity=0.631  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|++|+|||||++.|++..
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37999999999999999999974

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.37  E-value=0.002  Score=51.43  Aligned_cols=24  Identities=33%  Similarity=0.451  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      --|+|+|+.|+|||||++.+.+-.
T Consensus        15 ~ki~v~G~~~~GKSsli~~l~~~~   38 (206)
T 2bov_A           15 HKVIMVGSGGVGKSALTLQFMYDE   38 (206)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHHhCC
Confidence            358999999999999999998754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.37  E-value=0.002  Score=52.25  Aligned_cols=24  Identities=25%  Similarity=0.408  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.|.+..
T Consensus        13 ~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           13 PSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999999865

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=96.37  E-value=0.0078  Score=53.73  Aligned_cols=26  Identities=38%  Similarity=0.505  Sum_probs=23.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+.-+.|.||+|+|||+|++.|+...
T Consensus       147 ~~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          147 PARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             CCSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHhh
Confidence            35689999999999999999999876

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.37  E-value=0.002  Score=51.49  Aligned_cols=24  Identities=29%  Similarity=0.421  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+..
T Consensus         9 ~ki~v~G~~~~GKSsli~~l~~~~   32 (207)
T 1vg8_A            9 LKVIILGDSGVGKTSLMNQYVNKK   32 (207)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHHcCC
Confidence            368999999999999999998864

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.37  E-value=0.0013  Score=51.80  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|+.|+|||||++.+.+..
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~~   25 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGKK   25 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCcC
Confidence            47899999999999999998754

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.36  E-value=0.0019  Score=50.73  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      --++|+|+.|+|||||++.+.+-.
T Consensus        11 ~ki~v~G~~~~GKSsli~~l~~~~   34 (186)
T 2bme_A           11 FKFLVIGNAGTGKSCLLHQFIEKK   34 (186)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            358999999999999999998754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=96.36  E-value=0.0017  Score=56.31  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|.+|+|||||++.|.|.-
T Consensus         9 ~V~ivG~~nvGKSTLln~l~g~~   31 (301)
T 1wf3_A            9 FVAIVGKPNVGKSTLLNNLLGVK   31 (301)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999999864

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.36  E-value=0.0028  Score=52.73  Aligned_cols=28  Identities=18%  Similarity=0.293  Sum_probs=25.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+|.+|.|.|+.||||||+++.|...+.
T Consensus        19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~   46 (223)
T 3ld9_A           19 PGSMFITFEGIDGSGKTTQSHLLAEYLS   46 (223)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4689999999999999999999998873

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.35  E-value=0.0021  Score=50.86  Aligned_cols=23  Identities=17%  Similarity=0.196  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+..
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~~   46 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADDS   46 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998864

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.35  E-value=0.002  Score=52.34  Aligned_cols=26  Identities=31%  Similarity=0.484  Sum_probs=22.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .-.+++|+|+.|+|||||++.|++..
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34589999999999999999998875

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.35  E-value=0.0011  Score=57.74  Aligned_cols=34  Identities=21%  Similarity=0.461  Sum_probs=26.0

Q ss_pred             cceeeeeCCC--eEEEEECCCCCcHHHHHHHHHHhh
Q 025366           98 SALASNVNVK--HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        98 ~~vsl~i~~G--eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.+.-.+..|  ..+.|.||+|+||||+++.+++.+
T Consensus        47 ~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l   82 (353)
T 1sxj_D           47 TVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   82 (353)
T ss_dssp             HHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            3343334444  348999999999999999999986

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.34  E-value=0.0019  Score=50.90  Aligned_cols=23  Identities=17%  Similarity=0.276  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~~   31 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKDC   31 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57899999999999999998853

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.34  E-value=0.0021  Score=50.81  Aligned_cols=23  Identities=30%  Similarity=0.349  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|+.|+|||||++.+.+..
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~~   40 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADDT   40 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            58999999999999999999854

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.34  E-value=0.0022  Score=50.26  Aligned_cols=24  Identities=29%  Similarity=0.468  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        19 ~ki~v~G~~~~GKSsl~~~l~~~~   42 (183)
T 3kkq_A           19 YKLVVVGDGGVGKSALTIQFFQKI   42 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            357999999999999999998753

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=96.32  E-value=0.0023  Score=57.04  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=21.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      +..++|+|.+|+|||||++.|++-
T Consensus         2 ~~kI~IVG~pnvGKSTL~n~Lt~~   25 (363)
T 1jal_A            2 GFKCGIVGLPNVGKSTLFNALTKA   25 (363)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCC
Confidence            346899999999999999999994

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.32  E-value=0.0023  Score=50.06  Aligned_cols=23  Identities=17%  Similarity=0.185  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|+.|+|||||++.+.+-.
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~~~   29 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTTNA   29 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998643

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=96.32  E-value=0.0018  Score=56.17  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=21.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -+|+|+|..|+|||||++.|.|.-
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~~   34 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGTK   34 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            478999999999999999999864

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.31  E-value=0.0021  Score=51.16  Aligned_cols=23  Identities=35%  Similarity=0.502  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+..
T Consensus        25 ki~vvG~~~~GKSsli~~l~~~~   47 (192)
T 2fg5_A           25 KVCLLGDTGVGKSSIVCRFVQDH   47 (192)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998864

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.31  E-value=0.0021  Score=51.03  Aligned_cols=24  Identities=33%  Similarity=0.396  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      --++|+|+.|+|||||++.+.+-.
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~~~   32 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVKGT   32 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCcHHHHHHHHHcCC
Confidence            468999999999999999998843

>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20

Probab=96.30  E-value=0.006  Score=60.26  Aligned_cols=25  Identities=28%  Similarity=0.430  Sum_probs=22.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..+.|.||+|+|||++++.|+..+.
T Consensus       589 ~~vLl~Gp~GtGKT~lA~~la~~~~  613 (854)
T 1qvr_A          589 GSFLFLGPTGVGKTELAKTLAATLF  613 (854)
T ss_dssp             EEEEEBSCSSSSHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            4789999999999999999999883

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.30  E-value=0.0027  Score=52.53  Aligned_cols=28  Identities=14%  Similarity=0.296  Sum_probs=25.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+|.++.+.|+.||||||+++.|...+.
T Consensus         3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~   30 (216)
T 3tmk_A            3 GRGKLILIEGLDRTGKTTQCNILYKKLQ   30 (216)
T ss_dssp             CCCCEEEEEECSSSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3689999999999999999999999884

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.30  E-value=0.0023  Score=51.19  Aligned_cols=23  Identities=43%  Similarity=0.384  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|.+|+|||||++.+.|..
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~~~   30 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAGVH   30 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCc
Confidence            58999999999999999999753

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.30  E-value=0.003  Score=52.65  Aligned_cols=28  Identities=39%  Similarity=0.557  Sum_probs=24.0

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ....-+.|.||+|+|||||++.|+..+.
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~~   64 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEAQ   64 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4455688999999999999999999873

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.30  E-value=0.002  Score=55.99  Aligned_cols=27  Identities=19%  Similarity=0.252  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+..+.|.||+|+|||||++.|+..+.
T Consensus        36 ~~~~lll~G~~GtGKT~la~~i~~~~~   62 (324)
T 1l8q_A           36 LYNPIFIYGSVGTGKTHLLQAAGNEAK   62 (324)
T ss_dssp             SCSSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            356789999999999999999999873

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.28  E-value=0.0035  Score=50.13  Aligned_cols=33  Identities=24%  Similarity=0.211  Sum_probs=26.5

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      .++..-+.+. |.-+.|.|++|+|||||+..|..
T Consensus         6 ~lHas~v~v~-G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A            6 TWHANFLVID-KMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EEESEEEEET-TEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EEEEEEEEEC-CEEEEEEcCCCCCHHHHHHHHHH
Confidence            3466666665 88999999999999999887765

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.27  E-value=0.0028  Score=51.30  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=22.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..+.|.||+|+|||||++.++..+.
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~   70 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLN   70 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3899999999999999999998773

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.27  E-value=0.0025  Score=50.37  Aligned_cols=24  Identities=17%  Similarity=0.195  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~~~   44 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCAGR   44 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCCHHHHHHHHHcCC
Confidence            358999999999999999998753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=96.26  E-value=0.0019  Score=54.64  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|..|||||||++.|.|..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999974

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.26  E-value=0.0025  Score=49.81  Aligned_cols=27  Identities=30%  Similarity=0.449  Sum_probs=23.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+..+.|.||.|+|||||++.++..+.
T Consensus        42 ~~~~vll~G~~G~GKT~la~~~~~~~~   68 (187)
T 2p65_A           42 TKNNPILLGDPGVGKTAIVEGLAIKIV   68 (187)
T ss_dssp             SSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHHHH
Confidence            356788999999999999999998873

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.25  E-value=0.0026  Score=50.50  Aligned_cols=23  Identities=26%  Similarity=0.319  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        23 ki~v~G~~~~GKSsli~~l~~~~   45 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTDKR   45 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.25  E-value=0.0023  Score=49.98  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .++|+|+.|+|||||++.+.+-
T Consensus         8 ki~~~G~~~~GKSsli~~l~~~   29 (181)
T 3t5g_A            8 KIAILGYRSVGKSSLTIQFVEG   29 (181)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5889999999999999999854

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.24  E-value=0.0023  Score=51.28  Aligned_cols=25  Identities=28%  Similarity=0.256  Sum_probs=22.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .-.++|+|+.|+|||||++.+.+-.
T Consensus        24 ~~ki~vvG~~~~GKSsli~~l~~~~   48 (201)
T 3oes_A           24 YRKVVILGYRCVGKTSLAHQFVEGE   48 (201)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCC
Confidence            3468999999999999999999864

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.24  E-value=0.0023  Score=50.72  Aligned_cols=23  Identities=13%  Similarity=0.196  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .|+|+|+.|+|||||++.+.+..
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            57899999999999999999865

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.22  E-value=0.0024  Score=51.64  Aligned_cols=23  Identities=26%  Similarity=0.460  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|++|+|||||++.+.+-.
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~~   50 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQGL   50 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECcCCCCHHHHHHHHHhCC
Confidence            58999999999999999988754

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.22  E-value=0.0027  Score=50.53  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=21.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .--++|+|+.|+|||||++.+.+-.
T Consensus        28 ~~ki~v~G~~~vGKSsli~~l~~~~   52 (196)
T 2atv_A           28 EVKLAIFGRAGVGKSALVVRFLTKR   52 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            3468999999999999999998853

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.21  E-value=0.0028  Score=50.23  Aligned_cols=24  Identities=21%  Similarity=0.221  Sum_probs=21.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~~   46 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASGQ   46 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHcCC
Confidence            458999999999999999998754

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=96.20  E-value=0.0028  Score=50.34  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~~   47 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKGE   47 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcCC
Confidence            368999999999999999998864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.20  E-value=0.0028  Score=49.97  Aligned_cols=24  Identities=25%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+..
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~~   39 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDDT   39 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCC
Confidence            368999999999999999998864

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=96.19  E-value=0.0023  Score=54.19  Aligned_cols=23  Identities=35%  Similarity=0.472  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|.+|+|||||++.|+|..
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~~   29 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGTK   29 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999854

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.19  E-value=0.0022  Score=53.75  Aligned_cols=25  Identities=28%  Similarity=0.469  Sum_probs=21.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .-.|+|+|+.|+|||||++.|.|..
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999998754

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.19  E-value=0.0012  Score=55.59  Aligned_cols=33  Identities=36%  Similarity=0.586  Sum_probs=25.5

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+..+....|  +.|.||+|+|||||++.|+....
T Consensus        37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             HHCCCCCCce--EEEECCCCCcHHHHHHHHHHHhC
Confidence            3344444445  77999999999999999999764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.17  E-value=0.0026  Score=50.99  Aligned_cols=23  Identities=30%  Similarity=0.330  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDDT   32 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998854

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.16  E-value=0.003  Score=50.74  Aligned_cols=25  Identities=32%  Similarity=0.344  Sum_probs=21.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .--|+|+|+.|+|||||++.+.+-.
T Consensus        20 ~~~i~v~G~~~~GKSsli~~l~~~~   44 (213)
T 3cph_A           20 IMKILLIGDSGVGKSCLLVRFVEDK   44 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCC
Confidence            4578999999999999999998754

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.16  E-value=0.0022  Score=50.18  Aligned_cols=24  Identities=25%  Similarity=0.274  Sum_probs=20.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      +.-.++|+|++|+|||||++.+.+
T Consensus        17 ~~~~i~v~G~~~~GKssli~~l~~   40 (183)
T 1moz_A           17 KELRILILGLDGAGKTTILYRLQI   40 (183)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhc
Confidence            456799999999999999998874

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=96.16  E-value=0.0038  Score=48.61  Aligned_cols=24  Identities=17%  Similarity=0.106  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus         9 ~ki~v~G~~~~GKssl~~~~~~~~   32 (182)
T 3bwd_D            9 IKCVTVGDGAVGKTCLLISYTSNT   32 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            468999999999999999998753

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.16  E-value=0.0025  Score=50.95  Aligned_cols=23  Identities=13%  Similarity=0.197  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~~   32 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADDS   32 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998754

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=96.14  E-value=0.0021  Score=50.53  Aligned_cols=26  Identities=19%  Similarity=0.130  Sum_probs=22.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.-.++|+|+.|+|||||++.+.+-.
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~~   42 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGED   42 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence            44578999999999999999988643

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=96.14  E-value=0.0023  Score=49.88  Aligned_cols=24  Identities=25%  Similarity=0.365  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus         8 ~ki~~vG~~~vGKTsli~~l~~~~   31 (178)
T 2iwr_A            8 LRLGVLGDARSGKSSLIHRFLTGS   31 (178)
T ss_dssp             EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            358999999999999999998853

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.13  E-value=0.0017  Score=54.89  Aligned_cols=27  Identities=22%  Similarity=0.238  Sum_probs=23.9

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++.+|+|.|+.||||||+++.|+..+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            467899999999999999999998776

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.12  E-value=0.0026  Score=51.30  Aligned_cols=34  Identities=15%  Similarity=0.160  Sum_probs=24.4

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++.|.-...-.|+|+|+.|+|||||++.+.+-.
T Consensus        16 ~~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~   49 (207)
T 2fv8_A           16 ENLYFQSMIRKKLVVVGDGACGKTCLLIVFSKDE   49 (207)
T ss_dssp             ---CGGGSEEEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred             cccccccccCcEEEEECcCCCCHHHHHHHHhcCC
Confidence            3444443334578999999999999999998853

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=96.12  E-value=0.0034  Score=49.80  Aligned_cols=24  Identities=29%  Similarity=0.465  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.|+|+|+.|+|||||++.+.+-.
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~~   45 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTKR   45 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhCC
Confidence            368999999999999999888753

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=96.11  E-value=0.0015  Score=52.44  Aligned_cols=24  Identities=42%  Similarity=0.390  Sum_probs=20.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|++|+|||||++.+++..
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~~~~   47 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFGGLQ   47 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTCCEE
T ss_pred             EEEEEECCCCCCHHHHHHHHHhcc
Confidence            368999999999999999987643

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.09  E-value=0.0043  Score=50.75  Aligned_cols=26  Identities=35%  Similarity=0.667  Sum_probs=23.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      |.+|+|-|+-||||||+++.|+..+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            56899999999999999999998873

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=96.09  E-value=0.003  Score=51.14  Aligned_cols=23  Identities=17%  Similarity=0.276  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|+.|+|||||++.+.+..
T Consensus        30 ki~vvG~~~vGKSsLi~~l~~~~   52 (205)
T 1gwn_A           30 KIVVVGDSQCGKTALLHVFAKDC   52 (205)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999999864

>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*

Probab=96.09  E-value=0.0033  Score=54.70  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=25.4

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -+++|+++.|.|++|+|||||+..++..
T Consensus        94 Gl~~g~i~~i~G~~gsGKT~la~~la~~  121 (322)
T 2i1q_A           94 GLESQSVTEFAGVFGSGKTQIMHQSCVN  121 (322)
T ss_dssp             SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999999888864

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.09  E-value=0.0041  Score=49.64  Aligned_cols=26  Identities=23%  Similarity=0.293  Sum_probs=21.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.--++|+|+.|+|||||++.+.+-.
T Consensus        27 ~~~ki~v~G~~~~GKSsli~~l~~~~   52 (199)
T 2p5s_A           27 KAYKIVLAGDAAVGKSSFLMRLCKNE   52 (199)
T ss_dssp             -CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred             CCeEEEEECcCCCCHHHHHHHHHhCC
Confidence            34578999999999999999998754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=96.08  E-value=0.0027  Score=54.12  Aligned_cols=24  Identities=33%  Similarity=0.560  Sum_probs=21.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|..|||||||++.|+|..
T Consensus         4 ~~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            4 LTIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999864

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.06  E-value=0.0027  Score=50.12  Aligned_cols=25  Identities=28%  Similarity=0.327  Sum_probs=21.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      +.-.++|+|+.|+|||||++.+.+-
T Consensus        15 ~~~~i~v~G~~~~GKssl~~~l~~~   39 (187)
T 1zj6_A           15 QEHKVIIVGLDNAGKTTILYQFSMN   39 (187)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcC
Confidence            3457899999999999999999854

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.05  E-value=0.0019  Score=54.93  Aligned_cols=23  Identities=30%  Similarity=0.361  Sum_probs=20.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|.+|+|||||++.|.+.-
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~~~   32 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFLTD   32 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSSSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            48999999999999999987643

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=96.05  E-value=0.0036  Score=50.46  Aligned_cols=24  Identities=21%  Similarity=0.224  Sum_probs=21.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus         8 ~ki~vvG~~~~GKTsli~~l~~~~   31 (214)
T 2fh5_B            8 RAVLFVGLCDSGKTLLFVRLLTGQ   31 (214)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999998754

>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11

Probab=96.04  E-value=0.0039  Score=57.37  Aligned_cols=36  Identities=28%  Similarity=0.393  Sum_probs=29.6

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++.+ +.+-+|+.++|+|++|+|||||++.|+....
T Consensus       141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~  176 (473)
T 1sky_E          141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA  176 (473)
T ss_dssp             HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred             HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence            33444 5666899999999999999999999988763

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=96.03  E-value=0.0025  Score=51.13  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -++|+|+.|+|||||++.+.+.
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (200)
T 2o52_A           27 KFLVIGSAGTGKSCLLHQFIEN   48 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHC-
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5899999999999999998754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=96.00  E-value=0.0025  Score=50.10  Aligned_cols=23  Identities=30%  Similarity=0.359  Sum_probs=20.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~~   44 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSMN   44 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999999874

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=95.99  E-value=0.0039  Score=50.79  Aligned_cols=26  Identities=19%  Similarity=0.358  Sum_probs=22.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +-..++|+|..|+|||||++.++...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            34688999999999999999988765

>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}

Probab=95.98  E-value=0.024  Score=51.84  Aligned_cols=35  Identities=17%  Similarity=0.331  Sum_probs=28.4

Q ss_pred             ccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |+.+.--+.+|+++.|.|++|+|||||+--++...
T Consensus       187 LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~  221 (444)
T 3bgw_A          187 LDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM  221 (444)
T ss_dssp             HHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             HHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHH
Confidence            34444458899999999999999999987777655

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.98  E-value=0.0045  Score=50.98  Aligned_cols=26  Identities=35%  Similarity=0.477  Sum_probs=22.7

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHH
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVV  128 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~  128 (254)
                      -+++|+++.|.|++|+|||||+--++
T Consensus        26 Gl~~G~l~~i~G~pG~GKT~l~l~~~   51 (251)
T 2zts_A           26 GFPEGTTVLLTGGTGTGKTTFAAQFI   51 (251)
T ss_dssp             SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred             CCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence            37899999999999999999986554

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.98  E-value=0.0037  Score=50.11  Aligned_cols=23  Identities=17%  Similarity=0.221  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+-.
T Consensus        27 ki~vvG~~~~GKSsli~~l~~~~   49 (201)
T 2gco_A           27 KLVIVGDGACGKTCLLIVFSKDQ   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHHhCc
Confidence            58999999999999999999854

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.97  E-value=0.0029  Score=57.77  Aligned_cols=26  Identities=38%  Similarity=0.617  Sum_probs=23.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..+++|+|++|+||||++..|++.+.
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~  124 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQ  124 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46999999999999999999999873

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.96  E-value=0.0024  Score=50.88  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.+.+..
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~~~   50 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTDDT   50 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            57999999999999999987643

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.95  E-value=0.0032  Score=50.88  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .|+|+|+.|+|||||++.+.+..
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~~~   49 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTDNK   49 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHCSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            57999999999999999998653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.94  E-value=0.004  Score=49.31  Aligned_cols=23  Identities=17%  Similarity=0.186  Sum_probs=20.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        20 ki~v~G~~~~GKssli~~l~~~~   42 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYANDA   42 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhcCC
Confidence            58999999999999999998763

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.94  E-value=0.0029  Score=51.89  Aligned_cols=25  Identities=36%  Similarity=0.500  Sum_probs=21.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .-.|+|+|+.|+|||||++.+.+..
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~~   53 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRAN   53 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999998753

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.93  E-value=0.0034  Score=54.10  Aligned_cols=24  Identities=25%  Similarity=0.396  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|..|+|||||++.|.|.-
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCCC
Confidence            368999999999999999999864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.92  E-value=0.0024  Score=49.98  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=9.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|+.|+|||||++.+.+-.
T Consensus         9 ~ki~v~G~~~~GKssl~~~l~~~~   32 (183)
T 2fu5_C            9 FKLLLIGDSGVGKTCVLFRFSEDA   32 (183)
T ss_dssp             EEEEEECCCCC-------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCC
Confidence            358999999999999999988653

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.91  E-value=0.0027  Score=50.37  Aligned_cols=25  Identities=28%  Similarity=0.314  Sum_probs=21.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .-.|+|+|+.|+|||||++.+.+-.
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~~   41 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPAQ   41 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCC
Confidence            4468999999999999999988754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.91  E-value=0.002  Score=51.04  Aligned_cols=25  Identities=20%  Similarity=0.153  Sum_probs=21.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .-.++|+|+.|+|||||++.+.+..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468999999999999999998765

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.91  E-value=0.0015  Score=53.15  Aligned_cols=25  Identities=28%  Similarity=0.353  Sum_probs=21.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .-.|+|+|+.|+|||||++.|.+..
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            4478999999999999999998863

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.88  E-value=0.0036  Score=49.91  Aligned_cols=24  Identities=21%  Similarity=0.234  Sum_probs=20.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            446899999999999999998754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.86  E-value=0.0055  Score=52.71  Aligned_cols=29  Identities=34%  Similarity=0.540  Sum_probs=24.4

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++....+.|.||+|+|||+|++.|+..+.
T Consensus        33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~   61 (293)
T 3t15_A           33 IKVPLILGIWGGKGQGKSFQCELVFRKMG   61 (293)
T ss_dssp             CCCCSEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34456788889999999999999999873

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.84  E-value=0.0034  Score=50.93  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=19.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~~   57 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFADG   57 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC-
T ss_pred             EEEEEECcCCCCHHHHHHHHHcC
Confidence            35899999999999999999864

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.84  E-value=0.0047  Score=49.61  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|+.|+|||||++.+.+-.
T Consensus        31 ki~vvG~~~vGKSsli~~l~~~~   53 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKTGA   53 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhhCC
Confidence            58999999999999999998754

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.84  E-value=0.0064  Score=53.78  Aligned_cols=27  Identities=37%  Similarity=0.576  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ....+++|+|+.|+|||||++.|++.+
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l  103 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHL  103 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence            345689999999999999999999887

>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A

Probab=95.83  E-value=0.0055  Score=54.46  Aligned_cols=28  Identities=32%  Similarity=0.570  Sum_probs=25.4

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +++|+++.|.|++|+|||||+..++...
T Consensus        60 l~~G~ii~I~G~pGsGKTtLal~la~~~   87 (356)
T 1u94_A           60 LPMGRIVEIYGPESSGKTTLTLQVIAAA   87 (356)
T ss_dssp             EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            7799999999999999999998887665

