Citrus Sinensis ID: 025426

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MERVHSLRMMSIFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSSA
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccccccccccccccccEEEccccccEEEEEccccccEEEccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHcccccccEEEccccEEEEcccccccccccccEEEccccccEEccccccccccccccEEccccEEEEcccHHHcccccccEEEccccccEEccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccccccHHcccccccccccEEEEEEccccccEEEEEEccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccc
Coil and Loop (DISEMBL)
MERVHSLRMMSIFLLLHCLIIISLFIAattattsstiTDRDALLALKAhithdptnflaknwntstpvcnwtgvacdvhshrvtvlnisslnlrgtipsqlgnlsslQSLNLScnrlsgsipstiFTIYTLKnvslgknklsgqiptnicsnlpflEFLSLSLNmfhggipstlsnctyLRTLSLAYndfsgavpreignltkLKVLYIGANrlqgeiprefgnlteleqfslptnNLQVMILNFLQFYSSSA
Flexible Loop (DISEMBL)
MERVHSLRMMSIFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSSA
Low Complexity Region (SEG)
MERVHSLRMMSIFLLLHCliiislfiaattattsstitDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPsqlgnlsslqslnlscnrlsGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSSA
Disordered region (IsUnstruct)
******LRMMSIFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFY****
Disordered Region (DISOPRED)
********MMSIFLLLHCLIIISLFIAATTAT**STITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSS*
Disordered Region (DISEMBL)
********MMSIFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSSA
Disordered Region (DISPRO)
*ERVHSLRMMSIFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF*****
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MERVHSLRMMSIFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q9M2Z1	1002	Leucine-rich repeat recep	yes	no	0.782	0.197	0.42	3e-34
C0LGT6	1031	LRR receptor-like serine/	no	no	0.877	0.215	0.343	6e-30
C0LGP4	1010	Probable LRR receptor-lik	no	no	0.778	0.195	0.394	4e-29
O49545	1003	Leucine-rich repeat recep	no	no	0.798	0.201	0.382	5e-29
Q9C7S5	1095	Tyrosine-sulfated glycope	no	no	0.901	0.208	0.349	2e-27
Q9ZVR7	1008	Phytosulfokine receptor 1	no	no	0.897	0.225	0.311	2e-26
Q9C9H7	847	Receptor-like protein 12	no	no	0.865	0.258	0.349	3e-26
P93194	1109	Receptor-like protein kin	N/A	no	0.833	0.190	0.358	3e-26
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.877	0.204	0.362	1e-25
C0LGK9	853	Probable LRR receptor-lik	no	no	0.758	0.225	0.362	1e-25

>sp|Q9M2Z1|BAME2_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM2 OS=Arabidopsis thaliana GN=BAM2 PE=1 SV=1

 Score =  145 bits (365), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 84/200 (42%), Positives = 116/200 (58%)

Query: 32  TTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSL 91
           T +  IT+  ALL+LK+  T D  + L  +WN ST  C+WTGV CDV    VT L++S L
Sbjct: 20  TVAKPITELHALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGL 79

Query: 92  NLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICS 151
           NL GT+ S + +L  LQ+L+L+ N++SG IP  I  +Y L++++L  N  +G  P  + S
Sbjct: 80  NLSGTLSSDVAHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSS 139

Query: 152 NLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGA 211
            L  L  L L  N   G +P +L+N T LR L L  N FSG +P   G    L+ L +  
Sbjct: 140 GLVNLRVLDLYNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSG 199

Query: 212 NRLQGEIPREFGNLTELEQF 231
           N L G+IP E GNLT L + 
Sbjct: 200 NELTGKIPPEIGNLTTLREL 219

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1

 Score =  131 bits (329), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/227 (34%), Positives = 121/227 (53%), Gaps = 5/227 (2%)

Query: 12  IFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNW 71
           +F  L  L+ + +F  A      S  TD  ALL  K+ ++ +    +  +WN S+P CNW
Sbjct: 8   VFNALTLLLQVCIFAQARF----SNETDMQALLEFKSQVSENNKREVLASWNHSSPFCNW 63

Query: 72  TGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTL 131
            GV C     RV  LN+    L G I   +GNLS L+ LNL+ N    +IP  +  ++ L
Sbjct: 64  IGVTCGRRRERVISLNLGGFKLTGVISPSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRL 123

Query: 132 KNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS 191
           + +++  N L G+IP+++ SN   L  + LS N    G+PS L + + L  L L+ N+ +
Sbjct: 124 QYLNMSYNLLEGRIPSSL-SNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLT 182

Query: 192 GAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           G  P  +GNLT L+ L    N+++GEIP E   LT++  F +  N+ 
Sbjct: 183 GNFPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSF 229

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1

 Score =  128 bits (322), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 80/203 (39%), Positives = 109/203 (53%), Gaps = 6/203 (2%)

Query: 38  TDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTI 97
           TDR ALL  K+ ++ D    L+ +WN S P+CNW GV C   + RVT L +  L L G I
Sbjct: 24  TDRQALLQFKSQVSEDKRVVLS-SWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVI 82

Query: 98  PSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNI--CSNLPF 155
              +GNLS L SL+L  N   G+IP  +  +  L+ + +G N L G IP  +  CS L  
Sbjct: 83  SPSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRLLN 142

Query: 156 LEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQ 215
           L   S   N   G +PS L + T L  L+L  N+  G +P  +GNLT L+ L +  N L+
Sbjct: 143 LRLDS---NRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLE 199

Query: 216 GEIPREFGNLTELEQFSLPTNNL 238
           GEIP +   LT++    L  NN 
Sbjct: 200 GEIPSDVAQLTQIWSLQLVANNF 222

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49545|BAME1_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1

 Score =  127 bits (320), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 78/204 (38%), Positives = 112/204 (54%), Gaps = 2/204 (0%)

Query: 30  TATTSSTITDRDALLALKAHITH--DPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLN 87
           T T S  I++  ALL+LK  +T   D  N    +W  ST  C W GV CDV    VT L+
Sbjct: 16  TFTASRPISEFRALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLD 75

Query: 88  ISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPT 147
           +S LNL GT+   + +L  LQ+L+L+ N +SG IP  I ++  L++++L  N  +G  P 
Sbjct: 76  LSGLNLSGTLSPDVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPD 135

Query: 148 NICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVL 207
            I S L  L  L +  N   G +P +++N T LR L L  N F+G +P   G+   ++ L
Sbjct: 136 EISSGLVNLRVLDVYNNNLTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYL 195

Query: 208 YIGANRLQGEIPREFGNLTELEQF 231
            +  N L G+IP E GNLT L + 
Sbjct: 196 AVSGNELVGKIPPEIGNLTTLREL 219

Necessary for male gametophyte development, as well as ovule specification and function. Involved in cell-cell communication process required during early anther development, and regulating cell division and differentiation to organize cell layers. Required for the development of high-ordered vascular strands within the leaf and a correlated control of leaf shape, size and symmetry. May regulate the CLV1-dependent CLV3-mediated signaling in meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C7S5|PSYR1_ARATH Tyrosine-sulfated glycopeptide receptor 1 OS=Arabidopsis thaliana GN=PSYR1 PE=2 SV=1

 Score =  122 bits (306), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/272 (34%), Positives = 136/272 (50%), Gaps = 44/272 (16%)

Query: 10  MSIFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVC 69
           M +F+LL+ L I   F+  + A  +  + DRD+LL    +++  P + L  +WN+S   C
Sbjct: 25  MVLFVLLYVLSISVFFLTVSEAVCN--LQDRDSLLWFSGNVSS-PVSPL--HWNSSIDCC 79

Query: 70  NWTGVACDVH-SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT- 127
           +W G++CD    +RVT + +SS  L G +PS + +L  L  L+LS NRLSG +P    + 
Sbjct: 80  SWEGISCDKSPENRVTSIILSSRGLSGNLPSSVLDLQRLSRLDLSHNRLSGPLPPGFLSA 139

Query: 128 IYTLKNVSLGKNKLSGQIP-----------------TNICSNLPFLEFLSLSL------- 163
           +  L  + L  N   G++P                  ++ SNL   E LS S+       
Sbjct: 140 LDQLLVLDLSYNSFKGELPLQQSFGNGSNGIFPIQTVDLSSNLLEGEILSSSVFLQGAFN 199

Query: 164 --------NMFHGGIPSTLSNCT---YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGAN 212
                   N F G IPS +  CT    L  L  +YNDFSG + +E+   ++L VL  G N
Sbjct: 200 LTSFNVSNNSFTGSIPSFM--CTASPQLTKLDFSYNDFSGDLSQELSRCSRLSVLRAGFN 257

Query: 213 RLQGEIPREFGNLTELEQFSLPTNNLQVMILN 244
            L GEIP+E  NL ELEQ  LP N L   I N
Sbjct: 258 NLSGEIPKEIYNLPELEQLFLPVNRLSGKIDN 289

Tyrosine-sulfated glycopeptide receptor with a serine/threonine-protein kinase activity. Regulates, in response to tyrosine-sulfated glycopeptide binding, a signaling cascade involved in cellular proliferation and plant growth. Not involved in PSK perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9ZVR7|PSKR1_ARATH Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4

 Score =  119 bits (297), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 131/260 (50%), Gaps = 33/260 (12%)

Query: 3   RVHSLRMMSIFLLLHCLIIISLFIAATTATTSSTIT-DRDALLALKAHITHDPTNFLAKN 61
           RVH   ++ IFL      ++  F ++ + TTS     D +AL    AH+   P  ++  N
Sbjct: 2   RVHRFCVIVIFLTE----LLCFFYSSESQTTSRCHPHDLEALRDFIAHLEPKPDGWI--N 55

Query: 62  WNTSTPVCNWTGVACDVHS-------------------------HRVTVLNISSLNLRGT 96
            ++ST  CNWTG+ C+ ++                           + VLN+S   ++ +
Sbjct: 56  SSSSTDCCNWTGITCNSNNTGRVIRLELGNKKLSGKLSESLGKLDEIRVLNLSRNFIKDS 115

Query: 97  IPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL 156
           IP  + NL +LQ+L+LS N LSG IP++I  +  L++  L  NK +G +P++IC N   +
Sbjct: 116 IPLSIFNLKNLQTLDLSSNDLSGGIPTSI-NLPALQSFDLSSNKFNGSLPSHICHNSTQI 174

Query: 157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG 216
             + L++N F G   S    C  L  L L  ND +G +P ++ +L +L +L I  NRL G
Sbjct: 175 RVVKLAVNYFAGNFTSGFGKCVLLEHLCLGMNDLTGNIPEDLFHLKRLNLLGIQENRLSG 234

Query: 217 EIPREFGNLTELEQFSLPTN 236
            + RE  NL+ L +  +  N
Sbjct: 235 SLSREIRNLSSLVRLDVSWN 254

Phytosulfokine receptor with a serine/threonine-protein kinase activity. Regulates, in response to phytosulfokine binding, a signaling cascade involved in plant cell differentiation, organogenesis, somatic embryogenesis, cellular proliferation and plant growth. Not involved in PSY perception.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 88/252 (34%), Positives = 125/252 (49%), Gaps = 33/252 (13%)

Query: 19  LIIISLFIAATTATTSSTITD--RDALLALKAHITHDPT----NFLAKNWNTSTPVCNWT 72
           +I +SL + +  +++     D  RDALL  +     + +    N     WN ST  C W 
Sbjct: 16  IIFLSLLVHSLASSSPHFCRDDQRDALLEFRGEFPINASWHIMNQWRGPWNKSTDCCLWN 75

Query: 73  GVACDVHSHRVTVLNI------------SSL--------------NLRGTIPSQLGNLSS 106
           GV C+  S +V  L+I            SSL              NL G IPS LGNLS 
Sbjct: 76  GVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLTNCNLYGEIPSSLGNLSH 135

Query: 107 LQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMF 166
           L  +NL  N+  G IP++I  +  L+++ L  N L+G+IP+++  NL  L  L L  N  
Sbjct: 136 LTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTGEIPSSL-GNLSRLVNLELFSNRL 194

Query: 167 HGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLT 226
            G IP ++ +   LR LSLA N+  G +P  +GNL+ L  L +  N+L GE+P   GNL 
Sbjct: 195 VGKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLVGEVPASIGNLI 254

Query: 227 ELEQFSLPTNNL 238
           EL   S   N+L
Sbjct: 255 ELRVMSFENNSL 266

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.

Arabidopsis thaliana (taxid: 3702)

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  118 bits (296), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 87/243 (35%), Positives = 128/243 (52%), Gaps = 32/243 (13%)

Query: 24  LFIAATTATTSSTITDRD--ALLALKAHITHDPTNFLAKNWNTS--TPVCNWTGVACDVH 79
           LF+ +T++  ++   + D  ALL+L  H T  P++ + ++WN S  TP C+W GV CD  
Sbjct: 10  LFLCSTSSIYAAFALNSDGAALLSLTRHWTSIPSD-ITQSWNASDSTP-CSWLGVECD-R 66

Query: 80  SHRVTVLNISSLNLRG------------------------TIPSQLGNLSSLQSLNLSCN 115
              V  LN+SS  + G                        +IPSQLGN S L+ ++LS N
Sbjct: 67  RQFVDTLNLSSYGISGEFGPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSN 126

Query: 116 RLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLS 175
             +G+IP T+  +  L+N+SL  N L G  P ++ S +P LE +  + N  +G IPS + 
Sbjct: 127 SFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLS-IPHLETVYFTGNGLNGSIPSNIG 185

Query: 176 NCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPT 235
           N + L TL L  N FSG VP  +GN+T L+ LY+  N L G +P    NL  L    +  
Sbjct: 186 NMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPVTLNNLENLVYLDVRN 245

Query: 236 NNL 238
           N+L
Sbjct: 246 NSL 248

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 83/229 (36%), Positives = 124/229 (54%), Gaps = 7/229 (3%)

Query: 15  LLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNW--NTS-TPVCN- 70
           LL   ++ SLF+     + SS  +D  ALL+L  H    P   +A  W  NTS T  CN 
Sbjct: 6   LLEITLLCSLFVYFRIDSVSSLNSDGLALLSLLKHFDKVPLE-VASTWKENTSETTPCNN 64

Query: 71  -WTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIY 129
            W GV CD+  + V  LN+S+  L G + S++G L SL +L+LS N  SG +PST+    
Sbjct: 65  NWFGVICDLSGNVVETLNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGLLPSTLGNCT 124

Query: 130 TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYND 189
           +L+ + L  N  SG++P +I  +L  L FL L  N   G IP+++     L  L ++YN+
Sbjct: 125 SLEYLDLSNNDFSGEVP-DIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNN 183

Query: 190 FSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
            SG +P  +GN +KL+ L +  N+L G +P     L  L +  +  N+L
Sbjct: 184 LSGTIPELLGNCSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSL 232

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGK9|Y2242_ARATH Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 71/196 (36%), Positives = 111/196 (56%), Gaps = 4/196 (2%)

Query: 59  AKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQ-LGNLSSLQSLNLSCNRL 117
           ++ +N S P C+W G+ CD  +  V +L  S ++L G IP   +G LS LQSL+LS N++
Sbjct: 45  SQAYNFSAPFCSWQGLFCDSKNEHVIMLIASGMSLSGQIPDNTIGKLSKLQSLDLSNNKI 104

Query: 118 SGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNC 177
           S ++PS  +++ TLKN++L  NK+SG   +N+  N   LE L +S N F G IP  + + 
Sbjct: 105 S-ALPSDFWSLNTLKNLNLSFNKISGSFSSNV-GNFGQLELLDISYNNFSGAIPEAVDSL 162

Query: 178 TYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGN-LTELEQFSLPTN 236
             LR L L +N F  ++PR +     L  + + +N+L+G +P  FG+   +LE  SL  N
Sbjct: 163 VSLRVLKLDHNGFQMSIPRGLLGCQSLVSIDLSSNQLEGSLPDGFGSAFPKLETLSLAGN 222

Query: 237 NLQVMILNFLQFYSSS 252
            +     +F    S S
Sbjct: 223 KIHGRDTDFADMKSIS 238

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
359483198	1087	PREDICTED: probable LRR receptor-like se	0.897	0.208	0.446	3e-41
302143442	999	unnamed protein product [Vitis vinifera]	0.881	0.223	0.439	3e-41
224139658	1019	predicted protein [Populus trichocarpa]	0.810	0.201	0.401	5e-41
359483685	1046	PREDICTED: LRR receptor-like serine/thre	0.806	0.195	0.439	6e-41
359485176	1160	PREDICTED: probable LRR receptor-like se	0.877	0.191	0.36	2e-40
356510768	1214	PREDICTED: probable LRR receptor-like se	0.916	0.191	0.399	3e-40
147853795	1420	hypothetical protein VITISV_005816 [Viti	0.810	0.144	0.417	7e-40
255578886	1043	serine-threonine protein kinase, plant-t	0.909	0.220	0.359	1e-39
298204751	1979	unnamed protein product [Vitis vinifera]	0.885	0.113	0.421	1e-38
296086336	628	unnamed protein product [Vitis vinifera]	0.853	0.343	0.394	2e-38

>gi|359483198|ref|XP_002271405.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 104/233 (44%), Positives = 142/233 (60%), Gaps = 6/233 (2%)

Query: 9   MMSIFLLLHCLIIISLFI---AATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTS 65
           M  +FLL     IIS+FI   +A  A + S  TD+ +LLALKAHIT DP + LA NW+T 
Sbjct: 1   MEGVFLLSST--IISVFIVQFSACVAMSLSNFTDQSSLLALKAHITLDPHHVLAGNWSTK 58

Query: 66  TPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTI 125
           T  C W GV+C+    RV  L++S+L LRGTIP  LGNLS L SL+LS N   G +P  +
Sbjct: 59  TSFCEWIGVSCNAQQQRVIALDLSNLGLRGTIPPDLGNLSFLVSLDLSSNNFHGPVPVEV 118

Query: 126 FTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSL 185
             + +L +++L  N LSGQIP +   NL  L+ L L  N F G IP ++ N + L TL L
Sbjct: 119 GQLTSLLSMNLQYNLLSGQIPPSF-GNLNRLQSLFLGNNSFTGTIPPSIGNMSMLETLGL 177

Query: 186 AYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
             N   G +P EIG L+ +K+L I +N+L G IP    N++ L++ +L  N+L
Sbjct: 178 GGNHLQGNIPEEIGKLSTMKILDIQSNQLVGAIPSAIFNISSLQEIALTYNSL 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143442|emb|CBI22003.3| unnamed protein product [Vitis vinifera]

 Score =  174 bits (441), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 102/232 (43%), Positives = 143/232 (61%), Gaps = 9/232 (3%)

Query: 10  MSIFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVC 69
           +S+F L+H  +        T    S  + D  AL+ALKAHIT+D  + LA NW+T +P C
Sbjct: 145 VSVFALVHYWVA-----CFTPMVFSINLVDDFALVALKAHITYDSQSILATNWSTKSPHC 199

Query: 70  NWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSS-LQSLNLSCNRLSGSIPSTIFTI 128
            W G++C+    RV+V+N+S++ L GTI  Q+GNLS  L+ LNLS N LSG IP+ +   
Sbjct: 200 CWYGISCNAAQQRVSVINLSNMGLEGTIAPQVGNLSFLLKELNLSSNHLSGQIPNGLGQC 259

Query: 129 YTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS--LNMFHGGIPSTLSNCTYLRTLSLA 186
             L+ +SL  N+ +G IP  I   L  L  LSL   +N   G IPSTLS+C  L+ LSL+
Sbjct: 260 IKLQVISLSYNEFTGSIPRGI-GELVELRRLSLQNNINNLKGEIPSTLSHCRELQKLSLS 318

Query: 187 YNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           +N F+G +P  IG+L+ L+ LY+G N+L G IP+E GNL  L   SL ++ L
Sbjct: 319 FNQFTGRIPEAIGSLSNLEGLYLGYNKLAGGIPKEMGNLRNLNILSLTSSGL 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224139658|ref|XP_002323215.1| predicted protein [Populus trichocarpa] gi|222867845|gb|EEF04976.1| predicted protein [Populus trichocarpa]

 Score =  173 bits (439), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 102/254 (40%), Positives = 130/254 (51%), Gaps = 49/254 (19%)

Query: 34  SSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNL 93
           +S  TD+ ALLA K HIT DP N L  +W++ T  CNW GV+C +   RVT L++SS+ L
Sbjct: 26  TSNFTDQSALLAFKDHITFDPQNMLTHSWSSKTSFCNWMGVSCSLRRQRVTALDLSSMGL 85

Query: 94  RGTIPSQLGNLSSLQ--------------------------------------------- 108
            GTIP QLGNLS LQ                                             
Sbjct: 86  LGTIPPQLGNLSFLQYLILYNNSFHGDLPSEIGNLRRLQVMDIGSNKLSLVIVPESFGNL 145

Query: 109 ----SLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLN 164
                L    N L+G+IPSTIF I +LK + L  N L G +P N+C +LP LE L LS N
Sbjct: 146 HRLEELRFDGNNLTGTIPSTIFNISSLKVLDLMFNGLFGSLPKNMCDHLPRLEMLLLSSN 205

Query: 165 MFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGN 224
              G IPS L  C  L+ L L YN+F+G +P E+G L  L+VL +G N L G++PR   N
Sbjct: 206 QLSGQIPSDLFKCRELQLLWLPYNNFTGVIPEELGFLPMLEVLNLGVNMLSGDLPRSIFN 265

Query: 225 LTELEQFSLPTNNL 238
           +T L    +  NNL
Sbjct: 266 MTSLRTMQICCNNL 279

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359483685|ref|XP_002263372.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like [Vitis vinifera]

 Score =  173 bits (439), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 90/205 (43%), Positives = 132/205 (64%), Gaps = 1/205 (0%)

Query: 34  SSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNL 93
           S  + D  AL+ALKAHIT+D    LA NW+T +  CNW G++C+    RV+ +N+S++ L
Sbjct: 4   SINLVDEFALIALKAHITYDSQGILATNWSTKSSYCNWYGISCNAPQQRVSAINLSNMGL 63

Query: 94  RGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNL 153
            GTI  Q+GNLS L SL+L+ N  +GSIP+ I  +  L+ +SL  N L+G+IP+N+ S+ 
Sbjct: 64  EGTIAPQVGNLSFLVSLDLTYNDFTGSIPNGIGNLVELQRLSLRNNSLTGEIPSNL-SHC 122

Query: 154 PFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANR 213
             L  LSLS+N F GGIP  + + + L  L L YN  +G +PREIGNL+ L +L +G+N 
Sbjct: 123 RELRGLSLSINQFTGGIPQAIGSLSNLEELYLNYNKLTGGIPREIGNLSNLNILQLGSNG 182

Query: 214 LQGEIPREFGNLTELEQFSLPTNNL 238
           + G IP E   ++ L++     N+L
Sbjct: 183 ISGPIPAEIFTVSSLQRIIFANNSL 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485176|ref|XP_002280075.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera]

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/300 (36%), Positives = 155/300 (51%), Gaps = 78/300 (26%)

Query: 11  SIFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCN 70
           S+FL+ HC +    F++ T +   + + D  +LLA+KAHIT D  + LA NW+T+T  CN
Sbjct: 12  SVFLM-HCWVA---FLSPTASL--ANLADELSLLAMKAHITSDSKDVLATNWSTTTSYCN 65

Query: 71  WTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLS--------------C-- 114
           W GV+CD    RV  L++S+++L GTI  Q+GNLS L +L+LS              C  
Sbjct: 66  WFGVSCDAARQRVIALDLSNMDLEGTIAPQVGNLSFLVTLDLSNNSFHASIPNEIAKCRE 125

Query: 115 --------NRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNI----------------- 149
                   NRL+GSIP  I  +  L+ + LG N+L+G+IP  I                 
Sbjct: 126 LRQLYLFNNRLTGSIPQAIGNLSKLEQLYLGGNQLTGEIPREISHLLSLKILSFRSNNLT 185

Query: 150 -------------------------------CSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
                                          C +LP L  L LS N   G IP++L  C 
Sbjct: 186 ASIPSAIFNISSLQYIGLTYNSLSGTLPMDMCYSLPKLRGLYLSGNQLSGKIPTSLGKCG 245

Query: 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
            L  +SL++N+F G++PR IG+L+ L+VLY+G+N L+GEIP+   NL+ L  F L +NNL
Sbjct: 246 RLEEISLSFNEFMGSIPRGIGSLSVLEVLYLGSNNLEGEIPQTLFNLSSLRNFELGSNNL 305

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356510768|ref|XP_003524106.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Glycine max]

 Score =  171 bits (433), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 95/238 (39%), Positives = 136/238 (57%), Gaps = 6/238 (2%)

Query: 1   MERVHSLRMMSIFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAK 60
           ME++             CL+ ++L ++ T  TT     D+ ALLALK+ IT DP NFL  
Sbjct: 1   MEKLLCFSFRVFTFSFQCLMALTLALSGTNFTT-----DKLALLALKSSITRDPHNFLTH 55

Query: 61  NWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGS 120
           NW+ +T VCNW GV CD +  RV  LN+  ++L G +PS LGNL+ L  L+L  N+  G 
Sbjct: 56  NWSATTSVCNWVGVTCDAYHGRVRTLNLGDMSLSGIMPSHLGNLTFLNKLDLGGNKFHGQ 115

Query: 121 IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL 180
           +P  +  ++ LK ++L  N+ SG +   I   L  L +L+L  N F G IP ++SN T L
Sbjct: 116 LPEELVQLHRLKFLNLSYNEFSGNVSEWI-GGLSTLRYLNLGNNDFGGFIPKSISNLTML 174

Query: 181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
             +    N   G +P E+G +T+L+VL + +NRL G IPR   NL+ LE  SL  N+L
Sbjct: 175 EIMDWGNNFIQGTIPPEVGKMTQLRVLSMYSNRLSGTIPRTVSNLSSLEGISLSYNSL 232

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147853795|emb|CAN81714.1| hypothetical protein VITISV_005816 [Vitis vinifera]

 Score =  169 bits (429), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 93/223 (41%), Positives = 134/223 (60%), Gaps = 18/223 (8%)

Query: 34  SSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNL 93
           S  + D  AL+ALKAHIT+D    LA NW+T +  C+W G++C+    RV+ +N+S++ L
Sbjct: 4   SINLVDEVALIALKAHITYDSQGILATNWSTKSSYCSWYGISCNAPQQRVSAINLSNMGL 63

Query: 94  RGTIPSQLGNLSSLQSLNLSCNRLS------------------GSIPSTIFTIYTLKNVS 135
           +GTI  Q+GNLS L SL+LS N                     GSIP+TIF I +L  +S
Sbjct: 64  QGTIVPQVGNLSFLVSLDLSNNYFHASLPKDIXKILLXFVYFIGSIPATIFNISSLLKIS 123

Query: 136 LGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP 195
           L  N LSG +P ++C+  P L+ L+L+ N   G  P+ L  CT L+ +SL+YN+F+G++P
Sbjct: 124 LSYNSLSGSLPMDMCNTNPKLKELNLTSNHLSGKXPTGLGQCTKLQGISLSYNEFTGSIP 183

Query: 196 REIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           R IGNL +L+ L +  N L GEIP+    ++ L    L  NNL
Sbjct: 184 RAIGNLVELQSLSLXNNSLTGEIPQSLFKISSLRFLRLGENNL 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255578886|ref|XP_002530297.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223530195|gb|EEF32104.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis]

 Score =  169 bits (427), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 101/281 (35%), Positives = 144/281 (51%), Gaps = 51/281 (18%)

Query: 12  IFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNW 71
           + L +  +++ S F++     T+   +D+DALLALK  I  DP N LA NW+ +T VC W
Sbjct: 8   LILCMKIILLYSFFVSIADGVTN-IASDQDALLALKVRIIRDPNNLLAANWSITTSVCTW 66

Query: 72  TGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSL------------------------ 107
            GV C     RVT L++S + L GTIP  LGNLS L                        
Sbjct: 67  VGVTCGARHGRVTALDLSDMGLTGTIPPHLGNLSFLAFISFYNNRFHGSLPDELSKLRRI 126

Query: 108 QSLNLSCNRLSGSIPSTIFTIYTLKNVSL--------------------------GKNKL 141
           ++  +S N  SG IPS I +   L+ +SL                          G N L
Sbjct: 127 KAFGMSTNYFSGEIPSWIGSFTQLQRLSLSSNKFTGLLPAILANNTISSLWLLDFGTNNL 186

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
           +G++P NI ++L  L  L L+ N+F+G IPSTL  C  L+ L+L++N F G++ ++IGNL
Sbjct: 187 TGRLPPNIFTHLANLRALYLNSNLFNGPIPSTLMACQQLKLLALSFNHFEGSIHKDIGNL 246

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI 242
           T L+ LY+G N   G IP E G+L  LE+  L  N L  ++
Sbjct: 247 TMLQELYLGGNNFSGTIPDEIGDLAHLEEIILNVNGLSGLV 287

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|298204751|emb|CBI25249.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (418), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 97/230 (42%), Positives = 133/230 (57%), Gaps = 6/230 (2%)

Query: 10  MSIFLLLHCLIIISLFI---AATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTST 66
           + +FLL     IIS+FI   +A  A + S  TD+ +LLALKAHIT DP + LA NW+T T
Sbjct: 477 LGVFLLSST--IISVFIVQFSACVAMSLSNFTDQSSLLALKAHITLDPHHVLAGNWSTKT 534

Query: 67  PVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIF 126
             C W GV+C+    RV  L++S+L LRGTIP  LGNLS L SL+LS N   G IP +  
Sbjct: 535 SFCEWIGVSCNAQQQRVIALDLSNLGLRGTIPPDLGNLSFLVSLDLSSNNFHGPIPPSFG 594

Query: 127 TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLA 186
            +  L+++ LG N  +G IP +I  N+  LE L +  N   G IPS + N + L+ ++L 
Sbjct: 595 NLNRLQSLFLGNNSFTGTIPPSI-GNMSMLETLDIQSNQLVGAIPSAIFNISSLQEIALT 653

Query: 187 YNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
           YN  SG +P EI  L  L+ LY+ +N     IP     ++ L+   L  N
Sbjct: 654 YNSLSGTIPEEISFLPSLEYLYLRSNSFTSPIPSAIFKISTLKAIDLGKN 703

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296086336|emb|CBI31777.3| unnamed protein product [Vitis vinifera]

 Score =  165 bits (417), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 101/256 (39%), Positives = 149/256 (58%), Gaps = 40/256 (15%)

Query: 11  SIFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCN 70
           S+FL+ HC +    F++ T +   + + D  +LLA+KAHIT D  + LA NW+T+T  CN
Sbjct: 12  SVFLM-HCWVA---FLSPTASL--ANLADELSLLAMKAHITSDSKDVLATNWSTTTSYCN 65

Query: 71  WTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLS--------------C-- 114
           W GV+CD    RV  L++S+++L GTI  Q+GNLS L +L+LS              C  
Sbjct: 66  WFGVSCDAARQRVIALDLSNMDLEGTIAPQVGNLSFLVTLDLSNNSFHASIPNEIAKCRE 125

Query: 115 --------NRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMF 166
                   NRL+GSIP  I  +  L+ + LG N+L+G+IP  I S+L  L+ LS   N  
Sbjct: 126 LRQLYLFNNRLTGSIPQAIGNLSKLEQLYLGGNQLTGEIPREI-SHLLSLKILSFRSNNL 184

Query: 167 HGGIPSTLSN---------CTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGE 217
              IPS + N         C  L  +SL++N+F G++PR IG+L+ L+VLY+G+N L+GE
Sbjct: 185 TASIPSAIFNISSLQYIGKCGRLEEISLSFNEFMGSIPRGIGSLSVLEVLYLGSNNLEGE 244

Query: 218 IPREFGNLTELEQFSL 233
           IP+   NL+ L +  +
Sbjct: 245 IPQTLFNLSSLPRLQV 260

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2097310	1002	BAM2 "BARELY ANY MERISTEM 2" [	0.747	0.188	0.386	4.5e-28
TAIR|locus:2197563	477	AT1G33590 [Arabidopsis thalian	0.770	0.408	0.360	7.4e-25
TAIR|locus:2008793	719	AT1G67510 [Arabidopsis thalian	0.814	0.286	0.344	8.2e-25
TAIR|locus:2169965	1003	BAM1 "BARELY ANY MERISTEM 1" [	0.747	0.188	0.350	5.2e-24
TAIR|locus:2075631	1009	AT3G47090 [Arabidopsis thalian	0.778	0.195	0.346	8.7e-24
TAIR|locus:2079142	1010	AT3G47570 [Arabidopsis thalian	0.770	0.193	0.353	1.1e-23
TAIR|locus:2079157	1011	AT3G47580 [Arabidopsis thalian	0.774	0.193	0.333	2.3e-23
TAIR|locus:2149922	1031	EFR "EF-TU receptor" [Arabidop	0.782	0.192	0.311	2.4e-23
TAIR|locus:2033000	702	AT1G25320 [Arabidopsis thalian	0.727	0.262	0.356	4.1e-23
TAIR|locus:2182870	1192	EMS1 "EXCESS MICROSPOROCYTES1"	0.743	0.157	0.345	1e-22

TAIR|locus:2097310 BAM2 "BARELY ANY MERISTEM 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 325 (119.5 bits), Expect = 4.5e-28, P = 4.5e-28
 Identities = 73/189 (38%), Positives = 96/189 (50%)

Query:    42 ALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPXXX 101
             ALL+LK+  T D  + L  +WN ST  C+WTGV CDV    VT L++S LNL GT+    
Sbjct:    30 ALLSLKSSFTIDEHSPLLTSWNLSTTFCSWTGVTCDVSLRHVTSLDLSGLNLSGTLSSDV 89

Query:   102 XXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161
                              G IP  I  +Y L++++L  N  +G  P  + S L  L  L L
Sbjct:    90 AHLPLLQNLSLAANQISGPIPPQISNLYELRHLNLSNNVFNGSFPDELSSGLVNLRVLDL 149

Query:   162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE 221
               N   G +P +L+N T LR L L  N FSG +P   G    L+ L +  N L G+IP E
Sbjct:   150 YNNNLTGDLPVSLTNLTQLRHLHLGGNYFSGKIPATYGTWPVLEYLAVSGNELTGKIPPE 209

Query:   222 FGNLTELEQ 230
              GNLT L +
Sbjct:   210 IGNLTTLRE 218

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007389 "pattern specification process" evidence=RCA

GO:0008361 "regulation of cell size" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0009926 "auxin polar transport" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010015 "root morphogenesis" evidence=RCA

GO:0010162 "seed dormancy process" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0040007 "growth" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2197563 AT1G33590 [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 7.4e-25, P = 7.4e-25
 Identities = 74/205 (36%), Positives = 101/205 (49%)

Query:    39 DRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLN------ 92
             D   LLA KA IT DP+  L+ +W   T  C+W GV C + + RV+ L+++         
Sbjct:    31 DEAGLLAFKAGITRDPSGILS-SWKKGTACCSWNGVTC-LTTDRVSALSVAGQADVAGSF 88

Query:    93 LRGTI-PXXXXXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICS 151
             L GT+ P                    GS P  +F +  LK V +  N+LSG +P NI +
Sbjct:    89 LSGTLSPSLAKLKHLDGIYFTDLKNITGSFPQFLFQLPNLKYVYIENNRLSGTLPANIGA 148

Query:   152 NLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGA 211
              L  LE  SL  N F G IPS++SN T L  L L  N  +G +P  + NL  +  L +G 
Sbjct:   149 -LSQLEAFSLEGNRFTGPIPSSISNLTLLTQLKLGNNLLTGTIPLGVANLKLMSYLNLGG 207

Query:   212 NRLQGEIPREFGNLTELEQFSLPTN 236
             NRL G IP  F ++ EL   +L  N
Sbjct:   208 NRLTGTIPDIFKSMPELRSLTLSRN 232

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0005618 "cell wall" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0005829 "cytosol" evidence=RCA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2008793 AT1G67510 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.2e-25, P = 8.2e-25
 Identities = 74/215 (34%), Positives = 113/215 (52%)

Query:    39 DRDALLALKAHITHDPTNFLAKNWNTS-TPVCNWTGVAC----DVHSHRVTVLNISSLNL 93
             D  ALL+LK+ + H  ++  + +WN + T  C+W+G++C    D  + RV  ++++  +L
Sbjct:    26 DGIALLSLKSAVDHSSSSAFS-DWNDNDTDPCHWSGISCMNISDSSTSRVVGISLAGKHL 84

Query:    94 RGTIPXXXXXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNL 153
             RG IP                    GSIP+ +F   +L ++ L  N LSG +P +IC  L
Sbjct:    85 RGYIPSELGSLIYLRRLNLHNNELYGSIPTQLFNATSLHSIFLYGNNLSGTLPPSICK-L 143

Query:   154 PFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG-NLTKLKVLYIGAN 212
             P L+ L LS+N   G +   L+ C  L+ L L+ N+FSG +P +I   LT L  L + AN
Sbjct:   144 PKLQNLDLSMNSLSGTLSPDLNKCKQLQRLILSANNFSGEIPGDIWPELTNLAQLDLSAN 203

Query:   213 RLQGEIPREFGNLTELE-QFSLPTNNLQVMILNFL 246
                GEIP++ G L  L    +L  N+L   I N L
Sbjct:   204 EFSGEIPKDIGELKSLSGTLNLSFNHLSGQIPNSL 238

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2169965 BAM1 "BARELY ANY MERISTEM 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 5.2e-24, P = 5.2e-24
 Identities = 67/191 (35%), Positives = 93/191 (48%)

Query:    42 ALLALKAHITH--DPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPX 99
             ALL+LK  +T   D  N    +W  ST  C W GV CDV    VT L++S LNL GT+  
Sbjct:    28 ALLSLKTSLTGAGDDKNSPLSSWKVSTSFCTWIGVTCDVSRRHVTSLDLSGLNLSGTLSP 87

Query:   100 XXXXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159
                                G IP  I ++  L++++L  N  +G  P  I S L  L  L
Sbjct:    88 DVSHLRLLQNLSLAENLISGPIPPEISSLSGLRHLNLSNNVFNGSFPDEISSGLVNLRVL 147

Query:   160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP 219
              +  N   G +P +++N T LR L L  N F+G +P   G+   ++ L +  N L G+IP
Sbjct:   148 DVYNNNLTGDLPVSVTNLTQLRHLHLGGNYFAGKIPPSYGSWPVIEYLAVSGNELVGKIP 207

Query:   220 REFGNLTELEQ 230
              E GNLT L +
Sbjct:   208 PEIGNLTTLRE 218

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010075 "regulation of meristem growth" evidence=IGI;RCA

GO:0048229 "gametophyte development" evidence=IGI

GO:0048437 "floral organ development" evidence=IGI

GO:0010480 "microsporocyte differentiation" evidence=IGI

GO:0048653 "anther development" evidence=IGI;RCA

GO:0009934 "regulation of meristem structural organization" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0033612 "receptor serine/threonine kinase binding" evidence=IPI

GO:0043621 "protein self-association" evidence=IDA

GO:0000271 "polysaccharide biosynthetic process" evidence=RCA

GO:0007020 "microtubule nucleation" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=RCA

GO:0009932 "cell tip growth" evidence=RCA

GO:0010817 "regulation of hormone levels" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2075631 AT3G47090 [Arabidopsis thaliana (taxid:3702)]

 Score = 285 (105.4 bits), Expect = 8.7e-24, P = 8.7e-24
 Identities = 69/199 (34%), Positives = 99/199 (49%)

Query:    39 DRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIP 98
             DR ALL +K+ ++    + L+  WN S P+C+W  V C     RVT L++  L L G I 
Sbjct:    25 DRQALLEIKSQVSESKRDALSA-WNNSFPLCSWKWVRCGRKHKRVTRLDLGGLQLGGVIS 83

Query:    99 XXXXXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158
                                 G+IP  +  ++ LK +++G N L G+IP ++ SN   L +
Sbjct:    84 PSIGNLSFLIYLDLSNNSFGGTIPQEMGNLFRLKYLAVGFNYLEGEIPASL-SNCSRLLY 142

Query:   159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI 218
             L L  N    G+PS L +   L  L L  ND  G  P  I NLT L VL +G N L+GEI
Sbjct:   143 LDLFSNNLGDGVPSELGSLRKLLYLYLGLNDLKGKFPVFIRNLTSLIVLNLGYNHLEGEI 202

Query:   219 PREFGNLTELEQFSLPTNN 237
             P +   L+++   +L  NN
Sbjct:   203 PDDIAMLSQMVSLTLTMNN 221

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 71/201 (35%), Positives = 98/201 (48%)

Query:    39 DRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIP 98
             DR ALL  K+ ++ D    L+ +WN S P+CNW GV C   + RVT L +  L L G I 
Sbjct:    25 DRQALLQFKSQVSEDKRVVLS-SWNHSFPLCNWKGVTCGRKNKRVTHLELGRLQLGGVIS 83

Query:    99 XXXXXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNI--CSNLPFL 156
                                 G+IP  +  +  L+ + +G N L G IP  +  CS L  L
Sbjct:    84 PSIGNLSFLVSLDLYENFFGGTIPQEVGQLSRLEYLDMGINYLRGPIPLGLYNCSRL--L 141

Query:   157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG 216
               L L  N   G +PS L + T L  L+L  N+  G +P  +GNLT L+ L +  N L+G
Sbjct:   142 N-LRLDSNRLGGSVPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEG 200

Query:   217 EIPREFGNLTELEQFSLPTNN 237
             EIP +   LT++    L  NN
Sbjct:   201 EIPSDVAQLTQIWSLQLVANN 221

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 66/198 (33%), Positives = 94/198 (47%)

Query:    39 DRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIP 98
             DR ALL  K+ ++    + L+ +WN S P+CNW  V C     RVT LN+  L L G + 
Sbjct:    25 DRQALLEFKSQVSEGKRDVLS-SWNNSFPLCNWKWVTCGRKHKRVTHLNLGGLQLGGIVS 83

Query:    99 XXXXXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158
                                 G IP  +  ++ L+++ +  N L G IP  + SN   L  
Sbjct:    84 PSIGNVSFLISLDLSDNAFGGIIPREVGNLFRLEHLYMAFNSLEGGIPATL-SNCSRLLN 142

Query:   159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI 218
             L L  N    G+PS L + T L  L L  N+  G +PR +GNLT LK L    N ++GE+
Sbjct:   143 LDLYSNPLRQGVPSELGSLTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEGEV 202

Query:   219 PREFGNLTELEQFSLPTN 236
             P E   L+++    L  N
Sbjct:   203 PDELARLSQMVGLGLSMN 220

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)]

 Score = 281 (104.0 bits), Expect = 2.4e-23, P = 2.4e-23
 Identities = 62/199 (31%), Positives = 98/199 (49%)

Query:    39 DRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIP 98
             D  ALL  K+ ++ +    +  +WN S+P CNW GV C     RV  LN+    L G I 
Sbjct:    31 DMQALLEFKSQVSENNKREVLASWNHSSPFCNWIGVTCGRRRERVISLNLGGFKLTGVIS 90

Query:    99 XXXXXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158
                                  +IP  +  ++ L+ +++  N L G+IP+++ SN   L  
Sbjct:    91 PSIGNLSFLRLLNLADNSFGSTIPQKVGRLFRLQYLNMSYNLLEGRIPSSL-SNCSRLST 149

Query:   159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI 218
             + LS N    G+PS L + + L  L L+ N+ +G  P  +GNLT L+ L    N+++GEI
Sbjct:   150 VDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGEI 209

Query:   219 PREFGNLTELEQFSLPTNN 237
             P E   LT++  F +  N+
Sbjct:   210 PDEVARLTQMVFFQIALNS 228

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0010204 "defense response signaling pathway, resistance gene-independent" evidence=IMP

GO:0016045 "detection of bacterium" evidence=RCA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0002764 "immune response-regulating signaling pathway" evidence=IMP

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0019199 "transmembrane receptor protein kinase activity" evidence=TAS

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009581 "detection of external stimulus" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0050776 "regulation of immune response" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2033000 AT1G25320 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 4.1e-23, P = 4.1e-23
 Identities = 68/191 (35%), Positives = 99/191 (51%)

Query:    42 ALLALKAHITHDPTNFLAKNWNTSTP-VCNWTGVACDVHSHRVTV-LNISSLNLRGTIPX 99
             ALL LK  I+ DP   L+ NWN+     C+W GV CD   ++V V L+I    L G +P 
Sbjct:    29 ALLTLKQSISKDPDGSLS-NWNSENQNPCSWNGVTCD--DNKVVVSLSIPKKKLLGYLPS 85

Query:   100 XXXXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159
                                G++P  +F    L+++ L  N LSG IP  I  +L FL+ L
Sbjct:    86 SLGLLSNLRHLNLRSNELSGNLPVELFKAQGLQSLVLYGNFLSGSIPNEI-GDLKFLQIL 144

Query:   160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG-NLTKLKVLYIGANRLQGEI 218
              LS N  +G IP ++  C  LR+  L+ N+ +G+VP   G +L  L+ L + +N L G +
Sbjct:   145 DLSRNSLNGSIPESVLKCNRLRSFDLSQNNLTGSVPSGFGQSLASLQKLDLSSNNLIGLV 204

Query:   219 PREFGNLTELE 229
             P + GNLT L+
Sbjct:   205 PDDLGNLTRLQ 215

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

TAIR|locus:2182870 EMS1 "EXCESS MICROSPOROCYTES1" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 68/197 (34%), Positives = 103/197 (52%)

Query:    42 ALLALKAHITHDPTNFLAKNWNTSTPV--CNWTGVACDVHSHRVTVLNISSLNLRGTIPX 99
             +L++ K  +  +P+  L  +WN S+    C+W GV C +   RV  L++ SL+LRG IP 
Sbjct:    29 SLISFKRSL-ENPS--LLSSWNVSSSASHCDWVGVTCLLG--RVNSLSLPSLSLRGQIPK 83

Query:   100 XXXXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159
                                G IP  I+ +  L+ + L  N L+G +P  + S LP L +L
Sbjct:    84 EISSLKNLRELCLAGNQFSGKIPPEIWNLKHLQTLDLSGNSLTGLLP-RLLSELPQLLYL 142

Query:   160 SLSLNMFHGGIP-STLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI 218
              LS N F G +P S   +   L +L ++ N  SG +P EIG L+ L  LY+G N   G+I
Sbjct:   143 DLSDNHFSGSLPPSFFISLPALSSLDVSNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQI 202

Query:   219 PREFGNLTELEQFSLPT 235
             P E GN++ L+ F+ P+
Sbjct:   203 PSEIGNISLLKNFAAPS 219

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0010234 "tapetal cell fate specification" evidence=IMP

GO:0016020 "membrane" evidence=IDA

GO:0019199 "transmembrane receptor protein kinase activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-35
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-24
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-22
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-21
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-19
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-16
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-15
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-14
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	9e-12
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	4e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  133 bits (335), Expect = 2e-35
 Identities = 87/221 (39%), Positives = 118/221 (53%), Gaps = 31/221 (14%)

Query: 43  LLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTV----------------- 85
           LL+ K+ I +DP  +L+ NWN+S  VC W G+ C+  S  V++                 
Sbjct: 34  LLSFKSSI-NDPLKYLS-NWNSSADVCLWQGITCNNSSRVVSIDLSGKNISGKISSAIFR 91

Query: 86  ------LNISSLNLRGTIPSQLGNLS-SLQSLNLSCNRLSGSIPS-TIFTIYTLKNVSLG 137
                 +N+S+  L G IP  +   S SL+ LNLS N  +GSIP  +I  + TL    L 
Sbjct: 92  LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETL---DLS 148

Query: 138 KNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE 197
            N LSG+IP +I S    L+ L L  N+  G IP++L+N T L  L+LA N   G +PRE
Sbjct: 149 NNMLSGEIPNDIGS-FSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE 207

Query: 198 IGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           +G +  LK +Y+G N L GEIP E G LT L    L  NNL
Sbjct: 208 LGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  101 bits (254), Expect = 1e-24
 Identities = 60/147 (40%), Positives = 84/147 (57%), Gaps = 1/147 (0%)

Query: 92  NLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICS 151
           NL G IP ++G L+SL  L+L  N L+G IPS++  +  L+ + L +NKLSG IP +I S
Sbjct: 223 NLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS 282

Query: 152 NLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGA 211
            L  L  L LS N   G IP  +     L  L L  N+F+G +P  + +L +L+VL + +
Sbjct: 283 -LQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 212 NRLQGEIPREFGNLTELEQFSLPTNNL 238
           N+  GEIP+  G    L    L TNNL
Sbjct: 342 NKFSGEIPKNLGKHNNLTVLDLSTNNL 368

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =   99 bits (249), Expect = 6e-24
 Identities = 65/144 (45%), Positives = 82/144 (56%), Gaps = 4/144 (2%)

Query: 92  NLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICS 151
           NL G IPS LGNL +LQ L L  N+LSG IP +IF++  L ++ L  N LSG+IP  +  
Sbjct: 247 NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP-ELVI 305

Query: 152 NLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGA 211
            L  LE L L  N F G IP  L++   L+ L L  N FSG +P+ +G    L VL +  
Sbjct: 306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLST 365

Query: 212 NRLQGEIPREF---GNLTELEQFS 232
           N L GEIP      GNL +L  FS
Sbjct: 366 NNLTGEIPEGLCSSGNLFKLILFS 389

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 95.3 bits (237), Expect = 3e-22
 Identities = 58/156 (37%), Positives = 89/156 (57%), Gaps = 2/156 (1%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
           V  L+IS+ NL+G I S+  ++ SLQ L+L+ N+  G +P + F    L+N+ L +N+ S
Sbjct: 430 VYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDS-FGSKRLENLDLSRNQFS 488

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
           G +P  +  +L  L  L LS N   G IP  LS+C  L +L L++N  SG +P     + 
Sbjct: 489 GAVPRKL-GSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMP 547

Query: 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
            L  L +  N+L GEIP+  GN+  L Q ++  N+L
Sbjct: 548 VLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHL 583

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 92.2 bits (229), Expect = 3e-21
 Identities = 54/153 (35%), Positives = 88/153 (57%), Gaps = 1/153 (0%)

Query: 86  LNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQI 145
           L++S+  L G IP+ +G+ SSL+ L+L  N L G IP+++  + +L+ ++L  N+L GQI
Sbjct: 145 LDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQI 204

Query: 146 PTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLK 205
           P  +   +  L+++ L  N   G IP  +   T L  L L YN+ +G +P  +GNL  L+
Sbjct: 205 PREL-GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263

Query: 206 VLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
            L++  N+L G IP    +L +L    L  N+L
Sbjct: 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSL 296

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 91.4 bits (227), Expect = 6e-21
 Identities = 52/157 (33%), Positives = 85/157 (54%), Gaps = 1/157 (0%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
            +  L ++S  L G IP +LG + SL+ + L  N LSG IP  I  + +L ++ L  N L
Sbjct: 189 SLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNL 248

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
           +G IP+++  NL  L++L L  N   G IP ++ +   L +L L+ N  SG +P  +  L
Sbjct: 249 TGPIPSSL-GNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQL 307

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
             L++L++ +N   G+IP    +L  L+   L +N  
Sbjct: 308 QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 86.4 bits (214), Expect = 3e-19
 Identities = 57/159 (35%), Positives = 84/159 (52%), Gaps = 2/159 (1%)

Query: 80  SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN 139
           S  +  L + S +L G IP  LG   SL+ + L  N  SG +PS    +  +  + +  N
Sbjct: 379 SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438

Query: 140 KLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG 199
            L G+I +    ++P L+ LSL+ N F GG+P        L  L L+ N FSGAVPR++G
Sbjct: 439 NLQGRINSRKW-DMPSLQMLSLARNKFFGGLPD-SFGSKRLENLDLSRNQFSGAVPRKLG 496

Query: 200 NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           +L++L  L +  N+L GEIP E  +  +L    L  N L
Sbjct: 497 SLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 84.5 bits (209), Expect = 1e-18
 Identities = 58/181 (32%), Positives = 85/181 (46%), Gaps = 26/181 (14%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIF--------------- 126
           R+ VL + S    G IP  LG  ++L  L+LS N L+G IP  +                
Sbjct: 333 RLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSL 392

Query: 127 ---------TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNC 177
                       +L+ V L  N  SG++P+   + LP + FL +S N   G I S   + 
Sbjct: 393 EGEIPKSLGACRSLRRVRLQDNSFSGELPSEF-TKLPLVYFLDISNNNLQGRINSRKWDM 451

Query: 178 TYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237
             L+ LSLA N F G +P   G+  +L+ L +  N+  G +PR+ G+L+EL Q  L  N 
Sbjct: 452 PSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENK 510

Query: 238 L 238
           L
Sbjct: 511 L 511

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 84.1 bits (208), Expect = 2e-18
 Identities = 54/153 (35%), Positives = 74/153 (48%), Gaps = 1/153 (0%)

Query: 85  VLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQ 144
           +L++ S N  G IP  L +L  LQ L L  N+ SG IP  +     L  + L  N L+G+
Sbjct: 312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGE 371

Query: 145 IPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKL 204
           IP  +CS+    + +  S N   G IP +L  C  LR + L  N FSG +P E   L  +
Sbjct: 372 IPEGLCSSGNLFKLILFS-NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLV 430

Query: 205 KVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237
             L I  N LQG I     ++  L+  SL  N 
Sbjct: 431 YFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 76.4 bits (188), Expect = 7e-16
 Identities = 45/116 (38%), Positives = 66/116 (56%), Gaps = 1/116 (0%)

Query: 80  SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN 139
           S R+  L++S     G +P +LG+LS L  L LS N+LSG IP  + +   L ++ L  N
Sbjct: 474 SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHN 533

Query: 140 KLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP 195
           +LSGQIP +  S +P L  L LS N   G IP  L N   L  +++++N   G++P
Sbjct: 534 QLSGQIPASF-SEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 76.0 bits (187), Expect = 1e-15
 Identities = 46/137 (33%), Positives = 75/137 (54%), Gaps = 6/137 (4%)

Query: 85  VLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQ 144
           +L+++     G +P   G+   L++L+LS N+ SG++P  + ++  L  + L +NKLSG+
Sbjct: 456 MLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGE 514

Query: 145 IPTNI--CSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
           IP  +  C  L  L+   LS N   G IP++ S    L  L L+ N  SG +P+ +GN+ 
Sbjct: 515 IPDELSSCKKLVSLD---LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVE 571

Query: 203 KLKVLYIGANRLQGEIP 219
            L  + I  N L G +P
Sbjct: 572 SLVQVNISHNHLHGSLP 588

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 74.1 bits (182), Expect = 4e-15
 Identities = 35/90 (38%), Positives = 51/90 (56%), Gaps = 1/90 (1%)

Query: 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA 193
           + L    L G IP +I S L  L+ ++LS N   G IP +L + T L  L L+YN F+G+
Sbjct: 423 LGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481

Query: 194 VPREIGNLTKLKVLYIGANRLQGEIPREFG 223
           +P  +G LT L++L +  N L G +P   G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 71.0 bits (174), Expect = 4e-14
 Identities = 46/133 (34%), Positives = 62/133 (46%), Gaps = 29/133 (21%)

Query: 71  WTGVACDVHSHR----VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIF 126
           W+G  C   S +    +  L + +  LRG IP+ +  L  LQS+NLS N + G+IP    
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP---- 459

Query: 127 TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLA 186
                   SLG              ++  LE L LS N F+G IP +L   T LR L+L 
Sbjct: 460 -------PSLG--------------SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498

Query: 187 YNDFSGAVPREIG 199
            N  SG VP  +G
Sbjct: 499 GNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 64.1 bits (156), Expect = 9e-12
 Identities = 36/88 (40%), Positives = 54/88 (61%), Gaps = 1/88 (1%)

Query: 86  LNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQI 145
           L +S   L G IP +L +   L SL+LS N+LSG IP++   +  L  + L +N+LSG+I
Sbjct: 504 LKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEI 563

Query: 146 PTNICSNLPFLEFLSLSLNMFHGGIPST 173
           P N+  N+  L  +++S N  HG +PST
Sbjct: 564 PKNL-GNVESLVQVNISHNHLHGSLPST 590

Length = 968

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 56.2 bits (136), Expect = 4e-11
 Identities = 21/41 (51%), Positives = 28/41 (68%), Gaps = 2/41 (4%)

Query: 38 TDRDALLALKAHITHDPTNFLAKNWNTSTPV-CNWTGVACD 77
           DRDALLA K+ +  DP+  L+ +WN S+   C+WTGV CD
Sbjct: 3  DDRDALLAFKSSLNGDPSGALS-SWNPSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.6 bits (134), Expect = 6e-09
 Identities = 28/84 (33%), Positives = 46/84 (54%)

Query: 155 FLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRL 214
           F++ L L      G IP+ +S   +L++++L+ N   G +P  +G++T L+VL +  N  
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478

Query: 215 QGEIPREFGNLTELEQFSLPTNNL 238
            G IP   G LT L   +L  N+L
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSL 502

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 38.8 bits (90), Expect = 0.002
 Identities = 45/139 (32%), Positives = 66/139 (47%), Gaps = 7/139 (5%)

Query: 101 LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160
           L  L++L SL+L  N ++   P        LK + L  NK+   +P+ +  NLP L+ L 
Sbjct: 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLD 169

Query: 161 LSLN-MFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP 219
           LS N +    +P  LSN + L  L L+ N  S  +P EI  L+ L+ L +  N +  E+ 
Sbjct: 170 LSFNDLSD--LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELL 225

Query: 220 REFGNLTELEQFSLPTNNL 238
               NL  L    L  N L
Sbjct: 226 SSLSNLKNLSGLELSNNKL 244

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.95
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.81
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.74
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.71
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.67
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.62
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.61
PLN03150	623	hypothetical protein; Provisional	99.61
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.6
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.51
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.51
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.48
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.41
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.41
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.38
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.38
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.38
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.38
PLN03150	623	hypothetical protein; Provisional	99.33
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.33
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.32
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.31
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.31
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.31
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.29
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.28
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.22
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.13
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.09
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.06
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	99.0
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.82
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.76
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.62
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.56
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.55
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.54
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.49
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.43
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.42
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.41
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.39
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.39
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.38
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.36
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.29
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	98.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.21
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.13
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.07
PRK15386	426	type III secretion protein GogB; Provisional	97.97
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.89
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.86
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.78
PRK15386	426	type III secretion protein GogB; Provisional	97.78
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.64
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.59
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.58
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	97.55
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.54
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.37
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.95
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.62
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.73
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	95.14
smart00370	26	LRR Leucine-rich repeats, outliers.	95.14
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.1
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.48
smart00370	26	LRR Leucine-rich repeats, outliers.	94.48
KOG1947	482	consensus Leucine rich repeat proteins, some prote	94.04
KOG4308	478	consensus LRR-containing protein [Function unknown	93.1
KOG3864	221	consensus Uncharacterized conserved protein [Funct	92.96
KOG1947	482	consensus Leucine rich repeat proteins, some prote	92.3
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.21
KOG0473	326	consensus Leucine-rich repeat protein [Function un	92.12
KOG4308	478	consensus LRR-containing protein [Function unknown	91.94
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	91.7
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.8
KOG4341	483	consensus F-box protein containing LRR [General fu	85.7
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	84.39
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	84.34

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.95  E-value=2.3e-27  Score=225.99  Aligned_cols=206  Identities=38%  Similarity=0.660  Sum_probs=136.2

Q ss_pred             hhhHHHHHHHHHhcCCCCCccccCCCCCCCCCCccceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCC
Q 025426           37 ITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNR  116 (253)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~l~~~w~~~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~  116 (253)
                      +.|..+++.|++.+. +|...+.. |....++|.|.|+.|.. ..+++.|+++++.+.+..+..+..+++|+.|++++|.
T Consensus        28 ~~~~~~l~~~~~~~~-~~~~~~~~-w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~  104 (968)
T PLN00113         28 AEELELLLSFKSSIN-DPLKYLSN-WNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQ  104 (968)
T ss_pred             HHHHHHHHHHHHhCC-CCcccCCC-CCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCCc
Confidence            368899999999984 67767777 98888999999999974 3689999999999998888889999999999999999


Q ss_pred             CCCcCChhhh-ccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCC
Q 025426          117 LSGSIPSTIF-TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP  195 (253)
Q Consensus       117 l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  195 (253)
                      +.+.+|..+. .+.+|++|++++|.+++.+|.   ..+++|++|++++|.+++.+|..+..+++|++|++++|.+.+.+|
T Consensus       105 ~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~---~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p  181 (968)
T PLN00113        105 LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR---GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIP  181 (968)
T ss_pred             cCCcCChHHhccCCCCCEEECcCCccccccCc---cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCC
Confidence            9888887665 777788887777777655554   224445555555555544444444444555555555554444444


Q ss_pred             ccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhh
Q 025426          196 REIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF  248 (253)
Q Consensus       196 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  248 (253)
                      ..+.++++|++|++++|.+.+.+|..++.+++|+.|++++|++++.+|..+..
T Consensus       182 ~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~  234 (968)
T PLN00113        182 NSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG  234 (968)
T ss_pred             hhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhc
Confidence            44444444444444444444444444444444444444444444444444333

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=9.1e-22  Score=187.78  Aligned_cols=168  Identities=33%  Similarity=0.577  Sum_probs=95.4

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      +++++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+ ..+.+|++|+
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~  218 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL-GQMKSLKWIY  218 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHH-cCcCCccEEE
Confidence            345555555555555555555566666666666666655556666666666666666666555555544 5555566666


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +++|.+++.+|..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~  298 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG  298 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeecc
Confidence            66665555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             ecchhhhhc
Q 025426          241 MILNFLQFY  249 (253)
Q Consensus       241 ~~p~~~~~l  249 (253)
                      .+|..+..+
T Consensus       299 ~~p~~~~~l  307 (968)
T PLN00113        299 EIPELVIQL  307 (968)
T ss_pred             CCChhHcCC
Confidence            555544433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.81  E-value=2.3e-22  Score=148.34  Aligned_cols=164  Identities=31%  Similarity=0.558  Sum_probs=150.0

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ..+++.|.+++|.++ .+|+.+..+.+|+.|++.+|.+. .+|..++.+++|+.|++.-|.+. .+|.++ +.++.|+.|
T Consensus        32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgf-gs~p~levl  107 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGF-GSFPALEVL  107 (264)
T ss_pred             hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCcccc-CCCchhhhh
Confidence            467899999999999 88888999999999999999998 89999999999999999999998 888887 899999999


Q ss_pred             EeecCcCCC-CCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426          160 SLSLNMFHG-GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       160 ~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      |+.+|.+.. .+|..|..+..|+.|.+++|.+. .+|..++++++|+.|.+.+|.+- .+|+.++.+..|+.|.+.+|++
T Consensus       108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence            999999864 68888999999999999999998 89999999999999999999987 8899999999999999999999


Q ss_pred             ceecchhhhhcc
Q 025426          239 QVMILNFLQFYS  250 (253)
Q Consensus       239 ~~~~p~~~~~l~  250 (253)
                      + ++|++++++.
T Consensus       186 ~-vlppel~~l~  196 (264)
T KOG0617|consen  186 T-VLPPELANLD  196 (264)
T ss_pred             e-ecChhhhhhh
Confidence            8 5555666553

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.74  E-value=1.1e-18  Score=150.17  Aligned_cols=169  Identities=20%  Similarity=0.213  Sum_probs=112.3

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      +++.|+|++|.|+..-...|..+.+|..|.|+.|+++..-+..|.++++|+.|++..|.|. .+....|.++++|+.|.+
T Consensus       174 ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~ir-ive~ltFqgL~Sl~nlkl  252 (873)
T KOG4194|consen  174 NIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIR-IVEGLTFQGLPSLQNLKL  252 (873)
T ss_pred             CceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccccee-eehhhhhcCchhhhhhhh
Confidence            3455555555555444444555555555555555555222223334555555555555554 333333455555555555


Q ss_pred             ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCcee
Q 025426          162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM  241 (253)
Q Consensus       162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  241 (253)
                      .+|.+...-...|..+.++++|+|..|++...-...+.+++.|+.|++++|.+...-++.+..++.|+.|+|++|+++..
T Consensus       253 qrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l  332 (873)
T KOG4194|consen  253 QRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRL  332 (873)
T ss_pred             hhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccC
Confidence            55555444445566777788888888888766667788899999999999999888899999999999999999999999


