Citrus Sinensis ID: 025389

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MALAGDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLRRLD
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHccHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
malagdltLDLVRDSLIRQEDTIIFCLIErakhplnapaydqsyasfpgfsGSLLQYIVQQSEAMQAtagryenpeespffpdklphsfvppfkypqvlhpagtsinknKIIWDMYFNQLLPLfvaegddgnyastaTSDLACLQALSRRIHYGKFVAevkfrdapheYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQevslgndgdkqarfkvdpsvvsrlygdwimpfTKLVQVEYLLRRLD
Flexible Loop (DISEMBL)
malagdltldlvrdsliRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQevslgndgdkqarfkVDPSVVSrlygdwimpftkLVQVEYLLRRLD
Low Complexity Region (SEG)
MALAGDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLRRLD
Disordered region (IsUnstruct)
*****DLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQ************************LPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVS********ARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLR***
Disordered Region (DISOPRED)
****GDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEV************KVDPSVVSRLYGDWIMPFTKLVQVEYLLRRLD
Disordered Region (DISEMBL)
MALAGDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLRRLD
Disordered Region (DISPRO)
*****DLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLRRLD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALAGDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLRRLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
P42738	340	Chorismate mutase, chloro	no	no	0.976	0.726	0.552	1e-78
P32178	256	Chorismate mutase OS=Sacc	yes	no	0.956	0.945	0.398	1e-46
O13739	251	Probable chorismate mutas	yes	no	0.968	0.976	0.392	3e-42

>sp|P42738|CHMU_ARATH Chorismate mutase, chloroplastic OS=Arabidopsis thaliana GN=CM1 PE=2 SV=3

 Score =  293 bits (749), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 141/255 (55%), Positives = 182/255 (71%), Gaps = 8/255 (3%)

Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQ 66
           LTL+ +R+SLIRQED+IIF L+ERAK+  NA  YD +     GF+GSL++Y+V+ +E + 
Sbjct: 86  LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDPTAFDMDGFNGSLVEYMVKGTEKLH 145

Query: 67  ATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVA 126
           A  GR+++P+E PFFPD LP   +PP +YP+VLH A  SIN NK IW+MYF  L+P  V 
Sbjct: 146 AKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRLVK 205

Query: 127 EGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLT 186
           +GDDGNY STA  D  CLQ LS+RIHYGKFVAE KF+ +P  YE AI+A+D+DALM++LT
Sbjct: 206 KGDDGNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLT 265

Query: 187 YENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQAR--------FKVDPSVVSRLYGDWIMP 238
           +  VE  +KKRVE K    GQEV +G +  ++          +K+ P +V  LYGDWIMP
Sbjct: 266 FPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMP 325

Query: 239 FTKLVQVEYLLRRLD 253
            TK VQVEYLLRRLD
Sbjct: 326 LTKEVQVEYLLRRLD 340

Arabidopsis thaliana (taxid: 3702)
EC: 5EC: .EC: 4EC: .EC: 9EC: 9EC: .EC: 5

>sp|P32178|CHMU_YEAST Chorismate mutase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ARO7 PE=1 SV=1

 Score =  186 bits (473), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 100/251 (39%), Positives = 150/251 (59%), Gaps = 9/251 (3%)

Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASF--PGFSGSLLQYIVQQSEA 64
           L L  +RD L+R ED+IIF  IER+        Y+ ++     P F GS L + +   E 
Sbjct: 10  LNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEI 69

Query: 65  MQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLF 124
             +   R+E+P+E+PFFPDK+  SF+P   YPQ+L P    +N N  I  +Y  +++PL 
Sbjct: 70  AHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLI 129

Query: 125 VA-EGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALM 182
              +GDD  N+ S AT D+ CLQ+LSRRIH+GKFVAE KF+     Y   I++KD + +M
Sbjct: 130 SKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIM 189

Query: 183 NLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKL 242
             +T   VE+ + +R+ KKA V G  V   N+  ++   ++ P  + ++Y + ++P TK 
Sbjct: 190 KNITNSAVEEKILERLTKKAEVYG--VDPTNESGER---RITPEYLVKIYKEIVIPITKE 244

Query: 243 VQVEYLLRRLD 253
           V+VEYLLRRL+
Sbjct: 245 VEVEYLLRRLE 255

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 5

>sp|O13739|CHMU_SCHPO Probable chorismate mutase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC16E8.04c PE=3 SV=1

 Score =  172 bits (435), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 101/257 (39%), Positives = 149/257 (57%), Gaps = 12/257 (4%)

Query: 1   MALAGD-LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYD---QSYASFPGFSGSLLQ 56
           M+L  + L L+ +R +LIRQEDTIIF  +ERA+ P N   Y    +   +   + GS L 
Sbjct: 1   MSLVNEKLKLENIRSALIRQEDTIIFNFLERAQFPRNEKVYKSGKEGCLNLENYDGSFLN 60

Query: 57  YIVQQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMY 116
           Y++ + E + A   RY +PEE PF  D LP   +P F     LHP   ++N N  I + Y
Sbjct: 61  YLLHEEEKVYALVRRYASPEEYPF-TDNLPEPILPKFSGKFPLHP--NNVNVNSEILEYY 117

Query: 117 FNQLLPLFVAEGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRA 175
            N+++P   + GDD  NY ST   D+ CLQ+LSRRIHYGKFVAE K+   P +Y+  I A
Sbjct: 118 INEIVPKISSPGDDFDNYGSTVVCDIRCLQSLSRRIHYGKFVAEAKYLANPEKYKKLILA 177

Query: 176 KDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDW 235
           +D   + N +     E+ V KR+  KA+  G++ +   D  K +  +++   V+ +Y D+
Sbjct: 178 RDIKGIENEIVDAAQEERVLKRLHYKALNYGRDAA---DPTKPSD-RINADCVASIYKDY 233

Query: 236 IMPFTKLVQVEYLLRRL 252
           ++P TK V+V+YLL RL
Sbjct: 234 VIPMTKKVEVDYLLARL 250

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 5

EC: .

EC: 4

EC: .

EC: 9

EC: 9

EC: .

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
255548746	253	chorismate mutase cm2, putative [Ricinus	0.996	0.996	0.677	2e-98
224141963	255	chorismate mutase [Populus trichocarpa]	0.984	0.976	0.68	4e-96
449455521	260	PREDICTED: chorismate mutase, chloroplas	0.972	0.946	0.663	2e-93
297811197	265	predicted protein [Arabidopsis lyrata su	0.976	0.932	0.658	1e-91
15238285	265	chorismate mutase 2 [Arabidopsis thalian	0.976	0.932	0.642	4e-90
359475878	248	PREDICTED: chorismate mutase, chloroplas	0.976	0.995	0.661	5e-90
147852219	248	hypothetical protein VITISV_036494 [Viti	0.976	0.995	0.661	1e-89
222136857	248	chorismate mutase 01 [Vitis vinifera]	0.976	0.995	0.657	1e-89
388507522	258	unknown [Lotus japonicus]	0.972	0.953	0.621	5e-89
357437123	273	Chorismate mutase [Medicago truncatula]	1.0	0.926	0.598	1e-88

>gi|255548746|ref|XP_002515429.1| chorismate mutase cm2, putative [Ricinus communis] gi|223545373|gb|EEF46878.1| chorismate mutase cm2, putative [Ricinus communis]

 Score =  364 bits (935), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 172/254 (67%), Positives = 209/254 (82%), Gaps = 2/254 (0%)

Query: 1   MALAGD-LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIV 59
           MA +G    LDLVR SL RQEDTI+FCLIER++ P N+P Y Q+    PGFSGSL+ +IV
Sbjct: 1   MADSGTAFNLDLVRQSLERQEDTIVFCLIERSRFPSNSPLYSQNLDLVPGFSGSLVHFIV 60

Query: 60  QQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQ 119
           +++EA+Q+ A RYENPEE+PFFPD LPHS VP  KYP+ LHP   S++ NK IWDMYFN+
Sbjct: 61  KETEAIQSKARRYENPEENPFFPDDLPHSVVPSHKYPKFLHPPAASVDVNKQIWDMYFNK 120

Query: 120 LLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRD 179
           LLPLFV +GDDGNYASTA +DL CLQALSRRIHYGKFVAEVKFR+AP EYE AIR++DRD
Sbjct: 121 LLPLFVTKGDDGNYASTAANDLNCLQALSRRIHYGKFVAEVKFREAPQEYEPAIRSQDRD 180

Query: 180 ALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPF 239
           ALMN+LT++NVE+ VKKRV KKA V GQ+VS GN+   + ++KVDPS++S LY +W+MP 
Sbjct: 181 ALMNMLTFKNVEETVKKRVAKKATVFGQDVSHGNNTSAE-KYKVDPSILSHLYDEWVMPL 239

Query: 240 TKLVQVEYLLRRLD 253
           TKLV+VEYLLRRLD
Sbjct: 240 TKLVEVEYLLRRLD 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224141963|ref|XP_002324330.1| chorismate mutase [Populus trichocarpa] gi|222865764|gb|EEF02895.1| chorismate mutase [Populus trichocarpa]

 Score =  357 bits (915), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 170/250 (68%), Positives = 200/250 (80%), Gaps = 1/250 (0%)

Query: 4   AGDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSE 63
             + TLD +R SLIRQEDTI+FCL+ERA+ P+N+  Y+QS    PGFSG L+ +IVQ++E
Sbjct: 7   GSEFTLDSIRKSLIRQEDTIVFCLMERARFPMNSALYNQSLDWVPGFSGPLVDFIVQETE 66

Query: 64  AMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPL 123
           A+QA AGRY NPEE+PFFPD LP S VP + Y QVLH  G SIN NK IWDMY NQLLPL
Sbjct: 67  AVQAKAGRYVNPEENPFFPDNLPPSLVPNYNYSQVLHSGGASININKAIWDMYLNQLLPL 126

Query: 124 FVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMN 183
           FV  GDDGNYASTA SDL+CLQALSRRIHYGKFVAE+KFRDAP +YE  IRAKD D LM 
Sbjct: 127 FVVAGDDGNYASTAASDLSCLQALSRRIHYGKFVAEIKFRDAPQDYEPPIRAKDADELMK 186

Query: 184 LLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLV 243
           LLT E VE+MVKKRVEKKA+V GQ+VS G++      +KVDPSVV+RLY +W++P TK V
Sbjct: 187 LLTDERVEKMVKKRVEKKAIVFGQDVS-GSNNAVSKHYKVDPSVVARLYDEWVIPLTKRV 245

Query: 244 QVEYLLRRLD 253
           +VEYL+RRLD
Sbjct: 246 EVEYLIRRLD 255

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455521|ref|XP_004145501.1| PREDICTED: chorismate mutase, chloroplastic-like [Cucumis sativus] gi|449522327|ref|XP_004168178.1| PREDICTED: chorismate mutase, chloroplastic-like [Cucumis sativus]

 Score =  347 bits (891), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 164/247 (66%), Positives = 201/247 (81%), Gaps = 1/247 (0%)

Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQ 66
           LTLD +RDSLIRQED+I+F LIERA+ PLN   Y  ++AS PGFSGSL+++IV+++E +Q
Sbjct: 15  LTLDGIRDSLIRQEDSIVFSLIERARFPLNGKMYLHNHASIPGFSGSLVEFIVRETEDVQ 74

Query: 67  ATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVA 126
           A AGRYENPEE+PFFP+ LP   V P KYP+VLHP+G SIN NK IWD YF + LPL V+
Sbjct: 75  AKAGRYENPEENPFFPENLPRPLVHPHKYPKVLHPSGASINMNKAIWDFYFKEFLPLLVS 134

Query: 127 EGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLT 186
           +GDDGNYA+TA SDLACLQALSRRIH GK+VAEVKFRDAP+EYE  IR+++RD LM LLT
Sbjct: 135 DGDDGNYAATAASDLACLQALSRRIHCGKYVAEVKFRDAPNEYEGPIRSQERDTLMELLT 194

Query: 187 YENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVE 246
           ++ VE+ VKKRVEKKAMV GQEV+L N+     + K+DPS+ S LY  W+MP TK V+VE
Sbjct: 195 FKAVEEQVKKRVEKKAMVFGQEVTL-NNTSGGGKHKIDPSLASLLYDKWVMPLTKEVEVE 253

Query: 247 YLLRRLD 253
           YLLRRL+
Sbjct: 254 YLLRRLE 260

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811197|ref|XP_002873482.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297319319|gb|EFH49741.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  342 bits (876), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 164/249 (65%), Positives = 199/249 (79%), Gaps = 2/249 (0%)

Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQ 66
           L+LD +R+SLIRQEDTI+F LIERAK PLNAPA+++S     G S SL ++ V++ E +Q
Sbjct: 17  LSLDSIRESLIRQEDTIVFSLIERAKFPLNAPAFEESRCLDSGNSSSLTEFFVREIETIQ 76

Query: 67  ATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVA 126
           A  GRYENPEE+PFF + +PH+  P  KYP  LHP   S+N NK IWD+YF +LLPLFV 
Sbjct: 77  AKVGRYENPEENPFFLENIPHAVFPTHKYPPALHPKALSVNINKHIWDIYFKELLPLFVK 136

Query: 127 EGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLT 186
            GDDGNY STA SDLACLQALSRRIHYGKFVAEVKFRDAP +YE AIRA+DR+ALM LLT
Sbjct: 137 PGDDGNYPSTAASDLACLQALSRRIHYGKFVAEVKFRDAPQDYERAIRAQDREALMKLLT 196

Query: 187 YENVEQMVKKRVEKKAMVLGQEVSLGND-GDK-QARFKVDPSVVSRLYGDWIMPFTKLVQ 244
           +E VE+MVKKRV+KKA   GQEV    D GD+ + ++KVDP +VSR+YG+W++P TKLV+
Sbjct: 197 FEKVEEMVKKRVQKKAETFGQEVKCITDSGDESKKKYKVDPLLVSRIYGEWLIPLTKLVE 256

Query: 245 VEYLLRRLD 253
           VEYLLRRLD
Sbjct: 257 VEYLLRRLD 265

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238285|ref|NP_196648.1| chorismate mutase 2 [Arabidopsis thaliana] gi|5732016|gb|AAD48922.1|L47355_1 chorimate mutase [Arabidopsis thaliana] gi|5824345|emb|CAB54519.1| chorismate mutase [Arabidopsis thaliana] gi|8979721|emb|CAB96842.1| chorismate mutase CM2 [Arabidopsis thaliana] gi|17529008|gb|AAL38714.1| putative chorismate mutase CM2 [Arabidopsis thaliana] gi|22136860|gb|AAM91774.1| putative chorismate mutase CM2 [Arabidopsis thaliana] gi|332004221|gb|AED91604.1| chorismate mutase 2 [Arabidopsis thaliana]

 Score =  337 bits (863), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 160/249 (64%), Positives = 196/249 (78%), Gaps = 2/249 (0%)

Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQ 66
           L+LDL+R+SLIRQEDTI+F LIERAK PLN+PA+++S     G   SL ++ V+++E +Q
Sbjct: 17  LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFEESRCLDSGSFSSLTEFFVRETEIIQ 76

Query: 67  ATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVA 126
           A  GRYE PEE+PFF + +PHS  P  KYP  LHP   S+N NK IWD+YF +LLPLFV 
Sbjct: 77  AKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQIWDIYFKELLPLFVK 136

Query: 127 EGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLT 186
            GDDGNY STA SDLACLQALSRRIHYGKFVAEVKFRDAP +YE AIRA+DR+ALM LLT
Sbjct: 137 PGDDGNYPSTAASDLACLQALSRRIHYGKFVAEVKFRDAPQDYEPAIRAQDREALMKLLT 196

Query: 187 YENVEQMVKKRVEKKAMVLGQEVSL--GNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQ 244
           +E VE+MVKKRV+KKA   GQEV    G   + + ++KVDP + SR+YG+W++P TKLV+
Sbjct: 197 FEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVDPLLASRIYGEWLIPLTKLVE 256