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.82  E-value=0.0036  Score=49.92  Aligned_cols=24  Identities=25%  Similarity=0.350  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      --++|+|..|+|||||++.+.+..
T Consensus        21 ~ki~~vG~~~vGKTsLi~~l~~~~   44 (196)
T 3llu_A           21 PRILLMGLRRSGKSSIQKVVFHKM   44 (196)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhcC
Confidence            368999999999999999888754

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.81  E-value=0.0054  Score=50.00  Aligned_cols=23  Identities=30%  Similarity=0.452  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -|+|+|+.|+|||||++.+.+..
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~~   37 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKNE   37 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            58999999999999999998854

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.79  E-value=0.0059  Score=46.65  Aligned_cols=27  Identities=30%  Similarity=0.249  Sum_probs=23.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ..+.-+.|.||+|+|||++++.|....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            345668999999999999999999876

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.77  E-value=0.0064  Score=52.05  Aligned_cols=27  Identities=26%  Similarity=0.492  Sum_probs=23.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+..+.|.||+|+|||||++.++..+.
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~   92 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLH   92 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence            456789999999999999999998873

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.74  E-value=0.0053  Score=49.40  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=20.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~~   53 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHHhC
Confidence            346899999999999999998864

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=95.72  E-value=0.0046  Score=50.65  Aligned_cols=22  Identities=45%  Similarity=0.434  Sum_probs=20.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .|+|+|.+|+|||||++.+.|.
T Consensus        39 kVvlvG~~~vGKSSLl~r~~~~   60 (211)
T 2g3y_A           39 RVVLIGEQGVGKSTLANIFAGV   60 (211)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5899999999999999999864

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.71  E-value=0.0061  Score=49.51  Aligned_cols=25  Identities=16%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .--++|+|+.|+|||||++.+.+-.
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~~   51 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKDC   51 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCC
Confidence            3468899999999999999998753

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.70  E-value=0.0049  Score=51.97  Aligned_cols=24  Identities=25%  Similarity=0.326  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|..|+|||||++.|.|..
T Consensus        37 ~~I~lvG~~g~GKSSLin~l~~~~   60 (262)
T 3def_A           37 MTVLVLGKGGVGKSSTVNSLIGEQ   60 (262)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            468999999999999999999854

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=95.70  E-value=0.0041  Score=53.03  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|..|+|||||++.|.|..
T Consensus        27 ~~i~vvG~~~~GKSSLln~l~g~~   50 (299)
T 2aka_B           27 PQIAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred             CeEEEEeCCCCCHHHHHHHHHCCC
Confidence            478999999999999999999864

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.69  E-value=0.0066  Score=48.50  Aligned_cols=23  Identities=35%  Similarity=0.704  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+.|.||.|+|||||++.++..+
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHH
Confidence            48999999999999999999875

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.69  E-value=0.0075  Score=52.59  Aligned_cols=27  Identities=41%  Similarity=0.491  Sum_probs=23.9

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++.-+.|.||.|+|||||++.++...
T Consensus        43 ~~~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           43 TPWRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHHc
Confidence            445778999999999999999999876

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.69  E-value=0.0066  Score=50.65  Aligned_cols=25  Identities=36%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -.+||+|+.||||||+.+.|+..+.
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~g   33 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKFG   33 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             cceeeECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999988763

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.64  E-value=0.0061  Score=49.04  Aligned_cols=24  Identities=13%  Similarity=0.025  Sum_probs=20.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      --++|+|+.|+|||||++.+.+-.
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~~~   33 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTSNK   33 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred             EEEEEECCCCCCHHHHHHHHhcCC
Confidence            358999999999999999998753

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=95.64  E-value=0.0024  Score=50.99  Aligned_cols=23  Identities=26%  Similarity=0.368  Sum_probs=4.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -.++|+|+.|+|||||++.+.+.
T Consensus        21 ~~i~v~G~~~~GKssli~~l~~~   43 (208)
T 2yc2_C           21 CKVAVVGEATVGKSALISMFTSK   43 (208)
T ss_dssp             EEEEEC-----------------
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            46899999999999999998876

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.63  E-value=0.0072  Score=48.41  Aligned_cols=26  Identities=23%  Similarity=0.162  Sum_probs=21.0

Q ss_pred             CCeEEEEECCCCCcHHHHH-HHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLA-AEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLl-k~L~Gll  131 (254)
                      +|.++.+.||.|+||||++ +++....
T Consensus         2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~   28 (184)
T 2orw_A            2 SGKLTVITGPMYSGKTTELLSFVEIYK   28 (184)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccEEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4789999999999999997 5554443

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.63  E-value=0.0049  Score=52.18  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=21.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++++|+.|+|||||++.|.|..
T Consensus        40 ~~I~vvG~~g~GKSSLin~l~~~~   63 (270)
T 1h65_A           40 LTILVMGKGGVGKSSTVNSIIGER   63 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             eEEEEECCCCCCHHHHHHHHhCCC
Confidence            368999999999999999999754

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=95.56  E-value=0.0059  Score=51.86  Aligned_cols=24  Identities=29%  Similarity=0.403  Sum_probs=22.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ..++++|.+|+|||||++.|.|..
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~  123 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKR  123 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTC
T ss_pred             hheEEeCCCCCCHHHHHHHHhccc
Confidence            578999999999999999999865

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=95.50  E-value=0.0023  Score=51.82  Aligned_cols=22  Identities=32%  Similarity=0.459  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .++|+|+.|+|||||++.+.+.
T Consensus        13 ki~vvG~~~~GKSsli~~l~~~   34 (218)
T 4djt_A           13 KICLIGDGGVGKTTYINRVLDG   34 (218)
T ss_dssp             EEEEECCTTSSHHHHHCBCTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5789999999999999988754

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.50  E-value=0.0079  Score=49.44  Aligned_cols=29  Identities=24%  Similarity=0.399  Sum_probs=25.2

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++...+.|.||.|+||||++..|+..+.
T Consensus        55 iPkkn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           55 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            55556799999999999999999999873

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.49  E-value=0.0082  Score=55.89  Aligned_cols=28  Identities=7%  Similarity=0.084  Sum_probs=25.8

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.|.++.|+|.+||||||+.+.|+..+.
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~  420 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFL  420 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHH
Confidence            5688999999999999999999999984

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=95.49  E-value=0.008  Score=53.08  Aligned_cols=27  Identities=37%  Similarity=0.575  Sum_probs=23.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++.-+.|.||+|+||||+++.|+..+.
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~~   76 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLLD   76 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            356789999999999999999999873

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.46  E-value=0.0025  Score=58.37  Aligned_cols=30  Identities=43%  Similarity=0.676  Sum_probs=24.7

Q ss_pred             eeCCCe--EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          103 NVNVKH--IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       103 ~i~~Ge--ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+..|.  .+.|.||+|+|||||++.|+....
T Consensus        44 ~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~   75 (447)
T 3pvs_A           44 AIEAGHLHSMILWGPPGTGKTTLAEVIARYAN   75 (447)
T ss_dssp             HHHHTCCCEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             HHHcCCCcEEEEECCCCCcHHHHHHHHHHHhC
Confidence            344444  488999999999999999999874

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=95.46  E-value=0.0099  Score=56.16  Aligned_cols=27  Identities=19%  Similarity=0.233  Sum_probs=24.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.|.+|.|.|.+||||||+.+.|...+
T Consensus       394 q~~~~I~l~GlsGSGKSTiA~~La~~L  420 (573)
T 1m8p_A          394 TQGFTIFLTGYMNSGKDAIARALQVTL  420 (573)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence            357899999999999999999999876

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.45  E-value=0.0089  Score=50.89  Aligned_cols=26  Identities=27%  Similarity=0.520  Sum_probs=23.1

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.-+.|.||+|+||||+++.|+..+.
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~l~   75 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKLAN   75 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHhC
Confidence            45678999999999999999999874

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=95.45  E-value=0.0091  Score=47.50  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      +.-.++|+|+.|+|||||++.+.+
T Consensus        28 ~~~ki~v~G~~~vGKSsLi~~l~~   51 (192)
T 2b6h_A           28 KQMRILMVGLDAAGKTTILYKLKL   51 (192)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHCS
T ss_pred             CccEEEEECCCCCCHHHHHHHHHh
Confidence            345689999999999999998864

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.43  E-value=0.0045  Score=56.68  Aligned_cols=24  Identities=29%  Similarity=0.527  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.|+|+|.+|+|||||++.|+|..
T Consensus        24 ~~V~lvG~~nvGKSTL~n~l~~~~   47 (456)
T 4dcu_A           24 PVVAIVGRPNVGKSTIFNRIAGER   47 (456)
T ss_dssp             CEEEEECSSSSSHHHHHHHHEEEE
T ss_pred             CEEEEECCCCCcHHHHHHHHhCCC
Confidence            378999999999999999998853

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.41  E-value=0.009  Score=52.43  Aligned_cols=28  Identities=29%  Similarity=0.510  Sum_probs=24.9

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+|..+.|.||+|+|||||++.++..+.
T Consensus        68 ~~~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           68 IAGRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             CTTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3467899999999999999999999883

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.40  E-value=0.01  Score=50.10  Aligned_cols=28  Identities=39%  Similarity=0.539  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .....+.|.||+|+|||||++.|+....
T Consensus        62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~   89 (272)
T 1d2n_A           62 TPLVSVLLEGPPHSGKTALAAKIAEESN   89 (272)
T ss_dssp             CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence            3456788999999999999999999763

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.37  E-value=0.011  Score=52.12  Aligned_cols=28  Identities=25%  Similarity=0.436  Sum_probs=24.3

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ....-+.|.||+|+|||||++.|+....
T Consensus       115 ~~~~~vLl~GppGtGKT~la~aia~~~~  142 (357)
T 3d8b_A          115 GPPKGILLFGPPGTGKTLIGKCIASQSG  142 (357)
T ss_dssp             SCCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHcC
Confidence            3466899999999999999999998763

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.36  E-value=0.011  Score=56.45  Aligned_cols=26  Identities=31%  Similarity=0.386  Sum_probs=24.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|.+|.|.|.+||||||+.+.|+..+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            57899999999999999999999877

>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*

Probab=95.30  E-value=0.0096  Score=52.25  Aligned_cols=28  Identities=18%  Similarity=0.232  Sum_probs=24.5

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .+.+|.++.|.||.|+|||||+..++..
T Consensus       119 Gi~~gsviLI~GpPGsGKTtLAlqlA~~  146 (331)
T 2vhj_A          119 HRYASGMVIVTGKGNSGKTPLVHALGEA  146 (331)
T ss_dssp             EEEESEEEEEECSCSSSHHHHHHHHHHH
T ss_pred             CCCCCcEEEEEcCCCCCHHHHHHHHHHh
Confidence            4667888999999999999999988764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.30  E-value=0.012  Score=51.01  Aligned_cols=27  Identities=44%  Similarity=0.567  Sum_probs=23.6

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +..-+.|.||+|+|||+|++.|+....
T Consensus        50 ~~~~vLl~GppGtGKT~la~aia~~~~   76 (322)
T 3eie_A           50 PTSGILLYGPPGTGKSYLAKAVATEAN   76 (322)
T ss_dssp             CCCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCcHHHHHHHHHHHHC
Confidence            456789999999999999999998863

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=95.29  E-value=0.0058  Score=48.15  Aligned_cols=24  Identities=25%  Similarity=0.194  Sum_probs=20.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      +.-.++|+|+.|+|||||++.+.+
T Consensus        21 ~~~~i~v~G~~~~GKssli~~l~~   44 (189)
T 2x77_A           21 RKIRVLMLGLDNAGKTSILYRLHL   44 (189)
T ss_dssp             SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHc
Confidence            345689999999999999998854

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.28  E-value=0.012  Score=53.61  Aligned_cols=30  Identities=33%  Similarity=0.527  Sum_probs=25.4

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.+..=+.|.||+|+|||+|++.|++...
T Consensus       202 g~~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          202 GIDPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             CCCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             CCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            345556688999999999999999999874

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.26  E-value=0.012  Score=51.74  Aligned_cols=26  Identities=27%  Similarity=0.351  Sum_probs=23.4

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+..+.|.||.|+|||||++.++..+
T Consensus        44 ~~~~vll~G~~G~GKT~la~~l~~~~   69 (384)
T 2qby_B           44 VKFSNLFLGLTGTGKTFVSKYIFNEI   69 (384)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence            35689999999999999999999876

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.013  Score=53.50  Aligned_cols=30  Identities=30%  Similarity=0.498  Sum_probs=25.9

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+++..=+.|.||+|+|||+|++.|++...
T Consensus       211 g~~~prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          211 GIRAPKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            455666788999999999999999999874

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.21  E-value=0.013  Score=53.55  Aligned_cols=30  Identities=40%  Similarity=0.566  Sum_probs=25.8

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.+..=+.|.||+|+|||+|++.|++...
T Consensus       211 g~~~prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          211 GIKPPKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             CCCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            455666788999999999999999999874

>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}

Probab=95.14  E-value=0.096  Score=56.00  Aligned_cols=28  Identities=32%  Similarity=0.570  Sum_probs=25.5

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +++|+++.|.||+|+|||||+..++...
T Consensus      1424 i~~g~~vll~GppGtGKT~LA~ala~ea 1451 (2050)
T 3cmu_A         1424 LPMGRIVEIYGPESSGKTTLTLQVIAAA 1451 (2050)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            8899999999999999999998887654

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=95.11  E-value=0.014  Score=54.18  Aligned_cols=28  Identities=18%  Similarity=0.377  Sum_probs=23.3

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+..+|+|+|++|+||||++..|+..+.
T Consensus        99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~  126 (504)
T 2j37_W           99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQ  126 (504)
T ss_dssp             S--EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567999999999999999999997763

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=95.10  E-value=0.008  Score=48.77  Aligned_cols=23  Identities=26%  Similarity=0.437  Sum_probs=19.9

Q ss_pred             EEEEECCCCCcHHHHHHH-HHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAE-VVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~-L~Gll  131 (254)
                      .++|+|+.|+|||||++. +.|..
T Consensus        17 ki~v~G~~~~GKSsli~~~~~~~~   40 (221)
T 3gj0_A           17 KLVLVGDGGTGKTTFVKRHLTGEF   40 (221)
T ss_dssp             EEEEEECTTSSHHHHHTTBHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC
Confidence            589999999999999998 66654

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=95.07  E-value=0.013  Score=51.76  Aligned_cols=27  Identities=44%  Similarity=0.567  Sum_probs=23.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +..-+.|.||.|+|||||++.|+..+.
T Consensus        83 ~~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           83 PTSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCcHHHHHHHHHHHhC
Confidence            345588999999999999999999873

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.07  E-value=0.016  Score=54.06  Aligned_cols=26  Identities=19%  Similarity=0.479  Sum_probs=23.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ...+|.++|.+||||||+.+.|+..+
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            45789999999999999999998766

>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}

Probab=95.06  E-value=0.036  Score=53.85  Aligned_cols=82  Identities=16%  Similarity=0.182  Sum_probs=0.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHH
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPL  189 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~  189 (254)
                      +.|.||+|+|||+|++.|+..+.               ...... +.++.-.+.......                    
T Consensus       524 ~Ll~Gp~GtGKT~lA~ala~~l~---------------~~~~~~-i~i~~s~~~~~~~~~--------------------  567 (758)
T 3pxi_A          524 FIFLGPTGVGKTELARALAESIF---------------GDEESM-IRIDMSEYMEKHSTS--------------------  567 (758)
T ss_dssp             EEEESCTTSSHHHHHHHHHHHHH---------------SCTTCE-EEEEGGGGCSSCCCC--------------------
T ss_pred             EEEECCCCCCHHHHHHHHHHHhc---------------CCCcce-EEEechhcccccccc--------------------


Q ss_pred             HHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          190 LLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       190 ~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                                               ........-.....+|++||. --+++.....+.+++++
T Consensus       568 -------------------------~~~l~~~~~~~~~~vl~lDEi-~~~~~~~~~~Ll~~le~  605 (758)
T 3pxi_A          568 -------------------------GGQLTEKVRRKPYSVVLLDAI-EKAHPDVFNILLQVLED  605 (758)
T ss_dssp             ----------------------------CHHHHHHCSSSEEEEECG-GGSCHHHHHHHHHHHHH
T ss_pred             -------------------------cchhhHHHHhCCCeEEEEeCc-cccCHHHHHHHHHHhcc

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.04  E-value=0.016  Score=50.24  Aligned_cols=25  Identities=32%  Similarity=0.365  Sum_probs=23.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.-+.|.||.|+|||+|++.|+..+
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~  176 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHEL  176 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHH
Confidence            6789999999999999999999876

>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*

Probab=95.02  E-value=0.013  Score=53.50  Aligned_cols=25  Identities=28%  Similarity=0.549  Sum_probs=22.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .-+.|.||+|+||||+++.|+..+.
T Consensus        51 ~~iLl~GppGtGKT~lar~lA~~l~   75 (444)
T 1g41_A           51 KNILMIGPTGVGKTEIARRLAKLAN   75 (444)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEEcCCCCCHHHHHHHHHHHcC
Confidence            3478999999999999999999984

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.02  E-value=0.014  Score=50.71  Aligned_cols=25  Identities=32%  Similarity=0.550  Sum_probs=22.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..+.|.||+|+|||||++.|+....
T Consensus        56 ~~vll~G~~GtGKT~la~~ia~~~~   80 (338)
T 3pfi_A           56 DHILFSGPAGLGKTTLANIISYEMS   80 (338)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECcCCCCHHHHHHHHHHHhC
Confidence            4588999999999999999998764

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.02  E-value=0.015  Score=47.21  Aligned_cols=26  Identities=19%  Similarity=0.355  Sum_probs=23.6

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .-+|+|.|+.||||||+.+.|+..+.
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            35899999999999999999999874

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=94.02  E-value=0.0041  Score=49.84  Aligned_cols=24  Identities=17%  Similarity=0.152  Sum_probs=20.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .-.++|+|+.|+|||||++.+.+-
T Consensus        30 ~~ki~v~G~~~~GKSsli~~l~~~   53 (204)
T 3th5_A           30 AIKCVVVGDGAVGKTCLLISYTTN   53 (204)
Confidence            346899999999999999888753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	254
d1sq5a_	308	c.37.1.6 (A:) Pantothenate kinase PanK {Escherichi	4e-17
d1a7ja_	288	c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sph	4e-14
d1odfa_	286	c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker'	9e-14
d1uj2a_	213	c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Ho	1e-10
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	8e-09
d2qm8a1	323	c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo	2e-05
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	4e-05
d1knqa_	171	c.37.1.17 (A:) Gluconate kinase {Escherichia coli	8e-05
d2bdta1	176	c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B	2e-04
d1ly1a_	152	c.37.1.1 (A:) Polynucleotide kinase, kinase domain	2e-04
d1qhxa_	178	c.37.1.3 (A:) Chloramphenicol phosphotransferase {	3e-04
d1w5sa2	287	c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t	4e-04
d1np6a_	170	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	6e-04
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	0.001
d1bifa1	213	c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fruct	0.001
d1nksa_	194	c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu	0.002
d1zp6a1	176	c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {	0.002
d1m8pa3	183	c.37.1.15 (A:391-573) ATP sulfurylase C-terminal d	0.002
d1xjca_	165	c.37.1.10 (A:) Molybdopterin-guanine dinucleotide	0.003
d1qf9a_	194	c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoi	0.003
d1kaga_	169	c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia	0.004
d2i3ba1	189	c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57	0.004
d1lw7a2	192	c.37.1.1 (A:220-411) Transcriptional regulator Nad	0.004
d1ckea_	225	c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId:	0.004
d1htwa_	158	c.37.1.18 (A:) Hypothetical protein HI0065 {Haemop	0.004
d1y63a_	174	c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma	0.004

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} Length = 308

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

 Score = 76.7 bits (188), Expect = 4e-17
 Identities = 30/153 (19%), Positives = 61/153 (39%), Gaps = 23/153 (15%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           I+ +AG    GKST A  +   +++             +   V  ++  DGF      L 
Sbjct: 82  IISIAGSVAVGKSTTARVLQALLSRW-----------PEHRRVE-LITTDGFLHPNQVLK 129

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-SVYAPSFDHGVGDPVEDDILVGLQH 227
                +    ++G P +++   L+  + +L++   +V AP + H + D + D     +Q 
Sbjct: 130 E----RGLMKKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQP 185

Query: 228 KVVIVDGNYLFLDGGVWKD------VSSMFDEK 254
            ++I++G  +   G  +        VS   D  
Sbjct: 186 DILILEGLNVLQSGMDYPHDPHHVFVSDFVDFS 218

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} Length = 288

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

 Score = 68.4 bits (167), Expect = 4e-14
 Identities = 24/164 (14%), Positives = 52/164 (31%), Gaps = 30/164 (18%)

Query: 106 VKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYL 164
            KH I+ + G  GAG ST+        ++I+ ++             A  +  D FH + 
Sbjct: 2   KKHPIISVTGSSGAGTSTVK----HTFDQIFRREGVK----------AVSIEGDAFHRFN 47

Query: 165 -SQLDAMEDPKEAHARRG----APWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVED 219
            + + A  D + A         +        L    +     G     ++ H   +    
Sbjct: 48  RADMKAELDRRYAAGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAART 107

Query: 220 DILVGLQ---------HKVVIVDGNYLFLDGGVWKDVSSMFDEK 254
            +  G             ++  +G +  +      +++ + D K
Sbjct: 108 GVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNS-EVNIAGLADLK 150

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 286

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.1 bits (163), Expect = 9e-14
 Identities = 28/166 (16%), Positives = 55/166 (33%), Gaps = 26/166 (15%)

Query: 82  CMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASS 141
            +D   + L + +       +       +  +GP G+GKS  + ++   + + +  + S 
Sbjct: 4   VLDYTIEFLDKYIPE--WFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKS- 60

Query: 142 FDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRGAPWTFNPLLLLNCLKNL 198
                          +D F+L       + +  + +     RG P T +  LL   L  +
Sbjct: 61  ----------IGYASIDDFYLTHEDQLKLNEQFKNNKLLQGRGLPGTHDMKLLQEVLNTI 110

Query: 199 RNQGS----------VYAPSFDHGVGDPVEDDILVGLQHKVVIVDG 234
            N              Y  S   G GD       + L   + I++G
Sbjct: 111 FNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEG 156

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 1e-10
 Identities = 28/135 (20%), Positives = 53/135 (39%), Gaps = 11/135 (8%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLD 168
           ++G++G   +GKS++ A++V+ + +                    +L  D F+  L+   
Sbjct: 4   LIGVSGGTASGKSSVCAKIVQLLGQNEVD---------YRQKQVVILSQDSFYRVLTSEQ 54

Query: 169 AMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHK 228
             +  K        P  F+  L+L  LK +    +V  P +D       E+ + V     
Sbjct: 55  KAKALKGQFN-FDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVY-PAD 112

Query: 229 VVIVDGNYLFLDGGV 243
           VV+ +G   F    V
Sbjct: 113 VVLFEGILAFYSQEV 127

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 52.1 bits (123), Expect = 8e-09
 Identities = 19/129 (14%), Positives = 43/129 (33%), Gaps = 21/129 (16%)

Query: 83  MDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
           + +  D L + +L     A     + ++G+ G   +GK+TLA ++ + + +         
Sbjct: 3   LRDRIDFLCKTIL-----AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV---- 53

Query: 143 DSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG 202
                      V  MD   +  ++     + +               L     + L+   
Sbjct: 54  ----------CVFHMDDHIVERAKRYHTGNEEWFEYYYLQWDVE--WLTHQLFRQLKASH 101

Query: 203 SVYAPSFDH 211
            +  P +DH
Sbjct: 102 QLTLPFYDH 110

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

 Score = 42.6 bits (99), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           R I + E+R     + A  + L+   A+         VG+ G PG GKST    +   + 
Sbjct: 21  RAITLAESR--RADHRAAVRDLI--DAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLT 76

Query: 133 KIWPQKASS 141
               + A  
Sbjct: 77  AAGHKVAVL 85

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 41.8 bits (97), Expect = 4e-05
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 4/63 (6%)