Q ss_pred             cchhhhhccc
Q 025426          242 ILNFLQFYSS  251 (253)
Q Consensus       242 ~p~~~~~l~~  251 (253)
                      .+.+|..|+.
T Consensus       333 ~~~sf~~L~~  342 (873)
T KOG4194|consen  333 DEGSFRVLSQ  342 (873)
T ss_pred             ChhHHHHHHH
Confidence            9999888764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.71  E-value=1.9e-17  Score=142.58  Aligned_cols=169  Identities=25%  Similarity=0.276  Sum_probs=122.8

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ...+.|++++|.+...-+..|.++++|+++++.+|.++ .+|.......+|+.|++.+|.|+ ++...-+..++.|+.||
T Consensus        78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslD  155 (873)
T KOG4194|consen   78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLD  155 (873)
T ss_pred             cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhh
Confidence            45677888888887666677778888888888888876 67776666667888888888777 55544446777788888


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      |+.|.|+...-..|..-.++++|+|++|+|+......|..+.+|.+|.|+.|+++...+..|+++++|+.|+|..|.|.-
T Consensus       156 LSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  156 LSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            88887774333566666678888888888876666777777778888888888776666777778888888888887765


Q ss_pred             ecchhhhhccc
Q 025426          241 MILNFLQFYSS  251 (253)
Q Consensus       241 ~~p~~~~~l~~  251 (253)
                      .---.|++|++
T Consensus       236 ve~ltFqgL~S  246 (873)
T KOG4194|consen  236 VEGLTFQGLPS  246 (873)
T ss_pred             ehhhhhcCchh
Confidence            54555555543

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.67  E-value=5.2e-18  Score=125.44  Aligned_cols=144  Identities=31%  Similarity=0.544  Sum_probs=129.8

Q ss_pred             CCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCc
Q 025426          101 LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL  180 (253)
Q Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  180 (253)
                      +-.+.+++.|.+++|+++ ..|..++.+.+|+.|++.+|+++ ++|..+ +.+++|+.|+++-|.+. ..|..|+.++.|
T Consensus        29 Lf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~i-ssl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSI-SSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             ccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhh-hhchhhhheecchhhhh-cCccccCCCchh
Confidence            345678899999999998 78888999999999999999999 999999 89999999999999997 889999999999


Q ss_pred             ceEeeecCcCcc-cCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426          181 RTLSLAYNDFSG-AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       181 ~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  250 (253)
                      +.||+.+|++.. .+|..|..+..|+.|++++|.+. .+|+..+++++|+.|.+..|.+. ..|.+++.+.
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt  173 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT  173 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHH
Confidence            999999999864 57888989999999999999997 88999999999999999999987 4566666543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.62  E-value=5.6e-17  Score=133.72  Aligned_cols=170  Identities=22%  Similarity=0.278  Sum_probs=124.2

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccC-CCCcCcCchhHhcCCCC--
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK-NKLSGQIPTNICSNLPF--  155 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~--  155 (253)
                      -++..+.++|..|+|+...+..|+.+++|+.|||++|.|+.+.|++|.++.+|.+|-+.+ |.|+ .+|...|.++.+  
T Consensus        65 LP~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~-~l~k~~F~gL~slq  143 (498)
T KOG4237|consen   65 LPPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKIT-DLPKGAFGGLSSLQ  143 (498)
T ss_pred             CCCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchh-hhhhhHhhhHHHHH
Confidence            345688999999999977788899999999999999999988899999998887776655 8887 777766544433  


Q ss_pred             ----------------------ccEEEeecCcCCCCCC------------------------------------------
Q 025426          156 ----------------------LEFLSLSLNMFHGGIP------------------------------------------  171 (253)
Q Consensus       156 ----------------------L~~L~l~~n~~~~~~~------------------------------------------  171 (253)
                                            +..|.+.+|.+. .++                                          
T Consensus       144 rLllNan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsg  222 (498)
T KOG4237|consen  144 RLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSG  222 (498)
T ss_pred             HHhcChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccc
Confidence                                  333333333332 111                                          


Q ss_pred             ---------------------------------------------ccCCCCCCcceEeeecCcCcccCCccccCCCCCCe
Q 025426          172 ---------------------------------------------STLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKV  206 (253)
Q Consensus       172 ---------------------------------------------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  206 (253)
                                                                   ..|..+++|+.|++++|.++++-+..|..+..+++
T Consensus       223 arc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~e  302 (498)
T KOG4237|consen  223 ARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQE  302 (498)
T ss_pred             ceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhh
Confidence                                                         11223567777777777777777777777777777


Q ss_pred             eecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426          207 LYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       207 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  250 (253)
                      |.|..|++...-...|.++..|+.|+|.+|+|+-..|..|+.+.
T Consensus       303 L~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~  346 (498)
T KOG4237|consen  303 LYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLF  346 (498)
T ss_pred             hhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccc
Confidence            77777777644556677888888999999999888888877654

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.61  E-value=6.2e-17  Score=140.71  Aligned_cols=130  Identities=30%  Similarity=0.504  Sum_probs=72.2

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCCh-hhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPS-TIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ..++.|||++|++. .+|..+..-+++-.|++++|++. .+|. .+.++..|-.||+++|.+. .+|+.+ ..+.+|++|
T Consensus       103 ~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~-RRL~~LqtL  178 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQI-RRLSMLQTL  178 (1255)
T ss_pred             ccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHH-HHHhhhhhh
Confidence            45666777777666 66666666666666666666665 3343 3345555666666666665 566655 555555555


Q ss_pred             EeecCcCC-------------------------CCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcC
Q 025426          160 SLSLNMFH-------------------------GGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRL  214 (253)
Q Consensus       160 ~l~~n~~~-------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l  214 (253)
                      .|++|.+.                         ..+|.++..+.+|..+|++.|++. ..|+.+.++.+|+.|+|++|++
T Consensus       179 ~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i  257 (1255)
T KOG0444|consen  179 KLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI  257 (1255)
T ss_pred             hcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce
Confidence            55555432                         122333344444555555555554 4555555555555555555554


Q ss_pred             c
Q 025426          215 Q  215 (253)
Q Consensus       215 ~  215 (253)
                      +
T Consensus       258 t  258 (1255)
T KOG0444|consen  258 T  258 (1255)
T ss_pred             e
Confidence            4

>PLN03150 hypothetical protein; Provisional

Probab=99.61  E-value=1.2e-14  Score=132.01  Aligned_cols=151  Identities=29%  Similarity=0.518  Sum_probs=123.5

Q ss_pred             CCChhhHHHHHHHHHhcCCCCCccccCCCCCCCCCC-----ccceeeeCCC----CCeEEEEEeCCCCccccCCccCCCC
Q 025426           34 SSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVC-----NWTGVACDVH----SHRVTVLNISSLNLRGTIPSQLGNL  104 (253)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~w~~~~~~c-----~~~g~~c~~~----~~~l~~L~l~~~~l~~~~~~~~~~l  104 (253)
                      .+...|..+|..++..+. ++..  .+ |..  ++|     .|.|+.|...    ...++.|+|++|.+.+.+|..+..+
T Consensus       368 ~t~~~~~~aL~~~k~~~~-~~~~--~~-W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L  441 (623)
T PLN03150        368 KTLLEEVSALQTLKSSLG-LPLR--FG-WNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKL  441 (623)
T ss_pred             ccCchHHHHHHHHHHhcC-Cccc--CC-CCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCC
Confidence            445568899999998884 3321  24 853  344     7999999521    1258999999999999999999999


Q ss_pred             CCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCC-CCcceE
Q 025426          105 SSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNC-TYLRTL  183 (253)
Q Consensus       105 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l-~~L~~L  183 (253)
                      ++|+.|++++|.+.+.+|..+..+++|++|++++|.+.|.+|+.+ ..+++|++|++++|.+++.+|..+... .++..+
T Consensus       442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l-~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l  520 (623)
T PLN03150        442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESL-GQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF  520 (623)
T ss_pred             CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHH-hcCCCCCEEECcCCcccccCChHHhhccccCceE
Confidence            999999999999999999999999999999999999998898887 889999999999999999999877653 456778


Q ss_pred             eeecCcCc
Q 025426          184 SLAYNDFS  191 (253)
Q Consensus       184 ~L~~n~l~  191 (253)
                      ++.+|...
T Consensus       521 ~~~~N~~l  528 (623)
T PLN03150        521 NFTDNAGL  528 (623)
T ss_pred             EecCCccc
Confidence            88888644

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.60  E-value=9.1e-17  Score=139.68  Aligned_cols=157  Identities=26%  Similarity=0.404  Sum_probs=118.7

Q ss_pred             CCeEEEEEeCCCCcc-ccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426           80 SHRVTVLNISSLNLR-GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF  158 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  158 (253)
                      .+.++.+++++|++. .-+|..+-.+..|+.||+++|+++ +.|..+..-+++-+|++++|+|. +||..+|.++.-|-+
T Consensus        77 Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie-tIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   77 LPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE-TIPNSLFINLTDLLF  154 (1255)
T ss_pred             chhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc-cCCchHHHhhHhHhh
Confidence            356777888888875 346777888899999999999998 88999999999999999999998 999999999999999


Q ss_pred             EEeecCcCCCCCCccCCCCCCcceEeeecCcCccc-------------------------CCccccCCCCCCeeecccCc
Q 025426          159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA-------------------------VPREIGNLTKLKVLYIGANR  213 (253)
Q Consensus       159 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------------------------~p~~l~~l~~L~~L~l~~n~  213 (253)
                      |||++|.+. .+|+....+..|++|+|++|.+...                         +|..+..+.+|..+|++.|.
T Consensus       155 LDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~  233 (1255)
T KOG0444|consen  155 LDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENN  233 (1255)
T ss_pred             hccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccC
Confidence            999999997 7788888899999999999986522                         33344444455555555555


Q ss_pred             CcccCChhhcCCCCCCEEeccCCCCce
Q 025426          214 LQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       214 l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +. ..|+.+-.+++|+.|+|++|.|+.
T Consensus       234 Lp-~vPecly~l~~LrrLNLS~N~ite  259 (1255)
T KOG0444|consen  234 LP-IVPECLYKLRNLRRLNLSGNKITE  259 (1255)
T ss_pred             CC-cchHHHhhhhhhheeccCcCceee
Confidence            54 445555555555555555555543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.51  E-value=9.7e-16  Score=126.87  Aligned_cols=156  Identities=31%  Similarity=0.436  Sum_probs=129.3

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCE-EECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQS-LNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      -|+..+++.|++. .+|..+..+..+.+ +.+++|.+. ..|..+..+++|..|++++|.+. .+|... ..+..|++++
T Consensus       389 ~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~-~~lv~Lq~Ln  464 (565)
T KOG0472|consen  389 IVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQKLTFLDLSNNLLN-DLPEEM-GSLVRLQTLN  464 (565)
T ss_pred             ceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhhcceeeecccchhh-hcchhh-hhhhhhheec
Confidence            3788888888887 77777766665554 566666654 67788888999999999999998 899887 6778899999


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      ++.|.+. .+|.....+..++++-.++|++....|..+.++.+|.+||+.+|.+. .+|+.+++|.+|+.|++.+|+|. 
T Consensus       465 lS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr-  541 (565)
T KOG0472|consen  465 LSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR-  541 (565)
T ss_pred             ccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC-
Confidence            9999887 78887777778888888889998666666999999999999999998 88999999999999999999998 


Q ss_pred             ecch
Q 025426          241 MILN  244 (253)
Q Consensus       241 ~~p~  244 (253)
                      .|+.
T Consensus       542 ~Pr~  545 (565)
T KOG0472|consen  542 QPRH  545 (565)
T ss_pred             CCHH
Confidence            5543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.51  E-value=1.4e-16  Score=131.87  Aligned_cols=159  Identities=28%  Similarity=0.467  Sum_probs=112.1

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      .+..++..+|+++ .+|+.+..+.++..+++.+|+++ ..|+..-.+..|++||...|-++ .+|+.+ +.+.+|+-|++
T Consensus       138 ~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~l-g~l~~L~~LyL  213 (565)
T KOG0472|consen  138 DLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPEL-GGLESLELLYL  213 (565)
T ss_pred             hhhhhhccccccc-cCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhh-cchhhhHHHHh
Confidence            4556677777776 66777777777777777777777 44444444777888888888776 778777 77788888888


Q ss_pred             ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccc-cCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      .+|++. ..| .|.++..|.+++++.|.+. .+|.+. .++.++.+||+.+|+++ +.|+.+.-+.+|++||+++|.+++
T Consensus       214 ~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~  289 (565)
T KOG0472|consen  214 RRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISS  289 (565)
T ss_pred             hhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCcccc
Confidence            888876 555 5777777777777777776 555444 36777777777777776 667777777777777777777764


Q ss_pred             ecchhhhhc
Q 025426          241 MILNFLQFY  249 (253)
Q Consensus       241 ~~p~~~~~l  249 (253)
                      . |.+++++
T Consensus       290 L-p~sLgnl  297 (565)
T KOG0472|consen  290 L-PYSLGNL  297 (565)
T ss_pred             C-Ccccccc
Confidence            4 3344443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.48  E-value=1.7e-13  Score=125.55  Aligned_cols=111  Identities=25%  Similarity=0.269  Sum_probs=78.1

Q ss_pred             CCCEEEccCCCCcCcCchhHhc-----------------CCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcc
Q 025426          130 TLKNVSLGKNKLSGQIPTNICS-----------------NLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG  192 (253)
Q Consensus       130 ~L~~L~l~~n~l~~~~~~~~~~-----------------~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  192 (253)
                      +|++|++++|.++ .+|... .                 ...+|+.|++++|.++ .+|..   .++|+.|++++|.++ 
T Consensus       343 ~Lq~LdLS~N~Ls-~LP~lp-~~L~~L~Ls~N~L~~LP~l~~~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-  415 (788)
T PRK15387        343 GLQELSVSDNQLA-SLPTLP-SELYKLWAYNNRLTSLPALPSGLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-  415 (788)
T ss_pred             ccceEecCCCccC-CCCCCC-cccceehhhccccccCcccccccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-
Confidence            5777777777776 454311 1                 1134666666666665 34432   246777778877777 


Q ss_pred             cCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426          193 AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       193 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  251 (253)
                      .+|..+   .+|+.|++++|+++ .+|..+..+++|+.|++++|++++.+|..++.+.+
T Consensus       416 sIP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~s  470 (788)
T PRK15387        416 SLPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITS  470 (788)
T ss_pred             CCCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHHhc
Confidence            355432   46788899999987 78889999999999999999999999988866543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.41  E-value=1.9e-14  Score=129.79  Aligned_cols=153  Identities=30%  Similarity=0.378  Sum_probs=124.2

Q ss_pred             CCeEEEEEeCCCCccccCCccC--------------------------CCCCCCCEEECCCCCCCCcCChhhhccCCCCE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQL--------------------------GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKN  133 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~--------------------------~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  133 (253)
                      ...+++|+|..|.+. ..|..+                          ..++.|+.|++.+|.++...-+.+.++++|+.
T Consensus       309 ~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKV  387 (1081)
T KOG0618|consen  309 LKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKV  387 (1081)
T ss_pred             cceeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceee
Confidence            356888999998876 322211                          01234778888888888777777888999999


Q ss_pred             EEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCc
Q 025426          134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANR  213 (253)
Q Consensus       134 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~  213 (253)
                      |++++|++. ++|+..+.++..|++|+++||+++ .+|..+..++.|++|...+|.+. ..| ++..++.|+.+|++.|.
T Consensus       388 LhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~  463 (1081)
T KOG0618|consen  388 LHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNN  463 (1081)
T ss_pred             eeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccch
Confidence            999999998 999998899999999999999998 78888999999999999999998 777 78889999999999999


Q ss_pred             CcccCChhhcCCCCCCEEeccCCC
Q 025426          214 LQGEIPREFGNLTELEQFSLPTNN  237 (253)
Q Consensus       214 l~~~~~~~~~~l~~L~~L~l~~n~  237 (253)
                      ++...-......++|++||+++|.
T Consensus       464 L~~~~l~~~~p~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  464 LSEVTLPEALPSPNLKYLDLSGNT  487 (1081)
T ss_pred             hhhhhhhhhCCCcccceeeccCCc
Confidence            875433333333899999999997

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.41  E-value=6e-13  Score=122.28  Aligned_cols=146  Identities=25%  Similarity=0.412  Sum_probs=86.7

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      .+++.|++++|.++ .+|..+.  .+|+.|++++|.+. .+|..+.  .+|++|++++|.+. .+|..++   .+|++|+
T Consensus       220 ~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~---~sL~~L~  289 (754)
T PRK15370        220 GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP---EELRYLS  289 (754)
T ss_pred             cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC---CCCcEEE
Confidence            46778888888777 4554443  35777777777766 5555443  35667777766666 5665442   3566666


Q ss_pred             eecCcCCCCCCccCC-------------------CCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChh
Q 025426          161 LSLNMFHGGIPSTLS-------------------NCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE  221 (253)
Q Consensus       161 l~~n~~~~~~~~~~~-------------------~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~  221 (253)
                      +++|.++. +|..+.                   ..++|++|++++|.++ .+|..+.  ++|+.|++++|+++ .+|..
T Consensus       290 Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~L~-~LP~~  364 (754)
T PRK15370        290 VYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPASLP--PELQVLDVSKNQIT-VLPET  364 (754)
T ss_pred             CCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChhhc--CcccEEECCCCCCC-cCChh
Confidence            66666652 232111                   1135666666666665 3444332  56777777777776 45554


Q ss_pred             hcCCCCCCEEeccCCCCceecc
Q 025426          222 FGNLTELEQFSLPTNNLQVMIL  243 (253)
Q Consensus       222 ~~~l~~L~~L~l~~n~l~~~~p  243 (253)
                      +.  +.|+.|++++|+++..++
T Consensus       365 lp--~~L~~LdLs~N~Lt~LP~  384 (754)
T PRK15370        365 LP--PTITTLDVSRNALTNLPE  384 (754)
T ss_pred             hc--CCcCEEECCCCcCCCCCH
Confidence            42  567777777777775543

>PLN03210 Resistant to P

Probab=99.38  E-value=5.2e-12  Score=122.51  Aligned_cols=159  Identities=19%  Similarity=0.232  Sum_probs=87.9

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      .+++.|++.++.+. .++..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+ ..+.+|+.|+
T Consensus       611 ~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si-~~L~~L~~L~  687 (1153)
T PLN03210        611 ENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSI-QYLNKLEDLD  687 (1153)
T ss_pred             cCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhh-hccCCCCEEe
Confidence            45666666666665 4555556666677777766543334443 5556666666666655434566555 5566666666


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeee---------------------cCcCcccCCccc---------------------
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLA---------------------YNDFSGAVPREI---------------------  198 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~---------------------~n~l~~~~p~~l---------------------  198 (253)
                      +++|..-..+|..+ ++++|+.|+++                     +|.+. .+|..+                     
T Consensus       688 L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~i~-~lP~~~~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        688 MSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIE-EFPSNLRLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             CCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecCCCccc-cccccccccccccccccccchhhcccc
Confidence            66654322444332 33444444444                     44333 222211                     


Q ss_pred             ---------cCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecch
Q 025426          199 ---------GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILN  244 (253)
Q Consensus       199 ---------~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  244 (253)
                               ...++|+.|++++|...+.+|..++++++|+.|++++|...+.+|.
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~  820 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPT  820 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCC
Confidence                     0123566677777665556777777777788888777643334443

syringae 6; Provisional

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.38  E-value=1.3e-13  Score=115.75  Aligned_cols=160  Identities=24%  Similarity=0.273  Sum_probs=115.7

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCC---CCCEEECCCCCCCC----cCChhhhcc-CCCCEEEccCCCCcCcCchh---
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLS---SLQSLNLSCNRLSG----SIPSTIFTI-YTLKNVSLGKNKLSGQIPTN---  148 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~---~L~~L~l~~n~l~~----~~~~~l~~l-~~L~~L~l~~n~l~~~~~~~---  148 (253)
                      .++++.|+++++.+.+..+..+..+.   +|+.|++++|.+.+    .+...+..+ ++|++|++++|.+++.....   
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            46899999999998755555554444   49999999998873    233345566 89999999999987432222   


Q ss_pred             HhcCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCcCccc----CCccccCCCCCCeeecccCcCcccCCh
Q 025426          149 ICSNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIGANRLQGEIPR  220 (253)
Q Consensus       149 ~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~~  220 (253)
                      .+..+.+|++|++++|.+++.    ++..+...++|++|++++|.+++.    +...+..+++|++|++++|.+++....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            235667899999999998742    233455667999999999988743    234456778899999999998863333


Q ss_pred             hhc-----CCCCCCEEeccCCCCc
Q 025426          221 EFG-----NLTELEQFSLPTNNLQ  239 (253)
Q Consensus       221 ~~~-----~l~~L~~L~l~~n~l~  239 (253)
                      .+.     ..+.|+.|++++|.++
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~  263 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDIT  263 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCC
Confidence            222     2478999999999987

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.38  E-value=2.5e-14  Score=118.29  Aligned_cols=160  Identities=26%  Similarity=0.283  Sum_probs=127.2

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCC-CCCCCcCChhh------------------------hccCCCCE
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSC-NRLSGSIPSTI------------------------FTIYTLKN  133 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l------------------------~~l~~L~~  133 (253)
                      ..+++++|||++|+|+.+-|..|.++.++..|-+.+ |+|+......|                        ..+++|..
T Consensus        89 ~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~l  168 (498)
T KOG4237|consen   89 TLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSL  168 (498)
T ss_pred             chhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcch
Confidence            457899999999999989999999999998876665 88873222233                        23333333


Q ss_pred             EEccCCCC------------------------------------------------------------------------
Q 025426          134 VSLGKNKL------------------------------------------------------------------------  141 (253)
Q Consensus       134 L~l~~n~l------------------------------------------------------------------------  141 (253)
                      |.+..|.+                                                                        
T Consensus       169 LslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~  248 (498)
T KOG4237|consen  169 LSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSL  248 (498)
T ss_pred             hcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhH
Confidence            33333211                                                                        


Q ss_pred             -------------cCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeee
Q 025426          142 -------------SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLY  208 (253)
Q Consensus       142 -------------~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  208 (253)
                                   .+..|...|..+++|++|++++|+++..-+.+|.+...++.|.|..|++.......|.++..|++|+
T Consensus       249 esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~  328 (498)
T KOG4237|consen  249 ESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLS  328 (498)
T ss_pred             HhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeee
Confidence                         1123444467899999999999999988889999999999999999999866677889999999999


Q ss_pred             cccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426          209 IGANRLQGEIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       209 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      |.+|+++...|.+|..+..|.+|++-.|++
T Consensus       329 L~~N~it~~~~~aF~~~~~l~~l~l~~Np~  358 (498)
T KOG4237|consen  329 LYDNQITTVAPGAFQTLFSLSTLNLLSNPF  358 (498)
T ss_pred             ecCCeeEEEecccccccceeeeeehccCcc
Confidence            999999988899999999999999998876

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.38  E-value=1.1e-13  Score=116.19  Aligned_cols=163  Identities=20%  Similarity=0.251  Sum_probs=121.2

Q ss_pred             CeEEEEEeCCCCccc----cCCccCCCC-CCCCEEECCCCCCCCc----CChhhhccCCCCEEEccCCCCcCcCchhH--
Q 025426           81 HRVTVLNISSLNLRG----TIPSQLGNL-SSLQSLNLSCNRLSGS----IPSTIFTIYTLKNVSLGKNKLSGQIPTNI--  149 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~----~~~~~~~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--  149 (253)
                      ++++.|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    +...+..+.+|++|++++|.+.+.....+  
T Consensus       108 ~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~  187 (319)
T cd00116         108 SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAE  187 (319)
T ss_pred             CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHH
Confidence            559999999999873    233345566 8999999999998843    33455667899999999999984322222  


Q ss_pred             -hcCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCcCcccCCcccc-----CCCCCCeeecccCcCcc---
Q 025426          150 -CSNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYNDFSGAVPREIG-----NLTKLKVLYIGANRLQG---  216 (253)
Q Consensus       150 -~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~L~l~~n~l~~---  216 (253)
                       +...++|++|++++|.+++.    ++..+..+++|++|++++|.+++.....+.     ..+.|+.|++++|.+++   
T Consensus       188 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~  267 (319)
T cd00116         188 GLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGA  267 (319)
T ss_pred             HHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHH
Confidence             24557999999999998743    334566788999999999998853332222     24789999999999873   


Q ss_pred             -cCChhhcCCCCCCEEeccCCCCceecc
Q 025426          217 -EIPREFGNLTELEQFSLPTNNLQVMIL  243 (253)
Q Consensus       217 -~~~~~~~~l~~L~~L~l~~n~l~~~~p  243 (253)
                       .+...+..+++|+++++++|.+.....
T Consensus       268 ~~l~~~~~~~~~L~~l~l~~N~l~~~~~  295 (319)
T cd00116         268 KDLAEVLAEKESLLELDLRGNKFGEEGA  295 (319)
T ss_pred             HHHHHHHhcCCCccEEECCCCCCcHHHH
Confidence             334566777899999999999986633

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.38  E-value=1.8e-12  Score=119.11  Aligned_cols=143  Identities=27%  Similarity=0.451  Sum_probs=92.0

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ..++.|++++|.++ .+|..+.  .+|+.|++++|.++ .+|..+.  .+|+.|++++|.+. .+|..+.   .+|++|+
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~  268 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP---SALQSLD  268 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh---CCCCEEE
Confidence            35667777777776 4554433  47777888777776 4565443  46888888888887 7777662   4688888


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCcccc-------------------CCCCCCeeecccCcCcccCChh
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG-------------------NLTKLKVLYIGANRLQGEIPRE  221 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-------------------~l~~L~~L~l~~n~l~~~~~~~  221 (253)
                      +++|.++ .+|..+.  ++|+.|++++|.++. +|..+.                   -.++|+.|++++|.++ .+|..
T Consensus       269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt-~LP~~  343 (754)
T PRK15370        269 LFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALT-SLPAS  343 (754)
T ss_pred             CcCCccC-ccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcCCccccCCccccccceeccccCCccc-cCChh
Confidence            8888887 5665543  478888888888873 343221                   0134555555555555 23433


Q ss_pred             hcCCCCCCEEeccCCCCce
Q 025426          222 FGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       222 ~~~l~~L~~L~l~~n~l~~  240 (253)
                      +  .++|+.|++++|+++.
T Consensus       344 l--~~sL~~L~Ls~N~L~~  360 (754)
T PRK15370        344 L--PPELQVLDVSKNQITV  360 (754)
T ss_pred             h--cCcccEEECCCCCCCc
Confidence            3  2567777888777764

>PLN03150 hypothetical protein; Provisional

Probab=99.33  E-value=3.5e-12  Score=116.10  Aligned_cols=108  Identities=34%  Similarity=0.625  Sum_probs=72.2

Q ss_pred             CCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecc
Q 025426          131 LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIG  210 (253)
Q Consensus       131 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  210 (253)
                      ++.|++++|.+.|.+|..+ ..+++|+.|++++|.+++.+|..+..+++|+.|++++|++.+.+|+.++++++|+.|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            5566677777766666665 566777777777777766666666677777777777777776667667777777777777


Q ss_pred             cCcCcccCChhhcCC-CCCCEEeccCCCCc
Q 025426          211 ANRLQGEIPREFGNL-TELEQFSLPTNNLQ  239 (253)
Q Consensus       211 ~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~  239 (253)
                      +|.++|.+|..++.. .++..+++.+|...
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccc
Confidence            777776666666543 34556666666543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.33  E-value=3.4e-14  Score=122.33  Aligned_cols=151  Identities=32%  Similarity=0.487  Sum_probs=113.9

Q ss_pred             EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426           84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL  163 (253)
Q Consensus        84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  163 (253)
                      ..+.+..|.+. .+|..+..+..|++++|+.|.+. .+|..+..+ -|+.|.+++|+++ .+|+.+ ....+|..||.+.
T Consensus       101 e~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli~sNNkl~-~lp~~i-g~~~tl~~ld~s~  175 (722)
T KOG0532|consen  101 ESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLIVSNNKLT-SLPEEI-GLLPTLAHLDVSK  175 (722)
T ss_pred             HHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEEEecCccc-cCCccc-ccchhHHHhhhhh
Confidence            34455555554 56666677777777777777776 666665544 4777777777777 777777 5677777888888


Q ss_pred             CcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecc
Q 025426          164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMIL  243 (253)
Q Consensus       164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  243 (253)
                      |.+. .+|..++.+.+|+.|++.+|++. .+|+++..+ .|..||++.|++. .+|-.|.+|++|++|-|.+|+++..+.
T Consensus       176 nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSPPA  251 (722)
T KOG0532|consen  176 NEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSPPA  251 (722)
T ss_pred             hhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCChH
Confidence            8776 66777778888888888888877 677777744 4889999999998 889999999999999999999986554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.32  E-value=2e-12  Score=98.33  Aligned_cols=105  Identities=32%  Similarity=0.398  Sum_probs=31.6

Q ss_pred             eEEEEEeCCCCccccCCccCC-CCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           82 RVTVLNISSLNLRGTIPSQLG-NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      .++.|+|.+|.|+ .+. .+. .+.+|+.|++++|.++. +. .+..+++|++|++++|.++ .+.+.+...+++|++|+
T Consensus        20 ~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~   94 (175)
T PF14580_consen   20 KLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELY   94 (175)
T ss_dssp             ------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS----S-CHHHHHH-TT--EEE
T ss_pred             ccccccccccccc-ccc-chhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEE
Confidence            4567777777776 232 233 45667777777777662 22 3556677777777777776 55544433466777777


Q ss_pred             eecCcCCCCC-CccCCCCCCcceEeeecCcCc
Q 025426          161 LSLNMFHGGI-PSTLSNCTYLRTLSLAYNDFS  191 (253)
Q Consensus       161 l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~  191 (253)
                      +++|++.... -..+..+++|++|++.+|++.
T Consensus        95 L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   95 LSNNKISDLNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             -TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             CcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence            7777765321 134455566666666666655

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.31  E-value=9.7e-13  Score=100.09  Aligned_cols=126  Identities=28%  Similarity=0.328  Sum_probs=52.4

Q ss_pred             CCCCCCCEEECCCCCCCCcCChhhh-ccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccC-CCCCC
Q 025426          102 GNLSSLQSLNLSCNRLSGSIPSTIF-TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTL-SNCTY  179 (253)
Q Consensus       102 ~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~  179 (253)
                      .+..++++|++++|.++. +. .+. .+.+|+.|++++|.+. .+.. + ..++.|++|++++|.++. +...+ ..+++
T Consensus        16 ~n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~-~l~~-l-~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~   89 (175)
T PF14580_consen   16 NNPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQIT-KLEG-L-PGLPRLKTLDLSNNRISS-ISEGLDKNLPN   89 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S---TT------TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCc-cccC-c-cChhhhhhcccCCCCCCc-cccchHHhCCc
Confidence            344578999999999973 32 354 5789999999999998 7653 3 778999999999999984 44434 46899


Q ss_pred             cceEeeecCcCcccC-CccccCCCCCCeeecccCcCcccC---ChhhcCCCCCCEEec
Q 025426          180 LRTLSLAYNDFSGAV-PREIGNLTKLKVLYIGANRLQGEI---PREFGNLTELEQFSL  233 (253)
Q Consensus       180 L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~l  233 (253)
                      |++|++++|++.... -..+..+++|+.|++.+|+++...   ...+..+|+|+.||-
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            999999999997532 245678899999999999998532   234678899999974

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.31  E-value=2.7e-13  Score=122.48  Aligned_cols=151  Identities=26%  Similarity=0.326  Sum_probs=127.4

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCCh-hhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPS-TIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      +.+..|++.+|.+++..-+.+.++.+|+.|++++|++. .+|. .+.++..|++|++++|.++ .+|+.+ ..+..|++|
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tv-a~~~~L~tL  435 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLT-TLPDTV-ANLGRLHTL  435 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhh-hhhHHH-HhhhhhHHH
Confidence            45788999999999888888999999999999999998 5555 6778999999999999999 999888 889999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCC
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN  236 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  236 (253)
                      ...+|++. .+| .+..++.|+.+|++.|+++...-......++|++||++||.....--+.|..++++...++.-|
T Consensus       436 ~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  436 RAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            99999997 777 7889999999999999998544333344489999999999864444566777777777777666

>PLN03210 Resistant to P

Probab=99.31  E-value=2.3e-11  Score=118.04  Aligned_cols=127  Identities=24%  Similarity=0.292  Sum_probs=96.2

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      .+++.|.+.++.+. .+|..+ ...+|+.|++.+|.+. .++..+..+++|++|+++++.....+|.  +..+++|++|+
T Consensus       589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls~l~~Le~L~  663 (1153)
T PLN03210        589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LSMATNLETLK  663 (1153)
T ss_pred             cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc--cccCCcccEEE
Confidence            35677777777665 566655 4578999999999887 6777778889999999988764447775  36788999999


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCc
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANR  213 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~  213 (253)
                      +++|.....+|..+..+++|+.|++++|.....+|..+ ++++|+.|++++|.
T Consensus       664 L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~  715 (1153)
T PLN03210        664 LSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCS  715 (1153)
T ss_pred             ecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCC
Confidence            99987656788888999999999999875444666554 56666666666654

syringae 6; Provisional

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.29  E-value=1.8e-11  Score=112.44  Aligned_cols=94  Identities=28%  Similarity=0.317  Sum_probs=59.4

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      +++.|++.+|+++ .+|..   .++|+.|++++|+++ .+|..   .++|++|++++|.+. .+|..    ..+|+.|++
T Consensus       223 ~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~N~L~-~Lp~l----p~~L~~L~L  289 (788)
T PRK15387        223 HITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLT-SLPVL---PPGLLELSIFSNPLT-HLPAL----PSGLCKLWI  289 (788)
T ss_pred             CCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccC-cccCc---ccccceeeccCCchh-hhhhc----hhhcCEEEC
Confidence            5667777777766 34432   356777777777776 34432   356677777777766 55542    245667777


Q ss_pred             ecCcCCCCCCccCCCCCCcceEeeecCcCcc
Q 025426          162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG  192 (253)
Q Consensus       162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  192 (253)
                      ++|.++ .+|.   .+++|+.|++++|.+++
T Consensus       290 s~N~Lt-~LP~---~p~~L~~LdLS~N~L~~  316 (788)
T PRK15387        290 FGNQLT-SLPV---LPPGLQELSVSDNQLAS  316 (788)
T ss_pred             cCCccc-cccc---cccccceeECCCCcccc
Confidence            777776 3443   23578888888888774

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.28  E-value=9.4e-14  Score=119.64  Aligned_cols=160  Identities=25%  Similarity=0.435  Sum_probs=142.1

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ...+..|++.|++. .+|..+..+..|+.+.++.|.+. .+|..+..+..|.+||++.|+++ .+|..+ +.++ |+.|-
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~l-C~lp-Lkvli  149 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGL-CDLP-LKVLI  149 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhh-hcCc-ceeEE
Confidence            34677899999888 88988888889999999999998 88999999999999999999999 999998 4555 89999


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +++|+++ .+|+.++....|..|+.+.|.+. .+|..++.+.+|+.|.+..|.+. .+|..+..++ |..||++.|++. 
T Consensus       150 ~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-  224 (722)
T KOG0532|consen  150 VSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-  224 (722)
T ss_pred             EecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-
Confidence            9999998 88888889999999999999998 78999999999999999999987 6777888665 789999999997 


Q ss_pred             ecchhhhhcc
Q 025426          241 MILNFLQFYS  250 (253)
Q Consensus       241 ~~p~~~~~l~  250 (253)
                      .+|-.|..++
T Consensus       225 ~iPv~fr~m~  234 (722)
T KOG0532|consen  225 YLPVDFRKMR  234 (722)
T ss_pred             ecchhhhhhh
Confidence            7788887765

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.26  E-value=3.3e-12  Score=110.61  Aligned_cols=160  Identities=33%  Similarity=0.513  Sum_probs=111.4

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCC-CCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLS-SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ..++.|++.++.++ .++.....+. +|+.|++++|.+. .+|..+..+++|+.|++++|++. ++|... ...+.|+.|
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~-~~~~~L~~L  191 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLL-SNLSNLNNL  191 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhh-hhhhhhhhe
Confidence            45788888888887 5565556663 8888888888887 56666778888888888888887 777654 366778888


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCc-----------------------CcccCCccccCCCCCCeeecccCcCcc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYND-----------------------FSGAVPREIGNLTKLKVLYIGANRLQG  216 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-----------------------l~~~~p~~l~~l~~L~~L~l~~n~l~~  216 (253)
                      ++++|+++ .+|........|+++.+++|+                       +. ..+..++.++.+++|++++|+++.
T Consensus       192 ~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~  269 (394)
T COG4886         192 DLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS  269 (394)
T ss_pred             eccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceee-eccchhccccccceeccccccccc
Confidence            88888876 455443344446666666663                       32 124556667778888888888873


Q ss_pred             cCChhhcCCCCCCEEeccCCCCceecchhhhh
Q 025426          217 EIPREFGNLTELEQFSLPTNNLQVMILNFLQF  248 (253)
Q Consensus       217 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  248 (253)
                       ++. ++...+++.|++++|.+...+|...+.
T Consensus       270 -i~~-~~~~~~l~~L~~s~n~~~~~~~~~~~~  299 (394)
T COG4886         270 -ISS-LGSLTNLRELDLSGNSLSNALPLIALL  299 (394)
T ss_pred             -ccc-ccccCccCEEeccCccccccchhhhcc
Confidence             333 777888888888888887776655443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.22  E-value=1e-11  Score=107.61  Aligned_cols=153  Identities=34%  Similarity=0.523  Sum_probs=111.5

Q ss_pred             EEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccC-CCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426           85 VLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIY-TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL  163 (253)
Q Consensus        85 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  163 (253)
                      .+++..+.+... ...+..++.++.|++.+|.+. .++.....+. +|+.|++++|.+. .+|..+ ..+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~-~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPL-RNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccC-chhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhh-hccccccccccCC
Confidence            477777776422 223455688999999999998 6777777774 9999999999998 887666 7899999999999


Q ss_pred             CcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc----------------------cCChh
Q 025426          164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG----------------------EIPRE  221 (253)
Q Consensus       164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~----------------------~~~~~  221 (253)
                      |+++ .+|......++|+.|++++|.+. .+|........|+++++++|.+..                      ..+..
T Consensus       173 N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~  250 (394)
T COG4886         173 NDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPES  250 (394)
T ss_pred             chhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccch
Confidence            9998 66665558899999999999998 556554444456666666663220                      11344


Q ss_pred             hcCCCCCCEEeccCCCCceecc
Q 025426          222 FGNLTELEQFSLPTNNLQVMIL  243 (253)
Q Consensus       222 ~~~l~~L~~L~l~~n~l~~~~p  243 (253)
                      ++.++++++|++++|.++.+.+
T Consensus       251 ~~~l~~l~~L~~s~n~i~~i~~  272 (394)
T COG4886         251 IGNLSNLETLDLSNNQISSISS  272 (394)
T ss_pred             hccccccceecccccccccccc
Confidence            4556667777777777765544

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.13  E-value=4.2e-12  Score=102.15  Aligned_cols=135  Identities=24%  Similarity=0.305  Sum_probs=106.5

Q ss_pred             CCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcce
Q 025426          103 NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRT  182 (253)
Q Consensus       103 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  182 (253)
                      ....|+++|+++|.++ .+..+..-.|+++.|++++|++. .+.. + ..+++|+.||+++|.++.. ...-..+.+.++
T Consensus       282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~-~v~n-L-a~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNIKt  356 (490)
T KOG1259|consen  282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIR-TVQN-L-AELPQLQLLDLSGNLLAEC-VGWHLKLGNIKT  356 (490)
T ss_pred             hHhhhhhccccccchh-hhhhhhhhccceeEEecccccee-eehh-h-hhcccceEeecccchhHhh-hhhHhhhcCEee
Confidence            3567999999999998 67777888899999999999997 5544 3 7889999999999998732 222235678889


Q ss_pred             EeeecCcCcccCCccccCCCCCCeeecccCcCccc-CChhhcCCCCCCEEeccCCCCceecch
Q 025426          183 LSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGE-IPREFGNLTELEQFSLPTNNLQVMILN  244 (253)
Q Consensus       183 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~p~  244 (253)
                      |.++.|.+.  .-..+.++-+|..||+++|++... -...++.+|-|+.+.+.+|++.+.+..
T Consensus       357 L~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vdY  417 (490)
T KOG1259|consen  357 LKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVDY  417 (490)
T ss_pred             eehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccchH
Confidence            999999876  234567788899999999998742 134588899999999999999876653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.12  E-value=1.3e-11  Score=99.41  Aligned_cols=131  Identities=25%  Similarity=0.253  Sum_probs=108.5

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ...++++|+++|.|+ .+.+++.-.+.++.|++++|.+.. . ..++.+++|+.||+++|.++ ++...- ..+-++++|
T Consensus       283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~-v-~nLa~L~~L~~LDLS~N~Ls-~~~Gwh-~KLGNIKtL  357 (490)
T KOG1259|consen  283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT-V-QNLAELPQLQLLDLSGNLLA-ECVGWH-LKLGNIKTL  357 (490)
T ss_pred             Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceee-e-hhhhhcccceEeecccchhH-hhhhhH-hhhcCEeee
Confidence            356889999999998 788888889999999999999973 3 23889999999999999997 554333 678899999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCccc-CCccccCCCCCCeeecccCcCccc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA-VPREIGNLTKLKVLYIGANRLQGE  217 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~  217 (253)
                      .+++|.+..  -..+..+.+|..||+.+|++... -...+++++-|+.+.|.+|++.+.
T Consensus       358 ~La~N~iE~--LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~  414 (490)
T KOG1259|consen  358 KLAQNKIET--LSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS  414 (490)
T ss_pred             ehhhhhHhh--hhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence            999999852  34567788899999999999743 235688999999999999999853

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=2e-11  Score=102.47  Aligned_cols=162  Identities=25%  Similarity=0.246  Sum_probs=115.0

Q ss_pred             CCeEEEEEeCCCCcc--ccCCccCCCCCCCCEEECCCCCCCCcCC-hhhhccCCCCEEEccCCCCcCcCchhHhcCCCCc
Q 025426           80 SHRVTVLNISSLNLR--GTIPSQLGNLSSLQSLNLSCNRLSGSIP-STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL  156 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  156 (253)
                      .++++.|||+.|-+.  ..+..-...+++|+.|+++.|++..... ..-..+++|+.|.++.|+++..-...+...+++|
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            468899999998765  2333445678899999999998762221 1223578899999999998744333444678999


Q ss_pred             cEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCC--ccccCCCCCCeeecccCcCccc-CChh-----hcCCCCC
Q 025426          157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP--REIGNLTKLKVLYIGANRLQGE-IPRE-----FGNLTEL  228 (253)
Q Consensus       157 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~l~~n~l~~~-~~~~-----~~~l~~L  228 (253)
                      +.|+++.|............+..|+.|+|++|++.. .+  ...+.++.|+.|+++.+.+... .|+.     ...+++|
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL  303 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKL  303 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccc
Confidence            999999995332333334556789999999998873 33  4466788999999999888752 2433     4567889


Q ss_pred             CEEeccCCCCceec
Q 025426          229 EQFSLPTNNLQVMI  242 (253)
Q Consensus       229 ~~L~l~~n~l~~~~  242 (253)
                      ++|++..|++....
T Consensus       304 ~~L~i~~N~I~~w~  317 (505)
T KOG3207|consen  304 EYLNISENNIRDWR  317 (505)
T ss_pred             eeeecccCcccccc
Confidence            99999999986443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.06  E-value=1.1e-10  Score=73.38  Aligned_cols=59  Identities=42%  Similarity=0.558  Sum_probs=27.3

Q ss_pred             CCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCc
Q 025426          130 TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYND  189 (253)
Q Consensus       130 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  189 (253)
                      +|++|++++|.+. .+|+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~-~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLT-EIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTES-EECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCC-ccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            3444444444444 4444444444444444444444443333444444444444444443

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=99.00  E-value=3e-10  Score=71.43  Aligned_cols=59  Identities=32%  Similarity=0.500  Sum_probs=31.0

Q ss_pred             CcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCC
Q 025426          179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN  237 (253)
Q Consensus       179 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  237 (253)
                      +|++|++++|+++...+..|..+++|++|++++|.++...+..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            44555555555554433445555555555555555554444555555555555555554

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.82  E-value=1.8e-10  Score=82.54  Aligned_cols=79  Identities=30%  Similarity=0.453  Sum_probs=35.6

Q ss_pred             EEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCc
Q 025426          134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANR  213 (253)
Q Consensus       134 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~  213 (253)
                      .++++|.+. .+|+.+-...+.++++++++|.+. .+|..+..++.|+.|++..|.+. ..|+.+..+.++..|+..+|.
T Consensus        58 i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na  134 (177)
T KOG4579|consen   58 ISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENA  134 (177)
T ss_pred             Eecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCc
Confidence            344444444 444444333334444444444444 34444444444444444444444 334444444444444444444


Q ss_pred             Cc
Q 025426          214 LQ  215 (253)
Q Consensus       214 l~  215 (253)
                      +.
T Consensus       135 ~~  136 (177)
T KOG4579|consen  135 RA  136 (177)
T ss_pred             cc
Confidence            43

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=5.6e-10  Score=93.89  Aligned_cols=163  Identities=20%  Similarity=0.189  Sum_probs=117.5

Q ss_pred             CCCeEEEEEeCCCCccccCC-ccCCCCCCCCEEECCCCCCCCc--CChhhhccCCCCEEEccCCCCcCcCchhHhcCCCC
Q 025426           79 HSHRVTVLNISSLNLRGTIP-SQLGNLSSLQSLNLSCNRLSGS--IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPF  155 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  155 (253)
                      ...+++.+.|.+..+....- .....+++++.||+++|-+...  ......++++|+.|+++.|.+........-..+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            34567888888887762221 3566789999999999987633  33445689999999999999862222222134678


Q ss_pred             ccEEEeecCcCCCC-CCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccC-ChhhcCCCCCCEEec
Q 025426          156 LEFLSLSLNMFHGG-IPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI-PREFGNLTELEQFSL  233 (253)
Q Consensus       156 L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l  233 (253)
                      |+.|.++.|.+++. +-.....+|+|+.|++..|..-........-++.|+.|||++|++.+.. -...+.++.|+.|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            99999999999753 3344567899999999999532233333445678999999999976432 245678899999999


Q ss_pred             cCCCCcee
Q 025426          234 PTNNLQVM  241 (253)
Q Consensus       234 ~~n~l~~~  241 (253)
                      +.+.++++
T Consensus       279 s~tgi~si  286 (505)
T KOG3207|consen  279 SSTGIASI  286 (505)
T ss_pred             cccCcchh
Confidence            99988754

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.62  E-value=2e-08  Score=82.44  Aligned_cols=38  Identities=18%  Similarity=0.180  Sum_probs=21.6

Q ss_pred             CeEEEEEeCCCCccccCCcc----CCCCCCCCEEECCCCCCC
Q 025426           81 HRVTVLNISSLNLRGTIPSQ----LGNLSSLQSLNLSCNRLS  118 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~~n~l~  118 (253)
                      ++++.++|++|.+....++.    +..+..|++|++.+|.+.
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg  133 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLG  133 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCC
Confidence            36777777777665333322    234556666666666554

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.56  E-value=7.5e-09  Score=90.28  Aligned_cols=127  Identities=27%  Similarity=0.379  Sum_probs=87.1

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ..++.++++.|.+. ..-..+..+.+|+.+++.+|.+.. +...+..+++|++|++++|.|+ .+..  +..+..|+.|+
T Consensus        72 ~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~-~i~~--l~~l~~L~~L~  146 (414)
T KOG0531|consen   72 TSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKIT-KLEG--LSTLTLLKELN  146 (414)
T ss_pred             HhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccc-cccc--hhhccchhhhe
Confidence            34556667777666 333446677888888888888873 3333667888888888888887 5443  24566688888


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCC-ccccCCCCCCeeecccCcCc
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP-REIGNLTKLKVLYIGANRLQ  215 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~  215 (253)
                      +++|.++..  ..+..++.|+.+++++|++....+ . ...+.+++.+++.+|.+.
T Consensus       147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            888888632  334557788888888888874433 2 456677777888777765

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.55  E-value=7.4e-08  Score=90.51  Aligned_cols=148  Identities=24%  Similarity=0.303  Sum_probs=93.0

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCC--CCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNR--LSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      .+++..+-+|.+. .++... ..++|++|-+..|.  +.......|..++.|++||+++|.-.+.+|..+ +.+-+|++|
T Consensus       524 ~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I-~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSI-GELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchh-hccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHH-hhhhhhhcc
Confidence            4556666666654 233222 22367777777775  442333345567778888888776555777777 677778888


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcC--cccCChhhcCCCCCCEEec
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRL--QGEIPREFGNLTELEQFSL  233 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l--~~~~~~~~~~l~~L~~L~l  233 (253)
                      ++++..+. .+|..+.++..|.+|++..+.....+|.....+++|++|.+.....  +...-..+..+.+|+.+..
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~  675 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI  675 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence            88877776 7777777777788888777765555566666677777777765432  2223334455555555544

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.54  E-value=1.1e-09  Score=97.61  Aligned_cols=127  Identities=27%  Similarity=0.319  Sum_probs=99.4

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      .+...+.++|.+. .+..++.-++.++.|+|++|++..  ...+..+++|++|||++|.+. .+|.-.-.++. |+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~--v~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTK--VDNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhh--hHHHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence            4667788888887 777778888999999999999873  337888999999999999998 77764423333 999999


Q ss_pred             ecCcCCCCCCccCCCCCCcceEeeecCcCcccCC-ccccCCCCCCeeecccCcCc
Q 025426          162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP-REIGNLTKLKVLYIGANRLQ  215 (253)
Q Consensus       162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~  215 (253)
                      .+|.++..  ..+.++.+|+.||+++|-+.+.-. .-+..+..|+.|+|.||++-
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99988632  346788899999999998774322 33556788999999999975

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.49  E-value=5.3e-09  Score=75.05  Aligned_cols=133  Identities=20%  Similarity=0.279  Sum_probs=82.2

Q ss_pred             EEEEEeCCCCccc--cCCccCCCCCCCCEEECCCCCCCCcCChhhh-ccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           83 VTVLNISSLNLRG--TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIF-TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        83 l~~L~l~~~~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ...++|+.+++-.  ..+..+....+|+..++++|.++ .+|+.|. +++.+++|++++|.+. .+|..+ ..++.|+.+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~-Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEEL-AAMPALRSL  105 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHH-hhhHHhhhc
Confidence            4456666665431  22333445566777777777777 5555554 3557777888888887 777774 777888888


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCCh
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPR  220 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~  220 (253)
                      +++.|.+. ..|..+..+.++..|+..+|.+. .+|-.+..-...-..++.++++.+.-+.
T Consensus       106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~  164 (177)
T KOG4579|consen  106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK  164 (177)
T ss_pred             ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence            88888776 55666666777777777777665 4444333223333344455556554443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.43  E-value=1.7e-08  Score=82.87  Aligned_cols=158  Identities=21%  Similarity=0.261  Sum_probs=117.6

Q ss_pred             CeEEEEEeCCCCccc----c---------CCccCCCCCCCCEEECCCCCCCCc----CChhhhccCCCCEEEccCCCCcC
Q 025426           81 HRVTVLNISSLNLRG----T---------IPSQLGNLSSLQSLNLSCNRLSGS----IPSTIFTIYTLKNVSLGKNKLSG  143 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~----~---------~~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~  143 (253)
                      ..++.|+|.+|++..    .         ...-...-+.|+++..++|++...    +...+...+.|+.+.++.|.|..
T Consensus       120 ~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~  199 (382)
T KOG1909|consen  120 TDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRP  199 (382)
T ss_pred             cCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccC
Confidence            568899999999862    1         122234457899999999998632    23455667899999999999863


Q ss_pred             cC---chhHhcCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCcCcccCCccc-----cCCCCCCeeeccc
Q 025426          144 QI---PTNICSNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYNDFSGAVPREI-----GNLTKLKVLYIGA  211 (253)
Q Consensus       144 ~~---~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~l~~  211 (253)
                      ..   -...+..+++|+.||+.+|.++..    +...+..+++|+.|++++|.+.......+     ...++|+++.+.+
T Consensus       200 eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~g  279 (382)
T KOG1909|consen  200 EGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAG  279 (382)
T ss_pred             chhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCc
Confidence            21   122347899999999999999743    34567788899999999999875433332     2468999999999


Q ss_pred             CcCccc----CChhhcCCCCCCEEeccCCCC
Q 025426          212 NRLQGE----IPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       212 n~l~~~----~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      |.++..    +...+...+.|..|+|++|.+
T Consensus       280 NeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  280 NEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             chhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            998742    233456688999999999999

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.42  E-value=3.2e-09  Score=94.64  Aligned_cols=126  Identities=29%  Similarity=0.397  Sum_probs=91.5

Q ss_pred             CCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCc-cCCCCCCcceEe
Q 025426          106 SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPS-TLSNCTYLRTLS  184 (253)
Q Consensus       106 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~  184 (253)
                      .|.+.++++|.+. ....++.-++.|+.|++++|+++ .+. .+ ..+++|++||+++|.++ .+|. ...++ .|..|.
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~-~v~-~L-r~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~  238 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFT-KVD-NL-RRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLN  238 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhh-hhH-HH-Hhcccccccccccchhc-cccccchhhh-hheeee
Confidence            4666777777776 56667777888899999999887 554 44 77888999999999887 5553 22333 488889


Q ss_pred             eecCcCcccCCccccCCCCCCeeecccCcCcccC-ChhhcCCCCCCEEeccCCCCc
Q 025426          185 LAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI-PREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       185 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      +.+|.++.  -..+.++++|+.||+++|-+.+.- -..+..+..|+.|+|.||++-
T Consensus       239 lrnN~l~t--L~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  239 LRNNALTT--LRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ecccHHHh--hhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            98888762  244667888899999998877521 233556677888888888874

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.41  E-value=5.6e-07  Score=68.85  Aligned_cols=103  Identities=21%  Similarity=0.261  Sum_probs=50.8

Q ss_pred             CCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCC-ccCCCCCCcceEe
Q 025426          106 SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIP-STLSNCTYLRTLS  184 (253)
Q Consensus       106 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~  184 (253)
                      +...+||++|.+. . -..|..++.|.+|.+.+|.|+ .+.+.+-..+++|..|.+.+|.+....- ..+..++.|++|.
T Consensus        43 ~~d~iDLtdNdl~-~-l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLR-K-LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchh-h-cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            4445555555543 1 122444555555566666555 4544443445555566666655542111 2344555666666


Q ss_pred             eecCcCcccC---CccccCCCCCCeeeccc
Q 025426          185 LAYNDFSGAV---PREIGNLTKLKVLYIGA  211 (253)
Q Consensus       185 L~~n~l~~~~---p~~l~~l~~L~~L~l~~  211 (253)
                      +-+|+++..-   --.++.+++|++||++.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            6555554211   11244556666666543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.39  E-value=1.6e-07  Score=75.91  Aligned_cols=161  Identities=21%  Similarity=0.250  Sum_probs=100.6

Q ss_pred             CeEEEEEeCCCCcc--ccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426           81 HRVTVLNISSLNLR--GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF  158 (253)
Q Consensus        81 ~~l~~L~l~~~~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  158 (253)
                      .+|+.+||.+|.|.  ..+..-+..+|+|++|++++|.+...+...-....+|++|.+.++.+...-..+....++.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            46888999999886  3455556788999999999998873332222466789999999988876666666678888888


Q ss_pred             EEeecCcCCC-----CCCccC------------------------CCCCCcceEeeecCcCccc-CCccccCCCCCCeee
Q 025426          159 LSLSLNMFHG-----GIPSTL------------------------SNCTYLRTLSLAYNDFSGA-VPREIGNLTKLKVLY  208 (253)
Q Consensus       159 L~l~~n~~~~-----~~~~~~------------------------~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~  208 (253)
                      |+++.|....     .-.+.+                        ..++++..+-+..|.+... ........+.+..|+
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            8888884321     000111                        1123444444444444321 112223345556677


Q ss_pred             cccCcCccc-CChhhcCCCCCCEEeccCCCCcee
Q 025426          209 IGANRLQGE-IPREFGNLTELEQFSLPTNNLQVM  241 (253)
Q Consensus       209 l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~  241 (253)
                      |+.|++... --+++..++.|..|.+++|++.+.
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            777776542 235567777777777777776544

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.39  E-value=3.5e-08  Score=86.09  Aligned_cols=154  Identities=27%  Similarity=0.371  Sum_probs=108.2

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ...++.+++.+|.|. .+...+..+++|++|++++|.++..  ..+..+..|+.|++++|.+. .+..  +..+..|+.+
T Consensus        94 ~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~~N~i~-~~~~--~~~l~~L~~l  167 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLSGNLIS-DISG--LESLKSLKLL  167 (414)
T ss_pred             ccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheeccCcch-hccC--Cccchhhhcc
Confidence            467899999999998 4443367789999999999999733  34567778999999999998 6554  3558899999


Q ss_pred             EeecCcCCCCCC-ccCCCCCCcceEeeecCcCcccCC--------------cccc------CCCC--CCeeecccCcCcc
Q 025426          160 SLSLNMFHGGIP-STLSNCTYLRTLSLAYNDFSGAVP--------------REIG------NLTK--LKVLYIGANRLQG  216 (253)
Q Consensus       160 ~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p--------------~~l~------~l~~--L~~L~l~~n~l~~  216 (253)
                      ++++|.++..-+ . ...+.+++.+++.+|.+.....              ..+.      ....  |+.+++++|++. 
T Consensus       168 ~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~~~~~~~l~~~~l~~n~i~~~~~l~~~~~~~L~~l~l~~n~i~-  245 (414)
T KOG0531|consen  168 DLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEGLDLLKKLVLLSLLDNKISKLEGLNELVMLHLRELYLSGNRIS-  245 (414)
T ss_pred             cCCcchhhhhhhhh-hhhccchHHHhccCCchhcccchHHHHHHHHhhcccccceeccCcccchhHHHHHHhcccCccc-
Confidence            999999974433 2 4677788888888887752211              0011      1111  566777777765 


Q ss_pred             cCChhhcCCCCCCEEeccCCCCcee
Q 025426          217 EIPREFGNLTELEQFSLPTNNLQVM  241 (253)
Q Consensus       217 ~~~~~~~~l~~L~~L~l~~n~l~~~  241 (253)
                      ..+..+..+.++..+++..|++...
T Consensus       246 ~~~~~~~~~~~l~~l~~~~n~~~~~  270 (414)
T KOG0531|consen  246 RSPEGLENLKNLPVLDLSSNRISNL  270 (414)
T ss_pred             cccccccccccccccchhhcccccc
Confidence            3334566667777777777766543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.38  E-value=2.7e-07  Score=86.83  Aligned_cols=131  Identities=27%  Similarity=0.391  Sum_probs=108.9

Q ss_pred             CCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCC--CcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCc
Q 025426          103 NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK--LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL  180 (253)
Q Consensus       103 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  180 (253)
                      .....+.+.+.+|.+. ..+... ..++|++|-+..|.  +. .++..+|..++.|+.||+++|.--+.+|..++.+-+|
T Consensus       521 ~~~~~rr~s~~~~~~~-~~~~~~-~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L  597 (889)
T KOG4658|consen  521 SWNSVRRMSLMNNKIE-HIAGSS-ENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL  597 (889)
T ss_pred             chhheeEEEEeccchh-hccCCC-CCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence            3456777888888765 344333 34489999999997  55 7888888999999999999987666899999999999


Q ss_pred             ceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCC
Q 025426          181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN  237 (253)
Q Consensus       181 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  237 (253)
                      ++|++++..+. .+|..+.+++.|.+|++..+.....+|.....+++|++|.+....
T Consensus       598 ryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  598 RYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             hcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            99999999999 899999999999999999887655667878889999999887654

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.36  E-value=5.6e-07  Score=52.22  Aligned_cols=40  Identities=28%  Similarity=0.522  Sum_probs=25.9

Q ss_pred             CCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceec
Q 025426          202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI  242 (253)
Q Consensus       202 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  242 (253)
                      ++|++|++++|+++ .+|..++.+++|+.|++++|+++++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCCCc
Confidence            35677777777776 45556777777777777777777544

...

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.29  E-value=4.6e-07  Score=83.18  Aligned_cols=142  Identities=23%  Similarity=0.262  Sum_probs=95.9

Q ss_pred             CCCCEEECCCCCCC-CcCChhh-hccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcce
Q 025426          105 SSLQSLNLSCNRLS-GSIPSTI-FTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRT  182 (253)
Q Consensus       105 ~~L~~L~l~~n~l~-~~~~~~l-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  182 (253)
                      .+|+.|++++...- ..-+..+ ..+|.|++|.+++-.+...--..++.++++|..||+++..++..  ..++.+++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            46888888775422 2223333 34788999998887765322234567888999999999888743  56778888888


Q ss_pred             EeeecCcCcc-cCCccccCCCCCCeeecccCcCcccC--C----hhhcCCCCCCEEeccCCCCceecchhhhh
Q 025426          183 LSLAYNDFSG-AVPREIGNLTKLKVLYIGANRLQGEI--P----REFGNLTELEQFSLPTNNLQVMILNFLQF  248 (253)
Q Consensus       183 L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~--~----~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  248 (253)
                      |.+.+=.+.. ..-..+.++++|+.||+|........  .    +.-..+|+|+.||.+++.+.+.+-+.+..
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~  272 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLN  272 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHH
Confidence            8887766652 22245678899999999987654221  1    11235789999999998887666555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=98.25  E-value=1.9e-06  Score=66.00  Aligned_cols=106  Identities=20%  Similarity=0.185  Sum_probs=82.5

Q ss_pred             cCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccC-CccccCCCCCCe
Q 025426          128 IYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAV-PREIGNLTKLKV  206 (253)
Q Consensus       128 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~  206 (253)
                      ..+...+|+++|.+. .++.  |..++.|.+|.+.+|.|+...|.--.-+++|..|.+.+|++.... -.-+..+++|++
T Consensus        41 ~d~~d~iDLtdNdl~-~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~  117 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLR-KLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEY  117 (233)
T ss_pred             ccccceecccccchh-hccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccce
Confidence            457788999999987 5544  578899999999999999666655556788999999999987321 133667899999


Q ss_pred             eecccCcCcccC---ChhhcCCCCCCEEeccCC
Q 025426          207 LYIGANRLQGEI---PREFGNLTELEQFSLPTN  236 (253)
Q Consensus       207 L~l~~n~l~~~~---~~~~~~l~~L~~L~l~~n  236 (253)
                      |.+-+|+++..-   ...+..+++|+.||+++=
T Consensus       118 Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV  150 (233)
T KOG1644|consen  118 LTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV  150 (233)
T ss_pred             eeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence            999999987421   234678899999998763

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.21  E-value=1.9e-06  Score=50.01  Aligned_cols=36  Identities=39%  Similarity=0.639  Sum_probs=18.5

Q ss_pred             CCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCC
Q 025426          130 TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFH  167 (253)
Q Consensus       130 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~  167 (253)
                      +|++|++++|+++ .+|+.+ ..+++|++|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l-~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPEL-SNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHG-TTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchH-hCCCCCCEEEecCCCCC
Confidence            4555555555555 555443 45555555555555554

...