Query: 245 VEYLLRRLD 253
           VEYLLRRLD
Sbjct: 257 VEYLLRRLD 265

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475878|ref|XP_002283293.2| PREDICTED: chorismate mutase, chloroplastic-like [Vitis vinifera] gi|296082131|emb|CBI21136.3| unnamed protein product [Vitis vinifera]

 Score =  336 bits (861), Expect = 5e-90,   Method: Compositional matrix adjust.
 Identities = 164/248 (66%), Positives = 191/248 (77%), Gaps = 1/248 (0%)

Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGS-LLQYIVQQSEAM 65
           + L+ VRDSLIRQEDTI+F LIERAK P+N+ AY         FS S  L   V++SEA+
Sbjct: 1   MDLESVRDSLIRQEDTIVFSLIERAKFPINSWAYSPPQNGVDAFSASSFLHSFVRESEAL 60

Query: 66  QATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFV 125
            A AGRYENPEE+PFFPD LP S VP   Y QVLHPAG+SIN NK IWD+Y N+LLPLF 
Sbjct: 61  HAKAGRYENPEENPFFPDDLPPSMVPTHDYKQVLHPAGSSINVNKTIWDIYLNKLLPLFA 120

Query: 126 AEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLL 185
           AEGDDGNY  TA  DLACLQA+SRRIHYGKFVAEVKF+++P EY  AI  +DR  LM +L
Sbjct: 121 AEGDDGNYGLTAACDLACLQAISRRIHYGKFVAEVKFKESPEEYGPAIHDQDRAGLMKML 180

Query: 186 TYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQV 245
           T+E VE+MVKKRVEKKA V GQEV+L ++   +  +KVDPSVVSRLY +W+MP TK VQV
Sbjct: 181 TFEAVEEMVKKRVEKKATVFGQEVNLSDNSKSKETYKVDPSVVSRLYEEWVMPLTKQVQV 240

Query: 246 EYLLRRLD 253
           EYLLRRLD
Sbjct: 241 EYLLRRLD 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147852219|emb|CAN82251.1| hypothetical protein VITISV_036494 [Vitis vinifera]

 Score =  335 bits (859), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 164/248 (66%), Positives = 190/248 (76%), Gaps = 1/248 (0%)

Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGS-LLQYIVQQSEAM 65
           + L+ VRDSLIRQEDTI+F LIERAK P+N+ AY         FS S  L   V++SEA+
Sbjct: 1   MDLESVRDSLIRQEDTIVFSLIERAKFPINSWAYSPPQNGVDAFSASSFLHSFVRESEAL 60

Query: 66  QATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFV 125
            A AGRYENPEE+PFFPD LP S VP   Y QVLHPAG+SIN NK IWD+Y N+LLPLF 
Sbjct: 61  HAKAGRYENPEENPFFPDDLPPSMVPTHDYKQVLHPAGSSINVNKTIWDIYLNKLLPLFA 120

Query: 126 AEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLL 185
           AEGDDGNY  TA  DLACLQA+SRRIHYGKFVAEVKF+++P EY  AI  +DR  LM +L
Sbjct: 121 AEGDDGNYGLTAACDLACLQAISRRIHYGKFVAEVKFKESPEEYGPAIHDQDRAGLMKML 180

Query: 186 TYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQV 245
           T+E VE+MVKKRVEKKA V GQEV+L +    +  +KVDPSVVSRLY +W+MP TK VQV
Sbjct: 181 TFEAVEEMVKKRVEKKATVFGQEVNLSDXSKSKETYKVDPSVVSRLYEEWVMPLTKQVQV 240

Query: 246 EYLLRRLD 253
           EYLLRRLD
Sbjct: 241 EYLLRRLD 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222136857|gb|ACM45078.1| chorismate mutase 01 [Vitis vinifera]

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 163/248 (65%), Positives = 190/248 (76%), Gaps = 1/248 (0%)

Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGS-LLQYIVQQSEAM 65
           + L+ VRDSLIRQEDTI+F LIERAK P+N+ AY         FS S  L   V++SE +
Sbjct: 1   MDLESVRDSLIRQEDTIVFSLIERAKFPINSWAYSPPQNGVDAFSASSFLHSFVRESETL 60

Query: 66  QATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFV 125
            A AGRYENPEE+PFFPD LP S VP   Y QVLHPAG+SIN NK IWD+Y N+LLPLF 
Sbjct: 61  HAKAGRYENPEENPFFPDDLPPSMVPTHDYKQVLHPAGSSINVNKTIWDIYLNKLLPLFA 120

Query: 126 AEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLL 185
           AEGDDGNY  TA  DLACLQA+SRRIHYGKFVAEVKF+++P EY  AI  +DR  LM +L
Sbjct: 121 AEGDDGNYGLTAACDLACLQAISRRIHYGKFVAEVKFKESPEEYGPAIHDQDRAGLMKML 180

Query: 186 TYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQV 245
           T+E VE+MVKKRVEKKA V GQEV+L ++   +  +KVDPSVVSRLY +W+MP TK VQV
Sbjct: 181 TFEAVEEMVKKRVEKKATVFGQEVNLSDNSKSKETYKVDPSVVSRLYEEWVMPLTKQVQV 240

Query: 246 EYLLRRLD 253
           EYLLRRLD
Sbjct: 241 EYLLRRLD 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507522|gb|AFK41827.1| unknown [Lotus japonicus]

 Score =  333 bits (853), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 153/246 (62%), Positives = 194/246 (78%)

Query: 8   TLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQA 67
           TL+ VR  L+RQEDTI++ LI+RA+ PLN+  Y+++Y+  PGF GSL++++VQ +EA+QA
Sbjct: 13  TLESVRKGLVRQEDTIVYGLIDRARFPLNSHTYEENYSKIPGFCGSLVEFVVQNTEAVQA 72

Query: 68  TAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAE 127
            AGRY+NPEE+ FFP+  P S VP + + Q+LHP   SIN NK IW  YF++LLP+ VA 
Sbjct: 73  KAGRYQNPEENAFFPEHFPLSIVPSYPFTQILHPGAASININKSIWKKYFDELLPILVAS 132

Query: 128 GDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTY 187
           G DGNYA TA SDL+ LQA+SRRIHYGKFVAEVKFR++P +YE  IRAKDR+ LM LLT+
Sbjct: 133 GGDGNYAQTAASDLSLLQAISRRIHYGKFVAEVKFRESPQDYEPLIRAKDREGLMKLLTF 192

Query: 188 ENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEY 247
           E+VE+MV+KRVEKKAMV GQ+V L  D +K+ + K DPSV SR Y  WI+P TK VQVEY
Sbjct: 193 ESVEEMVRKRVEKKAMVFGQDVGLNGDDEKKVKRKFDPSVASRSYQKWIIPLTKEVQVEY 252

Query: 248 LLRRLD 253
           LLRRLD
Sbjct: 253 LLRRLD 258

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357437123|ref|XP_003588837.1| Chorismate mutase [Medicago truncatula] gi|355477885|gb|AES59088.1| Chorismate mutase [Medicago truncatula]

 Score =  332 bits (850), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 152/254 (59%), Positives = 197/254 (77%), Gaps = 1/254 (0%)

Query: 1   MALA-GDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIV 59
           MA A  + TLD VR++L+RQEDTI+F LIER+K P N+  YDQ+Y   PGF GSL++++ 
Sbjct: 20  MATAENEYTLDTVRETLVRQEDTIVFGLIERSKFPFNSQTYDQNYLQIPGFCGSLVEFVF 79

Query: 60  QQSEAMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQ 119
             +E +QA AGRY+NPEE+PFFP+ L  S VP + + + LHP   SIN NK +W MYF+ 
Sbjct: 80  TNTEIVQAKAGRYKNPEENPFFPENLSLSLVPSYPFTKFLHPGAASININKSLWKMYFHD 139

Query: 120 LLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRD 179
           LLPLFVA GDDGNYA TA SDL+ LQA+S+R+HYGKFVAEVKFR++P +YE  IR+KD++
Sbjct: 140 LLPLFVASGDDGNYAQTAASDLSLLQAISKRVHYGKFVAEVKFRESPQDYEPLIRSKDKE 199

Query: 180 ALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPF 239
            LM LLT+++VE+MVKKRVEKKA + GQ++SL +  D + + K DPSV S+LY  W++P 
Sbjct: 200 GLMKLLTFKSVEEMVKKRVEKKATLFGQDISLNSSDDSKGKQKFDPSVASKLYEKWVIPL 259

Query: 240 TKLVQVEYLLRRLD 253
           TK VQVEYLLRRLD
Sbjct: 260 TKEVQVEYLLRRLD 273

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2183755	265	CM2 "chorismate mutase 2" [Ara	0.976	0.932	0.646	2.1e-84
TAIR|locus:2094832	340	CM1 "chorismate mutase 1" [Ara	0.976	0.726	0.556	2e-72
TAIR|locus:2007146	316	CM3 "chorismate mutase 3" [Ara	0.972	0.778	0.546	1.1e-69
SGD|S000006264	256	ARO7 "Chorismate mutase" [Sacc	0.948	0.937	0.407	3.4e-45
CGD|CAL0002091	268	ARO7 [Candida albicans (taxid:	0.972	0.917	0.400	1.2e-44
POMBASE|SPAC16E8.04c	251	SPAC16E8.04c "chorismate mutas	0.960	0.968	0.397	2.5e-42
ASPGD|ASPL0000007551	267	aroC [Emericella nidulans (tax	0.940	0.891	0.397	2.8e-41

TAIR|locus:2183755 CM2 "chorismate mutase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 845 (302.5 bits), Expect = 2.1e-84, P = 2.1e-84
 Identities = 161/249 (64%), Positives = 198/249 (79%)

Query:     7 LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQ 66
             L+LDL+R+SLIRQEDTI+F LIERAK PLN+PA+++S     G   SL ++ V+++E +Q
Sbjct:    17 LSLDLIRESLIRQEDTIVFSLIERAKFPLNSPAFEESRCLDSGSFSSLTEFFVRETEIIQ 76

Query:    67 ATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVA 126
             A  GRYE PEE+PFF + +PHS  P  KYP  LHP   S+N NK IWD+YF +LLPLFV 
Sbjct:    77 AKVGRYEYPEENPFFLENIPHSVFPTHKYPSALHPKALSVNINKQIWDIYFKELLPLFVK 136

Query:   127 EGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLT 186
              GDDGNY STA SDLACLQALSRRIHYGKFVAEVKFRDAP +YE AIRA+DR+ALM LLT
Sbjct:   137 PGDDGNYPSTAASDLACLQALSRRIHYGKFVAEVKFRDAPQDYEPAIRAQDREALMKLLT 196

Query:   187 YENVEQMVKKRVEKKAMVLGQEVSLGND-GDK-QARFKVDPSVVSRLYGDWIMPFTKLVQ 244
             +E VE+MVKKRV+KKA   GQEV   +  GD+ + ++KVDP + SR+YG+W++P TKLV+
Sbjct:   197 FEKVEEMVKKRVQKKAETFGQEVKFNSGYGDESKKKYKVDPLLASRIYGEWLIPLTKLVE 256

Query:   245 VEYLLRRLD 253
             VEYLLRRLD
Sbjct:   257 VEYLLRRLD 265

GO:0004106 "chorismate mutase activity" evidence=IEA;IGI

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0046417 "chorismate metabolic process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

TAIR|locus:2094832 CM1 "chorismate mutase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
 Identities = 142/255 (55%), Positives = 183/255 (71%)

Query:     7 LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQ 66
             LTL+ +R+SLIRQED+IIF L+ERAK+  NA  YD +     GF+GSL++Y+V+ +E + 
Sbjct:    86 LTLEGIRNSLIRQEDSIIFGLLERAKYCYNADTYDPTAFDMDGFNGSLVEYMVKGTEKLH 145

Query:    67 ATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVA 126
             A  GR+++P+E PFFPD LP   +PP +YP+VLH A  SIN NK IW+MYF  L+P  V 
Sbjct:   146 AKVGRFKSPDEHPFFPDDLPEPMLPPLQYPKVLHFAADSININKKIWNMYFRDLVPRLVK 205

Query:   127 EGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLT 186
             +GDDGNY STA  D  CLQ LS+RIHYGKFVAE KF+ +P  YE AI+A+D+DALM++LT
Sbjct:   206 KGDDGNYGSTAVCDAICLQCLSKRIHYGKFVAEAKFQASPEAYESAIKAQDKDALMDMLT 265

Query:   187 YENVEQMVKKRVEKKAMVLGQEVSLG--------NDGDKQARFKVDPSVVSRLYGDWIMP 238
             +  VE  +KKRVE K    GQEV +G         +G++   +K+ P +V  LYGDWIMP
Sbjct:   266 FPTVEDAIKKRVEMKTRTYGQEVKVGMEEKEEEEEEGNESHVYKISPILVGDLYGDWIMP 325

Query:   239 FTKLVQVEYLLRRLD 253
              TK VQVEYLLRRLD
Sbjct:   326 LTKEVQVEYLLRRLD 340

GO:0004106 "chorismate mutase activity" evidence=IEA;IGI

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0046417 "chorismate metabolic process" evidence=IEA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0009536 "plastid" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0016688 "L-ascorbate peroxidase activity" evidence=ISS

TAIR|locus:2007146 CM3 "chorismate mutase 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 706 (253.6 bits), Expect = 1.1e-69, P = 1.1e-69
 Identities = 136/249 (54%), Positives = 180/249 (72%)

Query:     7 LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQ 66
             L L+ +R SLIRQED+IIF L+ERA++  NA  YD+   +  GF GSL++++V+++E + 
Sbjct:    69 LKLESIRHSLIRQEDSIIFNLLERAQYRYNADTYDEDAFTMEGFQGSLVEFMVRETEKLH 128

Query:    67 ATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVA 126
             A   RY++P+E PFFP  LP   +PP +YPQVLH    SIN NK +W+MYF  LLP  V 
Sbjct:   129 AKVDRYKSPDEHPFFPQCLPEPILPPIQYPQVLHRCAESININKKVWNMYFKHLLPRLVK 188

Query:   127 EGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLT 186
              GDDGN  S A  D  CLQ LS+RIH+GKFVAE KFR+ P  YE AI+ +DR  LM LLT
Sbjct:   189 PGDDGNCGSAALCDTMCLQILSKRIHFGKFVAEAKFRENPAAYETAIKEQDRTQLMQLLT 248

Query:   187 YENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQA--RFKVDPSVVSRLYGDWIMPFTKLVQ 244
             YE VE++VKKRVE KA + GQ++++ ND + +A   +K+ PS+V++LYG+ IMP TK VQ
Sbjct:   249 YETVEEVVKKRVEIKARIFGQDITI-NDPETEADPSYKIQPSLVAKLYGERIMPLTKEVQ 307

Query:   245 VEYLLRRLD 253
             +EYLLRRLD
Sbjct:   308 IEYLLRRLD 316

GO:0004106 "chorismate mutase activity" evidence=IEA;IGI

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=ISM

GO:0046417 "chorismate metabolic process" evidence=IEA

GO:0000162 "tryptophan biosynthetic process" evidence=IDA

GO:0009536 "plastid" evidence=TAS

GO:0042742 "defense response to bacterium" evidence=IEP

SGD|S000006264 ARO7 "Chorismate mutase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 103/253 (40%), Positives = 155/253 (61%)

Query:     7 LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPA-YDQSYASF--PGFSGSLLQYIVQQSE 63
             L L  +RD L+R ED+IIF  IER+ H    P+ Y+ ++     P F GS L + +   E
Sbjct:    10 LNLQNIRDELVRMEDSIIFKFIERS-HFATCPSVYEANHPGLEIPNFKGSFLDWALSNLE 68

Query:    64 AMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPL 123
                +   R+E+P+E+PFFPDK+  SF+P   YPQ+L P    +N N  I  +Y  +++PL
Sbjct:    69 IAHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPL 128