Query: 73  REIPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRIN 132
           + + +VE+R     + AL+ +LL   A+         +G+ G PGAGKST        + 
Sbjct: 24  QAMTLVESR--HPRHQALSTQLL--DAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLI 79

Query: 133 KIW 135
           +  
Sbjct: 80  REG 82

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

 Score = 40.0 bits (92), Expect = 8e-05
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           HI  L G  G+GKS +A+EV  +++  +
Sbjct: 7   HIYVLMGVSGSGKSAVASEVAHQLHAAF 34

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

 Score = 39.2 bits (90), Expect = 2e-04
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRIN 132
           K +  + GP G GKST    +  +++
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLD 27

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

 Score = 38.2 bits (87), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           K I+   G PG+GKST A E + +    +
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFY 30

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

 Score = 38.5 bits (88), Expect = 3e-04
 Identities = 12/88 (13%), Positives = 24/88 (27%), Gaps = 4/88 (4%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQ 166
             ++ L G   AGKS +   +   +    P+   +F        +   +      +    
Sbjct: 3   TRMIILNGGSSAGKSGIVRCLQSVL----PEPWLAFGVDSLIEAMPLKMQSAEGGIEFDA 58

Query: 167 LDAMEDPKEAHARRGAPWTFNPLLLLNC 194
              +    E  A  GA       +    
Sbjct: 59  DGGVSIGPEFRALEGAWAEGVVAMARAG 86

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

 Score = 38.6 bits (88), Expect = 4e-04
 Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 2/100 (2%)

Query: 82  CMDEVYDALAQRLL-PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS 140
                 +ALA+  L    + A   +V  I G  G  G GK+TLA   V+R+++    K  
Sbjct: 20  VRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSE-AAAKEG 78

Query: 141 SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR 180
               Q                L + Q       + A A  
Sbjct: 79  LTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALD 118

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

 Score = 37.3 bits (85), Expect = 6e-04
 Identities = 6/25 (24%), Positives = 13/25 (52%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           ++  A   G GK+TL  +++  +  
Sbjct: 4   LLAFAAWSGTGKTTLLKKLIPALCA 28

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 7/25 (28%), Positives = 13/25 (52%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           +V + G PG G +T +   +  + K
Sbjct: 3   VVVVTGVPGVGSTTSSQLAMDNLRK 27

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 213

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.5 bits (83), Expect = 0.001
 Identities = 7/27 (25%), Positives = 16/27 (59%)

Query: 108 HIVGLAGPPGAGKSTLAAEVVRRINKI 134
            ++ + G P  GK+ ++ ++ R +N I
Sbjct: 3   TLIVMVGLPARGKTYISKKLTRYLNFI 29

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           I  + G PG GKST+ A+V   ++ 
Sbjct: 3   IGIVTGIPGVGKSTVLAKVKEILDN 27

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

 Score = 36.1 bits (82), Expect = 0.002
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           I+ L+G PG+GKST+A  +     
Sbjct: 6   ILLLSGHPGSGKSTIAEALANLPG 29

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

 Score = 35.8 bits (81), Expect = 0.002
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
            + L G   +GK  +A  +   +N+
Sbjct: 8   TIFLTGYMNSGKDAIARALQVTLNQ 32

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 6/25 (24%), Positives = 12/25 (48%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRINK 133
           +  + G   +GK+TL  + V    +
Sbjct: 3   VWQVVGYKHSGKTTLMEKWVAAAVR 27

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

 Score = 35.3 bits (80), Expect = 0.003
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           +V + G PG+GK T  A +VR   
Sbjct: 8   VVFVLGGPGSGKGTQCANIVRDFG 31

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (79), Expect = 0.004
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
           ++I  L GP GAGKST+  ++ +++N  +
Sbjct: 3   RNIF-LVGPMGAGKSTIGRQLAQQLNMEF 30

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 107 KHIVGLAGPPGAGKSTLAAEVVRRINK 133
           +H+  L GPPG GK+TL  +    +  
Sbjct: 2   RHV-FLTGPPGVGKTTLIHKASEVLKS 27

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)

Query: 106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIW 135
            K +  + G   +GKS L  ++    N   
Sbjct: 7   AKTVA-ILGGESSGKSVLVNKLAAVFNTTS 35

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} Length = 225

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

 Score = 35.4 bits (80), Expect = 0.004
 Identities = 8/24 (33%), Positives = 13/24 (54%)

Query: 109 IVGLAGPPGAGKSTLAAEVVRRIN 132
           ++ + GP GAGK TL   +   + 
Sbjct: 5   VITIDGPSGAGKGTLCKAMAEALQ 28

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} Length = 158

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

 Score = 34.7 bits (79), Expect = 0.004
 Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 89  ALAQRLLPTSALASNVNVKH-IVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSF 142
              ++      L      K  +V L G  GAGK+TL   +++ I      K+ ++
Sbjct: 16  RFGKKF--AEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQGNVKSPTY 68

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 6/26 (23%), Positives = 14/26 (53%)

Query: 110 VGLAGPPGAGKSTLAAEVVRRINKIW 135
           + + G PG GK+++A  +   ++   
Sbjct: 8   ILITGTPGTGKTSMAEMIAAELDGFQ 33

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d1g2912	240	Maltose transport protein MalK, N-terminal domain	100.0
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	100.0
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	100.0
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	100.0
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	100.0
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	100.0
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	100.0
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	100.0
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	100.0
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	100.0
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	100.0
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	100.0
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	100.0
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	100.0
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	100.0
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	100.0
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	99.97
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	99.97
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	99.49
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	99.3
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	99.29
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	99.1
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	98.85
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	98.85
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.06
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	98.01
d2qy9a2	211	GTPase domain of the signal recognition particle r	97.96
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	97.91
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.89
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.87
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.86
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.85
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	97.82
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.82
d1j8yf2	211	GTPase domain of the signal sequence recognition p	97.81
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.79
d1okkd2	207	GTPase domain of the signal recognition particle r	97.78
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.72
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	97.72
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	97.71
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.69
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.67
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.66
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.64
d1ls1a2	207	GTPase domain of the signal sequence recognition p	97.61
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.59
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.59
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.58
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.58
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.57
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.53
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	97.52
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.5
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.49
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.45
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.44
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.37
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.3
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.3
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.28
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.28
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.25
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	97.25
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.21
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.21
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.19
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.19
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.18
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.17
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	97.15
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.14
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.13
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.13
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.13
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.12
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.11
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.1
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.1
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.08
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.06
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.03
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.03
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.03
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.02
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	97.01
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	97.01
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.0
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.99
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.98
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.98
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.97
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.97
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.96
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.94
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.93
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	96.92
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	96.91
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.91
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.89
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.87
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.83
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.8
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.79
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.79
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.75
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.71
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.7
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.69
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.69
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.68
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.66
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.64
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.62
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.61
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.6
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.56
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.53
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.52
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.51
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.51
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.5
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.48
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.46
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.46
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.44
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.43
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.4
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.38
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.37
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.36
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.35
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.33
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.31
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.31
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.31
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.29
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.28
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.25
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.24
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.24
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.21
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.18
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.17
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	96.17
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.15
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	96.14
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.11
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.09
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	96.09
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.09
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.09
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.08
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.08
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.06
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.04
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.03
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	96.02
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.01
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.01
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.0
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	95.97
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	95.96
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	95.95
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	95.94
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.94
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	95.92
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	95.92
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.91
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.91
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.89
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.87
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	95.86
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.82
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.82
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.82
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.81
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	95.8
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	95.77
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.76
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.72
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	95.72
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	95.7
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.67
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.63
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	95.63
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	95.61
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.59
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.56
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	95.56
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.48
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	95.48
d1xpua3	289	Transcription termination factor Rho, ATPase domai	95.45
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.42
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.37
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.37
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.35
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.29
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.28
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.27
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.23
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.22
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.21
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.21
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.14
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.09
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.09
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	95.07
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.04
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	95.01
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	94.99
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	94.89
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	94.85
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.83
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	94.79
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.55
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	94.51
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	94.32
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	94.3
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.05
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.0
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.99
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	93.98
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	93.87
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	93.69
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.62
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	93.6
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.43
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.31
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.12
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	92.92
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	92.89
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	92.6
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.49
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	92.39
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.23
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	92.14
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	91.67
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	91.37
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	91.28
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.88
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	90.85
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.62
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	90.56
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	90.51
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	90.47
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.45
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	90.35
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	90.3
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	90.12
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	90.04
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	90.0
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	89.89
d1tuea_	205	Replication protein E1 helicase domain {Human papi	89.88
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	89.45
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	89.34
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	89.26
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	88.44
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	88.27
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	87.86
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	87.81
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	87.72
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	87.67
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	87.41
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	86.96
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	86.59
d1gg4a4	214	UDP-murNac-tripeptide D-alanyl-D-alanine-adding en	85.65
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	85.11
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	82.75
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	81.83
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	81.07

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=100.00  E-value=1.4e-41  Score=287.17  Aligned_cols=169  Identities=14%  Similarity=0.118  Sum_probs=145.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |+.|+++||+|.|++..    ||+||||+|++||++||+||||||||||+|+|+|+++   |++|+ .++|...      
T Consensus         1 M~~i~v~nl~k~yg~~~----al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~---p~sG~I~~~g~~i~~~~~~   73 (240)
T d1g2912           1 MAGVRLVDVWKVFGEVT----AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE---PSRGQIYIGDKLVADPEKG   73 (240)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSC---CSEEEEEETTEEEEEGGGT
T ss_pred             CCcEEEEeEEEEECCEE----EEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEEecccchh
Confidence            67899999999999854    7899999999999999999999999999999999998   99999 6666321      


Q ss_pred             ------CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhh
Q 025366          148 ------PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVED  219 (254)
Q Consensus       148 ------~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~i  219 (254)
                            ....|. +.++... + +.+++.+|+.+.....+.+......++.++++.+++.  .+.++.+|||||+||++|
T Consensus        74 ~~~~~~~r~ig~-v~Q~~~L-~-~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~I  150 (240)
T d1g2912          74 IFVPPKDRDIAM-VFQSYAL-Y-PHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVAL  150 (240)
T ss_dssp             EECCGGGSSEEE-ECSCCCC-C-TTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHH
T ss_pred             hhccccccccee-cccchhh-c-chhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHH
Confidence                  234665 6666533 2 2389999999998888877666667789999998886  577889999999999999


Q ss_pred             hhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          220 DILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       220 a~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||||+.+|+|||+||||++||+..+.+++++|.+
T Consensus       151 AraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~  184 (240)
T d1g2912         151 GRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKK  184 (240)
T ss_dssp             HHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999998853

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=8.1e-42  Score=288.23  Aligned_cols=169  Identities=12%  Similarity=0.117  Sum_probs=139.9

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |..|+++||+|.|++..    ||+||||+|++||+++|+||||||||||+|+|+|+++   |++|+ .++|...      
T Consensus         4 M~~I~v~nlsk~yg~~~----al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~   76 (239)
T d1v43a3           4 MVEVKLENLTKRFGNFT----AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE---PTEGRIYFGDRDVTYLPPK   76 (239)
T ss_dssp             CCCEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCGG
T ss_pred             cCeEEEEEEEEEECCEE----EEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCC---CCCCEEEEcceecccCCcc
Confidence            56799999999999854    7899999999999999999999999999999999998   99999 6777422      


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~  225 (254)
                      ....|+ ++++...++  .+++.+|+.+.....+++......++.++++.+++.  .+.++.+||||||||++||+||+.
T Consensus        77 ~r~ig~-v~Q~~~l~~--~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRvaiAraL~~  153 (239)
T d1v43a3          77 DRNISM-VFQSYAVWP--HMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVV  153 (239)
T ss_dssp             GGTEEE-EEC--------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred             cceEEE-Eeechhhcc--cchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHhhhcc
Confidence            234676 666653322  379999988766666665555567788899999887  678899999999999999999999


Q ss_pred             CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          226 QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       226 ~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|+|||+||||++||+..+.++++++.+
T Consensus       154 ~P~iLllDEPts~LD~~~~~~i~~ll~~  181 (239)
T d1v43a3         154 EPDVLLMDEPLSNLDAKLRVAMRAEIKK  181 (239)
T ss_dssp             CCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             CCCceeecCCcccCCHHHHHHHHHHHHH
Confidence            9999999999999999999999998853

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=4.4e-41  Score=284.06  Aligned_cols=171  Identities=16%  Similarity=0.164  Sum_probs=147.8

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      ||+++||+|.|+.....+.||+||||+|++||++||+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~---p~sG~I~~~g~~i~~~~~~~~   77 (240)
T d3dhwc1           1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER---PTEGSVLVDGQELTTLSESEL   77 (240)
T ss_dssp             CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSC---CSEEEEEETTEEECTTCHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCcc---ccCCceEEcCeEeeeCChhhh
Confidence            58999999999876556668899999999999999999999999999999999998   99999 67774321       


Q ss_pred             ----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhh
Q 025366          149 ----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       149 ----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~a  222 (254)
                          ...|. |+++. .++. .+++.+|+.+.....+.+......++.++++.+++.  .+.++.+|||||+|||+||||
T Consensus        78 ~~~rr~ig~-VfQ~~-~l~~-~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAra  154 (240)
T d3dhwc1          78 TKARRQIGM-IFQHF-NLLS-SRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARA  154 (240)
T ss_dssp             HHHHHHEEE-CCSSC-CCCT-TSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHH
T ss_pred             hhhhccccc-ccccc-ccCC-CccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhh
Confidence                13565 67765 3333 379999999988888887777778899999999886  567889999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+.+|++||+||||++||+..+.+++++|.+
T Consensus       155 L~~~P~lLllDEPt~~LD~~~~~~i~~~l~~  185 (240)
T d3dhwc1         155 LASNPKVLLCDEATSALDPATTRSILELLKD  185 (240)
T ss_dssp             HHTCCSEEEEESGGGSSCHHHHHHHHHHHHH
T ss_pred             hccCCCeEEeccccccCCHHHhhHHHHHHHH
Confidence            9999999999999999999999999999864

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=3.2e-41  Score=283.59  Aligned_cols=165  Identities=13%  Similarity=0.084  Sum_probs=109.3

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (254)
                      |+++||+|.|++..    ||+||||+|++||++||+||||||||||+|+|+|+++   |++|+ .++|+..      ...
T Consensus         1 Iev~nv~k~yg~~~----~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~---p~sG~I~i~g~~i~~~~~~~r~   73 (232)
T d2awna2           1 VQLQNVTKAWGEVV----VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET---ITSGDLFIGEKRMNDTPPAERG   73 (232)
T ss_dssp             EEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEESSSCCTTSCGGGTC
T ss_pred             CEEEEEEEEECCEE----EEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCC---CCCCEEEECCEECCCCchhhce
Confidence            68999999998854    7799999999999999999999999999999999998   99999 6777432      234


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      .|. ++++...++  .+++.+|+.+.....+++......++.++++.+++.  .+.++.+||||||||++|||||+.+|+
T Consensus        74 ig~-v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~  150 (232)
T d2awna2          74 VGM-VFQSYALYP--HLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPS  150 (232)
T ss_dssp             EEE-ECSSCCC-----------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCS
T ss_pred             eee-ecccccccc--chhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence            575 666653332  379999999888778877777778889999998886  577899999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      +||+||||++||+..+.+++++|.
T Consensus       151 illlDEPts~LD~~~~~~i~~~l~  174 (232)
T d2awna2         151 VFLLDEPLSNLDAALRVQMRIEIS  174 (232)
T ss_dssp             EEEEESTTTTSCHHHHHHHHHHHH
T ss_pred             EEEEcCCCCCCCHHHHHHHHHHHH
Confidence            999999999999999999998875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=2.8e-41  Score=285.16  Aligned_cols=171  Identities=15%  Similarity=0.165  Sum_probs=144.7

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------  147 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------  147 (254)
                      |..|+++||+|.|++.  .+.||+||||+|++||++||+||||||||||+++|+|+++   |++|+ .++|...      
T Consensus         1 M~~i~v~nlsk~y~~g--~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~---p~~G~I~~~g~~i~~~~~~   75 (242)
T d1oxxk2           1 MVRIIVKNVSKVFKKG--KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDV---PSTGELYFDDRLVASNGKL   75 (242)
T ss_dssp             CCCEEEEEEEEEEGGG--TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSC---CSEEEEEETTEEEEETTEE
T ss_pred             CCEEEEEeEEEEECCC--CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcC---CCCceEEECCEEeecCchh
Confidence            5679999999999652  2447899999999999999999999999999999999998   99999 6776321      


Q ss_pred             -----CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhh
Q 025366          148 -----PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDD  220 (254)
Q Consensus       148 -----~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia  220 (254)
                           +...|. ++++.. ++. .+++.||+.+.....+++......++.++++.+++.  .+.++.+||||||||++||
T Consensus        76 ~~~~~rr~ig~-vfQ~~~-L~p-~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiA  152 (242)
T d1oxxk2          76 IVPPEDRKIGM-VFQTWA-LYP-NLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA  152 (242)
T ss_dssp             SSCGGGSCEEE-EETTSC-CCT-TSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred             hcchhhccceE-Eecccc-ccc-cccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHH
Confidence                 234665 667643 332 379999998877777766555667789999999886  5788999999999999999


Q ss_pred             hhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          221 ILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       221 ~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||+.+|++||+||||++||+..+.++.++|.+
T Consensus       153 RaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~  185 (242)
T d1oxxk2         153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKE  185 (242)
T ss_dssp             HHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHH
T ss_pred             hHHhhcccceeecCCccCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999998854

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.4e-40  Score=277.12  Aligned_cols=171  Identities=14%  Similarity=0.138  Sum_probs=140.0

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      ||+++||+|.|+...+.+.||+||||+|++||++||+||||||||||+++|+|+++   |++|+ .++|....       
T Consensus         1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~---p~sG~I~~~g~~i~~~~~~~~   77 (230)
T d1l2ta_           1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDDDEL   77 (230)
T ss_dssp             CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHHH
T ss_pred             CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCC---CCcceeEECCEEcCcCChhhc
Confidence            58999999999876566778999999999999999999999999999999999998   99999 67774321       


Q ss_pred             -----CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCC---ccHHHHHHHHHhhccC---CCCCCCCCChhhhhhH
Q 025366          149 -----PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWT---FNPLLLLNCLKNLRNQ---GSVYAPSFDHGVGDPV  217 (254)
Q Consensus       149 -----~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~---~~~~~~~~~l~~l~l~---~~~~~~~lS~G~~qrv  217 (254)
                           ...|. +.|+...++  .+++.+++.+..........   .....+.+.++.+++.   .+.++.+|||||+|||
T Consensus        78 ~~~r~~~ig~-v~Q~~~l~~--~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRv  154 (230)
T d1l2ta_          78 TKIRRDKIGF-VFQQFNLIP--LLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRV  154 (230)
T ss_dssp             HHHHHHHEEE-ECTTCCCCT--TSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHH
T ss_pred             chhhcceEEE-EecchhhCc--CccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHH
Confidence                 13565 677653333  37999999887665443322   2234567777777775   4668899999999999


Q ss_pred             hhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          218 EDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       218 ~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +|||||+.+|+|||+||||++||+..++++++++.+
T Consensus       155 aIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~  190 (230)
T d1l2ta_         155 AIARALANNPPIILADQPTGALDSKTGEKIMQLLKK  190 (230)
T ss_dssp             HHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999998864

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=100.00  E-value=5.7e-40  Score=275.24  Aligned_cols=163  Identities=14%  Similarity=0.182  Sum_probs=139.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CC
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PP  149 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~  149 (254)
                      ||+++||+|+|++.     +|+||||+|++||+++|+||||||||||+|+|+|+++   |++|+ .++|...      +.
T Consensus         1 mi~v~nlsk~y~~~-----aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~---p~sG~I~~~G~~i~~~~~~~r   72 (229)
T d3d31a2           1 MIEIESLSRKWKNF-----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHV---PDSGRILLDGKDVTDLSPEKH   72 (229)
T ss_dssp             CEEEEEEEEECSSC-----EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSC---CSEEEEEETTEECTTSCHHHH
T ss_pred             CEEEEEEEEEeCCE-----EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcC---CCCCEEEEccEeccccchhHh
Confidence            58999999999862     6799999999999999999999999999999999998   99999 6777432      12


Q ss_pred             CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCC
Q 025366          150 DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQH  227 (254)
Q Consensus       150 ~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p  227 (254)
                      ..|. ++++...++  .+++.+|+.+.....+..   ...++.++++.+++.  .+.++.+||||||||++|||||+.+|
T Consensus        73 ~ig~-v~Q~~~l~~--~~tV~enl~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P  146 (229)
T d3d31a2          73 DIAF-VYQNYSLFP--HMNVKKNLEFGMRMKKIK---DPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNP  146 (229)
T ss_dssp             TCEE-ECTTCCCCT--TSCHHHHHHHHHHHHCCC---CHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCC
T ss_pred             ccee-eccccccCc--cccHHHHHHHHHhhcccc---HHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccC
Confidence            4676 666653332  389999999888777654   346788889988887  56788899999999999999999999


Q ss_pred             cEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          228 KVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       228 ~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ++||+||||++||+..+.++++++.+
T Consensus       147 ~iLllDEPts~LD~~~~~~i~~~l~~  172 (229)
T d3d31a2         147 KILLLDEPLSALDPRTQENAREMLSV  172 (229)
T ss_dssp             SEEEEESSSTTSCHHHHHHHHHHHHH
T ss_pred             CceeecCCCcCCCHHHHHHHHHHHHH
Confidence            99999999999999999999998853

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.2e-38  Score=272.48  Aligned_cols=167  Identities=15%  Similarity=0.171  Sum_probs=138.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC-------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP-------  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~-------  148 (254)
                      .|+++||+|.|++..    ||+||||+|++||++||+||||||||||+++|+|+++   |++|+ .++|+...       
T Consensus         2 ~Lev~nl~k~yg~~~----al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~~   74 (258)
T d1b0ua_           2 KLHVIDLHKRYGGHE----VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEK---PSEGAIIVNGQNINLVRDKDG   74 (258)
T ss_dssp             CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEECCEEECTTS
T ss_pred             eEEEEEEEEEECCEE----EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCcc---CCCCCEEECCEEeccCCccch
Confidence            589999999998854    7799999999999999999999999999999999998   99999 67774321       


Q ss_pred             --------------CCeEEEeeCCCCCCCCcCCChhhcHHHHH-HHcCCCCCccHHHHHHHHHhhccC---CCCCCCCCC
Q 025366          149 --------------PDVATVLPMDGFHLYLSQLDAMEDPKEAH-ARRGAPWTFNPLLLLNCLKNLRNQ---GSVYAPSFD  210 (254)
Q Consensus       149 --------------~~~g~~i~~~~~~~~~~~l~~~e~~~~~~-~~~g~~~~~~~~~~~~~l~~l~l~---~~~~~~~lS  210 (254)
                                    ...|. ++++. .++ +.+++.+++.+.. ...+.+.........++++.+++.   .+.++.+||
T Consensus        75 ~~~~~~~~~~~~~r~~ig~-vfQ~~-~l~-~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LS  151 (258)
T d1b0ua_          75 QLKVADKNQLRLLRTRLTM-VFQHF-NLW-SHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLS  151 (258)
T ss_dssp             SEEESCHHHHHHHHHHEEE-ECSSC-CCC-TTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSC
T ss_pred             hcccccHhHHHHHhcceEE-EEech-hhc-cchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCccccc
Confidence                          12454 56654 333 2378999987754 344555555566788899998885   356788999


Q ss_pred             hhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          211 HGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       211 ~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||+|||+||+||+.+|++||+||||++||+..++++.++|.+
T Consensus       152 GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~  194 (258)
T d1b0ua_         152 GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQ  194 (258)
T ss_dssp             HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhh
Confidence            9999999999999999999999999999999999999999864

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.3e-38  Score=267.90  Aligned_cols=167  Identities=13%  Similarity=0.090  Sum_probs=139.2