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.13  E-value=4.3e-06  Score=48.29  Aligned_cols=40  Identities=48%  Similarity=1.025  Sum_probs=29.9

Q ss_pred             hhhHHHHHHHHHhcCCCCCccccCCCCCC--CCCCccceeeeC
Q 025426           37 ITDRDALLALKAHITHDPTNFLAKNWNTS--TPVCNWTGVACD   77 (253)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~l~~~w~~~--~~~c~~~g~~c~   77 (253)
                      ..|..+|++||..+..++...+.+ |..+  .++|.|.||.|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~~~l~~-W~~~~~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPSGVLSS-WNPSSDSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC-CCCTT---TT--S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccCccccc-CCCcCCCCCeeeccEEeC
Confidence            468899999999997667677888 9987  799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=9.7e-08  Score=77.20  Aligned_cols=85  Identities=24%  Similarity=0.228  Sum_probs=49.8

Q ss_pred             EEEEEeCCCCccc-cCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCC-CcCcCchhHhcCCCCccEEE
Q 025426           83 VTVLNISSLNLRG-TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK-LSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        83 l~~L~l~~~~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ++.+||+...|+. .+-..+..+.+|+.|.+.++.+...+...+++-..|+.|+++.+. ++..-...++.++..|..|+
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LN  266 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELN  266 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcC
Confidence            5666666666652 222233455667777777777766666666677777777776653 44222233445666666666


Q ss_pred             eecCcCC
Q 025426          161 LSLNMFH  167 (253)
Q Consensus       161 l~~n~~~  167 (253)
                      ++.|.++
T Consensus       267 lsWc~l~  273 (419)
T KOG2120|consen  267 LSWCFLF  273 (419)
T ss_pred             chHhhcc
Confidence            6666543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.97  E-value=2.6e-05  Score=66.94  Aligned_cols=71  Identities=15%  Similarity=0.268  Sum_probs=40.9

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCC-CCcCcCchhHhcCCCCccEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN-KLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L  159 (253)
                      .+++.|+++++.+. .+|. +.  .+|+.|.+++|.-...+|..+  ..+|++|++++| .+. .+|+       +|+.|
T Consensus        52 ~~l~~L~Is~c~L~-sLP~-LP--~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sLP~-------sLe~L  117 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV-LP--NELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GLPE-------SVRSL  117 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC-CC--CCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cccc-------ccceE
Confidence            45667888877666 4452 22  357778877654333555544  246777777777 444 4443       34555


Q ss_pred             EeecCc
Q 025426          160 SLSLNM  165 (253)
Q Consensus       160 ~l~~n~  165 (253)
                      ++..+.
T Consensus       118 ~L~~n~  123 (426)
T PRK15386        118 EIKGSA  123 (426)
T ss_pred             EeCCCC
Confidence            555444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.89  E-value=4.9e-05  Score=54.87  Aligned_cols=105  Identities=23%  Similarity=0.274  Sum_probs=39.2

Q ss_pred             cCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCC
Q 025426          100 QLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTY  179 (253)
Q Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  179 (253)
                      .|....+|+.+.+.. .+.......|....+|+.+.+.++ +. .++...|..+.+++.+.+.+ .+.......|..+++
T Consensus         7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~-~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT-SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS-CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-cc-ccceeeeecccccccccccc-ccccccccccccccc
Confidence            344445555555543 333333344445555555555543 43 44555555555555555543 222122234444555


Q ss_pred             cceEeeecCcCcccCCccccCCCCCCeeecc
Q 025426          180 LRTLSLAYNDFSGAVPREIGNLTKLKVLYIG  210 (253)
Q Consensus       180 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  210 (253)
                      ++.+.+..+ +.......+.+. +++.+.+.
T Consensus        83 l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~  111 (129)
T PF13306_consen   83 LKNIDIPSN-ITEIGSSSFSNC-NLKEINIP  111 (129)
T ss_dssp             ECEEEETTT--BEEHTTTTTT--T--EEE-T
T ss_pred             ccccccCcc-ccEEchhhhcCC-CceEEEEC
Confidence            555555443 332223333333 44544444

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.88  E-value=1.1e-05  Score=64.77  Aligned_cols=136  Identities=20%  Similarity=0.223  Sum_probs=64.5

Q ss_pred             CCCCCCCCEEECCCCCCCCcCChhh----hccCCCCEEEccCCCCcCcCch-----hHh--------cCCCCccEEEeec
Q 025426          101 LGNLSSLQSLNLSCNRLSGSIPSTI----FTIYTLKNVSLGKNKLSGQIPT-----NIC--------SNLPFLEFLSLSL  163 (253)
Q Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~~l----~~l~~L~~L~l~~n~l~~~~~~-----~~~--------~~l~~L~~L~l~~  163 (253)
                      +..+++|+..+++.|.+....|..+    +.-..|++|.+++|.+. .+..     .+|        ..-+.|+.+...+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCC-ccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            3456677777777776665555443    33456677777777654 2211     110        1234566666666


Q ss_pred             CcCCCCCC----ccCCCCCCcceEeeecCcCcccCC-----ccccCCCCCCeeecccCcCccc----CChhhcCCCCCCE
Q 025426          164 NMFHGGIP----STLSNCTYLRTLSLAYNDFSGAVP-----REIGNLTKLKVLYIGANRLQGE----IPREFGNLTELEQ  230 (253)
Q Consensus       164 n~~~~~~~----~~~~~l~~L~~L~L~~n~l~~~~p-----~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~  230 (253)
                      |.+....-    ..+..-.+|+++.+..|.|.-...     ..+..+.+|++||++.|-++-.    +.+++..++.|+.
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrE  246 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRE  246 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhh
Confidence            66531111    112222355555665555541100     1123345566666666655421    2223334444455


Q ss_pred             EeccCCC
Q 025426          231 FSLPTNN  237 (253)
Q Consensus       231 L~l~~n~  237 (253)
                      |.+..+-
T Consensus       247 L~lnDCl  253 (388)
T COG5238         247 LRLNDCL  253 (388)
T ss_pred             ccccchh
Confidence            5544443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.86  E-value=4.9e-06  Score=76.56  Aligned_cols=136  Identities=22%  Similarity=0.247  Sum_probs=95.2

Q ss_pred             CeEEEEEeCCCCcc-ccCCccC-CCCCCCCEEECCCCCCCC-cCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCcc
Q 025426           81 HRVTVLNISSLNLR-GTIPSQL-GNLSSLQSLNLSCNRLSG-SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLE  157 (253)
Q Consensus        81 ~~l~~L~l~~~~l~-~~~~~~~-~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  157 (253)
                      .+++.|++++...- ..-+..+ ..+|+|+.|.+.+-.+.. .+.....++++|..||+++++++ .+ .++ +.+++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GI-S~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGI-SRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHH-hccccHH
Confidence            46788888886542 1222223 347899999999877642 23344567899999999999998 55 555 8899999


Q ss_pred             EEEeecCcCCC-CCCccCCCCCCcceEeeecCcCcccC--C----ccccCCCCCCeeecccCcCcccCC
Q 025426          158 FLSLSLNMFHG-GIPSTLSNCTYLRTLSLAYNDFSGAV--P----REIGNLTKLKVLYIGANRLQGEIP  219 (253)
Q Consensus       158 ~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~--p----~~l~~l~~L~~L~l~~n~l~~~~~  219 (253)
                      .|.+.+=.+.. ..-..+.++++|++||++..+.....  .    +.-..+++|+.||.+++.+.+.+-
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~l  267 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEIL  267 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHH
Confidence            99887766643 22245678999999999988665221  1    122357899999999988876443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.78  E-value=9.5e-05  Score=53.36  Aligned_cols=122  Identities=19%  Similarity=0.305  Sum_probs=73.0

Q ss_pred             hhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCC
Q 025426          123 STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT  202 (253)
Q Consensus       123 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  202 (253)
                      .+|....+|+.+.+.. .+. .++...|..+.+|+.+.+.++ +.......|..+++++.+.+.. .+.......+..++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~   81 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCT   81 (129)
T ss_dssp             TTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-T
T ss_pred             HHHhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccc
Confidence            4567778999999985 576 788888899989999999886 6544557788888999999976 45435556777899


Q ss_pred             CCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426          203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       203 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  251 (253)
                      +++.+++..+ +.......|..+ +++.+.+.. .++.+....|.+.++
T Consensus        82 ~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~  127 (129)
T PF13306_consen   82 NLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTK  127 (129)
T ss_dssp             TECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG----
T ss_pred             cccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCcccccccc
Confidence            9999999765 554556678887 899999886 666677777777643

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.78  E-value=9.9e-05  Score=63.44  Aligned_cols=119  Identities=18%  Similarity=0.264  Sum_probs=74.0

Q ss_pred             CCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecC-cCCCCCCccCCCCCC
Q 025426          101 LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLN-MFHGGIPSTLSNCTY  179 (253)
Q Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~  179 (253)
                      +..+.+++.|++++|.++ .+|.   -..+|++|.++++.--..+|..+   ..+|++|++++| .+. .+|.      +
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~-sLP~------s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEIS-GLPE------S  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh---hhhhhheEccCccccc-cccc------c
Confidence            445688999999999887 5662   23479999999854333777655   368999999998 454 4453      3


Q ss_pred             cceEeeecCcCc--ccCCccccCC------------------CCCCeeecccCcCcccCChhhcCCCCCCEEeccCC
Q 025426          180 LRTLSLAYNDFS--GAVPREIGNL------------------TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN  236 (253)
Q Consensus       180 L~~L~L~~n~l~--~~~p~~l~~l------------------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  236 (253)
                      |+.|++..+...  +.+|..+..+                  ++|++|++++|... ..|..+.  .+|+.|+++.+
T Consensus       114 Le~L~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        114 VRSLEIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cceEEeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence            555566554421  1344333222                  36777777777654 2332222  46677777665

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.64  E-value=3.9e-05  Score=62.43  Aligned_cols=165  Identities=18%  Similarity=0.210  Sum_probs=108.3

Q ss_pred             CCccceeeeC-CCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCC-cCChhhhccCCCCEEEccCCCCcC--
Q 025426           68 VCNWTGVACD-VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG-SIPSTIFTIYTLKNVSLGKNKLSG--  143 (253)
Q Consensus        68 ~c~~~g~~c~-~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~--  143 (253)
                      ...|..+.|. .+.++++.|+++.|++...+...-....+|+.|-+.+..+.- .....+..+|+++.|.++.|.+..  
T Consensus        83 iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n  162 (418)
T KOG2982|consen   83 ISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLN  162 (418)
T ss_pred             hccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhc
Confidence            3456666666 678999999999999985554433466789999998877652 233445667777777777773320  


Q ss_pred             -------cCchh-------------------HhcCCCCccEEEeecCcCCCCC-CccCCCCCCcceEeeecCcCccc-CC
Q 025426          144 -------QIPTN-------------------ICSNLPFLEFLSLSLNMFHGGI-PSTLSNCTYLRTLSLAYNDFSGA-VP  195 (253)
Q Consensus       144 -------~~~~~-------------------~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~-~p  195 (253)
                             ...+.                   +..-.+++..+-+..|.+.... ...+..++.+-.|+|+.|++..- --
T Consensus       163 ~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasv  242 (418)
T KOG2982|consen  163 LDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASV  242 (418)
T ss_pred             cccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhhhcccccccHHHH
Confidence                   11110                   1123456666666777665322 24455667777899999988631 12


Q ss_pred             ccccCCCCCCeeecccCcCcccCCh------hhcCCCCCCEEe
Q 025426          196 REIGNLTKLKVLYIGANRLQGEIPR------EFGNLTELEQFS  232 (253)
Q Consensus       196 ~~l~~l~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~  232 (253)
                      .++.++++|.-|.+.++++.+.+-.      .++.+++++.|+
T Consensus       243 D~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  243 DALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             HHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            5677889999999999998754321      246778887776

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.59  E-value=4.4e-06  Score=67.17  Aligned_cols=100  Identities=29%  Similarity=0.434  Sum_probs=68.6

Q ss_pred             cCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCC-ccccCCCCCCe
Q 025426          128 IYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP-REIGNLTKLKV  206 (253)
Q Consensus       128 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~  206 (253)
                      +.+.+.|+.-++.+. .|  +++..|+.|+.|.|+-|+|+..  ..+..+++|++|+|..|.|.+... ..+.++++|+.
T Consensus        18 l~~vkKLNcwg~~L~-DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~   92 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRT   92 (388)
T ss_pred             HHHhhhhcccCCCcc-HH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhh
Confidence            445666777777776 43  4467788888888888888643  336677888888888887763221 33567888888


Q ss_pred             eecccCcCcccCCh-----hhcCCCCCCEEe
Q 025426          207 LYIGANRLQGEIPR-----EFGNLTELEQFS  232 (253)
Q Consensus       207 L~l~~n~l~~~~~~-----~~~~l~~L~~L~  232 (253)
                      |+|..|+=.|..+.     .+..+++|+.||
T Consensus        93 LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   93 LWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            88888886654433     355677777775

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.58  E-value=3.3e-05  Score=61.52  Aligned_cols=124  Identities=21%  Similarity=0.184  Sum_probs=72.9

Q ss_pred             EEEEEeCCCC-ccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCC--CCcCcCchhHhcCCCCccEE
Q 025426           83 VTVLNISSLN-LRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN--KLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        83 l~~L~l~~~~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ++.+.+.++. ..+.+......+..|+.+.+.+..++.  -..+..+++|++|.++.|  .+.+.++.-. ..+++|+++
T Consensus        20 v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~-e~~P~l~~l   96 (260)
T KOG2739|consen   20 VDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLA-EKAPNLKVL   96 (260)
T ss_pred             hhhhhcchhhhcCCCcccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehh-hhCCceeEE
Confidence            4444444332 123455555556677777777766651  123456778888888888  5655555544 456888888


Q ss_pred             EeecCcCCCC-CCccCCCCCCcceEeeecCcCcccCC---ccccCCCCCCeeec
Q 025426          160 SLSLNMFHGG-IPSTLSNCTYLRTLSLAYNDFSGAVP---REIGNLTKLKVLYI  209 (253)
Q Consensus       160 ~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l  209 (253)
                      ++++|+++.. .-..+..+.+|..|++.+|..++...   ..|.-+++|++|+-
T Consensus        97 ~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen   97 NLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             eecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            8888887621 11223455677788888877664211   22344566666653

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=97.55  E-value=2.6e-06  Score=69.08  Aligned_cols=85  Identities=28%  Similarity=0.314  Sum_probs=64.3

Q ss_pred             CCCEEECCCCCCCC-cCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCc-CCCCCC-ccCCCCCCcce
Q 025426          106 SLQSLNLSCNRLSG-SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNM-FHGGIP-STLSNCTYLRT  182 (253)
Q Consensus       106 ~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~-~~~~~l~~L~~  182 (253)
                      .|+.||+++..++. ....-+..+.+|+.|.+.++++.+.+-..+ ..-.+|+.++++++. ++.... -.+.+++.|..
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~i-AkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTI-AKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHH-hccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            58999999988762 233456778899999999999987777777 677899999999874 543222 23567788888


Q ss_pred             EeeecCcCc
Q 025426          183 LSLAYNDFS  191 (253)
Q Consensus       183 L~L~~n~l~  191 (253)
                      |+++++.+.
T Consensus       265 LNlsWc~l~  273 (419)
T KOG2120|consen  265 LNLSWCFLF  273 (419)
T ss_pred             cCchHhhcc
Confidence            888888765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.54  E-value=4.6e-05  Score=60.71  Aligned_cols=101  Identities=22%  Similarity=0.207  Sum_probs=55.3

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCC--CCCCcCChhhhccCCCCEEEccCCCCcC--cCchhHhcCCCCcc
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCN--RLSGSIPSTIFTIYTLKNVSLGKNKLSG--QIPTNICSNLPFLE  157 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~  157 (253)
                      .+..+++.+..++  .-..+..+++|+.|.++.|  .+.+.++.-....++|++|++++|++..  ++.+  ...+.+|.
T Consensus        44 ~le~ls~~n~glt--t~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l~nL~  119 (260)
T KOG2739|consen   44 ELELLSVINVGLT--TLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKELENLK  119 (260)
T ss_pred             chhhhhhhcccee--ecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhhcchh
Confidence            4455555555544  1123555667777777777  4444444444455777777777777651  1111  13456666


Q ss_pred             EEEeecCcCCCCCC---ccCCCCCCcceEeee
Q 025426          158 FLSLSLNMFHGGIP---STLSNCTYLRTLSLA  186 (253)
Q Consensus       158 ~L~l~~n~~~~~~~---~~~~~l~~L~~L~L~  186 (253)
                      .|++.+|..+..--   ..|.-+++|++|+-.
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~  151 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC  151 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence            77777776653111   224445666665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.37  E-value=0.00025  Score=57.12  Aligned_cols=159  Identities=18%  Similarity=0.176  Sum_probs=102.6

Q ss_pred             CeEEEEEeCCCCccccCCcc----CCCCCCCCEEECCCCCCCCc----CChhh---------hccCCCCEEEccCCCCcC
Q 025426           81 HRVTVLNISSLNLRGTIPSQ----LGNLSSLQSLNLSCNRLSGS----IPSTI---------FTIYTLKNVSLGKNKLSG  143 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~----~~~l~~L~~L~l~~n~l~~~----~~~~l---------~~l~~L~~L~l~~n~l~~  143 (253)
                      ++++..+|++|.+....|+.    ++.-..|.+|.+++|.+..+    +..++         ..-|.|++.....|++. 
T Consensus        92 p~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle-  170 (388)
T COG5238          92 PRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE-  170 (388)
T ss_pred             CcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc-
Confidence            67889999999887665544    34557788999999987521    22222         23477888888888876 


Q ss_pred             cCchh----HhcCCCCccEEEeecCcCCCCCC-----ccCCCCCCcceEeeecCcCccc----CCccccCCCCCCeeecc
Q 025426          144 QIPTN----ICSNLPFLEFLSLSLNMFHGGIP-----STLSNCTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIG  210 (253)
Q Consensus       144 ~~~~~----~~~~l~~L~~L~l~~n~~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~  210 (253)
                      ..+..    .+.....|+++-+..|.|.....     ..+..+.+|+.||+..|-++..    +...++.++.|+.|.+.
T Consensus       171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ln  250 (388)
T COG5238         171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLN  250 (388)
T ss_pred             cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcccc
Confidence            44432    23444678888888887753211     1234457888888888887633    22345667778888888


Q ss_pred             cCcCcccCChh----hc--CCCCCCEEeccCCCCce
Q 025426          211 ANRLQGEIPRE----FG--NLTELEQFSLPTNNLQV  240 (253)
Q Consensus       211 ~n~l~~~~~~~----~~--~l~~L~~L~l~~n~l~~  240 (253)
                      .|-++....+.    |.  ..++|..|...+|.+.+
T Consensus       251 DClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~  286 (388)
T COG5238         251 DCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG  286 (388)
T ss_pred             chhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence            88776433322    22  34667777777776543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.95  E-value=3.6e-05  Score=62.08  Aligned_cols=99  Identities=26%  Similarity=0.246  Sum_probs=60.2

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchh-HhcCCCCccEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTN-ICSNLPFLEFL  159 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L  159 (253)
                      .+++.|+.-++++.++.-  ...++.|+.|.|+-|+++.  -..+..+.+|++|+|..|.|. ++.+- -+.++++|+.|
T Consensus        19 ~~vkKLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIss--L~pl~rCtrLkElYLRkN~I~-sldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISS--LAPLQRCTRLKELYLRKNCIE-SLDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCccHHHH--HHhcccceeEEeecccccc--chhHHHHHHHHHHHHHhcccc-cHHHHHHHhcCchhhhH
Confidence            456777777777764322  2456777777777777762  233566777777777777776 44321 12567777777


Q ss_pred             EeecCcCCCCCCc-----cCCCCCCcceEe
Q 025426          160 SLSLNMFHGGIPS-----TLSNCTYLRTLS  184 (253)
Q Consensus       160 ~l~~n~~~~~~~~-----~~~~l~~L~~L~  184 (253)
                      .|..|..-+..+.     .+.-+|+|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            7777766544332     234456666554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.62  E-value=0.00074  Score=32.69  Aligned_cols=21  Identities=33%  Similarity=0.346  Sum_probs=12.3

Q ss_pred             CCCEEeccCCCCceecchhhhh
Q 025426          227 ELEQFSLPTNNLQVMILNFLQF  248 (253)
Q Consensus       227 ~L~~L~l~~n~l~~~~p~~~~~  248 (253)
                      +|++||+++|+++ .+|++|++
T Consensus         1 ~L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEES-EEGTTTTT
T ss_pred             CccEEECCCCcCE-eCChhhcC
Confidence            3566677777666 44444554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.73  E-value=0.0042  Score=29.98  Aligned_cols=19  Identities=37%  Similarity=0.637  Sum_probs=10.0

Q ss_pred             CCeeecccCcCcccCChhhc
Q 025426          204 LKVLYIGANRLQGEIPREFG  223 (253)
Q Consensus       204 L~~L~l~~n~l~~~~~~~~~  223 (253)
                      |++|++++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            555566666555 4444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=95.14  E-value=0.022  Score=28.54  Aligned_cols=21  Identities=29%  Similarity=0.532  Sum_probs=13.5

Q ss_pred             CCCCEEEccCCCCcCcCchhHh
Q 025426          129 YTLKNVSLGKNKLSGQIPTNIC  150 (253)
Q Consensus       129 ~~L~~L~l~~n~l~~~~~~~~~  150 (253)
                      .+|++|++++|.+. .+|+..|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666677777666 6666554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=95.14  E-value=0.022  Score=28.54  Aligned_cols=21  Identities=29%  Similarity=0.532  Sum_probs=13.5

Q ss_pred             CCCCEEEccCCCCcCcCchhHh
Q 025426          129 YTLKNVSLGKNKLSGQIPTNIC  150 (253)
Q Consensus       129 ~~L~~L~l~~n~l~~~~~~~~~  150 (253)
                      .+|++|++++|.+. .+|+..|
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHHHc
Confidence            45666677777666 6666554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.10  E-value=0.015  Score=26.04  Aligned_cols=13  Identities=31%  Similarity=0.698  Sum_probs=4.6

Q ss_pred             CCCEEEccCCCCc
Q 025426          130 TLKNVSLGKNKLS  142 (253)
Q Consensus       130 ~L~~L~l~~n~l~  142 (253)
                      +|+.|++++|+++
T Consensus         2 ~L~~L~l~~n~L~   14 (17)
T PF13504_consen    2 NLRTLDLSNNRLT   14 (17)
T ss_dssp             T-SEEEETSS--S
T ss_pred             ccCEEECCCCCCC
Confidence            3444444444443

...

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.48  E-value=0.036  Score=27.74  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=15.3

Q ss_pred             CCCCEEeccCCCCceecchhhh
Q 025426          226 TELEQFSLPTNNLQVMILNFLQ  247 (253)
Q Consensus       226 ~~L~~L~l~~n~l~~~~p~~~~  247 (253)
                      ++|+.|++++|+++.+++..|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            5677777777777766666554

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.48  E-value=0.036  Score=27.74  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=15.3

Q ss_pred             CCCCEEeccCCCCceecchhhh
Q 025426          226 TELEQFSLPTNNLQVMILNFLQ  247 (253)
Q Consensus       226 ~~L~~L~l~~n~l~~~~p~~~~  247 (253)
                      ++|+.|++++|+++.+++..|.
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHcc
Confidence            5677777777777766666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=94.04  E-value=0.011  Score=52.27  Aligned_cols=62  Identities=26%  Similarity=0.196  Sum_probs=28.1

Q ss_pred             CCCCCEEECCCCC-CCCcCChhhhc-cCCCCEEEccCCC-CcCcCchhHhcCCCCccEEEeecCc
Q 025426          104 LSSLQSLNLSCNR-LSGSIPSTIFT-IYTLKNVSLGKNK-LSGQIPTNICSNLPFLEFLSLSLNM  165 (253)
Q Consensus       104 l~~L~~L~l~~n~-l~~~~~~~l~~-l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~  165 (253)
                      +++|+.++++.+. ++...-..+.. +++|++|.+.++. ++...-..+...+++|++|+++++.
T Consensus       242 ~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             cCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            4455555555554 33222222222 4555555555444 3433333333445555555555554

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.10  E-value=0.00048  Score=60.98  Aligned_cols=108  Identities=22%  Similarity=0.243  Sum_probs=52.0

Q ss_pred             EEEEEeCCCCcccc----CCccCCCCCCCCEEECCCCCCCCcCChh----hhcc-CCCCEEEccCCCCcCc----CchhH
Q 025426           83 VTVLNISSLNLRGT----IPSQLGNLSSLQSLNLSCNRLSGSIPST----IFTI-YTLKNVSLGKNKLSGQ----IPTNI  149 (253)
Q Consensus        83 l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~l~~n~l~~~----~~~~~  149 (253)
                      +..+.+.+|.+.+.    +...+...+.|+.|++++|.+...-...    +... ..+++|++..|.+++.    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            55666777766533    2233455566777777777665221111    1111 3455566666655532    22222


Q ss_pred             hcCCCCccEEEeecCcCCC----CCCccCC----CCCCcceEeeecCcCc
Q 025426          150 CSNLPFLEFLSLSLNMFHG----GIPSTLS----NCTYLRTLSLAYNDFS  191 (253)
Q Consensus       150 ~~~l~~L~~L~l~~n~~~~----~~~~~~~----~l~~L~~L~L~~n~l~  191 (253)
                       .....++.++++.|.+..    .++..+.    ...++++|.+.+|.++
T Consensus       169 -~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t  217 (478)
T KOG4308|consen  169 -EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVT  217 (478)
T ss_pred             -hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence             224555566666665421    1112222    2445556666665554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.96  E-value=0.0095  Score=46.07  Aligned_cols=82  Identities=15%  Similarity=0.102  Sum_probs=50.7

Q ss_pred             CCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCC-ccC-CCCCCcceEeeecC-cCcccCCccccCCCCCC
Q 025426          129 YTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIP-STL-SNCTYLRTLSLAYN-DFSGAVPREIGNLTKLK  205 (253)
Q Consensus       129 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~-~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~  205 (253)
                      ..++.+|-++..|..+.-+.+ ..+++++.|.+.++.--+... +-+ ...++|+.|++++| +|++..-..+..+++|+
T Consensus       101 ~~IeaVDAsds~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr  179 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLR  179 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhH
Confidence            457788888888875544555 677778787777775321111 111 13467778888766 45544455566677777


Q ss_pred             eeeccc
Q 025426          206 VLYIGA  211 (253)
Q Consensus       206 ~L~l~~  211 (253)
                      .|.+.+
T Consensus       180 ~L~l~~  185 (221)
T KOG3864|consen  180 RLHLYD  185 (221)
T ss_pred             HHHhcC
Confidence            777654

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=92.30  E-value=0.026  Score=49.96  Aligned_cols=110  Identities=21%  Similarity=0.108  Sum_probs=51.8

Q ss_pred             CCCCCEEECCCCCCCCc--CChhhhccCCCCEEEccCC-CCcCcCc---hhHhcCCCCccEEEeecCc-CCCCCCccCC-
Q 025426          104 LSSLQSLNLSCNRLSGS--IPSTIFTIYTLKNVSLGKN-KLSGQIP---TNICSNLPFLEFLSLSLNM-FHGGIPSTLS-  175 (253)
Q Consensus       104 l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~l~~n-~l~~~~~---~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~-  175 (253)
                      .+.|+.+.+..+.-...  ........++|+.|+++++ ......+   ......+.+|+.++++++. ++...-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45566666655532212  2233445566666666652 1110111   1122344566666666665 4432222222 


Q ss_pred             CCCCcceEeeecCc-CcccCC-ccccCCCCCCeeecccCc
Q 025426          176 NCTYLRTLSLAYND-FSGAVP-REIGNLTKLKVLYIGANR  213 (253)
Q Consensus       176 ~l~~L~~L~L~~n~-l~~~~p-~~l~~l~~L~~L~l~~n~  213 (253)
                      .+++|++|.+.++. +++..- .....++.|+.|+++++.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            25566666655554 332211 222345566666666655

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.21  E-value=0.0026  Score=50.33  Aligned_cols=83  Identities=28%  Similarity=0.267  Sum_probs=43.8

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ..+++.||++.|++. .....|+.+..+..|+++.|.+. ..|..+.+...++.++..+|.++ ..|.+. ...++++++
T Consensus        41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~-~k~~~~k~~  116 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQ-KKEPHPKKN  116 (326)
T ss_pred             cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccc-cccCCcchh
Confidence            345556666666554 33333444455555555555554 45555555555555555555555 455444 455555555


Q ss_pred             EeecCcC
Q 025426          160 SLSLNMF  166 (253)
Q Consensus       160 ~l~~n~~  166 (253)
                      ++-+|.+
T Consensus       117 e~k~~~~  123 (326)
T KOG0473|consen  117 EQKKTEF  123 (326)
T ss_pred             hhccCcc
Confidence            5555543

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=92.12  E-value=0.0026  Score=50.28  Aligned_cols=89  Identities=16%  Similarity=0.188  Sum_probs=58.8

Q ss_pred             ccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCC
Q 025426           99 SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT  178 (253)
Q Consensus        99 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  178 (253)
                      ..+..+...+.||++.|.+- .+-..++.+..|..|+++.|.+. .+|... .....+..+++..|... ..|.++...+
T Consensus        36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~-~q~~e~~~~~~~~n~~~-~~p~s~~k~~  111 (326)
T KOG0473|consen   36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDA-KQQRETVNAASHKNNHS-QQPKSQKKEP  111 (326)
T ss_pred             hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhH-HHHHHHHHHHhhccchh-hCCccccccC
Confidence            34556677777888777664 34445556666777777777776 666655 55555666666666654 6677777777


Q ss_pred             CcceEeeecCcCc
Q 025426          179 YLRTLSLAYNDFS  191 (253)
Q Consensus       179 ~L~~L~L~~n~l~  191 (253)
                      .++++++-.|.+.
T Consensus       112 ~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  112 HPKKNEQKKTEFF  124 (326)
T ss_pred             CcchhhhccCcch
Confidence            7777777777654

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.94  E-value=0.001  Score=58.92  Aligned_cols=162  Identities=24%  Similarity=0.233  Sum_probs=109.1

Q ss_pred             CCCeEEEEEeCCCCccccCCc----cCCCC-CCCCEEECCCCCCCCc----CChhhhccCCCCEEEccCCCCcC----cC
Q 025426           79 HSHRVTVLNISSLNLRGTIPS----QLGNL-SSLQSLNLSCNRLSGS----IPSTIFTIYTLKNVSLGKNKLSG----QI  145 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~----~~~~l-~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~----~~  145 (253)
                      ....+..|++++|.+.+....    .+... ..++.|++..|.++..    +...+.....++.++++.|.+..    .+
T Consensus       113 t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l  192 (478)
T KOG4308|consen  113 TLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVL  192 (478)
T ss_pred             ccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHH
Confidence            345688899999998743222    22222 4577788888887743    44556667789999999998741    12


Q ss_pred             chhHh---cCCCCccEEEeecCcCCCCCC----ccCCCCCC-cceEeeecCcCccc----CCccccCC-CCCCeeecccC
Q 025426          146 PTNIC---SNLPFLEFLSLSLNMFHGGIP----STLSNCTY-LRTLSLAYNDFSGA----VPREIGNL-TKLKVLYIGAN  212 (253)
Q Consensus       146 ~~~~~---~~l~~L~~L~l~~n~~~~~~~----~~~~~l~~-L~~L~L~~n~l~~~----~p~~l~~l-~~L~~L~l~~n  212 (253)
                      +..+-   ....++++|.+.+|.++....    ..+...+. +..+++..|.+.+.    ..+.+... ..++.++++.|
T Consensus       193 ~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~n  272 (478)
T KOG4308|consen  193 SQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRN  272 (478)
T ss_pred             hhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcC
Confidence            22221   246779999999998863221    23344455 66799999988744    22334444 67899999999


Q ss_pred             cCccc----CChhhcCCCCCCEEeccCCCCce
Q 025426          213 RLQGE----IPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       213 ~l~~~----~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      .+++.    +...+..++.++++.+++|.+.+
T Consensus       273 si~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  273 SITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             CccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            98864    34556677889999999998864

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=91.70  E-value=0.075  Score=25.98  Aligned_cols=20  Identities=20%  Similarity=0.190  Sum_probs=9.4

Q ss_pred             CCCCEEeccCCCCceecchh
Q 025426          226 TELEQFSLPTNNLQVMILNF  245 (253)
Q Consensus       226 ~~L~~L~l~~n~l~~~~p~~  245 (253)
                      ++|+.|++++|.|++.-...
T Consensus         2 ~~L~~L~l~~n~i~~~g~~~   21 (24)
T PF13516_consen    2 PNLETLDLSNNQITDEGASA   21 (24)
T ss_dssp             TT-SEEE-TSSBEHHHHHHH
T ss_pred             CCCCEEEccCCcCCHHHHHH
Confidence            45556666666655444333

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.80  E-value=0.026  Score=43.72  Aligned_cols=82  Identities=20%  Similarity=0.128  Sum_probs=49.9

Q ss_pred             CCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCc-CchhHhcCCCCccEEEeecCc-CCCCCCccCCCCCCcceE
Q 025426          106 SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQ-IPTNICSNLPFLEFLSLSLNM-FHGGIPSTLSNCTYLRTL  183 (253)
Q Consensus       106 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L  183 (253)
                      .++.++-++..+.++--..+..++.++.|.+.++.--+. --+.+..-.++|+.|++++|. ||...-..+..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            456677777766655555566677777777777653211 111121234678888888774 665555566677777777


Q ss_pred             eeec
Q 025426          184 SLAY  187 (253)
Q Consensus       184 ~L~~  187 (253)
                      .+.+
T Consensus       182 ~l~~  185 (221)
T KOG3864|consen  182 HLYD  185 (221)
T ss_pred             HhcC
Confidence            7654

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=85.70  E-value=0.36  Score=41.65  Aligned_cols=132  Identities=23%  Similarity=0.175  Sum_probs=58.6

Q ss_pred             CCCCCEEECCCCCCCC-cCChhh-hccCCCCEEEccCCCC-cCcCchhHhcCCCCccEEEeecCcCCC--CCCccCCCCC
Q 025426          104 LSSLQSLNLSCNRLSG-SIPSTI-FTIYTLKNVSLGKNKL-SGQIPTNICSNLPFLEFLSLSLNMFHG--GIPSTLSNCT  178 (253)
Q Consensus       104 l~~L~~L~l~~n~l~~-~~~~~l-~~l~~L~~L~l~~n~l-~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~  178 (253)
                      +..|+.++.+++...+ ..-.++ .+.++|+.|.++.++. +..--..+-.+.+.|+.+++.++....  .+...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            4455666665554311 111122 2245666666666552 211111112345556666666554321  1222223455


Q ss_pred             CcceEeeecCcCc-cc----CCccccCCCCCCeeecccCcCc-ccCChhhcCCCCCCEEeccC
Q 025426          179 YLRTLSLAYNDFS-GA----VPREIGNLTKLKVLYIGANRLQ-GEIPREFGNLTELEQFSLPT  235 (253)
Q Consensus       179 ~L~~L~L~~n~l~-~~----~p~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~  235 (253)
                      .|+.+.++.+..- +.    ....-.....++.+.+++++.. +..-+.+..+++|+.+++-+
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~  435 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELID  435 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeec
Confidence            6666666655321 11    0111223445666666666532 23334455566666655544

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=84.39  E-value=1.1  Score=22.51  Aligned_cols=16  Identities=31%  Similarity=0.611  Sum_probs=10.3

Q ss_pred             CCCCEEeccCCCCcee
Q 025426          226 TELEQFSLPTNNLQVM  241 (253)
Q Consensus       226 ~~L~~L~l~~n~l~~~  241 (253)
                      .+|+.|+++.|+|+.+
T Consensus         2 ~~L~~L~L~~NkI~~I   17 (26)
T smart00365        2 TNLEELDLSQNKIKKI   17 (26)
T ss_pred             CccCEEECCCCcccee
Confidence            4567777777776543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=84.34  E-value=0.69  Score=23.20  Aligned_cols=17  Identities=29%  Similarity=0.718  Sum_probs=10.6

Q ss_pred             CCCEEEccCCCCcCcCch
Q 025426          130 TLKNVSLGKNKLSGQIPT  147 (253)
Q Consensus       130 ~L~~L~l~~n~l~~~~~~  147 (253)
                      +|+.|++++|+++ ++|+
T Consensus         3 ~L~~L~vs~N~Lt-~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLT-SLPE   19 (26)
T ss_pred             ccceeecCCCccc-cCcc
Confidence            4666666666666 5554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	253
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		4e-14
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		4e-14
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		3e-13
2o6r_A	177	Structural Diversity Of The Hagfish Variable Lympho		2e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 75  ACDVHSHRVTVLNISSLNLRGTIPXXXXXXXXXXXXXXXXXXXXGSIP-STIFTIYTLKN 133
           ACD     +T L++S  +  G +P                    G +P  T+  +  LK 
Sbjct: 289 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGI-PSTLSNCT-YLRTLSLAYNDFS 191
           + L  N+ SG++P ++ +    L  L LS N F G I P+   N    L+ L L  N F+
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 192 GAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248
           G +P  + N ++L  L++  N L G IP   G+L++L    L  N L+  I   L +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 461

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/177 (28%), Positives = 80/177 (45%), Gaps = 7/177 (3%)
Query: 75  ACDVHSHRVTVLNISSLNLRGTIPXXXXXXXXXXXXXXXXXXXXGSIP-STIFTIYTLKN 133
           ACD     +T L++S  +  G +P                    G +P  T+  +  LK 
Sbjct: 292 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGI-PSTLSNCT-YLRTLSLAYNDFS 191
           + L  N+ SG++P ++ +    L  L LS N F G I P+   N    L+ L L  N F+
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 192 GAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248
           G +P  + N ++L  L++  N L G IP   G+L++L    L  N L+  I   L +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMY 464

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 61/195 (31%), Positives = 89/195 (45%), Gaps = 31/195 (15%)
Query: 39  DRDALLALKAHITHDPTNFLAKNWNTSTPVCN--WTGVACDV--HSHRVTVLNISSLNLR 94
           D+ ALL +K  +  +PT     +W  +T  CN  W GV CD    ++RV  L++S LNL 
Sbjct: 7   DKQALLQIKKDL-GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 95  GTIPXXXXXXXXXXXXXXXXXXXXGSIPSTIFTIYTLKNVSLGK-NKLSGQIPTNICSNL 153
              P                      IPS++  +  L  + +G  N L G IP  I + L
Sbjct: 64  KPYP----------------------IPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKL 100
Query: 154 PFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANR 213
             L +L ++     G IP  LS    L TL  +YN  SG +P  I +L  L  +    NR
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160
Query: 214 LQGEIPREFGNLTEL 228
           + G IP  +G+ ++L
Sbjct: 161 ISGAIPDSYGSFSKL 175

>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B61 Length = 177

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 45/95 (47%), Gaps = 3/95 (3%)
Query: 145 IPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKL 204
           +PT I S+   LE  S  L     G+   L   T L  LSL+ N            LTKL
Sbjct: 22  VPTGIPSSATRLELESNKLQSLPHGVFDKL---TQLTKLSLSQNQIQSLPDGVFDKLTKL 78
Query: 205 KVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
            +LY+  N+LQ      F  LT+L++ +L TN L+
Sbjct: 79  TILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-49
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-37
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-30
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-48
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-43
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-41
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-40
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	7e-39
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-35
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-33
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-32
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-28
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-14
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-33
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-25
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-23
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-20
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-28
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-18
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-16
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-08
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-27
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-21
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-13
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-21
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-20
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-18
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-12
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-20
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-18
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-17
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-16
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-12
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	9e-17
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-16
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-13
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-12
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-17
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	9e-16
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-13
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-12
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-12
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-11
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-13
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-16
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-14
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	5e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-15
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-14
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-14
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-13
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-12
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-15
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-14
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-13
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-10
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-09
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-07
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-15
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-14
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-09
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-12
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-10
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-07
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-14
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-13
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-12
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-09
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	6e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-13
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-05
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-14
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-13
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-11
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-11
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-09
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	7e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-08
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-13
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-09
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-12
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-12
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-12
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-11
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-10
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-09
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-06
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-11
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-09
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-11
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-10
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-08
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	7e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-10
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-10
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-06
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	3e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-09
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-07
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-06
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-07
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-07
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	7e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-06
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-05
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	2e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  164 bits (418), Expect = 1e-49
 Identities = 65/209 (31%), Positives = 91/209 (43%), Gaps = 36/209 (17%)

Query: 38  TDRDALLALKAHITHDPTNFLAKNWNTSTPVCN--WTGVACDV--HSHRVTVLNISSLNL 93
            D+ ALL +K  +  +PT     +W  +T  CN  W GV CD    ++RV  L++S LNL
Sbjct: 6   QDKQALLQIKKDLG-NPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 94  RGT--IPSQLGNLSSLQSLNLS-CNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNIC 150
                IPS L NL  L  L +   N L G IP  I                         
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI------------------------- 97

Query: 151 SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIG 210
           + L  L +L ++     G IP  LS    L TL  +YN  SG +P  I +L  L  +   
Sbjct: 98  AKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD 157

Query: 211 ANRLQGEIPREFGNLTELEQF-SLPTNNL 238
            NR+ G IP  +G+ ++L    ++  N L
Sbjct: 158 GNRISGAIPDSYGSFSKLFTSMTISRNRL 186

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  143 bits (364), Expect = 1e-41
 Identities = 44/157 (28%), Positives = 75/157 (47%), Gaps = 4/157 (2%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNV-SLGKNKLS 142
             L+ S   L GT+P  + +L +L  +    NR+SG+IP +  +   L    ++ +N+L+
Sbjct: 128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLT 187

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
           G+IP    +NL  L F+ LS NM  G       +    + + LA N  +  +  ++G   
Sbjct: 188 GKIPPTF-ANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK 244

Query: 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
            L  L +  NR+ G +P+    L  L   ++  NNL 
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  132 bits (334), Expect = 3e-37
 Identities = 42/155 (27%), Positives = 63/155 (40%), Gaps = 5/155 (3%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSL-QSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
             +      + G IP   G+ S L  S+ +S NRL+G IP T   +  L  V L +N L 
Sbjct: 152 VGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLE 210

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
           G        +    + + L+ N     +   +     L  L L  N   G +P+ +  L 
Sbjct: 211 GDASVLF-GSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLK 268

Query: 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237
            L  L +  N L GEIP+  GNL   +  +   N 
Sbjct: 269 FLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  114 bits (287), Expect = 2e-30
 Identities = 37/137 (27%), Positives = 60/137 (43%), Gaps = 4/137 (2%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
            T + IS   L G IP    NL+ L  ++LS N L G       +    + + L KN L+
Sbjct: 176 FTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
             +          L  L L  N  +G +P  L+   +L +L++++N+  G +P + GNL 
Sbjct: 235 FDLGKV--GLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQ 291

Query: 203 KLKVLYIGANRLQGEIP 219
           +  V     N+     P
Sbjct: 292 RFDVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 73.7 bits (182), Expect = 1e-15
 Identities = 23/95 (24%), Positives = 45/95 (47%), Gaps = 5/95 (5%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             ++++  +L   +   +G   +L  L+L  NR+ G++P  +  +  L ++++  N L G
Sbjct: 224 QKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
           +IP     NL   +  + + N    G P  L  CT
Sbjct: 283 EIPQG--GNLQRFDVSAYANNKCLCGSP--LPACT 313

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  168 bits (429), Expect = 3e-48
 Identities = 56/224 (25%), Positives = 97/224 (43%), Gaps = 16/224 (7%)

Query: 27  AATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVL 86
           +   + + S   +   L++ K  +     N L  +W+++   C + GV C     +VT +
Sbjct: 1   SFQASPSQSLYREIHQLISFKDVL--PDKNLLP-DWSSNKNPCTFDGVTCR--DDKVTSI 55

Query: 87  NISSLNLR---GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           ++SS  L      + S L +L+ L+SL LS + ++GS+        +L ++ L +N LSG
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSLDLSRNSLSG 114

Query: 144 QIPTNIC-SNLPFLEFLSLSLNMFHGGIP-STLSNCTYLRTLSLAYNDFSGAVPREI--- 198
            + T     +   L+FL++S N        S       L  L L+ N  SGA        
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLS 174

Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI 242
               +LK L I  N++ G++         LE   + +NN    I
Sbjct: 175 DGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGI 216

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  154 bits (392), Expect = 3e-43
 Identities = 61/155 (39%), Positives = 83/155 (53%), Gaps = 1/155 (0%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             L + +    G IP  L N S L SL+LS N LSG+IPS++ ++  L+++ L  N L G
Sbjct: 397 QELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEG 456

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
           +IP  +   +  LE L L  N   G IPS LSNCT L  +SL+ N  +G +P+ IG L  
Sbjct: 457 EIPQELM-YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN 515

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           L +L +  N   G IP E G+   L    L TN  
Sbjct: 516 LAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLF 550

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  153 bits (389), Expect = 8e-43
 Identities = 52/162 (32%), Positives = 82/162 (50%), Gaps = 4/162 (2%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK 138
               +  L+IS   L G     +   + L+ LN+S N+  G IP       +L+ +SL +
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLK--SLQYLSLAE 278

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE- 197
           NK +G+IP  +      L  L LS N F+G +P    +C+ L +L+L+ N+FSG +P + 
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338

Query: 198 IGNLTKLKVLYIGANRLQGEIPREFGNLT-ELEQFSLPTNNL 238
           +  +  LKVL +  N   GE+P    NL+  L    L +NN 
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  150 bits (381), Expect = 1e-41
 Identities = 61/159 (38%), Positives = 88/159 (55%), Gaps = 3/159 (1%)

Query: 84  TVLNISSLNLRGTIP-SQLGNLSSLQSLNLSCNRLSGSIPSTIFTI-YTLKNVSLGKNKL 141
             L +SS N  G +P   L  +  L+ L+LS N  SG +P ++  +  +L  + L  N  
Sbjct: 321 ESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNF 380

Query: 142 SGQIPTNICSN-LPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGN 200
           SG I  N+C N    L+ L L  N F G IP TLSNC+ L +L L++N  SG +P  +G+
Sbjct: 381 SGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS 440

Query: 201 LTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           L+KL+ L +  N L+GEIP+E   +  LE   L  N+L 
Sbjct: 441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  147 bits (374), Expect = 1e-40
 Identities = 59/161 (36%), Positives = 80/161 (49%), Gaps = 3/161 (1%)

Query: 80  SHRVTVLNISSLNLRGTIPSQLGN--LSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLG 137
           S  +  L++SS N  G I   L     ++LQ L L  N  +G IP T+     L ++ L 
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426

Query: 138 KNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE 197
            N LSG IP+++  +L  L  L L LNM  G IP  L     L TL L +ND +G +P  
Sbjct: 427 FNYLSGTIPSSLG-SLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG 485

Query: 198 IGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           + N T L  + +  NRL GEIP+  G L  L    L  N+ 
Sbjct: 486 LSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSF 526

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  147 bits (373), Expect = 1e-40
 Identities = 56/163 (34%), Positives = 82/163 (50%), Gaps = 6/163 (3%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK 138
               +  L++SS N    IP  LG+ S+LQ L++S N+LSG     I T   LK +++  
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLS-NCTYLRTLSLAYNDFSGAVPRE 197
           N+  G IP     +   L++LSL+ N F G IP  LS  C  L  L L+ N F GAVP  
Sbjct: 257 NQFVGPIPPLPLKS---LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPF 313

Query: 198 IGNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
            G+ + L+ L + +N   GE+P +    +  L+   L  N   
Sbjct: 314 FGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS 356

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  147 bits (373), Expect = 1e-40
 Identities = 57/161 (35%), Positives = 79/161 (49%), Gaps = 1/161 (0%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             L++S   L GTIPS LG+LS L+ L L  N L G IP  +  + TL+ + L  N L+G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
           +IP+ + SN   L ++SLS N   G IP  +     L  L L+ N FSG +P E+G+   
Sbjct: 481 EIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILN 244
           L  L +  N   G IP      +     +       V I N
Sbjct: 540 LIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKN 580

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  142 bits (360), Expect = 7e-39
 Identities = 50/159 (31%), Positives = 79/159 (49%), Gaps = 4/159 (2%)

Query: 84  TVLNISSLNLRGTIPSQL-GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
             L+++     G IP  L G   +L  L+LS N   G++P    +   L++++L  N  S
Sbjct: 272 QYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS 331

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTY-LRTLSLAYNDFSGAVPREIGN- 200
           G++P +    +  L+ L LS N F G +P +L+N +  L TL L+ N+FSG +   +   
Sbjct: 332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQN 391

Query: 201 -LTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
               L+ LY+  N   G+IP    N +EL    L  N L
Sbjct: 392 PKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYL 430

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  133 bits (336), Expect = 1e-35
 Identities = 56/173 (32%), Positives = 80/173 (46%), Gaps = 10/173 (5%)

Query: 84  TVLNISSLNLRGTIP-SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNV---SLGKN 139
             LN+SS  L      S    L+SL+ L+LS N +SG+             +   ++  N
Sbjct: 129 KFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGN 188

Query: 140 KLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG 199
           K+SG +     S    LEFL +S N F  GIP  L +C+ L+ L ++ N  SG   R I 
Sbjct: 189 KISGDVD---VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAIS 244

Query: 200 NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSS 252
             T+LK+L I +N+  G IP     L  L+  SL  N     I +FL     +
Sbjct: 245 TCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDT 295

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  125 bits (317), Expect = 4e-33
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 3/165 (1%)

Query: 86  LNISSLNLRGTIPSQLGNLSSLQSLNLSCN--RLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             I++  + G     + N    +  + + N     G     +  + T    ++      G
Sbjct: 563 GKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGG 622

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
                   N   + FL +S NM  G IP  + +  YL  L+L +ND SG++P E+G+L  
Sbjct: 623 HTSPTF-DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248
           L +L + +N+L G IP+    LT L +  L  NNL   I    QF
Sbjct: 682 LNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  122 bits (309), Expect = 5e-32
 Identities = 40/177 (22%), Positives = 69/177 (38%), Gaps = 21/177 (11%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             +++S+  L G IP  +G L +L  L LS N  SG+IP+ +    +L  + L  N  +G
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNG 552

Query: 144 QIPTNIC-------------------SNLPFLEFLSLSLNM--FHGGIPSTLSNCTYLRT 182
            IP  +                     N    +    + N+  F G     L+  +    
Sbjct: 553 TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612

Query: 183 LSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
            ++    + G       N   +  L +  N L G IP+E G++  L   +L  N++ 
Sbjct: 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  111 bits (279), Expect = 5e-28
 Identities = 40/114 (35%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
               NI+S    G       N  S+  L++S N LSG IP  I ++  L  ++LG N +S
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDIS 669

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPR 196
           G IP  +  +L  L  L LS N   G IP  +S  T L  + L+ N+ SG +P 
Sbjct: 670 GSIPDEV-GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPE 722

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 71.1 bits (175), Expect = 3e-14
 Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 1/76 (1%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
            +LN+   ++ G+IP ++G+L  L  L+LS N+L G IP  +  +  L  + L  N LSG
Sbjct: 659 FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718

Query: 144 QIPT-NICSNLPFLEF 158
            IP        P  +F
Sbjct: 719 PIPEMGQFETFPPAKF 734

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  125 bits (316), Expect = 5e-33
 Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 16/222 (7%)

Query: 26  IAATTATTSSTITDRDALLALKAHI------THDPTNFLAKNWNTSTPVCNWT---GVAC 76
           +    + T+  I D  AL  +   +                NWN +  +  W    GV+ 
Sbjct: 18  VPIKLSRTAEYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSL 77

Query: 77  DVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG----SIPSTIFTIYTLK 132
           + +  RVT L++      G +P  +G L+ L+ L L  +          P  I    + +
Sbjct: 78  NSNG-RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 133 NVSLGKNKLSGQIPTNICS-NLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS 191
                +              +   L    ++ +     I  +         +    N+ +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT 196

Query: 192 GAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSL 233
             V + +  LTKL+  Y+G +    E   E       E    
Sbjct: 197 F-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQ 237

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  102 bits (256), Expect = 6e-25
 Identities = 38/185 (20%), Positives = 64/185 (34%), Gaps = 23/185 (12%)

Query: 84  TVLNISSLNLRG-------TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSL 136
           + ++ S   +          +        ++ S+NLS N++S        T   L +++L
Sbjct: 405 SAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINL 464

Query: 137 GKNKLSGQIPTNIC-------SNLPFLEFLSLSLNMFHGGIPS-TLSNCTYLRTLSLAYN 188
             N L+  IP N          N   L  + L  N           +   YL  + L+YN
Sbjct: 465 MGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523

Query: 189 DFSGAVPREIGNLTKLKVLYIG------ANRLQGEIPREFGNLTELEQFSLPTNNLQVMI 242
            FS   P +  N + LK   I        NR   E P        L Q  + +N+++ + 
Sbjct: 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVN 582

Query: 243 LNFLQ 247
                
Sbjct: 583 EKITP 587

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  101 bits (253), Expect = 1e-24
 Identities = 33/179 (18%), Positives = 69/179 (38%), Gaps = 13/179 (7%)

Query: 84  TVLNISSLNLR-GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
            ++ I   NL+   + + L  +  L  L    N+L G +P+   +   L +++L  N+++
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQIT 366

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLS--NCTYLRTLSLAYNDFSGAV------ 194
             IP N C     +E LS + N     IP+     + + +  +  +YN+           
Sbjct: 367 E-IPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP 424

Query: 195 -PREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSS 252
                     +  + +  N++       F   + L   +L  N L  +  N L+  + +
Sbjct: 425 LDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENEN 483

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.0 bits (247), Expect = 7e-24
 Identities = 35/176 (19%), Positives = 63/176 (35%), Gaps = 17/176 (9%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG-------SIPSTIFTIYTLKNVSL 136
           + +N+S+  +           S L S+NL  N L+                 Y L ++ L
Sbjct: 436 SSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDL 495

Query: 137 GKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSL------AYNDF 190
             NKL+        + LP+L  + LS N F    P+   N + L+   +        N  
Sbjct: 496 RFNKLTKLSDDFRATTLPYLVGIDLSYNSF-SKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554

Query: 191 SGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFL 246
               P  I     L  L IG+N ++  +  +      +    +  N    + L+++
Sbjct: 555 LREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYV 607

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 98.2 bits (245), Expect = 1e-23
 Identities = 32/176 (18%), Positives = 60/176 (34%), Gaps = 15/176 (8%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
            +L      L G +P+  G+   L SLNL+ N+++    +       ++N+S   NKL  
Sbjct: 333 GMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHG-------GIPSTLSNCTYLRTLSLAYNDFSGAVPR 196
                   ++  +  +  S N            +  T      + +++L+ N  S     
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE 451

Query: 197 EIGNLTKLKVLYIGANRLQG-------EIPREFGNLTELEQFSLPTNNLQVMILNF 245
                + L  + +  N L         +    F N   L    L  N L  +  +F
Sbjct: 452 LFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDF 507

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 96.6 bits (241), Expect = 5e-23
 Identities = 16/165 (9%), Positives = 48/165 (29%), Gaps = 15/165 (9%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
            +    I+S   + +I            +    N ++  +   +  +  L+   +G +  
Sbjct: 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPF 218

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
             +            E  +      +        N   L  + +        +P  +  L
Sbjct: 219 VAENI------CEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272

Query: 202 TKLKVLYIGANRL--------QGEIPREFGNLTELEQFSLPTNNL 238
            +++++ +  NR           +   +     +++   +  NNL
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNL 317

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 94.3 bits (235), Expect = 3e-22
 Identities = 17/155 (10%), Positives = 42/155 (27%), Gaps = 9/155 (5%)

Query: 86  LNISSLNLRGTIPSQLG--NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
                ++ + T        + S L    ++ +    SI  +         +    N ++ 
Sbjct: 138 KQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF 197

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
            +   +   L  L    +  + F                 +  Y         +  NL  
Sbjct: 198 -VSKAVM-RLTKLRQFYMGNSPFVAENICEAWEN-----ENSEYAQQYKTEDLKWDNLKD 250

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           L  + +       ++P     L E++  ++  N  
Sbjct: 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRG 285

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 90.5 bits (225), Expect = 5e-21
 Identities = 21/163 (12%), Positives = 55/163 (33%), Gaps = 13/163 (7%)

Query: 86  LNISSLNLRGTIPSQLGNLSSLQSLNLSCNRL-SGSIPSTIFTIYTLKNVSLGKNKLSGQ 144
           ++   L       +       +Q + +  N L +  + +++  +  L  +    N+L G+
Sbjct: 286 ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGK 345

Query: 145 IPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPR--EIGNLT 202
           +P     +   L  L+L+ N       +       +  LS A+N     +P   +  +++
Sbjct: 346 LPA-FG-SEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVS 402

Query: 203 KLKVLYIGANRLQG-------EIPREFGNLTELEQFSLPTNNL 238
            +  +    N +          +         +   +L  N +
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 88.2 bits (219), Expect = 4e-20
 Identities = 30/162 (18%), Positives = 48/162 (29%), Gaps = 14/162 (8%)

Query: 87  NISSL--NLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIF--TIYTLKNVSLGKNKLS 142
            ++ +  N          N   L S++L  N+L+  +       T+  L  + L  N  S
Sbjct: 468 MLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFS 526

Query: 143 GQIPTNICS-----NLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE 197
              PT   +                 N      P  ++ C  L  L +  ND    V  +
Sbjct: 527 K-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEK 584

Query: 198 IGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           I     + VL I  N              E   + L  +  Q
Sbjct: 585 I--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 4/97 (4%)

Query: 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG--- 216
           +  L+M+      +L++   +  LSL     SG VP  IG LT+L+VL +G++  +    
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 217 -EIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSS 252
              P+        EQ      + Q   +++      S
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 6/117 (5%)

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG----AVPR 196
           + G  P    ++   +  LSL      G +P  +   T L  L+L  +          P+
Sbjct: 68  MWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPK 127

Query: 197 EIGNLTKLKVLYIGANRLQGEIPREFG--NLTELEQFSLPTNNLQVMILNFLQFYSS 251
            I      +         Q          + ++L +  + ++  Q  I    +    
Sbjct: 128 GISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 9e-10
 Identities = 11/95 (11%), Positives = 24/95 (25%), Gaps = 9/95 (9%)

Query: 86  LNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQI 145
            +          P  +    SL  L +  N +   +   I     +  + +  N      
Sbjct: 547 RDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITP--NISVLDIKDNPNISID 603

Query: 146 PTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL 180
            + +C  +       L  +         +  C  L
Sbjct: 604 LSYVCPYIE-AGMYMLFYDK-----TQDIRGCDAL 632

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 12/65 (18%), Positives = 25/65 (38%)

Query: 182 TLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241
             +   + +       + +  ++  L +      G +P   G LTELE  +L ++  +V 
Sbjct: 61  NFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVN 120

Query: 242 ILNFL 246
              F 
Sbjct: 121 ERLFG 125

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  112 bits (282), Expect = 2e-28
 Identities = 40/249 (16%), Positives = 76/249 (30%), Gaps = 38/249 (15%)

Query: 26  IAATTATTSSTITDRDALLALKAHITHDPTNF---------LAKNWNTSTPVCNW---TG 73
           +      T+  I D  AL A+   +      +          + NWN +  +  W    G
Sbjct: 257 VPIQLKETAEYIKDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPG 316

Query: 74  VACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKN 133
           V  D ++ RVT L+++    +G +P  +G L+ L+ L+   +  + S         T   
Sbjct: 317 VDLD-NNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDM 375

Query: 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFH-----GGIPSTLSNCTYLRTLSLAYN 188
               K+++              L    L  +  +       I            +    N
Sbjct: 376 SEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTN 435

Query: 189 DFSGAVPREIGNLTKLKVLYIGANRLQG-------------------EIPREFGNLTELE 229
             +  + + I  LTKL+++Y   +                            + NL +L 
Sbjct: 436 RITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494

Query: 230 QFSLPTNNL 238
              L     
Sbjct: 495 DVELYNCPN 503

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 96.1 bits (239), Expect = 7e-23
 Identities = 30/173 (17%), Positives = 60/173 (34%), Gaps = 17/173 (9%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLS-------GSIPSTIFTIYTLKNV 134
             + + +S   ++          S + ++ LS N ++                 Y L  +
Sbjct: 674 NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTI 733

Query: 135 SLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAY------N 188
            L  NKL+        + LP+L  + +S N F    P+   N + L+   + +      N
Sbjct: 734 DLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFGIRHQRDAEGN 792

Query: 189 DFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241
                 P  I     L  L IG+N ++ ++  +     +L    +  N    +
Sbjct: 793 RILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNISI 842

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 92.2 bits (229), Expect = 2e-21
 Identities = 32/168 (19%), Positives = 57/168 (33%), Gaps = 18/168 (10%)

Query: 87  NISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIP 146
            I S     +         +  ++ LS N +         T   +  + L  N ++  IP
Sbjct: 655 KIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIP 713

Query: 147 TNIC-------SNLPFLEFLSLSLNMFHGGIPSTL--SNCTYLRTLSLAYNDFSGAVPRE 197
            N          N   L  + L  N     +      +   YL  + ++YN FS   P +
Sbjct: 714 ENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ 771

Query: 198 IGNLTKLKVLYI------GANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
             N ++LK   I        NR+  + P        L Q  + +N+++
Sbjct: 772 PLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR 819

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.3 bits (211), Expect = 4e-19
 Identities = 29/177 (16%), Positives = 60/177 (33%), Gaps = 12/177 (6%)

Query: 84  TVLNISSLNLRGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
            +  +   NL     S  L  +  L  L+   N++         T   L ++ L  N++ 
Sbjct: 551 QIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIE 608

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPST--LSNCTYLRTLSLAYNDFSG-----AVP 195
            +IP + C+    +E L  S N     IP+     +   + ++  +YN         +  
Sbjct: 609 -EIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCS 666

Query: 196 REIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSS 252
            +         + +  N +Q      F   + +    L  N +  +  N L+    +
Sbjct: 667 MDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGN 723

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 84.2 bits (208), Expect = 1e-18
 Identities = 23/162 (14%), Positives = 47/162 (29%), Gaps = 16/162 (9%)

Query: 86  LNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQI 145
             I+       I            +    NR++  I   I  +  L+ +    +  +   
Sbjct: 406 DAINRNPEMKPIKKDSRISLKDTQIGNLTNRIT-FISKAIQRLTKLQIIYFANSPFTYDN 464

Query: 146 PTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLK 205
                      E  +      +     + SN   L  + L        +P  + +L +L+
Sbjct: 465 IAV------DWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 206 VLYIGANRLQG---------EIPREFGNLTELEQFSLPTNNL 238
            L I  NR             +  +     +++ F +  NNL
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 77.6 bits (191), Expect = 2e-16
 Identities = 32/163 (19%), Positives = 56/163 (34%), Gaps = 16/163 (9%)

Query: 87  NISSL--NLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIF--TIYTLKNVSLGKNKLS 142
            ++S+  N          N   L +++L  N+L+ S+       T+  L N+ +  N  S
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS 766

Query: 143 GQIPTNICSNLPFLEFLSLSL------NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPR 196
              PT    N   L+   +        N      P+ ++ C  L  L +  ND    V  
Sbjct: 767 S-FPTQPL-NSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VDE 823

Query: 197 EIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           ++    +L +L I  N              E   + L  +  Q
Sbjct: 824 KL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 53.0 bits (127), Expect = 3e-08
 Identities = 25/86 (29%), Positives = 33/86 (38%), Gaps = 1/86 (1%)

Query: 159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI 218
            +  L+M+       L N   +  LSLA     G VP  IG LT+LKVL  G +      
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETV-S 362

Query: 219 PREFGNLTELEQFSLPTNNLQVMILN 244
            R FG+       S    +   M   
Sbjct: 363 GRLFGDEELTPDMSEERKHRIRMHYK 388

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.3 bits (115), Expect = 9e-07
 Identities = 10/79 (12%), Positives = 24/79 (30%), Gaps = 4/79 (5%)

Query: 86  LNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQI 145
            +     +    P+ +    SL  L +  N +   +   +     L  + +  N      
Sbjct: 787 RDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLTP--QLYILDIADNPNISID 843

Query: 146 PTNICSNLPFLEFLSLSLN 164
            T++C  +       L  +
Sbjct: 844 VTSVCPYIE-AGMYVLLYD 861

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  108 bits (271), Expect = 5e-27
 Identities = 37/202 (18%), Positives = 72/202 (35%), Gaps = 4/202 (1%)