Query:   124 FVA-EGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFR-DAPHEYELAIRAKDRDA 180
                 +GDD  N+ S AT D+ CLQ+LSRRIH+GKFVAE KF+ D P  Y   I++KD + 
Sbjct:   129 ISKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPL-YTKLIKSKDVEG 187

Query:   181 LMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFT 240
             +M  +T   VE+ + +R+ KKA V G + +    G++    ++ P  + ++Y + ++P T
Sbjct:   188 IMKNITNSAVEEKILERLTKKAEVYGVDPT-NESGER----RITPEYLVKIYKEIVIPIT 242

Query:   241 KLVQVEYLLRRLD 253
             K V+VEYLLRRL+
Sbjct:   243 KEVEVEYLLRRLE 255

GO:0009094 "L-phenylalanine biosynthetic process" evidence=IC;IMP

GO:0006571 "tyrosine biosynthetic process" evidence=IC;IMP

GO:0004106 "chorismate mutase activity" evidence=IEA;IDA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IEA

GO:0046417 "chorismate metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008652 "cellular amino acid biosynthetic process" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

CGD|CAL0002091 ARO7 [Candida albicans (taxid:5476)]

 Score = 470 (170.5 bits), Expect = 1.2e-44, P = 1.2e-44
 Identities = 101/252 (40%), Positives = 152/252 (60%)

Query:     6 DLTLDL--VRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSE 63
             +  LDL  +R +L+R EDTI+F LIER++   +   Y+++  + P F G+ L++ + Q E
Sbjct:     7 ETVLDLANIRQALVRMEDTIVFDLIERSQFFSSPSVYEKNKYNIPNFDGTFLEWALLQLE 66

Query:    64 AMQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLP- 122
                +   RYE P+E+PFFPD+L    +PP  YP++L      IN N  I   Y ++++P 
Sbjct:    67 VAHSQIRRYEAPDETPFFPDQLKTPILPPINYPKILAKYSDEINVNSEIMKFYVDEIVPQ 126

Query:   123 LFVAEGDDG-NYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDAL 181
             +   +GD   N  S +T D+ CLQA+SRRIH+GKFVAE K++     Y   I  KD   +
Sbjct:   127 VSCGQGDQKENLGSASTCDIECLQAISRRIHFGKFVAEAKYQSDKPLYIKLILDKDVKGI 186

Query:   182 MNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTK 241
              N +T   VEQ + +R+  KA   G + SL    + Q+  KV P V+++LY DWI+P TK
Sbjct:   187 ENSITNSAVEQKILERLIVKAESYGVDPSLKFGQNVQS--KVKPEVIAKLYKDWIIPLTK 244

Query:   242 LVQVEYLLRRLD 253
              V+++YLLRRL+
Sbjct:   245 KVEIDYLLRRLE 256

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0046417 "chorismate metabolic process" evidence=IEA

GO:0004106 "chorismate mutase activity" evidence=IEA

POMBASE|SPAC16E8.04c SPAC16E8.04c "chorismate mutase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 103/259 (39%), Positives = 152/259 (58%)

Query:     1 MALAGD-LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYD---QSYASFPGFSGSLLQ 56
             M+L  + L L+ +R +LIRQEDTIIF  +ERA+ P N   Y    +   +   + GS L 
Sbjct:     1 MSLVNEKLKLENIRSALIRQEDTIIFNFLERAQFPRNEKVYKSGKEGCLNLENYDGSFLN 60

Query:    57 YIVQQSEAMQATAGRYENPEESPFFPDKLPHSFVPPF--KYPQVLHPAGTSINKNKIIWD 114
             Y++ + E + A   RY +PEE PF  D LP   +P F  K+P  LHP   ++N N  I +
Sbjct:    61 YLLHEEEKVYALVRRYASPEEYPF-TDNLPEPILPKFSGKFP--LHP--NNVNVNSEILE 115

Query:   115 MYFNQLLPLFVAEGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAI 173
              Y N+++P   + GDD  NY ST   D+ CLQ+LSRRIHYGKFVAE K+   P +Y+  I
Sbjct:   116 YYINEIVPKISSPGDDFDNYGSTVVCDIRCLQSLSRRIHYGKFVAEAKYLANPEKYKKLI 175

Query:   174 RAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYG 233
              A+D   + N +     E+ V KR+  KA+  G++ +   D  K +  +++   V+ +Y 
Sbjct:   176 LARDIKGIENEIVDAAQEERVLKRLHYKALNYGRDAA---DPTKPSD-RINADCVASIYK 231

Query:   234 DWIMPFTKLVQVEYLLRRL 252
             D+++P TK V+V+YLL RL
Sbjct:   232 DYVIPMTKKVEVDYLLARL 250

GO:0000162 "tryptophan biosynthetic process" evidence=ISS

GO:0004106 "chorismate mutase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006571 "tyrosine biosynthetic process" evidence=ISS

GO:0009094 "L-phenylalanine biosynthetic process" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0046417 "chorismate metabolic process" evidence=IEA

ASPGD|ASPL0000007551 aroC [Emericella nidulans (taxid:162425)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 101/254 (39%), Positives = 144/254 (56%)

Query:     9 LDL--VRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQ 66
             LDL  +R  LIR EDTI F LIER + PLN   Y       P    SL+ Y+++++E +Q
Sbjct:    14 LDLANIRFQLIRLEDTITFHLIERVQFPLNKTIYIPGGVKIPNEQISLMDYLLRETERLQ 73

Query:    67 ATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPL--- 123
             +   RY++P+E PFFP  L    + P  YP++LH     +N N+ I   Y   +LP    
Sbjct:    74 SRVRRYQSPDEYPFFPSALEKPILQPLDYPKILHD--NDVNVNETIKTRYVQDILPAICP 131

Query:   124 -FVAEGDDG----NYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDR 178
              F    D G    NY S AT D++CLQALSRRIH+GKFVAE KF+    ++   I+A DR
Sbjct:   132 QFGGREDRGETQENYGSAATCDVSCLQALSRRIHFGKFVAESKFQKETEKFVALIKAGDR 191

Query:   179 DALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMP 238
               +   +T   VEQ V +R+  KA   G +        +Q+  K+D   V  +Y ++++P
Sbjct:   192 KEIDEAITDAKVEQKVLERLALKAKTYGTDPGF----PEQSGPKIDVQAVQDMYKEYVIP 247

Query:   239 FTKLVQVEYLLRRL 252
              TK+V+VEYL++RL
Sbjct:   248 LTKVVEVEYLMQRL 261


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.137   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      253       253   0.00083  114 3  11 22  0.43    33
                                                     32  0.47    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  7
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  186 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  22.18u 0.09s 22.27t   Elapsed:  00:00:03
  Total cpu time:  22.18u 0.09s 22.27t   Elapsed:  00:00:03
  Start:  Fri May 10 07:11:30 2013   End:  Fri May 10 07:11:33 2013

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=IMP;RCA

GO:0000909 "sporocarp development involved in sexual reproduction" evidence=IMP

GO:0004106 "chorismate mutase activity" evidence=IDA;RCA

GO:0046417 "chorismate metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O13739	CHMU_SCHPO	5, ., 4, ., 9, 9, ., 5	0.3929	0.9683	0.9760	yes	no
P32178	CHMU_YEAST	5, ., 4, ., 9, 9, ., 5	0.3984	0.9565	0.9453	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	5.4.99.5	0.914
3rd Layer	5.4.99	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	CM2	chorismate mutase (EC-5.4.99.5) (255 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	CS1	chorismate synthase (EC-4.2.3.5) (438 aa)						•	•		0.949
	CS2	RecName- Full=Chorismate synthase; EC=4.2.3.5; (437 aa)						•	•		0.949
	ASA1	anthranilate synthase, alpha subunit 1 (EC-4.1.3.27) (532 aa)						•			0.899
	ASB2	anthranilate synthase, beta subunit, ASB2 (EC-4.1.3.27) (240 aa)						•			0.899
	ASA2	anthranilate synthase, alpha subunit 2 (EC-4.1.3.27) (530 aa)						•			0.899
	ASB1	anthranilate synthase, beta subunit, ASB1 (EC-4.1.3.27) (276 aa)						•			0.899
	ICS	isochorismate synthase (EC-5.4.4.2) (497 aa)						•			0.800
	AMT7	aminotransferase family protein (EC-2.6.1.5) (407 aa)						•			0.800
	PABAS	p-aminobenzoate synthase (928 aa)						•			0.800
	AMT3	aminotransferase family protein (289 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
PLN02344	284	PLN02344, PLN02344, chorismate mutase	1e-164
TIGR01802	246	TIGR01802, CM_pl-yst, monofunctional chorismate mu	1e-102
pfam01817	79	pfam01817, CM_2, Chorismate mutase type II	5e-04

>gnl|CDD|177978 PLN02344, PLN02344, chorismate mutase

 Score =  454 bits (1169), Expect = e-164
 Identities = 166/248 (66%), Positives = 197/248 (79%), Gaps = 1/248 (0%)

Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQ 66
           L+LD +R SLIRQEDTIIF LIERA+ P NAP YD +    PGF GSL++++V+++EA+ 
Sbjct: 37  LSLDSIRSSLIRQEDTIIFSLIERAQFPYNAPTYDPNAFGVPGFHGSLVEFMVRETEALH 96

Query: 67  ATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVA 126
           A  GRY++P+E PFFP+ LP   +PP +YPQVLHPA  SIN NK IWDMYFN LLPL V 
Sbjct: 97  AKVGRYKSPDEHPFFPEDLPEPVLPPLQYPQVLHPAADSININKAIWDMYFNDLLPLLVK 156

Query: 127 EGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLT 186
           EGDDGNY STA  DLACLQALS+RIHYGKFVAE KFR++P EYE AIRA+D D LM LLT
Sbjct: 157 EGDDGNYGSTAVCDLACLQALSKRIHYGKFVAEAKFRESPEEYEPAIRAQDADGLMKLLT 216

Query: 187 YENVEQMVKKRVEKKAMVLGQEVSL-GNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQV 245
           +E VE+ VKKRVEKKA   GQEV+L G +     ++KVDPS+V+RLYG+WIMP TK VQV
Sbjct: 217 FEAVEEAVKKRVEKKARTFGQEVTLSGEEDGADPKYKVDPSLVARLYGEWIMPLTKEVQV 276

Query: 246 EYLLRRLD 253
           EYLLRRLD
Sbjct: 277 EYLLRRLD 284

Length = 284

>gnl|CDD|130861 TIGR01802, CM_pl-yst, monofunctional chorismate mutase, eukaryotic type

 Score =  298 bits (764), Expect = e-102
 Identities = 119/250 (47%), Positives = 162/250 (64%), Gaps = 7/250 (2%)

Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQS-YASFPGFSGSLLQYIVQQSEAM 65
           L L+ +R  LIRQEDTIIF LIERA+   N   Y+   +   P F GS L Y++ ++E +
Sbjct: 1   LNLENIRSQLIRQEDTIIFKLIERAQFAYNKKVYEAGAFGEIPNFDGSFLDYLLSETEKL 60

Query: 66  QATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFV 125
            A   R+E+P+E PFFPDKLP   +PP KYP++LHP   S+N N  I  +Y   ++PL  
Sbjct: 61  HARVRRFESPDEHPFFPDKLPKPILPPLKYPKILHPYAPSVNVNSKIKKVYIEDIVPLIS 120

Query: 126 AEG--DDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMN 183
             G  DDGNY STAT D+ CLQ+LSRRIH+GKFVAE KF+  P +Y   I+AKD + +M 
Sbjct: 121 KRGGDDDGNYGSTATCDIECLQSLSRRIHFGKFVAEAKFQADPEKYTKLIKAKDVEGIMK 180

Query: 184 LLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLV 243
            +T   VE+ + +R+ KKA V G + ++  +  +    K+DP  V  +Y DW++P TK V
Sbjct: 181 NITDPAVEEKILERLAKKARVYGVDPTVPEESGR----KIDPEYVVDIYKDWVIPLTKEV 236

Query: 244 QVEYLLRRLD 253
           +VEYLLRRLD
Sbjct: 237 EVEYLLRRLD 246

This model represents the plant and yeast (plastidic) chorismate mutase. These CM's are distinct from other forms by the presence of an extended regulatory domain [Amino acid biosynthesis, Aromatic amino acid family]. Length = 246

>gnl|CDD|201989 pfam01817, CM_2, Chorismate mutase type II

 Score = 37.6 bits (88), Expect = 5e-04
 Identities = 13/54 (24%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 13 RDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASF---PGFSGSLLQYIVQQSE 63
          R  + R +D I+F L ERA+       Y +        P     +L+ +++++E
Sbjct: 1  RKEIDRIDDQILFLLAERAELAREIAEYKKEQGLPIYDPEREAEVLERLLREAE 54

Chorismate mutase EC:5.4.99.5 catalyzes the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
PLN02344	284	chorismate mutase	100.0
TIGR01802	246	CM_pl-yst monofunctional chorismate mutase, eukary	100.0
KOG0795	262	consensus Chorismate mutase [Amino acid transport	100.0
COG1605	101	PheA Chorismate mutase [Amino acid transport and m	98.38
PF01817	81	CM_2: Chorismate mutase type II; InterPro: IPR0208	95.45
TIGR01803	82	CM-like chorismate mutase related enzymes. This su	94.62
PRK08055	181	chorismate mutase; Provisional	94.61
PRK09269	193	chorismate mutase; Provisional	94.53
TIGR01799	83	CM_T chorismate mutase domain of T-protein. This m	93.95
smart00830	79	CM_2 Chorismate mutase type II. Chorismate mutase,	93.89
PRK06285	96	chorismate mutase; Provisional	93.25
PRK09239	104	chorismate mutase; Provisional	93.13
TIGR01791	83	CM_archaeal chorismate mutase, archaeal type. This	92.97
TIGR01797	83	CM_P_1 chorismate mutase domain of proteobacterial	92.58
TIGR01806	114	CM_mono2 chorismate mutase, putative. This model r	92.22
TIGR01795	94	CM_mono_cladeE monofunctional chorismate mutase, a	88.58
PRK10622	386	pheA bifunctional chorismate mutase/prephenate deh	87.56
PRK07075	101	isochorismate-pyruvate lyase; Reviewed	84.99
PRK07248	87	hypothetical protein; Provisional	83.05

>PLN02344 chorismate mutase

Probab=100.00  E-value=4.7e-133  Score=908.80  Aligned_cols=252  Identities=65%  Similarity=1.106  Sum_probs=245.2

