Citrus Sinensis ID: 025383

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MGSSCPPSDDLSVMVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYLSPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDGNWGSREFMR
Secondary Structure (PSIPRED)
ccccccccccccEEEEcccccccccccccccccHHHHHHHHHHHHHHcccccccccHHHHHHcccEEEEcccccccEEEEEEEEccccccccHHHHHHHHHHHHccccccccEEEEEEEcccccccccccHHHHHHHHHHcHHHHHHHccEEEEEcccHHHHHHHHHHHHcccccccccEEEEEccHHHHHHccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEEEEEcccccccHHHHHcccccccHHHHHHHHHHHccHHHcccccHHHHHHccEEEEEcccccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccccccccHHHHHHHHHHHcHHHHHHHHEEEEEcHHHHHHHHHHHHHHHHHcHHHHHHEEEHHHHHHHHHHccHHHccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHcc
Coil and Loop (DISEMBL)
mgsscppsddlSVMVLASdlgidarpflskqqDTEIEEQEQEQWHDcaqylspdedfsdldsLQFFClqgsdksgnRIFRLVgkyfpapvvggerLKKYIFHKIcselpdgpfcIVYMHTcvqkednypgfTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIkkgeieipefvqnhdnvlehrpltdygiepdhlhlpevpnmaysfgrhdgnwgsrefmr
Flexible Loop (DISEMBL)
mgsscppsddLSVMVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYLSPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDGNWGSREFMR
Low Complexity Region (SEG)
MGSSCPPSDDLSVMVLASDLGIDARPFLSKqqdteieeqeqeqWHDCAQYLSPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDGNWGSREFMR
Disordered region (IsUnstruct)
**************VLA**LG**********************WHDCAQYLSPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFG*************
Disordered Region (DISOPRED)
*************MV************************************SPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDY*********************************
Disordered Region (DISEMBL)
*********DLSVMVLASDLGIDARPFLSKQ*************HDCAQYLSPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDGNWGSREFMR
Disordered Region (DISPRO)
*********DLSVMVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYLSPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDGNWGSREFMR
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSCPPSDDLSVMVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYLSPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDGNWGSREFMR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q7JUR6	540	Protein GDAP2 homolog OS=	yes	no	0.588	0.275	0.272	3e-14
Q292F9	542	Protein GDAP2 homolog OS=	yes	no	0.588	0.274	0.272	3e-14
Q5CZL1	496	Ganglioside-induced diffe	yes	no	0.588	0.300	0.291	1e-12
Q66HX8	504	Ganglioside-induced diffe	yes	no	0.719	0.361	0.265	1e-12
Q66H63	497	Ganglioside-induced diffe	yes	no	0.715	0.364	0.278	8e-12
Q5XGM5	496	Ganglioside-induced diffe	N/A	no	0.616	0.314	0.295	1e-11
Q4R678	461	Ganglioside-induced diffe	N/A	no	0.664	0.364	0.280	2e-11
Q9NXN4	497	Ganglioside-induced diffe	yes	no	0.664	0.338	0.280	2e-11
Q9DBL2	498	Ganglioside-induced diffe	yes	no	0.715	0.363	0.272	2e-11
Q2KIX2	497	Ganglioside-induced diffe	yes	no	0.664	0.338	0.280	2e-11

>sp|Q7JUR6|GDAP2_DROME Protein GDAP2 homolog OS=Drosophila melanogaster GN=CG18812 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 9/158 (5%)

Query: 55  EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
           ED +++  +      G D+ G  +    GK+FPA  +  E+   Y+  K+   +  G + 
Sbjct: 373 EDLTEVSGIGCLYQSGVDRLGRPVIVFCGKWFPAQNIDLEKALLYLI-KLLDPIVKGDYV 431

Query: 115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLA---FATVGRF 171
           I Y HT +   +NYP    LR +Y  LP + K  L+  Y +HP  W+++    F T    
Sbjct: 432 ISYFHT-LTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTT---- 486

Query: 172 FLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHD 209
           F++  +  K+  +  +++L++ I K ++EIP ++  +D
Sbjct: 487 FMAPAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEYD 524

Drosophila melanogaster (taxid: 7227)

>sp|Q292F9|GDAP2_DROPS Protein GDAP2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA15091 PE=3 SV=1

 Score = 79.0 bits (193), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 43/158 (27%), Positives = 80/158 (50%), Gaps = 9/158 (5%)

Query: 55  EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
           ED +++  +      G D+ G  +    GK+FPA  +  E+   Y+  K+   +  G + 
Sbjct: 375 EDLTEVSGIGCLYQSGVDRLGRPVIVFCGKWFPAQNIDLEKALLYLI-KLLDPIVKGDYV 433

Query: 115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLA---FATVGRF 171
           I Y HT +   +NYP    LR +Y  LP + K  L+  Y +HP  W+++    F T    
Sbjct: 434 ISYFHT-LTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTT---- 488

Query: 172 FLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHD 209
           F++  +  K+  +  +++L++ I K ++EIP ++  +D
Sbjct: 489 FMAPAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEYD 526

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q5CZL1|GDAP2_XENTR Ganglioside-induced differentiation-associated protein 2 OS=Xenopus tropicalis PE=2 SV=1

 Score = 73.9 bits (180), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/158 (29%), Positives = 79/158 (50%), Gaps = 9/158 (5%)

Query: 55  EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
           ED SD+ +L+     G D  G  +  +VG+  P  ++  E+   Y  H +   +    + 
Sbjct: 328 EDLSDIAALKALYQSGVDNCGRTVMVVVGRNIPVLLIDMEKALLYFIH-MMDHVAAKEYV 386

Query: 115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLA---FATVGRF 171
           +VY HT +  E N+P    L+ +Y+ +  + K  L+ +YF+HP   S+++   F T    
Sbjct: 387 LVYFHT-LTGEHNHPDSDFLKNMYDIVDVKYKKNLKALYFVHPTFRSKVSSWFFTT---- 441

Query: 172 FLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHD 209
           F   GL  K+  V  L  L++ +   +IEIP FV ++D
Sbjct: 442 FTVSGLKDKVHQVESLHQLFSAVPPEQIEIPPFVLDYD 479

Xenopus tropicalis (taxid: 8364)

>sp|Q66HX8|GDAP2_DANRE Ganglioside-induced differentiation-associated protein 2 OS=Danio rerio GN=gdap2 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 96/188 (51%), Gaps = 6/188 (3%)

Query: 25  RPFLSKQQDTEIEEQEQEQWHDCAQYL--SPDEDFSDLDSLQFFCLQGSDKSGNRIFRLV 82
           R  + + Q +E+ +Q+Q Q  +  ++L  +  ED SD+ +L+     G D  G  +  +V
Sbjct: 307 RKLILQGQMSEVAQQKQHQ-RNYNRWLCKARAEDLSDIAALKALYQTGVDLCGRTVMVVV 365

Query: 83  GKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELP 142
           G+  P  ++  E+   Y  H +   +    + +VY HT +  E N+     L+ +Y+ + 
Sbjct: 366 GRNIPVMLIDMEKALLYFIH-VMDHITVKEYVMVYFHT-LTGEHNHLDTDFLKKLYDIVD 423

Query: 143 SRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIP 202
           ++ K  L+  YF+HP   S+++      F +S GL  K+ ++  LQ L+  +   +I+IP
Sbjct: 424 AKFKKNLRAFYFVHPTFRSKVSTWFFTTFSVS-GLKDKVHHIENLQQLFTCVLPEQIDIP 482

Query: 203 EFVQNHDN 210
            FV  +D+
Sbjct: 483 PFVLEYDS 490

Danio rerio (taxid: 7955)

>sp|Q66H63|GDAP2_RAT Ganglioside-induced differentiation-associated-protein 2 OS=Rattus norvegicus GN=Gdap2 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 6/187 (3%)

Query: 25  RPFLSKQQDTEIEEQEQEQWHDCAQYL--SPDEDFSDLDSLQFFCLQGSDKSGNRIFRLV 82
           R  + + Q +E   Q+Q Q  +  ++L  +  ED SD+ SL+     G D  G  +  +V
Sbjct: 298 RKLILQGQLSEAALQKQHQ-RNYNRWLCQARSEDLSDIASLKALYQTGVDNCGRTVMVVV 356

Query: 83  GKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELP 142
           G+  P  ++  ++   Y  H +   +    + +VY HT +  E N+     L+ +Y+ + 
Sbjct: 357 GRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSEYNHLDSDFLKKLYDVVD 414

Query: 143 SRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIP 202
            + K  L+ +YF+HP   S+++      F +SG L  KI +V  LQ L++ I   +I+ P
Sbjct: 415 IKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVSG-LKDKIHHVDSLQQLFSAISPEQIDFP 473

Query: 203 EFVQNHD 209
            FV  +D
Sbjct: 474 PFVLEYD 480

Rattus norvegicus (taxid: 10116)

>sp|Q5XGM5|GDAP2_XENLA Ganglioside-induced differentiation-associated protein 2 OS=Xenopus laevis PE=2 SV=1

 Score = 70.5 bits (171), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 49/166 (29%), Positives = 81/166 (48%), Gaps = 10/166 (6%)

Query: 55  EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
           ED SD+ +L+     G D  G  +  +VG+  P  ++  E+   Y  H +   +    + 
Sbjct: 328 EDLSDIAALKALYQSGVDNCGRSVMVVVGRNIPVLLIDMEKALLYFIH-MMDHVTAKDYV 386

Query: 115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLA---FATVGRF 171
           +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++   F T    
Sbjct: 387 LVYFHT-LTGEHNHLDSDFLKNMYDIIDVKYKKNLKALYFVHPTFRSKVSTWFFTT---- 441

Query: 172 FLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPL 217
           F   GL  K+  V  L  L+  I   +IEIP FV ++D   E+ PL
Sbjct: 442 FTVSGLKDKVHQVESLHQLFTAIPPEQIEIPPFVLDYD-ARENGPL 486

Xenopus laevis (taxid: 8355)

>sp|Q4R678|GDAP2_MACFA Ganglioside-induced differentiation-associated protein 2 OS=Macaca fascicularis GN=GDAP2 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 3/171 (1%)

Query: 55  EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
           ED SD+ SL+     G D  G  +  +VG+  P  ++  ++   Y  H +   +    + 
Sbjct: 293 EDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYV 351

Query: 115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLS 174
           +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S
Sbjct: 352 LVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS 410

Query: 175 GGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPD 225
            GL  KI +V  L  L++ I   +I+ P FV  +D        T Y   PD
Sbjct: 411 -GLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARENGPYYTSYPPSPD 460

Macaca fascicularis (taxid: 9541)

>sp|Q9NXN4|GDAP2_HUMAN Ganglioside-induced differentiation-associated protein 2 OS=Homo sapiens GN=GDAP2 PE=2 SV=1

 Score = 70.1 bits (170), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 3/171 (1%)

Query: 55  EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
           ED SD+ SL+     G D  G  +  +VG+  P  ++  ++   Y  H +   +    + 
Sbjct: 329 EDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYV 387

Query: 115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLS 174
           +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S
Sbjct: 388 LVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS 446

Query: 175 GGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPD 225
            GL  KI +V  L  L++ I   +I+ P FV  +D        T Y   PD
Sbjct: 447 -GLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARENGPYYTSYPPSPD 496

Homo sapiens (taxid: 9606)

>sp|Q9DBL2|GDAP2_MOUSE Ganglioside-induced differentiation-associated protein 2 OS=Mus musculus GN=Gdap2 PE=2 SV=1

 Score = 69.7 bits (169), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 51/187 (27%), Positives = 93/187 (49%), Gaps = 6/187 (3%)

Query: 25  RPFLSKQQDTEIEEQEQEQWHDCAQYL--SPDEDFSDLDSLQFFCLQGSDKSGNRIFRLV 82
           R  + + Q +E   Q+Q Q  +  ++L  +  ED SD+ SL+     G D  G  +  +V
Sbjct: 299 RKLILQGQLSEAALQKQHQ-RNYNRWLCQARSEDLSDIASLKALYQTGVDNCGRTVMVVV 357

Query: 83  GKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELP 142
           G+  P  ++  ++   Y  H +   +    + +VY HT +  + N+     L+ +Y+ + 
Sbjct: 358 GRNIPVTLIDMDKALLYFIH-VMDHIAVKEYVLVYFHT-LTSDYNHLDSDFLKKLYDVVD 415

Query: 143 SRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIP 202
            + K  L+ +YF+HP   S+++      F +S GL  KI +V  LQ L++ I   +I+ P
Sbjct: 416 IKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS-GLKDKIHHVDSLQQLFSAISPEQIDFP 474

Query: 203 EFVQNHD 209
            FV  +D
Sbjct: 475 PFVLEYD 481

Mus musculus (taxid: 10090)

>sp|Q2KIX2|GDAP2_BOVIN Ganglioside-induced differentiation-associated protein 2 OS=Bos taurus GN=GDAP2 PE=2 SV=1