Query: 49  HITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNIS--SLNLRGTIPSQLGNLSS 106
                PT  L      +           +V    +  L++S   L+ +G         +S
Sbjct: 315 KFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374

Query: 107 LQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMF 166
           L+ L+LS N +   + S    +  L+++    + L      ++  +L  L +L +S    
Sbjct: 375 LKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433

Query: 167 HGGIPSTLSNCTYLRTLSLAYNDFSGAV-PREIGNLTKLKVLYIGANRLQGEIPREFGNL 225
                   +  + L  L +A N F     P     L  L  L +   +L+   P  F +L
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSL 493

Query: 226 TELEQFSLPTNNLQVMILNFLQ 247
           + L+  ++  NN   +     +
Sbjct: 494 SSLQVLNMSHNNFFSLDTFPYK 515

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  102 bits (255), Expect = 7e-25
 Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 2/163 (1%)

Query: 79  HSHRVTVLNISSLNLRGTIP-SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLG 137
              ++  L+    NL+     S   +L +L  L++S      +       + +L+ + + 
Sbjct: 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMA 453

Query: 138 KNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE 197
            N        +I + L  L FL LS        P+  ++ + L+ L++++N+F       
Sbjct: 454 GNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 198 IGNLTKLKVLYIGANRLQGEIPREFGNL-TELEQFSLPTNNLQ 239
              L  L+VL    N +     +E  +  + L   +L  N+  
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 556

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 93.6 bits (233), Expect = 6e-22
 Identities = 32/159 (20%), Positives = 59/159 (37%), Gaps = 5/159 (3%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLS 142
             L+IS  + R         LSSL+ L ++ N    +    IFT    L  + L + +L 
Sbjct: 424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 483

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL- 201
              PT   ++L  L+ L++S N F             L+ L  + N    +  +E+ +  
Sbjct: 484 QLSPTAF-NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 542

Query: 202 TKLKVLYIGANRLQGEIPRE--FGNLTELEQFSLPTNNL 238
           + L  L +  N        +     + +  Q  +    +
Sbjct: 543 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERM 581

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 91.6 bits (228), Expect = 2e-21
 Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 6/161 (3%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           + L ++   ++         LSSLQ L      L+      I  + TLK +++  N +  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR----TLSLAYNDFSGAVPREIG 199
                  SNL  LE L LS N       + L     +     +L L+ N  +  +     
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAF 197

Query: 200 NLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
              +L  L +  N     + +     L  LE   L     +
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 83.2 bits (206), Expect = 2e-18
 Identities = 27/135 (20%), Positives = 45/135 (33%), Gaps = 4/135 (2%)

Query: 109 SLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHG 168
           +           IP  +    + KN+ L  N L      +   + P L+ L LS      
Sbjct: 11  TYQCMELNFY-KIPDNLPF--STKNLDLSFNPLRHLGSYSF-FSFPELQVLDLSRCEIQT 66

Query: 169 GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL 228
                  + ++L TL L  N            L+ L+ L      L        G+L  L
Sbjct: 67  IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTL 126

Query: 229 EQFSLPTNNLQVMIL 243
           ++ ++  N +Q   L
Sbjct: 127 KELNVAHNLIQSFKL 141

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.9 bits (182), Expect = 3e-15
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 4/114 (3%)

Query: 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA 193
               +     +IP N+  +    + L LS N        +  +   L+ L L+  +    
Sbjct: 12  YQCMELNFY-KIPDNLPFST---KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 194 VPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
                 +L+ L  L +  N +Q      F  L+ L++      NL  +    + 
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 73.5 bits (181), Expect = 4e-15
 Identities = 30/181 (16%), Positives = 51/181 (28%), Gaps = 16/181 (8%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQ----SLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN 139
             L++SS  ++    + L  L  +     SL+LS N ++  I    F    L  ++L  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTLRNN 210

Query: 140 KLSGQIPTNICSNLPFLEFLSLSLNMFHGG------IPSTLSNCTYLRTLSLAYN---DF 190
             S  +       L  LE   L L  F           S L     L            +
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 191 SGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS 250
              +      LT +    + +  ++      F      +   L            L+   
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSLK 328

Query: 251 S 251
            
Sbjct: 329 R 329

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 27/122 (22%), Positives = 44/122 (36%), Gaps = 2/122 (1%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
            +T L++S   L    P+   +LSSLQ LN+S N            + +L+ +    N +
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 530

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPST--LSNCTYLRTLSLAYNDFSGAVPREIG 199
                  +      L FL+L+ N F         L      R L +       A P +  
Sbjct: 531 MTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQ 590

Query: 200 NL 201
            +
Sbjct: 591 GM 592

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 66.6 bits (163), Expect = 8e-13
 Identities = 36/177 (20%), Positives = 53/177 (29%), Gaps = 22/177 (12%)

Query: 87  NISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNV---SLGKNKLSG 143
             +  NL     S L  L +L         L   +   I     L NV   SL    +  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 144 QIPTNICSNLPFLEFLSLSLNMF----------------HGGIPSTLSNCTYLRTLSLAY 187
               +       LE ++     F                 GG   +  +   L  L L+ 
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR 356

Query: 188 ND--FSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI 242
           N   F G   +     T LK L +  N +   +   F  L +LE      +NL+ M 
Sbjct: 357 NGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMS 412

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.6 bits (124), Expect = 8e-08
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 4/97 (4%)

Query: 152 NLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGA 211
            +P + +  + LN +   IP  L      + L L++N           +  +L+VL +  
Sbjct: 6   VVPNITYQCMELNFYK--IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSR 61

Query: 212 NRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248
             +Q      + +L+ L    L  N +Q + L     
Sbjct: 62  CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSG 98

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  102 bits (256), Expect = 6e-25
 Identities = 38/167 (22%), Positives = 64/167 (38%), Gaps = 3/167 (1%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
           +TVLN++   LR    +     S L SL++  N +S   P     +  LK ++L  N+LS
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS 86

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
             +     +    L  L L  N       +       L TL L++N  S         L 
Sbjct: 87  Q-LSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLE 145

Query: 203 KLKVLYIGANRLQGEIPREFG--NLTELEQFSLPTNNLQVMILNFLQ 247
            L+ L +  N++Q     E      + L++  L +N ++        
Sbjct: 146 NLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.7 bits (249), Expect = 4e-24
 Identities = 40/169 (23%), Positives = 65/169 (38%), Gaps = 4/169 (2%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
            V + S L L   +P  L   +++  LNL+ N+L     +       L ++ +G N +S 
Sbjct: 7   EVADCSHLKLT-QVPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK 63

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
            +   +C  LP L+ L+L  N        T + CT L  L L  N               
Sbjct: 64  -LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKN 122

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSS 252
           L  L +  N L          L  L++  L  N +Q +    L  +++S
Sbjct: 123 LITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANS 171

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 99.3 bits (248), Expect = 7e-24
 Identities = 39/177 (22%), Positives = 62/177 (35%), Gaps = 11/177 (6%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG--SIPSTIFTIYTLKNVSLGK 138
             +  + +S         +    + SLQ L L    L    S PS    +  L  + L  
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLN--------MFHGGIPSTLSNCTYLRTLSLAYNDF 190
           N ++  I  ++   L  LE L L  N           GG    L   ++L  L+L  N F
Sbjct: 490 NNIAN-INDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGF 548

Query: 191 SGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
                    +L +LK++ +G N L       F N   L+  +L  N +  +      
Sbjct: 549 DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.1 bits (245), Expect = 1e-23
 Identities = 32/176 (18%), Positives = 61/176 (34%), Gaps = 7/176 (3%)

Query: 79  HSHRVTVLNISSLNLRGTIPS--QLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSL 136
               +  L +S+  ++        +   SSL+ L LS N++    P     I  L  + L
Sbjct: 143 QLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFL 202

Query: 137 GKNKLSGQIPTNICS--NLPFLEFLSLSLNMFHGGIPSTLSNC--TYLRTLSLAYNDFSG 192
              +L   +   +C       +  LSLS +       +T      T L  L L+YN+ + 
Sbjct: 203 NNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262

Query: 193 AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248
                   L +L+  ++  N +Q         L  +   +L   +     ++    
Sbjct: 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNL-KRSFTKQSISLASL 317

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 97.0 bits (242), Expect = 4e-23
 Identities = 34/173 (19%), Positives = 62/173 (35%), Gaps = 4/173 (2%)

Query: 80  SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN 139
               T  +IS  +L          L  L+ LN+  N + G   +    +  LK +SL  +
Sbjct: 304 KRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNS 363

Query: 140 KLSGQ-IPTNICSNLPF--LEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP- 195
             S + +      +L    L  L+L+ N          S   +L  L L  N+    +  
Sbjct: 364 FTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTG 423

Query: 196 REIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248
           +E   L  +  +Y+  N+        F  +  L++  L    L+ +  +   F
Sbjct: 424 QEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF 476

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 93.5 bits (233), Expect = 5e-22
 Identities = 38/186 (20%), Positives = 71/186 (38%), Gaps = 15/186 (8%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQLG---NLSSLQSLNLSCNRLSGSIPSTIF--TIYTLKN 133
              R+  L ++++ L  ++  +L      +S+++L+LS ++LS +  +T        L  
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTM 252

Query: 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYN----- 188
           + L  N L+  +  +  + LP LE+  L  N        +L     +R L+L  +     
Sbjct: 253 LDLSYNNLNV-VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQS 311

Query: 189 ----DFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILN 244
                           L  L+ L +  N + G     F  L  L+  SL  +   +  L 
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 245 FLQFYS 250
              F S
Sbjct: 372 NETFVS 377

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.2 bits (227), Expect = 3e-21
 Identities = 29/142 (20%), Positives = 50/142 (35%), Gaps = 4/142 (2%)

Query: 106 SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNM 165
           S +  + S  +L+  +P  + T   +  ++L  N+L      N  +    L  L +  N 
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQLRRLPAANF-TRYSQLTSLDVGFNT 60

Query: 166 FHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNL 225
                P        L+ L+L +N+ S    +     T L  L++ +N +Q      F   
Sbjct: 61  ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120

Query: 226 TELEQFSLPTNNLQVMILNFLQ 247
             L    L  N L    L    
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQV 142

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.8 bits (226), Expect = 5e-21
 Identities = 33/166 (19%), Positives = 57/166 (34%), Gaps = 10/166 (6%)

Query: 84  TVLNISSLNLRG--TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
             L +  + L+   + PS    L +L  L+LS N ++      +  +  L+ + L  N L
Sbjct: 457 QRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNL 516

Query: 142 S-------GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAV 194
           +          P      L  L  L+L  N F         +   L+ + L  N+ +   
Sbjct: 517 ARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLP 576

Query: 195 PREIGNLTKLKVLYIGANRLQGEIPREFG-NLTELEQFSLPTNNLQ 239
                N   LK L +  N +     + FG     L +  +  N   
Sbjct: 577 ASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.4 bits (225), Expect = 7e-21
 Identities = 33/160 (20%), Positives = 58/160 (36%), Gaps = 3/160 (1%)

Query: 87  NISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIP 146
             S   L       L + S L  LNL+ N++S         +  L+ + LG N++  ++ 
Sbjct: 364 FTSLRTLTNETFVSLAH-SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422

Query: 147 TNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG--AVPREIGNLTKL 204
                 L  +  + LS N +     ++ +    L+ L L         + P     L  L
Sbjct: 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNL 482

Query: 205 KVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILN 244
            +L +  N +          L +LE   L  NNL  +  +
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKH 522

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.7 bits (223), Expect = 1e-20
 Identities = 42/176 (23%), Positives = 65/176 (36%), Gaps = 8/176 (4%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTI--FTIYTLKNVSL 136
               +  L++S   L  T       L +LQ L LS N++       +  F   +LK + L
Sbjct: 119 KQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178

Query: 137 GKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLS---NCTYLRTLSLAYNDFSGA 193
             N++           +  L  L L+       +   L      T +R LSL+ +  S  
Sbjct: 179 SSNQIKE-FSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTT 237

Query: 194 VPREIGNL--TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
                  L  T L +L +  N L       F  L +LE F L  NN+Q +  + L 
Sbjct: 238 SNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH 293

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 89.3 bits (222), Expect = 2e-20
 Identities = 31/171 (18%), Positives = 61/171 (35%), Gaps = 12/171 (7%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           T+L++S  NL          L  L+   L  N +      ++  ++ ++ ++L ++    
Sbjct: 251 TMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 144 --------QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP 195
                   +I       L  LE L++  N   G   +  +    L+ LSL+ +  S    
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370

Query: 196 REIG----NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI 242
                     + L +L +  N++       F  L  LE   L  N +   +
Sbjct: 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQEL 421

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 83.5 bits (207), Expect = 2e-18
 Identities = 38/185 (20%), Positives = 72/185 (38%), Gaps = 15/185 (8%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNL---------SCNRLSGSIPSTIFTIYTL 131
            ++    +   N++      L  L +++ LNL         S   L      +   +  L
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCL 331

Query: 132 KNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGG--IPSTLSNC--TYLRTLSLAY 187
           +++++  N + G I +N+ + L  L++LSLS +          T  +   + L  L+L  
Sbjct: 332 EHLNMEDNDIPG-IKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 188 NDFSGAVPREIGNLTKLKVLYIGANRLQGEIP-REFGNLTELEQFSLPTNNLQVMILNFL 246
           N  S         L  L+VL +G N +  E+  +E+  L  + +  L  N    +  N  
Sbjct: 391 NKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450

Query: 247 QFYSS 251
               S
Sbjct: 451 ALVPS 455

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 66.2 bits (162), Expect = 1e-12
 Identities = 20/113 (17%), Positives = 38/113 (33%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
            + +LN+ S            +L  L+ ++L  N L+    S      +LK+++L KN +
Sbjct: 537 HLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI 596

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAV 194
           +             L  L +  N F     S      ++        + S   
Sbjct: 597 TSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.1 bits (115), Expect = 1e-06
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLG 137
               + ++++   NL     S   N  SL+SLNL  N ++          +  L  + + 
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 138 KNKLSGQIPTNICSNL-PFLEFLSLSLN 164
            N          C ++  F+ +++ +  
Sbjct: 618 FNPFDC-----TCESIAWFVNWINETHT 640

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 90.8 bits (226), Expect = 4e-21
 Identities = 31/151 (20%), Positives = 48/151 (31%), Gaps = 1/151 (0%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
              L  S   L     +    L +L  L+L+  ++      T  + + L  + L  N L 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
             +     S    L+ L              L N   L +L L  N  S     +     
Sbjct: 95  F-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE 153

Query: 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSL 233
           KLKVL    N +      +  +L +    SL
Sbjct: 154 KLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 88.9 bits (221), Expect = 2e-20
 Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 6/163 (3%)

Query: 78  VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSL 136
           +        N  +L L   IP  L   +S + L  S N L  +I +T F+    L  + L
Sbjct: 9   IEKEVNKTYNCENLGLN-EIPGTL--PNSTECLEFSFNVLP-TIQNTTFSRLINLTFLDL 64

Query: 137 GKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPR 196
            + ++   I  +   +   L+ L L+ N       + LS    L+ L       S     
Sbjct: 65  TRCQIYW-IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFI 123

Query: 197 EIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
            + N   L+ LY+G+N +      +     +L+      N + 
Sbjct: 124 PLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 88.5 bits (220), Expect = 3e-20
 Identities = 36/172 (20%), Positives = 67/172 (38%), Gaps = 6/172 (3%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKLS 142
             LN+S                 L+ L+L+  RL      + F  ++ LK ++L  + L 
Sbjct: 379 QSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGI---PSTLSNCTYLRTLSLAYNDFSGAVPREIG 199
                 +   LP L+ L+L  N F  G     ++L     L  L L++ D S        
Sbjct: 439 I-SSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFT 497

Query: 200 NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251
           +L  +  + +  NRL         +L  +   +L +N++ +++ + L   S 
Sbjct: 498 SLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQ 548

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 87.8 bits (218), Expect = 5e-20
 Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 5/169 (2%)

Query: 84  TVLNISS--LNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
             L++S   +        QL NLS LQSLNLS N               L+ + L   +L
Sbjct: 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL 412

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG-- 199
             +   +   NL  L+ L+LS ++              L+ L+L  N F     ++    
Sbjct: 413 KVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSL 472

Query: 200 -NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
             L +L++L +    L       F +L  +    L  N L    +  L 
Sbjct: 473 QTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALS 521

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 84.7 bits (210), Expect = 6e-19
 Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 4/169 (2%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
            +  L++++ +L   +PS L  LS+L+ L LS N+       +     +L ++S+  N  
Sbjct: 279 GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK 337

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFH--GGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG 199
             ++ T    NL  L  L LS +           L N ++L++L+L+YN+          
Sbjct: 338 RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397

Query: 200 NLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQVMILNFLQ 247
              +L++L +   RL+ +  +  F NL  L+  +L  + L +       
Sbjct: 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 26/166 (15%), Positives = 51/166 (30%), Gaps = 2/166 (1%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           T L+++   +         +   L +L L+ N L     + +     LK++   +  +S 
Sbjct: 60  TFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
            I      N   LE L L  N               L+ L    N        ++ +L +
Sbjct: 120 -IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 204 LKVLYIGANRLQ-GEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248
              L +  N      I     +    +  +       ++I   L+ 
Sbjct: 179 ATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKN 224

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 82.8 bits (205), Expect = 3e-18
 Identities = 34/166 (20%), Positives = 58/166 (34%), Gaps = 3/166 (1%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKN 139
             +  L +S+            N  SL  L++  N     + +     +  L+ + L  +
Sbjct: 301 STLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHD 360

Query: 140 KLSGQIPTNIC-SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
            +      N+   NL  L+ L+LS N            C  L  L LA+        +  
Sbjct: 361 DIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 199 -GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMIL 243
             NL  LKVL +  + L     + F  L  L+  +L  N+     +
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 81.2 bits (201), Expect = 9e-18
 Identities = 33/159 (20%), Positives = 63/159 (39%), Gaps = 4/159 (2%)

Query: 84  TVLNISSLNLRGTIP-SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
            +L+++   L+     S   NL  L+ LNLS + L  S       +  L++++L  N   
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462

Query: 143 G--QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGN 200
                 TN    L  LE L LS            ++   +  + L++N  + +    + +
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522

Query: 201 LTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           L  +  L + +N +   +P     L++    +L  N L 
Sbjct: 523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLD 560

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.3 bits (196), Expect = 4e-17
 Identities = 36/177 (20%), Positives = 60/177 (33%), Gaps = 7/177 (3%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQLGN--LSSLQSLNLSCNRLSGSIPSTI--FTIYTLKNV 134
            S     LN         I   L N  + SL              P+        +++++
Sbjct: 200 DSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESI 259

Query: 135 SLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAV 194
           +L K+     I +N       L+ L L+       +PS L   + L+ L L+ N F    
Sbjct: 260 NLQKHYFFN-ISSNTFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLC 317

Query: 195 PREIGNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQVMILNFLQFYS 250
                N   L  L I  N  + E+      NL  L +  L  ++++      LQ  +
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRN 374

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 79.3 bits (196), Expect = 5e-17
 Identities = 34/176 (19%), Positives = 66/176 (37%), Gaps = 7/176 (3%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLS--SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK 138
             + +     ++     P+    L   S++S+NL  +       +T      L+ + L  
Sbjct: 228 QSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTA 287

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE- 197
             LS ++P+ +   L  L+ L LS N F      + SN   L  LS+  N     +    
Sbjct: 288 THLS-ELPSGL-VGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345

Query: 198 IGNLTKLKVLYIGANRLQ--GEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251
           + NL  L+ L +  + ++       +  NL+ L+  +L  N    +     +    
Sbjct: 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQ 401

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 75.4 bits (186), Expect = 9e-16
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 5/139 (3%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNV---SLG 137
           H + VLN+S   L  +       L +LQ LNL  N           ++ TL  +    L 
Sbjct: 425 HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLS 484

Query: 138 KNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE 197
              LS  I  +  ++L  +  + LS N         LS+   +  L+LA N  S  +P  
Sbjct: 485 FCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSL 542

Query: 198 IGNLTKLKVLYIGANRLQG 216
           +  L++ + + +  N L  
Sbjct: 543 LPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 68.5 bits (168), Expect = 2e-13
 Identities = 24/198 (12%), Positives = 56/198 (28%), Gaps = 31/198 (15%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG------------------- 119
           +   +  L + S ++      +      L+ L+   N +                     
Sbjct: 127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186

Query: 120 ------SIPSTIFTIYTLKNVSLGKNKLSGQIPTNIC----SNLPFLEFLSLSLNMFHGG 169
                  I    F     ++++ G  +    I   +      +L    F  +        
Sbjct: 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

Query: 170 IPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELE 229
           +   L     + +++L  + F           + L+ L + A  L  E+P     L+ L+
Sbjct: 247 VFEGLCE-MSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLK 304

Query: 230 QFSLPTNNLQVMILNFLQ 247
           +  L  N  + +      
Sbjct: 305 KLVLSANKFENLCQISAS 322

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 20/120 (16%), Positives = 33/120 (27%), Gaps = 4/120 (3%)

Query: 132 KNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS 191
           K  +     L+ +IP  +       E L  S N+      +T S    L  L L      
Sbjct: 15  KTYNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70

Query: 192 GAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251
                   +  +L  L + AN L             L+        +  +    L    +
Sbjct: 71  WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.5 bits (116), Expect = 8e-07
 Identities = 25/111 (22%), Positives = 48/111 (43%), Gaps = 6/111 (5%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK 140
             +  +++S   L  +    L +L  +  LNL+ N +S  +PS +  +   + ++L +N 
Sbjct: 500 KMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNP 558

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS 191
           L        CSN+ FLE+   ++        +   N   LR + L+    S
Sbjct: 559 LDC-----TCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 88.8 bits (221), Expect = 6e-21
 Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 15/164 (9%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             L + S+ L    P Q   LS LQ + +    L   +P T+     L+ ++L +N L  
Sbjct: 84  VALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR- 140

Query: 144 QIPTNICSNLPFLEFLSLSLN---------MFHGGIPSTLSNCTYLRTLSLAYNDFSGAV 194
            +P +I  +L  L  LS+            +              L++L L +     ++
Sbjct: 141 ALPASIA-SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SL 198

Query: 195 PREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           P  I NL  LK L I  + L   +     +L +LE+  L     
Sbjct: 199 PASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTA 241

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 87.3 bits (217), Expect = 2e-20
 Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 13/172 (7%)

Query: 84  TVLNISSLNLRGTIPSQLGN---------LSSLQSLNLSCNRLSGSIPSTIFTIYTLKNV 134
             L+I +      +P  L +         L +LQSL L    +  S+P++I  +  LK++
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSL 211

Query: 135 SLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAV 194
            +  + LS  +   I  +LP LE L L         P        L+ L L        +
Sbjct: 212 KIRNSPLS-ALGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL 269

Query: 195 PREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFL 246
           P +I  LT+L+ L +        +P     L       +P  +LQ  +    
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVP-PHLQAQLDQHR 320

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 73.1 bits (180), Expect = 2e-15
 Identities = 19/160 (11%), Positives = 43/160 (26%), Gaps = 9/160 (5%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK 138
           HS     L              L       + + +    +    +        +  +   
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQAN----SNNPQIETRTG 65

Query: 139 NKLSGQIPTNI-CSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE 197
             L       +  +  P    L L         P      ++L+ +++        +P  
Sbjct: 66  RALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 198 IGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237
           +     L+ L +  N L+  +P    +L  L + S+    
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP 161

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 5e-14
 Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 8/150 (5%)

Query: 98  PSQLGNLSSLQSLNLSCNRLSGSIPSTI--FTIYTLKNVSLGKNKLSGQIPTNICSNLPF 155
             +  N ++ Q    +   L  +    +   T      + L    L  Q P      L  
Sbjct: 49  AWRQANSNNPQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAF-RLSH 105

Query: 156 LEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQ 215
           L+ +++        +P T+     L TL+LA N    A+P  I +L +L+ L I A    
Sbjct: 106 LQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL 163

Query: 216 GEIPREFGNLTELEQFSLPTNNLQVMILNF 245
            E+P    +     +      NLQ + L +
Sbjct: 164 TELPEPLASTDASGEHQGLV-NLQSLRLEW 192

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 65.0 bits (159), Expect = 2e-12
 Identities = 22/142 (15%), Positives = 40/142 (28%), Gaps = 12/142 (8%)

Query: 101 LGNLSSLQSLNLS-CNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159
             + S  ++L       L       +       N    +   + +       N    +  
Sbjct: 8   HHHSSGRENLYFQGSTALR-PYHDVLSQWQRHYNADRNRWHSAWRQA-----NSNNPQIE 61

Query: 160 SLSLNMFHGGIPSTLSNCTY--LRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGE 217
           + +           L + T      L L         P +   L+ L+ + I A  L  E
Sbjct: 62  TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-E 118

Query: 218 IPREFGNLTELEQFSLPTNNLQ 239
           +P        LE  +L  N L+
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR 140

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 90.5 bits (225), Expect = 7e-21
 Identities = 31/170 (18%), Positives = 52/170 (30%), Gaps = 4/170 (2%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKLS 142
             L++S       + +    L  LQ L+   + L      + F  +  L  + +      
Sbjct: 379 RHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK 437

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPS-TLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
                 I   L  L  L ++ N F     S   +N T L  L L+              L
Sbjct: 438 I-DFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251
            +L++L +  N L       +  L  L       N ++        F  S
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKS 546

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 88.6 bits (220), Expect = 3e-20
 Identities = 28/161 (17%), Positives = 52/161 (32%), Gaps = 1/161 (0%)

Query: 79  HSHRVTVLNISSLNLRGTIP-SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLG 137
               +  L+     L+     S   +L  L  L++S              + +L  + + 
Sbjct: 397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMA 456

Query: 138 KNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE 197
            N       +N+ +N   L FL LS                 L+ L++++N+        
Sbjct: 457 GNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSH 516

Query: 198 IGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
              L  L  L    NR++            L  F+L  N++
Sbjct: 517 YNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 82.4 bits (204), Expect = 4e-18
 Identities = 35/172 (20%), Positives = 59/172 (34%), Gaps = 6/172 (3%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
              +++S   L+        N S LQ L+LS   +          ++ L N+ L  N + 
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ 93

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA-VPREIGNL 201
                   S L  LE L              +     L+ L++A+N      +P    NL
Sbjct: 94  S-FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNL 152

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSSA 253
           T L  + +  N +Q     +   L E       + ++    LN + F    A
Sbjct: 153 TNLVHVDLSYNYIQTITVNDLQFLREN-PQVNLSLDMS---LNPIDFIQDQA 200

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 78.2 bits (193), Expect = 9e-17
 Identities = 36/190 (18%), Positives = 63/190 (33%), Gaps = 28/190 (14%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG------------------------ 119
             L ++    +G+I  +   L SL  L+LS N LS                         
Sbjct: 331 KSLTLT--MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 120 -SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
             + +    +  L+++    + L      +   +L  L +L +S               T
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 179 YLRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237
            L TL +A N F       +  N T L  L +   +L+      F  L  L+  ++  NN
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNN 508

Query: 238 LQVMILNFLQ 247
           L  +  +   
Sbjct: 509 LLFLDSSHYN 518

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.8 bits (192), Expect = 2e-16
 Identities = 31/150 (20%), Positives = 55/150 (36%), Gaps = 5/150 (3%)

Query: 95  GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLP 154
           G++   +  + ++ +      +LS  +P  I +  + KN+ L  N L   + +   SN  
Sbjct: 2   GSLNPCIEVVPNI-TYQCMDQKLS-KVPDDIPS--STKNIDLSFNPLKI-LKSYSFSNFS 56

Query: 155 FLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRL 214
            L++L LS                +L  L L  N      P     LT L+ L     +L
Sbjct: 57  ELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKL 116

Query: 215 QGEIPREFGNLTELEQFSLPTNNLQVMILN 244
                   G L  L++ ++  N +    L 
Sbjct: 117 ASLESFPIGQLITLKKLNVAHNFIHSCKLP 146

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.4 bits (191), Expect = 2e-16
 Identities = 32/164 (19%), Positives = 58/164 (35%), Gaps = 6/164 (3%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK 140
           H ++ L ++   ++   P     L+SL++L     +L+      I  + TLK +++  N 
Sbjct: 80  HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF 139

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR----TLSLAYNDFSGAVPR 196
           +         SNL  L  + LS N       + L           +L ++ N     +  
Sbjct: 140 IHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF-IQD 198

Query: 197 EIGNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
           +     KL  L +  N     I +    NL  L    L     +
Sbjct: 199 QAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFK 242

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 67.0 bits (164), Expect = 6e-13
 Identities = 31/163 (19%), Positives = 64/163 (39%), Gaps = 11/163 (6%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
            +    ++  N       +   L+++ +++L+   +   +       +  +++S+ + +L
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLEDVPKH-FKWQSLSIIRCQL 319

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS--GAVPREIG 199
             Q PT    +LPFL+ L+L++N   G I         L  L L+ N  S  G       
Sbjct: 320 K-QFPTL---DLPFLKSLTLTMN--KGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 200 NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI 242
               L+ L +  N     +   F  L EL+      + L+ + 
Sbjct: 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVT 415

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 65.4 bits (160), Expect = 2e-12
 Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 15/168 (8%)

Query: 84  TVLNISSLNLRGTIPSQLGNLS----SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN 139
             +++S   ++    + L  L        SL++S N +   I    F    L  ++L  N
Sbjct: 156 VHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHELTLRGN 214

Query: 140 KLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR--------TLSLAYNDFS 191
             S  I      NL  L    L L  F       +   + +            L Y +  
Sbjct: 215 FNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDF 274

Query: 192 GAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
                +   L  +  + +    +  +   +     + +  S+    L+
Sbjct: 275 SDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLK 320

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 20/109 (18%), Positives = 40/109 (36%), Gaps = 2/109 (1%)

Query: 84  TVLNISSLNLRGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
             L ++  + +    S    N ++L  L+LS  +L         T++ L+ +++  N L 
Sbjct: 451 NTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLL 510

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS 191
             + ++  + L  L  L  S N               L   +L  N  +
Sbjct: 511 F-LDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.3 bits (144), Expect = 2e-10
 Identities = 26/114 (22%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA 193
                 KLS ++P +I S+    + + LS N        + SN + L+ L L+  +    
Sbjct: 16  YQCMDQKLS-KVPDDIPSST---KNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI 71

Query: 194 VPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
             +    L  L  L +  N +Q   P  F  LT LE        L  +    + 
Sbjct: 72  EDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIG 125

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK 140
           HR+ +LN+S  NL     S    L SL +L+ S NR+  S         +L   +L  N 
Sbjct: 497 HRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS 556

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMF 166
           +       IC +  FL+++       
Sbjct: 557 V-----ACICEHQKFLQWVKEQKQFL 577

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 12/82 (14%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 170 IPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELE 229
           +P  +   +  + + L++N           N ++L+ L +    ++    + +  L  L 
Sbjct: 26  VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLS 83

Query: 230 QFSLPTNNLQVMILNFLQFYSS 251
              L  N +Q          +S
Sbjct: 84  NLILTGNPIQSFSPGSFSGLTS 105

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 87.1 bits (216), Expect = 8e-20
 Identities = 33/170 (19%), Positives = 69/170 (40%), Gaps = 4/170 (2%)

Query: 81  HRVTVLNIS--SLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK 138
             +  L++S   L+ +G         +SL+ L+LS N +  ++ S    +  L+++    
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQH 405

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
           + L      ++  +L  L +L +S            +  + L  L +A N F      +I
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465

Query: 199 -GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
              L  L  L +   +L+   P  F +L+ L+  ++ +N L+ +      
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFD 515

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 80.1 bits (198), Expect = 2e-17
 Identities = 42/158 (26%), Positives = 65/158 (41%), Gaps = 7/158 (4%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLS 142
                  LN    IP  L    S ++L+LS N L   + S  F  +  L+ + L + ++ 
Sbjct: 10  ITYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
             I      +L  L  L L+ N          S  + L+ L     + +      IG+L 
Sbjct: 66  -TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124

Query: 203 KLKVLYIGANRLQ-GEIPREFGNLTELEQFSLPTNNLQ 239
            LK L +  N +Q  ++P  F NLT LE   L +N +Q
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 75.1 bits (185), Expect = 9e-16
 Identities = 31/152 (20%), Positives = 58/152 (38%), Gaps = 2/152 (1%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
              L++S   LR        +   LQ L+LS   +         ++  L  + L  N + 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDF-SGAVPREIGNL 201
             +     S L  L+ L              + +   L+ L++A+N   S  +P    NL
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSL 233
           T L+ L + +N++Q     +   L ++   +L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 66.7 bits (163), Expect = 7e-13
 Identities = 33/161 (20%), Positives = 55/161 (34%), Gaps = 6/161 (3%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           + L ++   ++         LSSLQ L      L+      I  + TLK +++  N +  
Sbjct: 79  STLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS 138

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR----TLSLAYNDFSGAVPREIG 199
                  SNL  LE L LS N       + L     +     +L L+ N  +  +     
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAF 197

Query: 200 NLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
              +L  L +  N     + +     L  LE   L     +
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR 238

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 65.1 bits (159), Expect = 3e-12
 Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 3/139 (2%)

Query: 84  TVLNISSLNLRGTIP-SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
             L+    NL+     S   +L +L  L++S      +       + +L+ + +  N   
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI-GNL 201
                +I + L  L FL LS        P+  ++ + L+ L++A N    +VP  I   L
Sbjct: 459 ENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK-SVPDGIFDRL 517

Query: 202 TKLKVLYIGANRLQGEIPR 220
           T L+ +++  N      PR
Sbjct: 518 TSLQKIWLHTNPWDCSCPR 536

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 55.9 bits (135), Expect = 3e-09
 Identities = 20/116 (17%), Positives = 39/116 (33%), Gaps = 4/116 (3%)

Query: 132 KNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS 191
                 +     +IP N+  +    + L LS N        +  +   L+ L L+  +  
Sbjct: 10  ITYQCMELNFY-KIPDNLPFST---KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 192 GAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
                   +L+ L  L +  N +Q      F  L+ L++      NL  +    + 
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIG 121

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 52.0 bits (125), Expect = 5e-08
 Identities = 30/166 (18%), Positives = 50/166 (30%), Gaps = 25/166 (15%)

Query: 100 QLGNLSSLQSLNLSCNRLSG------SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNL 153
               L  L +L +   RL+        I      +  + + SL    +      +     
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 154 PFLEFLSLSLNMFHGGIPSTL----------------SNCTYLRTLSLAYND--FSGAVP 195
             LE ++     F      +L                 +   L  L L+ N   F G   
Sbjct: 307 QHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCS 366

Query: 196 REIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241
           +     T LK L +  N +   +   F  L +LE      +NL+ M
Sbjct: 367 QSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQM 411

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 80.6 bits (199), Expect = 2e-17
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 9/164 (5%)

Query: 80  SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGK 138
           S    +      NL   +P     L++ + L LS N +  ++ ++ F     L+ + LG 
Sbjct: 3   SFDGRIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIR-TVTASSFPFLEQLQLLELGS 57

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAV--PR 196
                 I      NLP L  L L  +  +   P       +L  L L +   S AV    
Sbjct: 58  QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117

Query: 197 EIGNLTKLKVLYIGANRLQG-EIPREFGNLTELEQFSLPTNNLQ 239
              NL  L  L +  N+++   +   FG L  L+     +N + 
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 46/167 (27%), Positives = 70/167 (41%), Gaps = 10/167 (5%)

Query: 87  NISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIP 146
            + +L+LR    + +  + S+  + LS N+L  ++P       T   + L +N+L     
Sbjct: 363 KLQTLDLRDNALTTIHFIPSIPDIFLSGNKLV-TLPKINL---TANLIHLSENRLENLDI 418

Query: 147 TNICSNLPFLEFLSLSLNMFHGGIPS-TLSNCTYLRTLSLAYNDFSGAVPREI-----GN 200
                 +P L+ L L+ N F       T S    L  L L  N    A   E+       
Sbjct: 419 LYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG 478

Query: 201 LTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
           L+ L+VLY+  N L    P  F +LT L   SL +N L V+  N L 
Sbjct: 479 LSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP 525

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 5/158 (3%)

Query: 85  VLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTI---YTLKNVSLGKNKL 141
           +    S  +  +    L     +       + +        F      +++++ L    +
Sbjct: 220 ITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHLDLSHGFV 278

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
              + + +   L  L+ L+L+ N  +            L+ L+L+YN            L
Sbjct: 279 F-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
            K+  + +  N +     + F  L +L+   L  N L 
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 64.1 bits (156), Expect = 6e-12
 Identities = 35/162 (21%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 80  SHRVTVLNISSLNLRGTIPSQLGNL--SSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSL 136
           +H +        N++    +    L  SS++ L+LS   +  S+ S +F     LK ++L
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVF-SLNSRVFETLKDLKVLNL 297

Query: 137 GKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPR 196
             NK++ +I       L  L+ L+LS N+      S       +  + L  N  +    +
Sbjct: 298 AYNKIN-KIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQ 356

Query: 197 EIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
               L KL+ L +  N L          +  +    L  N L
Sbjct: 357 TFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSGNKL 393

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.7 bits (150), Expect = 4e-11
 Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 102 GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLP--FLEFL 159
           GN  ++       N +S S   ++   + +     G + +      N  + L    +  L
Sbjct: 213 GNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIK-DPDQNTFAGLARSSVRHL 271

Query: 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP 219
            LS                 L+ L+LAYN  +         L  L+VL +  N L     
Sbjct: 272 DLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYS 331

Query: 220 REFGNLTELEQFSLPTNNLQVMILNFLQFYSS 251
             F  L ++    L  N++ ++     +F   
Sbjct: 332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEK 363

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.4 bits (149), Expect = 6e-11
 Identities = 38/168 (22%), Positives = 63/168 (37%), Gaps = 9/168 (5%)

Query: 87  NISSLNLRGTIPSQLGNLS-SLQSLNLSCNRLSG-SIPSTIFTIYTLKNVSLGKNKLSGQ 144
           +I  + L G     L  ++ +   ++LS NRL    I   +  +  L+ + L +N+ S  
Sbjct: 382 SIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSC 441

Query: 145 IPTNICSNLPFLEFLSLSLNMFHGGI-----PSTLSNCTYLRTLSLAYNDFSGAVPREIG 199
                 S  P LE L L  NM                 ++L+ L L +N  +   P    
Sbjct: 442 SGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFS 501

Query: 200 NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
           +LT L+ L + +NRL   +         LE   +  N L     +   
Sbjct: 502 HLTALRGLSLNSNRLT-VLSHND-LPANLEILDISRNQLLAPNPDVFV 547

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 61.0 bits (148), Expect = 6e-11
 Identities = 35/172 (20%), Positives = 52/172 (30%), Gaps = 10/172 (5%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLS-GSIPSTIFT-IYTLKNVSLGKNKL 141
            +L++ S  +    P     L  L  L L    LS   +    F  +  L  + L KN++
Sbjct: 76  RILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQI 135

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT--YLRTLSLAYNDFSGAVPREIG 199
                      L  L+ +  S N         L       L   SLA N     V  + G
Sbjct: 136 RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWG 195

Query: 200 NLTK------LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNF 245
                     L++L +  N    +I   F N     Q         +M   F
Sbjct: 196 KCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 57.9 bits (140), Expect = 6e-10
 Identities = 41/152 (26%), Positives = 64/152 (42%), Gaps = 8/152 (5%)

Query: 84  TVLNISSLNLRG-TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKL 141
            ++++S   L    I   L  +  LQ L L+ NR S        +    L+ + LG+N L
Sbjct: 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENML 463

Query: 142 SGQIPTNIC----SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE 197
                T +C      L  L+ L L+ N  +   P   S+ T LR LSL  N  +  +   
Sbjct: 464 QLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHN 522

Query: 198 IGNLTKLKVLYIGANRLQGEIPREFGNLTELE 229
                 L++L I  N+L    P  F +L+ L+
Sbjct: 523 D-LPANLEILDISRNQLLAPNPDVFVSLSVLD 553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 52.1 bits (125), Expect = 6e-08
 Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 6/121 (4%)

Query: 129 YTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYN 188
           +  +        L+ Q+P      L   E L LS N       S+      L+ L L   
Sbjct: 4   FDGRIAFYRFCNLT-QVP----QVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQ 58

Query: 189 DFSGAVPREI-GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
                + +E   NL  L++L +G++++    P  F  L  L +  L    L   +L    
Sbjct: 59  YTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGY 118

Query: 248 F 248
           F
Sbjct: 119 F 119

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 8e-05
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 13/114 (11%)

Query: 84  TVLNISSLNLRGTIPSQL-----GNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLG 137
             L +    L+    ++L       LS LQ L L+ N L+ S+P  +F+  T L+ +SL 
Sbjct: 454 EQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPPGVFSHLTALRGLSLN 512

Query: 138 KNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS 191
            N+L+  +          LE L +S N      P    +   L  L + +N F 
Sbjct: 513 SNRLT-VLSH--NDLPANLEILDISRNQLLAPNPDVFVS---LSVLDITHNKFI 560

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 77.7 bits (192), Expect = 5e-17
 Identities = 29/161 (18%), Positives = 55/161 (34%), Gaps = 4/161 (2%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKN 139
             +  L++S   +  T+ S    L  L+ L+   + L      ++F  +  L  + +   
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 140 KLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPS-TLSNCTYLRTLSLAYNDFSGAVPREI 198
                    I + L  LE L ++ N F         +    L  L L+        P   
Sbjct: 137 HTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195

Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
            +L+ L+VL +  N         +  L  L+      N++ 
Sbjct: 196 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM 236

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 39/163 (23%), Positives = 63/163 (38%), Gaps = 8/163 (4%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLS 142
           T +  +S  L  ++P+ +   SS   L L  N+L  S+P  +F   T L  +SL  N LS
Sbjct: 10  TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLS 65

Query: 143 GQ-IPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI-GN 200
            +   +        L++L LS N     + S       L  L   +++        +  +
Sbjct: 66  FKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 124

Query: 201 LTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMIL 243
           L  L  L I     +      F  L+ LE   +  N+ Q   L
Sbjct: 125 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFL 167

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.0 bits (164), Expect = 3e-13
 Identities = 34/184 (18%), Positives = 64/184 (34%), Gaps = 28/184 (15%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLS------------------------ 118
            T L + S  L+         L+ L  L+LS N LS                        
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 119 -GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNC 177
             ++ S    +  L+++    + L      ++  +L  L +L +S            +  
Sbjct: 90  VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 149

Query: 178 TYLRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPT 235
           + L  L +A N F      +I   L  L  L +   +L+ ++    F +L+ L+  ++  
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSH 208

Query: 236 NNLQ 239
           NN  
Sbjct: 209 NNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 63.1 bits (154), Expect = 8e-12
 Identities = 32/165 (19%), Positives = 66/165 (40%), Gaps = 6/165 (3%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQ--LGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVS 135
              ++  L+    NL+  +       +L +L  L++S         + IF  + +L+ + 
Sbjct: 99  GLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLK 156

Query: 136 LGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP 195
           +  N        +I + L  L FL LS        P+  ++ + L+ L++++N+F     
Sbjct: 157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDT 216

Query: 196 REIGNLTKLKVLYIGANRLQGEIPREFGNL-TELEQFSLPTNNLQ 239
                L  L+VL    N +     +E  +  + L   +L  N+  
Sbjct: 217 FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 76.3 bits (188), Expect = 3e-16
 Identities = 34/160 (21%), Positives = 63/160 (39%), Gaps = 5/160 (3%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNK 140
              +L++    ++     +  +   L+ L L+ N +S ++    F  ++ L+ + L  N+
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS-AVEPGAFNNLFNLRTLGLRSNR 91

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGN 200
           L   IP  + + L  L  L +S N     +     +   L++L +  ND      R    
Sbjct: 92  LK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSG 150

Query: 201 LTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
           L  L+ L +    L   IP E   +L  L    L   N+ 
Sbjct: 151 LNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNIN 189

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 74.0 bits (182), Expect = 2e-15
 Identities = 36/156 (23%), Positives = 59/156 (37%), Gaps = 1/156 (0%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
            VL +  LN+          L  L+ L +S      ++         L ++S+    L+ 
Sbjct: 179 IVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT- 237

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
            +P     +L +L FL+LS N       S L     L+ + L     +   P     L  
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           L+VL +  N+L       F ++  LE   L +N L 
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 70.1 bits (172), Expect = 5e-14
 Identities = 36/159 (22%), Positives = 63/159 (39%), Gaps = 7/159 (4%)

Query: 84  TVLNISSLNLRGTIPSQL-GNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKL 141
           T L+IS  N    +   +  +L +L+SL +  N L   I    F+ + +L+ ++L K  L
Sbjct: 107 TKLDISE-NKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNL 164

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
           +  IPT   S+L  L  L L     +     +      L+ L +++  +   +       
Sbjct: 165 T-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYG 223

Query: 202 TKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
             L  L I    L   +P     +L  L   +L  N + 
Sbjct: 224 LNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPIS 261

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 8e-13
 Identities = 32/160 (20%), Positives = 59/160 (36%), Gaps = 3/160 (1%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKLS 142
             L ++   +    P    NL +L++L L  NRL   IP  +FT +  L  + + +NK+ 
Sbjct: 59  EELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIV 117

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
             +   +  +L  L+ L +  N          S    L  L+L   + +      + +L 
Sbjct: 118 -ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLH 176

Query: 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI 242
            L VL +    +       F  L  L+   +        +
Sbjct: 177 GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTM 216

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 65.1 bits (159), Expect = 2e-12
 Identities = 36/162 (22%), Positives = 61/162 (37%), Gaps = 8/162 (4%)

Query: 80  SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGK 138
           S +   +          +P  +   +  + L+L  NR+  ++    F  +  L+ + L +
Sbjct: 10  SAQDRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIK-TLNQDEFASFPHLEELELNE 65

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
           N +S  +     +NL  L  L L  N          +  + L  L ++ N     +    
Sbjct: 66  NIVS-AVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 199 GNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
            +L  LK L +G N L   I    F  L  LEQ +L   NL 
Sbjct: 125 QDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLT 165

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.0 bits (156), Expect = 5e-12
 Identities = 29/136 (21%), Positives = 56/136 (41%), Gaps = 3/136 (2%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKN 139
           +R+ VL IS      T+        +L SL+++   L+ ++P         L+ ++L  N
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYN 258

Query: 140 KLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG 199
            +S  I  ++   L  L+ + L         P       YLR L+++ N  +        
Sbjct: 259 PIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFH 317

Query: 200 NLTKLKVLYIGANRLQ 215
           ++  L+ L + +N L 
Sbjct: 318 SVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 3/114 (2%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLG 137
           +   +T L+I+  NL       + +L  L+ LNLS N +S +I  ++      L+ + L 
Sbjct: 222 YGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPIS-TIEGSMLHELLRLQEIQLV 280

Query: 138 KNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS 191
             +L+  +       L +L  L++S N       S   +   L TL L  N  +
Sbjct: 281 GGQLA-VVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.8 bits (114), Expect = 1e-06
 Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA 193
           V   + +    +P  I +       L L  N          ++  +L  L L  N  S  
Sbjct: 16  VLCHRKRFV-AVPEGIPTET---RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 194 VPREIGNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQV 240
            P    NL  L+ L + +NRL+  IP   F  L+ L +  +  N + +
Sbjct: 72  EPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVI 118

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 74.5 bits (184), Expect = 1e-15
 Identities = 37/156 (23%), Positives = 70/156 (44%), Gaps = 13/156 (8%)

Query: 87  NISSLNLRG---TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
            +++L +     T  S L NL++L+ L L+ + +S   P    T   + +++LG N    
Sbjct: 89  KLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLT--KMYSLNLGANHNLS 146

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
              + + SN+  L +L+++ +       + ++N T L +LSL YN      P  + +LT 
Sbjct: 147 -DLSPL-SNMTGLNYLTVTESKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTS 200

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           L       N++    P    N+T L    +  N + 
Sbjct: 201 LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 73.7 bits (182), Expect = 2e-15
 Identities = 38/164 (23%), Positives = 73/164 (44%), Gaps = 13/164 (7%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             L ++   ++   P  + NL+ L SL+L+ N++    P  + ++ +L   +   N+++ 
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
             P    +N+  L  L +  N      P  L+N + L  L +  N  S      + +LTK
Sbjct: 214 ITPV---ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTK 266

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
           LK+L +G+N++         NL++L    L  N L    +  + 
Sbjct: 267 LKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.6 bits (179), Expect = 4e-15
 Identities = 36/155 (23%), Positives = 73/155 (47%), Gaps = 12/155 (7%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             LN+ + N   +  S L N++ L  L ++ +++    P  I  +  L ++SL  N++  
Sbjct: 135 YSLNLGA-NHNLSDLSPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
             P    ++L  L + +  +N      P  ++N T L +L +  N  +   P  + NL++
Sbjct: 192 ISP---LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQ 244

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           L  L IG N++         +LT+L+  ++ +N +
Sbjct: 245 LTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQI 277

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 72.2 bits (178), Expect = 5e-15
 Identities = 32/156 (20%), Positives = 63/156 (40%), Gaps = 11/156 (7%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
                    +    P  + N++ L SL +  N+++   P  +  +  L  + +G N++S 
Sbjct: 202 HYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD 257

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
            I      +L  L+ L++  N       S L+N + L +L L  N         IG LT 
Sbjct: 258 -INA--VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN 312

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           L  L++  N +    P    +L++++        ++
Sbjct: 313 LTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 71.0 bits (175), Expect = 2e-14
 Identities = 39/159 (24%), Positives = 74/159 (46%), Gaps = 13/159 (8%)

Query: 87  NISSLNLRG---TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           +I+ L + G        +  L++L+ LNL+ N+++   P +      L N+ +G NK++ 
Sbjct: 45  SITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLV--KLTNLYIGTNKIT- 101

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
              + +  NL  L  L L+ +      P  L+N T + +L+L  N         + N+T 
Sbjct: 102 -DISAL-QNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLS-DLSPLSNMTG 156

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI 242
           L  L +  ++++   P    NLT+L   SL  N ++ + 
Sbjct: 157 LNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDIS 193

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 70.3 bits (173), Expect = 3e-14
 Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 12/157 (7%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
                +   ++   +      L S+  L ++  +++ SI   I  +  L+ ++L  N+++
Sbjct: 24  GIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQIT 79

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
              P    SNL  L  L +  N       S L N T LR L L  ++ S      + NLT
Sbjct: 80  DISPL---SNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISD--ISPLANLT 132

Query: 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           K+  L +GAN    ++     N+T L   ++  + ++
Sbjct: 133 KMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 74.6 bits (184), Expect = 1e-15
 Identities = 44/164 (26%), Positives = 69/164 (42%), Gaps = 13/164 (7%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           T L++++  +    P  L  L+ L  L L  N++S   P  +  +  L N+ L +N+L  
Sbjct: 246 TDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 301

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
             P    SNL  L +L+L  N      P  +S+ T L+ L    N  S      + NLT 
Sbjct: 302 ISP---ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTN 354

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
           +  L  G N++    P    NLT + Q  L         +N+  
Sbjct: 355 INWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKA 396

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 73.5 bits (181), Expect = 3e-15
 Identities = 45/155 (29%), Positives = 72/155 (46%), Gaps = 13/155 (8%)

Query: 87  NISSLNLRGTI--PSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQ 144
           ++  L+    +     L NL++L+ L++S N++S    S +  +  L+++    N++S  
Sbjct: 157 SLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDI 214

Query: 145 IPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKL 204
            P      L  L+ LSL+ N        TL++ T L  L LA N  S   P  +  LTKL
Sbjct: 215 TP---LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKL 267

Query: 205 KVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
             L +GAN++    P     LT L    L  N L+
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLE 300

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 69.6 bits (171), Expect = 7e-14
 Identities = 36/155 (23%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           T L + +  +    P  L  L++L +L L+ N+L    P +      L  ++L  N +S 
Sbjct: 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLK--NLTYLTLYFNNISD 323

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
             P    S+L  L+ L    N       S+L+N T +  LS  +N  S      + NLT+
Sbjct: 324 ISPV---SSLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQISD--LTPLANLTR 376

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           +  L +              N++        T  L
Sbjct: 377 ITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 14/156 (8%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
           VT L    L +       +  L++L  +N S N+L+   P  +  +  L ++ +  N+++
Sbjct: 48  VTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIA 103

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
              P    +NL  L  L+L  N         L N T L  L L+ N  S      +  LT
Sbjct: 104 DITPL---ANLTNLTGLTLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLT 156

Query: 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
            L+ L  G N++    P    NLT LE+  + +N +
Sbjct: 157 SLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKV 189

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 68.5 bits (168), Expect = 1e-13
 Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 14/156 (8%)

Query: 87  NISSLNLRG---TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
            +  L++     +  S L  L++L+SL  + N++S   P  I T   L  +SL  N+L  
Sbjct: 178 TLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD 235

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
                + ++L  L  L L+ N      P  LS  T L  L L  N  S   P  +  LT 
Sbjct: 236 --IGTL-ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTA 288

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           L  L +  N+L+   P    NL  L   +L  NN+ 
Sbjct: 289 LTNLELNENQLEDISP--ISNLKNLTYLTLYFNNIS 322

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 66.5 bits (163), Expect = 7e-13
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 14/159 (8%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           T L + +  +    P  L NL++L  L LS N +S    S +  + +L+ +S G N+++ 
Sbjct: 115 TGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTD 169

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
             P    +NL  LE L +S N       S L+  T L +L    N  S   P  +G LT 
Sbjct: 170 LKPL---ANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITP--LGILTN 222

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI 242
           L  L +  N+L+        +LT L    L  N +  + 
Sbjct: 223 LDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA 259

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 63.8 bits (156), Expect = 7e-12
 Identities = 29/157 (18%), Positives = 53/157 (33%), Gaps = 12/157 (7%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
            +    I+       I      L+      L    ++ ++  T      +  +   +  +
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVSQTDLD--QVTTLQADRLGI 58

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
                  +   L  L  ++ S N      P  L N T L  + +  N  +   P  + NL
Sbjct: 59  K--SIDGV-EYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANL 111

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           T L  L +  N++    P    NLT L +  L +N +
Sbjct: 112 TNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTI 146

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 6/112 (5%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             L+     +    P  L NL+ +  L L+    + + P       ++ N          
Sbjct: 356 NWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT-NAPVNYKANVSIPNTVKNVTGAL- 411

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP 195
             P  I S+        ++ N+            +   T+      FSG V 
Sbjct: 412 IAPATI-SDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 73.5 bits (181), Expect = 2e-15
 Identities = 26/166 (15%), Positives = 60/166 (36%), Gaps = 7/166 (4%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK 140
             +  L+ ++ N+   +          +++ L+ N+++            ++ + L  N+
Sbjct: 99  PSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGN 200
           +       + ++   LE L+L  N  +  +         L+TL L+ N  +  +  E  +
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIYD-VKG-QVVFAKLKTLDLSSNKLA-FMGPEFQS 212

Query: 201 LTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFL 246
              +  + +  N+L   I +       LE F L  N      L   
Sbjct: 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 28/180 (15%), Positives = 63/180 (35%), Gaps = 24/180 (13%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK 138
           + +R  +  ++  +L+  + S   +  +++ L+LS N LS    + +     L+ ++L  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 139 NKLSGQIP------------------TNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL 180
           N L  +                      +    P +E L  + N       S        
Sbjct: 68  NVLY-ETLDLESLSTLRTLDLNNNYVQEL-LVGPSIETLHAANNNISRVSCSRGQG---K 122

Query: 181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG-EIPREFGNLTELEQFSLPTNNLQ 239
           + + LA N  +     + G  ++++ L +  N +          +   LE  +L  N + 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 68.1 bits (167), Expect = 1e-13
 Identities = 23/156 (14%), Positives = 54/156 (34%), Gaps = 7/156 (4%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG-SIPSTIFTIYTLKNVSLGKNKLS 142
             + +++  +        G  S +Q L+L  N +   +      +  TL++++L  N + 
Sbjct: 123 KNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY 182

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
             +   +      L+ L LS N     +     +   +  +SL  N     + + +    
Sbjct: 183 -DVKGQV--VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQ 237

Query: 203 KLKVLYIGANRLQ-GEIPREFGNLTELEQFSLPTNN 237
            L+   +  N    G +   F     ++  +  T  
Sbjct: 238 NLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 8/132 (6%)

Query: 97  IPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL 156
           I     N +  +   ++ + L  ++ S   + + +K + L  N LS QI     +    L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG 216
           E L+LS N+ +      L + + LRTL L  N        E+     ++ L+   N +  
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 217 EIPREFGNLTEL 228
                      +
Sbjct: 114 VSCSRGQGKKNI 125

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 13/71 (18%), Positives = 24/71 (33%)

Query: 169 GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL 228
            I     N    +   +  +    A+     +   +K L +  N L      +    T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 229 EQFSLPTNNLQ 239
           E  +L +N L 
Sbjct: 61  ELLNLSSNVLY 71

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.6 bits (181), Expect = 3e-15
 Identities = 43/159 (27%), Positives = 71/159 (44%), Gaps = 8/159 (5%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLS 142
            V +  S +   +IPS L   ++++SL+LS N+++  I          L+ + L  ++++
Sbjct: 8   GVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKIT-YIGHGDLRACANLQVLILKSSRIN 63

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG-AVPREIGNL 201
             I  +   +L  LE L LS N       S     + L+ L+L  N +    V     NL
Sbjct: 64  -TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 202 TKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
           T L+ L IG      EI R  F  LT L +  +   +L+
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR 161

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 72.5 bits (178), Expect = 8e-15
 Identities = 36/160 (22%), Positives = 69/160 (43%), Gaps = 5/160 (3%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKL 141
           +  L++S   +       L   ++LQ L L  +R++ +I    F     L+++ L  N L
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHL 86

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHG-GIPSTLSNCTYLRTLSLAYNDFSGAVPRE-IG 199
           S  + ++    L  L++L+L  N +   G+ S   N T L+TL +   +    + R    
Sbjct: 87  S-SLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA 145

Query: 200 NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
            LT L  L I A  L+    +   ++ ++   +L  +   
Sbjct: 146 GLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.8 bits (166), Expect = 3e-13
 Identities = 27/159 (16%), Positives = 55/159 (34%), Gaps = 1/159 (0%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKLS 142
             L++S  +L     S  G LSSL+ LNL  N       +++F  +  L+ + +G  +  
Sbjct: 77  EHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETF 136

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
            +I     + L  L  L +           +L +   +  L+L  ++ +  +      L+
Sbjct: 137 SEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196

Query: 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241
            ++ L +    L                         V+
Sbjct: 197 SVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVL 235

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 66.3 bits (162), Expect = 1e-12
 Identities = 30/141 (21%), Positives = 50/141 (35%), Gaps = 5/141 (3%)

Query: 103 NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS 162
           +  +    +      + SIPS +     +K++ L  NK++  I          L+ L L 
Sbjct: 3   SCDASGVCDGRSRSFT-SIPSGLTA--AMKSLDLSFNKIT-YIGHGDLRACANLQVLILK 58

Query: 163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG-EIPRE 221
            +  +        +   L  L L+ N  S       G L+ LK L +  N  Q   +   
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118

Query: 222 FGNLTELEQFSLPTNNLQVMI 242
           F NLT L+   +        I
Sbjct: 119 FPNLTNLQTLRIGNVETFSEI 139

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 35/240 (14%), Positives = 83/240 (34%), Gaps = 15/240 (6%)

Query: 11  SIFLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCN 70
               +L  +  + L          S +   +    +K  +    +    +++N    +  
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK-KLAFRGSVLTDESFNELLKLLR 248

Query: 71  WTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG----SIPSTIF 126
           +     +V     T+  +   N   +    +  L  ++++ +    +         ST++
Sbjct: 249 YILELSEVEFDDCTLNGLGDFNP--SESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306

Query: 127 TIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPST---LSNCTYLRT 182
           ++   +K +++  +K+   +P +   +L  LEFL LS N+                 L+T
Sbjct: 307 SLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQT 365

Query: 183 LSLAYNDFS--GAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240
           L L+ N           +  L  L  L I  N     +P       ++   +L +  ++V
Sbjct: 366 LVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV 424

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 7e-10
 Identities = 28/132 (21%), Positives = 49/132 (37%), Gaps = 11/132 (8%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           T L+IS       +P        ++ LNLS   +   + + I    TL+ + +  N L  
Sbjct: 390 TSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQ--TLEVLDVSNNNL-- 443

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
               +    LP L+ L +S N     +P   S    L  + ++ N            LT 
Sbjct: 444 ---DSFSLFLPRLQELYISRNKLKT-LPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTS 498

Query: 204 LKVLYIGANRLQ 215
           L+ +++  N   
Sbjct: 499 LQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 57.8 bits (140), Expect = 7e-10
 Identities = 26/169 (15%), Positives = 56/169 (33%), Gaps = 8/169 (4%)

Query: 87  NISSLNLRG------TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKN 139
           ++  LNL G       + S   NL++LQ+L +        I    F  + +L  + +   
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 140 KLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG 199
            L     +    ++  +  L+L L+     +       + +R L L   + +      + 
Sbjct: 159 SLR-NYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP 217

Query: 200 NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248
                  +   A R        F  L +L ++ L  + ++         
Sbjct: 218 VDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGL 266

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.7 bits (137), Expect = 2e-09
 Identities = 37/161 (22%), Positives = 62/161 (38%), Gaps = 13/161 (8%)

Query: 81  HRVTVLNISSLNLR--GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK 138
             +  L +S  +LR        L  L +L SL++S N     +P +      ++ ++L  
Sbjct: 361 PSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSS 419

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
             +   + T I      LE L +S N         L     L+ L ++ N     +P + 
Sbjct: 420 TGIR-VVKTCI---PQTLEVLDVSNNNL-DSFSLFLPR---LQELYISRNKLK-TLP-DA 469

Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
                L V+ I  N+L+      F  LT L++  L TN   
Sbjct: 470 SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 56.3 bits (136), Expect = 2e-09
 Identities = 34/161 (21%), Positives = 59/161 (36%), Gaps = 9/161 (5%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKLS 142
            VL + S  +         +L SL+ L+LS N LS S+ S+ F  + +LK ++L  N   
Sbjct: 53  QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIP-STLSNCTYLRTLSLAYNDFSG---AVPREI 198
               T++  NL  L+ L +        I     +  T L  L +             + I
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSI 171

Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
            ++  L +     +     +      L+ +    L   NL 
Sbjct: 172 RDIHHLTLHL---SESAFLLEIFADILSSVRYLELRDTNLA 209

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 4/111 (3%)

Query: 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA 193
                   +  IP+ + + +   + L LS N         L  C  L+ L L  +  +  
Sbjct: 10  CDGRSRSFT-SIPSGLTAAM---KSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTI 65

Query: 194 VPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILN 244
                 +L  L+ L +  N L       FG L+ L+  +L  N  Q + + 
Sbjct: 66  EGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVT 116

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 21/164 (12%), Positives = 52/164 (31%), Gaps = 7/164 (4%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             L +        +      LSS++ L L    L+    S +        +     + S 
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS- 233

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
            +     + L  L    L L+           +CT         ++              
Sbjct: 234 VLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFNPSESDVVSELGKVETVT 287

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
           ++ L+I    L  ++   +  L ++++ ++  + + ++  +F Q
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQ 331

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 25/181 (13%), Positives = 54/181 (29%), Gaps = 20/181 (11%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLK-------- 132
             V  L +   NL     S L        +     R S     +   +  L         
Sbjct: 196 SSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSE 255

Query: 133 ----NVSLGKNKLSGQIPTNICSNLPFLEFLSL-----SLNMFHGGIPSTLSNCTYLRTL 183
               + +L          +++ S L  +E +++             + +  S    ++ +
Sbjct: 256 VEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRI 315

Query: 184 SLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE---FGNLTELEQFSLPTNNLQV 240
           ++  +           +L  L+ L +  N +  E  +     G    L+   L  N+L+ 
Sbjct: 316 TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS 375

Query: 241 M 241
           M
Sbjct: 376 M 376

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 72.5 bits (178), Expect = 6e-15
 Identities = 46/158 (29%), Positives = 67/158 (42%), Gaps = 6/158 (3%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKLS 142
             L +    L          LS L+ L L  N +  SIPS  F  I +L+ + LG+ K  
Sbjct: 115 NTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRL 173