Q ss_pred             CCCCccChHHHHHHHHhhhhhhhHHHHhhhCCCCCccccCCCCCCCCCCCchHHHHHHHhHhhhhhhccccCCCCCCCCC
Q 025389            2 ALAGDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFF   81 (253)
Q Consensus         2 ~~~~~l~Ld~IR~~LiR~EDTIIF~LIERaqf~~N~~~Y~~~~~~~~~f~gS~le~~l~etE~~ha~~rRY~sPdE~PFf   81 (253)
                      ..+++|||||||++||||||||||+||||||||+|+.+|++|+++++||+|||+||||+|||++||++|||+||||||||
T Consensus        32 ~~~~~L~L~~IR~~LIR~EDTIiF~LIERaqf~~N~~~Y~~~~~~~~~f~gS~le~~l~etE~lha~vrRY~sPDE~PFF  111 (284)
T PLN02344         32 DESEVLSLDSIRSSLIRQEDTIIFSLIERAQFPYNAPTYDPNAFGVPGFHGSLVEFMVRETEALHAKVGRYKSPDEHPFF  111 (284)
T ss_pred             CccccccHHHHHHHHHHhhhHHHHHHHHHhhcccCccccCCCCcCCCCCCccHHHHHHHHHHHHHHhhcccCCCCcCCCC
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCccccCCCCCCchhHHHHHHHHHhhhcccccCCCCCCchhHHHhhHHHHHHhHhhhhhchhhhhhc
Q 025389           82 PDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVK  161 (253)
Q Consensus        82 P~~Lp~pilpp~~yp~vLhp~a~~vNiN~~I~~~Y~~~llP~~~~~gdd~nygSta~~Di~cLQALSrRIHyGKFVAEaK  161 (253)
                      |++||+|||||++||+||||+|++||||++||+|||++|||++|++||||||||||+||++|||||||||||||||||||
T Consensus       112 P~~Lp~pilpp~~yP~vLhp~a~~iNiN~~I~~~Y~~~ilP~~~~~Gdd~NyGSta~cDi~cLQALSrRIHyGKFVAEaK  191 (284)
T PLN02344        112 PEDLPEPVLPPLQYPQVLHPAADSININKAIWDMYFNDLLPLLVKEGDDGNYGSTAVCDLACLQALSKRIHYGKFVAEAK  191 (284)
T ss_pred             hhhcccccCCCCCCCcccCCCccccchhHHHHHHHHHHhchhhcCCCCccccHHHHHHHHHHHHHHHHHhhhhhhhhHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCC-CCCCCccccChHHHHHhhcccccccc
Q 025389          162 FRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGND-GDKQARFKVDPSVVSRLYGDWIMPFT  240 (253)
Q Consensus       162 F~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~-~~~~~~~Ki~p~~V~~lY~~~VIPLT  240 (253)
                      ||++|+.|++||+|||++|||++|||++||++||+||++||++|||||+.++. +.+++.+||||++|++||++||||||
T Consensus       192 F~~~p~~y~~lI~a~D~dglm~llT~~aVE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~~KI~p~~v~~lY~~~ViPLT  271 (284)
T PLN02344        192 FRESPEEYEPAIRAQDADGLMKLLTFEAVEEAVKKRVEKKARTFGQEVTLSGEEDGADPKYKVDPSLVARLYGEWIMPLT  271 (284)
T ss_pred             hhcCHHHHHHHHHhhCHHHHHHHhhhHHHHHHHHHHHHHHHHhhCCCCCCCCcccccCCCcccCHHHHHHHHHhceeeCc
Confidence            99999999999999999999999999999999999999999999999986532 23467899999999999999999999


Q ss_pred             hHHHHHHHHhhcC
Q 025389          241 KLVQVEYLLRRLD  253 (253)
Q Consensus       241 KeVEVeYLlrRLd  253 (253)
                      |+|||+|||||||
T Consensus       272 K~VeVeYLLrRLd  284 (284)
T PLN02344        272 KEVQVEYLLRRLD  284 (284)
T ss_pred             hHHHHHHHHHhcC
Confidence            9999999999997

>TIGR01802 CM_pl-yst monofunctional chorismate mutase, eukaryotic type

Probab=100.00  E-value=6e-132  Score=887.27  Aligned_cols=243  Identities=49%  Similarity=0.878  Sum_probs=237.5

Q ss_pred             cChHHHHHHHHhhhhhhhHHHHhhhCCCCCccccCCCCCC-CCCCCchHHHHHHHhHhhhhhhccccCCCCCCCCCCCCC
Q 025389            7 LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYAS-FPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFPDKL   85 (253)
Q Consensus         7 l~Ld~IR~~LiR~EDTIIF~LIERaqf~~N~~~Y~~~~~~-~~~f~gS~le~~l~etE~~ha~~rRY~sPdE~PFfP~~L   85 (253)
                      |||||||++||||||||||+||||||||+|+.+|++|+|+ ++||+|||+||||+|||++||++|||+|||||||||++|
T Consensus         1 L~L~~IR~~LiR~EDTIiF~LIERaqf~~N~~~Y~~~~~~~~~~f~gS~le~~l~etE~lha~vrRY~sPDE~PFfP~~L   80 (246)
T TIGR01802         1 LNLENIRSQLIRQEDTIIFKLIERAQFAYNKKVYEAGAFGEIPNFDGSFLDYLLSETEKLHARVRRFESPDEHPFFPDKL   80 (246)
T ss_pred             CCHHHHHHHHHHhhhHHHHHHHHHhhcccCchhcCCCCcCCCCCCcccHHHHHHHHHHHHHHHhcccCCCCcCCCChhhc
Confidence            7999999999999999999999999999999999999999 999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccccCCCCCCchhHHHHHHHHHhhhcccccCC--CCCCchhHHHhhHHHHHHhHhhhhhchhhhhhccc
Q 025389           86 PHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEG--DDGNYASTATSDLACLQALSRRIHYGKFVAEVKFR  163 (253)
Q Consensus        86 p~pilpp~~yp~vLhp~a~~vNiN~~I~~~Y~~~llP~~~~~g--dd~nygSta~~Di~cLQALSrRIHyGKFVAEaKF~  163 (253)
                      |+|||||++||+||||.|++||||++||+|||++|||++|++|  |||||||||+||++|||||||||||||||||||||
T Consensus        81 p~pilpp~~yp~vLhp~a~~iNvN~~I~~~Y~~~ilP~~~~~~g~dd~NyGSta~cDi~cLQALSrRIHyGKFVAEaKF~  160 (246)
T TIGR01802        81 PKPILPPLKYPKILHPYAPSVNVNSKIKKVYIEDIVPLISKRGGDDDGNYGSTATCDIECLQSLSRRIHFGKFVAEAKFQ  160 (246)
T ss_pred             ccccCCCCCCCcccCCCccccchhHHHHHHHHHHhchHhhcCCCCCcccchHHHHHHHHHHHHHHHHhhhhhhHhHHHHh
Confidence            9999999999999999999999999999999999999999887  88999999999999999999999999999999999


Q ss_pred             cChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCccccChHHHHHhhcccccccchHH
Q 025389          164 DAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLV  243 (253)
Q Consensus       164 ~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~Ki~p~~V~~lY~~~VIPLTKeV  243 (253)
                      ++|+.|++||+|+|++|||++|||++||++||+||++||++|||||+.++    +..+||||++|++||++|||||||+|
T Consensus       161 ~~p~~y~~lI~a~D~~glm~llT~~aVE~~Vl~Rv~~KA~~yGqd~~~~~----~~~~KI~p~~v~~lY~~~viPLTK~V  236 (246)
T TIGR01802       161 ADPEKYTKLIKAKDVEGIMKNITDPAVEEKILERLAKKARVYGVDPTVPE----ESGRKIDPEYVVDIYKDWVIPLTKEV  236 (246)
T ss_pred             hCHHHHHHHHHhhcHHHHHHHhhhHHHHHHHHHHHHHHHHhhCCCCCCCC----CCCCCcCHHHHHHHHHhceecCchHH
Confidence            99999999999999999999999999999999999999999999998642    44579999999999999999999999


Q ss_pred             HHHHHHhhcC
Q 025389          244 QVEYLLRRLD  253 (253)
Q Consensus       244 EVeYLlrRLd  253 (253)
                      ||+|||||||
T Consensus       237 eVeYLLrRLd  246 (246)
T TIGR01802       237 EVEYLLRRLD  246 (246)
T ss_pred             HHHHHHHhcC
Confidence            9999999997

This model represents the plant and yeast (plastidic) chorismate mutase. These CM's are distinct from other forms by the presence of an extended regulatory domain.

>KOG0795 consensus Chorismate mutase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.7e-126  Score=843.50  Aligned_cols=251  Identities=57%  Similarity=1.014  Sum_probs=243.9

Q ss_pred             CCCccChHHHHHHHHhhhhhhhHHHHhhhCCCCCccccCCCCCCCCCCCchHHHHHHHhHhhhhhhccccCCCCCCCCCC
Q 025389            3 LAGDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESPFFP   82 (253)
Q Consensus         3 ~~~~l~Ld~IR~~LiR~EDTIIF~LIERaqf~~N~~~Y~~~~~~~~~f~gS~le~~l~etE~~ha~~rRY~sPdE~PFfP   82 (253)
                      .|++|+|++||++||||||||||+||||||||+|+++|+++++.++||+|||+|||++|||++||+||||+|||||||||
T Consensus        11 ~s~~L~Le~IR~sLIRqEDsIIF~llERa~f~~n~~~ye~~~~~~~gf~gSl~e~~v~etEk~hakV~Ry~sPdE~PFfp   90 (262)
T KOG0795|consen   11 ESEVLKLENIRDSLIRQEDSIIFNLLERAQFPYNADVYEENAFGMEGFKGSLLEYMVRETEKLHAKVRRYESPDEHPFFP   90 (262)
T ss_pred             ccceeeHHhHHHHHHhhhhHHHHHHHHHhccCCCccccccCCCCCCCcchHHHHHHHHhHHHHHHHHhcccCCccCCCcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCccccCCCCCCchhHHHHHHHHHhhhcccccCCCCCCchhHHHhhHHHHHHhHhhhhhchhhhhhcc
Q 025389           83 DKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAEGDDGNYASTATSDLACLQALSRRIHYGKFVAEVKF  162 (253)
Q Consensus        83 ~~Lp~pilpp~~yp~vLhp~a~~vNiN~~I~~~Y~~~llP~~~~~gdd~nygSta~~Di~cLQALSrRIHyGKFVAEaKF  162 (253)
                      ++||+|||||++||++|||+|.+||||++||+|||++|||+++++||||||||||+||++|||+||||||||||||||||
T Consensus        91 d~lpepilP~~~yp~~Lhp~a~svNiNkkIw~~Yf~~lvP~ivkpGDDgNygSta~cD~~CLQ~LSrRIHyGKFVAEaKf  170 (262)
T KOG0795|consen   91 DNLPEPILPPIQYPQVLHPYAPSVNINKKIWNMYFKELVPLIVKPGDDGNYGSTAVCDIECLQSLSRRIHYGKFVAEAKF  170 (262)
T ss_pred             ccCCcccCCCCCCCcccccCCcccchhHHHHHHHHHHHhhhhcCCCCCCCcchHHHHHHHHHHHHHHHhhhhhhhhhhHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCC-CCCCCccccChHHHHHhhcccccccch
Q 025389          163 RDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGND-GDKQARFKVDPSVVSRLYGDWIMPFTK  241 (253)
Q Consensus       163 ~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~-~~~~~~~Ki~p~~V~~lY~~~VIPLTK  241 (253)
                      |++|+.|+++|++||++|||++||+++||++|++||++||++||||+..+.+ ....+.+||+|++|++||++|||||||
T Consensus       171 ~~~p~~Ye~aIkaqD~~~lm~~lt~~~vEe~vkkRv~~Ka~~yGqdvk~~~~~t~es~~ykI~p~lv~~iYge~viPlTK  250 (262)
T KOG0795|consen  171 QANPEAYEKAIKAQDREGLMKLLTFEAVEEKVKKRVEKKAETYGQDVKFNVDPTEESGEYKITPELVAKIYGEWVIPLTK  250 (262)
T ss_pred             hcCHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccccCCCCCCCCcccccCHHHHHHHhhheeeccch
Confidence            9999999999999999999999999999999999999999999999987643 233456999999999999999999999


Q ss_pred             HHHHHHHHhhcC
Q 025389          242 LVQVEYLLRRLD  253 (253)
Q Consensus       242 eVEVeYLlrRLd  253 (253)
                      +|||||||||||
T Consensus       251 eVeVeYLLrRLd  262 (262)
T KOG0795|consen  251 EVEVEYLLRRLD  262 (262)
T ss_pred             hhhHHHHHHhhC
Confidence            999999999997

>COG1605 PheA Chorismate mutase [Amino acid transport and metabolism]

Probab=98.38  E-value=5e-07  Score=71.67  Aligned_cols=79  Identities=28%  Similarity=0.321  Sum_probs=66.6

Q ss_pred             hhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCC
Q 025389          139 SDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQ  218 (253)
Q Consensus       139 ~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~  218 (253)
                      +|-.||+.||+|.++++.||++|.....                --+++++.|++|++|+..-|..+             
T Consensus        20 iD~~ll~Ll~eR~~l~~~Va~~K~~~g~----------------~pi~d~~RE~~vl~~~~~~~~~~-------------   70 (101)
T COG1605          20 IDRELLDLLAERLELAKEVGEAKAASGK----------------LPIYDPEREEQVLERLRAEAEKG-------------   70 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCC----------------CCCCChHHHHHHHHHHHHHHHhC-------------
Confidence            8999999999999999999999999885                35788999999999999855443             


Q ss_pred             CccccChHHHHHhhcccccccchHHHHHHHHh
Q 025389          219 ARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLR  250 (253)
Q Consensus       219 ~~~Ki~p~~V~~lY~~~VIPLTKeVEVeYLlr  250 (253)
                         .++|+.+.++|+. +|...|.+|=.|+-.
T Consensus        71 ---~l~~~~i~~~f~~-i~~~~~~~q~~~~~~   98 (101)
T COG1605          71 ---GLDPELIERLFRE-IMEASKAVQYKLLGK   98 (101)
T ss_pred             ---CCCHHHHHHHHHH-HHHHHHHHHHHHHhh
Confidence               4578888999986 488888888777643

>PF01817 CM_2: Chorismate mutase type II; InterPro: IPR020822 Chorismate mutase, 5

Probab=95.45  E-value=0.027  Score=42.08  Aligned_cols=76  Identities=21%  Similarity=0.301  Sum_probs=60.7

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      .+|-.++..|++|..+.+-||+.|-...-                 -+.++.-|+.|++++..+|..+|           
T Consensus         6 ~iD~~i~~Ll~~R~~l~~~i~~~K~~~~~-----------------~i~d~~RE~~v~~~~~~~~~~~~-----------   57 (81)
T PF01817_consen    6 EIDREIVDLLAERMDLVRKIAEYKKENGL-----------------PIFDPDREEEVLERLRELAEEGG-----------   57 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CSSTHHHHHHHHHHHHHHHHHTT-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCCcHHHHHHHHHHHHHhHhCC-----------
Confidence            58999999999999999999999976643                 35577889999999999998555           


Q ss_pred             CCccccChHHHHHhhcccccccchHHHHHH
Q 025389          218 QARFKVDPSVVSRLYGDWIMPFTKLVQVEY  247 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~VIPLTKeVEVeY  247 (253)
                           ++|+.+.++|+.. |=.++.+|-+|
T Consensus        58 -----l~~~~i~~if~~i-i~~s~~~Q~~f   81 (81)
T PF01817_consen   58 -----LDPEFIERIFRAI-IEESRAIQYEF   81 (81)
T ss_dssp             -----SEHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHH-HHHHHHHHccC
Confidence                 4677888888754 66666666554

4.99.5 from EC, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine [, ]. Prephenate dehydratase (IPR001086 from INTERPRO, 4.2.1.51 from EC, PDT) catalyses the decarboxylation of prephenate into phenylpyruvate. In microorganisms PDT is involved in the terminal pathway of the biosynthesis of phenylalanine. In some bacteria, such as Escherichia coli, PDT is part of a bifunctional enzyme (P-protein) that also catalyzes the transformation of chorismate into prephenate (chorismate mutase) while in other bacteria it is a monofunctional enzyme. The sequence of monofunctional chorismate mutase aligns well with the N-terminal part of P-proteins [].; GO: 0046417 chorismate metabolic process; PDB: 1YBZ_A 2GTV_X 2FP1_B 2F6L_B 2FP2_B 2AO2_A 3HGW_C 3HGX_B 2H9C_A 3RET_B ....

>TIGR01803 CM-like chorismate mutase related enzymes

Probab=94.62  E-value=0.073  Score=40.56  Aligned_cols=65  Identities=29%  Similarity=0.334  Sum_probs=52.2

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      ..|-.++..|++|..+.+-||+.|-..+-.                 +.+++=|+.|++|++..|..+|           
T Consensus        10 ~ID~~lv~Ll~~R~~~~~~ia~~K~~~~~~-----------------v~d~~Re~~vl~~~~~~a~~~g-----------   61 (82)
T TIGR01803        10 RIDLALVQALGRRMDYVKRASEFKRSHEAA-----------------IPAPERVAAVLPNAARWAEENG-----------   61 (82)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----------------CCChHHHHHHHHHHHHHHHHcC-----------
Confidence            368899999999999999999999775433                 4566779999999999997766           


Q ss_pred             CCccccChHHHHHhhccc
Q 025389          218 QARFKVDPSVVSRLYGDW  235 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~  235 (253)
                           ++|+.+..+|+..
T Consensus        62 -----l~~~~~~~if~~i   74 (82)
T TIGR01803        62 -----LDPPFVEGLFAQI   74 (82)
T ss_pred             -----CCHHHHHHHHHHH
Confidence                 3667777787653

This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.