 Score = 69.3 bits (168), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 81/171 (47%), Gaps = 3/171 (1%)

Query: 55  EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
           ED SD+ SL+     G D  G  +  +VG+  P  ++  ++   Y  H +   +    + 
Sbjct: 329 EDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYV 387

Query: 115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLS 174
           +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S
Sbjct: 388 LVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS 446

Query: 175 GGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPD 225
            GL  KI +V  L  L++ I   +I+ P FV  +D        T Y   PD
Sbjct: 447 -GLKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYDARENGPYYTSYLPSPD 496

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
224086882	252	predicted protein [Populus trichocarpa]	0.980	0.984	0.771	1e-108
118484260	252	unknown [Populus trichocarpa]	0.980	0.984	0.767	1e-107
225441313	247	PREDICTED: ganglioside-induced different	0.972	0.995	0.765	1e-107
255581381	261	conserved hypothetical protein [Ricinus	0.964	0.934	0.753	1e-106
351720921	245	uncharacterized protein LOC100527837 [Gl	0.964	0.995	0.698	1e-101
388503780	256	unknown [Lotus japonicus]	0.980	0.968	0.698	1e-101
363807340	246	uncharacterized protein LOC100810365 [Gl	0.968	0.995	0.694	5e-98
357509453	249	Ganglioside-induced differentiation-asso	0.940	0.955	0.687	9e-96
449437745	247	PREDICTED: ganglioside-induced different	0.972	0.995	0.658	3e-90
18398797	237	SEC14 cytosolic factor family protein /	0.932	0.995	0.705	6e-90

>gi|224086882|ref|XP_002307993.1| predicted protein [Populus trichocarpa] gi|222853969|gb|EEE91516.1| predicted protein [Populus trichocarpa]

 Score =  397 bits (1019), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 192/249 (77%), Positives = 210/249 (84%), Gaps = 1/249 (0%)

Query: 4   SCPPSDDLSVMVLASDLGIDARPFLS-KQQDTEIEEQEQEQWHDCAQYLSPDEDFSDLDS 62
           +   SDD SV VLASDLGIDARPFL+ K+++   E  E E WHDC Q    DEDFSDLD 
Sbjct: 2   ATSSSDDFSVFVLASDLGIDARPFLTNKEREQNQENPEPENWHDCCQDFISDEDFSDLDL 61

Query: 63  LQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCV 122
           LQFF LQGSDKSGNR+FR+VGKYFPA VV GERLKKYIFHKICSELP+GP CIVYMH+ V
Sbjct: 62  LQFFTLQGSDKSGNRVFRIVGKYFPAQVVSGERLKKYIFHKICSELPEGPLCIVYMHSTV 121

Query: 123 QKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIK 182
           QKEDN PG TILRWIYEELP+ IK+RLQ +YFIHPGL SRL FAT+GRFFLSGGLYWKIK
Sbjct: 122 QKEDNSPGVTILRWIYEELPAGIKDRLQTVYFIHPGLRSRLVFATLGRFFLSGGLYWKIK 181

Query: 183 YVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRH 242
           YVSRLQYLW DIKKGEIEIPEFVQNHDN+LE+RPLTDYGIEPD  HL E+P  AYSFGR+
Sbjct: 182 YVSRLQYLWEDIKKGEIEIPEFVQNHDNILENRPLTDYGIEPDPFHLSEMPMTAYSFGRY 241

Query: 243 DGNWGSREF 251
           +  W SREF
Sbjct: 242 EERWSSREF 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118484260|gb|ABK94010.1| unknown [Populus trichocarpa]

 Score =  394 bits (1012), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/249 (76%), Positives = 209/249 (83%), Gaps = 1/249 (0%)

Query: 4   SCPPSDDLSVMVLASDLGIDARPFLS-KQQDTEIEEQEQEQWHDCAQYLSPDEDFSDLDS 62
           +   SDD SV VLASDLGIDARPFL+ K+++   E  E E WHDC Q    DEDFSDLD 
Sbjct: 2   ATSSSDDFSVFVLASDLGIDARPFLTNKEREQNQENPEPENWHDCCQDFISDEDFSDLDL 61

Query: 63  LQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCV 122
           LQFF LQGSDKSGNR+FR+VGKYFPA VV GERLKKYIFHKICSELP+GP CIVY H+ V
Sbjct: 62  LQFFTLQGSDKSGNRVFRIVGKYFPAQVVSGERLKKYIFHKICSELPEGPLCIVYKHSTV 121

Query: 123 QKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIK 182
           QKEDN PG TILRWIYEELP+ IK+RLQ +YFIHPGL SRL FAT+GRFFLSGGLYWKIK
Sbjct: 122 QKEDNSPGVTILRWIYEELPAGIKDRLQTVYFIHPGLRSRLVFATLGRFFLSGGLYWKIK 181

Query: 183 YVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRH 242
           YVSRLQYLW DIKKGEIEIPEFVQNHDN+LE+RPLTDYGIEPD  HL E+P  AYSFGR+
Sbjct: 182 YVSRLQYLWEDIKKGEIEIPEFVQNHDNILENRPLTDYGIEPDPFHLSEMPMTAYSFGRY 241

Query: 243 DGNWGSREF 251
           +  W SREF
Sbjct: 242 EERWSSREF 250

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225441313|ref|XP_002275793.1| PREDICTED: ganglioside-induced differentiation-associated-protein 2 [Vitis vinifera] gi|297739900|emb|CBI30082.3| unnamed protein product [Vitis vinifera]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 193/252 (76%), Positives = 216/252 (85%), Gaps = 6/252 (2%)

Query: 1   MGSSCPPSDDLSVMVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYLSPDEDFSDL 60
           MGS  P  ++ SV+VLASDLGIDARPFL  Q   +IEEQ+ E WHDC+QYLS DEDFSDL
Sbjct: 1   MGSRSP--EEFSVLVLASDLGIDARPFLDAQ--AQIEEQD-ENWHDCSQYLS-DEDFSDL 54

Query: 61  DSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHT 120
           D LQF  +QGSDKSGNRI R+VGKY PAPVV GERLKKY+FHKI SELP+GPFCIVYMH+
Sbjct: 55  DLLQFIRIQGSDKSGNRILRIVGKYLPAPVVSGERLKKYVFHKIVSELPEGPFCIVYMHS 114

Query: 121 CVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWK 180
            VQKEDN PG TILRWIYEELPS  K+RLQ +YF+HPGL SRL FAT+GRFFLSGGLYWK
Sbjct: 115 TVQKEDNSPGLTILRWIYEELPSDFKDRLQTVYFVHPGLRSRLLFATLGRFFLSGGLYWK 174

Query: 181 IKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFG 240
           IKYVSRLQYLW D+KKGE+EIPEFVQ+HD+VLEHRPLTDYGIEPD LHL E+P+ AYSFG
Sbjct: 175 IKYVSRLQYLWEDVKKGEVEIPEFVQSHDDVLEHRPLTDYGIEPDPLHLTEMPSTAYSFG 234

Query: 241 RHDGNWGSREFM 252
           R++  W SRE M
Sbjct: 235 RYEERWTSRECM 246

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581381|ref|XP_002531499.1| conserved hypothetical protein [Ricinus communis] gi|223528886|gb|EEF30886.1| conserved hypothetical protein [Ricinus communis]

 Score =  389 bits (999), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 186/247 (75%), Positives = 213/247 (86%), Gaps = 3/247 (1%)

Query: 8   SDDLSVMVLASDLGIDARPFLSKQQ---DTEIEEQEQEQWHDCAQYLSPDEDFSDLDSLQ 64
           +DD SV VLASDLGIDA PFL+KQ+     E E++E + WHDC+QYL PDEDFSDLD LQ
Sbjct: 13  NDDFSVFVLASDLGIDATPFLNKQEREIKEEYEQEEADNWHDCSQYLLPDEDFSDLDLLQ 72

Query: 65  FFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQK 124
           FF LQGSDKSGNRIFR++GKYFPA V+  ERLKKYIFHK+CSELP+GPFCIVYMH+ VQK
Sbjct: 73  FFRLQGSDKSGNRIFRVIGKYFPAQVISAERLKKYIFHKMCSELPEGPFCIVYMHSTVQK 132

Query: 125 EDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYV 184
           EDN PG TILRWIYEELP+  KNRLQ++YFIHPGL SRL FAT+GRFFLSGGLYWKIKYV
Sbjct: 133 EDNSPGITILRWIYEELPADYKNRLQVVYFIHPGLRSRLVFATLGRFFLSGGLYWKIKYV 192

Query: 185 SRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDG 244
           SRLQYLW DIKKGE+EIPEFVQ+HD++LEHRPLTDYGIEPD  HL E+P  AYS G+++ 
Sbjct: 193 SRLQYLWEDIKKGEVEIPEFVQSHDDILEHRPLTDYGIEPDPFHLNEIPTTAYSLGKYEE 252

Query: 245 NWGSREF 251
            W +RE+
Sbjct: 253 RWAAREY 259

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720921|ref|NP_001238216.1| uncharacterized protein LOC100527837 [Glycine max] gi|255633342|gb|ACU17028.1| unknown [Glycine max]

 Score =  374 bits (960), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/252 (69%), Positives = 208/252 (82%), Gaps = 8/252 (3%)

Query: 1   MGSSCPPSDDLSVMVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYLSPDEDFSDL 60
           MG S   S+D SV+VLASDLG+DARPFL   Q     +QE+E WHDC+QYLSPDEDFSDL
Sbjct: 1   MGGS---SEDFSVVVLASDLGVDARPFLEHDQ-----QQEEENWHDCSQYLSPDEDFSDL 52

Query: 61  DSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHT 120
           D LQF  LQGSDK+ NRI R+VGKYFPA VV  ERLK+Y+F+KICSELP+GPFCI YMH+
Sbjct: 53  DQLQFLRLQGSDKNSNRILRIVGKYFPATVVSAERLKRYVFNKICSELPEGPFCIAYMHS 112

Query: 121 CVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWK 180
            VQKEDN PG TILRWIYEELP+  K+RLQ +YF+HPG  SRL  AT+GRFFLSGGLYWK
Sbjct: 113 TVQKEDNSPGITILRWIYEELPADFKDRLQTVYFVHPGFRSRLVIATLGRFFLSGGLYWK 172

Query: 181 IKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFG 240
           IKYVSRLQYLW+DIKKGEIEIP+FV++HD++LE+RPLTDYGIEPD  HL  +P+  YSFG
Sbjct: 173 IKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGMPSTTYSFG 232

Query: 241 RHDGNWGSREFM 252
           +++  W  R ++
Sbjct: 233 KYEERWAGRNYV 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503780|gb|AFK39956.1| unknown [Lotus japonicus]

 Score =  373 bits (957), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 176/252 (69%), Positives = 209/252 (82%), Gaps = 4/252 (1%)

Query: 1   MGSSCPPSDDLSVMVLASDLGIDARPFLSKQQDTEIE-EQEQEQWHDCAQYLSPDEDFSD 59
           MG S   S+D SV+VLASDL +DARPFL+ Q     E E E+E WHDC+Q+LSPDEDFSD
Sbjct: 1   MGDS---SEDFSVVVLASDLAVDARPFLAHQYQQGAEPEPEEESWHDCSQHLSPDEDFSD 57

Query: 60  LDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMH 119
           LD LQF  L GSDK+ +RI R+VGKY+PA VV  ERLK+Y+FH+ICSELPDGPFCIVYMH
Sbjct: 58  LDQLQFLTLHGSDKNNHRILRIVGKYYPATVVSAERLKRYVFHRICSELPDGPFCIVYMH 117

Query: 120 TCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYW 179
           + VQ EDN PG TILRWIYEELP+  K+RLQ +YFIHPGL SRL  AT+GRFFLSGGLYW
Sbjct: 118 STVQTEDNSPGLTILRWIYEELPADFKDRLQTVYFIHPGLRSRLVIATLGRFFLSGGLYW 177

Query: 180 KIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSF 239
           KIKYVSRLQYLW+DIKKGEIEIP+FV+ HD++LEHRPLTDYGIEPD  HL  +P++  SF
Sbjct: 178 KIKYVSRLQYLWDDIKKGEIEIPDFVRKHDDILEHRPLTDYGIEPDPFHLTGMPSLTPSF 237

Query: 240 GRHDGNWGSREF 251
           G+++  WG+R++
Sbjct: 238 GKYEDRWGARDY 249

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363807340|ref|NP_001242373.1| uncharacterized protein LOC100810365 [Glycine max] gi|255634536|gb|ACU17631.1| unknown [Glycine max]

 Score =  363 bits (931), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 175/252 (69%), Positives = 208/252 (82%), Gaps = 7/252 (2%)

Query: 1   MGSSCPPSDDLSVMVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYLSPDEDFSDL 60
           MG S   S+D SV+VLASD G+DARPFL    + + ++QE+E WHDC+QYLSPDEDFSDL
Sbjct: 1   MGGS---SEDFSVVVLASDFGVDARPFL----EHDQQQQEEENWHDCSQYLSPDEDFSDL 53