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
             I       L  L +L+L++      IP  L+    L  L L+ N  S   P     L 
Sbjct: 174 SYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLM 231

Query: 203 KLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
            L+ L++  +++Q  I R  F NL  L + +L  NNL 
Sbjct: 232 HLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNLT 268

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 38/163 (23%), Positives = 62/163 (38%), Gaps = 6/163 (3%)

Query: 80  SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGK 138
           S    +LN+    ++    +   +L  L+ L LS N +  +I    F  +  L  + L  
Sbjct: 63  STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFD 121

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
           N+L+  IP      L  L+ L L  N          +    LR L L        +    
Sbjct: 122 NRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 199 -GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240
              L+ L+ L +    L+ EIP     L +L++  L  N+L  
Sbjct: 181 FEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 69.0 bits (169), Expect = 1e-13
 Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 8/164 (4%)

Query: 81  HRVTVLNISSLNLRGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGK 138
             + +L +S  ++R TI       L++L +L L  NRL+ +IP+  F  +  LK + L  
Sbjct: 88  RHLEILQLSRNHIR-TIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELWLRN 145

Query: 139 NKLSGQIPTNICSNLPFLEFLSLS-LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE 197
           N +   IP+   + +P L  L L  L              + LR L+LA  +    +P  
Sbjct: 146 NPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-N 202

Query: 198 IGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM 241
           +  L KL  L +  N L    P  F  L  L++  +  + +QV+
Sbjct: 203 LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVI 246

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 38/162 (23%), Positives = 62/162 (38%), Gaps = 8/162 (4%)

Query: 81  HRVTVLNISSLNLRGTIPSQL-GNLSSLQSLNLS-CNRLSGSIPSTIFT-IYTLKNVSLG 137
            ++  L + +  +  +IPS     + SL+ L+L    RLS  I    F  +  L+ ++L 
Sbjct: 136 SKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLS-YISEGAFEGLSNLRYLNLA 193

Query: 138 KNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE 197
              L  +IP    + L  L+ L LS N      P +     +L+ L +  +         
Sbjct: 194 MCNLR-EIPN--LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA 250

Query: 198 IGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
             NL  L  + +  N L       F  L  LE+  L  N   
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.6 bits (176), Expect = 6e-15
 Identities = 35/144 (24%), Positives = 52/144 (36%), Gaps = 5/144 (3%)

Query: 98  PSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKLSGQIPTNICSNLPFL 156
           P+    L  L +L+L    L   +   +F  +  L+ + L  N L   +P +   +L  L
Sbjct: 98  PATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNL 155

Query: 157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG 216
             L L  N               L  L L  N  +   P    +L +L  LY+ AN L  
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS- 214

Query: 217 EIPRE-FGNLTELEQFSLPTNNLQ 239
            +P E    L  L+   L  N   
Sbjct: 215 ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 71.2 bits (175), Expect = 8e-15
 Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 6/162 (3%)

Query: 81  HRVTVLNISSLNLRGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGK 138
             +T+L + S  L   I +     L+ L+ L+LS N    S+    F     L  + L +
Sbjct: 56  RNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPS-TLSNCTYLRTLSLAYNDFSGAVPRE 197
             L  ++   +   L  L++L L  N     +P  T  +   L  L L  N  S    R 
Sbjct: 115 CGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERA 172

Query: 198 IGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
              L  L  L +  NR+    P  F +L  L    L  NNL 
Sbjct: 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.3 bits (170), Expect = 5e-14
 Identities = 31/157 (19%), Positives = 50/157 (31%), Gaps = 2/157 (1%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKLS 142
             + +    +     +      +L  L L  N L+  I +  FT +  L+ + L  N   
Sbjct: 35  QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQL 93

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
             +       L  L  L L         P        L+ L L  N           +L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
            L  L++  NR+     R F  L  L++  L  N + 
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 68.1 bits (167), Expect = 9e-14
 Identities = 41/170 (24%), Positives = 66/170 (38%), Gaps = 11/170 (6%)

Query: 75  ACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKN 133
           AC  ++      +     L+  +P  +   ++ Q + L  NR+S  +P+  F     L  
Sbjct: 5   ACVCYNEPKVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTI 60

Query: 134 VSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPS-TLSNCTYLRTLSLAYNDFSG 192
           + L  N L+ +I     + L  LE L LS N     +   T      L TL L       
Sbjct: 61  LWLHSNVLA-RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ- 118

Query: 193 AVPREI-GNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQV 240
            +   +   L  L+ LY+  N LQ  +P + F +L  L    L  N +  
Sbjct: 119 ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS 167

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 72.6 bits (178), Expect = 8e-15
 Identities = 26/166 (15%), Positives = 59/166 (35%), Gaps = 7/166 (4%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK 140
             +  L+ ++ N    +          +++ L+ N+++            ++ + L  N+
Sbjct: 99  PSIETLHAAN-NNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE 155

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGN 200
           +       + ++   LE L+L  N  +  +         L+TL L+ N  +  +  E  +
Sbjct: 156 IDTVNFAELAASSDTLEHLNLQYNFIY-DVKG-QVVFAKLKTLDLSSNKLA-FMGPEFQS 212

Query: 201 LTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFL 246
              +  + +  N+L   I +       LE F L  N      L   
Sbjct: 213 AAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDF 257

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 70.6 bits (173), Expect = 3e-14
 Identities = 31/161 (19%), Positives = 63/161 (39%), Gaps = 11/161 (6%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK 138
           + +R  +  ++  +L+  + S   +  +++ L+LS N LS    + +     L+ ++L  
Sbjct: 8   NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
           N L   +      +L  L  L L+ N         L     + TL  A N+ S  V    
Sbjct: 68  NVLYETLDL---ESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-RVS--C 116

Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
                 K +Y+  N++      + G  + ++   L  N + 
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID 157

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 64.9 bits (158), Expect = 3e-12
 Identities = 27/132 (20%), Positives = 50/132 (37%), Gaps = 8/132 (6%)

Query: 97  IPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL 156
           I     N +  +   ++ + L  ++ S   + + +K + L  N LS QI     +    L
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-QISAADLAPFTKL 60

Query: 157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG 216
           E L+LS N+ +      L + + LRTL L  N        E+     ++ L+   N +  
Sbjct: 61  ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISR 113

Query: 217 EIPREFGNLTEL 228
                      +
Sbjct: 114 VSCSRGQGKKNI 125

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 18/91 (19%), Positives = 37/91 (40%), Gaps = 2/91 (2%)

Query: 149 ICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLY 208
           I  N    +   ++ +     + S   +   ++ L L+ N  S     ++   TKL++L 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 209 IGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           + +N L      +  +L+ L    L  N +Q
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNYVQ 93

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 16/169 (9%), Positives = 41/169 (24%), Gaps = 10/169 (5%)

Query: 87  NISSLNLRG----TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
            ++ ++LR      I   L    +L+  +L  N          F+    +  ++ K  + 
Sbjct: 215 GVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN-QRVQTVAKQTVK 273

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG--- 199
            ++                                  L+    A     G+    +    
Sbjct: 274 -KLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECER 332

Query: 200 -NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
            N  + + +     + +  I +                 L   + N  +
Sbjct: 333 ENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.4 bits (110), Expect = 4e-06
 Identities = 13/71 (18%), Positives = 24/71 (33%)

Query: 169 GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL 228
            I     N    +   +  +    A+     +   +K L +  N L      +    T+L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 229 EQFSLPTNNLQ 239
           E  +L +N L 
Sbjct: 61  ELLNLSSNVLY 71

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 30/148 (20%), Positives = 57/148 (38%), Gaps = 13/148 (8%)

Query: 103 NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS 162
            +  L  + ++   ++ +IP  +    +L  + L  NK++ ++       L  L  L LS
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGLPP--SLTELHLDGNKIT-KVDAASLKGLNNLAKLGLS 224

Query: 163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE- 221
            N        +L+N  +LR L L  N     VP  + +   ++V+Y+  N +   I    
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIGSND 282

Query: 222 ------FGNLTELEQFSLPTNNLQVMIL 243
                           SL +N +Q   +
Sbjct: 283 FCPPGYNTKKASYSGVSLFSNPVQYWEI 310

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 70.4 bits (173), Expect = 2e-14
 Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 15/164 (9%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNK 140
           +++ + I+  N+  TIP  L    SL  L+L  N+++  + +     +  L  + L  N 
Sbjct: 172 KLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNS 227

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG------AV 194
           +S  +     +N P L  L L+ N     +P  L++  Y++ + L  N+ S         
Sbjct: 228 IS-AVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285

Query: 195 PREIGNLTKLKVLYIGANRLQ-GEIPRE-FGNLTELEQFSLPTN 236
           P           + + +N +Q  EI    F  +       L   
Sbjct: 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 65.4 bits (160), Expect = 1e-12
 Identities = 31/155 (20%), Positives = 59/155 (38%), Gaps = 12/155 (7%)

Query: 87  NISSLNLRGTIPSQLGNLSSLQSLNLSCNRL-SGSIPSTIFT-IYTLKNVSLGKNKLSGQ 144
            I+ +       S    L+ +  + L  N L S  I +  F  +  L  + +    ++  
Sbjct: 132 EITKVR-----KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-T 185

Query: 145 IPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKL 204
           IP  +  +L     L L  N       ++L     L  L L++N  S      + N   L
Sbjct: 186 IPQGLPPSL---TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL 242

Query: 205 KVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           + L++  N+L  ++P    +   ++   L  NN+ 
Sbjct: 243 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 59.6 bits (145), Expect = 1e-10
 Identities = 33/161 (20%), Positives = 61/161 (37%), Gaps = 13/161 (8%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKL 141
             +L++ +  +         NL +L +L L  N++S  I    F  +  L+ + L KN+L
Sbjct: 54  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLSKNQL 112

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAV--PREIG 199
             ++P  +      L+ L +  N       S  +    +  + L  N    +        
Sbjct: 113 K-ELPEKMPKT---LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 200 NLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
            + KL  + I    +   IP+    +LTEL    L  N + 
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGLPPSLTELH---LDGNKIT 205

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 8/115 (6%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK 140
           + +  L +S  ++       L N   L+ L+L+ N+L   +P  +     ++ V L  N 
Sbjct: 216 NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNN 274

Query: 141 LS-----GQIPTNICSNLPFLEFLSLSLNMFHGGI--PSTLSNCTYLRTLSLAYN 188
           +S        P    +       +SL  N        PST         + L   
Sbjct: 275 ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.5 bits (173), Expect = 3e-14
 Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 7/157 (4%)

Query: 86  LNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLSGQ 144
           ++I           +   L++ + +    + +   +P+ +   +  ++ ++L   ++  +
Sbjct: 26  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-E 83

Query: 145 IPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI-GNLTK 203
           I T   +    ++ L +  N      P    N   L  L L  ND S ++PR I  N  K
Sbjct: 84  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK 142

Query: 204 LKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
           L  L +  N L+  I  + F   T L+   L +N L 
Sbjct: 143 LTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 178

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 12/151 (7%)

Query: 100 QLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159
            L  + SL   N+S N LS ++   I     ++ +    N ++  +   +   L     L
Sbjct: 181 DLSLIPSLFHANVSYNLLS-TLAIPIA----VEELDASHNSIN-VVRGPVNVEL---TIL 231

Query: 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP 219
            L  N       + L N   L  + L+YN+    +      + +L+ LYI  NRL   + 
Sbjct: 232 KLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 288

Query: 220 REFGNLTELEQFSLPTNNLQVMILNFLQFYS 250
                +  L+   L  N+L  +  N  QF  
Sbjct: 289 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 67.4 bits (165), Expect = 3e-13
 Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 6/164 (3%)

Query: 77  DVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVS 135
           D+  +   ++   +  +R    + L +   ++ LNL+  ++   I +  F     ++ + 
Sbjct: 41  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLY 99

Query: 136 LGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP 195
           +G N +   +P ++  N+P L  L L  N           N   L TLS++ N+      
Sbjct: 100 MGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 158

Query: 196 REIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
                 T L+ L + +NRL   +      +  L   ++  N L 
Sbjct: 159 DTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 199

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 65.5 bits (160), Expect = 2e-12
 Identities = 34/160 (21%), Positives = 60/160 (37%), Gaps = 11/160 (6%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKN 139
            +V +LN++ L +            ++Q L +  N +   +P  +F     L  + L +N
Sbjct: 69  RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERN 127

Query: 140 KLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG 199
            LS  +P  I  N P L  LS+S N        T    T L+ L L+ N  +     ++ 
Sbjct: 128 DLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLS 183

Query: 200 NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
            +  L    +  N L             +E+     N++ 
Sbjct: 184 LIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN 218

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 64.7 bits (158), Expect = 3e-12
 Identities = 32/158 (20%), Positives = 57/158 (36%), Gaps = 11/158 (6%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
            V  L+ S  ++   +   +     L  L L  N L+    + +     L  V L  N+L
Sbjct: 206 AVEELDASHNSIN-VVRGPV--NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNEL 260

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
             +I  +    +  LE L +S N     +         L+ L L++N     V R     
Sbjct: 261 E-KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF 317

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
            +L+ LY+  N +   +         L+  +L  N+  
Sbjct: 318 DRLENLYLDHNSIV-TLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 56.2 bits (136), Expect = 2e-09
 Identities = 36/160 (22%), Positives = 67/160 (41%), Gaps = 16/160 (10%)

Query: 81  HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK 140
            ++T L++S+ NL           +SLQ+L LS NRL+  +  ++    +L + ++  N 
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIP--SLFHANVSYNL 197

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGN 200
           LS        +    +E L  S N  +  +   +     L  L L +N+ +      + N
Sbjct: 198 LS------TLAIPIAVEELDASHNSINV-VRGPV--NVELTILKLQHNNLTD--TAWLLN 246

Query: 201 LTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
              L  + +  N L+ +I    F  +  LE+  +  N L 
Sbjct: 247 YPGLVEVDLSYNELE-KIMYHPFVKMQRLERLYISNNRLV 285

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 8/95 (8%), Positives = 34/95 (35%), Gaps = 3/95 (3%)

Query: 145 IPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKL 204
           I +N+  +  F + + + +                 + ++   +         + +  ++
Sbjct: 13  IDSNLQYDCVFYD-VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 205 KVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNL 238
           ++L +   +++ EI    F     +++  +  N +
Sbjct: 72  ELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAI 105

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 70.2 bits (172), Expect = 4e-14
 Identities = 45/159 (28%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 84  TVLNISSLNLRGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKL 141
             L +    L   IPS     LS L+ L L  N +  SIPS  F  + +L  + LG+ K 
Sbjct: 126 NTLELFDNWLT-VIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKK 183

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
              I       L  L++L+L +      +P  L+    L  L ++ N F    P     L
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 202 TKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
           + LK L++  +++   I R  F  L  L + +L  NNL 
Sbjct: 242 SSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 69.8 bits (171), Expect = 6e-14
 Identities = 34/163 (20%), Positives = 55/163 (33%), Gaps = 6/163 (3%)

Query: 80  SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGK 138
                 LN+   N++        +L  L+ L L  N +   I    F  + +L  + L  
Sbjct: 74  PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFD 132

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
           N L+  IP+     L  L  L L  N          +    L  L L        +    
Sbjct: 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGA 191

Query: 199 -GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240
              L  LK L +G   ++ ++P     L  LE+  +  N+   
Sbjct: 192 FEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPE 232

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 68.2 bits (167), Expect = 2e-13
 Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 8/163 (4%)

Query: 81  HRVTVLNISSLNLRGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGK 138
           H + VL +   ++R  I       L+SL +L L  N L+  IPS  F  +  L+ + L  
Sbjct: 99  HHLEVLQLGRNSIR-QIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELWLRN 156

Query: 139 NKLSGQIPTNICSNLPFLEFLSLS-LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE 197
           N +   IP+   + +P L  L L  L                L+ L+L   +    +P  
Sbjct: 157 NPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-N 213

Query: 198 IGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240
           +  L  L+ L +  N      P  F  L+ L++  +  + + +
Sbjct: 214 LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 27/106 (25%), Positives = 45/106 (42%), Gaps = 5/106 (4%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKLS 142
             LN+   N++  +P+ L  L  L+ L +S N     I    F  + +LK + +  +++S
Sbjct: 199 KYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVS 255

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYN 188
             I  N    L  L  L+L+ N          +   YL  L L +N
Sbjct: 256 -LIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNK 140
            +  L +S  +     P     LSSL+ L +  +++S  I    F  + +L  ++L  N 
Sbjct: 219 GLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVS-LIERNAFDGLASLVELNLAHNN 277

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMFH 167
           LS  +P ++ + L +L  L L  N ++
Sbjct: 278 LS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.9 bits (171), Expect = 5e-14
 Identities = 38/157 (24%), Positives = 62/157 (39%), Gaps = 25/157 (15%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
           +T L I   NL  ++P+    L   ++L +S N+L+ S+P     +  L   S     L 
Sbjct: 63  ITTLVIPDNNLT-SLPALPPEL---RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLP 117

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
             +P+        L  L +  N     +P        L+ LS++ N  + ++P     L 
Sbjct: 118 -ALPSG-------LCKLWIFGNQLT-SLPVLPPG---LQELSVSDNQLA-SLPALPSELC 164

Query: 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           KL       N+L   +P     L EL   S+  N L 
Sbjct: 165 KLWAYN---NQLT-SLPMLPSGLQEL---SVSDNQLA 194

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 69.5 bits (170), Expect = 9e-14
 Identities = 34/171 (19%), Positives = 61/171 (35%), Gaps = 29/171 (16%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             L +S   L  ++P     L  L   +     L             L  + +  N+L+ 
Sbjct: 84  RTLEVSGNQLT-SLPVLPPGLLELSIFSNPLTHLPALPSG-------LCKLWIFGNQLT- 134

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
            +P         L+ LS+S N     +P+  S    L  L    N  + ++P     L +
Sbjct: 135 SLPVLPPG----LQELSVSDNQL-ASLPALPSE---LCKLWAYNNQLT-SLPMLPSGLQE 185

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQF-----SLPTN--NLQVMILNFLQ 247
              L +  N+L   +P     L +L  +     SLP     L+ +I++  +
Sbjct: 186 ---LSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR 232

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 67.2 bits (164), Expect = 5e-13
 Identities = 30/164 (18%), Positives = 59/164 (35%), Gaps = 18/164 (10%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             L++S   L  ++P+    L  L + N     L             LK + +  N+L+ 
Sbjct: 184 QELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPALPSG-------LKELIVSGNRLT- 234

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
            +P         L+ L +S N     +P   S    L +LS+  N  +  +P  + +L+ 
Sbjct: 235 SLPVLPSE----LKELMVSGNRL-TSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLSS 285

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
              + +  N L     +    +T    +S P     +   +  +
Sbjct: 286 ETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 63.0 bits (153), Expect = 1e-11
 Identities = 29/136 (21%), Positives = 48/136 (35%), Gaps = 20/136 (14%)

Query: 104 LSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL 163
            +    LN+  + L+ ++P  +     +  + +  N L     T++ +  P L  L +S 
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNL-----TSLPALPPELRTLEVSG 90

Query: 164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFG 223
           N     +P        L   S          P     L K   L+I  N+L   +P    
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHL----PALPSGLCK---LWIFGNQLT-SLPVLPP 141

Query: 224 NLTELEQFSLPTNNLQ 239
            L EL   S+  N L 
Sbjct: 142 GLQEL---SVSDNQLA 154

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 70.0 bits (171), Expect = 6e-14
 Identities = 32/157 (20%), Positives = 63/157 (40%), Gaps = 7/157 (4%)

Query: 86  LNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLSGQ 144
           ++I           +   L++ + +    + +   +P+ +   +  ++ ++L   ++  +
Sbjct: 32  VHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-E 89

Query: 145 IPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI-GNLTK 203
           I T   +    ++ L +  N      P    N   L  L L  ND S ++PR I  N  K
Sbjct: 90  IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPK 148

Query: 204 LKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
           L  L +  N L+  I  + F   T L+   L +N L 
Sbjct: 149 LTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT 184

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.0 bits (166), Expect = 2e-13
 Identities = 32/164 (19%), Positives = 65/164 (39%), Gaps = 6/164 (3%)

Query: 77  DVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVS 135
           D+  +   ++   +  +R    + L +   ++ LNL+  ++   I +  F     ++ + 
Sbjct: 47  DITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLY 105

Query: 136 LGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP 195
           +G N +   +P ++  N+P L  L L  N           N   L TLS++ N+      
Sbjct: 106 MGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIED 164

Query: 196 REIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
                 T L+ L + +NRL   +      +  L   ++  N L 
Sbjct: 165 DTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLLS 205

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 66.9 bits (163), Expect = 7e-13
 Identities = 34/151 (22%), Positives = 58/151 (38%), Gaps = 12/151 (7%)

Query: 100 QLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159
            L  + SL   N+S N LS ++   I     ++ +    N ++  +   +   L     L
Sbjct: 187 DLSLIPSLFHANVSYNLLS-TLAIPIA----VEELDASHNSIN-VVRGPVNVEL---TIL 237

Query: 160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP 219
            L  N       + L N   L  + L+YN+    +      + +L+ LYI  NRL   + 
Sbjct: 238 KLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALN 294

Query: 220 REFGNLTELEQFSLPTNNLQVMILNFLQFYS 250
                +  L+   L  N+L  +  N  QF  
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 63.4 bits (154), Expect = 1e-11
 Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 11/159 (6%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNK 140
           +V +LN++ L +            ++Q L +  N +   +P  +F  +  L  + L +N 
Sbjct: 76  QVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERND 134

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGN 200
           LS  +P  I  N P L  LS+S N        T    T L+ L L+ N  +     ++  
Sbjct: 135 LS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSL 190

Query: 201 LTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           +  L    +  N L             +E+     N++ 
Sbjct: 191 IPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 20/138 (14%), Positives = 44/138 (31%), Gaps = 4/138 (2%)

Query: 104 LSSLQSLNLSCNRLS-GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICS-NLPFLEFLSL 161
           +   Q  N+   +     I S +       +V +  +  +  +        L   + ++ 
Sbjct: 1   VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHI--DMQTQDVYFGFEDITLNNQKIVTF 58

Query: 162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE 221
             +       + L +   +  L+L                  ++ LY+G N ++   P  
Sbjct: 59  KNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV 118

Query: 222 FGNLTELEQFSLPTNNLQ 239
           F N+  L    L  N+L 
Sbjct: 119 FQNVPLLTVLVLERNDLS 136

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 47.6 bits (113), Expect = 2e-06
 Identities = 31/167 (18%), Positives = 59/167 (35%), Gaps = 8/167 (4%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
            +  +++S   L   +      +  L+ L +S NRL  ++      I TLK + L  N L
Sbjct: 255 GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVLDLSHNHL 313

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
              +  N       LE L L  N       ST      L+ L+L++ND+     R +   
Sbjct: 314 L-HVERNQ-PQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWDCNSLRAL--F 366

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF 248
             +    +       +I  +  +    ++   P  +  +  +     
Sbjct: 367 RNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSV 413

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 67.7 bits (166), Expect = 2e-13
 Identities = 30/143 (20%), Positives = 52/143 (36%), Gaps = 6/143 (4%)

Query: 98  PSQLGNLSSLQSLNLSCNRL-SGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL 156
                 L ++  + +  N L +       F    L  + + + KL+  IP ++   L   
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETL--- 195

Query: 157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG 216
             L L  N         L   + L  L L +N         +  L  L+ L++  N+L  
Sbjct: 196 NELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254

Query: 217 EIPREFGNLTELEQFSLPTNNLQ 239
            +P    +L  L+   L TNN+ 
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 33/161 (20%), Positives = 56/161 (34%), Gaps = 15/161 (9%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNK 140
           ++  L IS   L   IP  L    +L  L+L  N++  +I          L  + LG N+
Sbjct: 173 KLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG------AV 194
           +   I     S LP L  L L  N     +P+ L +   L+ + L  N+ +         
Sbjct: 229 IR-MIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNITKVGVNDFCP 286

Query: 195 PREIGNLTKLKVLYIGANRLQ-GEIPRE-FGNLTELEQFSL 233
                       + +  N +   E+    F  +T+      
Sbjct: 287 VGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.4 bits (134), Expect = 3e-09
 Identities = 29/182 (15%), Positives = 68/182 (37%), Gaps = 32/182 (17%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG----------------------- 119
            T+L++ + ++          L  L +L L  N++S                        
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV 115

Query: 120 SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLN-MFHGGIPSTLSNCT 178
            IP  + +  +L  + +  N++  ++P  + S L  +  + +  N + + G      +  
Sbjct: 116 EIPPNLPS--SLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNN 237
            L  L ++    +  +P+       L  L++  N++Q  I  E     ++L +  L  N 
Sbjct: 173 KLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQ 228

Query: 238 LQ 239
           ++
Sbjct: 229 IR 230

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.8 bits (109), Expect = 6e-06
 Identities = 22/113 (19%), Positives = 44/113 (38%), Gaps = 10/113 (8%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             L +    +R      L  L +L+ L+L  N+LS  +P+ +  +  L+ V L  N ++ 
Sbjct: 220 YRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT- 277

Query: 144 QIPTN------ICSNLPFLEFLSLSLN-MFHGGI-PSTLSNCTYLRTLSLAYN 188
           ++  N            +   +SL  N + +  + P+T    T    +     
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 29/111 (26%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 131 LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDF 190
           L+ V      L   +P  I    P    L L  N              +L  L L  N  
Sbjct: 35  LRVVQCSDLGLK-AVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKI 90

Query: 191 SGAVPREIGNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQV 240
           S    +    L KL+ LYI  N L  EIP     +L EL    +  N ++ 
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSSLVEL---RIHDNRIRK 137

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.2 bits (162), Expect = 4e-13
 Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 11/142 (7%)

Query: 103 NLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161
            L+ L+ L L+ N+L  ++P+ IF     L+ + +  NKL   +P  +   L  L  L L
Sbjct: 59  RLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRL 116

Query: 162 SLNMFH---GGIPSTLSNCTYLRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGANRLQGE 217
             N        +  +L+    L  LSL YN+   ++P+ +   LT LK L +  N+L+  
Sbjct: 117 DRNQLKSLPPRVFDSLTK---LTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRV 172

Query: 218 IPREFGNLTELEQFSLPTNNLQ 239
               F  LTEL+   L  N L+
Sbjct: 173 PEGAFDKLTELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.8 bits (143), Expect = 2e-10
 Identities = 42/157 (26%), Positives = 75/157 (47%), Gaps = 9/157 (5%)

Query: 84  TVLNISSLNLRGTIPSQL-GNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKL 141
            +L ++   L+ T+P+ +   L +L++L ++ N+L  ++P  +F     L  + L +N+L
Sbjct: 64  RLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQL 121

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTL-SNCTYLRTLSLAYNDFSGAVPREI-G 199
              +P  +  +L  L +LSL  N     +P  +    T L+ L L  N     VP     
Sbjct: 122 K-SLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFD 178

Query: 200 NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
            LT+LK L +  N+L+      F +L +L+   L  N
Sbjct: 179 KLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.8 bits (163), Expect = 7e-13
 Identities = 39/160 (24%), Positives = 72/160 (45%), Gaps = 9/160 (5%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKN---VSLGKNK 140
             L+ S+  L  T+    G+L+ L++L L  N+L   +         +K+   + + +N 
Sbjct: 327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNS 385

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGN 200
           +S       CS    L  L++S N+    I   L     ++ L L  N    ++P+++  
Sbjct: 386 VSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVK 442

Query: 201 LTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
           L  L+ L + +N+L+  +P   F  LT L++  L TN   
Sbjct: 443 LEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 31/157 (19%), Positives = 64/157 (40%), Gaps = 10/157 (6%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLS 142
            +++ S   L   +P  L        LN+S N +S  + ++     + L+ + +  N++ 
Sbjct: 3   FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQ 58

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDF-SGAVPREIGNL 201
             +  ++      LE+L LS N           N   L+ L L++N F +  + +E GN+
Sbjct: 59  -YLDISVFKFNQELEYLDLSHNKLVKISCHPTVN---LKHLDLSFNAFDALPICKEFGNM 114

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           ++LK L +    L+        +L   +   +     
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 57.6 bits (139), Expect = 7e-10
 Identities = 30/142 (21%), Positives = 57/142 (40%), Gaps = 10/142 (7%)

Query: 109 SLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHG 168
            ++ S N L   +P  +        +++ +N +S ++ T+   +L  L  L +S N    
Sbjct: 4   LVDRSKNGLI-HVPKDLSQ--KTTILNISQNYIS-ELWTSDILSLSKLRILIISHNRIQY 59

Query: 169 GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPR--EFGNLT 226
              S       L  L L++N     +         LK L +  N     +P   EFGN++
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMS 115

Query: 227 ELEQFSLPTNNLQVMILNFLQF 248
           +L+   L T +L+   +  +  
Sbjct: 116 QLKFLGLSTTHLEKSSVLPIAH 137

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 5e-08
 Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 9/172 (5%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKL 141
            T+LNIS   +     S + +LS L+ L +S NR+   +  ++F     L+ + L  NKL
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKL 81

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHG-GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGN 200
              I    C     L+ L LS N F    I     N + L+ L L+      +    I +
Sbjct: 82  VK-IS---CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAH 137

Query: 201 LTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSS 252
           L   KVL +       +   +   L +    SL          +F+   S  
Sbjct: 138 LNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIVFPTNKEFHFILDVSVK 187

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 52.2 bits (125), Expect = 6e-08
 Identities = 28/227 (12%), Positives = 59/227 (25%), Gaps = 22/227 (9%)

Query: 13  FLLLHCLIIISLFIAATTATTSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWT 72
              L      SL I   T      I D          +++          +    +    
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216

Query: 73  GVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLK 132
                + +  +  +  +  +       QL   +++   ++S  +L G +    F      
Sbjct: 217 QTNPKLSNLTLNNIETTWNSF--IRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGT- 273

Query: 133 NVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG 192
                              +L  L    +  ++F           + +   +   +    
Sbjct: 274 -------------------SLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRM 314

Query: 193 AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
                   ++    L    N L   +    G+LTELE   L  N L+
Sbjct: 315 VHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK 361

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.3 bits (162), Expect = 9e-13
 Identities = 27/139 (19%), Positives = 51/139 (36%), Gaps = 5/139 (3%)

Query: 105 SSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL 163
           + +  ++LS N ++  +  T F+    L+ + + +      I  N    L  L  L L  
Sbjct: 30  AHVNYVDLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 164 NMFHGGIPSTLSNCTYLRTLSLAYNDF-SGAVPREI-GNLTKLKVLYIGANRLQGEIPRE 221
           N F        +    L  L+L   +     +       LT L++L +  N ++   P  
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 222 -FGNLTELEQFSLPTNNLQ 239
            F N+       L  N ++
Sbjct: 149 FFLNMRRFHVLDLTFNKVK 167

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.0 bits (156), Expect = 5e-12
 Identities = 35/177 (19%), Positives = 63/177 (35%), Gaps = 7/177 (3%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKL 141
           V  +++S  ++     +    L  LQ L +        I +  F   + L  + L  N+ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGI--PSTLSNCTYLRTLSLAYNDFSGAVPREI- 198
             Q+ T   + L  LE L+L+     G +   +     T L  L L  N+     P    
Sbjct: 92  L-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLT--ELEQFSLPTNNLQVMILNFLQFYSSSA 253
            N+ +  VL +  N+++     +  N          L +  LQ M   +L +     
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 58.2 bits (141), Expect = 5e-10
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 18/175 (10%)

Query: 81  HRVTVLNISSLNLRGTIPS---QLGNLSSLQSLNLSCNRLSG---------SIPSTIF-- 126
             +T L++S    + ++          + +QSL LS +   G            +  F  
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271

Query: 127 -TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSL 185
                +K   L K+K+   +  ++ S+   LE L+L+ N  +    +     T+L  L+L
Sbjct: 272 LEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNL 330

Query: 186 AYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
           + N       R   NL KL+VL +  N ++  +  + F  L  L++ +L TN L+
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK 384

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 51.3 bits (123), Expect = 1e-07
 Identities = 37/179 (20%), Positives = 60/179 (33%), Gaps = 22/179 (12%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK 138
               +T+ +++   L           +S+ +L+LS N    S+    F       +    
Sbjct: 186 RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQ--- 242

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTL------------------SNCTYL 180
             L      N+ S+     F       F G   S +                  S+ T L
Sbjct: 243 -SLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDL 301

Query: 181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
             L+LA N+ +         LT L  L +  N L     R F NL +LE   L  N+++
Sbjct: 302 EQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR 360

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 2e-12
 Identities = 39/158 (24%), Positives = 59/158 (37%), Gaps = 8/158 (5%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLS 142
           T+L++S   L     + L   + L  LNL    L+  +   +      L  + L  N+L 
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ--VDGTLPVLGTLDLSHNQLQ 90

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
             +P      LP L  L +S N         L     L+ L L  N+     P  +    
Sbjct: 91  -SLPLLG-QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 203 KLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
           KL+ L +  N L  E+P      L  L+   L  N+L 
Sbjct: 149 KLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 6e-09
 Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 4/118 (3%)

Query: 96  TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKLSGQIPTNICSNLP 154
           ++P     L +L  L++S NRL+ S+P      +  L+ + L  N+L   +P  + +  P
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-TLPPGLLTPTP 148

Query: 155 FLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGAN 212
            LE LSL+ N         L+    L TL L  N     +P+       L   ++  N
Sbjct: 149 KLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.2 bits (156), Expect = 4e-12
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 19/147 (12%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
           +  +   +       +   L  ++    L L+   LS S+P  +     +  + + +N L
Sbjct: 38  KQALPGENRNEAVSLLKECL--INQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNAL 92

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
              +P    S    LE+L    N     +P   ++   L+ L +  N  +  +P     L
Sbjct: 93  I-SLPELPAS----LEYLDACDNRLS-TLPELPAS---LKHLDVDNNQLT-MLPELPALL 142

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTEL 228
                +    N+L   +P    +L  L
Sbjct: 143 EY---INADNNQLT-MLPELPTSLEVL 165

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 62.7 bits (152), Expect = 1e-11
 Identities = 29/170 (17%), Positives = 58/170 (34%), Gaps = 19/170 (11%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             L++ +  L   +P     L   + +N   N+L+  +P    +   L+ +S+  N+L+ 
Sbjct: 123 KHLDVDNNQLT-MLPELPALL---EYINADNNQLT-MLPELPTS---LEVLSVRNNQLT- 173

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRT----LSLAYNDFSGAVPREIG 199
            +P    S    LE L +S N+    +P+      +            N  +  +P  I 
Sbjct: 174 FLPELPES----LEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENIL 227

Query: 200 NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFY 249
           +L     + +  N L   I       T    +  P     +        +
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLH 277

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 63.2 bits (154), Expect = 7e-12
 Identities = 35/170 (20%), Positives = 69/170 (40%), Gaps = 5/170 (2%)

Query: 81  HRVTVLNISSLNLRGTIPSQL-GNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGK 138
             +  L ++S N   TI      +L SL+ L+LS N LS ++ S+ F  + +L  ++L  
Sbjct: 76  VNLQALVLTS-NGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLG 133

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPS-TLSNCTYLRTLSLAYNDFSGAVPRE 197
           N       T++ S+L  L+ L +        I     +  T+L  L +  +D     P+ 
Sbjct: 134 NPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKS 193

Query: 198 IGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
           + ++  +  L +   +    +       + +E   L   +L     + L 
Sbjct: 194 LKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 40/160 (25%), Positives = 72/160 (45%), Gaps = 5/160 (3%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKL 141
           V  L++S+  +     S L    +LQ+L L+ N ++ +I    F+ + +L+++ L  N L
Sbjct: 54  VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYL 112

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIP-STLSNCTYLRTLSLAYNDFSGAVPREI-G 199
           S  + ++    L  L FL+L  N +      S  S+ T L+ L +   D    + R+   
Sbjct: 113 S-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA 171

Query: 200 NLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
            LT L+ L I A+ LQ   P+   ++  +    L      
Sbjct: 172 GLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 26/149 (17%), Positives = 50/149 (33%), Gaps = 14/149 (9%)

Query: 101 LGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL 159
              L+ L+ L +  + L  S        I  + ++ L   +    +          +E L
Sbjct: 170 FAGLTFLEELEIDASDLQ-SYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECL 227

Query: 160 SLS--------LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGA 211
            L          +    G  ++L      R + +        V + +  ++ L  L    
Sbjct: 228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSR 286

Query: 212 NRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
           N+L+  +P   F  LT L++  L TN   
Sbjct: 287 NQLKS-VPDGIFDRLTSLQKIWLHTNPWD 314

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.1 bits (154), Expect = 9e-12
 Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 18/145 (12%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             L  S  +L   +P    +L SL   N +   LS   P        L+ + +  N+L  
Sbjct: 94  ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------LEYLGVSNNQLE- 144

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
           ++P     N  FL+ + +  N     +P    +   L  ++   N        E+ NL  
Sbjct: 145 KLPEL--QNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLE--ELPELQNLPF 196

Query: 204 LKVLYIGANRLQGEIPREFGNLTEL 228
           L  +Y   N L+ ++P    +L  +
Sbjct: 197 LTAIYADNNSLK-KLPDLPLSLESI 220

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 39/158 (24%), Positives = 69/158 (43%), Gaps = 21/158 (13%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
           +   L +++L L  ++P    +L   +SL  SCN L+  +P    ++ +L   +     L
Sbjct: 72  QAHELELNNLGLS-SLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 126

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
           S   P         LE+L +S N     +P  L N ++L+ + +  N     +P    +L
Sbjct: 127 SDLPPL--------LEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSL 175

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
             +     G N+L+ E+P E  NL  L       N+L+
Sbjct: 176 EFI---AAGNNQLE-ELP-ELQNLPFLTAIYADNNSLK 208

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 58.9 bits (143), Expect = 3e-10
 Identities = 23/156 (14%), Positives = 51/156 (32%), Gaps = 25/156 (16%)

Query: 96  TIPSQLGNLSSLQSLNLSCNRLSGSIPS--------TIFTIYTLKNVSLGKNKLSGQIPT 147
            +P +  N+ S      + +    + P          +  +    +    + +L+    +
Sbjct: 25  EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLS 84

Query: 148 NICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPR----------- 196
           ++    P LE L  S N     +P    +   L   +      S   P            
Sbjct: 85  SLPELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQL 143

Query: 197 ----EIGNLTKLKVLYIGANRLQGEIPREFGNLTEL 228
               E+ N + LK++ +  N L+ ++P    +L  +
Sbjct: 144 EKLPELQNSSFLKIIDVDNNSLK-KLPDLPPSLEFI 178

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 30/158 (18%), Positives = 56/158 (35%), Gaps = 26/158 (16%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
             +   +  L      +L NL  L ++    N L  ++P       +L+ +++  N L+ 
Sbjct: 218 ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK-TLPDLPP---SLEALNVRDNYLT- 270

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPS----TLSNC---------TYLRTLSLAYNDF 190
            +P     +L FL+      +      P+      S+            L  L+++ N  
Sbjct: 271 DLPELP-QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKL 329

Query: 191 SGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL 228
              +P     L +   L    N L  E+P    NL +L
Sbjct: 330 I-ELPALPPRLER---LIASFNHLA-EVPELPQNLKQL 362

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 3e-08
 Identities = 19/136 (13%), Positives = 36/136 (26%), Gaps = 18/136 (13%)

Query: 103 NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS 162
           + + LQ      + L+  +P     + +        ++     P         +    L 
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGN-GEQREMAVSRLR 66

Query: 163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREF 222
             +                 L L     S ++P    +L     L    N L  E+P   
Sbjct: 67  DCL-----------DRQAHELELNNLGLS-SLPELPPHLES---LVASCNSLT-ELPELP 110

Query: 223 GNLTELEQFSLPTNNL 238
            +L  L   +     L
Sbjct: 111 QSLKSLLVDNNNLKAL 126

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 36/162 (22%), Positives = 58/162 (35%), Gaps = 20/162 (12%)

Query: 87  NISSLNLRG-TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQI 145
           N+  LN     I S      SL+ LN+S N+L   +P+       L+ +    N L+ ++
Sbjct: 298 NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EV 352

Query: 146 PTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLK 205
           P    +    L+ L +  N      P    +   LR      N     VP    NL   K
Sbjct: 353 PELPQN----LKQLHVEYNPLRE-FPDIPESVEDLR-----MNSHLAEVPELPQNL---K 399

Query: 206 VLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
            L++  N L+ E P    ++ +L   S    +          
Sbjct: 400 QLHVETNPLR-EFPDIPESVEDLRMNSERVVDPYEFAHETTD 440

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 27/158 (17%), Positives = 49/158 (31%), Gaps = 26/158 (16%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           T +   + +L+  +P    +L   +S+    N L       +  +  L  +    N L  
Sbjct: 198 TAIYADNNSLK-KLPDLPLSL---ESIVAGNNIL--EELPELQNLPFLTTIYADNNLLK- 250

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP-------- 195
            +P     +L  L      L      +P    + T+L      ++  S   P        
Sbjct: 251 TLPDLPP-SLEALNVRDNYLT----DLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 305

Query: 196 -----REIGNLTKLKVLYIGANRLQGEIPREFGNLTEL 228
                        L+ L +  N+L  E+P     L  L
Sbjct: 306 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL 342

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 1e-11
 Identities = 25/134 (18%), Positives = 51/134 (38%), Gaps = 7/134 (5%)

Query: 87  NISSLNLRGTIPSQLGNLSS---LQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           NI  L +     +    +S    L+ L +    ++      +  + +L  + +  +    
Sbjct: 67  NIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDD 126

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
            I T I + LP +  + LS N     I   L     L++L++ ++         I +  K
Sbjct: 127 SILTKI-NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPK 182

Query: 204 LKVLYIGANRLQGE 217
           L  LY  +  + G+
Sbjct: 183 LNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 20/149 (13%), Positives = 42/149 (28%), Gaps = 29/149 (19%)

Query: 90  SLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNI 149
            L    T       ++SL  + L+              +  L  +               
Sbjct: 29  LLGQSSTANITEAQMNSLTYITLANIN-----------VTDLTGIE-------------- 63

Query: 150 CSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYI 209
                 ++ L+++         + +S  + L  L +   D +      +  LT L +L I
Sbjct: 64  --YAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119

Query: 210 GANRLQGEIPREFGNLTELEQFSLPTNNL 238
             +     I  +   L ++    L  N  
Sbjct: 120 SHSAHDDSILTKINTLPKVNSIDLSYNGA 148

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 46.9 bits (112), Expect = 1e-06
 Identities = 17/119 (14%), Positives = 40/119 (33%), Gaps = 12/119 (10%)

Query: 131 LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPST--LSNCTYLRTLSLAYN 188
             N  LG++  +        + +  L +++L+       +     +     ++ L++   
Sbjct: 25  YLNGLLGQSSTANITE----AQMNSLTYITLANI----NVTDLTGIEYAHNIKDLTINNI 76

Query: 189 DFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ 247
             +   P  I  L+ L+ L I    +  +       LT L    +  +     IL  + 
Sbjct: 77  HATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.6 bits (152), Expect = 2e-11
 Identities = 37/159 (23%), Positives = 73/159 (45%), Gaps = 5/159 (3%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL- 141
           + +  +S  +          + SS   LN + N  + S+     T+  L+ + L +N L 
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTL-SNCTYLRTLSLAYNDFSGAVPREIGN 200
           +      +  N+  LE L +SLN  +        +    +  L+L+ N  +G+V R +  
Sbjct: 391 NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL-- 448

Query: 201 LTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
             K+KVL +  NR+   IP++  +L  L++ ++ +N L+
Sbjct: 449 PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 13/169 (7%)

Query: 73  GVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-L 131
           G      +   ++++ S+ NL   +P         ++L+LS N +S  +     +  + L
Sbjct: 23  GSMTPFSNELESMVDYSNRNLT-HVPK--DLPPRTKALSLSQNSIS-ELRMPDISFLSEL 78

Query: 132 KNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDF- 190
           + + L  N++   +  ++      LE+L +S N         +++   LR L L++NDF 
Sbjct: 79  RVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMAS---LRHLDLSFNDFD 134

Query: 191 SGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
              V +E GNLTKL  L + A + +     +   +  L    +  + + 
Sbjct: 135 VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVS 180

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 51.0 bits (122), Expect = 1e-07
 Identities = 29/156 (18%), Positives = 56/156 (35%), Gaps = 12/156 (7%)

Query: 100 QLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQ----IPTNICSNLPF 155
           Q      ++ LN+    ++  I    FT       SL    +  Q        + S    
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330

Query: 156 LEFLSLSLN---MFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGAN 212
           +    LS++     H   P + S+      L+   N F+ +V +    L +L+ L +  N
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSS---FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRN 387

Query: 213 RLQ--GEIPREFGNLTELEQFSLPTNNLQVMILNFL 246
            L+   ++     N++ LE   +  N+L     +  
Sbjct: 388 GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRT 423

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.2 bits (151), Expect = 2e-11
 Identities = 41/158 (25%), Positives = 68/158 (43%), Gaps = 11/158 (6%)

Query: 83  VTVLNISSLNLRGTIPSQ--LGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKN 139
             +L++S  NL   + ++     L++L SL LS N L+  I S  F  +  L+ + L  N
Sbjct: 41  TALLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSN 98

Query: 140 KLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI- 198
            L   +   + S+L  LE L L  N       +   +   L+ L L+ N  S   P E+ 
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELI 156

Query: 199 ---GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSL 233
                L KL +L + +N+L+     +   L    +  L
Sbjct: 157 KDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 43/157 (27%), Positives = 62/157 (39%), Gaps = 12/157 (7%)

Query: 89  SSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLSGQIPT 147
           S   L   +P  L   S    L+LS N LS        T  T L ++ L  N L+  I +
Sbjct: 26  SKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISS 81

Query: 148 NICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI-GNLTKLKV 206
                +P L +L LS N  H       S+   L  L L  N     V R    ++ +L+ 
Sbjct: 82  EAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQK 140

Query: 207 LYIGANRLQGEIPRE----FGNLTELEQFSLPTNNLQ 239
           LY+  N++    P E       L +L    L +N L+
Sbjct: 141 LYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 58.7 bits (142), Expect = 2e-10
 Identities = 29/136 (21%), Positives = 54/136 (39%), Gaps = 7/136 (5%)

Query: 106 SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNM 165
           +   L+ S  +L  ++P ++ +      + L  N LS        + L  L  L LS N 
Sbjct: 19  ASNILSCSKQQLP-NVPQSLPS--YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNH 75

Query: 166 FHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGANRLQGEIPRE-FG 223
            +            LR L L+ N     +   +  +L  L+VL +  N +   + R  F 
Sbjct: 76  LNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFE 133

Query: 224 NLTELEQFSLPTNNLQ 239
           ++ +L++  L  N + 
Sbjct: 134 DMAQLQKLYLSQNQIS 149

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 39.1 bits (91), Expect = 9e-04
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT----LKNVSLGKN 139
            VL + + ++     +   +++ LQ L LS N++S   P  +         L  + L  N
Sbjct: 115 EVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSN 173

Query: 140 KLSGQIPTNICSNLPFLEFLSLSLN 164
           KL  ++P      LP      L L+
Sbjct: 174 KLK-KLPLTDLQKLPAWVKNGLYLH 197

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 9e-11
 Identities = 39/140 (27%), Positives = 57/140 (40%), Gaps = 9/140 (6%)

Query: 103 NLSSLQSLNLSCNRLSGSIPSTIFTI-YTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161
            LSSLQ L      L+ S+ +       TLK +++  N +         SNL  LE L L
Sbjct: 98  GLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 156

Query: 162 SLNMFH---GGIPSTLSNCTYLR-TLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGE 217
           S N            L     L  +L L+ N  +  +        +LK L +  N+L+  
Sbjct: 157 SSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLK-S 214

Query: 218 IPRE-FGNLTELEQFSLPTN 236
           +P   F  LT L++  L TN
Sbjct: 215 VPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 33/162 (20%), Positives = 61/162 (37%), Gaps = 8/162 (4%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLS 142
             L++S   LR        +   LQ L+LS   +  +I    +   + L  + L  N + 
Sbjct: 31  KNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDF-SGAVPREIGNL 201
             +     S L  L+ L              + +   L+ L++A+N   S  +P    NL
Sbjct: 90  -SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQF----SLPTNNLQ 239
           T L+ L + +N++Q     +   L ++        L  N + 
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN 190

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 58.0 bits (140), Expect = 3e-10
 Identities = 34/174 (19%), Positives = 62/174 (35%), Gaps = 11/174 (6%)

Query: 63  NTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIP 122
            +      W           + VL+I+  +       Q+    +L +L+LS N   G   
Sbjct: 131 VSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG 190

Query: 123 STIFTIY----TLKNVSLGKNKLS--GQIPTNICSNLPFLEFLSLSLNMFHGGIP-STLS 175
                      TL+ ++L    +     + + + +    L+ L LS N         +  
Sbjct: 191 LISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD 250

Query: 176 NCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG-EIPREFGNLTEL 228
             + L +L+L++      VP+ +    KL VL +  NRL     P E   +  L
Sbjct: 251 WPSQLNSLNLSFTGLK-QVPKGL--PAKLSVLDLSYNRLDRNPSPDELPQVGNL 301

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 53.7 bits (129), Expect = 1e-08
 Identities = 27/140 (19%), Positives = 40/140 (28%), Gaps = 12/140 (8%)

Query: 84  TVLNISSLNLRGTIP----SQLGNLSSLQSLNLSCNR---LSGSIPSTIFTIYTLKNVSL 136
           + L++S     G              +LQ L L        SG   +       L+ + L
Sbjct: 176 STLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDL 235

Query: 137 GKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPR 196
             N L        C     L  L+LS            +    L  L L+YN      P 
Sbjct: 236 SHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLDR-NPS 291

Query: 197 EIGNLTKLKVLYIGANRLQG 216
               L ++  L +  N    
Sbjct: 292 -PDELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 32/183 (17%), Positives = 55/183 (30%), Gaps = 12/183 (6%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
           R+TV      +       ++  +S LQ L L    ++G+ P  +          L    +
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 142 SGQIPTNICSNLPF-----LEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG---- 192
           S        + L       L+ LS++           +     L TL L+ N   G    
Sbjct: 132 SWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGL 191

Query: 193 ---AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFY 249
                P +   L  L +   G     G          +L+   L  N+L+         +
Sbjct: 192 ISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW 251

Query: 250 SSS 252
            S 
Sbjct: 252 PSQ 254

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 48.4 bits (115), Expect = 7e-07
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 10/122 (8%)

Query: 76  CDVHSHRVTVLNISSLNLR---GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIY-TL 131
           C +    + VL + +  +    G   +       LQ L+LS N L  +  +        L
Sbjct: 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQL 255

Query: 132 KNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS 191
            +++L    L  Q+P  + + L     L LS N      PS       +  LSL  N F 
Sbjct: 256 NSLNLSFTGLK-QVPKGLPAKL---SVLDLSYNRLDR-NPSPDE-LPQVGNLSLKGNPFL 309

Query: 192 GA 193
            +
Sbjct: 310 DS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 27/169 (15%), Positives = 54/169 (31%), Gaps = 14/169 (8%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT---LKNVSLGKNK 140
            +L            + +    SL+ L +   R+   I      +     L+ ++L   +
Sbjct: 47  YLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLE 106

Query: 141 LSGQIPTNICSN-LPFLEFLSLSLNMFHGGIPSTLSNC-----TYLRTLSLAYNDFSGAV 194
           ++G  P  +     P L  L+L  N+      + L+         L+ LS+A        
Sbjct: 107 VTGTAPPPLLEATGPDLNILNLR-NVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165

Query: 195 PREIGNLTKLKVLYIGANRLQGEIPRE----FGNLTELEQFSLPTNNLQ 239
             ++     L  L +  N   GE              L+  +L    ++
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 25/121 (20%), Positives = 42/121 (34%), Gaps = 4/121 (3%)

Query: 120 SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTY 179
            IP  I        + L  N+ +    T I   LP L  ++ S N             + 
Sbjct: 25  KIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASG 82

Query: 180 LRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNL 238
           +  + L  N       +    L  LK L + +NR+   +  + F  L+ +   SL  N +
Sbjct: 83  VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQI 141

Query: 239 Q 239
            
Sbjct: 142 T 142

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.2 bits (123), Expect = 4e-08
 Identities = 33/158 (20%), Positives = 56/158 (35%), Gaps = 19/158 (12%)

Query: 69  CNWTGVACDVHSHRVTVL------NISSLNLRGTIPSQL------GNLSSLQSLNLSCNR 116
           C  T V C   + ++  +        + L L     + L        L  L+ +N S N+
Sbjct: 11  CEGTTVDC--SNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNK 68

Query: 117 LSGSIPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLS 175
           ++  I    F   + +  + L  N+L   +   +   L  L+ L L  N        +  
Sbjct: 69  IT-DIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTLMLRSNRITCVGNDSFI 126

Query: 176 NCTYLRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGAN 212
             + +R LSL  N  +  V       L  L  L + AN
Sbjct: 127 GLSSVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.0 bits (138), Expect = 4e-10
 Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 5/121 (4%)

Query: 120 SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTY 179
            IP+ +    T+  + L +N +   IP    S    L  + LS N      P        
Sbjct: 25  EIPTNLPE--TITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81

Query: 180 LRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNL 238
           L +L L  N  +         L  L++L + AN++   +  + F +L  L   SL  N L
Sbjct: 82  LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKL 140

Query: 239 Q 239
           Q
Sbjct: 141 Q 141

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.2 bits (136), Expect = 8e-10
 Identities = 30/134 (22%), Positives = 52/134 (38%), Gaps = 5/134 (3%)

Query: 105 SSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL 163
            ++  + L  N +   IP   F+ Y  L+ + L  N++S ++  +    L  L  L L  
Sbjct: 32  ETITEIRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYG 89

Query: 164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGANRLQGEIPREF 222
           N       S       L+ L L  N  +  +  +   +L  L +L +  N+LQ      F
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148

Query: 223 GNLTELEQFSLPTN 236
             L  ++   L  N
Sbjct: 149 SPLRAIQTMHLAQN 162

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 58.2 bits (140), Expect = 6e-10
 Identities = 38/141 (26%), Positives = 60/141 (42%), Gaps = 9/141 (6%)

Query: 99  SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158
           S L +L  L+SL+L  N +S  I + +  +  L+++ LG NK++    T + S L  L+ 
Sbjct: 103 SSLKDLKKLKSLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKIT--DITVL-SRLTKLDT 157

Query: 159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI 218
           LSL  N         L+  T L+ L L+ N  S    R +  L  L VL + +     + 
Sbjct: 158 LSLEDNQISD--IVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKP 213

Query: 219 PREFGNLTELEQFSLPTNNLQ 239
                NL           +L 
Sbjct: 214 INHQSNLVVPNTVKNTDGSLV 234

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 38/160 (23%), Positives = 70/160 (43%), Gaps = 21/160 (13%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
               N+   ++   +      L+S+  +  + + +  S+   I  +  +  + L  NKL 
Sbjct: 23  TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL- 77

Query: 143 GQIPTNIC--SNLPFLEFLSLSLNMFHGGIP--STLSNCTYLRTLSLAYNDFSGAVPREI 198
               T+I   +NL  L +L L  N     I   S+L +   L++LSL +N  S      +
Sbjct: 78  ----TDIKPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGISDING--L 127

Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
            +L +L+ LY+G N++          LT+L+  SL  N +
Sbjct: 128 VHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI 165

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.7 bits (136), Expect = 2e-09
 Identities = 48/165 (29%), Positives = 71/165 (43%), Gaps = 17/165 (10%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           T L ++   L       L NL +L  L L  N++   + S++  +  LK++SL  N +  
Sbjct: 68  TKLFLNGNKLTDI--KPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGI-- 121

Query: 144 QIPTNIC--SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
              ++I    +LP LE L L  N       + LS  T L TLSL  N  S  VP  +  L
Sbjct: 122 ---SDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGL 174

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFL 246
           TKL+ LY+  N +     R    L  L+   L +       +N  
Sbjct: 175 TKLQNLYLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQ 217

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 56.4 bits (136), Expect = 2e-09
 Identities = 37/186 (19%), Positives = 66/186 (35%), Gaps = 17/186 (9%)

Query: 67  PVCNWTGVACDVHSHRVT-----------VLNISSLNLRGTIPSQLGNLSSLQSLNLSCN 115
            +C+ +         +VT            L      LR            L+ + +S N
Sbjct: 5   RICHCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQN 64

Query: 116 RLSGSIPSTIFT-IYTLKNVSLGK-NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPST 173
            +   I + +F+ +  L  + + K N L   I      NLP L++L +S           
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVH 123

Query: 174 LSNCTYLRTLSLAYNDFSGAVPREI--GNLTKLKVLYIGANRLQGEIPREFGNLTELEQF 231
             +      L +  N     + R    G   +  +L++  N +Q EI     N T+L++ 
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDEL 182

Query: 232 SLPTNN 237
           +L  NN
Sbjct: 183 NLSDNN 188

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.4 bits (118), Expect = 3e-07
 Identities = 28/160 (17%), Positives = 46/160 (28%), Gaps = 6/160 (3%)

Query: 81  HRVTVLNISSLNLRGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGK 138
            ++  + I   N    I  +   NL +LQ L +S   +   +P            + +  
Sbjct: 79  PKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQD 137

Query: 139 NKLSGQIPTNICSNLPF-LEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPRE 197
           N     I  N    L F    L L+ N       S  +            N+        
Sbjct: 138 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDV 197

Query: 198 IGNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTN 236
               +   +L I   R+   +P     NL +L   S    
Sbjct: 198 FHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 4e-06
 Identities = 24/112 (21%), Positives = 47/112 (41%), Gaps = 6/112 (5%)

Query: 130 TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYND 189
           + +     ++K++ +IP+++  N   L F+   L +         S    L  + ++ ND
Sbjct: 10  SNRVFLCQESKVT-EIPSDLPRNAIELRFVLTKLRVIQ---KGAFSGFGDLEKIEISQND 65

Query: 190 FSGAVPREI-GNLTKLKVLYI-GANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
               +  ++  NL KL  + I  AN L    P  F NL  L+   +    ++
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 26/134 (19%), Positives = 43/134 (32%), Gaps = 7/134 (5%)

Query: 78  VHSHRVTVLNISSLNLRGTIPSQL--GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVS 135
           +HS +  +L+I       TI      G       L L+ N +   I ++ F    L  ++
Sbjct: 125 IHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELN 183

Query: 136 LGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP 195
           L  N    ++P ++         L +S    H      L N   LR  S           
Sbjct: 184 LSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLPT-- 241

Query: 196 REIGNLTKLKVLYI 209
             +  L  L    +
Sbjct: 242 --LEKLVALMEASL 253

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.4 bits (134), Expect = 2e-09
 Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 13/141 (9%)

Query: 104 LSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS 162
           L +++ L L  N+L   I        T L  + L  N+L   +P  +   L  L+ L L 
Sbjct: 62  LPNVRYLALGGNKLH-DIS--ALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLV 117

Query: 163 LNMFH---GGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP 219
            N       G+   L+N   L  L+LA+N            LT L  L +  N+LQ  +P
Sbjct: 118 ENQLQSLPDGVFDKLTN---LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLP 173

Query: 220 RE-FGNLTELEQFSLPTNNLQ 239
              F  LT+L+   L  N L+
Sbjct: 174 EGVFDKLTQLKDLRLYQNQLK 194

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 38/141 (26%), Positives = 62/141 (43%), Gaps = 13/141 (9%)

Query: 103 NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS 162
            L+S+  +  + + +  S+   I  +  ++ ++LG NKL   I       L  L +L L+
Sbjct: 39  ELNSIDQIIANNSDIK-SVQG-IQYLPNVRYLALGGNKLH-DIS--ALKELTNLTYLILT 93

Query: 163 LNMFH---GGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGN-LTKLKVLYIGANRLQGEI 218
            N       G+   L+N   L+ L L  N    ++P  + + LT L  L +  N+LQ   
Sbjct: 94  GNQLQSLPNGVFDKLTN---LKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQSLP 149

Query: 219 PREFGNLTELEQFSLPTNNLQ 239
              F  LT L +  L  N LQ
Sbjct: 150 KGVFDKLTNLTELDLSYNQLQ 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.7 bits (132), Expect = 3e-09
 Identities = 32/123 (26%), Positives = 54/123 (43%), Gaps = 10/123 (8%)

Query: 120 SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFH---GGIPSTLSN 176
           S+P+ I T    + + L  N+++ ++   +  +L  L+ L L  N       G+  +L+ 
Sbjct: 33  SVPAGIPT--NAQILYLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQ 89

Query: 177 CTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
              L  L L  N  +         L  LK L++  N+L  E+PR    LT L   +L  N
Sbjct: 90  ---LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQN 145

Query: 237 NLQ 239
            L+
Sbjct: 146 QLK 148

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 42/169 (24%), Positives = 68/169 (40%), Gaps = 19/169 (11%)

Query: 69  CNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTI 128
           C+ T V C   S R             ++P+  G  ++ Q L L  N+++  +   +F  
Sbjct: 19  CSGTTVDC--RSKRHA-----------SVPA--GIPTNAQILYLHDNQIT-KLEPGVFDS 62

Query: 129 YT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAY 187
              LK + LG N+L   +P  +  +L  L  L L  N       +      +L+ L +  
Sbjct: 63  LINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCC 121

Query: 188 NDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
           N  +  +PR I  LT L  L +  N+L+      F  L+ L    L  N
Sbjct: 122 NKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 54.3 bits (131), Expect = 5e-09
 Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 11/137 (8%)

Query: 108 QSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMF 166
           + L+L    L+ ++    F   T L  ++L  N+L   +   +  +L  L  L L+ N  
Sbjct: 38  EKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQL 95

Query: 167 H---GGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE-F 222
                G+   L+    L  L L  N            LTKLK L +  N+LQ  IP   F
Sbjct: 96  ASLPLGVFDHLTQ---LDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAF 151

Query: 223 GNLTELEQFSLPTNNLQ 239
             LT L+  SL TN LQ
Sbjct: 152 DKLTNLQTLSLSTNQLQ 168

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 7/156 (4%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLS 142
             L++ S  L     +    L+ L  LNL  N+L  ++ + +F   T L  + L  N+L+
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI-GNL 201
             +P  +  +L  L+ L L  N             T L+ L L  N    ++P      L
Sbjct: 97  -SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ-SIPAGAFDKL 154

Query: 202 TKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTN 236
           T L+ L +  N+LQ  +P   F  L +L+  +L  N
Sbjct: 155 TNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.2 bits (115), Expect = 6e-07
 Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 120 SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFH---GGIPSTLSN 176
           S+PS I      + + L    L+  +       L  L +L+L  N       G+   L+ 
Sbjct: 28  SVPSGIPA--DTEKLDLQSTGLA-TLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTE 84

Query: 177 CTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
              L TL LA N  +        +LT+L  LY+G N+L+      F  LT+L++  L TN
Sbjct: 85  ---LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTN 141

Query: 237 NLQ 239
            LQ
Sbjct: 142 QLQ 144

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 1e-08
 Identities = 34/139 (24%), Positives = 56/139 (40%), Gaps = 13/139 (9%)

Query: 53  DPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNL 112
           DP      +   S  +   +     +    V VL+++  +L  T+   L  L  +  L+L
Sbjct: 415 DPMRAAYLDDLRSKFLLENSV--LKMEYADVRVLHLAHKDL--TVLCHLEQLLLVTHLDL 470

Query: 113 SCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNI--CSNLPFLEFLSLSLNMFHG-G 169
           S NRL  ++P  +  +  L+ +    N L      N+   +NLP L+ L L  N      
Sbjct: 471 SHNRLR-ALPPALAALRCLEVLQASDNAL-----ENVDGVANLPRLQELLLCNNRLQQSA 524

Query: 170 IPSTLSNCTYLRTLSLAYN 188
               L +C  L  L+L  N
Sbjct: 525 AIQPLVSCPRLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 49.4 bits (117), Expect = 4e-07
 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 12/142 (8%)

Query: 98  PSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLE 157
              L  L   +      + L    P     +  L++  L +N +      ++        
Sbjct: 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV-------R 444