>PRK08055 chorismate mutase; Provisional

Probab=94.61  E-value=0.067  Score=47.24  Aligned_cols=74  Identities=26%  Similarity=0.230  Sum_probs=61.0

Q ss_pred             HHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcc
Q 025389          142 ACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARF  221 (253)
Q Consensus       142 ~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~  221 (253)
                      .++..+++|..+.+-||+.|...+-                 -+.+++-|+.|+++++..|..+|               
T Consensus        29 ~Lv~Li~eRl~la~~VA~~K~~~~~-----------------PI~Dp~RE~~VL~~v~~~A~~~G---------------   76 (181)
T PRK08055         29 ALATLINERLSYMKDVAGYKAEHHL-----------------PIEDLTQEQKVLAEAEEEAASNG---------------   76 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCChHHHHHHHHHHHHHhhhCC---------------
Confidence            4899999999999999999987753                 35577889999999999987766               


Q ss_pred             ccChHHHHHhhcccccccchHHHHHHHH
Q 025389          222 KVDPSVVSRLYGDWIMPFTKLVQVEYLL  249 (253)
Q Consensus       222 Ki~p~~V~~lY~~~VIPLTKeVEVeYLl  249 (253)
                       ++|+.+..+|++ +|=..|.+|=.|+-
T Consensus        77 -Ldp~~i~~~F~~-~I~asK~iQ~~~~a  102 (181)
T PRK08055         77 -LDPESIKPFIVA-QMDAAKAIQYRYRA  102 (181)
T ss_pred             -CCHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence             367788888876 48888888877764

>PRK09269 chorismate mutase; Provisional

Probab=94.53  E-value=0.053  Score=48.24  Aligned_cols=74  Identities=28%  Similarity=0.323  Sum_probs=61.6

Q ss_pred             HHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcc
Q 025389          142 ACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARF  221 (253)
Q Consensus       142 ~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~  221 (253)
                      .++..|++|.-+-+-||+.|...+-                 -+.+++-|++|+++++..|..+|               
T Consensus        36 ~Lv~Li~eRl~la~~VA~~K~~~~~-----------------pI~Dp~RE~~VL~~v~~~A~~~g---------------   83 (193)
T PRK09269         36 PLVDLAAQRLALADPVALSKWDSGK-----------------PIEDPPREAQVLANVEAQAPAHG---------------   83 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCChHHHHHHHHHHHHHhhcCC---------------
Confidence            5688999999999999999987643                 45677889999999999886544               


Q ss_pred             ccChHHHHHhhcccccccchHHHHHHHH
Q 025389          222 KVDPSVVSRLYGDWIMPFTKLVQVEYLL  249 (253)
Q Consensus       222 Ki~p~~V~~lY~~~VIPLTKeVEVeYLl  249 (253)
                       ++|+.|..+|++- |=..|.||-.|+-
T Consensus        84 -Ldp~~v~~iF~~~-I~aSk~iQ~~~~a  109 (193)
T PRK09269         84 -VDPDYVRRFFRDQ-IEANKLVQYALLA  109 (193)
T ss_pred             -CCHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence             5778888898874 8899999988874

>TIGR01799 CM_T chorismate mutase domain of T-protein

Probab=93.95  E-value=0.097  Score=39.97  Aligned_cols=65  Identities=17%  Similarity=0.220  Sum_probs=52.0

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      .+|-.++..|++|..+.+-||+.|-...-                 -+.+++-|+.|++|+..+|..+|           
T Consensus        10 ~ID~~il~Ll~~R~~~~~~ia~~K~~~~~-----------------~v~d~~RE~~vl~~~~~~a~~~g-----------   61 (83)
T TIGR01799        10 GVDQELLHLLAKRLELVAQVGKVKHAAGL-----------------PIYAPEREAAMLAARREEAEKAG-----------   61 (83)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCCHHHHHHHHHHHHHHhhcCC-----------
Confidence            57999999999999999999999876543                 35567789999999999986655           


Q ss_pred             CCccccChHHHHHhhccc
Q 025389          218 QARFKVDPSVVSRLYGDW  235 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~  235 (253)
                           ++|+.+.++|+..
T Consensus        62 -----l~~~~i~~if~~i   74 (83)
T TIGR01799        62 -----IAPDLIEDVLRRF   74 (83)
T ss_pred             -----CCHHHHHHHHHHH
Confidence                 3566777777653

This model represents the chorismate mutase domain of the gamma proteobacterial "T-protein" which consists of an N-terminal chorismate mutase domain and a C-terminal prephenate dehydrogenase domain.

>smart00830 CM_2 Chorismate mutase type II

Probab=93.89  E-value=0.077  Score=39.10  Aligned_cols=65  Identities=25%  Similarity=0.297  Sum_probs=52.5

Q ss_pred             HHhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 025389          137 ATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGD  216 (253)
Q Consensus       137 a~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~  216 (253)
                      ...|-.++..|++|..+.+-||+.|...+                 .-+.+++-|+.|+++++.+|..+|          
T Consensus         5 d~iD~~ii~Ll~~R~~l~~~i~~~K~~~~-----------------~~i~d~~Re~~vl~~~~~~a~~~~----------   57 (79)
T smart00830        5 DAIDDQILALLAERAALAREVARLKAKNG-----------------LPIYDPEREAEVLERLRALAEGPG----------   57 (79)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC-----------------CCCCChHHHHHHHHHHHHHcccCC----------
Confidence            46799999999999999999999997642                 136778889999999999886544          


Q ss_pred             CCCccccChHHHHHhhcc
Q 025389          217 KQARFKVDPSVVSRLYGD  234 (253)
Q Consensus       217 ~~~~~Ki~p~~V~~lY~~  234 (253)
                            ++|+.+..+|+.
T Consensus        58 ------l~~~~~~~if~~   69 (79)
T smart00830       58 ------LDPELVERIFRE   69 (79)
T ss_pred             ------cCHHHHHHHHHH
Confidence                  467777777764

Chorismate mutase, catalyses the conversion of chorismate to prephenate in the pathway of tyrosine and phenylalanine biosynthesis. This enzyme is negatively regulated by tyrosine, tryptophan and phenylalanine PUBMED:9642265, PUBMED:9497350.

>PRK06285 chorismate mutase; Provisional

Probab=93.25  E-value=0.2  Score=39.35  Aligned_cols=77  Identities=19%  Similarity=0.228  Sum_probs=61.2

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      ..|-.++..|++|..+.+-||+.|-..+-                 -+.+++-|+.|+.++..+|..+|           
T Consensus        18 ~ID~~iv~Ll~~R~~l~~~I~~~K~~~~~-----------------~v~dp~RE~~vl~~~~~~a~~~~-----------   69 (96)
T PRK06285         18 EIDEQIIDLIAERTSLAKEIAELKKSLGM-----------------PIFDPEREDYIHEKIRKLCEEHN-----------   69 (96)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCCChHHHHHHHHHHHHHhhhCC-----------
Confidence            47889999999999999999998865533                 35577889999999999987655           


Q ss_pred             CCccccChHHHHHhhcccccccchHHHHHHH
Q 025389          218 QARFKVDPSVVSRLYGDWIMPFTKLVQVEYL  248 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~VIPLTKeVEVeYL  248 (253)
                           ++|+.+..+|+. ||=.+|.+|-+||
T Consensus        70 -----l~~~~i~~if~~-Ii~~s~~~Q~~~~   94 (96)
T PRK06285         70 -----IDENIGLKIMKI-LMEHSKELQKEYL   94 (96)
T ss_pred             -----CCHHHHHHHHHH-HHHHHHHHHHHHh
Confidence                 467788888875 4777777777765

>PRK09239 chorismate mutase; Provisional

Probab=93.13  E-value=0.22  Score=40.13  Aligned_cols=64  Identities=17%  Similarity=0.180  Sum_probs=51.6

Q ss_pred             HHhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 025389          137 ATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGD  216 (253)
Q Consensus       137 a~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~  216 (253)
                      -.+|-.++..|++|..+.+-||+.|-..+-                 -+.+++-|++|++|++..|..+|          
T Consensus        20 D~ID~eIv~LLa~R~~l~~~Ia~~K~~~~~-----------------~i~dp~RE~~vl~~~~~~a~~~g----------   72 (104)
T PRK09239         20 DNIDAALIHMLAERFKCTQAVGVLKAEHGL-----------------PPADPAREAYQIERLRQLAKDAN----------   72 (104)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCCHHHHHHHHHHHHHHHHHCC----------
Confidence            358999999999999999999998865422                 35677889999999999998777          


Q ss_pred             CCCccccChHHHHHhhc
Q 025389          217 KQARFKVDPSVVSRLYG  233 (253)
Q Consensus       217 ~~~~~Ki~p~~V~~lY~  233 (253)
                            ++|+.+.++|+
T Consensus        73 ------l~p~~~~~i~~   83 (104)
T PRK09239         73 ------LDPDFAEKFLN   83 (104)
T ss_pred             ------CCHHHHHHHHH
Confidence                  35666777775

>TIGR01791 CM_archaeal chorismate mutase, archaeal type

Probab=92.97  E-value=0.2  Score=38.00  Aligned_cols=64  Identities=23%  Similarity=0.336  Sum_probs=52.3

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      ..|-.++..|++|..+.+-||+.|-...                 .-+.+++-|+.|++|+...|...|           
T Consensus        10 ~iD~~i~~Ll~~R~~l~~~i~~~K~~~g-----------------~~i~d~~RE~~v~~~~~~~~~~~~-----------   61 (83)
T TIGR01791        10 EIDKSILDLIEKRIKIARKIGEIKHNNG-----------------LPITDEEREERVIERLRNTARNLG-----------   61 (83)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcC-----------------CCCCChHHHHHHHHHHHHHHHhcC-----------
Confidence            5799999999999999999999885543                 256788899999999999986544           


Q ss_pred             CCccccChHHHHHhhcc
Q 025389          218 QARFKVDPSVVSRLYGD  234 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~  234 (253)
                           ++|+.+..+|+.
T Consensus        62 -----l~~~~i~~if~~   73 (83)
T TIGR01791        62 -----LDVLKLKEIFEI   73 (83)
T ss_pred             -----CCHHHHHHHHHH
Confidence                 467778888864

This model represents a clade of archaeal chorismate mutases. Chorismate mutase catalyzes the conversion of chorismate into prephenate which is subsequently converted into either phenylalanine or tyrosine. In Sulfolobus this gene is found as a fusion with prephenate dehydrogenase (although the non-TIGR annotation contains a typographical error indicating it as a dehydratase) which is the next enzyme in the tyrosine biosynthesis pathway. The Archaeoglobus gene contains an N-terminal prephenate dehydrogenase domain and a C-terminal prephenate dehydratase domain followed by a regulatory amino acid-binding ACT domain. The Thermoplasma volcanium gene is adjacent to prephenate dehydratase.

>TIGR01797 CM_P_1 chorismate mutase domain of proteobacterial P-protein, clade 1

Probab=92.58  E-value=0.2  Score=38.26  Aligned_cols=65  Identities=17%  Similarity=0.121  Sum_probs=52.0

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      ..|-.++..|++|..+..-||+.|-..+-                 -+.+++-|+.|++|+...|..+|           
T Consensus        10 ~ID~~lv~Ll~~R~~~~~~i~~~K~~~~~-----------------~v~dp~RE~~vl~~~~~~~~~~~-----------   61 (83)
T TIGR01797        10 AIDEKLLKLLAERRELAFEVGKSKLLSHR-----------------PVRDIERERDLLQRLITLGKAYH-----------   61 (83)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCCChHHHHHHHHHHHHHhhhCC-----------
Confidence            36889999999999999999998876532                 45677889999999999886654           


Q ss_pred             CCccccChHHHHHhhccc
Q 025389          218 QARFKVDPSVVSRLYGDW  235 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~  235 (253)
                           ++|+.+..+|+..
T Consensus        62 -----l~~~~i~~if~~i   74 (83)
T TIGR01797        62 -----LDAHYITRLFQLI   74 (83)
T ss_pred             -----CCHHHHHHHHHHH
Confidence                 4677778888754

This model represents the chorismate mutase domain of the gamma and beta proteobacterial "P-protein" which contains an N-terminal chorismate mutase domain and a C-terminal prephenate dehydratase domain.

>TIGR01806 CM_mono2 chorismate mutase, putative

Probab=92.22  E-value=0.26  Score=40.23  Aligned_cols=74  Identities=22%  Similarity=0.274  Sum_probs=58.6

Q ss_pred             HHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCcc
Q 025389          142 ACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARF  221 (253)
Q Consensus       142 ~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~  221 (253)
                      .++..|++|..+.+-||+.|-..+-                 -+.+++-|+.|++|+...|+.+|               
T Consensus         8 eLv~Ll~eR~~la~eVa~~K~~~~~-----------------pI~Dp~RE~~Vl~~~~~~a~~~g---------------   55 (114)
T TIGR01806         8 QLVDAANERLQLADDVAGYKARNNL-----------------PIEDSPREEQVLDSLRAQAQSAG---------------   55 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCChHHHHHHHHHHHHHhHcCC---------------
Confidence            5789999999999999999876543                 35567789999999999887655               


Q ss_pred             ccChHHHHHhhcccccccchHHHHHHHH
Q 025389          222 KVDPSVVSRLYGDWIMPFTKLVQVEYLL  249 (253)
Q Consensus       222 Ki~p~~V~~lY~~~VIPLTKeVEVeYLl  249 (253)
                       ++|+.+..+|+.. |=..|.+|-.|+-
T Consensus        56 -L~~~~i~~if~~I-i~~Sk~~Q~~~~~   81 (114)
T TIGR01806        56 -LDPDYVTRFFQAQ-INANKAIQYRLVS   81 (114)
T ss_pred             -CCHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence             4667788888764 7778888877763

This model represents a clade of probable chorismate mutases from alpha, beta and gamma proteobacteria as well as Mycobacterium tuberculosis and a clade of nematodes. Although the most likely function for the enzymes represented by this model is as a chorismate mutase, in no species are these enzymes the sole chorismate mutase in the genome. Also, in no case are these enzymes located in a region of the genome proximal to any other enzymes involved in chorismate pathways. Although the Pantoea enzyme has been shown to complement a CM-free mutant of E. coli, this was also shown to be the case with isochorismate-pyruvate lyase which only has a secondary (non-physiologically relevant) chorismate mutase activity. This enzyme is believed to be a homodimer and be localized to the periplasm.

>TIGR01795 CM_mono_cladeE monofunctional chorismate mutase, alpha proteobacterial type

Probab=88.58  E-value=1.1  Score=35.52  Aligned_cols=55  Identities=18%  Similarity=0.151  Sum_probs=45.2

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccc
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEV  209 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~  209 (253)
                      ..|-.++..|++|..+-.-||+.|=..+-                 .+.+++=|+.|+++++..|..+|-++
T Consensus        14 ~ID~qLv~LL~~R~~~~~~ia~~K~~~~~-----------------~v~dp~Re~~vl~~~~~~a~~~gl~p   68 (94)
T TIGR01795        14 NIDAAVIHMLAERFKCTSQVGVLKANAGL-----------------APADPAREDYQIARLRRLAIDAGLDP   68 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----------------CCCCHHHHHHHHHHHHHHHHHCCCCH
Confidence            46889999999999999999888754422                 46677889999999999999988544

The alpha proteobacterial members are trusted because the pathways of CM are evident and there is only one plausible CM in the genome. In S. coelicolor, however, there is another aparrent monofunctional CM.