Query: 61  DSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHT 120
           D LQF  LQGSDK+ NRI R+VGKYFPA VV  ERLK+Y+FHKICSELP+GPFCIVYMH+
Sbjct: 54  DQLQFLRLQGSDKNSNRILRIVGKYFPATVVSAERLKRYVFHKICSELPEGPFCIVYMHS 113

Query: 121 CVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWK 180
            VQKEDN PG TIL WIYEELP+  K+RLQ +YFIHPG  SRL  AT+GR FLSGGLYWK
Sbjct: 114 TVQKEDNSPGITILSWIYEELPADFKDRLQTVYFIHPGFRSRLVIATLGRIFLSGGLYWK 173

Query: 181 IKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFG 240
           IKYVSRLQYLW+DIKKGEIEIP+FV++HD++LE+RPLTDYGIEPD  HL  +P+  YSFG
Sbjct: 174 IKYVSRLQYLWDDIKKGEIEIPDFVKSHDDILENRPLTDYGIEPDPFHLTGIPSTTYSFG 233

Query: 241 RHDGNWGSREFM 252
           +++  W  R ++
Sbjct: 234 KYEERWAGRNYV 245

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357509453|ref|XP_003625015.1| Ganglioside-induced differentiation-associated protein [Medicago truncatula] gi|87162529|gb|ABD28324.1| Cellular retinaldehyde-binding/triple function, C-terminal [Medicago truncatula] gi|355500030|gb|AES81233.1| Ganglioside-induced differentiation-associated protein [Medicago truncatula] gi|388519869|gb|AFK47996.1| unknown [Medicago truncatula]

 Score =  355 bits (912), Expect = 9e-96,   Method: Compositional matrix adjust.
 Identities = 167/243 (68%), Positives = 203/243 (83%), Gaps = 5/243 (2%)

Query: 8   SDDLSVMVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYLSPDEDFSDLDSLQFFC 67
           S++ SV+VLASDL +DARPFL        +++E+E WHDC+QYLSPDEDFSDL+ LQFF 
Sbjct: 4   SEEFSVVVLASDLAVDARPFL-----LHEQQEEEENWHDCSQYLSPDEDFSDLEFLQFFT 58

Query: 68  LQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDN 127
           LQG+DK+G RI R++GK++PA VV  ERLK+Y+FHK+ SELPDGPFCIVY+H+ V  EDN
Sbjct: 59  LQGTDKNGTRILRIIGKHYPATVVSAERLKRYVFHKLFSELPDGPFCIVYLHSTVTNEDN 118

Query: 128 YPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRL 187
            PG TILRWIYE+LP   K+RLQ +YFIHPGL SRL  AT+GRFFLSGGLYWKIKYVSRL
Sbjct: 119 SPGMTILRWIYEDLPDEFKDRLQTLYFIHPGLRSRLVMATLGRFFLSGGLYWKIKYVSRL 178

Query: 188 QYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDGNWG 247
           QYLW+DIKKGEIEIPEFVQ HD++LE+RPLTDYGIEPD  HL  +P++AYSFG+++  W 
Sbjct: 179 QYLWDDIKKGEIEIPEFVQKHDDILENRPLTDYGIEPDPFHLTGMPSVAYSFGKYEERWA 238

Query: 248 SRE 250
            R+
Sbjct: 239 GRD 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437745|ref|XP_004136651.1| PREDICTED: ganglioside-induced differentiation-associated protein 2-like [Cucumis sativus]

 Score =  337 bits (863), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 166/252 (65%), Positives = 199/252 (78%), Gaps = 6/252 (2%)

Query: 1   MGSSCPPSDDLSVMVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYLSPDEDFSDL 60
           MGS+    +D SV++L SD GID+RP L    D + E ++ + WHDC+Q LS DEDFSDL
Sbjct: 1   MGST---PNDFSVVILPSDGGIDSRPLLP---DKDKESEDADHWHDCSQNLSSDEDFSDL 54

Query: 61  DSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHT 120
           D LQF  L+G+DK+GNRI R+VGKYFPA VV GERLK+YIFHK  +EL +GPFCIVY HT
Sbjct: 55  DLLQFVRLEGTDKTGNRILRVVGKYFPAVVVSGERLKRYIFHKFQNELSEGPFCIVYFHT 114

Query: 121 CVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWK 180
             QK+DN  G TILRWIYEELPS  K+RLQ +YF+HPGL SRL  AT GRFFLSGGLYWK
Sbjct: 115 TDQKDDNCSGLTILRWIYEELPSDYKDRLQFLYFVHPGLRSRLVLATFGRFFLSGGLYWK 174

Query: 181 IKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFG 240
           IKY+SRLQYL  DIKKGE+EIP+FV++HD+VLEHRPLTDYGIEPD L++ EVP  A S  
Sbjct: 175 IKYLSRLQYLSEDIKKGEVEIPDFVKSHDDVLEHRPLTDYGIEPDSLNVTEVPFSANSVW 234

Query: 241 RHDGNWGSREFM 252
           R++  W SR++M
Sbjct: 235 RYEERWMSRQYM 246

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18398797|ref|NP_566369.1| SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana] gi|6056204|gb|AAF02821.1|AC009400_17 hypothetical protein [Arabidopsis thaliana] gi|15809948|gb|AAL06901.1| AT3g10210/F14P13_19 [Arabidopsis thaliana] gi|18958050|gb|AAL79598.1| AT3g10210/F14P13_19 [Arabidopsis thaliana] gi|332641351|gb|AEE74872.1| SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein [Arabidopsis thaliana]

 Score =  336 bits (861), Expect = 6e-90,   Method: Compositional matrix adjust.
 Identities = 170/241 (70%), Positives = 197/241 (81%), Gaps = 5/241 (2%)

Query: 8   SDDLSVMVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYLSPDEDFSDLDSLQFFC 67
           ++D SV+VLASDLGIDARPFL++  D +    EQE WHDC QYL  DEDFSDLD LQFF 
Sbjct: 2   AEDFSVVVLASDLGIDARPFLTRSDDVD----EQENWHDCPQYLG-DEDFSDLDLLQFFT 56

Query: 68  LQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDN 127
           LQG D+SGNRIFR+VGKYFPA VV  ERLKKYI  KI ++ P+GP C+VYMH+ VQK+DN
Sbjct: 57  LQGLDRSGNRIFRIVGKYFPARVVSAERLKKYISQKISNQCPEGPLCLVYMHSTVQKDDN 116

Query: 128 YPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRL 187
            PG TILRWIYE+LPS IK+RLQ++YFIHPGL SRL  AT+GR  LSGGLYWKIKYVSRL
Sbjct: 117 SPGITILRWIYEDLPSDIKDRLQLVYFIHPGLRSRLVIATLGRLLLSGGLYWKIKYVSRL 176

Query: 188 QYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDGNWG 247
           QYLW DIKKGE+EIP+FV+NHDNVLEHRPLTDYGIEPD   L EV + ++S  R++  W 
Sbjct: 177 QYLWEDIKKGEVEIPDFVKNHDNVLEHRPLTDYGIEPDPFQLSEVQSSSFSLNRYENRWV 236

Query: 248 S 248
           S
Sbjct: 237 S 237

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2076234	237	AT3G10210 "AT3G10210" [Arabido	0.932	0.995	0.688	7.5e-89
TAIR|locus:2128018	202	AT4G35750 "AT4G35750" [Arabido	0.660	0.826	0.491	9.1e-45
FB|FBgn0042135	540	CG18812 [Drosophila melanogast	0.588	0.275	0.272	8e-15
UNIPROTKB|Q292F9	542	GA15091 "Protein GDAP2 homolog	0.588	0.274	0.272	8.1e-15
UNIPROTKB|E1C8K9	496	GDAP2 "Uncharacterized protein	0.660	0.336	0.294	3.9e-14
RGD|1306050	497	Gdap2 "ganglioside-induced dif	0.660	0.336	0.290	6.4e-14
UNIPROTKB|Q66H63	497	Gdap2 "Ganglioside-induced dif	0.660	0.336	0.290	6.4e-14
UNIPROTKB|Q9NXN4	497	GDAP2 "Ganglioside-induced dif	0.660	0.336	0.290	8.2e-14
UNIPROTKB|F1SAY8	497	GDAP2 "Uncharacterized protein	0.660	0.336	0.290	8.2e-14
UNIPROTKB|Q2KIX2	497	GDAP2 "Ganglioside-induced dif	0.660	0.336	0.290	1.4e-13

TAIR|locus:2076234 AT3G10210 "AT3G10210" [Arabidopsis thaliana (taxid:3702)]

 Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
 Identities = 166/241 (68%), Positives = 192/241 (79%)

Query:     8 SDDLSVMVLASDLGIDARPFLSKXXXXXXXXXXXXXWHDCAQYLSPDEDFSDLDSLQFFC 67
             ++D SV+VLASDLGIDARPFL++             WHDC QYL  DEDFSDLD LQFF 
Sbjct:     2 AEDFSVVVLASDLGIDARPFLTRSDDVDEQEN----WHDCPQYLG-DEDFSDLDLLQFFT 56

Query:    68 LQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDN 127
             LQG D+SGNRIFR+VGKYFPA VV  ERLKKYI  KI ++ P+GP C+VYMH+ VQK+DN
Sbjct:    57 LQGLDRSGNRIFRIVGKYFPARVVSAERLKKYISQKISNQCPEGPLCLVYMHSTVQKDDN 116

Query:   128 YPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRL 187
              PG TILRWIYE+LPS IK+RLQ++YFIHPGL SRL  AT+GR  LSGGLYWKIKYVSRL
Sbjct:   117 SPGITILRWIYEDLPSDIKDRLQLVYFIHPGLRSRLVIATLGRLLLSGGLYWKIKYVSRL 176

Query:   188 QYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDHLHLPEVPNMAYSFGRHDGNWG 247
             QYLW DIKKGE+EIP+FV+NHDNVLEHRPLTDYGIEPD   L EV + ++S  R++  W 
Sbjct:   177 QYLWEDIKKGEVEIPDFVKNHDNVLEHRPLTDYGIEPDPFQLSEVQSSSFSLNRYENRWV 236

Query:   248 S 248
             S
Sbjct:   237 S 237

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2128018 AT4G35750 "AT4G35750" [Arabidopsis thaliana (taxid:3702)]

 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 82/167 (49%), Positives = 119/167 (71%)

Query:    60 LDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMH 119
             ++ L+ F + G DK G +I R++GK+FPA  +  + LKKY+  KI   L   PF ++Y+H
Sbjct:    14 IEKLEIFKIHGRDKRGRKILRIIGKFFPARFLSLDVLKKYLEEKIFPRLGRKPFAVLYVH 73

Query:   120 TCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYW 179
             T VQ+ +N+PG + LR IY+ +P  +++ LQ +YF+HPGL SRL  AT GRF  SGGLY 
Sbjct:    74 TGVQRSENFPGISALRAIYDAIPVNVRDNLQEVYFLHPGLQSRLFLATCGRFLFSGGLYG 133

Query:   180 KIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPLTDYGIEPDH 226
             K++Y+SR+ YLW  +++ EIE+PEFV +HD+ LE+RP+ DYG E DH
Sbjct:   134 KLRYISRVDYLWEHVRRNEIEMPEFVYDHDDDLEYRPMMDYGQESDH 180

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0042135 CG18812 [Drosophila melanogaster (taxid:7227)]

 Score = 197 (74.4 bits), Expect = 8.0e-15, P = 8.0e-15
 Identities = 43/158 (27%), Positives = 80/158 (50%)

Query:    55 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
             ED +++  +      G D+ G  +    GK+FPA  +  E+   Y+  K+   +  G + 
Sbjct:   373 EDLTEVSGIGCLYQSGVDRLGRPVIVFCGKWFPAQNIDLEKALLYLI-KLLDPIVKGDYV 431

Query:   115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLA---FATVGRF 171
             I Y HT +   +NYP    LR +Y  LP + K  L+  Y +HP  W+++    F T    
Sbjct:   432 ISYFHT-LTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTT---- 486

Query:   172 FLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHD 209
             F++  +  K+  +  +++L++ I K ++EIP ++  +D
Sbjct:   487 FMAPAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEYD 524

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q292F9 GA15091 "Protein GDAP2 homolog" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 197 (74.4 bits), Expect = 8.1e-15, P = 8.1e-15
 Identities = 43/158 (27%), Positives = 80/158 (50%)

Query:    55 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
             ED +++  +      G D+ G  +    GK+FPA  +  E+   Y+  K+   +  G + 
Sbjct:   375 EDLTEVSGIGCLYQSGVDRLGRPVIVFCGKWFPAQNIDLEKALLYLI-KLLDPIVKGDYV 433

Query:   115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLA---FATVGRF 171
             I Y HT +   +NYP    LR +Y  LP + K  L+  Y +HP  W+++    F T    
Sbjct:   434 ISYFHT-LTSTNNYPSLHWLREVYSVLPYKYKKNLKAFYIVHPTFWTKMMTWWFTT---- 488