Query: 158 FLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGE 217
            L L+       +   L     +  L L++N    A+P  +  L  L+VL    N L+  
Sbjct: 445 VLHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-N 500

Query: 218 IPREFGNLTELEQFSLPTNNLQ 239
           +     NL  L++  L  N LQ
Sbjct: 501 VD-GVANLPRLQELLLCNNRLQ 521

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.9 bits (130), Expect = 1e-08
 Identities = 42/155 (27%), Positives = 67/155 (43%), Gaps = 14/155 (9%)

Query: 87  NISSLNLRG---TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           N+  L L+    T  + L NL+ +  L LS N L     S I  + ++K + L   +++ 
Sbjct: 64  NLIGLELKDNQITDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITD 121

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
             P    + L  L+ L L LN       S L+  T L+ LS+     S   P  + NL+K
Sbjct: 122 VTP---LAGLSNLQVLYLDLNQITN--ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSK 174

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           L  L    N++  +I     +L  L +  L  N +
Sbjct: 175 LTTLKADDNKIS-DIS-PLASLPNLIEVHLKNNQI 207

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 53.5 bits (129), Expect = 1e-08
 Identities = 35/157 (22%), Positives = 63/157 (40%), Gaps = 18/157 (11%)

Query: 87  NISSLNLRG---TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
            I++L+  G   T    +  L++L  L L  N+++   P    T   +  + L  N L  
Sbjct: 42  GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLT--KITELELSGNPL-- 97

Query: 144 QIPTNIC--SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
               N+   + L  ++ L L+         + L+  + L+ L L  N  +   P  +  L
Sbjct: 98  ---KNVSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQITNISP--LAGL 150

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           T L+ L IG  ++    P    NL++L       N +
Sbjct: 151 TNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 31/156 (19%), Positives = 62/156 (39%), Gaps = 13/156 (8%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
              +     N+  T+     +L  + +L+     ++ +I   +  +  L  + L  N+++
Sbjct: 21  AIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDNQIT 76

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
              P     NL  +  L LS N       S ++    ++TL L     +   P  +  L+
Sbjct: 77  DLAP---LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQITDVTP--LAGLS 129

Query: 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
            L+VLY+  N++   I      LT L+  S+    +
Sbjct: 130 NLQVLYLDLNQIT-NIS-PLAGLTNLQYLSIGNAQV 163

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 35/155 (22%), Positives = 63/155 (40%), Gaps = 12/155 (7%)

Query: 87  NISSLNLRG---TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           +I +L+L     T  + L  LS+LQ L L  N+++ +I   +  +  L+ +S+G  ++S 
Sbjct: 108 SIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSD 165

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
             P    +NL  L  L    N       S L++   L  + L  N  S   P  + N + 
Sbjct: 166 LTP---LANLSKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSN 218

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
           L ++ +    +  +      NL        P+   
Sbjct: 219 LFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 22/138 (15%), Positives = 45/138 (32%), Gaps = 11/138 (7%)

Query: 101 LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160
              L++   +    + ++ ++         +  +S     ++          L  L  L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQADLD--GITTLSAFGTGVTTIEG---VQYLNNLIGLE 69

Query: 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPR 220
           L  N       + L N T +  L L+ N         I  L  +K L + + ++    P 
Sbjct: 70  LKDNQITD--LAPLKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP- 124

Query: 221 EFGNLTELEQFSLPTNNL 238
               L+ L+   L  N +
Sbjct: 125 -LAGLSNLQVLYLDLNQI 141

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 9/109 (8%)

Query: 131 LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDF 190
              ++ GK+ ++  +     ++L  +  LS             +     L  L L  N  
Sbjct: 21  AIKIAAGKSNVTDTVT---QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDNQI 75

Query: 191 SGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           +   P  + NLTK+  L +  N L+  +      L  ++   L +  + 
Sbjct: 76  TDLAP--LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQIT 120

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 50.8 bits (122), Expect = 1e-07
 Identities = 22/139 (15%), Positives = 48/139 (34%), Gaps = 15/139 (10%)

Query: 101 LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160
           +  L+ L   + S N L+  +  +  +   L  +   +  L  +I     + L + +   
Sbjct: 229 VTPLTQLTYFDCSVNPLT-ELDVSTLS--KLTTLHCIQTDLL-EIDLTHNTQLIYFQAEG 284

Query: 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPR 220
                        +++ T L  L       +     ++    KL  LY+    L  E+  
Sbjct: 285 CRKI-----KELDVTHNTQLYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-ELD- 334

Query: 221 EFGNLTELEQFSLPTNNLQ 239
              + T+L+  S    ++Q
Sbjct: 335 -VSHNTKLKSLSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 30/183 (16%)

Query: 82  RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
            +T L+  + ++  T  + +  L+ L  L  + N ++ ++  +  T   L  ++   NKL
Sbjct: 43  TLTSLDCHNSSI--TDMTGIEKLTGLTKLICTSNNIT-TLDLSQNT--NLTYLACDSNKL 97

Query: 142 SG-----------------QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLS 184
           +                  ++     S  P L +L+ + N         +S+ T L  L 
Sbjct: 98  TNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT---EIDVSHNTQLTELD 154

Query: 185 LAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILN 244
              N     +   +   T+L  L    N++      +      L + +  TNN+  + LN
Sbjct: 155 CHLNKKITKLD--VTPQTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITKLDLN 209

Query: 245 FLQ 247
              
Sbjct: 210 QNI 212

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 25/153 (16%), Positives = 51/153 (33%), Gaps = 15/153 (9%)

Query: 86  LNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQI 145
              ++  ++ T       L++L SL+   + ++        T   L  +    N ++  +
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLT--GLTKLICTSNNIT-TL 79

Query: 146 PTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLK 205
                S    L +L+   N     +   ++  T L  L+   N  +     ++     L 
Sbjct: 80  DL---SQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTKL---DVSQNPLLT 130

Query: 206 VLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
            L    N L  EI     + T+L +     N  
Sbjct: 131 YLNCARNTLT-EID--VSHNTQLTELDCHLNKK 160

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 4e-05
 Identities = 25/139 (17%), Positives = 48/139 (34%), Gaps = 15/139 (10%)

Query: 101 LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160
           + + + L  L+   N+    +  T  T   L  +    NK++ ++     S    L  L+
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQT--QLTTLDCSFNKIT-ELDV---SQNKLLNRLN 197

Query: 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPR 220
              N     +   L+    L  L  + N  +     ++  LT+L       N L  E+  
Sbjct: 198 CDTNNITK-LD--LNQNIQLTFLDCSSNKLTEI---DVTPLTQLTYFDCSVNPLT-ELD- 249

Query: 221 EFGNLTELEQFSLPTNNLQ 239
               L++L        +L 
Sbjct: 250 -VSTLSKLTTLHCIQTDLL 267

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 33/123 (26%), Positives = 50/123 (40%), Gaps = 9/123 (7%)

Query: 120 SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFH---GGIPSTLSN 176
           S+P+ I        + L  N L   +P  +   L  L  L L  N       G+ + L++
Sbjct: 21  SVPTGIPA--QTTYLDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTS 77

Query: 177 CTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN 236
              L  L+L+ N            LT+LK L +  N+LQ      F  LT+L+   L  N
Sbjct: 78  ---LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134

Query: 237 NLQ 239
            L+
Sbjct: 135 QLK 137

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 46/180 (25%), Positives = 73/180 (40%), Gaps = 40/180 (22%)

Query: 69  CNWTGVACDVHSH---------RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG 119
           C+ T V C              + T L++ + +L+         L+SL  L L  N+L  
Sbjct: 7   CSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ- 65

Query: 120 SIPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT 178
           S+P+ +F   T L  ++L  N+L          +LP   F  L                T
Sbjct: 66  SLPNGVFNKLTSLTYLNLSTNQL---------QSLPNGVFDKL----------------T 100

Query: 179 YLRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTN 236
            L+ L+L  N    ++P  +   LT+LK L +  N+L+  +P   F  LT L+   L  N
Sbjct: 101 QLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSLQYIWLHDN 158

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 49.2 bits (118), Expect = 2e-07
 Identities = 30/165 (18%), Positives = 56/165 (33%), Gaps = 7/165 (4%)

Query: 81  HRVTVLNISSLNLRGTIPSQL-GNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGK 138
             ++ + +S       + S    NLS +  + +   R    I       +  LK + +  
Sbjct: 55  PNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFN 114

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTL--SNCTYLRTLSLAYNDFSGAVPR 196
             L          +      L ++ N +   IP       C    TL L  N F+ +V  
Sbjct: 115 TGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQG 173

Query: 197 EIGNLTKLKVLYIGANRLQGEIPRE-FGNLTE-LEQFSLPTNNLQ 239
              N TKL  +Y+  N+    I ++ FG +        +   ++ 
Sbjct: 174 YAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 48.1 bits (115), Expect = 6e-07
 Identities = 30/161 (18%), Positives = 58/161 (36%), Gaps = 9/161 (5%)

Query: 83  VTVLNISSLNLRGTIPSQ-LGNLSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLGKNK 140
              L +   +LR TIPS    NL ++  + +S +     + S  F  +  + ++ +   +
Sbjct: 33  TQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91

Query: 141 LSGQIPTNICSNLPFLEFLSLSLNMFHGGIP--STLSNCTYLRTLSLAYNDFSGAVPREI 198
               I  +    LP L+FL +         P  + + +      L +  N +  ++P   
Sbjct: 92  NLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 199 -GNLTK-LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237
              L      L +  N     +     N T+L+   L  N 
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNK 190

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 7/115 (6%)

Query: 129 YTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYN 188
           +  ++  +    +  +IP    S  P  + L L             SN   +  + ++ +
Sbjct: 11  HQEEDFRVTCKDIQ-RIP----SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSID 65

Query: 189 DFSGAVPREI-GNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQVM 241
                +      NL+K+  + I   R    I  +    L  L+   +    L++ 
Sbjct: 66  VTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMF 120

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 37/138 (26%), Positives = 58/138 (42%), Gaps = 9/138 (6%)

Query: 101 LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS 160
           L +L  L+SL+L  N +S  I   +  +  L+++ LG NK++    T + S L  L+ LS
Sbjct: 108 LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKIT--DITVL-SRLTKLDTLS 162

Query: 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPR 220
           L  N         L+  T L+ L L+ N  S    R +  L  L VL + +     +   
Sbjct: 163 LEDNQISD--IVPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKPIN 218

Query: 221 EFGNLTELEQFSLPTNNL 238
              NL           +L
Sbjct: 219 HQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.5 bits (116), Expect = 5e-07
 Identities = 39/157 (24%), Positives = 68/157 (43%), Gaps = 18/157 (11%)

Query: 87  NISSLNLRG---TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
                NL+    T       L+S+  +  + + +  S+   I  +  +  + L  NKL  
Sbjct: 25  ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGNKL-- 80

Query: 144 QIPTNIC--SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
              T+I   +NL  L +L L  N       S+L +   L++LSL +N  S      + +L
Sbjct: 81  ---TDIKPLANLKNLGWLFLDENKVK--DLSSLKDLKKLKSLSLEHNGISDING--LVHL 133

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL 238
            +L+ LY+G N++          LT+L+  SL  N +
Sbjct: 134 PQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI 168

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 48.1 bits (115), Expect = 8e-07
 Identities = 48/165 (29%), Positives = 73/165 (44%), Gaps = 17/165 (10%)

Query: 84  TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           T L ++   L       L NL +L  L L  N++   + S++  +  LK++SL  N +  
Sbjct: 71  TKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGI-- 124

Query: 144 QIPTNIC--SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
              ++I    +LP LE L L  N       + LS  T L TLSL  N  S  VP  +  L
Sbjct: 125 ---SDINGLVHLPQLESLYLGNNKIT--DITVLSRLTKLDTLSLEDNQISDIVP--LAGL 177

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFL 246
           TKL+ LY+  N +  ++ R    L  L+   L +       +N  
Sbjct: 178 TKLQNLYLSKNHIS-DL-RALAGLKNLDVLELFSQECLNKPINHQ 220

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 47.7 bits (114), Expect = 9e-07
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 21/143 (14%)

Query: 101 LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKN---VSLGKNKLSGQIPTNIC--SNLPF 155
           +  L ++  L L+ N+L     + I  +  LKN   + L +NK+      ++    +L  
Sbjct: 64  IQYLPNVTKLFLNGNKL-----TDIKPLANLKNLGWLFLDENKV-----KDLSSLKDLKK 113

Query: 156 LEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQ 215
           L+ LSL  N       + L +   L +L L  N  +      +  LTKL  L +  N++ 
Sbjct: 114 LKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKITDITV--LSRLTKLDTLSLEDNQIS 169

Query: 216 GEIPREFGNLTELEQFSLPTNNL 238
            +I      LT+L+   L  N++
Sbjct: 170 -DIV-PLAGLTKLQNLYLSKNHI 190

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.5 bits (111), Expect = 1e-06
 Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 4/95 (4%)

Query: 145 IPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKL 204
           +P  I  ++     L L  N F   +P  LSN  +L  + L+ N  S    +   N+T+L
Sbjct: 25  LPKGIPRDV---TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQL 80

Query: 205 KVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
             L +  NRL+   PR F  L  L   SL  N++ 
Sbjct: 81  LTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 43/156 (27%), Positives = 62/156 (39%), Gaps = 41/156 (26%)

Query: 69  CNWTGVACDVHSHRVTVL------NISSLNLRG----TIPSQLGNLSSLQSLNLSCNRLS 118
           C  T V C   +  + VL      +++ L L G     +P +L N   L  ++LS NR+S
Sbjct: 10  CLDTVVRC--SNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIS 67

Query: 119 GSIPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNC 177
            ++ +  F+  T L  + L  N+L                   +    F G         
Sbjct: 68  -TLSNQSFSNMTQLLTLILSYNRLR-----------------CIPPRTFDG--------L 101

Query: 178 TYLRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGAN 212
             LR LSL  ND S  VP     +L+ L  L IGAN
Sbjct: 102 KSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 19/158 (12%)

Query: 87  NISSLNLRG---TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG 143
           N    NL     T       LS +Q+ N   + +  S+ + +     LK + L  N++  
Sbjct: 20  NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQ-SL-AGMQFFTNLKELHLSHNQI-- 75

Query: 144 QIPTNIC--SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
              +++    +L  LE LS++ N       + + +   L  L L  N+        + +L
Sbjct: 76  ---SDLSPLKDLTKLEELSVNRNRLK--NLNGIPSAC-LSRLFLDNNELRDTDS--LIHL 127

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
             L++L I  N+L+  I    G L++LE   L  N + 
Sbjct: 128 KNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 45.0 bits (107), Expect = 8e-06
 Identities = 28/140 (20%), Positives = 51/140 (36%), Gaps = 10/140 (7%)

Query: 99  SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158
           S L +L+ L+ L+++ NRL  ++         L  + L  N+L      ++  +L  LE 
Sbjct: 79  SPLKDLTKLEELSVNRNRLK-NLNGIPSA--CLSRLFLDNNELRD--TDSL-IHLKNLEI 132

Query: 159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI 218
           LS+  N         L   + L  L L  N+ +      +  L K+  + +   +   E 
Sbjct: 133 LSIRNNKLKS--IVMLGFLSKLEVLDLHGNEIT--NTGGLTRLKKVNWIDLTGQKCVNEP 188

Query: 219 PREFGNLTELEQFSLPTNNL 238
            +    L        P    
Sbjct: 189 VKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 27/144 (18%), Positives = 48/144 (33%), Gaps = 20/144 (13%)

Query: 99  SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNIC--SNLPFL 156
                L++    NL    ++  +     +   ++N +   + +      ++        L
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQKELS--GVQNFNGDNSNI-----QSLAGMQFFTNL 65

Query: 157 EFLSLSLNMFHGGIP--STLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRL 214
           + L LS N     I   S L + T L  LS+  N               L  L++  N L
Sbjct: 66  KELHLSHN----QISDLSPLKDLTKLEELSVNRNRLKNL---NGIPSACLSRLFLDNNEL 118

Query: 215 QGEIPREFGNLTELEQFSLPTNNL 238
           +        +L  LE  S+  N L
Sbjct: 119 RD--TDSLIHLKNLEILSIRNNKL 140

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 9e-06
 Identities = 31/128 (24%), Positives = 56/128 (43%), Gaps = 11/128 (8%)

Query: 97  IPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL 156
           + + L  L + + L LS N +   I S++  +  L+ +SLG+N +  +I  N+ +    L
Sbjct: 40  MDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILSLGRNLIK-KI-ENLDAVADTL 95

Query: 157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYN---DFSGAVPREIGNLTKLKVLYIGANR 213
           E L +S N       S +     LR L ++ N   ++       +  L KL+ L +  N 
Sbjct: 96  EELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEIDK--LAALDKLEDLLLAGNP 151

Query: 214 LQGEIPRE 221
           L  +    
Sbjct: 152 LYNDYKEN 159

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.1 bits (102), Expect = 1e-05
 Identities = 24/147 (16%), Positives = 40/147 (27%), Gaps = 41/147 (27%)

Query: 99  SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158
           +Q  N    + L+L   ++   I                          N+ + L   + 
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VI-------------------------ENLGATLDQFDA 46

Query: 159 LSLSLNMFHGGIPS--TLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG 216
           +  S N     I           L+TL +  N            L  L  L +  N L  
Sbjct: 47  IDFSDN----EIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV- 101

Query: 217 EIPREFGNLTELEQFSLPTNNLQVMIL 243
               E G+L  L        +L  + +
Sbjct: 102 ----ELGDLDPLASLK----SLTYLCI 120

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 23/108 (21%), Positives = 43/108 (39%), Gaps = 8/108 (7%)

Query: 86  LNISSLNLRGTIPSQLGNLSS----LQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL 141
           +    L+LRG     + NL +      +++ S N +   +      +  LK + +  N++
Sbjct: 19  VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVNNNRI 76

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHG-GIPSTLSNCTYLRTLSLAYN 188
             +I   +   LP L  L L+ N     G    L++   L  L +  N
Sbjct: 77  C-RIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 18/96 (18%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 96  TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYT-LKNVSLGKNKLSGQIPTNICSNLP 154
                L    +L  L +   +    +          L+N+++ K+ L   +  +     P
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTP 80

Query: 155 FLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDF 190
            L  L+LS N        T+   + L+ L L+ N  
Sbjct: 81  RLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 170 IPSTLSNCTYLRTLSLAYNDFSGAVPRE-IGNLTKLKVLYIGANRLQGEIPRE-FGNLTE 227
               L     L  L +        +    +  L +L+ L I  + L+  +  + F     
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPR 81

Query: 228 LEQFSLPTNNLQ 239
           L + +L  N L+
Sbjct: 82  LSRLNLSFNALE 93

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 40.5 bits (94), Expect = 3e-04
 Identities = 16/112 (14%), Positives = 33/112 (29%), Gaps = 2/112 (1%)

Query: 105 SSLQSLNLSC-NRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL 163
               S  L C    +      +     L  + +   +    +       L  L  L++  
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQ 215
           +      P        L  L+L++N    ++  +      L+ L +  N L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 42.3 bits (100), Expect = 4e-05
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 6/119 (5%)

Query: 120 SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTY 179
            IP  I        + L  N+L       +   LP L  L L  N   G  P+     ++
Sbjct: 22  EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASH 79

Query: 180 LRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPTN 236
           ++ L L  N     +  ++   L +LK L +  N++   +    F +L  L   +L +N
Sbjct: 80  IQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 38.8 bits (91), Expect = 5e-04
 Identities = 14/62 (22%), Positives = 28/62 (45%)

Query: 178 TYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237
            +L  L L  N  +G  P      + ++ L +G N+++    + F  L +L+  +L  N 
Sbjct: 54  PHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113

Query: 238 LQ 239
           + 
Sbjct: 114 IS 115

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 24/165 (14%), Positives = 48/165 (29%), Gaps = 34/165 (20%)

Query: 87  NISSLNLRG---------TIPSQLGNLSSLQSLNLSCNRLS-------------GSIPST 124
            + ++ L            +   L   + L+ L L  N L               ++   
Sbjct: 95  KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKK 154

Query: 125 IFTIYTLKNVSLGKNKLSGQIPTNICSNL---PFLEFLSLSLNMFH-----GGIPSTLSN 176
                 L+++  G+N+L                 L  + +  N          +   L+ 
Sbjct: 155 AKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAY 214

Query: 177 CTYLRTLSLAYNDFS--GAVP--REIGNLTKLKVLYIGANRLQGE 217
           C  L+ L L  N F+  G+      + +   L+ L +    L   
Sbjct: 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSAR 259

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 7/110 (6%)

Query: 130 TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPST--LSNCTYLRTLSLAY 187
            +K + L  ++ +      +      LEFLS        G+ S   L     L+ L L+ 
Sbjct: 18  DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV----GLTSIANLPKLNKLKKLELSD 73

Query: 188 NDFSGAVPREIGNLTKLKVLYIGANRLQG-EIPREFGNLTELEQFSLPTN 236
           N  SG +         L  L +  N+++          L  L+   L   
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 6e-05
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 4/98 (4%)

Query: 92  NLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICS 151
           +  G +         L+ L+     L+ SI + +  +  LK + L  N++SG     +  
Sbjct: 29  SNEGKLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSG-GLEVLAE 85

Query: 152 NLPFLEFLSLSLNMFHG-GIPSTLSNCTYLRTLSLAYN 188
             P L  L+LS N          L     L++L L   
Sbjct: 86  KCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 7e-05
 Identities = 24/111 (21%), Positives = 39/111 (35%), Gaps = 9/111 (8%)

Query: 130 TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPS--TLSNCTYLRTLSLAY 187
            ++ + L   K +      + +    LEFLSL       G+ S   L     L+ L L+ 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINV----GLISVSNLPKLPKLKKLELSE 80

Query: 188 NDFSGAVPREIGNLTKLKVLYIGANRLQ--GEIPREFGNLTELEQFSLPTN 236
           N   G +      L  L  L +  N+L+    +      L  L+   L   
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 24/98 (24%), Positives = 39/98 (39%), Gaps = 4/98 (4%)

Query: 92  NLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICS 151
           +  G I        +L+ L+L    L  S+ S +  +  LK + L +N++ G     +  
Sbjct: 36  SNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFG-GLDMLAE 92

Query: 152 NLPFLEFLSLSLNMFHG-GIPSTLSNCTYLRTLSLAYN 188
            LP L  L+LS N          L     L++L L   
Sbjct: 93  KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 40.3 bits (95), Expect = 2e-04
 Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 5/96 (5%)

Query: 145 IPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKL 204
           +PT I S+      L L  N             T L  LSL+ N            LTKL
Sbjct: 22  VPTGIPSSA---TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKL 78

Query: 205 KVLYIGANRLQGEIPRE-FGNLTELEQFSLPTNNLQ 239
            +LY+  N+LQ  +P   F  LT+L++ +L TN L+
Sbjct: 79  TILYLHENKLQ-SLPNGVFDKLTQLKELALDTNQLK 113

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 39.5 bits (93), Expect = 3e-04
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 169 GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL 228
           GIP+T       + L L  N  +   P     LT+L  L +  N+L       F  LT+L
Sbjct: 27  GIPTTT------QVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQL 80

Query: 229 EQFSLPTNNLQ 239
            Q SL  N L+
Sbjct: 81  TQLSLNDNQLK 91

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 169 GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL 228
           GIP+        + L L  N  +   P    +L  L+ LY  +N+L       F  LT+L
Sbjct: 30  GIPTDK------QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQL 83

Query: 229 EQFSLPTNNLQ 239
            Q  L  N+L+
Sbjct: 84  TQLDLNDNHLK 94

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.6 bits (93), Expect = 7e-04
 Identities = 23/134 (17%), Positives = 43/134 (32%), Gaps = 17/134 (12%)

Query: 101 LGNLSSLQSLNLSCNRLSGSIPSTIFTI-----YTLKNVSLGKNKLSGQIPTNICSNL-- 153
           L      + L +S N ++ +    +          L+ + L    ++     ++C  +  
Sbjct: 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVAS 225

Query: 154 -PFLEFLSLSLNMFHGG-----IPSTLSNCTYLRTLSLAYNDFSGAVPREIG----NLTK 203
              L  L+L  N           P  L   + LRTL +     +     ++         
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285

Query: 204 LKVLYIGANRLQGE 217
           LK L +  N L  E
Sbjct: 286 LKELSLAGNELGDE 299

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.94
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.91
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.91
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.9
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.9
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.9
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.89
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.87
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.87
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.87
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.87
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.87
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.87
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.86
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.86
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.86
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.86
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.86
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.85
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.84
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.84
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.83
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.83
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.83
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.82
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.82
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.82
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.81
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.81
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.8
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.8
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.8
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.79
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.79
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.79
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.78
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.78
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.77
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.77
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.76
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.76
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.76
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.76
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.75
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.75
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.75
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.75
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.75
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.75
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.74
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.74
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.73
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.72
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.71
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.69
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.69
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.68
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.66
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.66
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.65
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.64
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.63
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.63
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.62
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.61
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.61
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.6
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.6
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.59
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.58
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.58
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.57
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.42
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.37
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.3
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.27
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.26
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.18
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.16
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.1
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.92
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.79
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.78
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.74
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.64
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.44
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.34
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.34
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.32
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.28
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.23
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.1
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	98.06
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.85
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.63
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.5
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.25
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.05

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2e-32  Score=228.46  Aligned_cols=213  Identities=34%  Similarity=0.547  Sum_probs=191.6

Q ss_pred             CCChhhHHHHHHHHHhcCCCCCccccCCCCCCCCCCc--cceeeeCCCC--CeEEEEEeCCCCccc--cCCccCCCCCCC
Q 025426           34 SSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCN--WTGVACDVHS--HRVTVLNISSLNLRG--TIPSQLGNLSSL  107 (253)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~w~~~~~~c~--~~g~~c~~~~--~~l~~L~l~~~~l~~--~~~~~~~~l~~L  107 (253)
                      .|.+.|..+|+++|..+. +|. .+.+ |..+.++|.  |.|+.|+...  .+++.|+++++.+.+  .+|..+..+++|
T Consensus         2 ~c~~~~~~aL~~~k~~~~-~~~-~l~~-W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L   78 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLG-NPT-TLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CCG-GGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHhcC-Ccc-cccC-CCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence            477889999999999994 665 6777 988888998  9999998543  789999999999998  899999999999


Q ss_pred             CEEECCC-CCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeee
Q 025426          108 QSLNLSC-NRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLA  186 (253)
Q Consensus       108 ~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  186 (253)
                      ++|++++ |.+.+.+|..+..+++|++|++++|.+++.+|..+ ..+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus        79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  157 (313)
T 1ogq_A           79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGG-GGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHH-hCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence            9999995 99998999999999999999999999997888876 889999999999999998899999999999999999


Q ss_pred             cCcCcccCCccccCCC-CCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426          187 YNDFSGAVPREIGNLT-KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       187 ~n~l~~~~p~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  251 (253)
                      +|++++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+++.+|..|..+++
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~  222 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKN  222 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSC
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCC
Confidence            9999989999999988 999999999999988888888887 899999999988888887776653

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.96  E-value=1.2e-28  Score=228.46  Aligned_cols=209  Identities=26%  Similarity=0.378  Sum_probs=143.2

Q ss_pred             CCCChhhHHHHHHHHHhcCCCCCccccCCCCCCCCCCccceeeeCCCCCeEEEEEeCCCCcccc---CC-----------
Q 025426           33 TSSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGT---IP-----------   98 (253)
Q Consensus        33 ~~~~~~~~~~l~~~~~~~~~~~~~~l~~~w~~~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~---~~-----------   98 (253)
                      .+..+.|+.+|++||+.+. ||. .+++ |..+.++|.|.||.|+  .++|+.|+++++.+.+.   ++           
T Consensus         7 ~~~~~~~~~all~~k~~~~-~~~-~l~~-W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~   81 (768)
T 3rgz_A            7 SQSLYREIHQLISFKDVLP-DKN-LLPD-WSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES   81 (768)
T ss_dssp             -CCHHHHHHHHHHHHTTCS-CTT-SSTT-CCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred             ccCCHHHHHHHHHHHhhCC-Ccc-cccC-CCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence            3346679999999999996 777 7888 9888899999999998  47999999999988765   33           


Q ss_pred             ------------ccCCCCCCCCEEECCCCCCCCcCCh--hhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecC
Q 025426           99 ------------SQLGNLSSLQSLNLSCNRLSGSIPS--TIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLN  164 (253)
Q Consensus        99 ------------~~~~~l~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  164 (253)
                                  ..+..+++|++|++++|.+.+.+|.  .+..+++|++|++++|.+.+.+|..++..+++|++|++++|
T Consensus        82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n  161 (768)
T 3rgz_A           82 LFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN  161 (768)
T ss_dssp             EECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSS
T ss_pred             cCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCC
Confidence                        4677788888999998888877777  78888888888888888877777655456777777777777


Q ss_pred             cCCCCCCcc---CCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCcee
Q 025426          165 MFHGGIPST---LSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM  241 (253)
Q Consensus       165 ~~~~~~~~~---~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  241 (253)
                      .+++..|..   +.++++|++|++++|.+.+..+.  ..+++|++|++++|.+++.+|. ++.+++|++|++++|.+++.
T Consensus       162 ~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~  238 (768)
T 3rgz_A          162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD  238 (768)
T ss_dssp             CCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred             ccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence            776555544   44555555555555544433221  3444455555555554444443 44455555555555555544


Q ss_pred             cchhhhhc
Q 025426          242 ILNFLQFY  249 (253)
Q Consensus       242 ~p~~~~~l  249 (253)
                      +|..+..+
T Consensus       239 ~~~~l~~l  246 (768)
T 3rgz_A          239 FSRAISTC  246 (768)
T ss_dssp             HHHHTTTC
T ss_pred             ccHHHhcC
Confidence            44444443

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.95  E-value=2.2e-28  Score=205.30  Aligned_cols=211  Identities=22%  Similarity=0.314  Sum_probs=138.9

Q ss_pred             CCChhhHHHHHHHHHhcCCCCCccccCCC----CCCCCCCccceeeeC--------CCCCeEEEEEeCCCCccccCCccC
Q 025426           34 SSTITDRDALLALKAHITHDPTNFLAKNW----NTSTPVCNWTGVACD--------VHSHRVTVLNISSLNLRGTIPSQL  101 (253)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~w----~~~~~~c~~~g~~c~--------~~~~~l~~L~l~~~~l~~~~~~~~  101 (253)
                      .....+..+|..|+..+..++..+... |    ......|.|.|+.|.        ....+++.|++++|.+. .+|..+
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~-w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l  100 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRNRWHSA-WRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA  100 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCTTHHHH-HHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred             ccCchHHHHHHHHHHhccCCchhhhhh-hcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence            445578899999999887788777777 8    456789999999884        23467888888888887 667667


Q ss_pred             CCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCC-----
Q 025426          102 GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSN-----  176 (253)
Q Consensus       102 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-----  176 (253)
                      ..+++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|..+..     
T Consensus       101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l-~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~  177 (328)
T 4fcg_A          101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASI-ASLNRLRELSIRACPELTELPEPLASTDASG  177 (328)
T ss_dssp             GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGG-GGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred             hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHH-hcCcCCCEEECCCCCCccccChhHhhccchh
Confidence            77778888888888777 67777777777777777777777 777665 66667777777766555555544332     


Q ss_pred             ----CCCcceEeeecCcCcccCCcc-----------------------ccCCCCCCeeecccCcCcccCChhhcCCCCCC
Q 025426          177 ----CTYLRTLSLAYNDFSGAVPRE-----------------------IGNLTKLKVLYIGANRLQGEIPREFGNLTELE  229 (253)
Q Consensus       177 ----l~~L~~L~L~~n~l~~~~p~~-----------------------l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  229 (253)
                          +++|++|++++|.++ .+|..                       +..+++|++|++++|.+.+.+|..++.+++|+
T Consensus       178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~  256 (328)
T 4fcg_A          178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK  256 (328)
T ss_dssp             CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred             hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence                455555555555544 44444                       44445555555555554444555555555555


Q ss_pred             EEeccCCCCceecchhhhhcc
Q 025426          230 QFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       230 ~L~l~~n~l~~~~p~~~~~l~  250 (253)
                      .|++++|++.+.+|..+..++
T Consensus       257 ~L~L~~n~~~~~~p~~~~~l~  277 (328)
T 4fcg_A          257 RLILKDCSNLLTLPLDIHRLT  277 (328)
T ss_dssp             EEECTTCTTCCBCCTTGGGCT
T ss_pred             EEECCCCCchhhcchhhhcCC
Confidence            555555555555555554443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=2.5e-28  Score=221.82  Aligned_cols=209  Identities=21%  Similarity=0.328  Sum_probs=183.1

Q ss_pred             hhhHHHHHHHHHhcCCCCCcccc------CCCCCCCCCCcc---ceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCC
Q 025426           37 ITDRDALLALKAHITHDPTNFLA------KNWNTSTPVCNW---TGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSL  107 (253)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~l~------~~w~~~~~~c~~---~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L  107 (253)
                      ..|..+|..++..+.+..+....      ..|..+.++|.|   .||.|+.. ++|+.|+|+++++.|.+|+.+..+++|
T Consensus        29 ~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~~L  107 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLTEL  107 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCTTC
T ss_pred             HHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCccc
Confidence            35889999999988544332211      149999999999   99999854 789999999999999999999999999


Q ss_pred             CEEECCCCCC----------------------------------------------------------------------
Q 025426          108 QSLNLSCNRL----------------------------------------------------------------------  117 (253)
Q Consensus       108 ~~L~l~~n~l----------------------------------------------------------------------  117 (253)
                      +.|++++|.+                                                                      
T Consensus       108 ~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~  187 (636)
T 4eco_A          108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQ  187 (636)
T ss_dssp             CEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTT
T ss_pred             eEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhh
Confidence            9999998843                                                                      


Q ss_pred             --------CCcCChhhhccCCCCEEEccCCCCcCc-----------------CchhHhc--CCCCccEEEeecCcCCCCC
Q 025426          118 --------SGSIPSTIFTIYTLKNVSLGKNKLSGQ-----------------IPTNICS--NLPFLEFLSLSLNMFHGGI  170 (253)
Q Consensus       118 --------~~~~~~~l~~l~~L~~L~l~~n~l~~~-----------------~~~~~~~--~l~~L~~L~l~~n~~~~~~  170 (253)
                              ++ +|..+.++++|++|++++|.+++.                 +|+.+ .  .+++|++|++++|.+.+.+
T Consensus       188 l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l-~~~~l~~L~~L~L~~n~l~~~~  265 (636)
T 4eco_A          188 IGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDL-KWDNLKDLTDVEVYNCPNLTKL  265 (636)
T ss_dssp             TTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCC-CGGGCTTCCEEEEECCTTCSSC
T ss_pred             hccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhh-hhcccCCCCEEEecCCcCCccC
Confidence                    23 788899999999999999999965                 88887 6  8999999999999999999


Q ss_pred             CccCCCCCCcceEeeecCc-Ccc-cCCccccCC------CCCCeeecccCcCcccCCh--hhcCCCCCCEEeccCCCCce
Q 025426          171 PSTLSNCTYLRTLSLAYND-FSG-AVPREIGNL------TKLKVLYIGANRLQGEIPR--EFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       171 ~~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l------~~L~~L~l~~n~l~~~~~~--~~~~l~~L~~L~l~~n~l~~  240 (253)
                      |..+.++++|++|++++|+ +++ .+|..+..+      ++|++|++++|.++ .+|.  .++.+++|+.|++++|.++|
T Consensus       266 p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g  344 (636)
T 4eco_A          266 PTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEG  344 (636)
T ss_dssp             CTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEE
T ss_pred             hHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCcc
Confidence            9999999999999999998 988 788888776      89999999999999 7888  89999999999999999998


Q ss_pred             ecchhhhhcc
Q 025426          241 MILNFLQFYS  250 (253)
Q Consensus       241 ~~p~~~~~l~  250 (253)
                      .+| .+..++
T Consensus       345 ~ip-~~~~l~  353 (636)
T 4eco_A          345 KLP-AFGSEI  353 (636)
T ss_dssp             ECC-CCEEEE
T ss_pred             chh-hhCCCC
Confidence            888 666554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.94  E-value=1e-26  Score=216.43  Aligned_cols=204  Identities=23%  Similarity=0.363  Sum_probs=170.6

Q ss_pred             ChhhHHHHHHHHHhcCCCCCccccCCCCCCC-----CC--Ccc------------ceeeeCCCCCeEEEEEeCCCCcccc
Q 025426           36 TITDRDALLALKAHITHDPTNFLAKNWNTST-----PV--CNW------------TGVACDVHSHRVTVLNISSLNLRGT   96 (253)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~l~~~w~~~~-----~~--c~~------------~g~~c~~~~~~l~~L~l~~~~l~~~   96 (253)
                      ...|..+|++++..+. +|     + |..+.     ++  |.|            .|+.|+. ..+|+.|+|+++++.|.
T Consensus       267 ~~~d~~ALl~~k~~l~-~~-----~-W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~  338 (876)
T 4ecn_A          267 YIKDYKALKAIWEALD-GK-----N-WRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGR  338 (876)
T ss_dssp             HHHHHHHHHHHHHHTT-GG-----G-CCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEE
T ss_pred             chHHHHHHHHHHHHcC-CC-----C-CCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCc
Confidence            4469999999999984 55     3 65443     44  999            9999985 37899999999999999


Q ss_pred             CCccCCCCCCCCEEEC-CCCCCCCc-------------------------------------------------------
Q 025426           97 IPSQLGNLSSLQSLNL-SCNRLSGS-------------------------------------------------------  120 (253)
Q Consensus        97 ~~~~~~~l~~L~~L~l-~~n~l~~~-------------------------------------------------------  120 (253)
                      +|+.+..+++|+.|++ ++|.+.|.                                                       
T Consensus       339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~  418 (876)
T 4ecn_A          339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK  418 (876)
T ss_dssp             ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred             CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence            9999999999999999 66643222                                                       


Q ss_pred             ---------------------CChhhhccCCCCEEEccCCCCcC-----------------cCchhH-hcCCCCccEEEe
Q 025426          121 ---------------------IPSTIFTIYTLKNVSLGKNKLSG-----------------QIPTNI-CSNLPFLEFLSL  161 (253)
Q Consensus       121 ---------------------~~~~l~~l~~L~~L~l~~n~l~~-----------------~~~~~~-~~~l~~L~~L~l  161 (253)
                                           +|..+.++++|++|++++|.+++                 .+|+.+ |..+++|++|++
T Consensus       419 ~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~L  498 (876)
T 4ecn_A          419 KDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVEL  498 (876)
T ss_dssp             CCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEE
T ss_pred             cccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEEC
Confidence                                 77889999999999999999996                 388877 338999999999


Q ss_pred             ecCcCCCCCCccCCCCCCcceEeeecCc-Ccc-cCCccccCCC-------CCCeeecccCcCcccCCh--hhcCCCCCCE
Q 025426          162 SLNMFHGGIPSTLSNCTYLRTLSLAYND-FSG-AVPREIGNLT-------KLKVLYIGANRLQGEIPR--EFGNLTELEQ  230 (253)
Q Consensus       162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~-~~p~~l~~l~-------~L~~L~l~~n~l~~~~~~--~~~~l~~L~~  230 (253)
                      ++|.+.+.+|..+..+++|++|++++|+ +++ .+|..+.+++       +|++|++++|.++ .+|.  .++.+++|+.
T Consensus       499 s~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~  577 (876)
T 4ecn_A          499 YNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGL  577 (876)
T ss_dssp             ESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCE
T ss_pred             cCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCE
Confidence            9999999999999999999999999998 887 6777665544       8999999999888 7777  8888888888


Q ss_pred             EeccCCCCceecchhhhhcc
Q 025426          231 FSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       231 L~l~~n~l~~~~p~~~~~l~  250 (253)
                      |++++|.++ .+| .|..++
T Consensus       578 L~Ls~N~l~-~lp-~~~~L~  595 (876)
T 4ecn_A          578 LDCVHNKVR-HLE-AFGTNV  595 (876)
T ss_dssp             EECTTSCCC-BCC-CCCTTS
T ss_pred             EECCCCCcc-cch-hhcCCC
Confidence            888888888 555 555544

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=2.9e-25  Score=181.28  Aligned_cols=170  Identities=25%  Similarity=0.280  Sum_probs=143.9

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      .+++.|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEE
Confidence            45888999999988666678889999999999999998555556678999999999999998 77777778889999999


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++
T Consensus       116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (270)
T 2o6q_A          116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR  195 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc
Confidence            99999987777778889999999999999986666668888999999999999987777778889999999999999998


Q ss_pred             ecchhhhhccc
Q 025426          241 MILNFLQFYSS  251 (253)
Q Consensus       241 ~~p~~~~~l~~  251 (253)
                      .++..+..+++
T Consensus       196 ~~~~~~~~l~~  206 (270)
T 2o6q_A          196 VPEGAFDSLEK  206 (270)
T ss_dssp             CCTTTTTTCTT
T ss_pred             CCHHHhccccC
Confidence            88877776653

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.92  E-value=1.5e-24  Score=175.27  Aligned_cols=161  Identities=23%  Similarity=0.292  Sum_probs=146.5

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      +..++.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|
T Consensus        34 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  112 (251)
T 3m19_A           34 PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKL  112 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEE
Confidence            356899999999999888888999999999999999999888888999999999999999998 7777777899999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      ++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++.
T Consensus       113 ~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             EcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence            99999999666677899999999999999999777778999999999999999999877888999999999999999998


Q ss_pred             ee
Q 025426          240 VM  241 (253)
Q Consensus       240 ~~  241 (253)
                      ..
T Consensus       193 c~  194 (251)
T 3m19_A          193 CS  194 (251)
T ss_dssp             TT
T ss_pred             CC
Confidence            76

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=2.4e-24  Score=199.62  Aligned_cols=86  Identities=36%  Similarity=0.556  Sum_probs=44.2

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      +++.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+ ..+++|++|++
T Consensus       467 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~L~~L~L  545 (768)
T 3rgz_A          467 TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL-GDCRSLIWLDL  545 (768)
T ss_dssp             TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG-GGCTTCCEEEC
T ss_pred             CceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHH-cCCCCCCEEEC
Confidence            44555555555555555555555555555555555555555555555555555555555554444444 44444555555


Q ss_pred             ecCcCCC
Q 025426          162 SLNMFHG  168 (253)
Q Consensus       162 ~~n~~~~  168 (253)
                      ++|.+++
T Consensus       546 s~N~l~g  552 (768)
T 3rgz_A          546 NTNLFNG  552 (768)
T ss_dssp             CSSEEES
T ss_pred             CCCccCC
Confidence            5444443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.92  E-value=9.6e-25  Score=171.39  Aligned_cols=179  Identities=20%  Similarity=0.241  Sum_probs=152.9

Q ss_pred             CCCCccceeeeCC---------CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEc
Q 025426           66 TPVCNWTGVACDV---------HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSL  136 (253)
Q Consensus        66 ~~~c~~~g~~c~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  136 (253)
                      ...|.|.++.|..         ..++++.|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus         4 ~C~C~~~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L   83 (208)
T 2o6s_A            4 RCSCSGTTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNL   83 (208)
T ss_dssp             TCEEETTEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCEECCCEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEEC
Confidence            3458888888862         2456899999999999766777889999999999999998666667788999999999


Q ss_pred             cCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc
Q 025426          137 GKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG  216 (253)
Q Consensus       137 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  216 (253)
                      ++|.++ .++...+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+
T Consensus        84 s~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A           84 STNQLQ-SLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             CCCcCC-ccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            999998 7777766889999999999999987666778899999999999999997666678889999999999998874


Q ss_pred             cCChhhcCCCCCCEEeccCCCCceecchhhhhcccC
Q 025426          217 EIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSS  252 (253)
Q Consensus       217 ~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~  252 (253)
                      .       +++++.|++..|+++|.+|++++.+++.
T Consensus       163 ~-------~~~l~~L~~~~n~~~g~ip~~~~~l~~~  191 (208)
T 2o6s_A          163 T-------CPGIRYLSEWINKHSGVVRNSAGSVAPD  191 (208)
T ss_dssp             C-------TTTTHHHHHHHHHCTTTBBCTTSSBCTT
T ss_pred             C-------CCCHHHHHHHHHhCCceeeccCccccCC
Confidence            3       4578999999999999999999888753

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=9.8e-24  Score=173.39  Aligned_cols=172  Identities=24%  Similarity=0.271  Sum_probs=136.5

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCC-CCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCcc
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNR-LSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLE  157 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  157 (253)
                      ..++++.|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+. .+++..+..+++|+
T Consensus        54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~  132 (285)
T 1ozn_A           54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQ  132 (285)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC
T ss_pred             cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCC
Confidence            34678888888888887777778888888888888886 66555777888888888888888887 55444447788888


Q ss_pred             EEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCC
Q 025426          158 FLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN  237 (253)
Q Consensus       158 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  237 (253)
                      +|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|+.|++++|.
T Consensus       133 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  212 (285)
T 1ozn_A          133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN  212 (285)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCc
Confidence            88888888876666667888888888888888886666668888888888888888887778888888888888888888


Q ss_pred             Cceecchhhhhccc
Q 025426          238 LQVMILNFLQFYSS  251 (253)
Q Consensus       238 l~~~~p~~~~~l~~  251 (253)
                      +++.++..+..+++
T Consensus       213 l~~~~~~~~~~l~~  226 (285)
T 1ozn_A          213 LSALPTEALAPLRA  226 (285)
T ss_dssp             CSCCCHHHHTTCTT
T ss_pred             CCcCCHHHcccCcc
Confidence            88888777776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=3.2e-24  Score=179.92  Aligned_cols=167  Identities=18%  Similarity=0.260  Sum_probs=141.5

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhc---------cCCCCEEEccCCCCcCcCchhHhc
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFT---------IYTLKNVSLGKNKLSGQIPTNICS  151 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~---------l~~L~~L~l~~n~l~~~~~~~~~~  151 (253)
                      ++++.|++++|.+. .+|..+..+++|+.|++++|++.+.+|..+..         +++|++|++++|.++ .+|..+ .
T Consensus       127 ~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l-~  203 (328)
T 4fcg_A          127 AGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI-A  203 (328)
T ss_dssp             TTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGG-G
T ss_pred             CCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhh-c
Confidence            45677777777776 66666777777777777777666666665543         777888888888877 777775 7


Q ss_pred             CCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEE
Q 025426          152 NLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQF  231 (253)
Q Consensus       152 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  231 (253)
                      .+++|++|++++|.++ .+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|
T Consensus       204 ~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L  282 (328)
T 4fcg_A          204 NLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKL  282 (328)
T ss_dssp             GCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEE
T ss_pred             CCCCCCEEEccCCCCC-cCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEE
Confidence            8899999999999998 466678899999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCCCCceecchhhhhccc
Q 025426          232 SLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       232 ~l~~n~l~~~~p~~~~~l~~  251 (253)
                      ++++|++.+.+|+++..+++
T Consensus       283 ~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          283 DLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             ECTTCTTCCCCCGGGGGSCT
T ss_pred             eCCCCCchhhccHHHhhccC
Confidence            99999999999999999875

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.91  E-value=1.5e-24  Score=180.82  Aligned_cols=166  Identities=25%  Similarity=0.414  Sum_probs=78.5

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCC-CccEEE
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLP-FLEFLS  160 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~-~L~~L~  160 (253)
                      ++++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++.+|..+ ..+. +|++|+
T Consensus       102 ~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l-~~l~~~L~~L~  180 (313)
T 1ogq_A          102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMT  180 (313)
T ss_dssp             TCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG-GCCCTTCCEEE
T ss_pred             CCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH-hhhhhcCcEEE
Confidence            34444444444444444444444444444444444444444444444555555555555444444444 3333 444444


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++.+|. +..+++|++|++++|.+++
T Consensus       181 L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~  258 (313)
T 1ogq_A          181 ISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYG  258 (313)
T ss_dssp             CCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEE
T ss_pred             CcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccC
Confidence            444444433343333333 44444444444444444444455555555555554433332 4445555555555555555


Q ss_pred             ecchhhhhcc
Q 025426          241 MILNFLQFYS  250 (253)
Q Consensus       241 ~~p~~~~~l~  250 (253)
                      .+|.++..++
T Consensus       259 ~~p~~l~~l~  268 (313)
T 1ogq_A          259 TLPQGLTQLK  268 (313)
T ss_dssp             CCCGGGGGCT
T ss_pred             cCChHHhcCc
Confidence            5555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.91  E-value=1.5e-23  Score=172.32  Aligned_cols=169  Identities=17%  Similarity=0.168  Sum_probs=108.0

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCC-CcCcCchhHhcCCCCccEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK-LSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L  159 (253)
                      ++++.|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|. +. .+++..+..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEE
Confidence            456666666666665555566666666666666666665556666666666666666665 54 4444334666666666


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      ++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.++
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  190 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccc
Confidence            66666666555566666666666666666666554555666666666666666666554555666666666666666666


Q ss_pred             eecchhhhhcc
Q 025426          240 VMILNFLQFYS  250 (253)
Q Consensus       240 ~~~p~~~~~l~  250 (253)
                      +..|..+..++
T Consensus       191 ~~~~~~~~~l~  201 (285)
T 1ozn_A          191 HVHPHAFRDLG  201 (285)
T ss_dssp             EECTTTTTTCT
T ss_pred             ccCHhHccCcc
Confidence            66666665544

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.90  E-value=2.1e-23  Score=181.60  Aligned_cols=168  Identities=24%  Similarity=0.316  Sum_probs=111.3

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ++++.|++++|.+.+..+..|.++++|+.|++++|.++...+..+..+++|++|++++|.+. .++...|..+++|++|+
T Consensus        88 ~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L~  166 (440)
T 3zyj_A           88 RHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLD  166 (440)
T ss_dssp             SSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEeC
Confidence            45566666666665555555566666666666666665444445555666666666666665 55554445666666666


Q ss_pred             eecCc-CCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          161 LSLNM-FHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       161 l~~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      +++|. +....+..|.++++|++|++++|.++ .+| .+..+++|++|++++|.+++..|..|..+++|+.|++++|.++
T Consensus       167 l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~  244 (440)
T 3zyj_A          167 LGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ  244 (440)
T ss_dssp             CCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred             CCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCcee
Confidence            66633 33223345667777777777777777 344 4667788888888888888777888888888888888888888


Q ss_pred             eecchhhhhccc
Q 025426          240 VMILNFLQFYSS  251 (253)
Q Consensus       240 ~~~p~~~~~l~~  251 (253)
                      +..+..|.++++
T Consensus       245 ~~~~~~~~~l~~  256 (440)
T 3zyj_A          245 VIERNAFDNLQS  256 (440)
T ss_dssp             EECTTSSTTCTT
T ss_pred             EEChhhhcCCCC
Confidence            888887776654

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=2.2e-23  Score=176.39  Aligned_cols=166  Identities=23%  Similarity=0.271  Sum_probs=125.2

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      +++++|++++|++++..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .++...+..+++|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEE
Confidence            46788888888888666667788888888888888887666777888888888888888887 67776557788888888


Q ss_pred             eecCcCCCCCC-ccCCCCCCcceEeeecC-cCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426          161 LSLNMFHGGIP-STLSNCTYLRTLSLAYN-DFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       161 l~~n~~~~~~~-~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      +++|.++...+ ..+..+++|++|++++| .+.+..+..+.++++|++|++++|.+++..|..+..+++|+.|++++|.+
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            88888874333 36777888888888887 46655566777788888888888888777777787777778888877777


Q ss_pred             ceecchhhh
Q 025426          239 QVMILNFLQ  247 (253)
Q Consensus       239 ~~~~p~~~~  247 (253)
                      +..++..+.
T Consensus       211 ~~~~~~~~~  219 (353)
T 2z80_A          211 ILLLEIFVD  219 (353)
T ss_dssp             TTHHHHHHH
T ss_pred             ccchhhhhh
Confidence            655544443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.90  E-value=2.1e-23  Score=172.99  Aligned_cols=181  Identities=23%  Similarity=0.290  Sum_probs=104.7

Q ss_pred             CCCccceeeeCC---------CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCc--CChhhhccCCCCEEE
Q 025426           67 PVCNWTGVACDV---------HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGS--IPSTIFTIYTLKNVS  135 (253)
Q Consensus        67 ~~c~~~g~~c~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~  135 (253)
                      ..|.|.++.|..         .++++++|++++|.++...+..|..+++|+.|++++|.+...  .+..+..+++|++|+
T Consensus         5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~   84 (306)
T 2z66_A            5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD   84 (306)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred             CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence            447777777761         234688899999988844444578888888888888887622  245555566666666


Q ss_pred             ccCCCCcCcCchhHhcCCCCccEEEeecCcCC-------------------------CCCCccCCCCCCcceEeeecCcC
Q 025426          136 LGKNKLSGQIPTNICSNLPFLEFLSLSLNMFH-------------------------GGIPSTLSNCTYLRTLSLAYNDF  190 (253)
Q Consensus       136 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-------------------------~~~~~~~~~l~~L~~L~L~~n~l  190 (253)
                      +++|.+. .+|..+ ..+++|++|++++|.++                         +..+..+..+++|++|++++|.+
T Consensus        85 Ls~n~i~-~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  162 (306)
T 2z66_A           85 LSFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF  162 (306)
T ss_dssp             CCSCSEE-EEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred             CCCCccc-cChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence            6666655 444433 44555555555555544                         33344444444555555555544


Q ss_pred             cc-cCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhc
Q 025426          191 SG-AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFY  249 (253)
Q Consensus       191 ~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  249 (253)
                      .+ ..|..+..+++|++|++++|.+++..|..+..+++|+.|++++|.+++.++..+..+
T Consensus       163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  222 (306)
T 2z66_A          163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL  222 (306)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTC
T ss_pred             ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCc
Confidence            43 244445555555555555555554445555555555555555555555555444433

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.90  E-value=5.8e-23  Score=179.40  Aligned_cols=168  Identities=20%  Similarity=0.217  Sum_probs=108.2

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      .+++.|++++|++++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+++..|..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEE
Confidence            35666666666666655666666666666666666666555566666666666666666666 55555445666666666


Q ss_pred             eecCcCCCCCCc-------------------------cCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCc
Q 025426          161 LSLNMFHGGIPS-------------------------TLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQ  215 (253)
Q Consensus       161 l~~n~~~~~~~~-------------------------~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  215 (253)
                      +++|.++...+.                         .|.++++|++|++++|.+++ +| .+..+++|++|++++|.++
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~  231 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFP  231 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCS
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCc
Confidence            666666533333                         34555566666666666653 23 3556667777777777777


Q ss_pred             ccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426          216 GEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       216 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  251 (253)
                      +..|..|..+++|+.|++++|.+++..|..|.++++
T Consensus       232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  267 (452)
T 3zyi_A          232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLAS  267 (452)
T ss_dssp             EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCC
Confidence            666777777777888888888777777777766553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.90  E-value=2e-22  Score=162.67  Aligned_cols=178  Identities=24%  Similarity=0.287  Sum_probs=156.3

Q ss_pred             CCCccceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCc
Q 025426           67 PVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIP  146 (253)
Q Consensus        67 ~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~  146 (253)
                      .++.|.|..|.   ...++++++++.++ .+|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.++ .++
T Consensus         3 ~Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~   75 (251)
T 3m19_A            3 TCETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLS   75 (251)
T ss_dssp             -CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCC
T ss_pred             cCCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCC-ccC
Confidence            35678888884   34568999999998 6776665  68999999999999888888999999999999999999 666


Q ss_pred             hhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCC
Q 025426          147 TNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLT  226 (253)
Q Consensus       147 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~  226 (253)
                      +..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..|+.++
T Consensus        76 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  155 (251)
T 3m19_A           76 AGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT  155 (251)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             HhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence            66668999999999999999977778889999999999999999977677788999999999999999977777899999


Q ss_pred             CCCEEeccCCCCceecchhhhhccc
Q 025426          227 ELEQFSLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       227 ~L~~L~l~~n~l~~~~p~~~~~l~~  251 (253)
                      +|+.|++++|++++.++..+..+++
T Consensus       156 ~L~~L~L~~N~l~~~~~~~~~~l~~  180 (251)
T 3m19_A          156 NLQTLSLSTNQLQSVPHGAFDRLGK  180 (251)
T ss_dssp             TCCEEECCSSCCSCCCTTTTTTCTT
T ss_pred             CCCEEECCCCcCCccCHHHHhCCCC
Confidence            9999999999999999988877654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=1.7e-22  Score=165.08  Aligned_cols=161  Identities=26%  Similarity=0.307  Sum_probs=142.1

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      .++++.|++++|.+.+ + ..+..+++|++|++++|.+++..+..+..+++|++|++++|.++ .+++..+..+++|++|
T Consensus        62 l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  138 (272)
T 3rfs_A           62 LPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYL  138 (272)
T ss_dssp             CTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEE
Confidence            4789999999999985 3 46888999999999999999777777889999999999999998 7777666889999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      ++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.
T Consensus       139 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCcc
Confidence            99999998776777889999999999999999777777889999999999999999888888999999999999999887


Q ss_pred             eecc
Q 025426          240 VMIL  243 (253)
Q Consensus       240 ~~~p  243 (253)
                      +..|
T Consensus       219 ~~~~  222 (272)
T 3rfs_A          219 CTCP  222 (272)
T ss_dssp             CCTT
T ss_pred             ccCc
Confidence            6655

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.89  E-value=2.2e-22  Score=160.37  Aligned_cols=165  Identities=25%  Similarity=0.325  Sum_probs=130.5

Q ss_pred             CCCCCCCCccceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCC
Q 025426           62 WNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL  141 (253)
Q Consensus        62 w~~~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  141 (253)
                      |..+...|.|+++.|.            ++++. .+|..+.  ++|+.|++++|.+.+..+..+..+++|++|++++|.+
T Consensus        12 ~~~~~~~Cs~~~v~c~------------~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l   76 (229)
T 3e6j_A           12 ACPSQCSCSGTTVDCR------------SKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL   76 (229)
T ss_dssp             CCCTTCEEETTEEECT------------TSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             cCCCCCEEeCCEeEcc------------CCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCC
Confidence            6677788999888885            33344 5555443  7888888888888877777888888888888888888


Q ss_pred             cCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChh
Q 025426          142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE  221 (253)
Q Consensus       142 ~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~  221 (253)
                      . .++...|..+++|++|++++|.+++..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..
T Consensus        77 ~-~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~  154 (229)
T 3e6j_A           77 G-ALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA  154 (229)
T ss_dssp             C-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred             C-CcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence            6 777776678888888888888888666666788888888888888888 67777888888888888888888666677


Q ss_pred             hcCCCCCCEEeccCCCCceecc
Q 025426          222 FGNLTELEQFSLPTNNLQVMIL  243 (253)
Q Consensus       222 ~~~l~~L~~L~l~~n~l~~~~p  243 (253)
                      +..+++|+.|++++|++....+
T Consensus       155 ~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          155 FDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTTCTTCCEEECTTSCBCTTBG
T ss_pred             HhCCCCCCEEEeeCCCccCCcc
Confidence            8888888888888888875543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.89  E-value=1.1e-22  Score=178.71  Aligned_cols=170  Identities=18%  Similarity=0.238  Sum_probs=146.2

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      +.+++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+|...|..+++|++|
T Consensus        31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKL  109 (477)
T ss_dssp             CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-SCCTTSSTTCTTCCEE
T ss_pred             CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCC-ccCcccccCCCCCCEE
Confidence            356889999999998777888889999999999999998777888889999999999999998 7887777888999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      ++++|.+++..+..|..+++|++|++++|.+.+..+..+.++++|+.|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            99999988777888888999999999999988777888888899999999999888766677888888999999998888


Q ss_pred             eecchhhhhcc
Q 025426          240 VMILNFLQFYS  250 (253)
Q Consensus       240 ~~~p~~~~~l~  250 (253)
                      +..+..|..++
T Consensus       190 ~~~~~~~~~l~  200 (477)
T 2id5_A          190 AIRDYSFKRLY  200 (477)
T ss_dssp             EECTTCSCSCT
T ss_pred             EeChhhcccCc
Confidence            88877766554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=3.5e-23  Score=180.20  Aligned_cols=171  Identities=23%  Similarity=0.273  Sum_probs=132.3

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF  158 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  158 (253)
                      ..++++.|++++|.+++..+..|..+++|+.|++++|.+....+..+..+++|++|++++|...+.++...|..+++|++
T Consensus       110 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~  189 (440)
T 3zyj_A          110 GLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRY  189 (440)
T ss_dssp             TCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCE
T ss_pred             CCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCe
Confidence            34678888888888886656667888888888888888876666677788888888888855444777766677888888


Q ss_pred             EEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426          159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       159 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      |++++|.++ .+| .+..+++|++|++++|.+++..|..+.++++|+.|++++|.+++..+..|..+++|+.|++++|++
T Consensus       190 L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  267 (440)
T 3zyj_A          190 LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL  267 (440)
T ss_dssp             EECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC
T ss_pred             ecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC
Confidence            888888887 444 367778888888888888877777888888888888888888877777788888888888888888


Q ss_pred             ceecchhhhhccc
Q 025426          239 QVMILNFLQFYSS  251 (253)
Q Consensus       239 ~~~~p~~~~~l~~  251 (253)
                      ++.++..|..+++
T Consensus       268 ~~~~~~~~~~l~~  280 (440)
T 3zyj_A          268 TLLPHDLFTPLHH  280 (440)
T ss_dssp             CCCCTTTTSSCTT
T ss_pred             CccChhHhccccC
Confidence            8877777766543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=5e-22  Score=162.28  Aligned_cols=167  Identities=23%  Similarity=0.281  Sum_probs=148.3

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ..+++.|+++++.+. .++ .+..+++|+.|++++|.+.+ . ..+..+++|++|++++|.++ .+++..+..+++|++|
T Consensus        40 l~~L~~L~l~~~~i~-~~~-~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  114 (272)
T 3rfs_A           40 LNSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKEL  114 (272)
T ss_dssp             HTTCCEEECTTSCCC-CCT-TGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEE
T ss_pred             ccceeeeeeCCCCcc-ccc-ccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCCEE
Confidence            357899999999987 333 47889999999999999985 3 47889999999999999998 7777766899999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      ++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+.|++++|+++
T Consensus       115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~  194 (272)
T 3rfs_A          115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK  194 (272)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred             ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence            99999999777777899999999999999999777777899999999999999999877888899999999999999999


Q ss_pred             eecchhhhhccc
Q 025426          240 VMILNFLQFYSS  251 (253)
Q Consensus       240 ~~~p~~~~~l~~  251 (253)
                      +.+|..+..+++
T Consensus       195 ~~~~~~~~~l~~  206 (272)
T 3rfs_A          195 SVPDGVFDRLTS  206 (272)
T ss_dssp             CCCTTTTTTCTT
T ss_pred             ccCHHHHhCCcC
Confidence            999988877654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=6.7e-22  Score=163.05  Aligned_cols=160  Identities=24%  Similarity=0.229  Sum_probs=127.2

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ..++.|++++|.+++..+..+..+++|+.|++++|.+++. +.. ..+++|++|++++|.+. .+|..+ ..+++|++|+
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~~L~Ls~N~l~-~l~~~~-~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLGTLDLSHNQLQ-SLPLLG-QTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCCEEECCSSCCS-SCCCCT-TTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCCEEECCCCcCC-cCchhh-ccCCCCCEEE
Confidence            5688888888888877777888888888888888888743 332 67788888888888887 777655 7788888888


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +++|.+++..+..|..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..|..+++|+.|++++|+++.
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~  186 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCc
Confidence            88888886666778888888888888888886666667788888888888888886666667888888888888888885


Q ss_pred             ecch
Q 025426          241 MILN  244 (253)
Q Consensus       241 ~~p~  244 (253)
                      +++.
T Consensus       187 ip~~  190 (290)
T 1p9a_G          187 IPKG  190 (290)
T ss_dssp             CCTT
T ss_pred             cChh
Confidence            5443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.1e-21  Score=159.97  Aligned_cols=162  Identities=22%  Similarity=0.306  Sum_probs=144.5