>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional

Probab=87.56  E-value=0.63  Score=45.12  Aligned_cols=65  Identities=18%  Similarity=0.128  Sum_probs=52.6

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      ..|-+++..|++|.-+.+-||+.|-..+-..|                 +++-|+.|++|++..|+.             
T Consensus        16 ~ID~~ii~Ll~~R~~~~~~I~~~K~~~~~pi~-----------------dp~RE~~vl~~~~~~a~~-------------   65 (386)
T PRK10622         16 ALDEKLLALLAERRELAVEVAKAKLLSHRPVR-----------------DIDRERDLLERLITLGKA-------------   65 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCc-----------------ChHHHHHHHHHHHHhccc-------------
Confidence            36889999999999999999999987764433                 567799999999888743             


Q ss_pred             CCccccChHHHHHhhccc
Q 025389          218 QARFKVDPSVVSRLYGDW  235 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~  235 (253)
                         ..++|+.+.+||+..
T Consensus        66 ---~~l~~~~i~~if~~i   80 (386)
T PRK10622         66 ---HHLDAHYITRLFQLI   80 (386)
T ss_pred             ---CCCCHHHHHHHHHHH
Confidence               346788888888765

>PRK07075 isochorismate-pyruvate lyase; Reviewed

Probab=84.99  E-value=2.1  Score=34.23  Aligned_cols=64  Identities=20%  Similarity=0.260  Sum_probs=49.3

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      ..|-.++..|++|..+-+-||+.|-.. -                 -+.+++=|+.|++|+...|..+|           
T Consensus        19 ~ID~~iv~LL~eR~~~~~~ia~~K~~~-~-----------------~i~d~~Re~~vl~~~~~~a~~~g-----------   69 (101)
T PRK07075         19 RLDRDIIAALGRRMQYVKAASRFKPSE-A-----------------SIPAPERVAAMLPERRRWAEQAG-----------   69 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcC-C-----------------CCCChHHHHHHHHHHHHHhhcCC-----------
Confidence            368889999999999999999988532 1                 24456678999999999886544           


Q ss_pred             CCccccChHHHHHhhccc
Q 025389          218 QARFKVDPSVVSRLYGDW  235 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~  235 (253)
                           ++|+.+..+|+..
T Consensus        70 -----l~~~~i~~if~~I   82 (101)
T PRK07075         70 -----LDADFVEKLFAQL   82 (101)
T ss_pred             -----CCHHHHHHHHHHH
Confidence                 4677888888653

>PRK07248 hypothetical protein; Provisional

Probab=83.05  E-value=1.6  Score=33.37  Aligned_cols=49  Identities=16%  Similarity=0.095  Sum_probs=41.3

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHH
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAM  203 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~  203 (253)
                      ..|-.++..|++|..+.+-||+.|-..+-                 -+.++.-|+.|++|+...|.
T Consensus        12 ~iD~~i~~Ll~~R~~l~~~I~~~K~~~~~-----------------~v~d~~RE~~vl~~~~~~~~   60 (87)
T PRK07248         12 QIDDQLVALLEKRMALVEQVVAYKKATGK-----------------PVLDTKREQVILDKVSSLVE   60 (87)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCCChHHHHHHHHHHHHHcc
Confidence            47899999999999999999999976643                 35567789999999988875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	253
5csm_A	256	Yeast Chorismate Mutase, T226s Mutant, Complex With		6e-48
3csm_A	256	Structure Of Yeast Chorismate Mutase With Bound Trp		7e-48
4csm_A	256	Yeast Chorismate Mutase + Tyr + Endooxabicyclic Inh		8e-48
1csm_A	256	The Crystal Structure Of Allosteric Chorismate Muta		1e-47

>pdb|5CSM|A Chain A, Yeast Chorismate Mutase, T226s Mutant, Complex With Trp Length = 256

Iteration: 1
 Score =  187 bits (474), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 98/251 (39%), Positives = 150/251 (59%), Gaps = 9/251 (3%)
Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASF--PGFSGSLLQYIVQQSEA 64
           L L  +RD L+R ED+IIF  IER+        Y+ ++     P F GS L + +   E 
Sbjct: 10  LNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEI 69
Query: 65  MQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLF 124
             +   R+E+P+E+PFFPDK+  SF+P   YPQ+L P    +N N  I  +Y  +++PL 
Sbjct: 70  AHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLI 129
Query: 125 VA-EGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALM 182
              +GDD  N+ S AT D+ CLQ+LSRRIH+GKFVAE KF+     Y   I++KD + +M
Sbjct: 130 SKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIM 189
Query: 183 NLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKL 242
             +T   VE+ + +R+ KKA V G + +     +++   ++ P  + ++Y + ++P TK 
Sbjct: 190 KNITNSAVEEKILERLTKKAEVYGVDPT-----ERRIERRISPEYLVKIYKEIVIPITKE 244
Query: 243 VQVEYLLRRLD 253
           V+VEYLLRRL+
Sbjct: 245 VEVEYLLRRLE 255

>pdb|3CSM|A Chain A, Structure Of Yeast Chorismate Mutase With Bound Trp And An Endooxabicyclic Inhibitor Length = 256

Iteration: 1
 Score =  186 bits (473), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 98/251 (39%), Positives = 150/251 (59%), Gaps = 9/251 (3%)
Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASF--PGFSGSLLQYIVQQSEA 64
           L L  +RD L+R ED+IIF  IER+        Y+ ++     P F GS L + +   E 
Sbjct: 10  LNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEI 69
Query: 65  MQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLF 124
             +   R+E+P+E+PFFPDK+  SF+P   YPQ+L P    +N N  I  +Y  +++PL 
Sbjct: 70  AHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLI 129
Query: 125 VA-EGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALM 182
              +GDD  N+ S AT D+ CLQ+LSRRIH+GKFVAE KF+     Y   I++KD + +M
Sbjct: 130 SKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIM 189
Query: 183 NLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKL 242
             +T   VE+ + +R+ KKA V G + +     +++   ++ P  + ++Y + ++P TK 
Sbjct: 190 KNITNSAVEEKILERLTKKAEVYGVDPT-----ERRIERRITPEYLVKIYKEIVIPITKE 244
Query: 243 VQVEYLLRRLD 253
           V+VEYLLRRL+
Sbjct: 245 VEVEYLLRRLE 255

>pdb|4CSM|A Chain A, Yeast Chorismate Mutase + Tyr + Endooxabicyclic Inhibitor Length = 256

Iteration: 1
 Score =  186 bits (473), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 100/251 (39%), Positives = 150/251 (59%), Gaps = 9/251 (3%)
Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASF--PGFSGSLLQYIVQQSEA 64
           L L  +RD L+R ED+IIF  IER+        Y+ ++     P F GS L + +   E 
Sbjct: 10  LNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEI 69
Query: 65  MQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLF 124
             +   R+E+P+E+PFFPDK+  SF+P   YPQ+L P    +N N  I  +Y  +++PL 
Sbjct: 70  AHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLI 129
Query: 125 VA-EGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALM 182
              +GDD  N+ S AT D+ CLQ+LSRRIH+GKFVAE KF+     Y   I++KD + +M
Sbjct: 130 SKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIM 189
Query: 183 NLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKL 242
             +T   VE+ + +R+ KKA V G  V   N+  ++   ++ P  + ++Y + ++P TK 
Sbjct: 190 KNITNSAVEEKILERLTKKAEVYG--VDPTNESGER---RITPEYLVKIYKEIVIPITKE 244
Query: 243 VQVEYLLRRLD 253
           V+VEYLLRRL+
Sbjct: 245 VEVEYLLRRLE 255

>pdb|1CSM|A Chain A, The Crystal Structure Of Allosteric Chorismate Mutase At 2.2 Angstroms Resolution Length = 256

Iteration: 1
 Score =  186 bits (471), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 100/251 (39%), Positives = 150/251 (59%), Gaps = 9/251 (3%)
Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASF--PGFSGSLLQYIVQQSEA 64
           L L  +RD L+R ED+IIF  IER+        Y+ ++     P F GS L + +   E 
Sbjct: 10  LNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEI 69
Query: 65  MQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLF 124
             +   R+E+P+E+PFFPDK+  SF+P   YPQ+L P    +N N  I  +Y  +++PL 
Sbjct: 70  AHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLI 129
Query: 125 VA-EGDD-GNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALM 182
              +GDD  N+ S AT D+ CLQ+LSRRIH+GKFVAE KF+     Y   I++KD + +M
Sbjct: 130 SKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIM 189
Query: 183 NLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKL 242
             +T   VE+ + +R+ KKA V G  V   N+  ++   ++ P  + ++Y + ++P TK 
Sbjct: 190 KNITNSAVEEKILERLTKKAEVYG--VDPTNESGER---RIIPEYLVKIYKEIVIPITKE 244
Query: 243 VQVEYLLRRLD 253
           V+VEYLLRRL+
Sbjct: 245 VEVEYLLRRLE 255

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
5csm_A	256	Chorismate mutase; chorismate pyruvatemutase, allo	1e-128

>5csm_A Chorismate mutase; chorismate pyruvatemutase, allosteric protein, complex (ISOM peptide), transition state analog; HET: TRP; 2.00A {Saccharomyces cerevisiae} SCOP: a.130.1.2 PDB: 3csm_A* 2csm_A* 4csm_A* 1csm_A* Length = 256

 Score =  363 bits (933), Expect = e-128
 Identities = 96/251 (38%), Positives = 147/251 (58%), Gaps = 9/251 (3%)

Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASF--PGFSGSLLQYIVQQSEA 64
           L L  +RD L+R ED+IIF  IER+        Y+ ++     P F GS L + +   E 
Sbjct: 10  LNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEI 69

Query: 65  MQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLF 124
             +   R+E+P+E+PFFPDK+  SF+P   YPQ+L P    +N N  I  +Y  +++PL 
Sbjct: 70  AHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLI 129

Query: 125 VAEG--DDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALM 182
                 D  N+ S AT D+ CLQ+LSRRIH+GKFVAE KF+     Y   I++KD + +M
Sbjct: 130 SKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIM 189

Query: 183 NLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKL 242
             +T   VE+ + +R+ KKA V G + +     +++   ++ P  + ++Y + ++P TK 
Sbjct: 190 KNITNSAVEEKILERLTKKAEVYGVDPT-----ERRIERRISPEYLVKIYKEIVIPITKE 244

Query: 243 VQVEYLLRRLD 253
           V+VEYLLRRL+
Sbjct: 245 VEVEYLLRRLE 255

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
5csm_A	256	Chorismate mutase; chorismate pyruvatemutase, allo	100.0
3ret_A	101	Salicylate biosynthesis protein PCHB; intertwined	94.8
1ecm_A	109	Endo-oxabicyclic transition state analogue; P-prot	93.85
3rmi_A	114	Chorismate mutase protein; emerald biostructures,	93.27
2gtv_X	104	CM, chorismate mutase; four-helix bundle, isomeras	90.8
2d8d_A	90	Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase	90.77
2fp1_A	166	Chorismate mutase; alpha-helical, isomerase; 1.55A	89.82
2gbb_A	156	Putative chorismate mutase; alpha helical bundle,	87.58
2vkl_A	90	RV0948C/MT0975; helical, intracellular, chorismate	80.96

>5csm_A Chorismate mutase; chorismate pyruvatemutase, allosteric protein, complex (ISOM peptide), transition state analog; HET: TRP; 2.00A {Saccharomyces cerevisiae} SCOP: a.130.1.2 PDB: 3csm_A* 2csm_A* 4csm_A* 1csm_A*

Probab=100.00  E-value=1.1e-131  Score=889.61  Aligned_cols=247  Identities=39%  Similarity=0.721  Sum_probs=237.2

Q ss_pred             CCCCccChHHHHHHHHhhhhhhhHHHHhhhCCCCCccccCCCC--CCCCCCCchHHHHHHHhHhhhhhhccccCCCCCCC
Q 025389            2 ALAGDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSY--ASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESP   79 (253)
Q Consensus         2 ~~~~~l~Ld~IR~~LiR~EDTIIF~LIERaqf~~N~~~Y~~~~--~~~~~f~gS~le~~l~etE~~ha~~rRY~sPdE~P   79 (253)
                      .++++||||+||++||||||||||+|||||||++|+.+|++|+  ++++||+|||+||||+|||++||++|||+||||||
T Consensus         5 ~~~~~L~L~~IR~~LiR~EDTIiF~LIERaqf~~N~~~Y~~~~~~~~~~~f~gS~ld~~l~etE~~ha~vrRY~sPdE~P   84 (256)
T 5csm_A            5 KPETVLNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEIAHSRIRRFESPDETP   84 (256)
T ss_dssp             SHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGTSTTCTTSCCTTCCSCHHHHHHHHHHHHHHHTTGGGSTTCCC
T ss_pred             CccccCcHHHHHHHHHhhhhhhhhhHHHhhhcccChHhhCCCCCCCCCCCCCccHHHHHHHHHHHHHHhhcccCCCCcCC
Confidence            3578899999999999999999999999999999999999999  99999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCccccCCCCCCchhHHHHHHHHHhhhccccc-CC-CCCCchhHHHhhHHHHHHhHhhhhhchhh
Q 025389           80 FFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVA-EG-DDGNYASTATSDLACLQALSRRIHYGKFV  157 (253)
Q Consensus        80 FfP~~Lp~pilpp~~yp~vLhp~a~~vNiN~~I~~~Y~~~llP~~~~-~g-dd~nygSta~~Di~cLQALSrRIHyGKFV  157 (253)
                      |||++||+|||||++||++|||++++||||++||+||+++|||++|+ .| |||||||||+||++|||||||||||||||
T Consensus        85 FfP~~Lp~piLpp~~yP~vLhp~~~~vNvN~~I~~~Y~~~ilP~~~~~~G~dd~NyGSta~~Di~cLQALSRRIHfGKFV  164 (256)
T 5csm_A           85 FFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLISKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFV  164 (256)
T ss_dssp             SCTTTCCCCSSCCCCCCCCSCTTGGGCCCHHHHHHHHHHHTHHHHSSSSSCCTTCHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CCccccccccCCCCCCCcccCCCCCcccccHHHHHHHHHHhhHHhhCCCCCCCCccHHHHHHHHHHHHHHHHHHHcchhH
Confidence            99999999999999999999999999999999999999999999998 78 67999999999999999999999999999


Q ss_pred             hhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCccccChHHHHHhhccccc
Q 025389          158 AEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIM  237 (253)
Q Consensus       158 AEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~Ki~p~~V~~lY~~~VI  237 (253)
                      ||||||++|+.|++||+++|++|||++|||++||++||+||++||++||||++.     .++.+||||++|++||++|||
T Consensus       165 AEaKF~~~p~~y~~lI~a~D~~~im~llT~~aVE~~Vl~Rv~~KA~~yGqd~~~-----~~~~~Ki~p~~v~~lY~~~vI  239 (256)
T 5csm_A          165 AEAKFQSDIPLYTKLIKSKDVEGIMKNITNSAVEEKILERLTKKAEVYGVDPTE-----RRIERRISPEYLVKIYKEIVI  239 (256)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCHHHHHHHTCCHHHHHHHHHHHHHHHHHTTSCCC-----------CCCHHHHHHHHHHTHH
T ss_pred             hHHHHhhCHHHHHHHHHccCHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCCC-----CCCCCCcCHHHHHHHHhccee
Confidence            999999999999999999999999999999999999999999999999999982     366799999999999999999


Q ss_pred             ccchHHHHHHHHhhcC
Q 025389          238 PFTKLVQVEYLLRRLD  253 (253)
Q Consensus       238 PLTKeVEVeYLlrRLd  253 (253)
                      ||||+|||+|||||||
T Consensus       240 PLTK~VEVeYLLrRLd  255 (256)
T 5csm_A          240 PITKEVEVEYLLRRLE  255 (256)
T ss_dssp             HHHHHHHHHHHHTCSC
T ss_pred             eCchHHHHHHHHHHhc
Confidence            9999999999999997