Query:   172 FLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHD 209
             F++  +  K+  +  +++L++ I K ++EIP ++  +D
Sbjct:   489 FMAPAIKAKVHSLPGVEHLYSAITKDQLEIPAYITEYD 526

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|E1C8K9 GDAP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 3.9e-14, P = 3.9e-14
 Identities = 51/173 (29%), Positives = 86/173 (49%)

Query:    55 EDFSDLDSLQ-FFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPF 113
             ED SD+ SL+  +   G D  G  +  +VG+  P  ++  E+   Y  H +   +    +
Sbjct:   327 EDLSDIASLKALYQTVGVDNCGRTVMVVVGRNIPVTLIDMEKALLYFIH-VMDHIAVKEY 385

Query:   114 CIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFL 173
              +VY HT +  + N      L+ +Y+ + ++ K  L+ +YF+HP   S+++      F +
Sbjct:   386 VLVYFHT-LTNDYNQLDSNFLKKLYDVVDAKYKRNLKALYFVHPTFRSKVSTWFFTTFTV 444

Query:   174 SGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPL-TDYGIEPD 225
             SG L  KI YV  LQ L+  I   +I++P FV  +D   E+ P  + Y   PD
Sbjct:   445 SG-LKDKIHYVESLQQLFTAIPPEQIDLPPFVLEYD-ARENGPYYSSYPPSPD 495

GO:0032526 "response to retinoic acid" evidence=IEA

RGD|1306050 Gdap2 "ganglioside-induced differentiation-associated-protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 6.4e-14, P = 6.4e-14
 Identities = 50/172 (29%), Positives = 84/172 (48%)

Query:    55 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
             ED SD+ SL+     G D  G  +  +VG+  P  ++  ++   Y  H +   +    + 
Sbjct:   329 EDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYV 387

Query:   115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLS 174
             +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S
Sbjct:   388 LVYFHT-LTSEYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS 446

Query:   175 GGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRP-LTDYGIEPD 225
             G L  KI +V  LQ L++ I   +I+ P FV  +D   E+ P    Y   PD
Sbjct:   447 G-LKDKIHHVDSLQQLFSAISPEQIDFPPFVLEYD-ARENGPYFASYPPSPD 496

GO:0032526 "response to retinoic acid" evidence=IEA;ISO

UNIPROTKB|Q66H63 Gdap2 "Ganglioside-induced differentiation-associated-protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 6.4e-14, P = 6.4e-14
 Identities = 50/172 (29%), Positives = 84/172 (48%)

Query:    55 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
             ED SD+ SL+     G D  G  +  +VG+  P  ++  ++   Y  H +   +    + 
Sbjct:   329 EDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYV 387

Query:   115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLS 174
             +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S
Sbjct:   388 LVYFHT-LTSEYNHLDSDFLKKLYDVVDIKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS 446

Query:   175 GGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRP-LTDYGIEPD 225
             G L  KI +V  LQ L++ I   +I+ P FV  +D   E+ P    Y   PD
Sbjct:   447 G-LKDKIHHVDSLQQLFSAISPEQIDFPPFVLEYD-ARENGPYFASYPPSPD 496

GO:0032526 "response to retinoic acid" evidence=IEA

UNIPROTKB|Q9NXN4 GDAP2 "Ganglioside-induced differentiation-associated protein 2" [Homo sapiens (taxid:9606)]

 Score = 187 (70.9 bits), Expect = 8.2e-14, P = 8.2e-14
 Identities = 50/172 (29%), Positives = 84/172 (48%)

Query:    55 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
             ED SD+ SL+     G D  G  +  +VG+  P  ++  ++   Y  H +   +    + 
Sbjct:   329 EDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYV 387

Query:   115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLS 174
             +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S
Sbjct:   388 LVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS 446

Query:   175 GGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPL-TDYGIEPD 225
             G L  KI +V  L  L++ I   +I+ P FV  +D   E+ P  T Y   PD
Sbjct:   447 G-LKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYD-ARENGPYYTSYPPSPD 496

GO:0032526 "response to retinoic acid" evidence=IEA

UNIPROTKB|F1SAY8 GDAP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 187 (70.9 bits), Expect = 8.2e-14, P = 8.2e-14
 Identities = 50/172 (29%), Positives = 84/172 (48%)

Query:    55 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
             ED SD+ SL+     G D  G  +  +VG+  P  ++  ++   Y  H +   +    + 
Sbjct:   329 EDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYV 387

Query:   115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLS 174
             +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S
Sbjct:   388 LVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS 446

Query:   175 GGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPL-TDYGIEPD 225
             G L  KI +V  L  L++ I   +I+ P FV  +D   E+ P  T Y   PD
Sbjct:   447 G-LKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYD-ARENGPYYTSYPPSPD 496

GO:0032526 "response to retinoic acid" evidence=IEA

UNIPROTKB|Q2KIX2 GDAP2 "Ganglioside-induced differentiation-associated protein 2" [Bos taurus (taxid:9913)]

 Score = 185 (70.2 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 50/172 (29%), Positives = 84/172 (48%)

Query:    55 EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
             ED SD+ SL+     G D  G  +  +VG+  P  ++  ++   Y  H +   +    + 
Sbjct:   329 EDLSDIASLKALYQTGVDNCGRTVMVVVGRNIPVTLIDMDKALLYFIH-VMDHIAVKEYV 387

Query:   115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLS 174
             +VY HT +  E N+     L+ +Y+ +  + K  L+ +YF+HP   S+++      F +S
Sbjct:   388 LVYFHT-LTSEYNHLDSDFLKKLYDVVDVKYKRNLKAVYFVHPTFRSKVSTWFFTTFSVS 446

Query:   175 GGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLEHRPL-TDYGIEPD 225
             G L  KI +V  L  L++ I   +I+ P FV  +D   E+ P  T Y   PD
Sbjct:   447 G-LKDKIHHVDSLHQLFSAISPEQIDFPPFVLEYD-ARENGPYYTSYLPSPD 496

GO:0032526 "response to retinoic acid" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00060384 SubName- Full=Putative uncharacterized protein; (252 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
pfam13716	149	pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain	1e-32
smart00516	158	smart00516, SEC14, Domain in homologues of a S	2e-16
cd00170	157	cd00170, SEC14, Sec14p-like lipid-binding domain	2e-12

>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain

 Score =  116 bits (292), Expect = 1e-32
 Identities = 42/150 (28%), Positives = 66/150 (44%), Gaps = 6/150 (4%)

Query: 65  FFCLQGSDKSGNRIFRLVGKYFPAPVVG-GERLKKYIFHKICSELPDGPFCIVYMHTCVQ 123
            F   G DK G  +     K  PA  +   +RL  Y+   +  EL    F +V  HT V 
Sbjct: 2   AFLSGGRDKEGRPVLVFDAKRLPASDLDDLDRLLFYLLSILSEELKPKGFVVVIDHTGVT 61

Query: 124 KEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYW-KIK 182
           +  N P ++ L+ +Y+ LP      L+ +Y +HP  + +    T+GR F S  L+  K+ 
Sbjct: 62  R--NKPSWSWLKKLYKLLPRAFPKNLKAVYIVHPSTFLKKFLKTLGRLFSSKKLFKKKVI 119

Query: 183 YVSRLQYLWNDIKKGE--IEIPEFVQNHDN 210
           YVS L  L   I   +  +E+   +     
Sbjct: 120 YVSSLSELSEYIDPTQLPLELGGVLSYDHE 149

This family includes divergent members of the CRAL-TRIO domain family. This family includes ECM25 that contains a divergent CRAL-TRIO domain identified by Gallego and colleagues. Length = 149

>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S

 Score = 73.9 bits (182), Expect = 2e-16
 Identities = 32/162 (19%), Positives = 55/162 (33%), Gaps = 16/162 (9%)

Query: 59  DLDSLQFFCLQ--GSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKI----CSELPDGP 112
           +L+ L+ +     G DK G  +       F    V  E L +Y+ + +      E   G 
Sbjct: 1   ELELLKAYIPGGRGYDKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQEEKKTGG 60

Query: 113 FCIVYMHTCVQKEDNYPG--FTI--LRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATV 168
              +   T +            +  LR I + L      RL  +Y I+P  + R     +
Sbjct: 61  ---IEGFTVIFDLKGLSMSNPDLSVLRKILKILQDHYPERLGKVYIINPPWFFR-VLWKI 116

Query: 169 GRFFLSGGLYWKIKYVSRL--QYLWNDIKKGEIEIPEFVQNH 208
            + FL      KI++V     + L   I K ++         
Sbjct: 117 IKPFLDEKTREKIRFVGNDSKEELLEYIDKEQLPEELGGTLD 158

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158

>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain

 Score = 62.8 bits (153), Expect = 2e-12
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 10/156 (6%)

Query: 54  DEDFSDLDSLQFFCLQGSDKSGNRIFRLV-GKYFPAPVVGGERLKKYIFHKICSELPDGP 112
            E+  +L       L G DK G  +  +  G    +  +  E L +Y+ + +   L +  
Sbjct: 1   LEELKELGK--VGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDD 58

Query: 113 FCIVYMHTCVQKEDN-----YPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFAT 167
             +      +  +        P  ++L+ I + L      RL+ +Y I+P  + ++ +  
Sbjct: 59  EQVEGFVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKI 118

Query: 168 VGRFFLSGGLYWKIKYV-SRLQYLWNDIKKGEIEIP 202
           V + FLS     KI ++ S  + L   I K ++   
Sbjct: 119 V-KPFLSEKTRKKIVFLGSDKEELLKYIDKEQLPEE 153

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
PF13716	149	CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q	99.97
KOG4406	467	consensus CDC42 Rho GTPase-activating protein [Sig	99.97
KOG1470	324	consensus Phosphatidylinositol transfer protein PD	99.92
smart00516	158	SEC14 Domain in homologues of a S. cerevisiae phos	99.85
cd00170	157	SEC14 Sec14p-like lipid-binding domain. Found in s	99.82
PF00650	159	CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T	99.72
KOG1471	317	consensus Phosphatidylinositol transfer protein SE	99.6
KOG2633	200	consensus Hismacro and SEC14 domain-containing pro	96.02
KOG1826	2724	consensus Ras GTPase activating protein RasGAP/neu	94.72

>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A

Probab=99.97  E-value=5.5e-31  Score=215.88  Aligned_cols=144  Identities=28%  Similarity=0.481  Sum_probs=112.3

Q ss_pred             CeEeeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcCCccccCCCChHHHHHHHHHHchHH
Q 025383           65 FFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSR  144 (253)
Q Consensus        65 iiy~~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~tg~s~~~n~p~~~~l~~~y~~l~~~  144 (253)
                      +++.+|+|++||||+++.++++ ....|++.++.|++.++.+.+.+++|+||+|++|.+ ..|.|+++|++++++.+|..
T Consensus         3 ~~~~gG~d~~g~pV~~~~~~~~-~~~~~~~~ll~yl~~~l~~~~~~~~f~vVid~~~~~-~~~~~~~~~l~~~~~~l~~~   80 (149)
T PF13716_consen    3 FFYPGGRDREGRPVVVFIASRL-PSSDDLERLLLYLLSTLSEEVVDKPFSVVIDHTGFS-RSSEPSLSWLKQLYKLLPRK   80 (149)
T ss_dssp             E-EEEEEBTTS-EEEEEEGGG--C-TTHHHHHHHHHHHHH-TTTTTS-EEEEEE-TT---GGG---HHHHHHTTTSS-HH
T ss_pred             EEEecccCCCcCEEEEEECCcC-cchhhHHHHHHHHHHhhhHHhcCCCEEEEEEcCCCc-cccCCchHHHHHHHHHHHHH
Confidence            4578999999999999999999 444699999999999995578899999999999986 48899999999999999999


Q ss_pred             HHhccceEEEEcCChHHHHHHHhhccccccccc-cCeEEEeCChhhHHhccCCCCC--CCChhHHhhhhh
Q 025383          145 IKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGL-YWKIKYVSRLQYLWNDIKKGEI--EIPEFVQNHDNV  211 (253)
Q Consensus       145 ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~-~~KI~fV~~l~eL~~~I~~dqL--~iP~~V~~~D~~  211 (253)
                      +++||+++|||||++|+|.+++.+.+++++.|+ ++||+|++++++|.++|+++||  .+| .|++||.+
T Consensus        81 ~~~nl~~vyiv~p~~~~k~~~~~~~~~~~~~~~~~~kv~~~~sl~~L~~~i~~~qL~~~lp-~~~~~d~~  149 (149)
T PF13716_consen   81 YKKNLKKVYIVHPNWFLKKILATLLRPFVSSKFWKKKVVYVSSLSELSKHIDPSQLPESLP-GVLQYDHE  149 (149)
T ss_dssp             HHHTEEEEEEES--HHHHHHHHHTTTTGGGGTT--TTEEEESSTCGGGGTSGGGG-------HHH-----
T ss_pred             HhhceEEEEEECCCHHHHHHHHHHhcccccccccceEEEEECCHHHHHhhCCHHHhcccCC-CEEecCcC
Confidence            999999999999999999999778899999999 9999999999999999999999  999 99999964