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC-------C
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK-------P  148 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~-------~  148 (254)
                      .|+++||+|.|++..    ||+|+||+|++||++||+||||||||||+++|+|+++   |++|+ .++|...       +
T Consensus         2 aI~v~nl~k~yg~~~----vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~---p~~G~i~i~G~~i~~~~~~~~   74 (238)
T d1vpla_           2 AVVVKDLRKRIGKKE----ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK---PSSGIVTVFGKNVVEEPHEVR   74 (238)
T ss_dssp             CEEEEEEEEEETTEE----EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTCHHHHH
T ss_pred             CEEEEeEEEEECCEE----EEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCC---CCCCEEEECcEecccChHHHH
Confidence            378999999999855    7799999999999999999999999999999999998   99999 5666422       2


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCC
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQ  226 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~  226 (254)
                      ...++ +++....+.  .+++.|++.+....++.........+..+++.+++.  .+.++..||+||+||+++|+||+.+
T Consensus        75 ~~i~~-vpq~~~~~~--~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~  151 (238)
T d1vpla_          75 KLISY-LPEEAGAYR--NMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVN  151 (238)
T ss_dssp             TTEEE-ECTTCCCCT--TSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTC
T ss_pred             hhEeE-eeeccccCC--CccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcC
Confidence            44565 566543322  378999998887777765444455667788877775  4667889999999999999999999


Q ss_pred             CcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          227 HKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       227 p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |++|||||||++||+..++++.+++++
T Consensus       152 p~illLDEPt~gLD~~~~~~i~~~i~~  178 (238)
T d1vpla_         152 PRLAILDEPTSGLDVLNAREVRKILKQ  178 (238)
T ss_dssp             CSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             CCEEEecCCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999864

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=100.00  E-value=3.6e-38  Score=267.11  Aligned_cols=167  Identities=19%  Similarity=0.182  Sum_probs=128.8

Q ss_pred             ceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC------
Q 025366           76 PVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP------  148 (254)
Q Consensus        76 ~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~------  148 (254)
                      .+|+++||+|.|++..    ||+||||+|++||++||+||||||||||+|+|+|+++   |++|+ .++|....      
T Consensus         5 ~~Lev~~l~k~yg~~~----al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~   77 (240)
T d1ji0a_           5 IVLEVQSLHVYYGAIH----AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR---AQKGKIIFNGQDITNKPAHV   77 (240)
T ss_dssp             EEEEEEEEEEEETTEE----EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHHH
T ss_pred             eEEEEeeEEEEECCEE----EEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCC---CCccEEEecccccccccHHH
Confidence            4899999999999854    7799999999999999999999999999999999998   99999 67774321      


Q ss_pred             ---CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHh---hccCCCCCCCCCChhhhhhHhhhhh
Q 025366          149 ---PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKN---LRNQGSVYAPSFDHGVGDPVEDDIL  222 (254)
Q Consensus       149 ---~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~---l~l~~~~~~~~lS~G~~qrv~ia~a  222 (254)
                         ...++ ++++. .++ +.+++.++..+...... ...........+++.   +.-..+.++.+||||||||++||+|
T Consensus        78 ~~r~gi~~-~~q~~-~l~-~~ltv~en~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAra  153 (240)
T d1ji0a_          78 INRMGIAL-VPEGR-RIF-PELTVYENLMMGAYNRK-DKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRA  153 (240)
T ss_dssp             HHHTTEEE-ECSSC-CCC-TTSBHHHHHHGGGTTCC-CSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred             HHHhcccc-cCccc-ccC-CcccHHHHHHHHHHhcC-CHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHH
Confidence               11333 44433 333 23788888755332221 222222333344443   3344678889999999999999999


Q ss_pred             hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          223 VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       223 l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+.+|++|||||||++||+..+.++++++.+
T Consensus       154 L~~~P~lLllDEPt~gLD~~~~~~i~~~i~~  184 (240)
T d1ji0a_         154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQK  184 (240)
T ss_dssp             HTTCCSEEEEECTTTTCCHHHHHHHHHHHHH
T ss_pred             HHhCCCEeeecCCCcCCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999864

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=100.00  E-value=3.7e-38  Score=269.32  Aligned_cols=169  Identities=15%  Similarity=0.151  Sum_probs=133.8

Q ss_pred             cceEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCC----
Q 025366           75 IPVVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP----  149 (254)
Q Consensus        75 ~~~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~----  149 (254)
                      |.+|+++||+|.|++.+    ||+||||++++||++||+||||||||||+|+|+|+++   |++|+ .++|.....    
T Consensus         2 M~iL~v~nlsk~yg~~~----aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~---p~~G~I~~~g~~i~~~~~~   74 (254)
T d1g6ha_           2 MEILRTENIVKYFGEFK----ALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLK---ADEGRVYFENKDITNKEPA   74 (254)
T ss_dssp             CEEEEEEEEEEEETTEE----EEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEECTTCCHH
T ss_pred             cceEEEEEEEEEECCeE----EEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCc---CCCcEEEECCEeccchhHH
Confidence            78999999999999854    7799999999999999999999999999999999998   99999 677753311    


Q ss_pred             -----CeEEEeeCCCCCCCCcCCChhhcHHHHHH------------HcCCCCC-ccHHHHHHHHHhhccC--CCCCCCCC
Q 025366          150 -----DVATVLPMDGFHLYLSQLDAMEDPKEAHA------------RRGAPWT-FNPLLLLNCLKNLRNQ--GSVYAPSF  209 (254)
Q Consensus       150 -----~~g~~i~~~~~~~~~~~l~~~e~~~~~~~------------~~g~~~~-~~~~~~~~~l~~l~l~--~~~~~~~l  209 (254)
                           ..+. ++++...+  +.+++.||+.+...            ....... ....+..++++.+++.  .+.++.+|
T Consensus        75 ~~~~~gi~~-v~Q~~~~~--~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L  151 (254)
T d1g6ha_          75 ELYHYGIVR-TFQTPQPL--KEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGEL  151 (254)
T ss_dssp             HHHHHTEEE-CCCCCGGG--GGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred             HHHHhcCCc-cCCccccC--CCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhC
Confidence                 1343 55554322  23788888765311            1111221 2234566777777765  46778999


Q ss_pred             ChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          210 DHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       210 S~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||||+++|+||+.+|++|||||||++||+..+.++.+++.+
T Consensus       152 SgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~  195 (254)
T d1g6ha_         152 SGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLE  195 (254)
T ss_dssp             CHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998854

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=100.00  E-value=5.4e-37  Score=253.42  Aligned_cols=164  Identities=16%  Similarity=0.196  Sum_probs=131.5

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC---CCCeE
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK---PPDVA  152 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~---~~~~g  152 (254)
                      .|+++||++.|+.   +  +|+|+||+|++|+++||+||||||||||+++|+|+++   |++|+ .++|...   +...+
T Consensus         2 ~lev~~ls~~y~~---~--vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~---p~~G~I~~~g~~i~~~~~~i~   73 (200)
T d1sgwa_           2 KLEIRDLSVGYDK---P--VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK---PLKGEIIYNGVPITKVKGKIF   73 (200)
T ss_dssp             EEEEEEEEEESSS---E--EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGGGGGEE
T ss_pred             eEEEEEEEEEeCC---e--EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccc---cCCCEEEECCEehhHhcCcEE
Confidence            5899999999964   2  5699999999999999999999999999999999998   99999 6777432   22334


Q ss_pred             EEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC-CCCCCCCCChhhhhhHhhhhhhcCCCcEEE
Q 025366          153 TVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVI  231 (254)
Q Consensus       153 ~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~-~~~~~~~lS~G~~qrv~ia~al~~~p~vlI  231 (254)
                      + ++++...  ...+++.++.......++..  .+...+.+.++.+.+. .+.++.+||+||+||+++|++++.+|+++|
T Consensus        74 ~-~~~~~~~--~~~~t~~~~l~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~lll  148 (200)
T d1sgwa_          74 F-LPEEIIV--PRKISVEDYLKAVASLYGVK--VNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYV  148 (200)
T ss_dssp             E-ECSSCCC--CTTSBHHHHHHHHHHHTTCC--CCHHHHHHHHHHTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEE
T ss_pred             E-EeecccC--CCCcCHHHHHHHHHHhcCCc--cCHHHHHHHHHHcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEE
Confidence            3 4444322  23368888887776666643  3346677778877753 456778999999999999999999999999


Q ss_pred             EeCCCCCCCHHHHHHHHHHhhc
Q 025366          232 VDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       232 lDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |||||++||+..+.++.+.+.+
T Consensus       149 lDEPt~gLD~~~~~~i~~~l~~  170 (200)
T d1sgwa_         149 LDDPVVAIDEDSKHKVLKSILE  170 (200)
T ss_dssp             EESTTTTSCTTTHHHHHHHHHH
T ss_pred             EcCcccccCHHHHHHHHHHHHH
Confidence            9999999999999988887653

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.6e-35  Score=251.00  Aligned_cols=162  Identities=19%  Similarity=0.190  Sum_probs=123.9

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCC--------C
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQV--------K  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~--------~  147 (254)
                      ||+++||++.|++. +.  +|+||||+|++|+++||+||||||||||+++|+|+++   |++|+ .++|..        .
T Consensus         1 mle~knvsf~Y~~~-~~--vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~   74 (242)
T d1mv5a_           1 MLSARHVDFAYDDS-EQ--ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ---PTAGEITIDGQPIDNISLENW   74 (242)
T ss_dssp             CEEEEEEEECSSSS-SC--SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSC---CSBSCEEETTEESTTTSCSCC
T ss_pred             CEEEEEEEEECCCC-Cc--eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhC---CCCCEEEECCEEeccccHHHH
Confidence            58999999999763 22  5699999999999999999999999999999999998   99999 677632        1


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccCC-------------CCCCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQG-------------SVYAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~~-------------~~~~~~lS~G~~  214 (254)
                      +...+. ++++.+.+.   .++.+|+.     ++.............++...+..             ......||||||
T Consensus        75 r~~i~~-v~Q~~~lf~---~ti~eNi~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqk  145 (242)
T d1mv5a_          75 RSQIGF-VSQDSAIMA---GTIRENLT-----YGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR  145 (242)
T ss_dssp             TTTCCE-ECCSSCCCC---EEHHHHTT-----SCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred             HhheEE-EccccccCC---cchhhhee-----cccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHH
Confidence            334565 777765332   35655542     23333344555555555444321             112347999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||+++||||+.+|+||||||||++||+.....+.+.|++
T Consensus       146 QRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~  184 (242)
T d1mv5a_         146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS  184 (242)
T ss_dssp             HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888753

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=100.00  E-value=2.7e-35  Score=247.87  Aligned_cols=160  Identities=11%  Similarity=0.089  Sum_probs=128.0

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC------CCC
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK------PPD  150 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~------~~~  150 (254)
                      +++ ++.|+|++..      -||||++. +++++|+||||||||||+|+|+|+++   |++|+ .++|...      +..
T Consensus         3 l~v-~~~k~~g~~~------~~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~---p~~G~I~~~G~~i~~~~~~~r~   71 (240)
T d2onka1           3 LKV-RAEKRLGNFR------LNVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVK---PDRGEVRLNGADITPLPPERRG   71 (240)
T ss_dssp             EEE-EEEEEETTEE------EEEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSC---CSEEEEEETTEECTTSCTTTSC
T ss_pred             EEE-EEEEEECCEE------EEEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCC---CCceEEEECCEECCcCCHHHcC
Confidence            667 6789999843      28999996 68999999999999999999999998   99999 6676321      234


Q ss_pred             eEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcCCCc
Q 025366          151 VATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGLQHK  228 (254)
Q Consensus       151 ~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~~p~  228 (254)
                      .|. ++++...++  .+++.||+.+..+  ........+++.++++.+++.  .+.++.+|||||||||+|||||+.+|+
T Consensus        72 ig~-v~Q~~~l~~--~ltV~enl~~~l~--~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~  146 (240)
T d2onka1          72 IGF-VPQDYALFP--HLSVYRNIAYGLR--NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPR  146 (240)
T ss_dssp             CBC-CCSSCCCCT--TSCHHHHHHTTCT--TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred             cee-eccchhhcc--cchhhHhhhhhhc--ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCC
Confidence            565 666643322  3799999876431  222333345678899988886  577889999999999999999999999


Q ss_pred             EEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          229 VVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       229 vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      +||+||||++||+..+.++++++.+
T Consensus       147 illlDEPts~LD~~~~~~i~~~i~~  171 (240)
T d2onka1         147 LLLLDEPLSAVDLKTKGVLMEELRF  171 (240)
T ss_dssp             SBEEESTTSSCCHHHHHHHHHHHHH
T ss_pred             ceEecCccccCCHHHHHHHHHHHHH
Confidence            9999999999999999999998853

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.3e-35  Score=247.55  Aligned_cols=164  Identities=18%  Similarity=0.150  Sum_probs=124.3

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      .|+++||++.|++.. ...+|+||||+|++|+++||+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus        11 ~I~~~nvsf~Y~~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~---p~~G~I~i~g~~i~~~~~~~~   86 (251)
T d1jj7a_          11 LVQFQDVSFAYPNRP-DVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ---PTGGQLLLDGKPLPQYEHRYL   86 (251)
T ss_dssp             CEEEEEEEECCTTST-TCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEEGGGBCHHHH
T ss_pred             eEEEEEEEEECCCCC-CCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccC---CCcCEEEECCEecchhhhHHH
Confidence            599999999997642 3346799999999999999999999999999999999998   99999 6777432        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHH---------HHHHhhccC----CCCCCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLL---------NCLKNLRNQ----GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~---------~~l~~l~l~----~~~~~~~lS~G~~  214 (254)
                      +...+. +.++.+.+.   .++.+|+.+     +...........         +.++.+..+    .......||||||
T Consensus        87 r~~i~~-v~Q~~~lf~---~tv~eni~~-----g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqk  157 (251)
T d1jj7a_          87 HRQVAA-VGQEPQVFG---RSLQENIAY-----GLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQR  157 (251)
T ss_dssp             HHHEEE-ECSSCCCCS---SBHHHHHHC-----SCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHH
T ss_pred             HHHhhh-ccccccccC---cchhhhhhh-----hhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHc
Confidence            123454 777765432   467776543     332222222222         223333222    2345678999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||++|||||+.+|+|||+||||++||+....++.++|.+
T Consensus       158 QRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~  196 (251)
T d1jj7a_         158 QAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYE  196 (251)
T ss_dssp             HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHT
T ss_pred             eEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHH
Confidence            999999999999999999999999999999999998853

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=100.00  E-value=1.8e-34  Score=246.03  Aligned_cols=163  Identities=14%  Similarity=0.110  Sum_probs=124.8

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      -|+++||++.|++..  ..+|+||||+|++|+++||+||||||||||+++|+|+++   |++|+ .++|...        
T Consensus        13 ~I~~~nvsf~Y~~~~--~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~~   87 (253)
T d3b60a1          13 DLEFRNVTFTYPGRE--VPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYD---IDEGHILMDGHDLREYTLASL   87 (253)
T ss_dssp             CEEEEEEEECSSSSS--CCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTC---CSEEEEEETTEETTTBCHHHH
T ss_pred             EEEEEEEEEEeCCCC--CceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccC---CCccEEEECCcccchhhhhhh
Confidence            499999999998743  336799999999999999999999999999999999998   99999 6777432        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------C----CCCCCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~lS~G~~  214 (254)
                      +...++ ++++.+.+.   .+..++..     ++.+...+.+.+.++++..++         +    ....+..||||||
T Consensus        88 r~~i~~-v~Q~~~l~~---~ti~~n~~-----~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqk  158 (253)
T d3b60a1          88 RNQVAL-VSQNVHLFN---DTVANNIA-----YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQR  158 (253)
T ss_dssp             HHTEEE-ECSSCCCCS---SBHHHHHH-----TTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHH
T ss_pred             hheEEE-EeeccccCC---cchhhhhh-----hcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHH
Confidence            123454 777765443   35555443     333334445555544443322         2    2234568999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ||++|||||+.+|+||||||||++||+.....+.+.|.+
T Consensus       159 QRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~  197 (253)
T d3b60a1         159 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDE  197 (253)
T ss_dssp             HHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999988853

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.7e-34  Score=243.13  Aligned_cols=161  Identities=14%  Similarity=0.115  Sum_probs=123.6

Q ss_pred             EEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCC--------
Q 025366           78 VEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKP--------  148 (254)
Q Consensus        78 l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~--------  148 (254)
                      |+++||++.|++..+.  +|+||||+|++|+++||+||||||||||+++|+|+++   |++|+ .++|....        
T Consensus         2 I~~~nvsf~Y~~~~~~--vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~lr   76 (241)
T d2pmka1           2 ITFRNIRFRYKPDSPV--ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI---PENGQVLIDGHDLALADPNWLR   76 (241)
T ss_dssp             EEEEEEEEESSTTSCE--EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSC---CSEEEEEETTEETTTSCHHHHH
T ss_pred             eEEEEEEEEeCCCCcc--eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC---CCCCEEEECCEEecccchhhhh
Confidence            6899999999764333  5699999999999999999999999999999999998   99999 67774321        


Q ss_pred             CCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhcc---------C----CCCCCCCCChhhhh
Q 025366          149 PDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRN---------Q----GSVYAPSFDHGVGD  215 (254)
Q Consensus       149 ~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l---------~----~~~~~~~lS~G~~q  215 (254)
                      ...++ +.++.+.+.   .++.+|+.+     +. .....+.....++..++         +    .......|||||+|
T Consensus        77 ~~i~~-v~Q~~~lf~---~Ti~eNi~~-----~~-~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~Q  146 (241)
T d2pmka1          77 RQVGV-VLQDNVLLN---RSIIDNISL-----AN-PGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQ  146 (241)
T ss_dssp             HHEEE-ECSSCCCTT---SBHHHHHCT-----TS-TTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHH
T ss_pred             ceEEE-EecccccCC---ccccccccc-----cC-ccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHH
Confidence            23454 788765433   477776643     21 12334444444443332         1    12345789999999


Q ss_pred             hHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          216 PVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       216 rv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      |+++||||+.+|+||||||||++||+...+.+.+.|.+
T Consensus       147 RvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~  184 (241)
T d2pmka1         147 RIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHK  184 (241)
T ss_dssp             HHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHH
T ss_pred             HHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998854

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=1.2e-33  Score=240.89  Aligned_cols=161  Identities=14%  Similarity=0.096  Sum_probs=125.5

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCC--------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVK--------  147 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~--------  147 (254)
                      -|+++||+++|++....  +|+||||+|++|+++||+|+||||||||+++|+|+++   |++|+ .++|...        
T Consensus        16 ~I~~~nvsf~Y~~~~~~--vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~---p~~G~I~i~g~~i~~~~~~~l   90 (255)
T d2hyda1          16 RIDIDHVSFQYNDNEAP--ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD---VTSGQILIDGHNIKDFLTGSL   90 (255)
T ss_dssp             CEEEEEEEECSCSSSCC--SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC---CSEEEEEETTEEGGGSCHHHH
T ss_pred             EEEEEEEEEEeCCCCCc--ceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCC---ccccccccCCEEcccCCHHHh
Confidence            49999999999874333  5699999999999999999999999999999999998   99999 6776422        


Q ss_pred             CCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC---------CCC----CCCCCChhhh
Q 025366          148 PPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ---------GSV----YAPSFDHGVG  214 (254)
Q Consensus       148 ~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~---------~~~----~~~~lS~G~~  214 (254)
                      +...++ +.++.+.+.   .|+.+|+.+     +.+. ...+.+.++++..++.         .+.    ....|||||+
T Consensus        91 r~~i~~-v~Q~~~lf~---~Ti~eNi~~-----g~~~-~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~  160 (255)
T d2hyda1          91 RNQIGL-VQQDNILFS---DTVKENILL-----GRPT-ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQK  160 (255)
T ss_dssp             HHTEEE-ECSSCCCCS---SBHHHHHGG-----GCSS-CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHH
T ss_pred             hheeee-eeccccCCC---CCHHHHHhc-----cCcC-CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHH
Confidence            234565 777765433   478887743     2222 2344555555544432         222    3457999999


Q ss_pred             hhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          215 DPVEDDILVGLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       215 qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ||++|||||+.+|+||||||||++||+.....+.+.|.
T Consensus       161 QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~  198 (255)
T d2hyda1         161 QRLSIARIFLNNPPILILDEATSALDLESESIIQEALD  198 (255)
T ss_dssp             HHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999885

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=5.7e-33  Score=233.91  Aligned_cols=157  Identities=20%  Similarity=0.137  Sum_probs=119.7

Q ss_pred             eEEEecceeecccccceeccccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCC------
Q 025366           77 VVEARCMDEVYDALAQRLLPTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPP------  149 (254)
Q Consensus        77 ~l~i~~l~~~y~~~~~~vlal~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~------  149 (254)
                      +++++||++.|        +|++|||+|++||++||+||||||||||+++|+|+.    |++|+ .++|+....      
T Consensus         3 il~~~dv~~~~--------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~----~~~G~I~~~g~~i~~~~~~~~   70 (231)
T d1l7vc_           3 VMQLQDVAEST--------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT----SGKGSIQFAGQPLEAWSATKL   70 (231)
T ss_dssp             EEEEEEECCTT--------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC----CCSSEEEESSSBGGGSCHHHH
T ss_pred             EEEEECcccCc--------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC----CCceEEEECCEECCcCCHHHH
Confidence            68999997665        569999999999999999999999999999999976    88999 677754211      


Q ss_pred             --CeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCccHHHHHHHHHhhccC--CCCCCCCCChhhhhhHhhhhhhcC
Q 025366          150 --DVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTFNPLLLLNCLKNLRNQ--GSVYAPSFDHGVGDPVEDDILVGL  225 (254)
Q Consensus       150 --~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~~~~~~~~~l~~l~l~--~~~~~~~lS~G~~qrv~ia~al~~  225 (254)
                        ..++ +.+.....+.  .++.++...     +.......+.+.++++.+++.  .+.++..|||||+||+++|++++.
T Consensus        71 ~~~~~~-~~~~~~~~~~--~~v~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~  142 (231)
T d1l7vc_          71 ALHRAY-LSQQQTPPFA--TPVWHYLTL-----HQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQ  142 (231)
T ss_dssp             HHHEEE-ECSCCCCCSS--CBHHHHHHH-----HCSCTTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHH
T ss_pred             Hhhcee-eeccccCCcc--ccHHHHhhh-----ccchhhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHh
Confidence              1233 4444332221  334433322     222334456677888888775  456778999999999999999975


Q ss_pred             -------CCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          226 -------QHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       226 -------~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                             +|+||||||||++||+..+..+.+++++
T Consensus       143 ~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~  177 (231)
T d1l7vc_         143 ITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSA  177 (231)
T ss_dssp             HCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHH
T ss_pred             hCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence                   6799999999999999999999998864

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=4.9e-31  Score=227.87  Aligned_cols=136  Identities=13%  Similarity=0.131  Sum_probs=104.0

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCce-ecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHH
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS-SFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPK  174 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~-~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~  174 (254)
                      +|+||||+|++|+++||+||||||||||+++|+|+++   |++|+ .++|+     .++ +.++...+.   .++.+|+.
T Consensus        51 vL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~---p~~G~I~~~g~-----i~~-v~Q~~~l~~---~tv~eni~  118 (281)
T d1r0wa_          51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE---ASEGIIKHSGR-----VSF-CSQFSWIMP---GTIKENII  118 (281)
T ss_dssp             EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSC---CSEEEEECCSC-----EEE-ECSSCCCCS---EEHHHHHT
T ss_pred             EEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCc---CCCcEEEECCE-----EEE-EeccccccC---ceeecccc
Confidence            5699999999999999999999999999999999998   99999 56653     444 666654433   36666553