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF  158 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  158 (253)
                      ..++++.|++++|.++...+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.++ .+++..+..+++|++
T Consensus        59 ~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~  137 (270)
T 2o6q_A           59 RLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTY  137 (270)
T ss_dssp             SCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccC-eeCHHHhCcCcCCCE
Confidence            4578999999999999666666789999999999999999766677889999999999999998 777766689999999


Q ss_pred             EEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426          159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       159 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      |++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++
T Consensus       138 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          138 LSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             EECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            99999999966667789999999999999999977777789999999999999999977777899999999999999998


Q ss_pred             cee
Q 025426          239 QVM  241 (253)
Q Consensus       239 ~~~  241 (253)
                      ...
T Consensus       218 ~c~  220 (270)
T 2o6q_A          218 DCT  220 (270)
T ss_dssp             CCS
T ss_pred             eCC
Confidence            654

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.88  E-value=9.3e-22  Score=165.04  Aligned_cols=179  Identities=20%  Similarity=0.216  Sum_probs=116.8

Q ss_pred             CCCccceeeeC---------CCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEcc
Q 025426           67 PVCNWTGVACD---------VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLG  137 (253)
Q Consensus        67 ~~c~~~g~~c~---------~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  137 (253)
                      ..|.+..+.|.         ...++++.|++++|.+.+..+..+..+++|++|++++|.+++..|..+..+++|++|+++
T Consensus        31 c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           31 CHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             CcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            44678887775         123568899999999887777788889999999999999887778888888888888888


Q ss_pred             CCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcC---------------------------
Q 025426          138 KNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDF---------------------------  190 (253)
Q Consensus       138 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l---------------------------  190 (253)
                      +|.+. .+|..++   ++|++|++++|.+++..+..+..+++|++|++++|.+                           
T Consensus       111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~  186 (332)
T 2ft3_A          111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG  186 (332)
T ss_dssp             SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSS
T ss_pred             CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCc
Confidence            88887 6666442   5566666666665544344455555555555555544                           


Q ss_pred             -------------------cccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426          191 -------------------SGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       191 -------------------~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  250 (253)
                                         ++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|+++ .+|..+..++
T Consensus       187 l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~  264 (332)
T 2ft3_A          187 IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLK  264 (332)
T ss_dssp             CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCT
T ss_pred             cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCc
Confidence                               3333344445555555666666555544555556666666666666665 3444444443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=2.5e-22  Score=166.54  Aligned_cols=167  Identities=19%  Similarity=0.247  Sum_probs=113.0

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCC-hhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIP-STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ++++.|++++|.+. .++..+..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+ .++..+..+++|++|
T Consensus        78 ~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L  155 (306)
T 2z66_A           78 TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV-AFNGIFNGLSSLEVL  155 (306)
T ss_dssp             SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE-CSTTTTTTCTTCCEE
T ss_pred             cccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc-cchhhcccCcCCCEE
Confidence            45666777776665 345556667777777777777664333 456667777777777777763 333333667777777


Q ss_pred             EeecCcCCC-CCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426          160 SLSLNMFHG-GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       160 ~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      ++++|.+++ ..|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++
T Consensus       156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  235 (306)
T 2z66_A          156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI  235 (306)
T ss_dssp             ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred             ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence            777777764 4566677777777777777777766666777777777777777777765555677777777777777777


Q ss_pred             ceecchhhhhc
Q 025426          239 QVMILNFLQFY  249 (253)
Q Consensus       239 ~~~~p~~~~~l  249 (253)
                      ++.+|..+..+
T Consensus       236 ~~~~~~~~~~~  246 (306)
T 2z66_A          236 MTSKKQELQHF  246 (306)
T ss_dssp             CBCSSSSCCCC
T ss_pred             cccCHHHHHhh
Confidence            77766665554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.87  E-value=2.6e-21  Score=162.09  Aligned_cols=180  Identities=18%  Similarity=0.279  Sum_probs=109.5

Q ss_pred             CCCccceeeeC---------CCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEcc
Q 025426           67 PVCNWTGVACD---------VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLG  137 (253)
Q Consensus        67 ~~c~~~g~~c~---------~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  137 (253)
                      ..|.++.+.|.         ...+.++.|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|+++
T Consensus        29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            45677777775         123567888888888887666678888888888888888887778888888888888888


Q ss_pred             CCCCcCcCchhH---------------------hcCCCCccEEEeecCcCCC--CCCccCCCCCCcceEeeecCcCcccC
Q 025426          138 KNKLSGQIPTNI---------------------CSNLPFLEFLSLSLNMFHG--GIPSTLSNCTYLRTLSLAYNDFSGAV  194 (253)
Q Consensus       138 ~n~l~~~~~~~~---------------------~~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~  194 (253)
                      +|.++ .+|..+                     +..+++|++|++++|.++.  ..+..+..+++|++|++++|.++ .+
T Consensus       109 ~n~l~-~l~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l  186 (330)
T 1xku_A          109 KNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TI  186 (330)
T ss_dssp             SSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SC
T ss_pred             CCcCC-ccChhhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cC
Confidence            88776 555433                     3445555555555555432  33344444555555555444444 22


Q ss_pred             CccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426          195 PREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       195 p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  250 (253)
                      |..+.  ++|++|++++|.+++..+..+..+++|+.|++++|.+++.++..+..++
T Consensus       187 ~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  240 (330)
T 1xku_A          187 PQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP  240 (330)
T ss_dssp             CSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred             Ccccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence            22221  3455555555555544455555556666666666666555555554443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.87  E-value=6.8e-22  Score=161.61  Aligned_cols=168  Identities=20%  Similarity=0.193  Sum_probs=99.3

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      .++.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .++...+..+++|++|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEEC
Confidence            4666666666666555555666666666666666666544555666666666666666665 444333356666666666


Q ss_pred             ecCcCCCCCCccCCCCCCcceEeeecCcCccc-CCccccCCCCCCeeecccCcCcccCChhhcCC---------------
Q 025426          162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA-VPREIGNLTKLKVLYIGANRLQGEIPREFGNL---------------  225 (253)
Q Consensus       162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l---------------  225 (253)
                      ++|.+++..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.+++..+..+..+               
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n  187 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence            66666544444566666666666666666542 35566666666666666666654433333322               


Q ss_pred             ------------CCCCEEeccCCCCceecchhhhhcc
Q 025426          226 ------------TELEQFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       226 ------------~~L~~L~l~~n~l~~~~p~~~~~l~  250 (253)
                                  .+|+.|++++|.+++.++..|..++
T Consensus       188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~  224 (276)
T 2z62_A          188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLT  224 (276)
T ss_dssp             CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCC
T ss_pred             cccccCccccCCCcccEEECCCCceeecCHhHhcccc
Confidence                        2566666666666666665555544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.87  E-value=2.6e-21  Score=153.23  Aligned_cols=155  Identities=17%  Similarity=0.229  Sum_probs=131.3

Q ss_pred             EEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCC-hhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426           85 VLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIP-STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL  163 (253)
Q Consensus        85 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  163 (253)
                      .++++++.++ .+|..+.  ..++.|++++|.+++..+ ..+..+++|++|++++|.++ .+++..|..+++|++|++++
T Consensus        15 ~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             EeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCC
Confidence            6888888887 5666553  457899999999986644 45788999999999999998 66665568899999999999


Q ss_pred             CcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecc
Q 025426          164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMIL  243 (253)
Q Consensus       164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  243 (253)
                      |.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|.+++..|..|..+++|+.|++++|++....+
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            99987777788999999999999999998888889999999999999999998878899999999999999999875443

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.87  E-value=2e-21  Score=160.16  Aligned_cols=165  Identities=24%  Similarity=0.322  Sum_probs=147.4

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      .++++.+++++++++ .+|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.++ .++..  ..+++|++|
T Consensus         9 l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~--~~l~~L~~L   82 (290)
T 1p9a_G            9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQVD--GTLPVLGTL   82 (290)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEECC--SCCTTCCEE
T ss_pred             cCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccCC--CCCCcCCEE
Confidence            367899999999998 6676554  68999999999999878889999999999999999998 66653  678999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      ++++|.++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|+++
T Consensus        83 ~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  161 (290)
T 1p9a_G           83 DLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT  161 (290)
T ss_dssp             ECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             ECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCC
Confidence            99999998 77888899999999999999999777788999999999999999999877888999999999999999999


Q ss_pred             eecchhhhhccc
Q 025426          240 VMILNFLQFYSS  251 (253)
Q Consensus       240 ~~~p~~~~~l~~  251 (253)
                      +.++..|..+++
T Consensus       162 ~l~~~~~~~l~~  173 (290)
T 1p9a_G          162 ELPAGLLNGLEN  173 (290)
T ss_dssp             CCCTTTTTTCTT
T ss_pred             ccCHHHhcCcCC
Confidence            888887776654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.87  E-value=2.6e-21  Score=153.22  Aligned_cols=133  Identities=20%  Similarity=0.235  Sum_probs=64.8

Q ss_pred             CCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEe
Q 025426          105 SSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLS  184 (253)
Q Consensus       105 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  184 (253)
                      ++++.|++++|.+++..+..+..+++|++|++++|.++ .+++..|..+++|++|++++|.++...+..|..+++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            34555555555554333334444555555555555554 33222224455555555555555433333344455555555


Q ss_pred             eecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426          185 LAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       185 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      +++|.+++..|..+..+++|++|++++|.+++..+..|..+++|+.|++++|++
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            555555544444455555555555555555544444455555555555555544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.87  E-value=1.4e-21  Score=178.51  Aligned_cols=170  Identities=23%  Similarity=0.248  Sum_probs=154.8

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      +.+++.|++++|.+++..+..|..+++|++|++++|.+.+..|..+.++++|++|++++|.++ .+|+..|..+++|++|
T Consensus        24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-QLSDKTFAFCTNLTEL  102 (680)
T ss_dssp             CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-CCCTTTTTTCTTCSEE
T ss_pred             CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-ccChhhhccCCCCCEE
Confidence            357999999999999777778999999999999999999888999999999999999999998 8888766899999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhc--CCCCCCEEeccCCC
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFG--NLTELEQFSLPTNN  237 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~l~~n~  237 (253)
                      ++++|.+++..|..|..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+..+.  .+++|+.|++++|.
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  182 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ  182 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence            9999999877778899999999999999999988888899999999999999999977777664  56899999999999


Q ss_pred             Cceecchhhhhcc
Q 025426          238 LQVMILNFLQFYS  250 (253)
Q Consensus       238 l~~~~p~~~~~l~  250 (253)
                      +++.+|..+..++
T Consensus       183 l~~~~~~~~~~l~  195 (680)
T 1ziw_A          183 IKEFSPGCFHAIG  195 (680)
T ss_dssp             CCCBCTTGGGGSS
T ss_pred             ccccChhhhhhhh
Confidence            9999998887654

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.87  E-value=6.7e-22  Score=176.34  Aligned_cols=158  Identities=21%  Similarity=0.288  Sum_probs=133.2

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      +++++|++++|.+++..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|.+. .+++..+..+++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEE
Confidence            57999999999999888888999999999999999999877888999999999999999998 66666558999999999


Q ss_pred             eecCcCCC-CCCccCCCCCCcceEeeecCcCcccCC-ccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426          161 LSLNMFHG-GIPSTLSNCTYLRTLSLAYNDFSGAVP-REIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       161 l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      +++|.+++ ..|..+..+++|++|++++|.+.+.+| ..+.++++|++|++++|.+++..|..++.+++|+.|++++|.+
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~  184 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSES  184 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBS
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcc
Confidence            99999986 356778999999999999998443444 6788999999999999999887888777766666666665555


Q ss_pred             c
Q 025426          239 Q  239 (253)
Q Consensus       239 ~  239 (253)
                      .
T Consensus       185 ~  185 (549)
T 2z81_A          185 A  185 (549)
T ss_dssp             T
T ss_pred             c
Confidence            4

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.87  E-value=1.8e-21  Score=170.00  Aligned_cols=171  Identities=22%  Similarity=0.298  Sum_probs=135.0

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCc----------------
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS----------------  142 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~----------------  142 (253)
                      ..++++.|++++|.+.+..+..|.++++|+.|++++|.++...+..+..+++|++|++++|.+.                
T Consensus        97 ~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           97 HLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEE
Confidence            3456777777777777666666777777777777777776555555666667777777666665                


Q ss_pred             --------CcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcC
Q 025426          143 --------GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRL  214 (253)
Q Consensus       143 --------~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l  214 (253)
                              +.++...|..+++|++|++++|.+++ +| .+..+++|++|++++|.+++..|..+.++++|+.|++++|.+
T Consensus       177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l  254 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV  254 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCC
T ss_pred             eCCCCCCccccChhhccCCCCCCEEECCCCcccc-cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcC
Confidence                    12333345667788888888888874 34 478899999999999999988899999999999999999999


Q ss_pred             cccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426          215 QGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       215 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  251 (253)
                      ++..+..|..+++|+.|++++|++++.++..|..+++
T Consensus       255 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~  291 (452)
T 3zyi_A          255 SLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRY  291 (452)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTT
T ss_pred             ceECHHHhcCCCCCCEEECCCCcCCccChHHhccccC
Confidence            9888999999999999999999999999888877654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.87  E-value=8.1e-22  Score=157.89  Aligned_cols=166  Identities=18%  Similarity=0.254  Sum_probs=84.0

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCC-CCCcCChhhhccCCCCEEEccC-CCCcCcCchhHhcCCCCccEE
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNR-LSGSIPSTIFTIYTLKNVSLGK-NKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      +++.|++++|++++..+..|..+++|+.|++++|. ++...+..+..+++|++|++++ |.++ .+++..|..+++|++|
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~L  110 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKFL  110 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCEE
Confidence            45555555555554444445555555555555554 4433333444555555555554 5554 4444333445555555


Q ss_pred             EeecCc--------------------------CCCCCCccCCCCCCcc-eEeeecCcCcccCCccccCCCCCCeeecccC
Q 025426          160 SLSLNM--------------------------FHGGIPSTLSNCTYLR-TLSLAYNDFSGAVPREIGNLTKLKVLYIGAN  212 (253)
Q Consensus       160 ~l~~n~--------------------------~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n  212 (253)
                      ++++|.                          +++..+..|..+++|+ +|++++|.++ .+|......++|+.|++++|
T Consensus       111 ~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n  189 (239)
T 2xwt_C          111 GIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKN  189 (239)
T ss_dssp             EEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTC
T ss_pred             eCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCC
Confidence            555554                          4433333455555555 5555555555 23322222255556666666


Q ss_pred             c-CcccCChhhcCC-CCCCEEeccCCCCceecchhhhhc
Q 025426          213 R-LQGEIPREFGNL-TELEQFSLPTNNLQVMILNFLQFY  249 (253)
Q Consensus       213 ~-l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~p~~~~~l  249 (253)
                      + +++..+..|..+ ++|+.|++++|++++.++..+..+
T Consensus       190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L  228 (239)
T 2xwt_C          190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHL  228 (239)
T ss_dssp             TTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTC
T ss_pred             CCcccCCHHHhhccccCCcEEECCCCccccCChhHhccC
Confidence            3 554444555566 666666666666665555544444

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.87  E-value=1.7e-21  Score=175.67  Aligned_cols=168  Identities=19%  Similarity=0.075  Sum_probs=151.0

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      +..++.|++++|.+++..+..|..+++|++|++++|.+.+..|..|..+++|++|++++|.+.+..|.. +..+++|++|
T Consensus        32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~-~~~l~~L~~L  110 (606)
T 3t6q_A           32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETA-LSGPKALKHL  110 (606)
T ss_dssp             CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTT-TSSCTTCCEE
T ss_pred             CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhh-hcccccccEe
Confidence            457899999999999888999999999999999999999888999999999999999999998444544 4899999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCC--EEeccCCC
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELE--QFSLPTNN  237 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~--~L~l~~n~  237 (253)
                      ++++|.+++..+..+..+++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+  .|++++|.
T Consensus       111 ~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~  190 (606)
T 3t6q_A          111 FFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND  190 (606)
T ss_dssp             ECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred             eccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence            9999999976678899999999999999999975545555699999999999999988889999999999  99999999


Q ss_pred             Cceecchhhhh
Q 025426          238 LQVMILNFLQF  248 (253)
Q Consensus       238 l~~~~p~~~~~  248 (253)
                      +++.+|..+..
T Consensus       191 l~~~~~~~~~~  201 (606)
T 3t6q_A          191 IAGIEPGAFDS  201 (606)
T ss_dssp             CCEECTTTTTT
T ss_pred             cCccChhHhhh
Confidence            99999987754

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=2.2e-21  Score=169.17  Aligned_cols=90  Identities=18%  Similarity=0.253  Sum_probs=52.7

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChh--hhccCCCCEEEccCCCCcCcCchhHhcCCCCcc
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPST--IFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLE  157 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  157 (253)
                      .+++++|++++|.+.+..|..+..+++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..|..++..+++|+
T Consensus        78 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~  157 (455)
T 3v47_A           78 LSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFH  157 (455)
T ss_dssp             CTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCC
T ss_pred             cccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCccc
Confidence            345666666666666555666666666666666666665433333  555666666666666665433444345556666


Q ss_pred             EEEeecCcCCCC
Q 025426          158 FLSLSLNMFHGG  169 (253)
Q Consensus       158 ~L~l~~n~~~~~  169 (253)
                      +|++++|.+++.
T Consensus       158 ~L~L~~n~l~~~  169 (455)
T 3v47_A          158 VLDLTFNKVKSI  169 (455)
T ss_dssp             EEECTTCCBSCC
T ss_pred             EEeCCCCccccc
Confidence            666665555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.86  E-value=1.4e-21  Score=176.45  Aligned_cols=169  Identities=18%  Similarity=0.159  Sum_probs=144.6

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      +..+++|||++|.|++..+..|.++++|++|++++|.+++..+.+|.++++|++|++++|+++ .+|+..|.++.+|++|
T Consensus        51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-~l~~~~f~~L~~L~~L  129 (635)
T 4g8a_A           51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  129 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECGGGGTTCTTCCEE
T ss_pred             CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-CCCHHHhcCCCCCCEE
Confidence            357899999999999777788999999999999999999777778999999999999999998 8888877999999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcc-cCCccccCCCCCCeeecccCcCcccCChhhcCCCC----CCEEecc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG-AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTE----LEQFSLP  234 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~----L~~L~l~  234 (253)
                      ++++|.+++..+..|+++++|++|++++|.+++ ..|..+..+++|++|++++|++++..+..+..+.+    ...++++
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls  209 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  209 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcc
Confidence            999999987666789999999999999999875 35778888999999999999998877777765443    3478899


Q ss_pred             CCCCceecchhhhhc
Q 025426          235 TNNLQVMILNFLQFY  249 (253)
Q Consensus       235 ~n~l~~~~p~~~~~l  249 (253)
                      .|.++...+..+..+
T Consensus       210 ~n~l~~i~~~~~~~~  224 (635)
T 4g8a_A          210 LNPMNFIQPGAFKEI  224 (635)
T ss_dssp             TCCCCEECTTTTTTC
T ss_pred             cCcccccCcccccch
Confidence            999988877665543

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.86  E-value=1.7e-21  Score=175.65  Aligned_cols=112  Identities=25%  Similarity=0.307  Sum_probs=92.3

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ++++.|++++|.+.+..+..|..+++|+.|++++|.+.+..|..+..+++|++|++++|.++ .+|+.+|..+++|++|+
T Consensus        75 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~  153 (597)
T 3oja_B           75 RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLS  153 (597)
T ss_dssp             CCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEE
Confidence            46778888888888777778888888888888888888777777788888888888888888 77777777888888888


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCccc
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA  193 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  193 (253)
                      +++|.+++..|..|..+++|++|++++|.+++.
T Consensus       154 Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  186 (597)
T 3oja_B          154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  186 (597)
T ss_dssp             CCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC
T ss_pred             eeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc
Confidence            888888877777788888888888888887743

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.86  E-value=1.5e-22  Score=171.17  Aligned_cols=166  Identities=17%  Similarity=0.205  Sum_probs=144.8

Q ss_pred             CCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCch-hHhcCCCCc
Q 025426           78 VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPT-NICSNLPFL  156 (253)
Q Consensus        78 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~-~~~~~l~~L  156 (253)
                      ...++++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|. ..+..+++|
T Consensus        73 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L  151 (353)
T 2z80_A           73 QRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKL  151 (353)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTC
T ss_pred             ccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCC
Confidence            34578999999999999888888999999999999999999655555889999999999999998 7777 556889999


Q ss_pred             cEEEeecC-cCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccC
Q 025426          157 EFLSLSLN-MFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPT  235 (253)
Q Consensus       157 ~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  235 (253)
                      ++|++++| .++...+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+....+..+..+++|+.|++++
T Consensus       152 ~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~  231 (353)
T 2z80_A          152 QILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRD  231 (353)
T ss_dssp             CEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEES
T ss_pred             cEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCC
Confidence            99999999 47656678899999999999999999988899999999999999999999744444456789999999999


Q ss_pred             CCCceecch
Q 025426          236 NNLQVMILN  244 (253)
Q Consensus       236 n~l~~~~p~  244 (253)
                      |.+++..+.
T Consensus       232 n~l~~~~~~  240 (353)
T 2z80_A          232 TDLDTFHFS  240 (353)
T ss_dssp             CBCTTCCCC
T ss_pred             Ccccccccc
Confidence            999886543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.86  E-value=2.9e-21  Score=152.97  Aligned_cols=149  Identities=19%  Similarity=0.274  Sum_probs=133.7

Q ss_pred             CCCccceeeeC---------CCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEcc
Q 025426           67 PVCNWTGVACD---------VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLG  137 (253)
Q Consensus        67 ~~c~~~g~~c~---------~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  137 (253)
                      ..|.+..+.|.         ..+..++.|++++|.+++..+..|..+++|+.|++++|.+.+..|..+..+++|++|+++
T Consensus         9 C~C~~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls   88 (220)
T 2v9t_B            9 CTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLY   88 (220)
T ss_dssp             SEEETTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECC
T ss_pred             CEECCCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECC
Confidence            44666666665         123578999999999998778789999999999999999998889999999999999999


Q ss_pred             CCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc
Q 025426          138 KNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG  216 (253)
Q Consensus       138 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  216 (253)
                      +|.++ .+|+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++..
T Consensus        89 ~N~l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           89 GNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CCcCC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            99999 8998888999999999999999998888999999999999999999998777789999999999999999863

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=1.4e-21  Score=159.81  Aligned_cols=163  Identities=21%  Similarity=0.236  Sum_probs=118.2

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      .++++.|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++|++|
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L  129 (276)
T 2z62_A           51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKEL  129 (276)
T ss_dssp             CTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCC-CSTTCCCTTCTTCCEE
T ss_pred             ccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCCcc-ccCchhcccCCCCCEE
Confidence            456777788877777666666777777777777777777666666777777777777777776 4444334667777777


Q ss_pred             EeecCcCCCC-CCccCCCCCCcceEeeecCcCcccCCccc---------------------------cCCCCCCeeeccc
Q 025426          160 SLSLNMFHGG-IPSTLSNCTYLRTLSLAYNDFSGAVPREI---------------------------GNLTKLKVLYIGA  211 (253)
Q Consensus       160 ~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~~l---------------------------~~l~~L~~L~l~~  211 (253)
                      ++++|.+++. +|..+..+++|++|++++|++++..+..+                           ....+|++|++++
T Consensus       130 ~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~  209 (276)
T 2z62_A          130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDT  209 (276)
T ss_dssp             ECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCS
T ss_pred             ECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCC
Confidence            7777777643 46667777777777777777664333222                           2223788999999


Q ss_pred             CcCcccCChhhcCCCCCCEEeccCCCCceecc
Q 025426          212 NRLQGEIPREFGNLTELEQFSLPTNNLQVMIL  243 (253)
Q Consensus       212 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  243 (253)
                      |.+++..+..+..+++|+.|++++|++....|
T Consensus       210 n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          210 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             SCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             CceeecCHhHhcccccccEEEccCCcccccCC
Confidence            99987767778999999999999999997765

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.86  E-value=2.9e-21  Score=168.37  Aligned_cols=99  Identities=26%  Similarity=0.250  Sum_probs=49.1

Q ss_pred             cCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCE
Q 025426          151 SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQ  230 (253)
Q Consensus       151 ~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  230 (253)
                      ..+++|++|++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+..+++|++
T Consensus       296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  375 (455)
T 3v47_A          296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE  375 (455)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence            33444444555555444444444444555555555555554444444455555555555555555444455555555555


Q ss_pred             EeccCCCCceecchhhhhc
Q 025426          231 FSLPTNNLQVMILNFLQFY  249 (253)
Q Consensus       231 L~l~~n~l~~~~p~~~~~l  249 (253)
                      |++++|++++.++..++.+
T Consensus       376 L~L~~N~l~~~~~~~~~~l  394 (455)
T 3v47_A          376 LALDTNQLKSVPDGIFDRL  394 (455)
T ss_dssp             EECCSSCCSCCCTTTTTTC
T ss_pred             EECCCCccccCCHhHhccC
Confidence            5555555555444444433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.86  E-value=1.3e-21  Score=166.07  Aligned_cols=157  Identities=25%  Similarity=0.242  Sum_probs=102.9

Q ss_pred             eEEEEEeCCCCccccCCccCC-CCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           82 RVTVLNISSLNLRGTIPSQLG-NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      .++.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..|..+++|++|++++|.++ .+++..|..+++|++|+
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEE
Confidence            456677777777765555565 6777777777777776555566677777777777777776 55555556677777777


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccc---cCCCCCCeeecccCcCcccCChhhcCCCC--CCEEeccC
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI---GNLTKLKVLYIGANRLQGEIPREFGNLTE--LEQFSLPT  235 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~l~~n~l~~~~~~~~~~l~~--L~~L~l~~  235 (253)
                      +++|.+++..+..|..+++|++|++++|.+++..+..+   ..+++|+.|+|++|.+++..+..+..++.  ++.|++++
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~  198 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN  198 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCS
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecC
Confidence            77777765556667777777777777777764333333   45667777777777776544455666655  36677777


Q ss_pred             CCCc
Q 025426          236 NNLQ  239 (253)
Q Consensus       236 n~l~  239 (253)
                      |++.
T Consensus       199 N~~~  202 (361)
T 2xot_A          199 NPLE  202 (361)
T ss_dssp             SCEE
T ss_pred             CCcc
Confidence            7664

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.86  E-value=1.9e-20  Score=146.76  Aligned_cols=157  Identities=24%  Similarity=0.284  Sum_probs=138.0

Q ss_pred             EEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426           83 VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS  162 (253)
Q Consensus        83 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  162 (253)
                      -+.++.++++++ .+|..+  .++|+.|++++|.+++..+..+..+++|++|++++|.++ .++...|..+++|++|+++
T Consensus         9 ~~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls   84 (208)
T 2o6s_A            9 GTTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLS   84 (208)
T ss_dssp             TTEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC-ccChhhcCCCCCcCEEECC
Confidence            357888888887 556544  368999999999999766667889999999999999998 7888777899999999999


Q ss_pred             cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceec
Q 025426          163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI  242 (253)
Q Consensus       163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  242 (253)
                      +|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..
T Consensus        85 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  164 (208)
T 2o6s_A           85 TNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC  164 (208)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCT
T ss_pred             CCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCC
Confidence            99999666677899999999999999999777777899999999999999999777777999999999999999998876


Q ss_pred             c
Q 025426          243 L  243 (253)
Q Consensus       243 p  243 (253)
                      |
T Consensus       165 ~  165 (208)
T 2o6s_A          165 P  165 (208)
T ss_dssp             T
T ss_pred             C
Confidence            6

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=1.4e-20  Score=161.14  Aligned_cols=113  Identities=25%  Similarity=0.296  Sum_probs=95.6

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      .++++.|++++|.+++..+..+..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .+|..+|..+++|++|
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L  146 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTL  146 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEE
Confidence            357888999999888777778888899999999999988777777888999999999999988 8888777888899999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCccc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA  193 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  193 (253)
                      ++++|.+++..+..+..+++|++|++++|.+++.
T Consensus       147 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  180 (390)
T 3o6n_A          147 SMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV  180 (390)
T ss_dssp             ECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC
T ss_pred             ECCCCccCccChhhccCCCCCCEEECCCCcCCcc
Confidence            9999998877777788888888888888887643

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=4.9e-21  Score=172.74  Aligned_cols=167  Identities=23%  Similarity=0.251  Sum_probs=74.1

Q ss_pred             eEEEEEeCCCCccccC--CccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           82 RVTVLNISSLNLRGTI--PSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      +++.|++++|.+.+..  +..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+...+..+++|++|
T Consensus       351 ~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  430 (606)
T 3t6q_A          351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL  430 (606)
T ss_dssp             TCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEE
T ss_pred             cCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEE
Confidence            3444444444444322  33344444455555554444444444444444455555555444433333323444444445


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCccc---CCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCC
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA---VPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN  236 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~---~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  236 (253)
                      ++++|.+++..|..+..+++|++|++++|.+.+.   .+..+..+++|++|++++|.+++..|..+..+++|+.|++++|
T Consensus       431 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHN  510 (606)
T ss_dssp             ECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             ECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCC
Confidence            5544444444444444444444444444444331   1123344444444444444444444444444444444444444


Q ss_pred             CCceecchhhhh
Q 025426          237 NLQVMILNFLQF  248 (253)
Q Consensus       237 ~l~~~~p~~~~~  248 (253)
                      ++++.+|..+..
T Consensus       511 ~l~~~~~~~l~~  522 (606)
T 3t6q_A          511 RLTSSSIEALSH  522 (606)
T ss_dssp             CCCGGGGGGGTT
T ss_pred             ccCcCChhHhCc
Confidence            444444444443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.85  E-value=3.6e-21  Score=173.63  Aligned_cols=168  Identities=20%  Similarity=0.148  Sum_probs=142.2

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      +.+++.|++++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+++..+..+++|++|
T Consensus        31 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~~L  109 (606)
T 3vq2_A           31 PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQ-SFSPGSFSGLTSLENL  109 (606)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-CCCTTSSTTCTTCCEE
T ss_pred             CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCccc-ccChhhcCCcccCCEE
Confidence            457899999999999888888999999999999999999777888999999999999999998 5533334889999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcc-cCCccccCCCCCCeeecccCcCcccCChhhcCCCCCC----EEecc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG-AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELE----QFSLP  234 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~l~  234 (253)
                      ++++|.+++..+..+..+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+++|+    .|+++
T Consensus       110 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~  189 (606)
T 3vq2_A          110 VAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS  189 (606)
T ss_dssp             ECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred             EccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence            999999987776789999999999999999986 5688999999999999999999887777776665544    78888


Q ss_pred             CCCCceecchhhhh
Q 025426          235 TNNLQVMILNFLQF  248 (253)
Q Consensus       235 ~n~l~~~~p~~~~~  248 (253)
                      +|.+++.++..+..
T Consensus       190 ~n~l~~~~~~~~~~  203 (606)
T 3vq2_A          190 LNPIDFIQDQAFQG  203 (606)
T ss_dssp             TCCCCEECTTTTTT
T ss_pred             CCCcceeCcccccC
Confidence            88888777766553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=2.1e-21  Score=155.42  Aligned_cols=149  Identities=21%  Similarity=0.280  Sum_probs=104.3

Q ss_pred             CeEEEEEeCC-CCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCC---EEEccCC-CCcCcCchhHhcCCCC
Q 025426           81 HRVTVLNISS-LNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLK---NVSLGKN-KLSGQIPTNICSNLPF  155 (253)
Q Consensus        81 ~~l~~L~l~~-~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~~~~~l~~  155 (253)
                      ++++.|++++ |.+++..+..|..+++|+.|++++|.+++ +|. +..+++|+   +|++++| .++ .+++..|..+++
T Consensus        80 ~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~l~~  156 (239)
T 2xwt_C           80 SKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMT-SIPVNAFQGLCN  156 (239)
T ss_dssp             TTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCC-EECTTTTTTTBS
T ss_pred             cCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchh-hcCcccccchhc
Confidence            3445555554 55544444444555555555555555542 333 44555555   6666666 666 666666688999


Q ss_pred             cc-EEEeecCcCCCCCC-ccCCCCCCcceEeeecCc-CcccCCccccCC-CCCCeeecccCcCcccCChhhcCCCCCCEE
Q 025426          156 LE-FLSLSLNMFHGGIP-STLSNCTYLRTLSLAYND-FSGAVPREIGNL-TKLKVLYIGANRLQGEIPREFGNLTELEQF  231 (253)
Q Consensus       156 L~-~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  231 (253)
                      |+ +|++++|.++ .+| ..+.. ++|++|++++|+ +++..+..+..+ ++|+.|++++|++++ +|..  .+++|+.|
T Consensus       157 L~~~L~l~~n~l~-~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L  231 (239)
T 2xwt_C          157 ETLTLKLYNNGFT-SVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKEL  231 (239)
T ss_dssp             SEEEEECCSCCCC-EECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEE
T ss_pred             ceeEEEcCCCCCc-ccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCcee
Confidence            99 9999999998 455 44555 899999999995 987767788999 999999999999984 4443  67889999


Q ss_pred             eccCCC
Q 025426          232 SLPTNN  237 (253)
Q Consensus       232 ~l~~n~  237 (253)
                      +++++.
T Consensus       232 ~l~~~~  237 (239)
T 2xwt_C          232 IARNTW  237 (239)
T ss_dssp             ECTTC-
T ss_pred             eccCcc
Confidence            998763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.85  E-value=1.1e-20  Score=160.40  Aligned_cols=163  Identities=25%  Similarity=0.271  Sum_probs=141.0

Q ss_pred             EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhh-ccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426           84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIF-TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS  162 (253)
Q Consensus        84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  162 (253)
                      +.+++++++++ .+|..+.  ..++.|++++|.+++..+..+. .+++|++|++++|.++ .+++..|..+++|++|+++
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence            36788888888 5676554  4689999999999977777777 8999999999999998 7776666899999999999


Q ss_pred             cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhh---cCCCCCCEEeccCCCCc
Q 025426          163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREF---GNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~  239 (253)
                      +|.++...+..|..+++|++|++++|.+++..+..+.++++|+.|+|++|.+++..+..|   ..+++|+.|++++|+++
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            999997777789999999999999999998888999999999999999999996555555   67999999999999999


Q ss_pred             eecchhhhhcc
Q 025426          240 VMILNFLQFYS  250 (253)
Q Consensus       240 ~~~p~~~~~l~  250 (253)
                      +.++..+..++
T Consensus       177 ~l~~~~~~~l~  187 (361)
T 2xot_A          177 KLPLTDLQKLP  187 (361)
T ss_dssp             CCCHHHHHHSC
T ss_pred             ccCHHHhhhcc
Confidence            98888887765

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.85  E-value=1e-20  Score=170.79  Aligned_cols=161  Identities=26%  Similarity=0.337  Sum_probs=142.1

Q ss_pred             EeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcC
Q 025426           87 NISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMF  166 (253)
Q Consensus        87 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~  166 (253)
                      +-++.+++ .+|..+.  .++++|++++|.+++..+..|..+++|++|++++|.++ .+++..|.++++|++|++++|++
T Consensus        37 ~c~~~~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l  112 (635)
T 4g8a_A           37 QCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI  112 (635)
T ss_dssp             ECTTSCCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCC
T ss_pred             ECCCCCcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcC
Confidence            44455566 6776654  47999999999999777788999999999999999998 88888779999999999999999


Q ss_pred             CCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEeccCCCCceecchh
Q 025426          167 HGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG-EIPREFGNLTELEQFSLPTNNLQVMILNF  245 (253)
Q Consensus       167 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~p~~  245 (253)
                      ++..+..|.++++|++|++++|++++..+..++++++|++|++++|.+++ ..|..++.+++|++|++++|++++.+|..
T Consensus       113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  192 (635)
T 4g8a_A          113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD  192 (635)
T ss_dssp             CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred             CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence            96666789999999999999999997777789999999999999999976 46888999999999999999999999999


Q ss_pred             hhhccc
Q 025426          246 LQFYSS  251 (253)
Q Consensus       246 ~~~l~~  251 (253)
                      ++.+.+
T Consensus       193 l~~L~~  198 (635)
T 4g8a_A          193 LRVLHQ  198 (635)
T ss_dssp             GHHHHT
T ss_pred             ccchhh
Confidence            887653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=1.3e-20  Score=169.89  Aligned_cols=133  Identities=20%  Similarity=0.274  Sum_probs=77.3

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      +++.++++++.+....+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+. .+++..|..+++|++|++
T Consensus        52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  130 (597)
T 3oja_B           52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVL  130 (597)
T ss_dssp             CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCEEEe
Confidence            4455666666655444444455666666666666666555555666666666666666665 444444455666666666


Q ss_pred             ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCc
Q 025426          162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQ  215 (253)
Q Consensus       162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  215 (253)
                      ++|.+++..+..|..+++|++|++++|.+++..|..+..+++|++|++++|.++
T Consensus       131 ~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  184 (597)
T 3oja_B          131 ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT  184 (597)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCS
T ss_pred             eCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCC
Confidence            666665433344556666666666666666555555555666666666555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.85  E-value=8.8e-21  Score=169.68  Aligned_cols=168  Identities=18%  Similarity=0.173  Sum_probs=151.0

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      +..++.|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+++..|..+++|++|
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKL  105 (570)
T ss_dssp             CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEE
T ss_pred             cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCccccccc
Confidence            357899999999999888889999999999999999999777888999999999999999998 6666556899999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcc-cCCccccCCCCCCeeecccCcCcccCChhhcCCCCC----CEEecc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG-AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL----EQFSLP  234 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L----~~L~l~  234 (253)
                      ++++|.+++..+..+..+++|++|++++|.+++ .+|..+.++++|++|++++|.+++..+..++.+++|    ..++++
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence            999999986655679999999999999999986 468999999999999999999998878888888888    899999


Q ss_pred             CCCCceecchhhhh
Q 025426          235 TNNLQVMILNFLQF  248 (253)
Q Consensus       235 ~n~l~~~~p~~~~~  248 (253)
                      +|.+++.+|..+..
T Consensus       186 ~n~l~~~~~~~~~~  199 (570)
T 2z63_A          186 LNPMNFIQPGAFKE  199 (570)
T ss_dssp             TCCCCEECTTTTTT
T ss_pred             CCCceecCHHHhcc
Confidence            99999998887764

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=3.4e-20  Score=155.46  Aligned_cols=166  Identities=22%  Similarity=0.254  Sum_probs=122.9

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCC---
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPF---  155 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~---  155 (253)
                      ..++++.|++++|.+++..+..+..+++|++|++++|.+. .+|..+.  ++|++|++++|.+. .++...+..+++   
T Consensus        76 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~  151 (332)
T 2ft3_A           76 GLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNC  151 (332)
T ss_dssp             TCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCE
T ss_pred             CCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCE
Confidence            4567888888888888777777888888888888887776 3443322  44555555555444 333333333444   


Q ss_pred             -------------------------------------------ccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcc
Q 025426          156 -------------------------------------------LEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG  192 (253)
Q Consensus       156 -------------------------------------------L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  192 (253)
                                                                 |++|++++|.+++..+..+..+++|++|++++|.+++
T Consensus       152 L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~  231 (332)
T 2ft3_A          152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRM  231 (332)
T ss_dssp             EECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCC
T ss_pred             EECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCc
Confidence                                                       4444444555544445667888999999999999998


Q ss_pred             cCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhc
Q 025426          193 AVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFY  249 (253)
Q Consensus       193 ~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  249 (253)
                      ..+..+..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..|...
T Consensus       232 ~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~  287 (332)
T 2ft3_A          232 IENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPV  287 (332)
T ss_dssp             CCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCS
T ss_pred             CChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcccc
Confidence            87888999999999999999998 788889999999999999999999988877654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=2.6e-20  Score=163.49  Aligned_cols=170  Identities=20%  Similarity=0.197  Sum_probs=87.7

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcC-----------------
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG-----------------  143 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~-----------------  143 (253)
                      ++++.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+                 
T Consensus        80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  159 (477)
T 2id5_A           80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTL  159 (477)
T ss_dssp             TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEE
T ss_pred             ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEEC
Confidence            456666666666654434445555555555555555554444444444555555554444441                 


Q ss_pred             ------cCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecC------------------------cCccc
Q 025426          144 ------QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYN------------------------DFSGA  193 (253)
Q Consensus       144 ------~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n------------------------~l~~~  193 (253)
                            .++...+..+++|+.|++++|.+++..+..|..+++|++|++++|                        .+++.
T Consensus       160 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~  239 (477)
T 2id5_A          160 EKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAV  239 (477)
T ss_dssp             ESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSC
T ss_pred             CCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCccccc
Confidence                  334333344555555555555554333334444444444444433                        33321


Q ss_pred             CCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426          194 VPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       194 ~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  250 (253)
                      .+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++++..|..|.+++
T Consensus       240 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  296 (477)
T 2id5_A          240 PYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLN  296 (477)
T ss_dssp             CHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCT
T ss_pred             CHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcc
Confidence            113344555666666666666555555566666666666666666666666655544

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.84  E-value=1.9e-20  Score=148.25  Aligned_cols=136  Identities=18%  Similarity=0.208  Sum_probs=123.9

Q ss_pred             CeEEEEEeCCCCccccCC-ccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           81 HRVTVLNISSLNLRGTIP-SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ..++.|++++|.+++..+ ..|..+++|+.|++++|.+++..+..+..+++|++|++++|.++ .+++..|..+++|++|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCEE
Confidence            457899999999997755 45789999999999999999777778999999999999999998 7777766899999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCccc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGE  217 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~  217 (253)
                      ++++|.+++..|..|..+++|++|++++|.+++..|..+..+++|++|++++|++...
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            9999999988889999999999999999999988899999999999999999998753

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=3.2e-20  Score=167.43  Aligned_cols=163  Identities=25%  Similarity=0.310  Sum_probs=147.0

Q ss_pred             EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426           84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL  163 (253)
Q Consensus        84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  163 (253)
                      +.++.++++++ .+|..+.  ++++.|++++|.+++..+..+.++++|++|++++|.++ .+++..|..+++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~i~~~~~~~l~~L~~L~Ls~   89 (606)
T 3vq2_A           14 ITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-TIEDKAWHGLHHLSNLILTG   89 (606)
T ss_dssp             TEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred             CceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-ccCHHHhhchhhcCEeECCC
Confidence            36888898888 6776554  78999999999999877889999999999999999998 66555558999999999999


Q ss_pred             CcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc-cCChhhcCCCCCCEEeccCCCCceec
Q 025426          164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG-EIPREFGNLTELEQFSLPTNNLQVMI  242 (253)
Q Consensus       164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~  242 (253)
                      |.+++..|..|.++++|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..++.+++|+.|++++|.+++.+
T Consensus        90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~  169 (606)
T 3vq2_A           90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTIT  169 (606)
T ss_dssp             CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEEC
T ss_pred             CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecC
Confidence            99998889999999999999999999997777889999999999999999986 57999999999999999999999999


Q ss_pred             chhhhhcc
Q 025426          243 LNFLQFYS  250 (253)
Q Consensus       243 p~~~~~l~  250 (253)
                      |..++.++
T Consensus       170 ~~~~~~l~  177 (606)
T 3vq2_A          170 VNDLQFLR  177 (606)
T ss_dssp             TTTTHHHH
T ss_pred             hhhhhhhh
Confidence            98887765

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=1.4e-20  Score=157.62  Aligned_cols=142  Identities=20%  Similarity=0.279  Sum_probs=98.6

Q ss_pred             CCCCCCCCEEECCCCCCCC--cCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCC
Q 025426          101 LGNLSSLQSLNLSCNRLSG--SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCT  178 (253)
Q Consensus       101 ~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~  178 (253)
                      +..+++|+.|++++|.+..  ..+..+..+++|++|++++|.++ .+|..+   .++|++|++++|.+++..+..+..++
T Consensus       141 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~  216 (330)
T 1xku_A          141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLN  216 (330)
T ss_dssp             HTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC---CTTCSEEECTTSCCCEECTGGGTTCT
T ss_pred             hcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccc---cccCCEEECCCCcCCccCHHHhcCCC
Confidence            4455555555555555532  34455556666666666666665 555543   25677777777777666667777788


Q ss_pred             CcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhh
Q 025426          179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ  247 (253)
Q Consensus       179 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~  247 (253)
                      +|++|++++|.+++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.
T Consensus       217 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~  284 (330)
T 1xku_A          217 NLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC  284 (330)
T ss_dssp             TCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred             CCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcC
Confidence            8888888888887666667777888888888888877 6677788888888888888888877776654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.84  E-value=2.7e-20  Score=164.97  Aligned_cols=162  Identities=24%  Similarity=0.302  Sum_probs=138.0

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCC--cCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCc
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG--SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL  156 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  156 (253)
                      ..++++.|++++|.+.+..|..+..+++|+.|++++|.+.+  .+|..+..+++|++|++++|.+.+.+|...+..+++|
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccC
Confidence            45778999999999998888889999999999999999985  4567788899999999999999865888766888999


Q ss_pred             cEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCC
Q 025426          157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTN  236 (253)
Q Consensus       157 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  236 (253)
                      ++|++++|.+++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|
T Consensus       402 ~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N  478 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN  478 (520)
T ss_dssp             CEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCC
Confidence            9999999999877776554  78999999999998 78888889999999999999998433334889999999999999


Q ss_pred             CCceecc
Q 025426          237 NLQVMIL  243 (253)
Q Consensus       237 ~l~~~~p  243 (253)
                      +++...+
T Consensus       479 ~~~c~c~  485 (520)
T 2z7x_B          479 PWDCSCP  485 (520)
T ss_dssp             CBCCCHH
T ss_pred             CCcccCC
Confidence            9987544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.84  E-value=1.9e-21  Score=176.57  Aligned_cols=164  Identities=22%  Similarity=0.385  Sum_probs=127.3

Q ss_pred             CCCeEEEEEeCCCCcccc-----------------CCccCC--CCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCC
Q 025426           79 HSHRVTVLNISSLNLRGT-----------------IPSQLG--NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN  139 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~-----------------~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  139 (253)
                      ..++++.|++++|.+++.                 +|..+.  .+++|++|++++|.+.+.+|..+.++++|++|++++|
T Consensus       204 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n  283 (636)
T 4eco_A          204 RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACN  283 (636)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTC
T ss_pred             cccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCC
Confidence            456788888888888875                 888888  8888888888888888888888888888888888888


Q ss_pred             C-CcC-cCchhHhcCC------CCccEEEeecCcCCCCCCc--cCCCCCCcceEeeecCcCcccCCccccCCCCCCeeec
Q 025426          140 K-LSG-QIPTNICSNL------PFLEFLSLSLNMFHGGIPS--TLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYI  209 (253)
Q Consensus       140 ~-l~~-~~~~~~~~~l------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  209 (253)
                      . ++| .+|..+ ..+      ++|++|++++|.++ .+|.  .+..+++|++|++++|.++|.+| .+..+++|++|++
T Consensus       284 ~~l~~~~lp~~~-~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L  360 (636)
T 4eco_A          284 RGISGEQLKDDW-QALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNL  360 (636)
T ss_dssp             TTSCHHHHHHHH-HHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEEC
T ss_pred             CCCccccchHHH-HhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEEC
Confidence            7 876 677766 444      78888888888887 6777  78888888888888888887777 6777777777777


Q ss_pred             ccCcCcccCChhhcCCCC-CCEEeccCCCCceecchhhh
Q 025426          210 GANRLQGEIPREFGNLTE-LEQFSLPTNNLQVMILNFLQ  247 (253)
Q Consensus       210 ~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~  247 (253)
                      ++|.++ .+|..+..+++ |+.|++++|.++ .+|..+.
T Consensus       361 ~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~  397 (636)
T 4eco_A          361 AYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFD  397 (636)
T ss_dssp             CSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCC
T ss_pred             CCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhh
Confidence            777776 66666777776 777777777776 4454443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=1.2e-20  Score=157.09  Aligned_cols=155  Identities=23%  Similarity=0.288  Sum_probs=86.8

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCc--CChhh--hccCCCCEEEccCCCCcC--cCchhHhcCCC
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGS--IPSTI--FTIYTLKNVSLGKNKLSG--QIPTNICSNLP  154 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l--~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~  154 (253)
                      +++++|++++|.+.+..+..+..+++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+++  .++..++..++
T Consensus       149 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~  228 (312)
T 1wwl_A          149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARV  228 (312)
T ss_dssp             TTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTC
T ss_pred             CCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCC
Confidence            4555666666666555555566666666666666655433  22223  455666666666666651  22333444556


Q ss_pred             CccEEEeecCcCCCCCC-ccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEec
Q 025426          155 FLEFLSLSLNMFHGGIP-STLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSL  233 (253)
Q Consensus       155 ~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  233 (253)
                      +|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+.  ++|++|++++|++++. |. +..+++|+.|++
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L  303 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL  303 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence            66666666666655443 33444566666666666665 4555444  5666666666666543 43 566666666666


Q ss_pred             cCCCCce
Q 025426          234 PTNNLQV  240 (253)
Q Consensus       234 ~~n~l~~  240 (253)
                      ++|++++
T Consensus       304 ~~N~l~~  310 (312)
T 1wwl_A          304 KGNPFLD  310 (312)
T ss_dssp             TTCTTTC
T ss_pred             cCCCCCC
Confidence            6666654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.83  E-value=6.1e-21  Score=158.82  Aligned_cols=158  Identities=21%  Similarity=0.207  Sum_probs=106.4

Q ss_pred             CCeEEEEEeCCCCccccCCccC--CCCCCCCEEECCCCCCCCcCChhhhcc-----CCCCEEEccCCCCcCcCchhHhcC
Q 025426           80 SHRVTVLNISSLNLRGTIPSQL--GNLSSLQSLNLSCNRLSGSIPSTIFTI-----YTLKNVSLGKNKLSGQIPTNICSN  152 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~~  152 (253)
                      ..++++|++++|.+++..|..+  ..+++|++|++++|.+.+. |..+..+     ++|++|++++|.+. .+++..+..
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~  171 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRV  171 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhcc
Confidence            4567888888888887777765  7788888888888888755 7667666     78888888888887 455444477


Q ss_pred             CCCccEEEeecCcCCCC--CCccC--CCCCCcceEeeecCcCccc--CC-ccccCCCCCCeeecccCcCcccCC-hhhcC
Q 025426          153 LPFLEFLSLSLNMFHGG--IPSTL--SNCTYLRTLSLAYNDFSGA--VP-REIGNLTKLKVLYIGANRLQGEIP-REFGN  224 (253)
Q Consensus       153 l~~L~~L~l~~n~~~~~--~~~~~--~~l~~L~~L~L~~n~l~~~--~p-~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~  224 (253)
                      +++|++|++++|.+.+.  .+..+  ..+++|++|++++|.+++.  .+ ..+..+++|++|++++|.+++..| ..+..
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  251 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDW  251 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhh
Confidence            77888888888876543  22233  6667777777777777621  11 223455667777777777665543 34455


Q ss_pred             CCCCCEEeccCCCCc
Q 025426          225 LTELEQFSLPTNNLQ  239 (253)
Q Consensus       225 l~~L~~L~l~~n~l~  239 (253)
                      +++|+.|++++|.++
T Consensus       252 l~~L~~L~Ls~N~l~  266 (312)
T 1wwl_A          252 PSQLNSLNLSFTGLK  266 (312)
T ss_dssp             CTTCCEEECTTSCCS
T ss_pred             cCCCCEEECCCCccC
Confidence            666666666666666

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.83  E-value=1.7e-20  Score=175.36  Aligned_cols=174  Identities=24%  Similarity=0.214  Sum_probs=125.2

Q ss_pred             CccceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcC-ChhhhccCCCCEEEccCCCCcCcCch
Q 025426           69 CNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSI-PSTIFTIYTLKNVSLGKNKLSGQIPT  147 (253)
Q Consensus        69 c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~  147 (253)
                      +++..+..  .+++++.|++++|.+++..+..|..+++|+.|++++|...+.+ |..+.++++|++|++++|.+.+..|.
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~   91 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPD   91 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTT
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHh
Confidence            34444443  3567888888888888777888888888888888888554444 66788888888888888888733344


Q ss_pred             hHhcCCCCccEEEeecCcCCCCCCcc--CCCCCCcceEeeecCcCcccCC-ccccCCCCCCeeecccCcCcccCChhhcC
Q 025426          148 NICSNLPFLEFLSLSLNMFHGGIPST--LSNCTYLRTLSLAYNDFSGAVP-REIGNLTKLKVLYIGANRLQGEIPREFGN  224 (253)
Q Consensus       148 ~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~  224 (253)
                      . |..+++|++|++++|.+++..|..  +..+++|++|++++|.+++..+ ..+.++++|++|++++|.+++..+..+..
T Consensus        92 ~-~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~  170 (844)
T 3j0a_A           92 A-FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP  170 (844)
T ss_dssp             S-SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred             H-ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence            4 477888888888888887655544  7788888888888888876544 56778888888888888887766666665


Q ss_pred             C--CCCCEEeccCCCCceecchh
Q 025426          225 L--TELEQFSLPTNNLQVMILNF  245 (253)
Q Consensus       225 l--~~L~~L~l~~n~l~~~~p~~  245 (253)
                      +  ++|+.|++++|.+.+..|..
T Consensus       171 l~~~~L~~L~L~~n~l~~~~~~~  193 (844)
T 3j0a_A          171 LQGKTLSFFSLAANSLYSRVSVD  193 (844)
T ss_dssp             HHHCSSCCCEECCSBSCCCCCCC
T ss_pred             ccCCccceEECCCCccccccccc
Confidence            5  56666666666665555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.83  E-value=8.2e-21  Score=169.86  Aligned_cols=142  Identities=21%  Similarity=0.276  Sum_probs=70.8

Q ss_pred             CCCCCCCCEEECCCCCCCCcCC-hhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCC-CCCCccCCCCC
Q 025426          101 LGNLSSLQSLNLSCNRLSGSIP-STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFH-GGIPSTLSNCT  178 (253)
Q Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~l~  178 (253)
                      +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..|.. +..+++|++|++++|.++ +.+|..+..++
T Consensus       392 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~  470 (570)
T 2z63_A          392 FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGI-FNGLSSLEVLKMAGNSFQENFLPDIFTELR  470 (570)
T ss_dssp             EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTT-TTTCTTCCEEECTTCEEGGGEECSCCTTCT
T ss_pred             ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhh-hhcCCcCcEEECcCCcCccccchhhhhccc
Confidence            4444444444444444443322 23444555555555555554222222 244555555555555554 23445555555


Q ss_pred             CcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecc
Q 025426          179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMIL  243 (253)
Q Consensus       179 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  243 (253)
                      +|++|++++|++++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..|
T Consensus       471 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            55555555555554445555555555555555555554444455555555555555555555444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.83  E-value=5.2e-20  Score=164.82  Aligned_cols=161  Identities=23%  Similarity=0.341  Sum_probs=139.2

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCC--cCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCc
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG--SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL  156 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  156 (253)
                      ..++++.|++++|.+++..|..+..+++|+.|++++|.+++  ..|..+..+++|++|++++|.+.+.+|...+..+++|
T Consensus       351 ~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L  430 (562)
T 3a79_B          351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESI  430 (562)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTC
T ss_pred             CCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccC
Confidence            45789999999999998888899999999999999999985  3346688899999999999999966888877889999


Q ss_pred             cEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChh-hcCCCCCCEEeccC
Q 025426          157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPRE-FGNLTELEQFSLPT  235 (253)
Q Consensus       157 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~l~~  235 (253)
                      ++|++++|.+++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++
T Consensus       431 ~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~  506 (562)
T 3a79_B          431 LVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHD  506 (562)
T ss_dssp             CEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCS
T ss_pred             CEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecC
Confidence            9999999999877666554  68999999999998 67877779999999999999999 45554 89999999999999


Q ss_pred             CCCceecc
Q 025426          236 NNLQVMIL  243 (253)
Q Consensus       236 n~l~~~~p  243 (253)
                      |++.+..+
T Consensus       507 N~~~c~c~  514 (562)
T 3a79_B          507 NPWDCTCP  514 (562)
T ss_dssp             CCBCCCHH
T ss_pred             CCcCCCcc
Confidence            99987554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=1.5e-19  Score=165.21  Aligned_cols=167  Identities=22%  Similarity=0.277  Sum_probs=118.0

Q ss_pred             CCeEEEEEeCCCCccccCC-ccCCCCCCCCEEECCCCCC------------------------C--CcCChhhhccCCCC
Q 025426           80 SHRVTVLNISSLNLRGTIP-SQLGNLSSLQSLNLSCNRL------------------------S--GSIPSTIFTIYTLK  132 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~-~~~~~l~~L~~L~l~~n~l------------------------~--~~~~~~l~~l~~L~  132 (253)
                      .++++.|++++|.+.+.++ ..+..+++|+.|++++|.+                        .  +..|..+..+++|+
T Consensus       404 l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~  483 (680)
T 1ziw_A          404 LGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT  483 (680)
T ss_dssp             CTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCC
T ss_pred             CCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCC
Confidence            3456666666666654443 3455555555555555543                        3  34566677777888


Q ss_pred             EEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCC--------ccCCCCCCcceEeeecCcCcccCCccccCCCCC
Q 025426          133 NVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIP--------STLSNCTYLRTLSLAYNDFSGAVPREIGNLTKL  204 (253)
Q Consensus       133 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  204 (253)
                      +|++++|.++ .+++..+..+++|++|++++|.+++..+        ..+.++++|++|++++|+++...+..+.++++|
T Consensus       484 ~L~Ls~N~l~-~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L  562 (680)
T 1ziw_A          484 ILDLSNNNIA-NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFEL  562 (680)
T ss_dssp             EEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred             EEECCCCCCC-cCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCc
Confidence            8888888887 6666656778888888888888764321        236777888888888888884444567888888


Q ss_pred             CeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhh
Q 025426          205 KVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQ  247 (253)
Q Consensus       205 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~  247 (253)
                      ++|++++|.+++..+..|..+++|+.|++++|++++.+|..+.
T Consensus       563 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  605 (680)
T 1ziw_A          563 KIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG  605 (680)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred             ceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence            8888888888866667778888888888888888888887665

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.82  E-value=1.8e-19  Score=154.27  Aligned_cols=161  Identities=24%  Similarity=0.248  Sum_probs=102.6

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF  158 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  158 (253)
                      ..++++.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+. .+++..+..+++|++
T Consensus        91 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  169 (390)
T 3o6n_A           91 YAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN  169 (390)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCE
T ss_pred             CCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCE
Confidence            3456778888888877666666777778888888888777333334567777888888777777 454444467777777


Q ss_pred             EEeecCcCCCCCCc-----------------------------------------------------------cCCCCCC
Q 025426          159 LSLSLNMFHGGIPS-----------------------------------------------------------TLSNCTY  179 (253)
Q Consensus       159 L~l~~n~~~~~~~~-----------------------------------------------------------~~~~l~~  179 (253)
                      |++++|.+++....                                                           .+..+++
T Consensus       170 L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~  249 (390)
T 3o6n_A          170 LQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPG  249 (390)
T ss_dssp             EECCSSCCSBCCGGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTT
T ss_pred             EECCCCcCCccccccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCC
Confidence            77777776532111                                                           1333455


Q ss_pred             cceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCcee
Q 025426          180 LRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM  241 (253)
Q Consensus       180 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  241 (253)
                      |++|++++|.+++..|..+..+++|++|++++|.+++ +|..+..+++|+.|++++|++++.
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~~  310 (390)
T 3o6n_A          250 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV  310 (390)
T ss_dssp             CSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCCC
T ss_pred             ccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcceec
Confidence            6666666666665556666666666666666666653 344445566666666666666533

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.82  E-value=2e-19  Score=149.46  Aligned_cols=156  Identities=25%  Similarity=0.346  Sum_probs=111.9

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      .++++.|++++|.+.+. +. +..+++|+.|++++|.+.+ + ..+..+++|++|++++|.++ .++.  +..+++|++|
T Consensus        62 l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~-~-~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L  134 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKN-V-SAIAGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQVL  134 (308)
T ss_dssp             CTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCEEECTTSCCC-CCGG--GTTCTTCCEE
T ss_pred             cCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCC-c-hhhcCCCCCCEEECCCCCCC-Cchh--hcCCCCCCEE
Confidence            46788888888888743 33 7778888888888888764 3 35777888888888888887 5554  4677888888


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      ++++|.+++..+  +..+++|++|++++|.+++. +. +..+++|+.|++++|.+++..+  +..+++|+.|++++|+++
T Consensus       135 ~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          135 YLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred             ECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccC
Confidence            888888764333  67777888888888877743 33 6777788888888887774433  677777888888888777


Q ss_pred             eecchhhhhcc
Q 025426          240 VMILNFLQFYS  250 (253)
Q Consensus       240 ~~~p~~~~~l~  250 (253)
                      +.+|  +..++
T Consensus       209 ~~~~--l~~l~  217 (308)
T 1h6u_A          209 DVSP--LANTS  217 (308)
T ss_dssp             BCGG--GTTCT
T ss_pred             cccc--ccCCC
Confidence            6664  44443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.82  E-value=4.4e-20  Score=143.57  Aligned_cols=151  Identities=15%  Similarity=0.263  Sum_probs=129.1

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ++++.|++++|.+. .++ .+..+++|+.|++++|.+.  .+..+..+++|++|++++|.+++..+..+ ..+++|++|+
T Consensus        44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~  118 (197)
T 4ezg_A           44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNL-SGLTSLTLLD  118 (197)
T ss_dssp             HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCC-TTCTTCCEEE
T ss_pred             CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhh-cCCCCCCEEE
Confidence            56899999999998 556 5888999999999999765  34578899999999999999986566665 7899999999


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCc-CcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYND-FSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      +++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|++|++++|++++ ++ .+..+++|+.|++++|++.
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence            99999997778889999999999999998 66 455 68899999999999999985 34 7899999999999999986


Q ss_pred             e
Q 025426          240 V  240 (253)
Q Consensus       240 ~  240 (253)
                      +
T Consensus       195 ~  195 (197)
T 4ezg_A          195 G  195 (197)
T ss_dssp             -
T ss_pred             C
Confidence            5

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.82  E-value=1.8e-20  Score=174.54  Aligned_cols=166  Identities=19%  Similarity=0.335  Sum_probs=142.6

Q ss_pred             CCCeEEEEEeCCCCccc-----------------cCCccCC--CCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCC
Q 025426           79 HSHRVTVLNISSLNLRG-----------------TIPSQLG--NLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN  139 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~-----------------~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  139 (253)
                      ..++++.|++++|.+++                 .+|..+.  .+++|+.|++++|.+.+.+|..+..+++|++|++++|
T Consensus       446 ~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N  525 (876)
T 4ecn_A          446 RLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN  525 (876)
T ss_dssp             GCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTC
T ss_pred             cCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCC
Confidence            45689999999999997                 3888887  9999999999999999899999999999999999999


Q ss_pred             C-CcC-cCchhHh------cCCCCccEEEeecCcCCCCCCc--cCCCCCCcceEeeecCcCcccCCccccCCCCCCeeec
Q 025426          140 K-LSG-QIPTNIC------SNLPFLEFLSLSLNMFHGGIPS--TLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYI  209 (253)
Q Consensus       140 ~-l~~-~~~~~~~------~~l~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l  209 (253)
                      . +++ .+|..+.      ..+++|++|++++|.++ .+|.  .+..+++|++|++++|.++ .+| .+..+++|+.|++
T Consensus       526 ~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~L  602 (876)
T 4ecn_A          526 RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKL  602 (876)
T ss_dssp             TTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEEC
T ss_pred             CCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEEC
Confidence            8 887 6887651      23458999999999998 7887  8999999999999999998 777 8888999999999


Q ss_pred             ccCcCcccCChhhcCCCC-CCEEeccCCCCceecchhhhhc
Q 025426          210 GANRLQGEIPREFGNLTE-LEQFSLPTNNLQVMILNFLQFY  249 (253)
Q Consensus       210 ~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~~~~~l  249 (253)
                      ++|.++ .+|..+..+++ |+.|++++|.++ .+|..+..+
T Consensus       603 s~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~  641 (876)
T 4ecn_A          603 DYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAK  641 (876)
T ss_dssp             CSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTT
T ss_pred             cCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcc
Confidence            999988 78888888888 999999999988 566665543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.82  E-value=2.6e-20  Score=164.10  Aligned_cols=155  Identities=21%  Similarity=0.201  Sum_probs=68.7