>KOG4406 consensus CDC42 Rho GTPase-activating protein [Signal transduction mechanisms; Cytoskeleton]

Probab=99.97  E-value=1.4e-30  Score=241.23  Aligned_cols=160  Identities=24%  Similarity=0.437  Sum_probs=147.0

Q ss_pred             CCcchhhhhhc--CCeEeecc--CCCCCeEEEEEeecCCC-CCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcCCccccCC
Q 025383           53 PDEDFSDLDSL--QFFCLQGS--DKSGNRIFRLVGKYFPA-PVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDN  127 (253)
Q Consensus        53 ~~e~~~~l~~~--~iiy~~G~--Dk~GRPVvvi~~~~~p~-~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~tg~s~~~n  127 (253)
                      .+..|.++.++  +++.+.|.  |++||+|+++.+|++|+ +++|.-+++.|+++++| .+++++|++||||.|+. ++|
T Consensus        67 ~ed~fyd~~~H~~ei~qvi~~~~D~~gr~iivv~a~rlp~~~eld~~~li~~~v~~id-~~Ve~DYt~vYfh~gl~-s~n  144 (467)
T KOG4406|consen   67 KEDPFYDIARHEREILQVIGDAKDKQGRKIIVVYACRLPSSSELDDIRLISYLVYTID-KYVENDYTLVYFHHGLP-SDN  144 (467)
T ss_pred             ccccHHHHHHhhhheeeeccCcccccCCeeEEEEEecCCchhhhhhHHHHHHHHHHHH-HHHhccceeeehhcCCc-ccc
Confidence            35668899888  88777665  99999999999999995 56777779999999997 78888999999999986 699


Q ss_pred             CChHHHHHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCChhhHHhccCCCCCCCChhHHh
Q 025383          128 YPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQN  207 (253)
Q Consensus       128 ~p~~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~l~eL~~~I~~dqL~iP~~V~~  207 (253)
                      .|+++|+.++|..++++|+||||++|+|||+||+|+ +|.+++||||.||.+||+|+++++||.++|..++|.+|+.|++
T Consensus       145 kp~l~~l~~aYke~Dr~~~KNlKalYvvHptwfikv-i~n~~kplIS~KF~rKi~Y~n~lseL~~~l~l~rL~lP~~v~~  223 (467)
T KOG4406|consen  145 KPYLQLLFDAYKELDRNFKKNLKALYVVHPTWFIKV-IWNLFKPLISLKFTRKIIYFNSLSELFEALKLNRLKLPPEVLK  223 (467)
T ss_pred             cchHHHHHHHHHHHHHHHhhhhhheEEecHHHHHHH-HHHHHhhhcchhhhceeEEeehHHHHHHhhhhhhhcCChhhhh
Confidence            999999999999999999999999999999999998 4578899999999999999999999999999999999999999


Q ss_pred             hhhhhcCC
Q 025383          208 HDNVLEHR  215 (253)
Q Consensus       208 ~D~~l~~~  215 (253)
                      ||+.+...
T Consensus       224 ~D~~~~s~  231 (467)
T KOG4406|consen  224 HDDKLLSK  231 (467)
T ss_pred             hhhccccc
Confidence            99998754

>KOG1470 consensus Phosphatidylinositol transfer protein PDR16 and related proteins [Lipid transport and metabolism]

Probab=99.92  E-value=5.9e-26  Score=207.12  Aligned_cols=173  Identities=14%  Similarity=0.166  Sum_probs=149.9

Q ss_pred             EEEeeccCCCcccccccccchhHhHHHhhhhhhhcc--c-CCCCcchhhhhhcCCeEeeccCCCCCeEEEEEeecCCCCC
Q 025383           14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQ--Y-LSPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPV   90 (253)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~-is~~e~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~   90 (253)
                      +|+||..+|+||++|+...         ..||..+.  . |...| +..-.+.|..|++|.|+.||||++++++.-..+.
T Consensus        55 fLrAr~wnv~kA~kml~~t---------L~WR~~~~~~~~~~~~E-v~~e~~tGK~yi~G~D~~gRPVl~~~~~~~~qn~  124 (324)
T KOG1470|consen   55 FLRARKWNVKKASKMLSNT---------LKWRRSFGPEEVIEADE-VAAELETGKAYILGHDKDGRPVLYLRPRPHRQNT  124 (324)
T ss_pred             HHHHcCCcHHHHHHHHHHH---------hHHHHhcCCccccCHHH-HHHHhhcCcEEEecccCCCCeEEEEecCCCCCCC
Confidence            6899999999999999655         89998773  1 32233 6666678889999999999999999999444445


Q ss_pred             CCHHHHHHHHHHHhhhhC-----CCCCEEEEEEcCCccccCCCChHHHHHHHHHHchHHHHhccceEEEEcCChHHHHHH
Q 025383           91 VGGERLKKYIFHKICSEL-----PDGPFCIVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAF  165 (253)
Q Consensus        91 ~d~e~ll~yvi~~Ld~~~-----~~~~f~iVy~~tg~s~~~n~p~~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~  165 (253)
                      .+.+.+.++++++||..+     +++.++++++.+|++. .|. +++.++.+..+|+.+||+||+.++|+||+|++.. +
T Consensus       125 ~t~~~~~r~~Vy~mE~Ai~~lp~~qe~~~~L~D~~~fs~-sN~-d~~~~k~~~~~lq~hYPErLg~a~l~~~P~iF~~-~  201 (324)
T KOG1470|consen  125 KTQKELERLLVYTLENAILFLPPGQEQFVWLFDLTGFSM-SNP-DIKFLKELLHILQDHYPERLGKALLVNAPWIFQP-F  201 (324)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCCCCcceEEEEEecccCcc-cCC-CcHHHHHHHHHHHHhChHHhhhhhhcCChHHHHH-H
Confidence            788999999999998655     6788999999999985 565 5999999999999999999999999999988887 5


Q ss_pred             HhhccccccccccCeEEEeCChhhHHhccCCCCC
Q 025383          166 ATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEI  199 (253)
Q Consensus       166 ~~l~kpFis~k~~~KI~fV~~l~eL~~~I~~dqL  199 (253)
                      |++++|||++++..||+|+.+..+|.++|+++++
T Consensus       202 wkiikpflDp~t~~Kv~F~~~~~~l~~~~d~~~l  235 (324)
T KOG1470|consen  202 WKIIKPFLDPKTASKVKFVEPKDDLSEYFDESQL  235 (324)
T ss_pred             HHHhhhccChhhhceeEEecChhHHHhhCCcccc
Confidence            6899999999999999999999999999999995

>smart00516 SEC14 Domain in homologues of a S

Probab=99.85  E-value=9.5e-21  Score=154.84  Aligned_cols=129  Identities=24%  Similarity=0.357  Sum_probs=114.0

Q ss_pred             ccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhCC-------CCCEEEEEEcCCccccCCCChHHHHHHHHHHch
Q 025383           70 GSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELP-------DGPFCIVYMHTCVQKEDNYPGFTILRWIYEELP  142 (253)
Q Consensus        70 G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~-------~~~f~iVy~~tg~s~~~n~p~~~~l~~~y~~l~  142 (253)
                      |.|++||||+++.++.++.+..+.++++++++..+|..+.       .+.+++|++.+|++. .+ +++++++++++.++
T Consensus        14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~-~~-~~~~~lk~~~~~~~   91 (158)
T smart00516       14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSM-SN-PDLSVLRKILKILQ   91 (158)
T ss_pred             CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCc-cc-ccHHHHHHHHHHHH
Confidence            7999999999999999887778999999999999874332       246899999999874 34 67999999999999


Q ss_pred             HHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCC--hhhHHhccCCCCCCCCh
Q 025383          143 SRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSR--LQYLWNDIKKGEIEIPE  203 (253)
Q Consensus       143 ~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~--l~eL~~~I~~dqL~iP~  203 (253)
                      ..||+||+++|||||++++++++ +++++|+++++++||+++++  .++|.++|++++  ||.
T Consensus        92 ~~yp~~l~~i~ivn~p~~~~~~~-~~~~~~l~~~~~~ki~~~~~~~~~~L~~~i~~~~--lP~  151 (158)
T smart00516       92 DHYPERLGKVLIINPPWFFRVLW-KIIKPFLDEKTREKIRFVGNDSKEELLEYIDPEQ--LPE  151 (158)
T ss_pred             HHhHHHhCeEEEECCCHHHHHHH-HHHHhhcChhhhccEEEeCCCCHHHHHhhCCHhh--CcH
Confidence            99999999999999999999866 68899999999999999987  899999998875  665

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>cd00170 SEC14 Sec14p-like lipid-binding domain

Probab=99.82  E-value=1.2e-19  Score=146.08  Aligned_cols=135  Identities=20%  Similarity=0.294  Sum_probs=112.2

Q ss_pred             CCeEeeccCCCCCeEEEEEeecC-CCCCCCHHHHHHHHHHHhhhhCC-----CCCEEEEEEcCCccccCCC-ChHHHHHH
Q 025383           64 QFFCLQGSDKSGNRIFRLVGKYF-PAPVVGGERLKKYIFHKICSELP-----DGPFCIVYMHTCVQKEDNY-PGFTILRW  136 (253)
Q Consensus        64 ~iiy~~G~Dk~GRPVvvi~~~~~-p~~~~d~e~ll~yvi~~Ld~~~~-----~~~f~iVy~~tg~s~~~n~-p~~~~l~~  136 (253)
                      ++.+..|.|++||||+++..+.. +....+.++++++++..+|..+.     .+.+++|+|.+|++. .+. +...++++
T Consensus         9 ~~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~i~D~~~~~~-~~~~~~~~~~k~   87 (157)
T cd00170           9 KVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQEDDEQVEGFVVIIDLKGLSL-SHLLPDPSLLKK   87 (157)
T ss_pred             cccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhhhhcccceEEEEECCCCCh-hccchhHHHHHH
Confidence            45455667999999999999943 33445668899999988874331     147899999999874 443 36889999


Q ss_pred             HHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCC-hhhHHhccCCCCCC
Q 025383          137 IYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSR-LQYLWNDIKKGEIE  200 (253)
Q Consensus       137 ~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~-l~eL~~~I~~dqL~  200 (253)
                      +++.++..||+||+++|||||++++++++ +++++|+++++++||+++++ .++|.++|++++|.
T Consensus        88 ~~~~~~~~yp~~l~~v~ivn~p~~~~~~~-~~~~~~l~~~~~~ki~~~~~~~~~L~~~i~~~~Lp  151 (157)
T cd00170          88 ILKILQDNYPERLKAVYIINPPWFFKVLW-KIVKPFLSEKTRKKIVFLGSDKEELLKYIDKEQLP  151 (157)
T ss_pred             HHHHHHHhChHhhCeEEEECCCHhHHHHH-HHHHHhcCHhhhhhEEEecCCHHHHHhhCChhhCc
Confidence            99999999999999999999999999966 68899999999999999998 99999999998753

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=99.72  E-value=4.6e-18  Score=139.08  Aligned_cols=139  Identities=19%  Similarity=0.219  Sum_probs=105.8

Q ss_pred             hhhhcCCeEeeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhC-------CCCCEEEEEEcCCccccCCCCh-
Q 025383           59 DLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSEL-------PDGPFCIVYMHTCVQKEDNYPG-  130 (253)
Q Consensus        59 ~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~-------~~~~f~iVy~~tg~s~~~n~p~-  130 (253)
                      ++.+.++.+..|+|++||||+++..+++.......+++.++++..+|..+       ..+.+++|+|.+|++. .+.+. 
T Consensus         2 ~~~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~-~~~~~~   80 (159)
T PF00650_consen    2 EILKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSL-SNFDWW   80 (159)
T ss_dssp             HHHTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--H-HHHHCH
T ss_pred             HHHCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceE-eccccc
Confidence            46778899999999999999999999887666677888888888887433       1245899999999873 44332 


Q ss_pred             -HHHHHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCCh---hhHHhccCCCCC
Q 025383          131 -FTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRL---QYLWNDIKKGEI  199 (253)
Q Consensus       131 -~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~l---~eL~~~I~~dqL  199 (253)
                       .+.++.+.+.++..||++|+.+||+|+++++++++ ++++||+++++.+||+++++.   ++|.++|+.++|
T Consensus        81 ~~~~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~-~~~~~~l~~~~~~ki~~~~~~~~~~~l~~~i~~~~l  152 (159)
T PF00650_consen   81 PISFLKKIIQLLQDHYPERLGKIYIINAPWFFRVLW-KIVKPFLSPKTREKIVFHSGSDWKAKLKEYIDPEQL  152 (159)
T ss_dssp             HHHHHHHHHHHHHHHSTTTEEEEEEES--TTHHHHH-HHHGGGS-HHHHCTEEEECTTCHCHHHCCCSTGGGS
T ss_pred             hhhhhhhhhhhhcccCCccceeEEEEecChhhhhhH-hHHHhhcCHhhheeEEEECCcccHHHHHhhCCHhHC
Confidence             78999999999999999999999999999999855 688999999999999999543   479999998654

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....