Q ss_pred             HHHHHcCCCCCccHHHHHHHHHhhccC-------------CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          175 EAHARRGAPWTFNPLLLLNCLKNLRNQ-------------GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       175 ~~~~~~g~~~~~~~~~~~~~l~~l~l~-------------~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                      +     +.  ..+......+++...+.             .......||||||||+++||||+.+|+||||||||++||+
T Consensus       119 ~-----~~--~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~LD~  191 (281)
T d1r0wa_         119 F-----GV--SYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDV  191 (281)
T ss_dssp             T-----TS--CCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCSSCH
T ss_pred             c-----cc--cccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCccccCCH
Confidence            2     22  22334444444433321             1223457999999999999999999999999999999999


Q ss_pred             HHHHHHHHH
Q 025366          242 GVWKDVSSM  250 (254)
Q Consensus       242 ~~~~~l~~l  250 (254)
                      ...+.+.+.
T Consensus       192 ~~~~~i~~~  200 (281)
T d1r0wa_         192 FTEEQVFES  200 (281)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999888764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.30  E-value=1.4e-14  Score=114.31  Aligned_cols=45  Identities=11%  Similarity=-0.152  Sum_probs=35.8

Q ss_pred             CCChhhhhhHhhhhhhcCCCcEEEEeCCCCC--CCHHHHHHHHHHhh
Q 025366          208 SFDHGVGDPVEDDILVGLQHKVVIVDGNYLF--LDGGVWKDVSSMFD  252 (254)
Q Consensus       208 ~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~--lD~~~~~~l~~ll~  252 (254)
                      .+++|++++.++++++..+|++|++|||...  .+...+..+.+++.
T Consensus        81 ~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~~~~~~~~l~~~l~  127 (178)
T d1ye8a1          81 EELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH  127 (178)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred             hhhhhhhHHHHHHHHHhcCCCceeecCCCccchhhHHHHHHHHHHhc
Confidence            3678999999999999999999999997544  35566666766664

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=3.5e-13  Score=116.26  Aligned_cols=131  Identities=23%  Similarity=0.326  Sum_probs=95.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCCCCCc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGAPWTF  186 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~~~~~  186 (254)
                      .-+|||.|++|||||||.+.|..++.+   ..         ......++.+|+|+.++..+.  +  .-....+|.|+++
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~~---~~---------~~~~v~~Is~D~F~~~~~~l~--~--~~~~~~~g~Pes~  143 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLSR---WP---------EHRRVELITTDGFLHPNQVLK--E--RGLMKKKGFPESY  143 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTT---ST---------TCCCEEEEEGGGGBCCHHHHH--H--HTCTTCTTSGGGB
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHhh---hc---------CCCceEEEeeeeeECCchHHH--H--hcCCccCCchHhh
Confidence            569999999999999999999999841   00         112244589999986532111  0  1112356778889


Q ss_pred             cHHHHHHHHHhhccC-CCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCHHHHHH------HHHHhhc
Q 025366          187 NPLLLLNCLKNLRNQ-GSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDGGVWKD------VSSMFDE  253 (254)
Q Consensus       187 ~~~~~~~~l~~l~l~-~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~~~~~~------l~~ll~~  253 (254)
                      |...+.+.+..+.-+ ..+..|.||+-...++.-.......|+|||+||.+...|+..|..      +.+++|.
T Consensus       144 D~~~L~~~L~~lk~g~~~v~~P~yd~~~~d~~~~~~~~~~~~dIlIvEGi~vL~~~~~~~~~~~~~~l~d~~D~  217 (308)
T d1sq5a_         144 DMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDF  217 (308)
T ss_dssp             CHHHHHHHHHHHTTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSE
T ss_pred             hHHHHHHHHHHHHcCCCcceeeccchhhcccCCCCceEeCCCCEEEEcchhhccCccccccccccchhhhhhhe
Confidence            999999999998766 467889999988888876666788899999999999988764332      5555553

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=7.3e-11  Score=100.41  Aligned_cols=119  Identities=24%  Similarity=0.365  Sum_probs=83.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHH--------H
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAH--------A  178 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~--------~  178 (254)
                      .-+|||.|+.|||||||.+.|.-.+..   ..|        ......++++|+||..     ..+......        .
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~~---~~~--------~~~~v~~iS~DdfY~t-----~~~r~~L~~~~~~~pl~~   90 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLME---KYG--------GEKSIGYASIDDFYLT-----HEDQLKLNEQFKNNKLLQ   90 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH---HHG--------GGSCEEEEEGGGGBCC-----HHHHHHHHHHTTTCGGGS
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHHH---HhC--------CCcceEeeccCCCCCC-----HHHHHHHhhhccccccce
Confidence            569999999999999999888655420   000        0112334899999854     222222221        2


Q ss_pred             HcCCCCCccHHHHHHHHHhhccCC------CCCCCCCC----hhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          179 RRGAPWTFNPLLLLNCLKNLRNQG------SVYAPSFD----HGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       179 ~~g~~~~~~~~~~~~~l~~l~l~~------~~~~~~lS----~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                      .+|.|.++|...+.++++.|.-+.      .+.+|.|+    .|...|+.-...+...++|||+||.+.|..+
T Consensus        91 ~RG~PgThD~~ll~~~l~~l~~~~~~~~~~~v~iP~fDk~~~~~~~Dr~~~~~~i~~~~dviI~EGWcvG~~p  163 (286)
T d1odfa_          91 GRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLGFNP  163 (286)
T ss_dssp             SSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTTCCC
T ss_pred             ecCCCcchhHHHHHHHHHHHHhhccccccccccCCchHHHhhccccccCcccceecCCCCEEEEechhhcccc
Confidence            368899999999999999887542      36788888    4667787766667778999999998888765

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.2e-09  Score=88.21  Aligned_cols=122  Identities=21%  Similarity=0.345  Sum_probs=74.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHH--cCCCC
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHAR--RGAPW  184 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~--~g~~~  184 (254)
                      .-+|||.|++|||||||.+.|+-.+.....+.         ......++.+|+|+..   .............  +..+.
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~l~~~~~~~---------~~~~~~vi~~D~yy~~---~~~~~~~~~~~~~~~~~~~~   69 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDY---------RQKQVVILSQDSFYRV---LTSEQKAKALKGQFNFDHPD   69 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTTGGGSCG---------GGCSEEEEEGGGGBCC---CCHHHHHHHHTTCSCTTSGG
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhchhcccc---------CCCceEEEeccccccc---cchhhhhhhhhcccccCCcH
Confidence            45899999999999999999988873100000         0112345899988643   1222111111111  11234


Q ss_pred             CccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhhhhhcCCCcEEEEeCCCCCCCH
Q 025366          185 TFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDDILVGLQHKVVIVDGNYLFLDG  241 (254)
Q Consensus       185 ~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia~al~~~p~vlIlDEp~~~lD~  241 (254)
                      ..+...+.+.+..+..+.....+.|+.-...+..... ....++++|+||++...+.
T Consensus        70 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~iiveg~~~l~~~  125 (213)
T d1uj2a_          70 AFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETV-TVYPADVVLFEGILAFYSQ  125 (213)
T ss_dssp             GBCHHHHHHHHHHHHTTCCEEEEEEETTTTEEEEEEE-EECCCSEEEEECTTTTSSH
T ss_pred             HHHHHHHHhhhhhhhcCCcccccccccccccccCceE-EecccceEEecchhhhccH
Confidence            4555666677777766666666666665555544332 3467899999999999886

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=98.85  E-value=1.8e-10  Score=97.82  Aligned_cols=118  Identities=14%  Similarity=0.107  Sum_probs=72.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHH---HcCC--
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHA---RRGA--  182 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~---~~g~--  182 (254)
                      -||||.|++||||||+.+.|..++.+              ......++.+|+|+.+.......+.......   .+.+  
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~--------------~~v~~~iI~~Dsfyr~~R~~~~~~~~~~~~~~~~~~~~~~   70 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRR--------------EGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFS   70 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHH--------------HTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhh--------------cCCCeEEEeCCCCCccchhhhhhhhhhhhhhhccCCCCCC
Confidence            38999999999999999999888741              1112346899998754311000000011111   1222  


Q ss_pred             CCCccHHHHHHHHHhhccCCCCCCCCCChhhhhhHhhh---------hhhcCCCcEEEEeCCCCCC
Q 025366          183 PWTFNPLLLLNCLKNLRNQGSVYAPSFDHGVGDPVEDD---------ILVGLQHKVVIVDGNYLFL  239 (254)
Q Consensus       183 ~~~~~~~~~~~~l~~l~l~~~~~~~~lS~G~~qrv~ia---------~al~~~p~vlIlDEp~~~l  239 (254)
                      |.+.+.+.+.+.++.++.+.....+.|++-...+..-.         ..+..+.++||+||.+.+.
T Consensus        71 P~A~d~dlL~~~l~~L~~g~~i~~p~Ydh~~~~~~~~~~~~~~~t~~~~~~~~~dvIivEGlh~l~  136 (288)
T d1a7ja_          71 YEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAV  136 (288)
T ss_dssp             GGGBCHHHHHHHHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTC
T ss_pred             cccccHHHHHHHHHHHHCCCcccceeeeeecCcccccccCCCCCCcceeecCCCceEEEechhhcc
Confidence            56778888999999999888888999998766664321         2235667999999999886

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.06  E-value=9.6e-06  Score=65.30  Aligned_cols=32  Identities=19%  Similarity=0.334  Sum_probs=24.7

Q ss_pred             eeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          100 LASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       100 vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +++.-.+..+++++||+|+||||.+--|+-.+
T Consensus         4 l~~~~~~p~vi~lvGptGvGKTTTiAKLAa~~   35 (213)
T d1vmaa2           4 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMF   35 (213)
T ss_dssp             CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CcCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence            34555678899999999999999875555554

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=3.1e-05  Score=62.13  Aligned_cols=63  Identities=19%  Similarity=0.253  Sum_probs=39.9

Q ss_pred             eeeeCCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHc
Q 025366          101 ASNVNVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARR  180 (254)
Q Consensus       101 sl~i~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~  180 (254)
                      +++-+...+++++||+|+||||.+--|+-.+.    .          ......++..|.|..     -..|.++...+..
T Consensus         3 ~~~~~~p~vi~lvGptGvGKTTTiAKLA~~~~----~----------~g~kV~lit~Dt~R~-----gA~eQL~~~a~~l   63 (211)
T d2qy9a2           3 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFE----Q----------QGKSVMLAAGDTFRA-----AAVEQLQVWGQRN   63 (211)
T ss_dssp             CCCSCTTEEEEEECCTTSCHHHHHHHHHHHHH----T----------TTCCEEEECCCTTCH-----HHHHHHHHHHHHT
T ss_pred             CCCCCCCEEEEEECCCCCCHHHHHHHHHHHHH----H----------CCCcEEEEecccccc-----cchhhhhhhhhhc
Confidence            34444568999999999999998866676663    1          222333477776632     2455555555555


Q ss_pred             CC
Q 025366          181 GA  182 (254)
Q Consensus       181 g~  182 (254)
                      ++
T Consensus        64 ~v   65 (211)
T d2qy9a2          64 NI   65 (211)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.89  E-value=3.3e-06  Score=64.17  Aligned_cols=24  Identities=25%  Similarity=0.479  Sum_probs=22.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++|+|++|||||||++.|...+.
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~   27 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALC   27 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHH
Confidence            799999999999999999998773

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.86  E-value=4.6e-06  Score=63.64  Aligned_cols=28  Identities=21%  Similarity=0.269  Sum_probs=25.6

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+|.+|.|+|++||||||+.+.|+-.+.
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~   31 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLN   31 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence            4699999999999999999999998773

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.85  E-value=5.1e-06  Score=63.33  Aligned_cols=28  Identities=39%  Similarity=0.617  Sum_probs=25.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.+.++.|.|++||||||+.+.|+..+.
T Consensus         4 ~~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           4 HDHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4689999999999999999999999873

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.82  E-value=5.8e-06  Score=67.60  Aligned_cols=33  Identities=21%  Similarity=0.272  Sum_probs=26.0

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++++++- ...++.|.|||.+||||+||.++-..
T Consensus        33 Ndi~l~~-~~~~~iiTGpN~~GKSt~lk~i~l~~   65 (234)
T d1wb9a2          33 NPLNLSP-QRRMLIITGPNMGGKSTYMRQTALIA   65 (234)
T ss_dssp             EEEEECS-SSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eeEEECC-CceEEEEeccCchhhHHHHHHHHHHH
Confidence            5665543 35789999999999999999986554

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.82  E-value=4.9e-06  Score=63.57  Aligned_cols=26  Identities=38%  Similarity=0.529  Sum_probs=24.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .|+++.|.||+||||||+.+.|+..+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999998766

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=97.81  E-value=6.4e-05  Score=60.19  Aligned_cols=59  Identities=22%  Similarity=0.318  Sum_probs=33.6

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~  182 (254)
                      +...++.++||+|+||||.+--|+-.+.    ..         ...++ ++..|-|..     -..+.++......++
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~----~~---------g~kV~-lit~Dt~R~-----ga~eQL~~~a~~l~v   68 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYK----KK---------GFKVG-LVGADVYRP-----AALEQLQQLGQQIGV   68 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHH----HT---------TCCEE-EEECCCSSH-----HHHHHHHHHHHHHTC
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHH----HC---------CCceE-EEEeecccc-----chhHHHHHhccccCc
Confidence            4578999999999999998766666553    11         12334 578877632     344555554555554

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.79  E-value=5.5e-06  Score=64.52  Aligned_cols=25  Identities=40%  Similarity=0.597  Sum_probs=23.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |.++.|+||||||||||++.|....
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~   26 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERI   26 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhC
Confidence            8899999999999999999998776

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.78  E-value=0.00017  Score=57.43  Aligned_cols=58  Identities=22%  Similarity=0.173  Sum_probs=40.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~  182 (254)
                      ++.+++++||+|+||||.+--|+..+.    ..         ...++ ++..|-|.     .-..|.++...+..++
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~----~~---------g~kV~-lit~Dt~R-----~gA~eQL~~~a~~l~i   62 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ----NL---------GKKVM-FCAGDTFR-----AAGGTQLSEWGKRLSI   62 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHH----TT---------TCCEE-EECCCCSS-----TTHHHHHHHHHHHHTC
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHH----HC---------CCcEE-EEEecccc-----ccchhhHhhcccccCc
Confidence            578999999999999998866776663    11         12334 57887764     2456777666666665

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.72  E-value=9.1e-06  Score=62.15  Aligned_cols=25  Identities=24%  Similarity=0.270  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+++|+|++|||||||++.|...+.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~   26 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAV   26 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            4899999999999999998888774

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=97.72  E-value=6.2e-07  Score=69.77  Aligned_cols=33  Identities=33%  Similarity=0.385  Sum_probs=27.7

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+.+|++.+| +..|+|+|||||||++.+|.-.+
T Consensus        16 ~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~L   48 (222)
T d1qhla_          16 FARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTAL   48 (222)
T ss_dssp             EEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHHH
T ss_pred             eeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence            5666777654 88999999999999999998665

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=97.71  E-value=7e-06  Score=66.66  Aligned_cols=31  Identities=29%  Similarity=0.350  Sum_probs=24.2

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|+.+  . ++++.|.|||.+||||++|.++-..
T Consensus        29 Ndi~~--~-~~~~iiTGpN~~GKSt~lk~i~l~~   59 (224)
T d1ewqa2          29 NDLEM--A-HELVLITGPNMAGKSTFLRQTALIA   59 (224)
T ss_dssp             EEEEE--S-SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred             ceEEe--C-CcEEEEECCCccccchhhhhhHHHH
Confidence            44444  3 4689999999999999999886554

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.69  E-value=1.2e-05  Score=61.10  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=23.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .++|.|.|++||||||+.+.|+..+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            56899999999999999999999883

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.67  E-value=1.1e-05  Score=62.54  Aligned_cols=28  Identities=25%  Similarity=0.510  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ...-+|||.|++|||||||++.|.-.+.
T Consensus        20 ~~~~iIgI~G~~GSGKSTla~~L~~~l~   47 (198)
T d1rz3a_          20 AGRLVLGIDGLSRSGKTTLANQLSQTLR   47 (198)
T ss_dssp             SSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence            3345899999999999999999998774

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.66  E-value=1e-05  Score=61.70  Aligned_cols=25  Identities=40%  Similarity=0.643  Sum_probs=22.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.|.|.||+|+|||||++.++..+.
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~   26 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLK   26 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHH
Confidence            3588999999999999999999985

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.64  E-value=1.3e-05  Score=61.19  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=23.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -..|+|.|++|||||||++.|+..+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36799999999999999999999874

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=97.61  E-value=0.00028  Score=56.20  Aligned_cols=58  Identities=22%  Similarity=0.213  Sum_probs=37.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhcccCCCCceecCCCCCCCCeEEEeeCCCCCCCCcCCChhhcHHHHHHHcCC
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRINKIWPQKASSFDSQVKPPDVATVLPMDGFHLYLSQLDAMEDPKEAHARRGA  182 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~~~~~~~~~~~~g~~i~~~~~~~~~~~l~~~e~~~~~~~~~g~  182 (254)
                      .+.++.++||+|+||||.+--|+..+.    ..|         ..++ ++..|.|..     -..|.+....+..++
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~----~~g---------~kV~-lit~Dt~R~-----gA~eQL~~~a~~l~v   66 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYK----GKG---------RRPL-LVAADTQRP-----AAREQLRLLGEKVGV   66 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHH----HTT---------CCEE-EEECCSSCH-----HHHHHHHHHHHHHTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHH----HCC---------CcEE-EEecccccc-----hHHHHHHHHHHhcCC
Confidence            467899999999999998877776663    111         2334 577776642     344555555555554

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.59  E-value=1.7e-05  Score=59.11  Aligned_cols=23  Identities=43%  Similarity=0.645  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      ++|.|.|++|||||||++.|...
T Consensus         3 klIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            57889999999999999987654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.59  E-value=1.9e-05  Score=59.68  Aligned_cols=25  Identities=28%  Similarity=0.586  Sum_probs=22.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .++.|.||+||||||+++.|+..+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5789999999999999999998873

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.58  E-value=2e-05  Score=59.94  Aligned_cols=27  Identities=22%  Similarity=0.454  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++|-.|.|.||+||||||+.+.|+-.+
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~l   29 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAEL   29 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence            457789999999999999999999876

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=1.2e-05  Score=62.49  Aligned_cols=27  Identities=30%  Similarity=0.345  Sum_probs=24.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +|.+|.|+|++||||||+.+.|+-.+.
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~   44 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLV   44 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999998774

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.57  E-value=2.2e-05  Score=60.09  Aligned_cols=25  Identities=24%  Similarity=0.492  Sum_probs=23.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+|+|.|++||||||+++.|+-.+.
T Consensus         2 kiI~i~G~~GsGKsT~~~~L~~~l~   26 (190)
T d1khta_           2 KVVVVTGVPGVGSTTSSQLAMDNLR   26 (190)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHH
Confidence            6899999999999999999998774

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.53  E-value=2.3e-05  Score=58.43  Aligned_cols=24  Identities=42%  Similarity=0.700  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .|.|+||+||||||+.+.|+-.+.
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            577889999999999999999874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.52  E-value=3.6e-05  Score=64.18  Aligned_cols=48  Identities=15%  Similarity=0.006  Sum_probs=39.5

Q ss_pred             CCCCChhhhhhHhhhhh----hcCCCcEEEEeCCCCCCCHHHHHHHHHHhhc
Q 025366          206 APSFDHGVGDPVEDDIL----VGLQHKVVIVDGNYLFLDGGVWKDVSSMFDE  253 (254)
Q Consensus       206 ~~~lS~G~~qrv~ia~a----l~~~p~vlIlDEp~~~lD~~~~~~l~~ll~~  253 (254)
                      ...+|.|+++...++..    ....+.++++|||-+.|+|.....+.+++.+
T Consensus       217 ~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~  268 (308)
T d1e69a_         217 LSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKE  268 (308)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHH
T ss_pred             hhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHH
Confidence            44678999998766543    4667799999999999999999999998864

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=2.8e-05  Score=62.01  Aligned_cols=26  Identities=27%  Similarity=0.455  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|.++.|+||+|+|||||++.|.-..
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            58999999999999999999988765

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.49  E-value=2.5e-05  Score=59.16  Aligned_cols=23  Identities=39%  Similarity=0.707  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHhhc
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.|+||+||||||+++.|+-.+.
T Consensus         7 I~i~G~pGsGKTTia~~La~~l~   29 (173)
T d1rkba_           7 ILLTGTPGVGKTTLGKELASKSG   29 (173)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            56999999999999999988763

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.45  E-value=6.5e-05  Score=60.17  Aligned_cols=23  Identities=43%  Similarity=0.666  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +++|+|+.|||||||++.|....
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~   24 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYL   24 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHH
Confidence            78999999999999999998765

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.44  E-value=3.5e-05  Score=60.16  Aligned_cols=28  Identities=36%  Similarity=0.586  Sum_probs=24.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+..+|.|+||+||||||+++.|+-.+.
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~~g   31 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRDFG   31 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHC
Confidence            3567999999999999999999988663

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=5.3e-05  Score=59.21  Aligned_cols=28  Identities=29%  Similarity=0.508  Sum_probs=24.6

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++-.++.|+||.||||||+++.|+..+.
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~~g   33 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKDYS   33 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            4566899999999999999999998774

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.30  E-value=4.9e-05  Score=59.45  Aligned_cols=29  Identities=28%  Similarity=0.563  Sum_probs=25.8

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.++.++.|+||+||||||+++.|+-.+.
T Consensus         5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~g   33 (194)
T d3adka_           5 LKKSKIIFVVGGPGSGKGTQCEKIVQKYG   33 (194)
T ss_dssp             HHTSCEEEEEECTTSSHHHHHHHHHHHTC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45688999999999999999999998764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=7.4e-05  Score=64.60  Aligned_cols=46  Identities=11%  Similarity=0.020  Sum_probs=38.6

Q ss_pred             CCCChhhhhhHhhhhhh----cCCCcEEEEeCCCCCCCHHHHHHHHHHhh
Q 025366          207 PSFDHGVGDPVEDDILV----GLQHKVVIVDGNYLFLDGGVWKDVSSMFD  252 (254)
Q Consensus       207 ~~lS~G~~qrv~ia~al----~~~p~vlIlDEp~~~lD~~~~~~l~~ll~  252 (254)
                      ..+||||+.++++|..+    ..+++++|||||+++||+..+..+.++|+
T Consensus       331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~  380 (427)
T d1w1wa_         331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIR  380 (427)
T ss_dssp             GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHH
T ss_pred             hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHH
Confidence            34699999998766432    56778999999999999999999999885

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.28  E-value=7.3e-05  Score=60.82  Aligned_cols=30  Identities=27%  Similarity=0.496  Sum_probs=25.6

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..+....+.|.||+|||||||++.|++.+.
T Consensus        28 ~~~~P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          28 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CCSSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            344567799999999999999999999873

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.28  E-value=7.1e-05  Score=57.33  Aligned_cols=25  Identities=40%  Similarity=0.546  Sum_probs=22.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .++.|.|++||||||+++.|+..+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~   26 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4788999999999999999999883

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.25  E-value=5.4e-05  Score=61.21  Aligned_cols=27  Identities=30%  Similarity=0.432  Sum_probs=24.2

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +|+..+++|+||+|||||++.|.+-..
T Consensus        94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~  120 (225)
T d1u0la2          94 KGKISTMAGLSGVGKSSLLNAINPGLK  120 (225)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred             cCCeEEEECCCCCCHHHHHHhhcchhh
Confidence            589999999999999999999987653

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.0015  Score=53.02  Aligned_cols=26  Identities=38%  Similarity=0.560  Sum_probs=23.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|+++.|.|+.|+|||||+--|+..+
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~i   53 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQI   53 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            59999999999999999998887665

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.21  E-value=9.2e-05  Score=56.28  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=21.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHhhc
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.|+|++||||||+.+.|+..+.
T Consensus         3 I~liG~~GsGKsTi~k~La~~l~   25 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDLD   25 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            67889999999999999999884

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.21  E-value=5.7e-05  Score=58.95  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .|+|+|+.|+|||||++.|.|.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999985

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.19  E-value=8.6e-05  Score=57.84  Aligned_cols=22  Identities=36%  Similarity=0.676  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |.|+||+|||||||++.|+...
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~~   25 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999998775