>3ret_A Salicylate biosynthesis protein PCHB; intertwined dimer, lyase, mutase; HET: SAL; 1.79A {Pseudomonas aeruginosa} SCOP: a.130.1.1 PDB: 2h9d_A 3rem_A* 3hgx_A* 3hgw_C 2h9c_A

Probab=94.80  E-value=0.054  Score=41.61  Aligned_cols=77  Identities=21%  Similarity=0.246  Sum_probs=62.1

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      ..|-.++..|++|..+-+-||+.|-. .                 ..+.+++-|+.|++|+...|...|           
T Consensus        19 ~iD~~il~LL~~R~~~~~~i~~~K~~-~-----------------~~i~dp~RE~~vl~~~~~~a~~~~-----------   69 (101)
T 3ret_A           19 RIDLDIVQALGRRMDYVKAASRFEAS-E-----------------AAIPAPERVAAMLPERARWAEENG-----------   69 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHGGGCSS-G-----------------GGTTCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhc-C-----------------CCCCCHHHHHHHHHHHHHHhhhCC-----------
Confidence            47999999999999999999999932 2                 246678899999999999987655           


Q ss_pred             CCccccChHHHHHhhcccccccchHHHHHHHH
Q 025389          218 QARFKVDPSVVSRLYGDWIMPFTKLVQVEYLL  249 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~VIPLTKeVEVeYLl  249 (253)
                           ++|+.|.++|+.. |=..+..|-.++-
T Consensus        70 -----l~~~~i~~if~~i-i~~s~~~Q~~~~~   95 (101)
T 3ret_A           70 -----LDAPFVEGLFAQI-IHWYIAEQIKYWR   95 (101)
T ss_dssp             -----SCHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence                 4778899999864 6667777766654

>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1

Probab=93.85  E-value=0.064  Score=41.47  Aligned_cols=77  Identities=18%  Similarity=0.130  Sum_probs=59.8

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      ..|-.++..|++|..+-+-||+.|-...-                 -+.+++-|+.|++|+...|...|           
T Consensus        16 ~iD~~L~~LL~~R~~~~~~v~~~K~~~~~-----------------~i~dp~RE~~vl~~~~~~a~~~~-----------   67 (109)
T 1ecm_A           16 ALDEKLLALLAERRELAVEVGKAKLLSHR-----------------PVRDIDRERDLLERLITLGKAHH-----------   67 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CSCCHHHHHHHHHHHHHHHHHHT-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCCCHHHHHHHHHHHHHHhHhCC-----------
Confidence            47999999999999999999999976432                 35567889999999999987655           


Q ss_pred             CCccccChHHHHHhhcccccccchHHHHHHH
Q 025389          218 QARFKVDPSVVSRLYGDWIMPFTKLVQVEYL  248 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~VIPLTKeVEVeYL  248 (253)
                           ++|+.+.++|+.. |=..+.+|-.|+
T Consensus        68 -----l~~~~i~~if~~i-i~~s~~~q~~~~   92 (109)
T 1ecm_A           68 -----LDAHYITRLFQLI-IEDSVLTQQALL   92 (109)
T ss_dssp             -----CCHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence                 4677888888764 445555665554

>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}

Probab=93.27  E-value=0.11  Score=41.03  Aligned_cols=77  Identities=17%  Similarity=0.102  Sum_probs=60.2

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      ..|-.++..|++|..+-+-||+.|-...-                 -+.+++-|+.|++|+...|...|           
T Consensus        23 ~ID~~il~LL~~R~~~~~~I~~~K~~~~~-----------------~i~dp~RE~~vl~~~~~~a~~~~-----------   74 (114)
T 3rmi_A           23 NFDITLIHILAERFRCTQAIGRLKARYNL-----------------PAVDPLREQYQIKRLRKLAIDTH-----------   74 (114)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CSCCHHHHHHHHHHHHHHHHHTT-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCcCHHHHHHHHHHHHHHHHhCC-----------
Confidence            36889999999999999999999943221                 46788889999999999986655           


Q ss_pred             CCccccChHHHHHhhcccccccchHHHHHHH
Q 025389          218 QARFKVDPSVVSRLYGDWIMPFTKLVQVEYL  248 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~VIPLTKeVEVeYL  248 (253)
                           ++|+.|.++|+.. |=..+..|-+++
T Consensus        75 -----l~~~~i~~if~~I-i~~S~~~Q~~~~   99 (114)
T 3rmi_A           75 -----FDPDFAEKFLKFI-IKEVVHQHEVIA   99 (114)
T ss_dssp             -----CCHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             -----CCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence                 4778889999864 556666665554

>2gtv_X CM, chorismate mutase; four-helix bundle, isomerase; HET: TSA; NMR {Methanocaldococcus jannaschii} SCOP: a.130.1.3

Probab=90.80  E-value=0.15  Score=40.05  Aligned_cols=78  Identities=22%  Similarity=0.244  Sum_probs=61.6

Q ss_pred             HhhHHHH--------HHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccc
Q 025389          138 TSDLACL--------QALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEV  209 (253)
Q Consensus       138 ~~Di~cL--------QALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~  209 (253)
                      ..|-.+|        ..|++|..+.+-||+.|-...-                 -+-+++-|+.|++|++..|..+|   
T Consensus        14 ~ID~~il~~~~~~~~~Ll~eR~~l~~~Va~~K~~~g~-----------------pi~dp~RE~~vl~~~~~~~~~~~---   73 (104)
T 2gtv_X           14 EIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLGI-----------------PINDPEREKYIYDRIRKLCKEHN---   73 (104)
T ss_dssp             HHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHTS-----------------CSCCHHHHHHHHHHHHHHHHHHT---
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCcChHHHHHHHHHHHHHhhcCC---
Confidence            4788999        9999999999999999865432                 35577889999999999998766   


Q ss_pred             cCCCCCCCCCccccChHHHHHhhcccccccchHHHHHHHH
Q 025389          210 SLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLL  249 (253)
Q Consensus       210 ~~~~~~~~~~~~Ki~p~~V~~lY~~~VIPLTKeVEVeYLl  249 (253)
                                   ++|+.+.++|+.. |=..|.+|-.++-
T Consensus        74 -------------l~~~~i~~if~~i-i~~s~~~Q~~~l~   99 (104)
T 2gtv_X           74 -------------VDENIGIKIFQRL-IEHNKALQKQYLE   99 (104)
T ss_dssp             -------------SCSHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             -------------CCHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence                         3567888898864 5666777766653

>2d8d_A Aroag, phospho-2-dehydro-3-deoxyheptonate aldolase/chori mutase; chorismate, dimer, structural genomics, NPPSFA; 1.15A {Thermus thermophilus} SCOP: a.130.1.1 PDB: 2d8e_A

Probab=90.77  E-value=0.2  Score=37.43  Aligned_cols=64  Identities=9%  Similarity=0.010  Sum_probs=51.9

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      .+|-.++..|++|..+.+-||+.|-...-                 .+.+++-|+.|++|+...| .             
T Consensus        14 ~iD~~l~~Ll~~R~~~~~~i~~~K~~~~~-----------------~i~dp~RE~~vl~~~~~~~-~-------------   62 (90)
T 2d8d_A           14 RVNREILRLLSERGRLVQEIGRLQTELGL-----------------PHYDPKREEEMLAYLTAEN-P-------------   62 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------CSCCHHHHHHHHHHHHHHC-C-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCcCHHHHHHHHHHHHHHc-c-------------
Confidence            47999999999999999999999865432                 3556788999999998764 1             


Q ss_pred             CCccccChHHHHHhhccc
Q 025389          218 QARFKVDPSVVSRLYGDW  235 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~  235 (253)
                         ..++|+.|.++|+..
T Consensus        63 ---~~l~~~~i~~if~~i   77 (90)
T 2d8d_A           63 ---GPFPDETIRKLFKEI   77 (90)
T ss_dssp             ---SSSCHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHH
Confidence               346889999999865

>2fp1_A Chorismate mutase; alpha-helical, isomerase; 1.55A {Mycobacterium tuberculosis} SCOP: a.130.1.4 PDB: 2f6l_A 2fp2_A* 2ao2_A*

Probab=89.82  E-value=0.32  Score=40.83  Aligned_cols=74  Identities=18%  Similarity=0.244  Sum_probs=57.2

Q ss_pred             HHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCc
Q 025389          141 LACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQAR  220 (253)
Q Consensus       141 i~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~  220 (253)
                      -.++..|++|..+-+-||+.|-..+-                 -+.+++=|+.|++|+...|..+|              
T Consensus         7 ~~Lv~LLaeR~~la~~Va~~K~~~~~-----------------pI~dp~RE~eVL~r~~~~a~~~g--------------   55 (166)
T 2fp1_A            7 AELVDAAAERLEVADPVAAFKWRAQL-----------------PIEDSGRVEQQLAKLGEDARSQH--------------   55 (166)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHHTC-----------------CSCCHHHHHHHHHHHHHHHHHTT--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCChHHHHHHHHHHHHHHHhCC--------------
Confidence            35788999999999999999975432                 35567789999999999997665              


Q ss_pred             cccChHHHHHhhcccccccchHHHHHHH
Q 025389          221 FKVDPSVVSRLYGDWIMPFTKLVQVEYL  248 (253)
Q Consensus       221 ~Ki~p~~V~~lY~~~VIPLTKeVEVeYL  248 (253)
                        ++|+.|.++|+.. |=..+.+|-.|+
T Consensus        56 --L~~~~i~~ifr~I-i~~S~~~Q~~~~   80 (166)
T 2fp1_A           56 --IDPDYVTRVFDDQ-IRATEAIEYSRF   80 (166)
T ss_dssp             --CCHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             --CCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence              4678888888875 556666665554

>2gbb_A Putative chorismate mutase; alpha helical bundle, isomerase; HET: CIT; 2.10A {Yersinia pestis biovar microtus str}

Probab=87.58  E-value=0.36  Score=40.20  Aligned_cols=72  Identities=21%  Similarity=0.179  Sum_probs=54.7

Q ss_pred             HHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCccc
Q 025389          143 CLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFK  222 (253)
Q Consensus       143 cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~K  222 (253)
                      ++..|++|..+.+-||+.|-...-                 -+-+++-|+.|++|+..+|..+|                
T Consensus         6 Ll~LL~eR~~la~~Va~~K~~~g~-----------------pI~Dp~RE~evL~~l~~~a~~~g----------------   52 (156)
T 2gbb_A            6 TAPLINERLSYMKDVAGYKAENHL-----------------PIEDRIQEEKVINSAMAQAESLG----------------   52 (156)
T ss_dssp             SHHHHHHHHTTHHHHHHHHHHTTC-----------------CSCCHHHHHHHHHHHHHHHHHTT----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCChHHHHHHHHHHHHHhhcCC----------------
Confidence            478899999999999999976542                 24467789999999999997655                


Q ss_pred             cChHHHHHhhcccccccchHHHHHHH
Q 025389          223 VDPSVVSRLYGDWIMPFTKLVQVEYL  248 (253)
Q Consensus       223 i~p~~V~~lY~~~VIPLTKeVEVeYL  248 (253)
                      ++|+.|.++|+.. |=..+.+|-.++
T Consensus        53 L~~~~i~~ifr~I-i~~S~~~Q~~~~   77 (156)
T 2gbb_A           53 LNGESIKPLMVAQ-INAAKAIQYRYR   77 (156)
T ss_dssp             BCHHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHH-HHHHHHHHHHHH
Confidence            4677888888864 555566665544

>2vkl_A RV0948C/MT0975; helical, intracellular, chorismate mutase, isomerase; 1.65A {Mycobacterium tuberculosis} PDB: 2qbv_A 2w19_C 2w1a_C*

Probab=80.96  E-value=0.49  Score=35.87  Aligned_cols=62  Identities=15%  Similarity=0.056  Sum_probs=47.6

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      ..|-.++..|++|..+-+-||+.|-...-                 .+.+++-|+.|++|+..+|.              
T Consensus        23 ~iD~~Ll~LL~~R~~~~~~Ig~~K~~~~~-----------------~i~dp~RE~~vl~~~~~~a~--------------   71 (90)
T 2vkl_A           23 RLDAEILALVKRRAEVSKAIGKARMASGG-----------------TRLVHSREMKVIERYSELGP--------------   71 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------CCCTTTHHHHHHHHHHTTCH--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-----------------CCCChHHHHHHHHHHHHHcc--------------
Confidence            47899999999999999999999976532                 24456668899999987663              


Q ss_pred             CCccccChHHHHHhhccc
Q 025389          218 QARFKVDPSVVSRLYGDW  235 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~  235 (253)
                           .+|+.+.++|+..
T Consensus        72 -----~~p~~~e~i~r~~   84 (90)
T 2vkl_A           72 -----DGKDLAILLLRLG   84 (90)
T ss_dssp             -----HHHHHHHHHHHHT
T ss_pred             -----CCHHHHHHHHHHH
Confidence                 3677777777643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d5csma_	256	a.130.1.2 (A:) Allosteric chorismate mutase {Baker	1e-131

>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 256

class: All alpha proteins
fold: Chorismate mutase II
superfamily: Chorismate mutase II
family: Allosteric chorismate mutase
domain: Allosteric chorismate mutase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  369 bits (948), Expect = e-131
 Identities = 96/251 (38%), Positives = 144/251 (57%), Gaps = 9/251 (3%)

Query: 7   LTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQSYASF--PGFSGSLLQYIVQQSEA 64
           L L  +RD L+R ED+IIF  IER+        Y+ ++     P F GS L + +   E 
Sbjct: 10  LNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEI 69

Query: 65  MQATAGRYENPEESPFFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLF 124
             +   R+E+P+E+PFFPDK+  SF+P   YPQ+L P    +N N  I  +Y  +++PL 
Sbjct: 70  AHSRIRRFESPDETPFFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLI 129

Query: 125 VAEG--DDGNYASTATSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALM 182
                 D  N+ S AT D+ CLQ+LSRRIH+GKFVAE KF+     Y   I++KD + +M
Sbjct: 130 SKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFVAEAKFQSDIPLYTKLIKSKDVEGIM 189

Query: 183 NLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKL 242
             +T   VE+ + +R+ KKA V G + +           ++ P  + ++Y + ++P TK 
Sbjct: 190 KNITNSAVEEKILERLTKKAEVYGVDPTERR-----IERRISPEYLVKIYKEIVIPITKE 244

Query: 243 VQVEYLLRRLD 253
           V+VEYLLRRL+
Sbjct: 245 VEVEYLLRRLE 255

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d5csma_	256	Allosteric chorismate mutase {Baker's yeast (Sacch	100.0
d2fp1a1	165	Secreted chorismate mutase {Mycobacterium tubercul	96.08
d1ecma_	91	Chorismate mutase domain of P-protein {Escherichia	95.03
d2h9da1	94	Salicylate biosynthesis protein PchB {Pseudomonas	94.26
d2gtvx1	93	Chorismate mutase-like protein MJ0246 {Methanococc	93.65
d2d8da1	80	Chorismate mutase domain of P-protein {Thermus the	91.43
d1wlza1	83	DJ-1-binding protein, DJBP {Human (Homo sapiens) [	82.9

>d5csma_ a.130.1.2 (A:) Allosteric chorismate mutase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Chorismate mutase II
superfamily: Chorismate mutase II
family: Allosteric chorismate mutase
domain: Allosteric chorismate mutase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-132  Score=891.08  Aligned_cols=247  Identities=39%  Similarity=0.710  Sum_probs=235.1