>KOG1471 consensus Phosphatidylinositol transfer protein SEC14 and related proteins [Lipid transport and metabolism]

Probab=99.60  E-value=9.7e-16  Score=140.08  Aligned_cols=176  Identities=18%  Similarity=0.149  Sum_probs=128.4

Q ss_pred             EEEeeccCCCcccccccccchhHhHHHhhhhhhhcc--cCCCC-cchhhhhhcCCeEeeccCCCCCeEEEEEeecCCCCC
Q 025383           14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQ--YLSPD-EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPV   90 (253)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~is~~-e~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~   90 (253)
                      +|+|+++++++|..|+.++         .+|+.-..  .|... +...++.+......+|.|+.|+||++-.......+.
T Consensus        51 fLra~~f~ve~a~~~l~~~---------l~~r~~~~~d~i~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~g~~~~~~  121 (317)
T KOG1471|consen   51 FLRARKFDVEKAKQMLKRY---------LNWRKRNKLDEIFEDFEEDDELLKYYPQGLHGVDKEGRPVYIERLGKIDPKG  121 (317)
T ss_pred             HHHHccCCHHHHHHHHHHH---------HHHHHHhCCccHhhccccchhhhhhccccccccCCCCCEEEEeccCCCCccc
Confidence            5899999999999999765         56775442  22222 333444443445778999999999998888664332


Q ss_pred             C----CHHHHHHHHHHHhh-----------hhC--CCCCEEEEEEcCCccccCC-CChHHHHHHHHHHchHHHHhccceE
Q 025383           91 V----GGERLKKYIFHKIC-----------SEL--PDGPFCIVYMHTCVQKEDN-YPGFTILRWIYEELPSRIKNRLQIM  152 (253)
Q Consensus        91 ~----d~e~ll~yvi~~Ld-----------~~~--~~~~f~iVy~~tg~s~~~n-~p~~~~l~~~y~~l~~~ykknLk~v  152 (253)
                      +    ...+.+++.+.-.+           +..  ...-.+.|.+..|++...- .+....++++...++.+||++|+++
T Consensus       122 l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~~~~~~~g~~~I~Dl~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~  201 (317)
T KOG1471|consen  122 LLKRTGSLDYLKYHFKEFEKVFKLVLELELKTGERQISGIVTIFDLKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRI  201 (317)
T ss_pred             ceeeccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeEEEEECCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceE
Confidence            2    23333333222221           111  3455788999999985222 4678899999999999999999999


Q ss_pred             EEEcCChHHHHHHHhhccccccccccCeEE-E-eCChhhHHhccCCCCC
Q 025383          153 YFIHPGLWSRLAFATVGRFFLSGGLYWKIK-Y-VSRLQYLWNDIKKGEI  199 (253)
Q Consensus       153 YiVHP~~~~k~~~~~l~kpFis~k~~~KI~-f-V~~l~eL~~~I~~dqL  199 (253)
                      ||||.++++.+ +|++++|||++++++||+ + .++.++|.++|+++.|
T Consensus       202 ~iIN~P~~f~~-~~~~ikpfL~~kt~~ki~~~~~~~~~~L~k~i~~~~L  249 (317)
T KOG1471|consen  202 HIINAPTIFSA-LWKVVKPFLDEKTRKKIHVLHSKDKESLLKYIPPEVL  249 (317)
T ss_pred             EEEcCchhHHH-HHHHHhccCCHHHHhhheecCCCchhhhhhhCCHhhC
Confidence            99998888886 558999999999999999 3 3688999999999876

>KOG2633 consensus Hismacro and SEC14 domain-containing proteins [Chromatin structure and dynamics; Transcription]

Probab=96.02  E-value=3e-05  Score=67.08  Aligned_cols=176  Identities=30%  Similarity=0.335  Sum_probs=132.0

Q ss_pred             CcchhhhhhcCCeEeeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcC---CccccCCCCh
Q 025383           54 DEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHT---CVQKEDNYPG  130 (253)
Q Consensus        54 ~e~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~t---g~s~~~n~p~  130 (253)
                      .++++++....++-+.+.++.|.-+.-..+..++.+.+.+.....+.-......-.+.+..+.++|+   |.....|.+.
T Consensus        13 ~~~~~~~~~l~~f~~~~~~~~~i~lwr~d~~~l~v~avvl~~g~~~~~ai~~aagp~l~~e~~~~~~c~tG~ak~t~~~~   92 (200)
T KOG2633|consen   13 AEIFSNITSLEVFKIDKPDNGGISLWRGDGKTLEVDAVVLLGGKGVDEAIHRAAGPELPLECAYLHGCRTGAAKSTGGYG   92 (200)
T ss_pred             hhhhccccccchhhccCccccCeeEeecccccccceeeeeccCcchhHHHHHhcCCcchHHHHhhcCCCCCeeEecCCCC
Confidence            5667778888888889999999999888899888755543333333333333334556666666666   5555567777


Q ss_pred             HHHHHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCChhhHHhccCCCCCCCC--hhHHhh
Q 025383          131 FTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIP--EFVQNH  208 (253)
Q Consensus       131 ~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~l~eL~~~I~~dqL~iP--~~V~~~  208 (253)
                      +...+-++...|..+.+++...|.+|+.......++.-  ..+++....||. .......++....-.++.|  .++..+
T Consensus        93 Lpak~vIHtvgP~~~~d~~~~~~~L~~~~rs~L~la~~--~~ls~iAf~~I~-sg~~gyP~e~aa~~~l~ti~~~f~~~~  169 (200)
T KOG2633|consen   93 LPAKRVIHTVGPRWKEDKLQECYFLHSCYRSCLDLAIE--KLLSSIAFPKIS-SGRVGYPWEDAAKIELETIRVFFVKNK  169 (200)
T ss_pred             CceeEEEEecCchhhccchHHHHHHHHHHHHHHHHHHH--hccceeeeeeee-ccccCccHHHHHHHHHHHHHHHHhhCC
Confidence            88888888889999999999999889888777655422  456767778888 7777888888888888888  788889


Q ss_pred             hhhhcCCCCCCCCCCCCCCCCCCC
Q 025383          209 DNVLEHRPLTDYGIEPDHLHLPEV  232 (253)
Q Consensus       209 D~~l~~~~l~~~g~~~~~~~~~~~  232 (253)
                      |..|...++++|+.|.+..-+..+
T Consensus       170 d~~l~~~~f~~~d~e~~~~~l~~~  193 (200)
T KOG2633|consen  170 DSSLKTVPFLDYDSESYGAYLPEY  193 (200)
T ss_pred             CceEEEEEEeccCCchHHHHHhhh
Confidence            988899999999999887755443

>KOG1826 consensus Ras GTPase activating protein RasGAP/neurofibromin [Defense mechanisms]

Probab=94.72  E-value=0.015  Score=63.72  Aligned_cols=159  Identities=14%  Similarity=-0.012  Sum_probs=118.4

Q ss_pred             CCCCcchhhhhhcCCeEeeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcCCccccCCCCh
Q 025383           51 LSPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPG  130 (253)
Q Consensus        51 is~~e~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~tg~s~~~n~p~  130 (253)
                      +.+.|.|.-+++..++|..| .+.|.|+.++++++.--+..+-+.++.++..++ ++...-++.++-+.+.... +++--
T Consensus      1549 lheKe~fitL~~~i~~~~~G-sen~~k~~~lvs~r~fl~~~s~~il~~l~~L~~-kp~~hf~~evreD~T~~~~-d~sfl 1625 (2724)
T KOG1826|consen 1549 LHEKEEFITLAKVIQFYANG-SENGLKNFYLVSRRKFLKECSDDILIFLVELCL-KPKVHFPGEVREDPTPIEF-DYSFL 1625 (2724)
T ss_pred             HhhhhHHHHHHHHHHHHHhh-hhccCcchhhHhHHHHHhhcCcHHHHHHHHHHc-CccccCcceeeecCCcCCc-cHHHH
Confidence            45677888888888889999 999999999999955444455555555566666 5777888888887664332 33333


Q ss_pred             HHHHHH-HHHHchHHHHhccceEEEEcCChHHHHHHHhhccccc-cccccCeEEEeCChhhHHhccCCCCCCCChhHHhh
Q 025383          131 FTILRW-IYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFL-SGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNH  208 (253)
Q Consensus       131 ~~~l~~-~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFi-s~k~~~KI~fV~~l~eL~~~I~~dqL~iP~~V~~~  208 (253)
                      -+++.. ++...+.-..+|-.+++.++.+.|+|.... +.--.+ .-|--++..|.+..-.|.++|+..|...|-..+-.
T Consensus      1626 tsf~~~~~f~vr~~va~e~~~a~~di~~n~~lK~~~~-l~driL~~L~~~k~~~f~e~P~kl~e~id~~~q~~~~~t~~~ 1704 (2724)
T KOG1826|consen 1626 TSFLYLKWFKVRPHVANENKHAVGDINCNSFLKETTK-LHDRILGQLGQPKMEFFNEIPIKLREHIDDYPQLYEFMTRHA 1704 (2724)
T ss_pred             HHHHhhhheeechhhhhhcccccccccchHHHHHHHH-HHHHHHhhcCCCceeehhcCCHHHHHHHhhhhhhhhHHHHHH
Confidence            344444 777788888999999999999999998773 433222 22334677888899999999999999999988888


Q ss_pred             hhhhc
Q 025383          209 DNVLE  213 (253)
Q Consensus       209 D~~l~  213 (253)
                      ++++.
T Consensus      1705 ~edlk 1709 (2724)
T KOG1826|consen 1705 FEDLK 1709 (2724)
T ss_pred             Hhhcc
Confidence            88775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	2e-40
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	1e-34

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Length = 256

 Score =  123 bits (311), Expect = 1e-34
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 2/155 (1%)

Query: 55  EDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFC 114
           E+F  L +L  F   G+ K+GN IF  V + F    + G+ L  ++           P+ 
Sbjct: 2   EEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLL-TLKPYYAKPYE 60

Query: 115 IVYMHTCVQKEDNYPGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLS 174
           IV   T      N      L   +   P    + +  +Y  +   W R       R    
Sbjct: 61  IVVDLTHTGP-SNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTG 119

Query: 175 GGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHD 209
                ++ ++     L   I+  + ++P      +
Sbjct: 120 LKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALE 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	100.0
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	99.96
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	99.89
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	99.88
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	99.87
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	99.86
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	99.86

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*

Probab=100.00  E-value=1e-36  Score=271.57  Aligned_cols=158  Identities=19%  Similarity=0.250  Sum_probs=150.4

Q ss_pred             CcchhhhhhcCCeEeeccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhCCCCCEEEEEEcCCccccCCCChHHH
Q 025383           54 DEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPDGPFCIVYMHTCVQKEDNYPGFTI  133 (253)
Q Consensus        54 ~e~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~~~~f~iVy~~tg~s~~~n~p~~~~  133 (253)
                      .|||+++++++++|++|.|++||||+|+++|++|....|+|.++.|++.+++ .+.+++|++||+|||++ ..|.|+++|
T Consensus         1 ~ed~~~i~~~~ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~-~~~~~~y~lV~d~T~~~-~~n~p~~~w   78 (256)
T 3pg7_A            1 KEEFKALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLK-PYYAKPYEIVVDLTHTG-PSNRFKTDF   78 (256)
T ss_dssp             CTTTTTHHHHTSEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHT-TTTTSCEEEEEECTTCC-GGGCCCHHH
T ss_pred             CcchhHHHHcCCEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHH-HhcCCCeEEEEECCCCC-cccCCcHHH
Confidence            4899999999999999999999999999999999988999999999999997 88899999999999997 589999999


Q ss_pred             HHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCChhhHHhccCCCCCCCChhHHhhhhhhc
Q 025383          134 LRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSRLQYLWNDIKKGEIEIPEFVQNHDNVLE  213 (253)
Q Consensus       134 l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~l~eL~~~I~~dqL~iP~~V~~~D~~l~  213 (253)
                      ++++|+.+|++|+|||+++|||||++|+|.++|.+.++|.+.|+.+|++|++++++|.++|+++||.||+.+.++|+++.
T Consensus        79 l~~~~~llp~~~~kNlk~~Yivnpt~~~k~~~~~~~~~~~~~k~~~Ki~fv~sl~eL~~~i~~~~L~LP~~t~~~~~d~r  158 (256)
T 3pg7_A           79 LSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYHERLLTGLKGSKRLVFIDCPGKLAEHIEHEQQKLPAATLALEEDLK  158 (256)
T ss_dssp             HHHTTTSSCHHHHHTEEEEEEESCCHHHHHHHHHTHHHHTTTTTCTTEEEESSTTGGGGTSCGGGCCCCHHHHHTTSSCE
T ss_pred             HHHHHHHcCHHHHhcccEEEEECCCHHHHHHHHHHhccccccccCCcEEEECCHHHHHhhcCHHHcCCChHHHhhcccce
Confidence            99999999999999999999999999999877777889999999999999999999999999999999999999998753