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.19  E-value=0.00011  Score=57.03  Aligned_cols=26  Identities=38%  Similarity=0.566  Sum_probs=22.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|-.+.|+||.||||||+.+.|+-.+
T Consensus         2 ~~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           2 KGVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CccEEEEECCCCCCHHHHHHHHHHHh
Confidence            56677799999999999999999665

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.18  E-value=9.3e-05  Score=57.11  Aligned_cols=29  Identities=34%  Similarity=0.347  Sum_probs=23.8

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .-+..+++.++|++||||||+++.++-..
T Consensus        10 ~~~~p~liil~G~pGsGKST~a~~l~~~~   38 (172)
T d1yj5a2          10 LSPNPEVVVAVGFPGAGKSTFIQEHLVSA   38 (172)
T ss_dssp             SCSSCCEEEEECCTTSSHHHHHHHHTGGG
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            34567899999999999999998775443

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.0001  Score=57.33  Aligned_cols=25  Identities=40%  Similarity=0.604  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -+|.|+||.||||||.++.|+-.+.
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~g   26 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKYG   26 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3789999999999999999998764

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.15  E-value=0.00019  Score=61.85  Aligned_cols=28  Identities=21%  Similarity=0.440  Sum_probs=23.0

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      +.+..+.+.+|+|+|||||||++.+|+=
T Consensus        20 i~f~~~~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          20 VGFGESNFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             EECTTCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCCCHHHHHHHHHH
Confidence            3345456899999999999999999963

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00013  Score=57.57  Aligned_cols=32  Identities=25%  Similarity=0.490  Sum_probs=26.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      ||+|.||+||||||+.+.|+.-+.-..-+.|.
T Consensus         5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGd   36 (225)
T d1ckea_           5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGA   36 (225)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhCCcEECHHH
Confidence            89999999999999999999988632333454

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.13  E-value=8.4e-05  Score=57.75  Aligned_cols=24  Identities=25%  Similarity=0.425  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++.|+||.||||||+++.|+--+.
T Consensus         5 ~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           5 KVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             CEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            577999999999999999998874

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.13  E-value=0.00013  Score=56.64  Aligned_cols=24  Identities=17%  Similarity=0.415  Sum_probs=21.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ..+.|+||+|+|||||++.|....
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999988765

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.13  E-value=0.00011  Score=57.50  Aligned_cols=22  Identities=50%  Similarity=0.735  Sum_probs=20.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |.|+||+|||||||++.|.-..
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~   24 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEH   24 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhC
Confidence            6799999999999999998765

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.12  E-value=0.00014  Score=56.85  Aligned_cols=25  Identities=24%  Similarity=0.566  Sum_probs=22.5

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -+|.++|.+|||||||++.|+..+.
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~   27 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLN   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            5789999999999999999998763

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.11  E-value=0.00011  Score=57.15  Aligned_cols=23  Identities=43%  Similarity=0.624  Sum_probs=20.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      .-|+||.|+.||||||+++.|.-
T Consensus         3 p~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999998854

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.10  E-value=0.00013  Score=57.86  Aligned_cols=24  Identities=29%  Similarity=0.595  Sum_probs=22.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +|+|.||+||||||.++.|+--+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            678999999999999999999885

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.10  E-value=0.00014  Score=55.57  Aligned_cols=24  Identities=25%  Similarity=0.487  Sum_probs=21.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.|+|++||||||+.+.|+-.+.
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhC
Confidence            356889999999999999998874

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.08  E-value=0.00014  Score=55.66  Aligned_cols=23  Identities=43%  Similarity=0.615  Sum_probs=20.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHhhc
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.|+||.||||||+.+.|+-.+.
T Consensus         3 I~i~G~pGSGKsT~a~~La~~~~   25 (182)
T d1zina1           3 LVLMGLPGAGKGTQAEKIVAAYG   25 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHC
Confidence            67999999999999999988774

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.06  E-value=0.00015  Score=55.00  Aligned_cols=23  Identities=35%  Similarity=0.657  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHhhc
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.|+|++||||||+.+.|+..+.
T Consensus         4 IvliG~~G~GKSTig~~La~~l~   26 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKALG   26 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            44679999999999999999884

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.03  E-value=0.00011  Score=57.17  Aligned_cols=27  Identities=22%  Similarity=0.249  Sum_probs=23.9

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++-+|+|-|+.||||||+++.|...+
T Consensus         7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l   33 (197)
T d2vp4a1           7 TQPFTVLIEGNIGSGKTTYLNHFEKYK   33 (197)
T ss_dssp             CCCEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence            346799999999999999999998876

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.03  E-value=0.00015  Score=55.35  Aligned_cols=22  Identities=32%  Similarity=0.661  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      +|+|+|.+++|||||++.|.|.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.03  E-value=0.00022  Score=56.72  Aligned_cols=30  Identities=30%  Similarity=0.340  Sum_probs=25.8

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.-++|.+|-|.|.+||||||+.+.|.-.+
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l   48 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQL   48 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            334679999999999999999999998655

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.02  E-value=0.00017  Score=55.49  Aligned_cols=24  Identities=42%  Similarity=0.613  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .|.|+||.||||||+++.|+-.+.
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~g   25 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKYG   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            467999999999999999998874

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.01  E-value=0.00018  Score=53.33  Aligned_cols=22  Identities=27%  Similarity=0.246  Sum_probs=19.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++|+|++|+|||||++.|.+-.
T Consensus         3 I~liG~~nvGKSSLln~l~~~~   24 (166)
T d2qtvb1           3 LLFLGLDNAGKTTLLHMLKNDR   24 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            6799999999999999998853

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.00016  Score=54.20  Aligned_cols=25  Identities=40%  Similarity=0.478  Sum_probs=22.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |--|+|+|+.++|||||++.|+|.-
T Consensus         1 ~~kI~lvG~~nvGKSsLin~l~~~~   25 (161)
T d2gj8a1           1 GMKVVIAGRPNAGKSSLLNALAGRE   25 (161)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4568999999999999999999864

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.00  E-value=0.00019  Score=53.28  Aligned_cols=22  Identities=23%  Similarity=0.255  Sum_probs=19.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |.|+|++|+|||||++.+.+-.
T Consensus         3 ivlvG~~~vGKSsLi~~l~~~~   24 (160)
T d1r8sa_           3 ILMVGLDAAGKTTILYKLKLGE   24 (160)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHhcCC
Confidence            6799999999999999998764

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.0002  Score=55.31  Aligned_cols=28  Identities=14%  Similarity=0.247  Sum_probs=25.3

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.+|+++.|.||+|+|||||+-.++...
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7789999999999999999998887654

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.98  E-value=0.00016  Score=55.04  Aligned_cols=23  Identities=39%  Similarity=0.590  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .|+|+|+.|+|||||++.|+|..
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999998754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.98  E-value=0.00017  Score=55.25  Aligned_cols=23  Identities=35%  Similarity=0.556  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|+|+|..|+|||||++.|+|.-
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            79999999999999999999863

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.97  E-value=0.00012  Score=56.02  Aligned_cols=23  Identities=30%  Similarity=0.382  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -|+|+|++|+|||||++.|.|..
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~   24 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK   24 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999999854

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.97  E-value=0.00021  Score=55.75  Aligned_cols=23  Identities=26%  Similarity=0.442  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .|+|+|+.|||||||++.|.+-.
T Consensus         5 ~V~lvG~~n~GKTSLln~l~~~~   27 (209)
T d1nrjb_           5 SIIIAGPQNSGKTSLLTLLTTDS   27 (209)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            68999999999999999999864

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.96  E-value=0.00021  Score=53.35  Aligned_cols=23  Identities=26%  Similarity=0.273  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|.+|+|||||++.+.+-.
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~~   29 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVGE   29 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            38899999999999999998764

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.94  E-value=0.00021  Score=54.94  Aligned_cols=24  Identities=46%  Similarity=0.739  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.|+||.||||||+.+.|+--+.
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~g   25 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKLG   25 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHC
Confidence            368999999999999999998774

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.93  E-value=8.5e-05  Score=57.33  Aligned_cols=22  Identities=50%  Similarity=0.622  Sum_probs=19.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |||+|+.++|||||++.|+|..
T Consensus         4 VaiiG~~nvGKSSLin~L~~~~   25 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSSAK   25 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEEEC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999997754

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.00027  Score=56.14  Aligned_cols=28  Identities=29%  Similarity=0.348  Sum_probs=25.3

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++|.+|+|-|+-||||||+++.|...+.
T Consensus         1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~   28 (209)
T d1nn5a_           1 RRGALIVLEGVDRAGKSTQSRKLVEALC   28 (209)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4689999999999999999999998773

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.00027  Score=55.74  Aligned_cols=27  Identities=30%  Similarity=0.420  Sum_probs=24.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +|.+|+|-|+.||||||+++.|...+.
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~   27 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLE   27 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence            588999999999999999999998763

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.00026  Score=54.38  Aligned_cols=25  Identities=32%  Similarity=0.494  Sum_probs=21.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +--|||+|..|+|||||++.|+|.-
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Confidence            4468999999999999999998753

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00023  Score=54.55  Aligned_cols=24  Identities=33%  Similarity=0.411  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.|+||.||||||..+.|+-.+.
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~~   25 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKYG   25 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            367899999999999999987763

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.87  E-value=6.3e-05  Score=61.02  Aligned_cols=27  Identities=26%  Similarity=0.426  Sum_probs=22.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +|....++|+||+|||||++.|.+-..
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~  122 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELG  122 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC---
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhH
Confidence            578889999999999999999988653

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.83  E-value=0.00029  Score=54.97  Aligned_cols=25  Identities=24%  Similarity=0.614  Sum_probs=21.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -.+.|+||.||||||+.+.|+--+.
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~g   31 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHFE   31 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHBC
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHHC
Confidence            3577999999999999999998763

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.80  E-value=0.00031  Score=55.38  Aligned_cols=21  Identities=48%  Similarity=0.675  Sum_probs=19.1

Q ss_pred             eEEEEECCCCCcHHHHHHHHH
Q 025366          108 HIVGLAGPPGAGKSTLAAEVV  128 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~  128 (254)
                      .++||.|..||||||+++++.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            489999999999999999875

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.00014  Score=55.88  Aligned_cols=22  Identities=55%  Similarity=0.761  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |||+|..++|||||++.|+|..
T Consensus         4 VaivG~~nvGKSTLin~L~~~~   25 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRAH   25 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSSC
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999998754

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.79  E-value=0.00036  Score=53.62  Aligned_cols=23  Identities=48%  Similarity=0.791  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHhhc
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.|+||.||||||+++.|+-.+.
T Consensus         5 Ivl~G~pGSGKtT~a~~La~~~g   27 (180)
T d1akya1           5 MVLIGPPGAGKGTQAPNLQERFH   27 (180)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHhC
Confidence            56889999999999999998773

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.75  E-value=0.00021  Score=54.18  Aligned_cols=24  Identities=25%  Similarity=0.184  Sum_probs=20.2

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.++|+|++|||||||++.|.+-.
T Consensus        14 ~kI~lvG~~~vGKTsLl~~l~~~~   37 (186)
T d1f6ba_          14 GKLVFLGLDNAGKTTLLHMLKDDR   37 (186)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            357899999999999999987653

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00049  Score=58.53  Aligned_cols=27  Identities=33%  Similarity=0.484  Sum_probs=24.4

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+.-+|||.|++|||||||+..|...+
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~   78 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLL   78 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999998877

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.70  E-value=0.00053  Score=55.15  Aligned_cols=26  Identities=38%  Similarity=0.546  Sum_probs=23.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ...+.|.||+|+||||++++|+..+.
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~   77 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELG   77 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            34788999999999999999999874

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.69  E-value=0.00049  Score=54.31  Aligned_cols=23  Identities=43%  Similarity=0.530  Sum_probs=20.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .+|||.|..||||||.++++..+
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            48999999999999999988643

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00023  Score=56.79  Aligned_cols=26  Identities=23%  Similarity=0.240  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++.+|+|-|+-||||||+++.|+..+
T Consensus         1 ~~k~I~ieG~dGsGKST~~~~L~~~l   26 (241)
T d1p5zb_           1 RIKKISIEGNIAAGKSTFVNILKQLC   26 (241)
T ss_dssp             CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence            36799999999999999999999877

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.68  E-value=0.00051  Score=54.57  Aligned_cols=27  Identities=15%  Similarity=0.302  Sum_probs=25.0

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +|.+|+|-|+-||||||+++.|+-.+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            699999999999999999999998873

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.66  E-value=0.00049  Score=54.78  Aligned_cols=23  Identities=43%  Similarity=0.749  Sum_probs=20.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+.|.||+|+||||++++|+..+
T Consensus        47 ~lll~Gp~G~GKTtla~~iak~l   69 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAREL   69 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHHH
Confidence            47899999999999999999876

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.64  E-value=0.00034  Score=52.63  Aligned_cols=23  Identities=22%  Similarity=0.186  Sum_probs=20.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|+.|+|||||++.|.+..
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~~~   26 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNGED   26 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTCC
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC
Confidence            47899999999999999988754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.62  E-value=0.00054  Score=54.75  Aligned_cols=24  Identities=50%  Similarity=0.750  Sum_probs=21.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.+.||+|+||||++++|+..+.
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~~~~   60 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIASELQ   60 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCcHHHHHHHHHhccC
Confidence            477999999999999999999884

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.61  E-value=0.00059  Score=53.36  Aligned_cols=23  Identities=22%  Similarity=0.225  Sum_probs=20.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -|+|+|+.|+|||||++.|.+-.
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~   24 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQ   24 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            58999999999999999998743

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.60  E-value=0.00057  Score=54.70  Aligned_cols=24  Identities=42%  Similarity=0.681  Sum_probs=21.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -+.+.||.|+||||+++++++.+.
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~~~~   60 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAHELG   60 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHHHhC
Confidence            467999999999999999999874

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.56  E-value=0.00059  Score=57.37  Aligned_cols=27  Identities=26%  Similarity=0.501  Sum_probs=23.3

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++.-+.+.||+|+|||+|+|.|+..+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc
Confidence            345667899999999999999999874

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.53  E-value=0.00017  Score=53.94  Aligned_cols=22  Identities=32%  Similarity=0.504  Sum_probs=20.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |+|+|..++|||||++.|+|.-
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7999999999999999999974

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.52  E-value=0.00082  Score=51.01  Aligned_cols=30  Identities=33%  Similarity=0.460  Sum_probs=26.9

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..++|.+++|-|+=|||||||.|.++.-+.
T Consensus        29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg   58 (158)
T d1htwa_          29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIG   58 (158)
T ss_dssp             CCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cCCCCeEEEEecCCCccHHHHHHHHHhhcc
Confidence            457899999999999999999999988773

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.51  E-value=0.00071  Score=50.89  Aligned_cols=23  Identities=22%  Similarity=0.250  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|++|+|||||++.+.+-.
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~~~   26 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIASGQ   26 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHcCC
Confidence            36799999999999999887643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.51  E-value=0.0078  Score=50.38  Aligned_cols=26  Identities=23%  Similarity=0.484  Sum_probs=23.1

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .-.+.++||+|+|||.|++.|+..+.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhcc
Confidence            34788999999999999999999883

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.50  E-value=0.0002  Score=54.57  Aligned_cols=25  Identities=28%  Similarity=0.314  Sum_probs=21.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .-.|+|+|+.++|||||++.|.+.-
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~~   40 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQK   40 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC
Confidence            4569999999999999999997753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.48  E-value=0.00074  Score=53.61  Aligned_cols=22  Identities=27%  Similarity=0.655  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.|.||+|+||||++++++..+
T Consensus        36 lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHHHH
Confidence            7799999999999999999875

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.0006  Score=53.96  Aligned_cols=26  Identities=31%  Similarity=0.326  Sum_probs=23.2

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      +++|+++.|.|++|||||||+--++-
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~~   56 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLAV   56 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence            78999999999999999999876653

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.46  E-value=0.00075  Score=50.99  Aligned_cols=26  Identities=27%  Similarity=0.280  Sum_probs=21.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.-.++|+|.+|||||||++.|.+-.
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~   39 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNE   39 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCC
Confidence            34468899999999999999998753

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.44  E-value=0.00091  Score=52.08  Aligned_cols=23  Identities=30%  Similarity=0.579  Sum_probs=21.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|+|-|.-||||||+++.|...+
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l   24 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAF   24 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            68899999999999999999877

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.43  E-value=0.00063  Score=52.24  Aligned_cols=22  Identities=27%  Similarity=0.406  Sum_probs=20.2

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |+|+|...||||||++.|++.-
T Consensus         8 IaiiG~~naGKSTL~n~L~~~~   29 (179)
T d1wb1a4           8 LGIFGHIDHGKTTLSKVLTEIA   29 (179)
T ss_dssp             EEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEeCCCCcHHHHHHHHHHhc
Confidence            8999999999999999998753

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.40  E-value=0.0011  Score=54.22  Aligned_cols=29  Identities=31%  Similarity=0.525  Sum_probs=24.2

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +....-+.|.||+|+|||++++.|+..+.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            33456678999999999999999999874

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0012  Score=52.60  Aligned_cols=28  Identities=18%  Similarity=0.215  Sum_probs=24.8

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -+++|.++.|.|++|||||||+-.++..
T Consensus        33 Gip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          33 GIESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            3889999999999999999999877754

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.37  E-value=0.00098  Score=50.47  Aligned_cols=21  Identities=33%  Similarity=0.501  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      ++|+|+.|+|||||++.+.+-
T Consensus         5 i~~vG~~~vGKSsLi~~~~~~   25 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVND   25 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999998764

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.36  E-value=0.00064  Score=57.64  Aligned_cols=29  Identities=24%  Similarity=0.397  Sum_probs=25.3

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++.+.-+.|.|+.|||||||++.|++.++
T Consensus       163 v~~~~nili~G~tgSGKTT~l~al~~~i~  191 (323)
T d1g6oa_         163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIP  191 (323)
T ss_dssp             HHHTCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred             HHhCCCEEEEeeccccchHHHHHHhhhcc
Confidence            45566789999999999999999999884

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.35  E-value=0.001  Score=50.33  Aligned_cols=21  Identities=14%  Similarity=0.278  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      ++++|..|+|||||++.+.+-
T Consensus         8 i~vvG~~~vGKTsLi~~l~~~   28 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYADD   28 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHcC
Confidence            789999999999999988764

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.33  E-value=0.00071  Score=55.31  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .++|+|.+|+|||||+|.|.|..
T Consensus        34 ~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          34 TILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCC
Confidence            58899999999999999999965

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.00097  Score=50.20  Aligned_cols=22  Identities=27%  Similarity=0.533  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -++|+|++|+|||||++.+.+-
T Consensus         5 Ki~viG~~~vGKTsli~~l~~~   26 (166)
T d1ctqa_           5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4899999999999999988774

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.31  E-value=0.0014  Score=55.56  Aligned_cols=27  Identities=33%  Similarity=0.457  Sum_probs=23.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+.-++||.|+.|||||||+..|...+
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~   75 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLL   75 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHH
Confidence            456789999999999999999988765

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.31  E-value=0.0011  Score=50.41  Aligned_cols=22  Identities=41%  Similarity=0.548  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -++|+|+.|+|||||++.+.+-
T Consensus         6 Ki~vvG~~~vGKTsLi~~~~~~   27 (175)
T d2f9la1           6 KVVLIGDSGVGKSNLLSRFTRN   27 (175)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.29  E-value=0.0012  Score=52.83  Aligned_cols=23  Identities=30%  Similarity=0.395  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|+|+|...||||||++.|.+..
T Consensus         7 ~IaIiGh~d~GKSTL~~~L~~~~   29 (227)
T d1g7sa4           7 IVSVLGHVDHGKTTLLDHIRGSA   29 (227)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEEeCCCccHHHHHHHHHhhc
Confidence            59999999999999999998864

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.28  E-value=0.0011  Score=53.83  Aligned_cols=26  Identities=42%  Similarity=0.597  Sum_probs=22.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..-+.|.||.|||||++++.|+....
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccc
Confidence            34578999999999999999999874

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.25  E-value=0.0012  Score=49.50  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=18.5

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      ++|+|+.|+|||||++.+.+-
T Consensus         5 v~liG~~~vGKSsLi~rl~~~   25 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCKG   25 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999877753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.24  E-value=0.0012  Score=52.59  Aligned_cols=26  Identities=27%  Similarity=0.438  Sum_probs=22.8

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      +++|+++.|.|++|||||||+--++-
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~   58 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAV   58 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHH
Confidence            78899999999999999999865543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.24  E-value=0.0012  Score=52.99  Aligned_cols=26  Identities=19%  Similarity=0.199  Sum_probs=23.1

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+.++.|.||.|+|||||++.++...
T Consensus        28 ~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          28 RAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            46789999999999999999887766

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0013  Score=52.05  Aligned_cols=22  Identities=27%  Similarity=0.490  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.|.||+|+||||++++++..+
T Consensus        39 ~ll~Gp~G~GKTt~a~~la~~l   60 (224)
T d1sxjb2          39 MIISGMPGIGKTTSVHCLAHEL   60 (224)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCchhhHHHHHHHH
Confidence            6789999999999999998876

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.18  E-value=0.0014  Score=53.70  Aligned_cols=30  Identities=30%  Similarity=0.491  Sum_probs=25.2

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+....-+.|.||+|+|||+|++.|++.+.
T Consensus        37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~   66 (265)
T d1r7ra3          37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ   66 (265)
T ss_dssp             CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence            344556688999999999999999999874

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.17  E-value=0.0014  Score=52.19  Aligned_cols=28  Identities=25%  Similarity=0.369  Sum_probs=24.5

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +++|.++.|.|++|+|||||+.-++-..
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~   50 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENA   50 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7789999999999999999987666554

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.17  E-value=0.0014  Score=51.50  Aligned_cols=25  Identities=16%  Similarity=0.407  Sum_probs=22.2

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHH
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVV  128 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~  128 (254)
                      +++|+++.|.|++|+|||||+--++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            7899999999999999999985443

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.15  E-value=0.0015  Score=51.55  Aligned_cols=28  Identities=18%  Similarity=0.392  Sum_probs=24.8

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.+|+++.|.|++|+|||||+--++-..
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            7889999999999999999987776554

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=96.14  E-value=0.0046  Score=50.78  Aligned_cols=30  Identities=30%  Similarity=0.499  Sum_probs=26.3

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -++.|.|+-|.||+|||||||+-.++....
T Consensus        53 Gip~g~itei~G~~~sGKT~l~l~~~~~aq   82 (268)
T d1xp8a1          53 GIPRGRITEIYGPESGGKTTLALAIVAQAQ   82 (268)
T ss_dssp             SEETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCccchHHHHHHHHHHHH
Confidence            367899999999999999999988887764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0016  Score=49.35  Aligned_cols=21  Identities=29%  Similarity=0.420  Sum_probs=18.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      +.|+|++|+|||||++.+.+-
T Consensus         6 ivvvG~~~vGKTsli~r~~~~   26 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTDK   26 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHhcC
Confidence            779999999999999987764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.09  E-value=0.0015  Score=49.10  Aligned_cols=21  Identities=38%  Similarity=0.529  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      ++++|.+|+|||||++.+.+-
T Consensus         5 i~vvG~~~vGKTSli~~l~~~   25 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVED   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988764

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.09  E-value=0.0051  Score=50.50  Aligned_cols=29  Identities=24%  Similarity=0.456  Sum_probs=24.8

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++.|.++-|.||+|+|||||+-.++...
T Consensus        56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~   84 (269)
T d1mo6a1          56 GLPRGRVIEIYGPESSGKTTVALHAVANA   84 (269)
T ss_dssp             SBCSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             CcccceeEEEecCCCcHHHHHHHHHHHHH
Confidence            47889999999999999999986666554

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.09  E-value=0.002  Score=51.47  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=23.3

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ...+.|.||.|+||||+++.|+..+.
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~   68 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYK   68 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHh
Confidence            45788999999999999999999884