Q ss_pred             CCCCccChHHHHHHHHhhhhhhhHHHHhhhCCCCCccccCCC--CCCCCCCCchHHHHHHHhHhhhhhhccccCCCCCCC
Q 025389            2 ALAGDLTLDLVRDSLIRQEDTIIFCLIERAKHPLNAPAYDQS--YASFPGFSGSLLQYIVQQSEAMQATAGRYENPEESP   79 (253)
Q Consensus         2 ~~~~~l~Ld~IR~~LiR~EDTIIF~LIERaqf~~N~~~Y~~~--~~~~~~f~gS~le~~l~etE~~ha~~rRY~sPdE~P   79 (253)
                      -++++|||||||++||||||||||+||||||||+|+.+|++|  +++++||+|||+||||+|||++||++|||+||||||
T Consensus         5 ~~~~~L~L~~IR~~LiR~EDTIiF~LIERaqf~~N~~iY~~~~~~~~~~~~~~S~le~~l~etE~lhakvrRY~sPDE~P   84 (256)
T d5csma_           5 KPETVLNLQNIRDELVRMEDSIIFKFIERSHFATCPSVYEANHPGLEIPNFKGSFLDWALSNLEIAHSRIRRFESPDETP   84 (256)
T ss_dssp             SHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTSCCCGGGTSTTCTTSCCTTCCSCHHHHHHHHHHHHHHHTTGGGSTTCCC
T ss_pred             cHHHhcCHHHHHHHHHhhhhhhhhHHHHHhhcccCchhhcCCCCCCCCCCCcccHHHHHHHHHHHHHHHhcccCCCccCC
Confidence            457889999999999999999999999999999999999999  478999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCCCCCccccCCCCCCchhHHHHHHHHHhhhcccccC-C-CCCCchhHHHhhHHHHHHhHhhhhhchhh
Q 025389           80 FFPDKLPHSFVPPFKYPQVLHPAGTSINKNKIIWDMYFNQLLPLFVAE-G-DDGNYASTATSDLACLQALSRRIHYGKFV  157 (253)
Q Consensus        80 FfP~~Lp~pilpp~~yp~vLhp~a~~vNiN~~I~~~Y~~~llP~~~~~-g-dd~nygSta~~Di~cLQALSrRIHyGKFV  157 (253)
                      |||++||+|||||++||+||||+|++||||++||+||+++|||++|+. | |||||||||+||++|||||||||||||||
T Consensus        85 FfP~~Lp~pilpp~~yp~vLhp~a~~vNvN~~I~~~Y~~~ilP~i~~~~Gddd~NyGS~a~cDi~cLQALSRRIHyGKFV  164 (256)
T d5csma_          85 FFPDKIQKSFLPSINYPQILAPYAPEVNYNDKIKKVYIEKIIPLISKRDGDDKNNFGSVATRDIECLQSLSRRIHFGKFV  164 (256)
T ss_dssp             SCTTTCCCCSSCCCCCCCCSCTTGGGCCCHHHHHHHHHHHTHHHHSSSSSCCTTCHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred             CCcccccccCCCCCCCCcccCCccccccccHHHHHHHHHHhchHhhcCCCCCcccchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            999999999999999999999999999999999999999999999974 4 55999999999999999999999999999


Q ss_pred             hhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCccccChHHHHHhhccccc
Q 025389          158 AEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIM  237 (253)
Q Consensus       158 AEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~Ki~p~~V~~lY~~~VI  237 (253)
                      ||||||++|+.|++||+++|++|||++|||++||++||+||++||++||||++..     ++.+||||++|++||++|||
T Consensus       165 AEaKF~~~p~~y~~lI~a~D~~~lm~llT~~~VE~~vl~Rv~~KA~~yGqd~~~~-----~~~~KI~p~~v~~lY~~~vi  239 (256)
T d5csma_         165 AEAKFQSDIPLYTKLIKSKDVEGIMKNITNSAVEEKILERLTKKAEVYGVDPTER-----RIERRISPEYLVKIYKEIVI  239 (256)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCHHHHHHHTCCHHHHHHHHHHHHHHHHHTTSCCC-----------CCCHHHHHHHHHHTHH
T ss_pred             hHHHhhhCHHHHHHHHhccCHHHHHHHhhhHHHHHHHHHHHHHHHHHhCcCCCCc-----CCcCCcCHHHHHHHHHhcee
Confidence            9999999999999999999999999999999999999999999999999999743     66799999999999999999


Q ss_pred             ccchHHHHHHHHhhcC
Q 025389          238 PFTKLVQVEYLLRRLD  253 (253)
Q Consensus       238 PLTKeVEVeYLlrRLd  253 (253)
                      ||||+|||+|||||||
T Consensus       240 PLTK~VEVeYLlrRLd  255 (256)
T d5csma_         240 PITKEVEVEYLLRRLE  255 (256)
T ss_dssp             HHHHHHHHHHHHTCSC
T ss_pred             cCchhhHHHHHHHHhc
Confidence            9999999999999997

>d2fp1a1 a.130.1.4 (A:35-199) Secreted chorismate mutase {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: Chorismate mutase II
superfamily: Chorismate mutase II
family: Secreted chorismate mutase-like
domain: Secreted chorismate mutase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.08  E-value=0.0026  Score=51.68  Aligned_cols=76  Identities=17%  Similarity=0.214  Sum_probs=63.1

Q ss_pred             hHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCC
Q 025389          140 DLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQA  219 (253)
Q Consensus       140 Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~  219 (253)
                      ...++.+|++|..+-+-||+.|...+-                 -+.+++-|++|++++..+|+.+|             
T Consensus         5 l~eLv~ll~eRl~la~~Va~~K~~~~~-----------------pI~Dp~RE~~Vl~~~~~~A~~~g-------------   54 (165)
T d2fp1a1           5 LAELVDAAAERLEVADPVAAFKWRAQL-----------------PIEDSGRVEQQLAKLGEDARSQH-------------   54 (165)
T ss_dssp             THHHHHHHHHHHHTHHHHHHHHHHHTC-----------------CSCCHHHHHHHHHHHHHHHHHTT-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCC-----------------CCCCHHHHHHHHHHHHHHHHHcC-------------
Confidence            456789999999999999999976553                 36788899999999999999888             


Q ss_pred             ccccChHHHHHhhcccccccchHHHHHHHH
Q 025389          220 RFKVDPSVVSRLYGDWIMPFTKLVQVEYLL  249 (253)
Q Consensus       220 ~~Ki~p~~V~~lY~~~VIPLTKeVEVeYLl  249 (253)
                         +||+.+.++|++ +|=..|.||=.|+-
T Consensus        55 ---Ld~~~v~~~f~~-~I~aSk~iQ~~~~a   80 (165)
T d2fp1a1          55 ---IDPDYVTRVFDD-QIRATEAIEYSRFS   80 (165)
T ss_dssp             ---CCHHHHHHHHHH-HHHHHHHHHHHHHH
T ss_pred             ---CCHHHHHHHHHH-HHHHHHHHHHHHHH
Confidence               467788999965 58888888877653

>d1ecma_ a.130.1.1 (A:) Chorismate mutase domain of P-protein {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Chorismate mutase II
superfamily: Chorismate mutase II
family: Dimeric chorismate mutase
domain: Chorismate mutase domain of P-protein
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.012  Score=42.36  Aligned_cols=73  Identities=18%  Similarity=0.125  Sum_probs=57.7

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      .+|-.++..|++|.-+.+-||+.|.....                 -+.+++-|+.|++|+..+|...|           
T Consensus        12 ~iD~~i~~Ll~~R~~l~~~I~~~K~~~~~-----------------~i~d~~RE~~il~~~~~~~~~~~-----------   63 (91)
T d1ecma_          12 ALDEKLLALLAERRELAVEVGKAKLLSHR-----------------PVRDIDRERDLLERLITLGKAHH-----------   63 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CSCCHHHHHHHHHHHHHHHHHHT-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------------CcccHHHHHHHHHHHHHHhhcCC-----------
Confidence            58999999999999999999999865432                 46788899999999999998777           


Q ss_pred             CCccccChHHHHHhhcccccccchHHH
Q 025389          218 QARFKVDPSVVSRLYGDWIMPFTKLVQ  244 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~VIPLTKeVE  244 (253)
                           ++|+.+.++|+.. |=..+..|
T Consensus        64 -----l~~~~i~~i~~~i-i~~s~~~Q   84 (91)
T d1ecma_          64 -----LDAHYITRLFQLI-IEDSVLTQ   84 (91)
T ss_dssp             -----CCHHHHHHHHHHH-HHHHHHHH
T ss_pred             -----cCHHHHHHHHHHH-HHHHHHHH
Confidence                 3567778888754 44444444

>d2h9da1 a.130.1.1 (A:1-94) Salicylate biosynthesis protein PchB {Pseudomonas aeruginosa [TaxId: 287]}

class: All alpha proteins
fold: Chorismate mutase II
superfamily: Chorismate mutase II
family: Dimeric chorismate mutase
domain: Salicylate biosynthesis protein PchB
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.26  E-value=0.025  Score=41.29  Aligned_cols=64  Identities=25%  Similarity=0.286  Sum_probs=47.2

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      ..|-.++..|++|-.+.+-||+.|.... .                 +.+++-|+.|++|+..+|..+|           
T Consensus        19 ~ID~~i~~LL~~R~~l~~~i~~~K~~~~-~-----------------v~d~~Re~~vl~~~~~~a~~~g-----------   69 (94)
T d2h9da1          19 RIDLDIVQALGRRMDYVKAASRFKASEA-A-----------------IPAPERVAAMLPERARWAEENG-----------   69 (94)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTC----------------------------CHHHHHHHHHHHHHHHTT-----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHcC-C-----------------CCcHHHHHHHHHHHHHHHhhCC-----------
Confidence            5799999999999999999999995332 1                 2346779999999999998776           


Q ss_pred             CCccccChHHHHHhhccc
Q 025389          218 QARFKVDPSVVSRLYGDW  235 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~  235 (253)
                           ++|+.|.++|+..
T Consensus        70 -----l~~~~i~~i~~~i   82 (94)
T d2h9da1          70 -----LDAPFVEGLFAQI   82 (94)
T ss_dssp             -----SCHHHHHHHHHHH
T ss_pred             -----cCHHHHHHHHHHH
Confidence                 4677888888764

>d2gtvx1 a.130.1.3 (X:1-93) Chorismate mutase-like protein MJ0246 {Methanococcus jannaschii [TaxId: 2190]}

class: All alpha proteins
fold: Chorismate mutase II
superfamily: Chorismate mutase II
family: monomeric chorismate mutase
domain: Chorismate mutase-like protein MJ0246
species: Methanococcus jannaschii [TaxId: 2190]

Probab=93.65  E-value=0.022  Score=41.52  Aligned_cols=65  Identities=18%  Similarity=0.175  Sum_probs=51.8

Q ss_pred             HhhHHHH--------HHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccc
Q 025389          138 TSDLACL--------QALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEV  209 (253)
Q Consensus       138 ~~Di~cL--------QALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~  209 (253)
                      .+|-.++        ..|++|..+.+-||+.|-...                 .-+++++-|+.|++|+...|+.+|-  
T Consensus        14 ~iD~~ii~~~~~~~~~Ll~~R~~l~~~I~~~K~~~~-----------------~pi~d~~RE~~vl~~~~~~a~~~~l--   74 (93)
T d2gtvx1          14 EIDNKILKARWPWAEKLIAERNSLAKDVAEIKNQLG-----------------IPINDPEREKYIYDRIRKLCKEHNV--   74 (93)
T ss_dssp             HHHHHHHTSSSSSCCCCHHHHHHHHHHHHHHHHHHT-----------------SCSCCHHHHHHHHHHHHHHHHHHTS--
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcC-----------------CCCCCHHHHHHHHHHHHHHhhhCCc--
Confidence            4677787        469999999999999984433                 2477899999999999999998884  


Q ss_pred             cCCCCCCCCCccccChHHHHHhhccc
Q 025389          210 SLGNDGDKQARFKVDPSVVSRLYGDW  235 (253)
Q Consensus       210 ~~~~~~~~~~~~Ki~p~~V~~lY~~~  235 (253)
                                    +|+.+.++|+..
T Consensus        75 --------------~~~~i~~if~~i   86 (93)
T d2gtvx1          75 --------------DENIGIKIFQRL   86 (93)
T ss_dssp             --------------CSHHHHHHHHHH
T ss_pred             --------------CHHHHHHHHHHH
Confidence                          556777777653

>d2d8da1 a.130.1.1 (A:3-82) Chorismate mutase domain of P-protein {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Chorismate mutase II
superfamily: Chorismate mutase II
family: Dimeric chorismate mutase
domain: Chorismate mutase domain of P-protein
species: Thermus thermophilus [TaxId: 274]

Probab=91.43  E-value=0.11  Score=36.28  Aligned_cols=64  Identities=9%  Similarity=-0.018  Sum_probs=50.9

Q ss_pred             HhhHHHHHHhHhhhhhchhhhhhccccChhhhHHHHHhcCHHHHHHhhccHHHHHHHHHHHHHHHHHhcccccCCCCCCC
Q 025389          138 TSDLACLQALSRRIHYGKFVAEVKFRDAPHEYELAIRAKDRDALMNLLTYENVEQMVKKRVEKKAMVLGQEVSLGNDGDK  217 (253)
Q Consensus       138 ~~Di~cLQALSrRIHyGKFVAEaKF~~~p~~y~~lI~a~D~~~lm~lLT~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~  217 (253)
                      ..|-.++..|++|..+.+-||+.|-..                 ..-+.+++.|++|++|+..+++              
T Consensus        12 ~iD~~i~~Ll~~R~~~~~~i~~~K~~~-----------------~~~i~~~~RE~~v~~~~~~~~~--------------   60 (80)
T d2d8da1          12 RVNREILRLLSERGRLVQEIGRLQTEL-----------------GLPHYDPKREEEMLAYLTAENP--------------   60 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------TCCSCCHHHHHHHHHHHHHHCC--------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhc-----------------CCCCCchHHHHHHHHHHHHHhc--------------
Confidence            478899999999999999999999322                 2356788999999999976542              


Q ss_pred             CCccccChHHHHHhhccc
Q 025389          218 QARFKVDPSVVSRLYGDW  235 (253)
Q Consensus       218 ~~~~Ki~p~~V~~lY~~~  235 (253)
                         ..++|+.+..+|+..
T Consensus        61 ---~~l~~~~i~~i~r~I   75 (80)
T d2d8da1          61 ---GPFPDETIRKLFKEI   75 (80)
T ss_dssp             ---SSSCHHHHHHHHHHH
T ss_pred             ---CCCCHHHHHHHHHHH
Confidence               235888999999853

>d1wlza1 a.39.1.7 (A:229-311) DJ-1-binding protein, DJBP {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: EF Hand-like
superfamily: EF-hand
family: EF-hand modules in multidomain proteins
domain: DJ-1-binding protein, DJBP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.90  E-value=0.61  Score=31.59  Aligned_cols=64  Identities=11%  Similarity=0.084  Sum_probs=42.9

Q ss_pred             ccHHHHHHHHHHHHHHHHHhcccccCCCCCCCCCccccChHHHHHhhcccccccchHHHHHHHHhhcC
Q 025389          186 TYENVEQMVKKRVEKKAMVLGQEVSLGNDGDKQARFKVDPSVVSRLYGDWIMPFTKLVQVEYLLRRLD  253 (253)
Q Consensus       186 T~~~VE~~Vl~Rv~~KA~~yGqd~~~~~~~~~~~~~Ki~p~~V~~lY~~~VIPLTKeVEVeYLlrRLd  253 (253)
                      +.+++..++.+.+..+-...-+-+..-+   .+....|+.+-+.++.+.+-+|||. -|++.|++++|
T Consensus         3 ~~~ei~~~l~~~i~~~~~~l~~~F~~~D---~~~~G~i~~~ef~~~l~~~~~~l~~-~e~~~l~~~~d   66 (83)
T d1wlza1           3 ADRDILARLHKAVTSHYHAITQEFENFD---TMKTNTISREEFRAICNRRVQILTD-EQFDRLWNEMP   66 (83)
T ss_dssp             CCHHHHHHHHHHHHHTHHHHHHHHHHHC---TTCSSCBCHHHHHHHHHHHTCCCCH-HHHHHHHTTSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCceEChhHHHHHHHHhCCCCCh-hHHHHHhhccc
Confidence            3455555555555555444333332111   1345899999999999999999985 48999999886