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=99.89  E-value=7.2e-24  Score=186.42  Aligned_cols=174  Identities=13%  Similarity=0.101  Sum_probs=141.6

Q ss_pred             EEEeeccCCCcccccccccchhHhHHHhhhhhhhcccCC---CCcchhhhhhcCCe-EeeccCCCCCeEEEEEeecCCCC
Q 025383           14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYLS---PDEDFSDLDSLQFF-CLQGSDKSGNRIFRLVGKYFPAP   89 (253)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~is---~~e~~~~l~~~~ii-y~~G~Dk~GRPVvvi~~~~~p~~   89 (253)
                      +||||++++++|.+|+.+|         .+||+.++.+.   ....+.++.+.|.. +..|+|++||||+++..+++..+
T Consensus        39 FLra~k~dv~~A~~~l~~~---------l~wR~~~~~i~~~~~~~~~~~~~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~  109 (262)
T 1r5l_A           39 FLRARDFDLDLAWRLLKNY---------YKWRAECPEISADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPK  109 (262)
T ss_dssp             HHHHTTTCHHHHHHHHHHH---------HHHHHHCHHHHSCCCGGGTHHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTT
T ss_pred             HHHhCCCCHHHHHHHHHHH---------HHHHHhChHhhhcCChHHHHHHHHcCCccCCCCcCCCCCEEEEEeccccCcc
Confidence            5899999999999999877         78887664211   12224445567764 55799999999999999988776


Q ss_pred             CCCHHHHHHHHHHHhhhhCCC-----CCEEEEEEcCCccccCCC--ChHHHHHHHHHHchHHHHhccceEEEEcCChHHH
Q 025383           90 VVGGERLKKYIFHKICSELPD-----GPFCIVYMHTCVQKEDNY--PGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSR  162 (253)
Q Consensus        90 ~~d~e~ll~yvi~~Ld~~~~~-----~~f~iVy~~tg~s~~~n~--p~~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k  162 (253)
                      ..+.+.++++++..+|..+.+     +.+++|++.+|++. .|.  +..+.++.+...++.+||++|+++||||+++++.
T Consensus       110 ~~~~~~~~r~~~~~~E~~~~~~~~~~~g~~~I~D~~g~s~-~~~~~~~~~~~k~~~~~~q~~yPerl~~i~ivN~P~~f~  188 (262)
T 1r5l_A          110 VFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQF-SHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFH  188 (262)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCH-HHHHHCCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGH
T ss_pred             cCCHHHHHHHHHHHHHHHHhChhhcccceEEEEECCCCCH-HHHhccCHHHHHHHHHHHHhhCChhhceEEEEeCCHHHH
Confidence            678888999988888744432     34899999999974 443  3578999999999999999999999999999998


Q ss_pred             HHHHhhccccccccccCeEEEeCC--hhhHHhccCCCCC
Q 025383          163 LAFATVGRFFLSGGLYWKIKYVSR--LQYLWNDIKKGEI  199 (253)
Q Consensus       163 ~~~~~l~kpFis~k~~~KI~fV~~--l~eL~~~I~~dqL  199 (253)
                      +++ ++++||+++++++||+++.+  .++|.++|+ ++|
T Consensus       189 ~~~-~~vkpfl~~~t~~Ki~~~~~~~~~~L~~~i~-~~L  225 (262)
T 1r5l_A          189 AVF-SMIKPFLTEKIKERIHMHGNNYKQSLLQHFP-DIL  225 (262)
T ss_dssp             HHH-HHHGGGSCHHHHTTEEECCSSCHHHHHHHST-TTS
T ss_pred             HHH-HHHHHhcCHHHHhheEEeCCCcHHHHHHHhh-hhC
Confidence            854 79999999999999999954  689999998 876

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=99.88  E-value=8.5e-24  Score=192.75  Aligned_cols=175  Identities=14%  Similarity=0.144  Sum_probs=145.2

Q ss_pred             EEEeeccCCCcccccccccchhHhHHHhhhhhhhcccC-C--CCcchhhhhhcCCe-EeeccCCCCCeEEEEEeecCCCC
Q 025383           14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQYL-S--PDEDFSDLDSLQFF-CLQGSDKSGNRIFRLVGKYFPAP   89 (253)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~i-s--~~e~~~~l~~~~ii-y~~G~Dk~GRPVvvi~~~~~p~~   89 (253)
                      +||||++++++|.+|+.+|         .+||..++.+ .  ..+++.++.+.|++ +..|+|++||||+++.++++..+
T Consensus        98 FLRarkfdv~kA~~~L~~~---------l~wR~~~~~~~~~~~~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~  168 (316)
T 3hx3_A           98 FIRARKFNVGRAYELLRGY---------VNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQ  168 (316)
T ss_dssp             HHHHTTTCHHHHHHHHHHH---------HHHHHHCGGGTTTCCHHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTT
T ss_pred             HHHHcCCCHHHHHHHHHHH---------HHHHHhCchhhcCCCHHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCC
Confidence            6899999999999999888         8899877521 1  12334455567774 55799999999999999988777


Q ss_pred             CCCHHHHHHHHHHHhhhhCCC-----CCEEEEEEcCCccccCCC--ChHHHHHHHHHHchHHHHhccceEEEEcCChHHH
Q 025383           90 VVGGERLKKYIFHKICSELPD-----GPFCIVYMHTCVQKEDNY--PGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSR  162 (253)
Q Consensus        90 ~~d~e~ll~yvi~~Ld~~~~~-----~~f~iVy~~tg~s~~~n~--p~~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k  162 (253)
                      ..+.++++++++..+|..+..     +.+++|+|.+|++. .+.  .+.+.++++..+++.+||++|+++||||+++++.
T Consensus       169 ~~~~~~~~r~~~~~lE~~l~~~~~~v~g~v~IiD~~g~sl-~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~  247 (316)
T 3hx3_A          169 EITFDEILQAYCFILEKLLENEETQINGFCIIENFKGFTM-QQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFT  247 (316)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCH-HHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcccCCcceEEEEEECCCCCH-HHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHH
Confidence            788999999999999855532     36899999999974 332  3467899999999999999999999999999998


Q ss_pred             HHHHhhccccccccccCeEEEe-CChhhHHhccCCCCC
Q 025383          163 LAFATVGRFFLSGGLYWKIKYV-SRLQYLWNDIKKGEI  199 (253)
Q Consensus       163 ~~~~~l~kpFis~k~~~KI~fV-~~l~eL~~~I~~dqL  199 (253)
                      +++ ++++||+++++++||+++ +++++|.++|++++|
T Consensus       248 ~i~-~ivkpfl~~kt~~KI~~~~~~~~~L~~~I~~~~L  284 (316)
T 3hx3_A          248 TTY-NVVKPFLKSKLLERVFVHGDDLSGFYQEIDENIL  284 (316)
T ss_dssp             HHH-HHHGGGCCHHHHTTEEEEETCCHHHHHHSCGGGS
T ss_pred             HHH-HHHHHhCCHHhhhheEEeCCCHHHHHhhCCHhhC
Confidence            855 799999999999999999 578999999999876

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=99.87  E-value=1.5e-23  Score=188.45  Aligned_cols=175  Identities=14%  Similarity=0.080  Sum_probs=137.8

Q ss_pred             EEEeeccCCCcccccccccchhHhHHHhhhhhhhcc--cCCCCc---chhhhhhcCCeEeeccCCCCCeEEEEEeecCCC
Q 025383           14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQ--YLSPDE---DFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPA   88 (253)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~is~~e---~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~   88 (253)
                      +||||++++++|.+|+.+|         .+||+.+.  .+-...   ....+.+....+..|+|++||||+++..+++..
T Consensus        58 FLrarkfdv~~A~~~l~~~---------l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~  128 (296)
T 1aua_A           58 FLRARKFDVQLAKEMFENC---------EKWRKDYGTDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNL  128 (296)
T ss_dssp             HHHHTTTCHHHHHHHHHHH---------HHHHHHHTGGGHHHHCCCTTHHHHGGGSCCEEEEECTTSCEEEEECGGGCCH
T ss_pred             HHHHcCCCHHHHHHHHHHH---------HHHHHHcCcchhhhccccCcHHHHHHhCCceecccCCCCCEEEEEeeccCCh
Confidence            5899999999999999877         78887662  111111   122344444457789999999999999887753


Q ss_pred             ----CCCCHHHHHHHHHHHhhhhC-------------CCCCEEEEEEcCCccccCCCCh-HHHHHHHHHHchHHHHhccc
Q 025383           89 ----PVVGGERLKKYIFHKICSEL-------------PDGPFCIVYMHTCVQKEDNYPG-FTILRWIYEELPSRIKNRLQ  150 (253)
Q Consensus        89 ----~~~d~e~ll~yvi~~Ld~~~-------------~~~~f~iVy~~tg~s~~~n~p~-~~~l~~~y~~l~~~ykknLk  150 (253)
                          +..+.++++++++..+|..+             ..+.+++|++.+|++. .+.+. .++++.+..+++.+||++|+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~g~s~-~~~~~~~~~~k~~~~~~q~~YPerl~  207 (296)
T 1aua_A          129 HEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISI-SSAYSVMSYVREASYISQNYYPERMG  207 (296)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCH-HHHHHHHHHHHHHHHHHHHHSTTCEE
T ss_pred             HHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECCCCCH-HHHHHHHHHHHHHHHHHHHhHHHhhC
Confidence                23578888888887775321             2456899999999975 45544 57889999999999999999


Q ss_pred             eEEEEcCChHHHHHHHhhccccccccccCeEEEeCC--hhhHHhccCCCCC
Q 025383          151 IMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSR--LQYLWNDIKKGEI  199 (253)
Q Consensus       151 ~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~--l~eL~~~I~~dqL  199 (253)
                      ++||||+++++.++ |++++||+++++++||+++.+  .++|.++|++++|
T Consensus       208 ~i~iiN~P~~f~~~-~~iikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~L  257 (296)
T 1aua_A          208 KFYIINAPFGFSTA-FRLFKPFLDPVTVSKIFILGSSYQKELLKQIPAENL  257 (296)
T ss_dssp             EEEEESCCHHHHHH-HHHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSSS
T ss_pred             eEEEECchHHHHHH-HHHHHhhcCHhhcceEEEeCcccHHHHHhhCCHhhC
Confidence            99999999999985 479999999999999999965  6789999999864

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=99.86  E-value=1.4e-22  Score=189.72  Aligned_cols=175  Identities=11%  Similarity=0.073  Sum_probs=139.8

Q ss_pred             EEEeeccCCCcccccccccchhHhHHHhhhhhhhcc--cCCCCcchhhhhhcCCeEeeccCCCCCeEEEEEeecCCCC--
Q 025383           14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQ--YLSPDEDFSDLDSLQFFCLQGSDKSGNRIFRLVGKYFPAP--   89 (253)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~is~~e~~~~l~~~~iiy~~G~Dk~GRPVvvi~~~~~p~~--   89 (253)
                      +||||++++++|.+|+.+|         .+||+.+.  .+-.......+.+....++.|+|++||||+++..+++..+  
T Consensus        41 FLrarkfdv~~A~~~l~~~---------l~wR~~~~~~~i~~~~~~~~~~~~~~~~~~g~Dk~GrpV~~~~~g~~d~~~l  111 (403)
T 1olm_A           41 WLRARSFDLQKSEAMLRKH---------VEFRKQKDIDNIISWQPPEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGL  111 (403)
T ss_dssp             HHHHTTTCHHHHHHHHHHH---------HHHHHHTTGGGGGGSCCCHHHHHHCCBEEEEECTTSCEEEEEECTTCCHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHH---------HHHHHHcCCCcccccCCHHHHHHhCCceeeccCCCcCEEEEEecCCCChHHh
Confidence            5899999999999999877         89998653  1211111223333333456899999999999999987643  


Q ss_pred             --CCCHHHHHHHHHHHhhhhC------------CCCCEEEEEEcCCccccCCC--ChHHHHHHHHHHchHHHHhccceEE
Q 025383           90 --VVGGERLKKYIFHKICSEL------------PDGPFCIVYMHTCVQKEDNY--PGFTILRWIYEELPSRIKNRLQIMY  153 (253)
Q Consensus        90 --~~d~e~ll~yvi~~Ld~~~------------~~~~f~iVy~~tg~s~~~n~--p~~~~l~~~y~~l~~~ykknLk~vY  153 (253)
                        ..+.++++++++..+|..+            ..+.+++|+|.+|++. .+.  |.+.+++++..+++.+||++|+++|
T Consensus       112 ~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g~sl-~~~~~~~~~~~k~~~~~lq~~YPerl~~i~  190 (403)
T 1olm_A          112 LFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGL-KHLWKPAVEAYGEFLCMFEENYPETLKRLF  190 (403)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCG-GGGCHHHHHHHHHHHHHHHHHSTTCEEEEE
T ss_pred             hccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCCCCH-HHHhhHHHHHHHHHHHHHHhhCcHhhCeEE
Confidence              4688999999988887322            2467999999999985 343  4678999999999999999999999