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.09  E-value=0.0015  Score=49.33  Aligned_cols=23  Identities=26%  Similarity=0.414  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      --+.|+|.+|+|||||++.+.+-
T Consensus         6 ~Ki~lvG~~~vGKTsLi~r~~~~   28 (171)
T d2erya1           6 YRLVVVGGGGVGKSALTIQFIQS   28 (171)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35899999999999999987763

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0015  Score=49.11  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=19.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .-|+|+|+.|+|||||++.+.+-
T Consensus         5 ~Kv~liG~~~vGKTsLl~~~~~~   27 (167)
T d1xtqa1           5 RKIAILGYRSVGKSSLTIQFVEG   27 (167)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCcCHHHHHHHHHhC
Confidence            35889999999999999988753

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.08  E-value=0.0013  Score=53.57  Aligned_cols=35  Identities=14%  Similarity=0.168  Sum_probs=28.3

Q ss_pred             cccceeeeeCCCeEEEEECCCCCcHHHHHHHHHHh
Q 025366           96 PTSALASNVNVKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus        96 al~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .|+++..-+.+|+++.|.|++|+|||||+.-|+-.
T Consensus        24 ~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             THHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             hHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence            34555445889999999999999999998777753

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.06  E-value=0.0017  Score=52.72  Aligned_cols=25  Identities=44%  Similarity=0.626  Sum_probs=22.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .-+.|.||.|+|||+|++.|+..+.
T Consensus        43 ~giLl~GppGtGKT~la~aia~~~~   67 (247)
T d1ixza_          43 KGVLLVGPPGVGKTHLARAVAGEAR   67 (247)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEecCCCCChhHHHHHHHHHcC
Confidence            4578999999999999999999874

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0018  Score=48.56  Aligned_cols=22  Identities=36%  Similarity=0.486  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -+.|+|..|+|||||++.+.+-
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~~   26 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVTG   26 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=96.03  E-value=0.00089  Score=50.70  Aligned_cols=23  Identities=30%  Similarity=0.342  Sum_probs=19.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      --++|+|+.|+|||||++.+.+-
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~~   39 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLASE   39 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCCS
T ss_pred             EEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999988653

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.02  E-value=0.0022  Score=49.19  Aligned_cols=31  Identities=29%  Similarity=0.274  Sum_probs=24.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      -+.|+|.+|+|||||++.+. ......|+.|-
T Consensus         4 KivllG~~~vGKTsll~r~~-f~~~~~pTiG~   34 (200)
T d1zcba2           4 KILLLGAGESGKSTFLKQMR-IIHGQDPTKGI   34 (200)
T ss_dssp             EEEEECSTTSSHHHHHHHHH-HHHSCCCCSSE
T ss_pred             EEEEECCCCCCHHHHHHHHh-cCCCCCCeeee
Confidence            47899999999999999994 44445688884

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.01  E-value=0.0019  Score=49.38  Aligned_cols=21  Identities=33%  Similarity=0.577  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      |+|+|..|+|||||++.+.+-
T Consensus         5 v~vvG~~~vGKSSLi~~l~~~   25 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVNK   25 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988763

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0016  Score=49.12  Aligned_cols=21  Identities=38%  Similarity=0.572  Sum_probs=18.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025366          109 IVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~G  129 (254)
                      -++|+|..|+|||||++.+.+
T Consensus         4 Ki~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           4 RVAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999988765

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.00  E-value=0.002  Score=48.45  Aligned_cols=22  Identities=36%  Similarity=0.468  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -++|+|..|+|||||++.+..-
T Consensus         6 Ki~lvG~~~vGKTsli~rl~~~   27 (167)
T d1z0ja1           6 KVCLLGDTGVGKSSIMWRFVED   27 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999988753

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0019  Score=49.40  Aligned_cols=20  Identities=25%  Similarity=0.325  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 025366          110 VGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~G  129 (254)
                      ++|+|+.|+|||||++.+.+
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999988875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0018  Score=48.83  Aligned_cols=22  Identities=27%  Similarity=0.439  Sum_probs=19.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .+.|+|..|+|||||++.+.+-
T Consensus         7 Ki~lvG~~~vGKTsLi~~l~~~   28 (171)
T d2ew1a1           7 KIVLIGNAGVGKTCLVRRFTQG   28 (171)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988864

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0019  Score=48.30  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=19.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -|+|+|..|+|||||++.+.+-
T Consensus         2 Kv~vvG~~~vGKTsLi~r~~~~   23 (164)
T d1yzqa1           2 KLVFLGEQSVGKTSLITRFMYD   23 (164)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999988764

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=95.94  E-value=0.0022  Score=51.15  Aligned_cols=24  Identities=25%  Similarity=0.342  Sum_probs=21.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+|||.|+-||||||+++.|...+
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~~   25 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSNY   25 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            489999999999999999996543

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.0027  Score=51.71  Aligned_cols=26  Identities=35%  Similarity=0.560  Sum_probs=22.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..-+.|.||+|+|||+|++.++....
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CceeEEecCCCCCchHHHHHHHHHhC
Confidence            34478999999999999999999763

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0022  Score=48.17  Aligned_cols=22  Identities=27%  Similarity=0.348  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -+.|+|.+|+|||||++.+.+-
T Consensus         6 KivlvG~~~vGKTsli~~~~~~   27 (166)
T d1z0fa1           6 KYIIIGDMGVGKSCLLHQFTEK   27 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999888764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0022  Score=47.85  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=18.8

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      +.|+|..|+|||||++.+..-
T Consensus         5 v~liG~~~vGKTsLl~~~~~~   25 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCAG   25 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988754

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0022  Score=48.14  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -+.|+|..|+|||||++.+.+-
T Consensus         5 KivlvG~~~vGKTsLi~r~~~~   26 (167)
T d1z08a1           5 KVVLLGEGCVGKTSLVLRYCEN   26 (167)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3689999999999999987753

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.91  E-value=0.0021  Score=50.67  Aligned_cols=22  Identities=36%  Similarity=0.727  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.|.||.|+||||++++|+..+
T Consensus        38 lLl~Gp~G~GKttl~~~la~~l   59 (227)
T d1sxjc2          38 LLFYGPPGTGKTSTIVALAREI   59 (227)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCChhHHHHHHHHHh
Confidence            6799999999999999999876

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.91  E-value=0.0035  Score=48.22  Aligned_cols=30  Identities=30%  Similarity=0.360  Sum_probs=23.6

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHH
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~  128 (254)
                      +..-+.+. |.-|.|.|++|+|||||+-.+.
T Consensus         6 H~~~v~~~-g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_           6 HGVLVDIY-GLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             EEEEEEET-TEEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEEEC-CEEEEEEeCCCCCHHHHHHHHH
Confidence            55555554 8889999999999999976544

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.0029  Score=47.84  Aligned_cols=21  Identities=43%  Similarity=0.509  Sum_probs=18.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      +.|+|++|+|||||++.+..-
T Consensus         9 I~vvG~~~vGKSSli~~~~~~   29 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVTN   29 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            789999999999999877653

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.89  E-value=0.0032  Score=48.53  Aligned_cols=30  Identities=30%  Similarity=0.297  Sum_probs=24.2

Q ss_pred             ccceeeeeCCCeEEEEECCCCCcHHHHHHHH
Q 025366           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEV  127 (254)
Q Consensus        97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L  127 (254)
                      ++..-+.+ .|.-+.|.|++|+|||||+-.+
T Consensus         6 ~H~~~v~~-~g~gvli~G~sG~GKS~lal~l   35 (177)
T d1knxa2           6 IHGVLLEV-FGVGVLLTGRSGIGKSECALDL   35 (177)
T ss_dssp             EEEEEEEE-TTEEEEEEESSSSSHHHHHHHH
T ss_pred             EEEEEEEE-CCEEEEEEcCCCCCHHHHHHHH
Confidence            45666666 5888999999999999998654

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.87  E-value=0.0037  Score=53.58  Aligned_cols=30  Identities=33%  Similarity=0.429  Sum_probs=27.5

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .++++..+.+.||.|+||||+++.|++.+.
T Consensus       150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            457788999999999999999999999984

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.002  Score=48.58  Aligned_cols=23  Identities=43%  Similarity=0.403  Sum_probs=19.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|..|+|||||++.+.+..
T Consensus         3 Ki~lvG~~~vGKTsLi~~~~~~~   25 (168)
T d2gjsa1           3 KVLLLGAPGVGKSALARIFGGVE   25 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC-
T ss_pred             EEEEECCCCcCHHHHHHHHhCCc
Confidence            37899999999999999988754

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.82  E-value=0.0017  Score=52.33  Aligned_cols=23  Identities=48%  Similarity=0.668  Sum_probs=20.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++.|.||.|+||||+++.++..+
T Consensus        48 ~l~l~GppGtGKT~l~~~l~~~l   70 (287)
T d1w5sa2          48 IYGSIGRVGIGKTTLAKFTVKRV   70 (287)
T ss_dssp             EEECTTCCSSSHHHHHHHHHHHH
T ss_pred             EEEeECCCCCCHHHHHHHHHHHH
Confidence            56677999999999999999876

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.82  E-value=0.0018  Score=51.67  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=20.3

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.|.||+|+||||+++.++..+
T Consensus        36 lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          36 LLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHhh
Confidence            6799999999999999999876

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.0025  Score=48.33  Aligned_cols=21  Identities=29%  Similarity=0.460  Sum_probs=19.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      ++++|..|+|||||++.+.+-
T Consensus        10 i~vvG~~~vGKTsli~~l~~~   30 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTDD   30 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            789999999999999988874

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.81  E-value=0.0017  Score=56.44  Aligned_cols=24  Identities=25%  Similarity=0.303  Sum_probs=21.4

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      --|+|+|.+|+|||||+|.|.|.-
T Consensus        57 l~Iai~G~~n~GKSSLiNaL~G~~   80 (400)
T d1tq4a_          57 LNVAVTGETGSGKSSFINTLRGIG   80 (400)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            348999999999999999999954

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.80  E-value=0.0023  Score=49.47  Aligned_cols=21  Identities=33%  Similarity=0.404  Sum_probs=19.0

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      ++|+|+.|+|||||++.+.+-
T Consensus         9 ivvvG~~~vGKTsli~~l~~~   29 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSDD   29 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhhC
Confidence            789999999999999988764

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0024  Score=48.39  Aligned_cols=22  Identities=18%  Similarity=0.225  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -+.|+|.+|+|||||++.+.+-
T Consensus         4 KivvvG~~~vGKTsLi~~~~~~   25 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSKD   25 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4679999999999999887764

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.76  E-value=0.0025  Score=48.14  Aligned_cols=21  Identities=29%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      ++|+|..|+|||||++.+.+-
T Consensus         8 I~lvG~~~vGKTsll~~~~~~   28 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIEK   28 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCcCHHHHHHHHHhC
Confidence            889999999999999988753

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.72  E-value=0.0027  Score=55.97  Aligned_cols=25  Identities=28%  Similarity=0.549  Sum_probs=22.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .-+.++||+|||||-|+|.|++++.
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l~   74 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLAN   74 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999999885

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.72  E-value=0.0027  Score=48.05  Aligned_cols=22  Identities=27%  Similarity=0.471  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -|.|+|..|+|||||++.+.+-
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~~   29 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQS   29 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999887753

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0031  Score=47.42  Aligned_cols=21  Identities=29%  Similarity=0.589  Sum_probs=18.9

Q ss_pred             EEEECCCCCcHHHHHHHHHHh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      +.|+|+.|+|||||++.+.+-
T Consensus         5 i~lvG~~~vGKTsli~r~~~~   25 (168)
T d2atva1           5 LAIFGRAGVGKSALVVRFLTK   25 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEECCCCCCHHHHHHHHHhC
Confidence            689999999999999988864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.0032  Score=47.32  Aligned_cols=22  Identities=27%  Similarity=0.386  Sum_probs=19.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -++|+|..|+|||||++.+.+-
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~~   26 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3689999999999999987764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.63  E-value=0.0018  Score=49.38  Aligned_cols=24  Identities=25%  Similarity=0.284  Sum_probs=19.8

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      ---+.|+|++|+|||||++.+.+-
T Consensus        17 ~~KI~lvG~~~vGKTsLi~~l~~~   40 (182)
T d1moza_          17 ELRILILGLDGAGKTTILYRLQIG   40 (182)
T ss_dssp             CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcC
Confidence            345789999999999999987543

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0034  Score=47.22  Aligned_cols=22  Identities=32%  Similarity=0.430  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -+.++|..|+|||||++.+..-
T Consensus         8 Ki~vvG~~~vGKTsLi~~l~~~   29 (170)
T d1r2qa_           8 KLVLLGESAVGKSSLVLRFVKG   29 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4789999999999999888754

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0034  Score=47.86  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      .+.|+|..|+|||||++.+.+-
T Consensus         7 KivviG~~~vGKTsli~~~~~~   28 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTTN   28 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999887763

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0027  Score=48.09  Aligned_cols=23  Identities=43%  Similarity=0.384  Sum_probs=20.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -+.|+|..|+|||||++.+.+..
T Consensus         5 Kv~lvG~~~vGKTsLi~~~~~~~   27 (172)
T d2g3ya1           5 RVVLIGEQGVGKSTLANIFAGVH   27 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCCC
T ss_pred             EEEEECCCCcCHHHHHHHHHhCc
Confidence            47899999999999999988754

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.56  E-value=0.0036  Score=49.74  Aligned_cols=25  Identities=20%  Similarity=0.312  Sum_probs=22.9

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ..+|+|-|+-||||||+++.|.-.+
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l   26 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTY   26 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHH
Confidence            4689999999999999999999877

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.0038  Score=47.04  Aligned_cols=22  Identities=27%  Similarity=0.483  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -+.|+|..|+|||||++.+.+-
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~~   27 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQK   27 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            4678999999999999988763

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.48  E-value=0.0041  Score=46.74  Aligned_cols=21  Identities=33%  Similarity=0.431  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025366          109 IVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~G  129 (254)
                      -++|+|+.|+|||||++.+.+
T Consensus         8 Ki~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           8 KVMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            389999999999999997765

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=95.48  E-value=0.006  Score=46.57  Aligned_cols=31  Identities=29%  Similarity=0.324  Sum_probs=23.6

Q ss_pred             ccceeeeeCCCeEEEEECCCCCcHHHHHHHHH
Q 025366           97 TSALASNVNVKHIVGLAGPPGAGKSTLAAEVV  128 (254)
Q Consensus        97 l~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~  128 (254)
                      ++..-+.+. |.-|.|.|++|+|||||+-.+.
T Consensus         6 ~H~~~v~~~-g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2           6 LHGVLVDVY-GVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EESEEEEET-TEEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEEEEC-CEEEEEEeCCCCCHHHHHHHHH
Confidence            355555554 8899999999999999975443

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=95.45  E-value=0.004  Score=51.63  Aligned_cols=33  Identities=30%  Similarity=0.420  Sum_probs=29.2

Q ss_pred             ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |.=+.+-+|+..+|+|++|+|||||+..|+...
T Consensus        35 D~l~PigrGQr~~I~g~~g~GKT~l~~~i~~~~   67 (289)
T d1xpua3          35 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI   67 (289)
T ss_dssp             HHHSCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             eecccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence            445778899999999999999999999998765

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.42  E-value=0.0045  Score=46.37  Aligned_cols=22  Identities=32%  Similarity=0.487  Sum_probs=19.1

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -+.|+|..|+|||||++.+..-
T Consensus         5 KivvvG~~~vGKTsli~r~~~~   26 (167)
T d1c1ya_           5 KLVVLGSGGVGKSALTVQFVQG   26 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4789999999999999987654

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.37  E-value=0.0025  Score=48.23  Aligned_cols=20  Identities=25%  Similarity=0.378  Sum_probs=8.5

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 025366          110 VGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~G  129 (254)
                      |.|+|..|+|||||++.+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0048  Score=46.98  Aligned_cols=23  Identities=26%  Similarity=0.408  Sum_probs=19.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++++|..|+|||||++.+.+-.
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~~~   29 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLTGS   29 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHHhCC
Confidence            47899999999999999877643

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.35  E-value=0.0048  Score=46.39  Aligned_cols=21  Identities=33%  Similarity=0.468  Sum_probs=18.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025366          109 IVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~G  129 (254)
                      -+.|+|..|+|||||++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            578999999999999998765

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.29  E-value=0.0027  Score=47.90  Aligned_cols=21  Identities=24%  Similarity=0.267  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025366          109 IVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~G  129 (254)
                      -+.|+|++|+|||||++.+.+
T Consensus        14 kIvlvG~~~vGKTSli~rl~~   34 (173)
T d1e0sa_          14 RILMLGLDAAGKTTILYKLKL   34 (173)
T ss_dssp             EEEEEEETTSSHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            477999999999999998764

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.28  E-value=0.0047  Score=47.23  Aligned_cols=21  Identities=19%  Similarity=0.221  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025366          109 IVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~G  129 (254)
                      -+.|+|..|+|||||++.+..
T Consensus        11 Ki~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          11 KCVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            378999999999999988765

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.27  E-value=0.0047  Score=48.85  Aligned_cols=31  Identities=23%  Similarity=0.194  Sum_probs=23.3

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      .-+.|+|.+|+|||||++.+..-.  ..|+-|-
T Consensus         7 ~KilllG~~~vGKTsll~~~~~~~--~~pTiG~   37 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQMRILH--VVLTSGI   37 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHH--CCCCCSC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCC--cCCCCCe
Confidence            357899999999999998875332  2377664

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.23  E-value=0.0044  Score=47.89  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +||+|.-.+|||||++.|.|..
T Consensus         8 IaiiGhvd~GKSTL~~~L~g~~   29 (195)
T d1kk1a3           8 IGMVGHVDHGKTTLTKALTGVW   29 (195)
T ss_dssp             EEEECSTTSSHHHHHHHHHTCC
T ss_pred             EEEEeccCCcHHHHHHHHHhhh
Confidence            7999999999999999999865

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.22  E-value=0.0024  Score=48.30  Aligned_cols=21  Identities=29%  Similarity=0.438  Sum_probs=17.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025366          109 IVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~G  129 (254)
                      -++|+|+.|+|||||++.+.+
T Consensus         5 Ki~vvG~~~vGKTsli~~~~~   25 (170)
T d1i2ma_           5 KLVLVGDGGTGKTTFVKRHLT   25 (170)
T ss_dssp             EEEEEECTTSSHHHHHHTTC-
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            478999999999999987654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.21  E-value=0.0028  Score=53.32  Aligned_cols=26  Identities=27%  Similarity=0.213  Sum_probs=23.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      |.-+.|.|+.|+|||||+|.++++++
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCeEEEECCCCccHHHHHHHHHHhCC
Confidence            34578999999999999999999984

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.21  E-value=0.0046  Score=51.25  Aligned_cols=23  Identities=30%  Similarity=0.609  Sum_probs=21.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -+||+|...+|||||++.|++--
T Consensus        12 kiGivG~Pn~GKSTlfnalT~~~   34 (296)
T d1ni3a1          12 KTGIVGMPNVGKSTFFRAITKSV   34 (296)
T ss_dssp             EEEEEECSSSSHHHHHHHHHHST
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            49999999999999999999863

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.14  E-value=0.0081  Score=45.65  Aligned_cols=32  Identities=22%  Similarity=0.136  Sum_probs=24.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      -+.|+|..|+|||||++.+..-.-...|+.|-
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~~~~~~pTiG~   35 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRIIHGSGVPTTGI   35 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHTSSCCCCCSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCceeeE
Confidence            36899999999999999887665434566653

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.09  E-value=0.0075  Score=52.26  Aligned_cols=28  Identities=32%  Similarity=0.496  Sum_probs=24.5

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.-++.|.||.||||||++..+...+.
T Consensus       156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~  183 (401)
T d1p9ra_         156 RPHGIILVTGPTGSGKSTTLYAGLQELN  183 (401)
T ss_dssp             SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred             hhhceEEEEcCCCCCccHHHHHHhhhhc
Confidence            3466899999999999999999998874

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.09  E-value=0.0057  Score=46.54  Aligned_cols=21  Identities=19%  Similarity=0.324  Sum_probs=18.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025366          109 IVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~G  129 (254)
                      -+.|+|..|+|||||++.+..
T Consensus         4 KivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           4 KIVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            368999999999999986665

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.07  E-value=0.0084  Score=45.35  Aligned_cols=29  Identities=21%  Similarity=0.166  Sum_probs=23.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhcccCCCCce
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRINKIWPQKAS  140 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~~~~p~~G~  140 (254)
                      -+.|+|..|+|||||++.+....-   |+.|.
T Consensus         4 KivllG~~~vGKTsl~~r~~~~~~---~t~~~   32 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKIIHE---AGTGI   32 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHS---CCCSE
T ss_pred             EEEEECCCCCCHHHHHHHHhhCCC---CCccE
Confidence            478999999999999998865543   77664

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.04  E-value=0.0059  Score=46.80  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=18.7

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -|.|+|..|+|||||++.+.+-
T Consensus         5 KvvllG~~~vGKTSli~r~~~~   26 (191)
T d2ngra_           5 KCVVVGDGAVGKTCLLISYTTN   26 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCcCHHHHHHHHHhC
Confidence            3789999999999999877654

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=95.01  E-value=0.0071  Score=49.42  Aligned_cols=30  Identities=30%  Similarity=0.544  Sum_probs=25.7

Q ss_pred             eeCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          103 NVNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       103 ~i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -++.|.++-|.||+|+|||||+-.++....
T Consensus        50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q   79 (263)
T d1u94a1          50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ   79 (263)
T ss_dssp             SEETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CccCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence            467899999999999999999877776653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.99  E-value=0.0045  Score=51.65  Aligned_cols=22  Identities=32%  Similarity=0.502  Sum_probs=19.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |||+|..-+|||||++.|+|.-
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            7999999999999999998864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.89  E-value=0.0089  Score=48.94  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=22.1

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      ...+++|.|.-|.|||||++.+...
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHh
Confidence            3679999999999999999998764

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0047  Score=50.94  Aligned_cols=25  Identities=24%  Similarity=0.309  Sum_probs=22.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      --+|+|+||-++||||||+.|.|..
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCC
Confidence            4689999999999999999999865

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.83  E-value=0.0082  Score=46.97  Aligned_cols=22  Identities=36%  Similarity=0.409  Sum_probs=19.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -++|+|.-++|||||+..|...
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~   26 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYV   26 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHH
Confidence            3899999999999999999654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=94.79  E-value=0.0081  Score=49.19  Aligned_cols=23  Identities=35%  Similarity=0.509  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -+||+|-.-+|||||++.|++.-
T Consensus         4 ~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           4 KCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHTC
T ss_pred             eEEEECCCCCCHHHHHHHHHCCC
Confidence            58999999999999999999875

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.0075  Score=47.84  Aligned_cols=23  Identities=35%  Similarity=0.494  Sum_probs=19.6

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -++.|.|.=|||||||++.+...
T Consensus         4 Pv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           4 AVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CEEEEeeCCCCCHHHHHHHHHhc
Confidence            37889999999999999888653

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.51  E-value=0.011  Score=46.14  Aligned_cols=26  Identities=23%  Similarity=0.388  Sum_probs=22.7

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ...+.+.||.|+||||+++.++..+.
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~   49 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLL   49 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhcc
Confidence            34588999999999999999999874

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=94.32  E-value=0.013  Score=47.99  Aligned_cols=22  Identities=36%  Similarity=0.664  Sum_probs=19.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -++|+|+.|+|||||+..|...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~   25 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYK   25 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHHH
Confidence            5899999999999999988543

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=94.30  E-value=0.013  Score=46.67  Aligned_cols=25  Identities=28%  Similarity=0.535  Sum_probs=21.7

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..+.|.||+|+||||++++++..+.
T Consensus        35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~   59 (239)
T d1njfa_          35 HAYLFSGTRGVGKTSIARLLAKGLN   59 (239)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             eeEEEECCCCCcHHHHHHHHHHHhc
Confidence            3567889999999999999998874

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.05  E-value=0.012  Score=45.80  Aligned_cols=23  Identities=26%  Similarity=0.398  Sum_probs=21.0