Q ss_pred             EEcCChHHHHHHHhhccccccccccCeEEEeCC--hhhHHhccCCCCC
Q 025383          154 FIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSR--LQYLWNDIKKGEI  199 (253)
Q Consensus       154 iVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~--l~eL~~~I~~dqL  199 (253)
                      |||+++++.++ |++++||+++++++||+++.+  .++|.++|++++|
T Consensus       191 iiN~P~~f~~i-~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~I~~~~L  237 (403)
T 1olm_A          191 VVKAPKLFPVA-YNLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQV  237 (403)
T ss_dssp             EESCCTTHHHH-HHHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGS
T ss_pred             EEeCCHHHHHH-HHHHHhhcCHhhhceEEEEChhHHHHHHhhcChhhC
Confidence            99999999884 479999999999999999964  5789999999865

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=99.86  E-value=3.7e-23  Score=189.10  Aligned_cols=175  Identities=13%  Similarity=0.085  Sum_probs=138.1

Q ss_pred             EEEeeccCCCcccccccccchhHhHHHhhhhhhhcc--cCCCCc---------chhhhhhcCCeEeeccCCCCCeEEEEE
Q 025383           14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQ--YLSPDE---------DFSDLDSLQFFCLQGSDKSGNRIFRLV   82 (253)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~--~is~~e---------~~~~l~~~~iiy~~G~Dk~GRPVvvi~   82 (253)
                      +||||++++++|.+|+.+|         .+||+.+.  .+-..-         ....+.+....+..|+|++||||+++.
T Consensus        67 FLRArkfdv~kA~~mL~~~---------l~WRk~~~vd~i~~~~~~~~~~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r  137 (320)
T 3q8g_A           67 FLRARKFDINASVEMFVET---------ERWREEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAE  137 (320)
T ss_dssp             HHHHTTTCHHHHHHHHHHH---------HHHHHHHTGGGHHHHHHHTHHHHHHHHHHHHTTSCEEEEEECTTCCEEEEEE
T ss_pred             HHHHcCCCHHHHHHHHHHH---------HHHHHHcCccccccccccccccchhHHHHHHHhCCceecCCCCCcCEEEEEe
Confidence            5899999999999999877         78987664  111111         112345566678899999999999999


Q ss_pred             eecCCCCC----CCHHHHHHHHHHHhhhhC-------------CCCCEEEEEEcCCccccCCCCh-HHHHHHHHHHchHH
Q 025383           83 GKYFPAPV----VGGERLKKYIFHKICSEL-------------PDGPFCIVYMHTCVQKEDNYPG-FTILRWIYEELPSR  144 (253)
Q Consensus        83 ~~~~p~~~----~d~e~ll~yvi~~Ld~~~-------------~~~~f~iVy~~tg~s~~~n~p~-~~~l~~~y~~l~~~  144 (253)
                      .+.+..+.    .+.++++++++..+|..+             ..+..++|++.+|++. .+.+. .++++++..+++.+
T Consensus       138 ~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~~IiD~~g~sl-~~~~~~~~~~k~~~~~lq~~  216 (320)
T 3q8g_A          138 LGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISL-SNAYHVLSYIKDVADISQNY  216 (320)
T ss_dssp             CTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCH-HHHHHTHHHHHHHHHHHHHH
T ss_pred             ccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeEEEEECCCCCH-HHHHHHHHHHHHHHHHHHhh
Confidence            98776432    367788888777665321             2466789999999984 44433 67889999999999


Q ss_pred             HHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeCC--hhhHHhccCCCCC
Q 025383          145 IKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVSR--LQYLWNDIKKGEI  199 (253)
Q Consensus       145 ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~~--l~eL~~~I~~dqL  199 (253)
                      ||++|+++||||+++++++ +|++++||+++++++||+++.+  .++|.++|++++|
T Consensus       217 YPerl~~i~iiN~P~~f~~-~~~~ikpfl~~~t~~KI~~~~~~~~~~L~~~i~~~~L  272 (320)
T 3q8g_A          217 YPERMGKFYIIHSPFGFST-MFKMVKPFLDPVTVSKIFILGSSYKKELLKQIPIENL  272 (320)
T ss_dssp             STTCEEEEEEESCCTTHHH-HHTTTGGGSCHHHHHTEEECCTTHHHHHHHHSCGGGS
T ss_pred             CchhhceEEEECCCHHHHH-HHHHHHHhCCHHHhhhEEEeCCCcHHHHHhhCChhhC
Confidence            9999999999999999988 5589999999999999999965  6899999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	99.75
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	99.75
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	99.73
d1olma1	75	Supernatant protein factor (SPF), N-terminal domai	84.02

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=1.5e-18  Score=145.67  Aligned_cols=135  Identities=16%  Similarity=0.098  Sum_probs=111.4

Q ss_pred             CeEeeccCCCCCeEEEEEeecCCC----CCCCHHHHHHHHHHHhhhhC-------------CCCCEEEEEEcCCccccCC
Q 025383           65 FFCLQGSDKSGNRIFRLVGKYFPA----PVVGGERLKKYIFHKICSEL-------------PDGPFCIVYMHTCVQKEDN  127 (253)
Q Consensus        65 iiy~~G~Dk~GRPVvvi~~~~~p~----~~~d~e~ll~yvi~~Ld~~~-------------~~~~f~iVy~~tg~s~~~n  127 (253)
                      ..+.+|+|++||||+++...++..    +..+.++++++++..+|..+             ..+.+++|+|.+|++. .+
T Consensus        12 p~~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g~s~-~~   90 (203)
T d1auaa2          12 PQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISI-SS   90 (203)
T ss_dssp             CCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTCCH-HH
T ss_pred             CCcCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEECCCCCh-HH
Confidence            347789999999999999987763    24578888888887776322             1356899999999874 33


Q ss_pred             C-ChHHHHHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeC--ChhhHHhccCCCCCCCCh
Q 025383          128 Y-PGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVS--RLQYLWNDIKKGEIEIPE  203 (253)
Q Consensus       128 ~-p~~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~--~l~eL~~~I~~dqL~iP~  203 (253)
                      . +.+..++++.++++.+|+++|+++||||+++++++++ ++++||+++++++||++++  +.++|.++|+.++  ||.
T Consensus        91 ~~~~~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~-~~vk~fl~~~t~~KI~~~~~~~~~~L~~~id~~~--LP~  166 (203)
T d1auaa2          91 AYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAF-RLFKPFLDPVTVSKIFILGSSYQKELLKQIPAEN--LPV  166 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHH-HHHGGGSCHHHHTTEEECCSCCHHHHTTTSCSSS--SBG
T ss_pred             hhhHHHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHH-HHHHhhcCHHHhhceeecCCCCHHHHHhhCCHhh--ChH
Confidence            3 3357889999999999999999999999999999855 6889999999999999994  4889999999986  555

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.7e-18  Score=143.51  Aligned_cols=139  Identities=9%  Similarity=0.028  Sum_probs=116.6

Q ss_pred             hhhhcCCeEe-eccCCCCCeEEEEEeecCCCCCCCHHHHHHHHHHHhhhhCCC-----CCEEEEEEcCCccccCC--CCh
Q 025383           59 DLDSLQFFCL-QGSDKSGNRIFRLVGKYFPAPVVGGERLKKYIFHKICSELPD-----GPFCIVYMHTCVQKEDN--YPG  130 (253)
Q Consensus        59 ~l~~~~iiy~-~G~Dk~GRPVvvi~~~~~p~~~~d~e~ll~yvi~~Ld~~~~~-----~~f~iVy~~tg~s~~~n--~p~  130 (253)
                      ++-+.|.+.. .|+|++||||+++.++++.++..+.++++++++..+|..+.+     +.+++|+|.+|++. .+  .++
T Consensus         4 ~~l~~g~~~~lp~rD~~Gr~v~~~r~~~~d~~~~~~~~~~r~~~~~~e~~~~~~~~~~~g~~~I~D~~g~s~-~~~~~~~   82 (185)
T d1r5la2           4 GLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEVETQRNGIKAIFDLEGWQF-SHAFQIT   82 (185)
T ss_dssp             HHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTSHHHHHHCEEEEEECTTCCH-HHHHHCC
T ss_pred             HHHHcCCceecCCCCcCcCEEEEEEcccCCCCCCCHHHHHHHHHHHHHHHHhccccCCceEEEEEECCCCCH-HHhhhcc
Confidence            4556777665 699999999999999988766688889999888888633321     34789999999974 33  356


Q ss_pred             HHHHHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEe-CChhhHHhccCCCCC
Q 025383          131 FTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYV-SRLQYLWNDIKKGEI  199 (253)
Q Consensus       131 ~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV-~~l~eL~~~I~~dqL  199 (253)
                      ++.++++.+.++.+||.||+++||||+++++++++ ++++||+++|+++||+++ ++.+++..++++++|
T Consensus        83 ~~~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~-~~vk~fl~~k~~~Ki~~~~~~~~~~~~~~~~~~L  151 (185)
T d1r5la2          83 PSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVF-SMIKPFLTEKIKERIHMHGNNYKQSLLQHFPDIL  151 (185)
T ss_dssp             HHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHH-HHHGGGSCHHHHTTEEECCSSCHHHHHHHSTTTS
T ss_pred             HHHHHHHHHHHHhhCchhhheeEEEcCCHHHHHHH-HHHHHhccHHHHhheEEeccchHHHHhhcCHHhC
Confidence            89999999999999999999999999999999855 799999999999999999 567888888888865

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3e-18  Score=143.94  Aligned_cols=131  Identities=14%  Similarity=0.123  Sum_probs=107.9

Q ss_pred             EeeccCCCCCeEEEEEeecCCCC----CCCHHHHHHHHHHHhhhhC------------CCCCEEEEEEcCCccccCCC--
Q 025383           67 CLQGSDKSGNRIFRLVGKYFPAP----VVGGERLKKYIFHKICSEL------------PDGPFCIVYMHTCVQKEDNY--  128 (253)
Q Consensus        67 y~~G~Dk~GRPVvvi~~~~~p~~----~~d~e~ll~yvi~~Ld~~~------------~~~~f~iVy~~tg~s~~~n~--  128 (253)
                      ..+|+|++||||+++...++..+    ....++++++.+..+|..+            ..+.+++|+|.+|++. .+.  
T Consensus        12 ~~~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~s~-~~~~~   90 (199)
T d1olma3          12 GMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGL-KHLWK   90 (199)
T ss_dssp             EEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCG-GGGCH
T ss_pred             ccccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCCCch-hhhcc
Confidence            45799999999999999887642    3567888888887776221            1256899999999874 343  


Q ss_pred             ChHHHHHHHHHHchHHHHhccceEEEEcCChHHHHHHHhhccccccccccCeEEEeC--ChhhHHhccCCCCC
Q 025383          129 PGFTILRWIYEELPSRIKNRLQIMYFIHPGLWSRLAFATVGRFFLSGGLYWKIKYVS--RLQYLWNDIKKGEI  199 (253)
Q Consensus       129 p~~~~l~~~y~~l~~~ykknLk~vYiVHP~~~~k~~~~~l~kpFis~k~~~KI~fV~--~l~eL~~~I~~dqL  199 (253)
                      +.+++++++.++++.+||++|+++||||+++++++++ ++++||+++++++||++++  ..+.|.++|+.++|
T Consensus        91 ~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w-~ivk~fl~~~t~~KI~~~~~~~~~~L~~~i~~~~l  162 (199)
T d1olma3          91 PAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAY-NLIKPFLSEDTRKKIMVLGANWKEVLLKHISPDQV  162 (199)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHH-HHHGGGSCHHHHHTEEECCTTHHHHHTTTSCGGGS
T ss_pred             ccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHH-HHHHHhcCHHhhccEEEeCCCCHHHHHHhCCHhhC
Confidence            3578999999999999999999999999999999855 7889999999999999994  35789999988754

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.02  E-value=0.015  Score=39.58  Aligned_cols=27  Identities=4%  Similarity=0.155  Sum_probs=24.1

Q ss_pred             EEEeeccCCCcccccccccchhHhHHHhhhhhhhcc
Q 025383           14 MVLASDLGIDARPFLSKQQDTEIEEQEQEQWHDCAQ   49 (253)
Q Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~   49 (253)
                      +||||++++++|-+|+.+|         .+||+-+.
T Consensus        41 FLrAr~fdv~kA~~ml~~~---------l~WR~~~~   67 (75)
T d1olma1          41 WLRARSFDLQKSEAMLRKH---------VEFRKQKD   67 (75)
T ss_dssp             HHHHTTTCHHHHHHHHHHH---------HHHHHHTT
T ss_pred             HHHHCCCCHHHHHHHHHHH---------HHHHHHcC
Confidence            5899999999999999888         89998764