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++|+|.-.+|||||++.|.|..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            58999999999999999998865

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=94.00  E-value=0.017  Score=44.90  Aligned_cols=22  Identities=36%  Similarity=0.575  Sum_probs=20.4

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +|++|.-.+|||||++.|.+..
T Consensus         6 i~iiGHvd~GKSTL~~~l~~~~   27 (196)
T d1d2ea3           6 VGTIGHVDHGKTTLTAAITKIL   27 (196)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHH
T ss_pred             EEEEeCCCCcHHHHHHHHHHHH
Confidence            7999999999999999998865

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.99  E-value=0.011  Score=48.74  Aligned_cols=23  Identities=26%  Similarity=0.429  Sum_probs=20.6

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -++++|.-+||||||++.|.|.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            36899999999999999999964

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=93.98  E-value=0.013  Score=48.26  Aligned_cols=21  Identities=29%  Similarity=0.484  Sum_probs=18.9

Q ss_pred             eEEEEECCCCCcHHHHHHHHH
Q 025366          108 HIVGLAGPPGAGKSTLAAEVV  128 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~  128 (254)
                      .-++|+|+.|||||||+..|.
T Consensus         7 Rni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           7 RNIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHH
Confidence            468999999999999998884

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.87  E-value=0.011  Score=48.51  Aligned_cols=22  Identities=32%  Similarity=0.478  Sum_probs=20.1

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++++|.-+||||||++.|+|.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            6699999999999999999964

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=93.69  E-value=0.02  Score=47.96  Aligned_cols=23  Identities=22%  Similarity=0.371  Sum_probs=20.8

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++.+.||+|+|||.|.+.|++.+
T Consensus       125 ~~l~~G~pG~GKT~la~ala~~~  147 (321)
T d1w44a_         125 MVIVTGKGNSGKTPLVHALGEAL  147 (321)
T ss_dssp             EEEEECSSSSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHHHh
Confidence            56668999999999999999987

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.62  E-value=0.02  Score=48.85  Aligned_cols=28  Identities=25%  Similarity=0.611  Sum_probs=22.6

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++++- +.++||+|+|||-|.|.|+.++.
T Consensus        66 ~p~~n-iLfiGPTGvGKTElAk~LA~~~~   93 (364)
T d1um8a_          66 LSKSN-ILLIGPTGSGKTLMAQTLAKHLD   93 (364)
T ss_dssp             CCCCC-EEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCcc-eeeeCCCCccHHHHHHHHHhhcc
Confidence            34444 56789999999999999998863

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.60  E-value=0.02  Score=46.94  Aligned_cols=33  Identities=27%  Similarity=0.449  Sum_probs=28.0

Q ss_pred             ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |.=+.+-+|+.++|.|+.|+|||||+..|+...
T Consensus        60 D~l~pigkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          60 DLLAPYAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             HHHSCEETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             eeeccccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            445778899999999999999999987777653

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.43  E-value=0.045  Score=44.47  Aligned_cols=29  Identities=21%  Similarity=0.436  Sum_probs=23.4

Q ss_pred             eeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          102 SNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       102 l~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      +.+.+ .+.+|+|||||||||++.+|.-++
T Consensus        20 i~f~~-~lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          20 IGFSD-RVTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             EECCS-SEEEEECCTTTCSTHHHHHHHHTS
T ss_pred             EeCCC-CeEEEECCCCCcHHHHHHHHHHHh
Confidence            44443 388999999999999999997654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.31  E-value=0.028  Score=46.84  Aligned_cols=25  Identities=28%  Similarity=0.444  Sum_probs=22.2

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .-.+.++||+|+|||.|++.|+-.+
T Consensus        53 ~~~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          53 IGSFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             SEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCcchHHHHHHHHHHHh
Confidence            3367899999999999999999987

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.12  E-value=0.033  Score=39.83  Aligned_cols=28  Identities=7%  Similarity=0.084  Sum_probs=24.6

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ++|..+.+.|-+||||||+.+.|.--+.
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~   31 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFL   31 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            5799999999999999999999966663

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.92  E-value=0.033  Score=43.23  Aligned_cols=26  Identities=35%  Similarity=0.557  Sum_probs=22.5

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..-+.|+|++|.|||++..-|+..+.
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~ri~   68 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQRII   68 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHHHH
Confidence            44678999999999999999998773

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=92.89  E-value=0.032  Score=45.54  Aligned_cols=26  Identities=35%  Similarity=0.460  Sum_probs=22.4

Q ss_pred             CeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..-+.|+||+|+|||+++.-++..+.
T Consensus        39 k~n~lLVG~~GvGKTalv~~la~ri~   64 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLAWRIV   64 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHHHHHH
Confidence            45678999999999999999998763

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=92.60  E-value=0.033  Score=43.66  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=20.7

Q ss_pred             EEEECCCCCcHHHHHHHHHHhhc
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +.|.||+|+|||-|++.++....
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~~~   61 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNEAK   61 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHHhc
Confidence            67999999999999999998763

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.49  E-value=0.029  Score=48.09  Aligned_cols=24  Identities=29%  Similarity=0.457  Sum_probs=19.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHH-Hhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVV-RRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~-Gll  131 (254)
                      ..+.|+|++|||||++++.|. .++
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~~~   75 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYTGL   75 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHHHH
Confidence            458999999999999987544 444

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=92.39  E-value=0.033  Score=43.87  Aligned_cols=21  Identities=29%  Similarity=0.317  Sum_probs=18.4

Q ss_pred             EEEEECCCCCcHHHHHHHHHH
Q 025366          109 IVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~G  129 (254)
                      -+|++|.-++|||||+..|..
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            389999999999999988853

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.23  E-value=0.03  Score=47.07  Aligned_cols=23  Identities=35%  Similarity=0.385  Sum_probs=19.2

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .|.|-|+=||||||+++.|...+
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l   28 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALG   28 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC--
T ss_pred             EEEEECCcCCCHHHHHHHHHHHh
Confidence            47899999999999999998665

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=92.14  E-value=0.042  Score=46.17  Aligned_cols=24  Identities=29%  Similarity=0.281  Sum_probs=21.5

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhhc
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .|.|-|+-|+||||+++.|+..+.
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~   31 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAAS   31 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGG
T ss_pred             EEEEECCccCCHHHHHHHHHHHhc
Confidence            578889999999999999998874

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=91.67  E-value=0.057  Score=42.58  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.6

Q ss_pred             EEEECCCCCcHHHHHHHHHHhh
Q 025366          110 VGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ++++|.-.+|||||+..|....
T Consensus        12 i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          12 FLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHT
T ss_pred             EEEEcCCCCCHHHHHHHHHHHc
Confidence            6899999999999999997654

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=91.37  E-value=0.049  Score=45.72  Aligned_cols=23  Identities=35%  Similarity=0.475  Sum_probs=21.3

Q ss_pred             EEEEECCCCCcHHHHHHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .|.|-|+=||||||+++.|...+
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l   29 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHF   29 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58899999999999999999887

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=91.28  E-value=0.052  Score=45.09  Aligned_cols=20  Identities=30%  Similarity=0.483  Sum_probs=17.6

Q ss_pred             CCCeEEEEECCCCCcHHHHH
Q 025366          105 NVKHIVGLAGPPGAGKSTLA  124 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLl  124 (254)
                      +.|++..+.|.||+|||||-
T Consensus        12 ~~~~~alfFGLSGTGKTTLs   31 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLS   31 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHH
T ss_pred             CCCCEEEEEccCCCCcccce
Confidence            45899999999999999974

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.88  E-value=0.043  Score=44.33  Aligned_cols=23  Identities=17%  Similarity=0.299  Sum_probs=16.9

Q ss_pred             EEEEECCCCCcHHHH-HHHHHHhh
Q 025366          109 IVGLAGPPGAGKSTL-AAEVVRRI  131 (254)
Q Consensus       109 ivgLiGpNGsGKSTL-lk~L~Gll  131 (254)
                      -+.|.|+.||||||+ +..+.-++
T Consensus        16 ~~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CEEEEeeCCccHHHHHHHHHHHHH
Confidence            367889999999975 45555554

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=90.85  E-value=0.038  Score=45.25  Aligned_cols=33  Identities=15%  Similarity=0.139  Sum_probs=27.5

Q ss_pred             ceeeeeCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366           99 ALASNVNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus        99 ~vsl~i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      |.=+.+-+|+.++|+|++|+|||+|+..+....
T Consensus        59 D~l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~   91 (276)
T d1fx0a3          59 DAMIPVGRGQRELIIGDRQTGKTAVATDTILNQ   91 (276)
T ss_dssp             TTTSCCBTTCBCBEEESSSSSHHHHHHHHHHTC
T ss_pred             eccccccCCceEeeccCCCCChHHHHHHHHhhh
Confidence            445788899999999999999999998765444

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=90.62  E-value=0.059  Score=44.87  Aligned_cols=19  Identities=32%  Similarity=0.489  Sum_probs=17.0

Q ss_pred             CCeEEEEECCCCCcHHHHH
Q 025366          106 VKHIVGLAGPPGAGKSTLA  124 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLl  124 (254)
                      .|++..+.|.||+|||||.
T Consensus        13 ~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          13 EGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TCCEEEEEECTTSCHHHHT
T ss_pred             CCCEEEEEccCCCCccccc
Confidence            4889999999999999974

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=90.56  E-value=0.05  Score=44.41  Aligned_cols=22  Identities=14%  Similarity=0.295  Sum_probs=16.1

Q ss_pred             EEEECCCCCcHHHHH-HHHHHhh
Q 025366          110 VGLAGPPGAGKSTLA-AEVVRRI  131 (254)
Q Consensus       110 vgLiGpNGsGKSTLl-k~L~Gll  131 (254)
                      +.|.|+.||||||.+ ..++-++
T Consensus        27 ~lV~g~aGSGKTt~l~~ri~~ll   49 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLTHRIAYLM   49 (318)
T ss_dssp             EEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEecCCccHHHHHHHHHHHHH
Confidence            668899999999754 4455444

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=90.51  E-value=0.097  Score=40.35  Aligned_cols=27  Identities=7%  Similarity=-0.006  Sum_probs=23.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.-+.+.||+|+||||+++.++..+.
T Consensus        14 ~~~~~l~~G~~g~gk~~~a~~l~~~i~   40 (198)
T d2gnoa2          14 EGISILINGEDLSYPREVSLELPEYVE   40 (198)
T ss_dssp             SSEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHh
Confidence            466888999999999999999998774

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=90.47  E-value=0.099  Score=42.35  Aligned_cols=28  Identities=21%  Similarity=0.484  Sum_probs=25.0

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ..+--++.|.||.++|||||+++|..++
T Consensus       101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l  128 (267)
T d1u0ja_         101 FGKRNTIWLFGPATTGKTNIAEAIAHTV  128 (267)
T ss_dssp             STTCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence            3556688999999999999999999998

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.45  E-value=0.092  Score=44.41  Aligned_cols=21  Identities=38%  Similarity=0.710  Sum_probs=18.0

Q ss_pred             CeEEEEECCCCCcHHHHHHHH
Q 025366          107 KHIVGLAGPPGAGKSTLAAEV  127 (254)
Q Consensus       107 GeivgLiGpNGsGKSTLlk~L  127 (254)
                      +.++.|.||.|+||||++..+
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~  183 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKL  183 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHH
Confidence            679999999999999987543

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.35  E-value=0.072  Score=42.45  Aligned_cols=22  Identities=27%  Similarity=0.360  Sum_probs=18.9

Q ss_pred             EEEEECCCCCcHHHHHHHHHHh
Q 025366          109 IVGLAGPPGAGKSTLAAEVVRR  130 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~Gl  130 (254)
                      -++++|..++|||||+..|.-.
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~   29 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYK   29 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4789999999999999888643

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=90.30  E-value=0.058  Score=44.28  Aligned_cols=32  Identities=13%  Similarity=0.144  Sum_probs=26.4

Q ss_pred             cceeeeeCCCeEEEEECCCCCcHHHHHHHHHH
Q 025366           98 SALASNVNVKHIVGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus        98 ~~vsl~i~~GeivgLiGpNGsGKSTLlk~L~G  129 (254)
                      -|.-+.+-+|+.++|.|+.|+|||||+..+..
T Consensus        59 ID~l~pig~GQr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          59 VDSLVPIGRGQRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             HHHHSCCBTTCBCEEEESTTSSHHHHHHHHHH
T ss_pred             EecccCccCCCEEEeecCCCCChHHHHHHHHH
Confidence            34557888999999999999999999865543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=90.12  E-value=0.076  Score=44.21  Aligned_cols=19  Identities=32%  Similarity=0.494  Sum_probs=17.3

Q ss_pred             CCeEEEEECCCCCcHHHHH
Q 025366          106 VKHIVGLAGPPGAGKSTLA  124 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLl  124 (254)
                      .|++..+.|.||+|||||.
T Consensus        13 ~gd~alfFGLSGTGKTTLs   31 (323)
T d1ii2a1          13 QGDVTVFFGLSGTGKTTLS   31 (323)
T ss_dssp             TCCEEEEECCTTSSHHHHH
T ss_pred             CCCEEEEEccCCCCcccce
Confidence            5888899999999999996

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=90.04  E-value=0.11  Score=47.86  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=24.5

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      -.+.+.|.|.|.+|||||+-.|.|...+
T Consensus        83 ~~~~QsIiisGeSGsGKTe~~k~il~yL  110 (684)
T d1lkxa_          83 SQENQCVIISGESGAGKTEASKKIMQFL  110 (684)
T ss_dssp             HCCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCeEEEEEcCCCCCHHHHHHHHHHHH
Confidence            3467899999999999999999987766

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=90.00  E-value=0.11  Score=48.07  Aligned_cols=28  Identities=21%  Similarity=0.401  Sum_probs=24.7

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.+.|.|.|.||||||+-.|.|...+.
T Consensus       123 ~~nQsIiisGeSGaGKTe~~k~il~yL~  150 (712)
T d1d0xa2         123 RQNQSLLITGESGAGKTENTKKVIQYLA  150 (712)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999988763

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=89.89  E-value=0.037  Score=38.99  Aligned_cols=21  Identities=29%  Similarity=0.243  Sum_probs=18.0

Q ss_pred             eCCCeEEEEECCCCCcHHHHH
Q 025366          104 VNVKHIVGLAGPPGAGKSTLA  124 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLl  124 (254)
                      +++|+.+.|.+|.|||||+.+
T Consensus         4 l~~~~~~il~~~tGsGKT~~~   24 (140)
T d1yksa1           4 LKKGMTTVLDFHPGAGKTRRF   24 (140)
T ss_dssp             TSTTCEEEECCCTTSSTTTTH
T ss_pred             HHcCCcEEEEcCCCCChhHHH
Confidence            467999999999999999654

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=89.88  E-value=0.095  Score=40.73  Aligned_cols=29  Identities=24%  Similarity=0.399  Sum_probs=26.3

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      +++-..+.|.||.++|||+++..|+.++.
T Consensus        50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             CTTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            56778999999999999999999999983

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=89.45  E-value=0.12  Score=47.58  Aligned_cols=27  Identities=22%  Similarity=0.374  Sum_probs=24.1

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+.+.|.|.|.+|||||+-.|.|...+
T Consensus        89 ~~~Q~IiisGeSGaGKTe~~k~il~yL  115 (710)
T d1br2a2          89 REDQSILCTGESGAGKTENTKKVIQYL  115 (710)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999988776

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.34  E-value=0.068  Score=42.71  Aligned_cols=20  Identities=35%  Similarity=0.489  Sum_probs=18.2

Q ss_pred             EEEECCCCCcHHHHHHHHHH
Q 025366          110 VGLAGPPGAGKSTLAAEVVR  129 (254)
Q Consensus       110 vgLiGpNGsGKSTLlk~L~G  129 (254)
                      |+|+|.-++|||||+..|..
T Consensus        27 i~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          27 IVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHH
Confidence            89999999999999998843

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.26  E-value=0.075  Score=44.72  Aligned_cols=20  Identities=30%  Similarity=0.356  Sum_probs=18.5

Q ss_pred             EEEEECCCCCcHHHHHHHHH
Q 025366          109 IVGLAGPPGAGKSTLAAEVV  128 (254)
Q Consensus       109 ivgLiGpNGsGKSTLlk~L~  128 (254)
                      -|+|+|+-|+|||||+..|.
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHH
Confidence            39999999999999999885

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=88.44  E-value=0.15  Score=47.69  Aligned_cols=27  Identities=22%  Similarity=0.400  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ...+.|.|.|.||||||+-.|.|...+
T Consensus       121 ~~~QsIiisGeSGaGKTe~~K~il~yL  147 (794)
T d2mysa2         121 RENQSILITGESGAGKTVNTKRVIQYF  147 (794)
T ss_dssp             TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            457899999999999999999888877

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=88.27  E-value=0.13  Score=41.03  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=21.9

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      ...-|.|.|+.|+||+++++.|...-
T Consensus        22 ~~~pvlI~Ge~GtGK~~~A~~ih~~s   47 (247)
T d1ny5a2          22 AECPVLITGESGVGKEVVARLIHKLS   47 (247)
T ss_dssp             CCSCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhc
Confidence            34567899999999999999997654

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=87.86  E-value=0.16  Score=47.42  Aligned_cols=28  Identities=21%  Similarity=0.337  Sum_probs=24.2

Q ss_pred             CCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          105 NVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       105 ~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      .+.+.|.|.|.||||||.-.|.|...+.
T Consensus       119 ~~nQ~IiisGESGaGKTe~~K~il~yL~  146 (789)
T d1kk8a2         119 RENQSCLITGESGAGKTENTKKVIMYLA  146 (789)
T ss_dssp             TSEEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            3578999999999999999888888763

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=87.81  E-value=0.12  Score=44.21  Aligned_cols=24  Identities=33%  Similarity=0.598  Sum_probs=20.0

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhh
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .-+.|+|++|.|||+++.-|+..+
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~i   67 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQRI   67 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCCeEECCCCCCHHHHHHHHHHHH
Confidence            346799999999999998877665

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=87.72  E-value=0.11  Score=41.76  Aligned_cols=28  Identities=36%  Similarity=0.418  Sum_probs=21.9

Q ss_pred             eCCCeEEEEECCCCCcHHH--HHHHHHHhh
Q 025366          104 VNVKHIVGLAGPPGAGKST--LAAEVVRRI  131 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKST--Llk~L~Gll  131 (254)
                      +.+|+.+.|.+|.|||||+  |..++....
T Consensus         6 ~~~~~~~lv~~~TGsGKT~~~l~~~~~~~~   35 (305)
T d2bmfa2           6 FRKKRLTIMDLHPGAGKTKRYLPAIVREAI   35 (305)
T ss_dssp             SSTTCEEEECCCTTSSTTTTHHHHHHHHHH
T ss_pred             hhcCCcEEEEECCCCCHHHHHHHHHHHHHH
Confidence            5689999999999999997  335555544

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=87.67  E-value=0.16  Score=40.92  Aligned_cols=26  Identities=27%  Similarity=0.323  Sum_probs=22.8

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhh
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRI  131 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll  131 (254)
                      .+-.++++|-.-+|||||++.|.|.-
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CceEEEEEecCccchhhhhhhhhccc
Confidence            34569999999999999999999865

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=87.41  E-value=0.2  Score=46.24  Aligned_cols=29  Identities=24%  Similarity=0.312  Sum_probs=25.1

Q ss_pred             eCCCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          104 VNVKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       104 i~~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      -...+.|.|.|.||||||+-.|.|...+.
T Consensus        91 ~~~~Q~IiisGeSGsGKTe~~k~il~~l~  119 (730)
T d1w7ja2          91 DERNQSIIVSGESGAGKTVSAKYAMRYFA  119 (730)
T ss_dssp             HTCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hCCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            34678999999999999999999988763

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=86.96  E-value=0.16  Score=35.95  Aligned_cols=21  Identities=33%  Similarity=0.487  Sum_probs=16.7

Q ss_pred             CCeEEEEECCCCCcHHHHHHH
Q 025366          106 VKHIVGLAGPPGAGKSTLAAE  126 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~  126 (254)
                      ..+...|.+|-|||||+++-.
T Consensus         7 ~~~~~ll~apTGsGKT~~~~~   27 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVPA   27 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHH
Confidence            356777899999999998643

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=86.59  E-value=0.29  Score=35.38  Aligned_cols=25  Identities=32%  Similarity=0.293  Sum_probs=21.0

Q ss_pred             CeEEEEECCCCCcHHH-HHHHHHHhh
Q 025366          107 KHIVGLAGPPGAGKST-LAAEVVRRI  131 (254)
Q Consensus       107 GeivgLiGpNGsGKST-Llk~L~Gll  131 (254)
                      |.+..|+||=.||||| |++.+....
T Consensus         2 G~L~~i~GpMfsGKTteLi~~~~~~~   27 (139)
T d2b8ta1           2 GWIEFITGPMFAGKTAELIRRLHRLE   27 (139)
T ss_dssp             CEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred             cEEEEEEccccCHHHHHHHHHHHHHH
Confidence            6788899999999999 777776654

>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-murNac-tripeptide D-alanyl-D-alanine-adding enzyme MurF
species: Escherichia coli [TaxId: 562]

Probab=85.65  E-value=0.31  Score=36.77  Aligned_cols=25  Identities=20%  Similarity=0.407  Sum_probs=22.5

Q ss_pred             CCeEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          106 VKHIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      |+++|+|.|-|  ||||...+|.-++.
T Consensus         1 p~kvI~VTGTn--GKTTt~~mi~~iL~   25 (214)
T d1gg4a4           1 PARVVALTGSS--GKTSVKEMTAAILS   25 (214)
T ss_dssp             CCEEEEEECSS--CHHHHHHHHHHHHT
T ss_pred             CCCEEEEeCCC--cHHHHHHHHHHHHH
Confidence            46899999998  59999999999994

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=85.11  E-value=0.35  Score=37.03  Aligned_cols=26  Identities=27%  Similarity=0.544  Sum_probs=22.6

Q ss_pred             CeEEEEE-CCCCCcHHHHHHHHHHhhc
Q 025366          107 KHIVGLA-GPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       107 GeivgLi-GpNGsGKSTLlk~L~Gll~  132 (254)
                      |++|++. +.-|+||||+.--|+..+.
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la   28 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALG   28 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHH
Confidence            6788888 7789999999999988884

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=82.75  E-value=0.43  Score=35.89  Aligned_cols=25  Identities=12%  Similarity=0.212  Sum_probs=21.5

Q ss_pred             eEEEEECCC-CCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPP-GAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpN-GsGKSTLlk~L~Gll~  132 (254)
                      +.+-|.|-+ |+||||+.=.|+..+.
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa   27 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAK   27 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHH
Confidence            467889997 9999999988888884

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=81.83  E-value=0.48  Score=37.36  Aligned_cols=25  Identities=28%  Similarity=0.434  Sum_probs=21.8

Q ss_pred             eEEEEECCCCCcHHHHHHHHHHhhc
Q 025366          108 HIVGLAGPPGAGKSTLAAEVVRRIN  132 (254)
Q Consensus       108 eivgLiGpNGsGKSTLlk~L~Gll~  132 (254)
                      ..|+|.|.=|+||||+.=.|+..+.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA~~LA   26 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLTSGLH   26 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHH
Confidence            4688999999999999988888883

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.07  E-value=0.52  Score=33.66  Aligned_cols=25  Identities=36%  Similarity=0.266  Sum_probs=19.8

Q ss_pred             CCeEEEEECCCCCcHHHHH-HHHHHh
Q 025366          106 VKHIVGLAGPPGAGKSTLA-AEVVRR  130 (254)
Q Consensus       106 ~GeivgLiGpNGsGKSTLl-k~L~Gl  130 (254)
                      +|.+..|+||=.|||||-| +.+...
T Consensus         1 ~G~L~li~GpMfsGKTt~Li~~~~~~   26 (133)
T d1xbta1           1 RGQIQVILGPMFSGKSTELMRRVRRF   26 (133)
T ss_dssp             CCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CcEEEEEEecccCHHHHHHHHHHHHH
Confidence            5889999999999999955 444443