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchh-------------
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTN-------------  148 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~-------------  148 (253)
                      +++.|++++|.+.+..|..|..+++|+.|++++|.+.+..|  +..+++|++|++++|.++ .++..             
T Consensus        35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~~~~~L~~L~L~~N~l  111 (487)
T 3oja_A           35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELLVGPSIETLHAANNNI  111 (487)
T ss_dssp             GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEEECTTCCEEECCSSCC
T ss_pred             CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCCCCCCcCEEECcCCcC
Confidence            44555555555554444444555555555555555443222  344444444444444332 11100             


Q ss_pred             ---HhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCcccc-CCCCCCeeecccCcCcccCChhhcC
Q 025426          149 ---ICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIG-NLTKLKVLYIGANRLQGEIPREFGN  224 (253)
Q Consensus       149 ---~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~l~~~~~~~~~~  224 (253)
                         ....+++|++|++++|.+++..|..+..+++|++|++++|.+++..|..+. .+++|++|++++|.+++..+  +..
T Consensus       112 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~  189 (487)
T 3oja_A          112 SRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVV  189 (487)
T ss_dssp             CCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCC
T ss_pred             CCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--ccc
Confidence               001234455555555555544444555555555555555555544444443 34444444444444443211  112


Q ss_pred             CCCCCEEeccCCCCcee
Q 025426          225 LTELEQFSLPTNNLQVM  241 (253)
Q Consensus       225 l~~L~~L~l~~n~l~~~  241 (253)
                      +++|+.|++++|.+++.
T Consensus       190 l~~L~~L~Ls~N~l~~~  206 (487)
T 3oja_A          190 FAKLKTLDLSSNKLAFM  206 (487)
T ss_dssp             CTTCCEEECCSSCCCEE
T ss_pred             CCCCCEEECCCCCCCCC
Confidence            34444444444444433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.81  E-value=1.4e-19  Score=160.37  Aligned_cols=146  Identities=21%  Similarity=0.283  Sum_probs=126.4

Q ss_pred             CCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcC--cCchhHhcCCCCccEEEeecCcCCCCCCc-cCCCCC
Q 025426          102 GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSG--QIPTNICSNLPFLEFLSLSLNMFHGGIPS-TLSNCT  178 (253)
Q Consensus       102 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~~l~  178 (253)
                      ..+++|++|++++|.+.+..|..+..+++|++|++++|.+++  .+|..+ ..+++|++|++++|.+++.+|. .+..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~-~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMT-TQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHH-TTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHH-hhCCCCCEEECCCCcCCcccccchhccCc
Confidence            678899999999999998889999999999999999999983  334444 8899999999999999875664 488899


Q ss_pred             CcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426          179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       179 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  251 (253)
                      +|++|++++|.+++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|+++++++..+..+++
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  469 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS  469 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence            999999999999877777664  78999999999998 78888889999999999999999766655766653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.81  E-value=6.3e-20  Score=153.00  Aligned_cols=162  Identities=16%  Similarity=0.149  Sum_probs=129.1

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      .++.|++++|.+++..+   ..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+..++..+++|++|++
T Consensus       100 ~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L  176 (317)
T 3o53_A          100 SIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL  176 (317)
T ss_dssp             TCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEEC
T ss_pred             CcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEEC
Confidence            34445555555543332   235789999999999987777788889999999999999985445555457899999999


Q ss_pred             ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc-e
Q 025426          162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ-V  240 (253)
Q Consensus       162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~  240 (253)
                      ++|.+++. + ....+++|++|++++|.+++ +|..+..+++|++|++++|+++ .+|..+..+++|+.|++++|++. +
T Consensus       177 ~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~  252 (317)
T 3o53_A          177 QYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCG  252 (317)
T ss_dssp             TTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHH
T ss_pred             CCCcCccc-c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCc
Confidence            99999854 3 23458899999999999994 5556888999999999999998 57888999999999999999998 7


Q ss_pred             ecchhhhhcc
Q 025426          241 MILNFLQFYS  250 (253)
Q Consensus       241 ~~p~~~~~l~  250 (253)
                      .+|.++..++
T Consensus       253 ~~~~~~~~~~  262 (317)
T 3o53_A          253 TLRDFFSKNQ  262 (317)
T ss_dssp             HHHHHHHTCH
T ss_pred             CHHHHHhccc
Confidence            8888777654

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.80  E-value=4.2e-19  Score=141.32  Aligned_cols=137  Identities=21%  Similarity=0.300  Sum_probs=124.3

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ..+++.|++++|.+.+..+..|..+++|+.|++++|.+....+..+..+++|++|++++|.++ .+++..|..+++|++|
T Consensus        39 ~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           39 PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeE
Confidence            367999999999999888999999999999999999998665667889999999999999999 7888777899999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccC
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI  218 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  218 (253)
                      ++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|+.|++++|++....
T Consensus       118 ~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A          118 FMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             ECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             eccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            99999998 78888999999999999999999776677899999999999999998543

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.80  E-value=2.4e-19  Score=167.68  Aligned_cols=89  Identities=19%  Similarity=0.188  Sum_probs=54.5

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChh--hhccCCCCEEEccCCCCcCcCchhHhcCCCCcc
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPST--IFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLE  157 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  157 (253)
                      .++++.|++++|.+.+..|..|.++++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..+...+..+++|+
T Consensus        72 L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~  151 (844)
T 3j0a_A           72 LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLK  151 (844)
T ss_dssp             CTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCC
T ss_pred             CCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCC
Confidence            345666677766666666666666666666666666666544443  566666666666666665333333345666666


Q ss_pred             EEEeecCcCCC
Q 025426          158 FLSLSLNMFHG  168 (253)
Q Consensus       158 ~L~l~~n~~~~  168 (253)
                      +|++++|.+++
T Consensus       152 ~L~Ls~N~i~~  162 (844)
T 3j0a_A          152 SIDFSSNQIFL  162 (844)
T ss_dssp             EEEEESSCCCC
T ss_pred             EEECCCCcCCe
Confidence            66666665544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=5.2e-19  Score=158.34  Aligned_cols=146  Identities=26%  Similarity=0.322  Sum_probs=125.2

Q ss_pred             CCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCch--hHhcCCCCccEEEeecCcCCCCCC-ccCCCCC
Q 025426          102 GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPT--NICSNLPFLEFLSLSLNMFHGGIP-STLSNCT  178 (253)
Q Consensus       102 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~l~  178 (253)
                      ..+++|++|++++|.+.+..|..+..+++|++|++++|.++ .++.  ..+..+++|++|++++|.+++.+| ..+..++
T Consensus       350 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~  428 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE  428 (562)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCC-BTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCT
T ss_pred             cCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcC-CcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcc
Confidence            67889999999999999888999999999999999999998 5543  334789999999999999987456 4588899


Q ss_pred             CcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426          179 YLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       179 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  251 (253)
                      +|++|++++|.+++..|..+.  ++|++|++++|+++ .+|..+..+++|+.|++++|+++++++..+..+++
T Consensus       429 ~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~  498 (562)
T 3a79_B          429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS  498 (562)
T ss_dssp             TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTT
T ss_pred             cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCC
Confidence            999999999999877766554  78999999999998 67777779999999999999999766654766653

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=4.8e-20  Score=153.23  Aligned_cols=156  Identities=18%  Similarity=0.182  Sum_probs=96.4

Q ss_pred             eEEEEEeCCCCccccCCccC--CCCCCCCEEECCCCCCCCcCC----hhhhccCCCCEEEccCCCCcCcCchhHhcCCCC
Q 025426           82 RVTVLNISSLNLRGTIPSQL--GNLSSLQSLNLSCNRLSGSIP----STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPF  155 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~----~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~  155 (253)
                      ++++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+. .++...+..+++
T Consensus        92 ~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~  170 (310)
T 4glp_A           92 RLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFPA  170 (310)
T ss_dssp             CCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCTT
T ss_pred             ceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCCC
Confidence            48888888888887777777  777888888888888775444    33445778888888888886 555444467777


Q ss_pred             ccEEEeecCcCCCC--C--CccCCCCCCcceEeeecCcCcccCCc----cccCCCCCCeeecccCcCcccCChhhcCC--
Q 025426          156 LEFLSLSLNMFHGG--I--PSTLSNCTYLRTLSLAYNDFSGAVPR----EIGNLTKLKVLYIGANRLQGEIPREFGNL--  225 (253)
Q Consensus       156 L~~L~l~~n~~~~~--~--~~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~l~~n~l~~~~~~~~~~l--  225 (253)
                      |++|++++|.+.+.  +  +..+..+++|++|++++|+++ .++.    .+..+++|++|++++|.+++..|..+..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            88888888776431  1  122245555666666666554 1221    12344555555555555554444444443  


Q ss_pred             -CCCCEEeccCCCCc
Q 025426          226 -TELEQFSLPTNNLQ  239 (253)
Q Consensus       226 -~~L~~L~l~~n~l~  239 (253)
                       ++|+.|++++|.++
T Consensus       250 ~~~L~~L~Ls~N~l~  264 (310)
T 4glp_A          250 SSALNSLNLSFAGLE  264 (310)
T ss_dssp             CTTCCCEECCSSCCC
T ss_pred             cCcCCEEECCCCCCC
Confidence             35555555555555

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.80  E-value=1.7e-19  Score=149.84  Aligned_cols=155  Identities=23%  Similarity=0.336  Sum_probs=102.0

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCc--C--ChhhhccCCCCEEEccCCCCcCcCchh---HhcC
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGS--I--PSTIFTIYTLKNVSLGKNKLSGQIPTN---ICSN  152 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~---~~~~  152 (253)
                      .++++.|++++|.+.+..+..+..+++|++|++++|.+.+.  +  +..+..+++|++|++++|.++ .++..   ++..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            35677777777777666666677777777777777776532  1  122346677777777777775 44332   3456


Q ss_pred             CCCccEEEeecCcCCCCCCccCCCC---CCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCC
Q 025426          153 LPFLEFLSLSLNMFHGGIPSTLSNC---TYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELE  229 (253)
Q Consensus       153 l~~L~~L~l~~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  229 (253)
                      +++|++|++++|.+++..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|++++|++++. |. +..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCcc
Confidence            6777777777777776656555554   57777777777777 5565553  6777777777777743 32 56667777


Q ss_pred             EEeccCCCCce
Q 025426          230 QFSLPTNNLQV  240 (253)
Q Consensus       230 ~L~l~~n~l~~  240 (253)
                      .|++++|++++
T Consensus       298 ~L~L~~N~l~~  308 (310)
T 4glp_A          298 NLTLDGNPFLV  308 (310)
T ss_dssp             CEECSSTTTSC
T ss_pred             EEECcCCCCCC
Confidence            77777777764

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.80  E-value=5.2e-19  Score=137.01  Aligned_cols=131  Identities=21%  Similarity=0.244  Sum_probs=109.8

Q ss_pred             EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCCh-hhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426           84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPS-TIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS  162 (253)
Q Consensus        84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  162 (253)
                      +.+++++++++ .+|..+.  .+++.|++++|.+.+..+. .+..+++|++|++++|.++ .+++..|..+++|++|+++
T Consensus        11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECC
Confidence            57788888886 6776554  3899999999999865554 4888999999999999998 4444444889999999999


Q ss_pred             cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccC
Q 025426          163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI  218 (253)
Q Consensus       163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  218 (253)
                      +|.+++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++++..
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c  142 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcC
Confidence            99998777788899999999999999999888888999999999999999988643

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.80  E-value=2.1e-19  Score=160.12  Aligned_cols=168  Identities=27%  Similarity=0.327  Sum_probs=144.1

Q ss_pred             CCccceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCch
Q 025426           68 VCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPT  147 (253)
Q Consensus        68 ~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~  147 (253)
                      .|.|.++ |          +.++++++ .+|..+.  ++|+.|++++|.+++..|..+..+++|++|++++|.+. .+++
T Consensus         3 ~C~~~~~-c----------~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-~~~~   67 (549)
T 2z81_A            3 SCDASGV-C----------DGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-TIEG   67 (549)
T ss_dssp             EECTTSE-E----------ECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-EECT
T ss_pred             cCCCCce-E----------ECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-ccCh
Confidence            4777776 5          44567777 6676554  79999999999999888889999999999999999999 5555


Q ss_pred             hHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcc-cCCccccCCCCCCeeecccCcCcccC-ChhhcCC
Q 025426          148 NICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG-AVPREIGNLTKLKVLYIGANRLQGEI-PREFGNL  225 (253)
Q Consensus       148 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l  225 (253)
                      ..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++ ..|..+.++++|++|++++|.+.+.+ +..+..+
T Consensus        68 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l  147 (549)
T 2z81_A           68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGL  147 (549)
T ss_dssp             TTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             hhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcc
Confidence            555899999999999999997777779999999999999999986 35678999999999999999954444 4689999


Q ss_pred             CCCCEEeccCCCCceecchhhhhcc
Q 025426          226 TELEQFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       226 ~~L~~L~l~~n~l~~~~p~~~~~l~  250 (253)
                      ++|+.|++++|.+++.+|..+..++
T Consensus       148 ~~L~~L~L~~n~l~~~~~~~l~~l~  172 (549)
T 2z81_A          148 TSLNELEIKALSLRNYQSQSLKSIR  172 (549)
T ss_dssp             CEEEEEEEEETTCCEECTTTTTTCS
T ss_pred             cccCeeeccCCcccccChhhhhccc
Confidence            9999999999999999999887764

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=1.2e-18  Score=143.69  Aligned_cols=153  Identities=33%  Similarity=0.397  Sum_probs=114.6

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      .++++.|++++|.+++..+  +..+++|+.|++++|.+.+ + ..+..+++|++|++++|.+. .++ . +..+++|++|
T Consensus        67 l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~i~-~~~-~-l~~l~~L~~L  139 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLEHNGIS-DIN-G-LVHLPQLESL  139 (291)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECTTSCCC-CCG-G-GGGCTTCCEE
T ss_pred             CCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECCCCcCC-CCh-h-hcCCCCCCEE
Confidence            4678888888888874433  7788888888888888864 3 34777888888888888887 453 2 3677888888


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      ++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|++|++++|.+++ ++ .+..+++|+.|++++|+++
T Consensus       140 ~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          140 YLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             ECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             EccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCccc
Confidence            8888888744  567778888888888888875444  7778888888888888874 33 4788888888888888877


Q ss_pred             eecchh
Q 025426          240 VMILNF  245 (253)
Q Consensus       240 ~~~p~~  245 (253)
                      ..+...
T Consensus       214 ~~~~~~  219 (291)
T 1h6t_A          214 NKPINH  219 (291)
T ss_dssp             CCCEEC
T ss_pred             CCcccc
Confidence            655443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.79  E-value=1.6e-19  Score=159.01  Aligned_cols=161  Identities=16%  Similarity=0.150  Sum_probs=126.2

Q ss_pred             EEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426           83 VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS  162 (253)
Q Consensus        83 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  162 (253)
                      ++.|++++|.+.+..+   ..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..|..++..+++|++|+++
T Consensus       101 L~~L~L~~N~l~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls  177 (487)
T 3oja_A          101 IETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (487)
T ss_dssp             CCEEECCSSCCCCEEE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             cCEEECcCCcCCCCCc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence            3444444444443222   2357889999999999887788888899999999999999866666664578999999999


Q ss_pred             cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc-ee
Q 025426          163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ-VM  241 (253)
Q Consensus       163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~  241 (253)
                      +|.+++. + .+..+++|++|++++|.+++ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|++. +.
T Consensus       178 ~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          178 YNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             TSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             CCccccc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcc
Confidence            9999855 2 23468899999999999995 4555888899999999999998 46778889999999999999998 77


Q ss_pred             cchhhhhcc
Q 025426          242 ILNFLQFYS  250 (253)
Q Consensus       242 ~p~~~~~l~  250 (253)
                      +|.++..++
T Consensus       254 ~~~~~~~l~  262 (487)
T 3oja_A          254 LRDFFSKNQ  262 (487)
T ss_dssp             HHHHHTTCH
T ss_pred             hHHHHHhCC
Confidence            777776553

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.79  E-value=1.4e-18  Score=144.27  Aligned_cols=155  Identities=21%  Similarity=0.341  Sum_probs=132.6

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ++++.|+++++.+.. ++ .+..+++|+.|++++|.+.+ ++. +..+++|++|++++|.+. .++.  +..+++|++|+
T Consensus        41 ~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~L~  113 (308)
T 1h6u_A           41 DGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLK-NVSA--IAGLQSIKTLD  113 (308)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCS-CCGG--GTTCTTCCEEE
T ss_pred             CCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCC-Cchh--hcCCCCCCEEE
Confidence            578999999999984 44 58889999999999999985 444 899999999999999998 6653  47899999999


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +++|.+++ ++ .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++..+  +..+++|+.|++++|.+++
T Consensus       114 l~~n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~  187 (308)
T 1h6u_A          114 LTSTQITD-VT-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISD  187 (308)
T ss_dssp             CTTSCCCC-CG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             CCCCCCCC-ch-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCc
Confidence            99999985 34 38899999999999999985433  8889999999999999985433  8999999999999999998


Q ss_pred             ecchhhhhcc
Q 025426          241 MILNFLQFYS  250 (253)
Q Consensus       241 ~~p~~~~~l~  250 (253)
                      .++  +..++
T Consensus       188 ~~~--l~~l~  195 (308)
T 1h6u_A          188 ISP--LASLP  195 (308)
T ss_dssp             CGG--GGGCT
T ss_pred             Chh--hcCCC
Confidence            776  55544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.79  E-value=1.4e-18  Score=146.30  Aligned_cols=157  Identities=23%  Similarity=0.371  Sum_probs=116.5

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ++++.|++++|.+.+. +. +..+++|+.+++++|.+.+..+  +..+++|++|++++|.++ .++.  +..+++|++|+
T Consensus       177 ~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~  249 (347)
T 4fmz_A          177 TDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT-DLSP--LANLSQLTWLE  249 (347)
T ss_dssp             TTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEE
T ss_pred             CCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC-CCcc--hhcCCCCCEEE
Confidence            4566666666665532 22 5556666666666666653322  677788888888888887 5555  47788888888


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +++|.+++.  ..+..+++|++|++++|.+++.  +.+..+++|++|++++|++++..+..+..+++|+.|++++|++++
T Consensus       250 l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  325 (347)
T 4fmz_A          250 IGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITD  325 (347)
T ss_dssp             CCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCC
T ss_pred             CCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCcccc
Confidence            888888743  4577888899999999888753  457788889999999999888888888899999999999999988


Q ss_pred             ecchhhhhcc
Q 025426          241 MILNFLQFYS  250 (253)
Q Consensus       241 ~~p~~~~~l~  250 (253)
                      .+|  +..++
T Consensus       326 ~~~--~~~l~  333 (347)
T 4fmz_A          326 IRP--LASLS  333 (347)
T ss_dssp             CGG--GGGCT
T ss_pred             ccC--hhhhh
Confidence            877  54444

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.79  E-value=6.3e-19  Score=145.28  Aligned_cols=156  Identities=21%  Similarity=0.300  Sum_probs=133.4

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      .+++.|++++|.+.. ++ .+..+++|+.|++++|.+++.. . +..+++|++|++++|.+. .++.  +..+++|++|+
T Consensus        46 ~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~  118 (291)
T 1h6t_A           46 NSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK-P-LANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLS  118 (291)
T ss_dssp             HTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEEE
T ss_pred             CcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCc-c-cccCCCCCEEECCCCcCC-CChh--hccCCCCCEEE
Confidence            568999999999984 34 4788999999999999998544 3 889999999999999998 5655  48899999999


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +++|.+++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++..+  +..+++|+.|++++|.+++
T Consensus       119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          119 LEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB
T ss_pred             CCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCC
Confidence            999999853  5688899999999999999854  678899999999999999986554  9999999999999999997


Q ss_pred             ecchhhhhccc
Q 025426          241 MILNFLQFYSS  251 (253)
Q Consensus       241 ~~p~~~~~l~~  251 (253)
                      ..+  +..+++
T Consensus       193 l~~--l~~l~~  201 (291)
T 1h6t_A          193 LRA--LAGLKN  201 (291)
T ss_dssp             CGG--GTTCTT
T ss_pred             Chh--hccCCC
Confidence            633  665543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.79  E-value=1.2e-19  Score=151.23  Aligned_cols=163  Identities=26%  Similarity=0.272  Sum_probs=84.0

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCCh----------------hhhccCCCCEEEccCCCCcC
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPS----------------TIFTIYTLKNVSLGKNKLSG  143 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----------------~l~~l~~L~~L~l~~n~l~~  143 (253)
                      .++++.|++++|.+++..+  +..+++|++|++++|.+++..+.                ....+++|++|++++|.++ 
T Consensus        57 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~-  133 (317)
T 3o53_A           57 FTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKIT-  133 (317)
T ss_dssp             CTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCC-
T ss_pred             CCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCC-
Confidence            4567777777777764443  66677777777777766521100                0011233444444444444 


Q ss_pred             cCchhHhcCCCCccEEEeecCcCCCCCCccC-CCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhh
Q 025426          144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTL-SNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREF  222 (253)
Q Consensus       144 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~  222 (253)
                      .+++..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++ +|..+
T Consensus       134 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~-l~~~~  210 (317)
T 3o53_A          134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAF-MGPEF  210 (317)
T ss_dssp             SGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCE-ECGGG
T ss_pred             CccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCc-chhhh
Confidence            2322222444555555555555554333333 2445555555555555532 2 12235566666666666663 33346


Q ss_pred             cCCCCCCEEeccCCCCceecchhhhhc
Q 025426          223 GNLTELEQFSLPTNNLQVMILNFLQFY  249 (253)
Q Consensus       223 ~~l~~L~~L~l~~n~l~~~~p~~~~~l  249 (253)
                      ..+++|+.|++++|.+++. |..+..+
T Consensus       211 ~~l~~L~~L~L~~N~l~~l-~~~~~~l  236 (317)
T 3o53_A          211 QSAAGVTWISLRNNKLVLI-EKALRFS  236 (317)
T ss_dssp             GGGTTCSEEECTTSCCCEE-CTTCCCC
T ss_pred             cccCcccEEECcCCcccch-hhHhhcC
Confidence            6666677777777766643 3344433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.78  E-value=9.5e-20  Score=167.54  Aligned_cols=203  Identities=23%  Similarity=0.284  Sum_probs=93.6

Q ss_pred             ChhhHHHHHHHHHhcCCCCCccccCCCC-CCCCCCccceeeeCCCCCeEEEEEeCCCCccccCCccCCCCCCCC-----E
Q 025426           36 TITDRDALLALKAHITHDPTNFLAKNWN-TSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQ-----S  109 (253)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~l~~~w~-~~~~~c~~~g~~c~~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~-----~  109 (253)
                      .+.++.++..+...........-.. |. .......|.+..+.  .+.++.|++.++.+.. .+..+.....|.     .
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~  205 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKTAKKQQ-PTGDSTPSGTATNSAVS--TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDE  205 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccCcccCC-CcCCCCccccCCCceec--CCccceEEeeCCCCCc-chhhHhhcCccCcccccC
Confidence            3456677777775543222221222 42 33345566665553  3567777777777663 232222111222     2


Q ss_pred             EECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCc
Q 025426          110 LNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYND  189 (253)
Q Consensus       110 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~  189 (253)
                      +++..|.+. ..+..+..+.+|++|++++|.+. .+|..++ .+++|++|+|++|.++ .+|..|..+++|++|+|++|.
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~-~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIF-KYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR  281 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGG-GCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred             cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhc-CCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence            222333333 34556666777777777777776 6776663 6677777777777776 666667777777777777777


Q ss_pred             CcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhh
Q 025426          190 FSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQF  248 (253)
Q Consensus       190 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  248 (253)
                      ++ .+|..+.++++|++|+|++|.++ .+|..|+.+++|+.|+|++|++++.+|..+..
T Consensus       282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            77 56777777777777777777775 55666777777777777777777777766644

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.78  E-value=7e-19  Score=142.93  Aligned_cols=152  Identities=20%  Similarity=0.278  Sum_probs=130.2

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ..+++.|++++|++. .++ .+..+++|+.|++++|.+.+. +. +..+++|++|++++|.++ .++...  . ++|++|
T Consensus        40 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~-~~-l~~l~~L~~L~L~~N~l~-~l~~~~--~-~~L~~L  111 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDL-SP-LKDLTKLEELSVNRNRLK-NLNGIP--S-ACLSRL  111 (263)
T ss_dssp             HTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCSSCCEEECCSSCCS-CCTTCC--C-SSCCEE
T ss_pred             cCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCC-hh-hccCCCCCEEECCCCccC-CcCccc--c-CcccEE
Confidence            367899999999998 455 688899999999999999854 44 889999999999999998 676633  3 899999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      ++++|.+++.  ..+..+++|++|++++|++++. + .+..+++|++|++++|++++.  ..+..+++|+.|++++|+++
T Consensus       112 ~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~  185 (263)
T 1xeu_A          112 FLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV  185 (263)
T ss_dssp             ECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred             EccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence            9999999853  3588999999999999999854 3 688899999999999999865  67899999999999999998


Q ss_pred             eecchh
Q 025426          240 VMILNF  245 (253)
Q Consensus       240 ~~~p~~  245 (253)
                      +.+...
T Consensus       186 ~~~~~~  191 (263)
T 1xeu_A          186 NEPVKY  191 (263)
T ss_dssp             CCCEEC
T ss_pred             CCcccc
Confidence            775443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.78  E-value=9.3e-19  Score=132.51  Aligned_cols=136  Identities=22%  Similarity=0.177  Sum_probs=98.9

Q ss_pred             CCCCCEEECCCCCCC-CcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcce
Q 025426          104 LSSLQSLNLSCNRLS-GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRT  182 (253)
Q Consensus       104 l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~  182 (253)
                      .++|+.|++++|.+. +.+|..+..+++|++|++++|.++ .+ .. +..+++|++|++++|.+++.+|..+..+++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~-~~-~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV-SN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCC-CC-SS-CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCC-Ch-hh-hccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            356777777777776 566766777778888888888776 44 33 367777888888888877656666666778888


Q ss_pred             EeeecCcCcccC-CccccCCCCCCeeecccCcCcccCC---hhhcCCCCCCEEeccCCCCceec
Q 025426          183 LSLAYNDFSGAV-PREIGNLTKLKVLYIGANRLQGEIP---REFGNLTELEQFSLPTNNLQVMI  242 (253)
Q Consensus       183 L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~~n~l~~~~  242 (253)
                      |++++|.+++.. +..+..+++|++|++++|++++..+   ..+..+++|+.|++++|.+...+
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  163 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAP  163 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcc
Confidence            888888877432 2667778888888888888875544   46778888888888888876544

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.77  E-value=3e-18  Score=153.02  Aligned_cols=150  Identities=23%  Similarity=0.304  Sum_probs=117.4

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      .++++.|++++|.+++ +|. +..  +|+.|++++|.+++ +|.   .+++|++|++++|.++ .+|.    .+++|++|
T Consensus        99 l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~----~l~~L~~L  165 (571)
T 3cvr_A           99 PASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLT-MLPE----LPTSLEVL  165 (571)
T ss_dssp             CTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-CCCC----CCTTCCEE
T ss_pred             cCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccC-cCCC----cCCCcCEE
Confidence            4567777777777774 555 443  77888888887774 555   5678888888888887 5665    46788899


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCC-------CeeecccCcCcccCChhhcCCCCCCEEe
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKL-------KVLYIGANRLQGEIPREFGNLTELEQFS  232 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L-------~~L~l~~n~l~~~~~~~~~~l~~L~~L~  232 (253)
                      ++++|.+++ +|. +.  ++|++|++++|.++ .+|. +..  +|       +.|++++|.++ .+|..+..+++|+.|+
T Consensus       166 ~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~  236 (571)
T 3cvr_A          166 SVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII  236 (571)
T ss_dssp             ECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEE
T ss_pred             ECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEE
Confidence            999998885 666 55  88999999999998 6666 554  67       99999999998 6788888899999999


Q ss_pred             ccCCCCceecchhhhhccc
Q 025426          233 LPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       233 l~~n~l~~~~p~~~~~l~~  251 (253)
                      +++|++++.+|..++.+.+
T Consensus       237 L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          237 LEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             CCSSSCCHHHHHHHHHHHH
T ss_pred             eeCCcCCCcCHHHHHHhhc
Confidence            9999999999999988754

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.77  E-value=1.1e-18  Score=147.42  Aligned_cols=181  Identities=17%  Similarity=0.112  Sum_probs=133.7

Q ss_pred             CCccceeeeC---------CCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCC-hhhhccCCCCE-EEc
Q 025426           68 VCNWTGVACD---------VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIP-STIFTIYTLKN-VSL  136 (253)
Q Consensus        68 ~c~~~g~~c~---------~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~-L~l  136 (253)
                      .|.+..+.|.         .-+.++++|+|++|+|+...+..|.++++|++|++++|.+.+.++ .+|.+++++++ +.+
T Consensus         8 ~C~~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X            8 HCSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             EEETTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             EeeCCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            3666677775         123568999999999996666678999999999999999865555 45677888765 556


Q ss_pred             cCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccC-------------------------CCC-CCcceEeeecCcC
Q 025426          137 GKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTL-------------------------SNC-TYLRTLSLAYNDF  190 (253)
Q Consensus       137 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------------------------~~l-~~L~~L~L~~n~l  190 (253)
                      .+|.+. .+++..|..+++|++|++++|.++...+..+                         ..+ ..+++|++++|++
T Consensus        88 ~~N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC
T ss_pred             cCCccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc
Confidence            678887 7777777888899999998888764333222                         222 2466778888888


Q ss_pred             cccCCccccCCCCCCeeeccc-CcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426          191 SGAVPREIGNLTKLKVLYIGA-NRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       191 ~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  250 (253)
                      + .++.......+|+.+++.+ |.++...++.|..+++|+.||+++|+++.+++..+.+++
T Consensus       167 ~-~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~  226 (350)
T 4ay9_X          167 Q-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK  226 (350)
T ss_dssp             C-EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCC
T ss_pred             c-CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccch
Confidence            7 4455555567788888875 556644456789999999999999999988887777765

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=2.4e-18  Score=154.95  Aligned_cols=155  Identities=32%  Similarity=0.375  Sum_probs=131.6

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF  158 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  158 (253)
                      ..++++.|+|++|.+.+..+  +..+++|+.|++++|.+.+ ++ .+..+++|++|++++|.+. .++.  +..+++|+.
T Consensus        63 ~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L~~L~Ls~N~l~-~l~~--l~~l~~L~~  135 (605)
T 1m9s_A           63 YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKLKSLSLEHNGIS-DING--LVHLPQLES  135 (605)
T ss_dssp             GCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTCCEEECTTSCCC-CCGG--GGGCTTCSE
T ss_pred             cCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCCCEEEecCCCCC-CCcc--ccCCCccCE
Confidence            35789999999999985544  8889999999999999974 33 6889999999999999998 5544  478999999


Q ss_pred             EEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426          159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       159 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      |++++|.+++.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.+++.  ..+..+++|+.|+|++|++
T Consensus       136 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          136 LYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             EECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEE
T ss_pred             EECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcC
Confidence            99999999854  678899999999999999996655  88999999999999999854  4689999999999999999


Q ss_pred             ceecchhh
Q 025426          239 QVMILNFL  246 (253)
Q Consensus       239 ~~~~p~~~  246 (253)
                      .+.+...+
T Consensus       210 ~~~p~~~~  217 (605)
T 1m9s_A          210 LNKPINHQ  217 (605)
T ss_dssp             ECCCCCCC
T ss_pred             cCCccccc
Confidence            87654433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.77  E-value=3.1e-18  Score=133.10  Aligned_cols=141  Identities=16%  Similarity=0.214  Sum_probs=123.0

Q ss_pred             CCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcc
Q 025426          102 GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR  181 (253)
Q Consensus       102 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  181 (253)
                      ..+++|+.|++++|.+. .++ .+..+++|++|++++|.+. .++ . +..+++|++|++++|.+++..+..+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~-~~~-~-l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  115 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT-NYN-P-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT  115 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS-CCG-G-GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC-cch-h-hhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence            45678999999999998 566 6899999999999999886 554 3 47899999999999999977888899999999


Q ss_pred             eEeeecCcCcccCCccccCCCCCCeeecccCc-CcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426          182 TLSLAYNDFSGAVPREIGNLTKLKVLYIGANR-LQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       182 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  251 (253)
                      +|++++|.+++..+..+..+++|++|++++|. ++ .+| .+..+++|+.|++++|.+++..  .+..+++
T Consensus       116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~  182 (197)
T 4ezg_A          116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPK  182 (197)
T ss_dssp             EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSS
T ss_pred             EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCC
Confidence            99999999998788899999999999999998 65 555 6999999999999999999754  4555543

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.76  E-value=5.9e-18  Score=131.03  Aligned_cols=109  Identities=27%  Similarity=0.368  Sum_probs=51.1

Q ss_pred             eEEEEEeCCCCccccCCc-cCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           82 RVTVLNISSLNLRGTIPS-QLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      +++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++|.++ .+++..+..+++|++|+
T Consensus        30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~  108 (192)
T 1w8a_A           30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLN  108 (192)
T ss_dssp             TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEEE
T ss_pred             CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC-ccCHHHhcCCCCCCEEE
Confidence            344455555544433322 2444445555555555554444444444555555555555554 33332224444555555


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCc
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS  191 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  191 (253)
                      +++|.+++..|..+..+++|++|++++|.+.
T Consensus       109 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A          109 LYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            5555554444444444455555555555444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.76  E-value=1.2e-17  Score=129.52  Aligned_cols=128  Identities=30%  Similarity=0.357  Sum_probs=110.5

Q ss_pred             EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426           84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL  163 (253)
Q Consensus        84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  163 (253)
                      +.+++++++++ .+|..+.  ++|+.|++++|.++ .+|..+..+++|++|++++|.++ .+++..|..+++|++|++++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCC
Confidence            46788888888 6666543  68999999999998 77888999999999999999998 77776668999999999999


Q ss_pred             CcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc
Q 025426          164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG  216 (253)
Q Consensus       164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  216 (253)
                      |.+++..+..|..+++|++|++++|.++...+..+..+++|+.|++++|++..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            99997777889999999999999999996666678889999999999999863

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.76  E-value=1.1e-17  Score=146.46  Aligned_cols=149  Identities=28%  Similarity=0.423  Sum_probs=65.2

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      +++.|++++|.+.+.  ..+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+. .+++  +..+++|++|++
T Consensus       222 ~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~-~~~~--~~~l~~L~~L~L  294 (466)
T 1o6v_A          222 NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQIS-NISP--LAGLTALTNLEL  294 (466)
T ss_dssp             TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEEC
T ss_pred             CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccC-cccc--ccCCCccCeEEc
Confidence            344444444444321  123344444444444444442221  444444444444444444 2332  234444445555


Q ss_pred             ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCcee
Q 025426          162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM  241 (253)
Q Consensus       162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  241 (253)
                      ++|.+++..+  +..+++|++|++++|.+++..|  +..+++|++|++++|.+++.  ..+..+++|+.|++++|++++.
T Consensus       295 ~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~  368 (466)
T 1o6v_A          295 NENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDL  368 (466)
T ss_dssp             CSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBC
T ss_pred             CCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCcc
Confidence            4444443222  3444445555555554443322  33444444444444444432  2344445555555555555444


Q ss_pred             cc
Q 025426          242 IL  243 (253)
Q Consensus       242 ~p  243 (253)
                      +|
T Consensus       369 ~~  370 (466)
T 1o6v_A          369 TP  370 (466)
T ss_dssp             GG
T ss_pred             ch
Confidence            44

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.76  E-value=1.4e-17  Score=127.18  Aligned_cols=130  Identities=22%  Similarity=0.301  Sum_probs=94.5

Q ss_pred             EEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecC
Q 025426           85 VLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLN  164 (253)
Q Consensus        85 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  164 (253)
                      .+++++++++ .+|..+  .++|+.|++++|.+++..+..+..+++|++|++++|.++ .+++..+..+++|++|++++|
T Consensus        11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCCC
Confidence            4555566666 445433  367888888888888655566777888888888888887 666666677888888888888


Q ss_pred             cCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccC
Q 025426          165 MFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEI  218 (253)
Q Consensus       165 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~  218 (253)
                      .+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            887655566777788888888888887555555667777888888888777543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.75  E-value=3.9e-18  Score=129.06  Aligned_cols=137  Identities=23%  Similarity=0.215  Sum_probs=117.9

Q ss_pred             CCeEEEEEeCCCCcc-ccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426           80 SHRVTVLNISSLNLR-GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF  158 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  158 (253)
                      +++++.|++++|.++ +.+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+.+.+|..+ ..+++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA-EKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH-HHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH-hhCCCCCE
Confidence            367999999999998 77888889999999999999999855  778899999999999999995565544 77999999


Q ss_pred             EEeecCcCCCCCC-ccCCCCCCcceEeeecCcCcccCC---ccccCCCCCCeeecccCcCcccCCh
Q 025426          159 LSLSLNMFHGGIP-STLSNCTYLRTLSLAYNDFSGAVP---REIGNLTKLKVLYIGANRLQGEIPR  220 (253)
Q Consensus       159 L~l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l~~n~l~~~~~~  220 (253)
                      |++++|.+++... ..+..+++|++|++++|.+++..+   ..+..+++|++|++++|.+. ..|+
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            9999999985432 788999999999999999995544   47889999999999999987 4443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.75  E-value=2.3e-17  Score=138.79  Aligned_cols=140  Identities=26%  Similarity=0.374  Sum_probs=98.7

Q ss_pred             CCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCc
Q 025426          101 LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL  180 (253)
Q Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  180 (253)
                      +..+++|+.|++++|.+.+ .+. +..+++|++|++++|.+. .++.  +..+++|++|++++|.+++..+  +..+++|
T Consensus       173 ~~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~-~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L  245 (347)
T 4fmz_A          173 IANLTDLYSLSLNYNQIED-ISP-LASLTSLHYFTAYVNQIT-DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQL  245 (347)
T ss_dssp             GGGCTTCSEEECTTSCCCC-CGG-GGGCTTCCEEECCSSCCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTC
T ss_pred             hccCCCCCEEEccCCcccc-ccc-ccCCCccceeecccCCCC-CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCC
Confidence            3444555555555555542 222 455555666666666555 3333  3667788888888888874333  7788888


Q ss_pred             ceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426          181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       181 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  251 (253)
                      ++|++++|.+++.  +.+..+++|++|++++|.+++.  +.+..+++|+.|++++|.+++..|..+..+++
T Consensus       246 ~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  312 (347)
T 4fmz_A          246 TWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTN  312 (347)
T ss_dssp             CEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTT
T ss_pred             CEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhcccc
Confidence            8888888888743  4677888999999999988754  46888999999999999999998888887764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.75  E-value=7.9e-18  Score=147.40  Aligned_cols=151  Identities=28%  Similarity=0.405  Sum_probs=132.1

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF  158 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  158 (253)
                      ..++++.|++++|.+.+..+  +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+. .+++  +..+++|++
T Consensus       241 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~-~~~~--~~~l~~L~~  313 (466)
T 1o6v_A          241 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE-DISP--ISNLKNLTY  313 (466)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS-CCGG--GGGCTTCSE
T ss_pred             cCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc-Cchh--hcCCCCCCE
Confidence            34689999999999985544  8889999999999999985433  888999999999999998 5555  478999999


Q ss_pred             EEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426          159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       159 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      |++++|.+++..|  +..+++|++|++++|.+++.  ..+..+++|++|++++|++++..|  +..+++|+.|++++|++
T Consensus       314 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~  387 (466)
T 1o6v_A          314 LTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAW  387 (466)
T ss_dssp             EECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEE
T ss_pred             EECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcc
Confidence            9999999986655  77899999999999999864  578899999999999999997776  89999999999999999


Q ss_pred             ceec
Q 025426          239 QVMI  242 (253)
Q Consensus       239 ~~~~  242 (253)
                      ++.+
T Consensus       388 ~~~p  391 (466)
T 1o6v_A          388 TNAP  391 (466)
T ss_dssp             ECCC
T ss_pred             cCCc
Confidence            8843

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.75  E-value=9.6e-18  Score=151.03  Aligned_cols=157  Identities=22%  Similarity=0.328  Sum_probs=134.6

Q ss_pred             CCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           80 SHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ..+++.|++++|.+. .++ .+..+++|+.|++++|.+.+..+  +..+++|++|++++|.+. .++ . +..+++|++|
T Consensus        42 L~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-~-l~~l~~L~~L  114 (605)
T 1m9s_A           42 LNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIK-DLS-S-LKDLKKLKSL  114 (605)
T ss_dssp             HTTCCCCBCTTCCCC-CCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC-CCT-T-STTCTTCCEE
T ss_pred             CCCCCEEECcCCCCC-CCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCC-CCh-h-hccCCCCCEE
Confidence            356889999999988 344 58889999999999999985444  889999999999999998 665 3 4789999999


Q ss_pred             EeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          160 SLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       160 ~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      ++++|.+++ + ..+..+++|+.|++++|.+++.  ..+..+++|+.|+|++|.+.+..|  +..+++|+.|+|++|.++
T Consensus       115 ~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~  188 (605)
T 1m9s_A          115 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS  188 (605)
T ss_dssp             ECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred             EecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCC
Confidence            999999985 3 4588999999999999999964  678899999999999999997655  999999999999999999


Q ss_pred             eecchhhhhccc
Q 025426          240 VMILNFLQFYSS  251 (253)
Q Consensus       240 ~~~p~~~~~l~~  251 (253)
                      +. | .+..+++
T Consensus       189 ~l-~-~l~~l~~  198 (605)
T 1m9s_A          189 DL-R-ALAGLKN  198 (605)
T ss_dssp             BC-G-GGTTCTT
T ss_pred             CC-h-HHccCCC
Confidence            86 3 4665543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.75  E-value=2.2e-19  Score=165.15  Aligned_cols=158  Identities=23%  Similarity=0.290  Sum_probs=113.9

Q ss_pred             EEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCc
Q 025426           86 LNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNM  165 (253)
Q Consensus        86 L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~  165 (253)
                      +++..|.+. ..+..+..+.+|+.|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..+ ..+++|++|+|++|.
T Consensus       206 ~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          206 DDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI-KNLSNLRVLDLSHNR  281 (727)
T ss_dssp             -----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG-GGGTTCCEEECTTSC
T ss_pred             cccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh-hCCCCCCEEeCcCCc
Confidence            333333333 45667888889999999999987 77877888999999999999998 888776 788999999999999


Q ss_pred             CCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCC-CCEEeccCCCCceecch
Q 025426          166 FHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTE-LEQFSLPTNNLQVMILN  244 (253)
Q Consensus       166 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~p~  244 (253)
                      ++ .+|..|..+++|++|+|++|.++ .+|..+.++++|++|+|++|.+++.+|..+..+.. ...+++++|.+++.+|.
T Consensus       282 l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          282 LT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence            98 77888899999999999999987 77888999999999999999998877777654321 12356666666666666


Q ss_pred             hhhhc
Q 025426          245 FLQFY  249 (253)
Q Consensus       245 ~~~~l  249 (253)
                      .+..+
T Consensus       360 ~l~~l  364 (727)
T 4b8c_D          360 ERRFI  364 (727)
T ss_dssp             C----
T ss_pred             cccee
Confidence            55544

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.75  E-value=2.6e-19  Score=150.05  Aligned_cols=157  Identities=22%  Similarity=0.235  Sum_probs=97.5

Q ss_pred             CeEEEEEeCCCCcccc-CCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCC-CCcCcCchhHhcCCCCccE
Q 025426           81 HRVTVLNISSLNLRGT-IPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKN-KLSGQIPTNICSNLPFLEF  158 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~  158 (253)
                      ++++.|++++|.+.+. ++..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++...+..+..+++|++
T Consensus        93 ~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~  172 (336)
T 2ast_B           93 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDE  172 (336)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCE
T ss_pred             CCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCE
Confidence            5567777777766644 5555666677777777777766566666666777777777777 4553212222356667777


Q ss_pred             EEeecC-cCCCC-CCccCCCCC-CcceEeeecC--cCc-ccCCccccCCCCCCeeecccCc-CcccCChhhcCCCCCCEE
Q 025426          159 LSLSLN-MFHGG-IPSTLSNCT-YLRTLSLAYN--DFS-GAVPREIGNLTKLKVLYIGANR-LQGEIPREFGNLTELEQF  231 (253)
Q Consensus       159 L~l~~n-~~~~~-~~~~~~~l~-~L~~L~L~~n--~l~-~~~p~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L  231 (253)
                      |++++| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|++|++++|. +++..+..+..+++|+.|
T Consensus       173 L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L  252 (336)
T 2ast_B          173 LNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL  252 (336)
T ss_dssp             EECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             EcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEe
Confidence            777777 66542 344455666 6777777666  333 2344555566667777776666 555555566666666677


Q ss_pred             eccCCC
Q 025426          232 SLPTNN  237 (253)
Q Consensus       232 ~l~~n~  237 (253)
                      ++++|.
T Consensus       253 ~l~~~~  258 (336)
T 2ast_B          253 SLSRCY  258 (336)
T ss_dssp             ECTTCT
T ss_pred             eCCCCC
Confidence            766664

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.74  E-value=3.2e-17  Score=126.98  Aligned_cols=126  Identities=26%  Similarity=0.371  Sum_probs=67.8

Q ss_pred             EEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecC
Q 025426          109 SLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYN  188 (253)
Q Consensus       109 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  188 (253)
                      .+++++|.++ .+|..+  .++|++|++++|.++ .+|..+ ..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~-~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKEL-SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGG-GGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHh-hcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            4555555554 344332  235555555555555 555332 55555555555555555444455555555555555555


Q ss_pred             cCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          189 DFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       189 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      .+++..+..+..+++|++|++++|.+++..+..|..+++|+.|++++|++.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            555444455555555555555555555444444555555555555555553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.74  E-value=3e-18  Score=127.12  Aligned_cols=127  Identities=24%  Similarity=0.219  Sum_probs=66.7

Q ss_pred             CCCCEEECCCCCCC-CcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceE
Q 025426          105 SSLQSLNLSCNRLS-GSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTL  183 (253)
Q Consensus       105 ~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L  183 (253)
                      ++++.|++++|.+. +.+|..+..+++|++|++++|.++ .+ .. +..+++|++|++++|.+++.+|..+..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~-~~-~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-SI-AN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-CC-TT-CCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-Cc-hh-hhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            34555555555544 344444445555555555555554 22 22 2445555555555555554444444445555555


Q ss_pred             eeecCcCccc-CCccccCCCCCCeeecccCcCcccCC---hhhcCCCCCCEEecc
Q 025426          184 SLAYNDFSGA-VPREIGNLTKLKVLYIGANRLQGEIP---REFGNLTELEQFSLP  234 (253)
Q Consensus       184 ~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~~~---~~~~~l~~L~~L~l~  234 (253)
                      ++++|.+++. .+..+..+++|++|++++|++++..+   ..+..+++|+.|+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            5555555532 22455556666666666666654443   356666666666654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.73  E-value=5.4e-17  Score=123.84  Aligned_cols=133  Identities=26%  Similarity=0.284  Sum_probs=93.3

Q ss_pred             CCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeee
Q 025426          107 LQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLA  186 (253)
Q Consensus       107 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  186 (253)
                      .+.++++++.+. .+|..+  .++|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus         9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCccc-EeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            456777777766 445433  357777777777777 5666555677777777777777775555566777777777777


Q ss_pred             cCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecc
Q 025426          187 YNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMIL  243 (253)
Q Consensus       187 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p  243 (253)
                      +|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            777776555566777777777777777775555556777777777777777776655

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.73  E-value=2.5e-17  Score=133.72  Aligned_cols=153  Identities=22%  Similarity=0.304  Sum_probs=127.6

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      +++.++++++.+++..  .+..+++|+.|++++|.++ .++ .+..+++|++|++++|.++ .+++  +..+++|++|++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~-~~~~--l~~l~~L~~L~L   92 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQIS-DLSP--LKDLTKLEELSV   92 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCC-CCGG--GTTCSSCCEEEC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccC-CChh--hccCCCCCEEEC
Confidence            4566778888887443  4678899999999999998 455 6889999999999999998 6776  589999999999


Q ss_pred             ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCcee
Q 025426          162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM  241 (253)
Q Consensus       162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  241 (253)
                      ++|.+++ ++. +.. ++|++|++++|.+++.  +.+..+++|++|++++|++++. + .+..+++|+.|++++|++++.
T Consensus        93 ~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~  165 (263)
T 1xeu_A           93 NRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT  165 (263)
T ss_dssp             CSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC
T ss_pred             CCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch
Confidence            9999985 443 233 8999999999999853  4688999999999999999864 3 689999999999999999987


Q ss_pred             cchhhhhcc
Q 025426          242 ILNFLQFYS  250 (253)
Q Consensus       242 ~p~~~~~l~  250 (253)
                        ..+..++
T Consensus       166 --~~l~~l~  172 (263)
T 1xeu_A          166 --GGLTRLK  172 (263)
T ss_dssp             --TTSTTCC
T ss_pred             --HHhccCC
Confidence              4555554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.72  E-value=7.3e-19  Score=147.31  Aligned_cols=169  Identities=19%  Similarity=0.213  Sum_probs=142.4

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCc-CChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGS-IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      .+++.+++++|.+.+..+. +..+++|+.|++++|.+.+. ++..+..+++|++|++++|.+++..+..+ ..+++|++|
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l-~~~~~L~~L  147 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL-AKNSNLVRL  147 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHH-TTCTTCSEE
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHH-hcCCCCCEE
Confidence            5688999999998866655 56789999999999998755 77788899999999999999986666666 779999999


Q ss_pred             EeecC-cCCCC-CCccCCCCCCcceEeeecC-cCccc-CCccccCCC-CCCeeecccC--cCc-ccCChhhcCCCCCCEE
Q 025426          160 SLSLN-MFHGG-IPSTLSNCTYLRTLSLAYN-DFSGA-VPREIGNLT-KLKVLYIGAN--RLQ-GEIPREFGNLTELEQF  231 (253)
Q Consensus       160 ~l~~n-~~~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~l~~l~-~L~~L~l~~n--~l~-~~~~~~~~~l~~L~~L  231 (253)
                      ++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++|  .++ +.++..+..+++|+.|
T Consensus       148 ~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L  227 (336)
T 2ast_B          148 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL  227 (336)
T ss_dssp             ECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEE
T ss_pred             ECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEE
Confidence            99999 67652 5666788999999999999 88854 567788889 9999999999  555 4567788899999999


Q ss_pred             eccCCC-Cceecchhhhhccc
Q 025426          232 SLPTNN-LQVMILNFLQFYSS  251 (253)
Q Consensus       232 ~l~~n~-l~~~~p~~~~~l~~  251 (253)
                      ++++|. +++..+..+..+++
T Consensus       228 ~l~~~~~l~~~~~~~l~~l~~  248 (336)
T 2ast_B          228 DLSDSVMLKNDCFQEFFQLNY  248 (336)
T ss_dssp             ECTTCTTCCGGGGGGGGGCTT
T ss_pred             eCCCCCcCCHHHHHHHhCCCC
Confidence            999999 78777777776653

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.72  E-value=8.4e-18  Score=124.68  Aligned_cols=128  Identities=20%  Similarity=0.185  Sum_probs=111.7

Q ss_pred             CeEEEEEeCCCCcc-ccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           81 HRVTVLNISSLNLR-GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        81 ~~l~~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      ++++.|++++|.+. +.+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|.+++.+|..+ ..+++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~-~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA-EKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH-HHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh-hhCCCCCEE
Confidence            57899999999998 78888889999999999999999855  778899999999999999995566654 779999999


Q ss_pred             EeecCcCCCC-CCccCCCCCCcceEeeecCcCcccCC---ccccCCCCCCeeeccc
Q 025426          160 SLSLNMFHGG-IPSTLSNCTYLRTLSLAYNDFSGAVP---REIGNLTKLKVLYIGA  211 (253)
Q Consensus       160 ~l~~n~~~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~l~~  211 (253)
                      ++++|.+++. .+..+..+++|++|++++|.+++..+   ..+..+++|++|++++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            9999999853 34778999999999999999996655   4788899999999863

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.72  E-value=2.2e-17  Score=147.38  Aligned_cols=143  Identities=26%  Similarity=0.367  Sum_probs=80.4

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      +++.|++++|.++ .+|   ..+++|+.|++++|.+++ +|. +..  +|++|++++|.++ .+|.    .+++|++|++
T Consensus        81 ~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~L  147 (571)
T 3cvr_A           81 QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYINA  147 (571)
T ss_dssp             TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEEC
T ss_pred             CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEeC
Confidence            4555555555555 333   234555555555555553 444 332  5666666666665 3544    3456666666


Q ss_pred             ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCC-------CEEecc
Q 025426          162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL-------EQFSLP  234 (253)
Q Consensus       162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-------~~L~l~  234 (253)
                      ++|.+++ +|.   .+++|++|++++|.+++ +|. +.  ++|+.|++++|.++ .+|. +..  +|       +.|+++
T Consensus       148 s~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls  215 (571)
T 3cvr_A          148 DNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCR  215 (571)
T ss_dssp             CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECC
T ss_pred             CCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecC
Confidence            6666653 443   34566777777777664 454 44  67777777777776 4454 433  55       777777


Q ss_pred             CCCCceecchhhhhcc
Q 025426          235 TNNLQVMILNFLQFYS  250 (253)
Q Consensus       235 ~n~l~~~~p~~~~~l~  250 (253)
                      +|.|+. +|..+..++
T Consensus       216 ~N~l~~-lp~~l~~l~  230 (571)
T 3cvr_A          216 ENRITH-IPENILSLD  230 (571)
T ss_dssp             SSCCCC-CCGGGGGSC
T ss_pred             CCccee-cCHHHhcCC
Confidence            777774 444444444

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=8.6e-19  Score=149.89  Aligned_cols=167  Identities=18%  Similarity=0.284  Sum_probs=104.6

Q ss_pred             CCeEEEEEeCCCCccc----cCCccCCCCCCCCEEECCCCCCCCcCChhh----hcc---------CCCCEEEccCCCCc
Q 025426           80 SHRVTVLNISSLNLRG----TIPSQLGNLSSLQSLNLSCNRLSGSIPSTI----FTI---------YTLKNVSLGKNKLS  142 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~~l---------~~L~~L~l~~n~l~  142 (253)
                      .++++.|++++|.+.+    .++..+..+++|+.|++++|.+....+..+    ..+         ++|++|++++|.++
T Consensus        93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            3567777777777765    355556667777777777777653333333    233         67777777777775


Q ss_pred             -CcCch--hHhcCCCCccEEEeecCcCCC-----CCCccCCCCCCcceEeeecCcCc----ccCCccccCCCCCCeeecc
Q 025426          143 -GQIPT--NICSNLPFLEFLSLSLNMFHG-----GIPSTLSNCTYLRTLSLAYNDFS----GAVPREIGNLTKLKVLYIG  210 (253)
Q Consensus       143 -~~~~~--~~~~~l~~L~~L~l~~n~~~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~p~~l~~l~~L~~L~l~  210 (253)
                       +.++.  ..+..+++|++|++++|.++.     ..+..+..+++|++|++++|.++    ..+|..+..+++|++|+++
T Consensus       173 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~  252 (386)
T 2ca6_A          173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLN  252 (386)
T ss_dssp             GGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECT
T ss_pred             cHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECC
Confidence             23331  122456677777777777652     22335666777777777777774    3456666667777777777


Q ss_pred             cCcCccc----CChhhcC--CCCCCEEeccCCCCce----ecchhh
Q 025426          211 ANRLQGE----IPREFGN--LTELEQFSLPTNNLQV----MILNFL  246 (253)
Q Consensus       211 ~n~l~~~----~~~~~~~--l~~L~~L~l~~n~l~~----~~p~~~  246 (253)
                      +|.+++.    ++..+..  +++|+.|++++|.+++    .+|..+
T Consensus       253 ~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          253 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             TCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             CCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence            7777654    3455533  6777777777777776    355544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.71  E-value=2.4e-16  Score=137.70  Aligned_cols=155  Identities=22%  Similarity=0.248  Sum_probs=100.1

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchh----------
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTN----------  148 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~----------  148 (253)
                      ..++++.|++++|.+++. +  +..+++|++|++++|.+++ ++  +..+++|++|++++|.+++ ++-.          
T Consensus        83 ~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~-l~l~~l~~L~~L~l  155 (457)
T 3bz5_A           83 QNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTE-IDVSHNTQLTELDC  155 (457)
T ss_dssp             TCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSC-CCCTTCTTCCEEEC
T ss_pred             cCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCccce-eccccCCcCCEEEC
Confidence            345677777777777643 2  6667777777777777664 33  5666666666666666652 3210          


Q ss_pred             ---------HhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCC
Q 025426          149 ---------ICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP  219 (253)
Q Consensus       149 ---------~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~  219 (253)
                               .+..+++|++|++++|.+++ +|  +..+++|+.|++++|.+++.   .+..+++|++|++++|++++ +|
T Consensus       156 ~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip  228 (457)
T 3bz5_A          156 HLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID  228 (457)
T ss_dssp             TTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC
T ss_pred             CCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC
Confidence                     02344556666666666653 33  55666677777777766643   36677778888888888875 44


Q ss_pred             hhhcCCCCCCEEeccCCCCceecchhhhhc
Q 025426          220 REFGNLTELEQFSLPTNNLQVMILNFLQFY  249 (253)
Q Consensus       220 ~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  249 (253)
                        +..+++|+.|++++|++++.++..+..+
T Consensus       229 --~~~l~~L~~L~l~~N~l~~~~~~~l~~L  256 (457)
T 3bz5_A          229 --VTPLTQLTYFDCSVNPLTELDVSTLSKL  256 (457)
T ss_dssp             --CTTCTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred             --ccccCCCCEEEeeCCcCCCcCHHHCCCC
Confidence              7778888888888888887776655544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.69  E-value=3.3e-16  Score=136.86  Aligned_cols=143  Identities=22%  Similarity=0.263  Sum_probs=84.7

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ++++.|++++|.+++. +  +..+++|++|++++|.+++. +  +..+++|++|++++|.++ .++   +..+++|++|+
T Consensus        64 ~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~-~l~---~~~l~~L~~L~  133 (457)
T 3bz5_A           64 TGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLT-KLD---VSQNPLLTYLN  133 (457)
T ss_dssp             TTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCS-CCC---CTTCTTCCEEE
T ss_pred             CCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCC-eec---CCCCCcCCEEE
Confidence            4556666666665542 2  55556666666666666532 2  555666666666666665 343   25556666666


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +++|.+++.   .+..+++|++|++++|...+.+  .+..+++|++|++++|.+++ +|  +..+++|+.|++++|++++
T Consensus       134 l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~  205 (457)
T 3bz5_A          134 CARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITK  205 (457)
T ss_dssp             CTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSC
T ss_pred             CCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCCe
Confidence            666666542   2555666666666666433333  35566677777777777764 33  6667777777777777766


Q ss_pred             e
Q 025426          241 M  241 (253)
Q Consensus       241 ~  241 (253)
                      .
T Consensus       206 ~  206 (457)
T 3bz5_A          206 L  206 (457)
T ss_dssp             C
T ss_pred             e
Confidence            5

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.69  E-value=5.4e-18  Score=144.89  Aligned_cols=168  Identities=18%  Similarity=0.259  Sum_probs=129.1

Q ss_pred             CCCeEEEEEeCCCCc---cccCCccC-------CCCCCCCEEECCCCCCCC----cCChhhhccCCCCEEEccCCCCcCc
Q 025426           79 HSHRVTVLNISSLNL---RGTIPSQL-------GNLSSLQSLNLSCNRLSG----SIPSTIFTIYTLKNVSLGKNKLSGQ  144 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l---~~~~~~~~-------~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~  144 (253)
                      ..++++.|++++|.+   .+.+|..+       ..+++|+.|++++|.+..    .++..+..+++|++|++++|.+++.
T Consensus        58 ~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~  137 (386)
T 2ca6_A           58 SKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQ  137 (386)
T ss_dssp             TCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHH
T ss_pred             hCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHH
Confidence            346788999998644   44555444       678899999999999886    4677788899999999999998633


Q ss_pred             CchhHh---cCC---------CCccEEEeecCcCC-CCCC---ccCCCCCCcceEeeecCcCcc-----cCCccccCCCC
Q 025426          145 IPTNIC---SNL---------PFLEFLSLSLNMFH-GGIP---STLSNCTYLRTLSLAYNDFSG-----AVPREIGNLTK  203 (253)
Q Consensus       145 ~~~~~~---~~l---------~~L~~L~l~~n~~~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~p~~l~~l~~  203 (253)
                      .+..+.   ..+         ++|++|++++|.++ ..++   ..+..+++|++|++++|+++.     ..+..+..+++
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~  217 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE  217 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTT
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCC
Confidence            232221   233         88999999999987 3344   456678899999999999873     23447788899


Q ss_pred             CCeeecccCcCc----ccCChhhcCCCCCCEEeccCCCCcee----cchhh
Q 025426          204 LKVLYIGANRLQ----GEIPREFGNLTELEQFSLPTNNLQVM----ILNFL  246 (253)
Q Consensus       204 L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~l~~n~l~~~----~p~~~  246 (253)
                      |++|++++|.++    +.+|..+..+++|+.|++++|.+++.    +|..+
T Consensus       218 L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l  268 (386)
T 2ca6_A          218 LKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAF  268 (386)
T ss_dssp             CCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHH
T ss_pred             ccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHH
Confidence            999999999986    46788889999999999999999876    45554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.69  E-value=6.9e-18  Score=143.14  Aligned_cols=166  Identities=25%  Similarity=0.247  Sum_probs=102.0

Q ss_pred             eEEEEEeCCCCccccCCccCCCC-----CCCCEEECCCCCCCCcCChhhhc----c-CCCCEEEccCCCCcCcCchhH--
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNL-----SSLQSLNLSCNRLSGSIPSTIFT----I-YTLKNVSLGKNKLSGQIPTNI--  149 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l-----~~L~~L~l~~n~l~~~~~~~l~~----l-~~L~~L~l~~n~l~~~~~~~~--  149 (253)
                      ++++|++++|.+.+..+..+..+     ++|++|++++|.+++..+..+..    + ++|++|++++|.+++..+..+  
T Consensus        52 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  131 (362)
T 3goz_A           52 SVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQ  131 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHH
T ss_pred             ceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHH
Confidence            57777777777765555544443     67777777777776555544433    2 677777777777763333222  


Q ss_pred             -hcC-CCCccEEEeecCcCCCCCC----ccCCCCC-CcceEeeecCcCcccCCccc----cCC-CCCCeeecccCcCccc
Q 025426          150 -CSN-LPFLEFLSLSLNMFHGGIP----STLSNCT-YLRTLSLAYNDFSGAVPREI----GNL-TKLKVLYIGANRLQGE  217 (253)
Q Consensus       150 -~~~-l~~L~~L~l~~n~~~~~~~----~~~~~l~-~L~~L~L~~n~l~~~~p~~l----~~l-~~L~~L~l~~n~l~~~  217 (253)
                       +.. ..+|++|++++|.+++..+    ..+...+ +|++|++++|.+++..+..+    ... ++|++|++++|.+++.
T Consensus       132 ~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~  211 (362)
T 3goz_A          132 AFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLK  211 (362)
T ss_dssp             HHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             HHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence             122 2477777777777764332    2233444 77777777777775555433    333 4788888888887753


Q ss_pred             ----CChhhcC-CCCCCEEeccCCCCceecchhhh
Q 025426          218 ----IPREFGN-LTELEQFSLPTNNLQVMILNFLQ  247 (253)
Q Consensus       218 ----~~~~~~~-l~~L~~L~l~~n~l~~~~p~~~~  247 (253)
                          ++..+.. .++|+.|++++|.+++..+..+.
T Consensus       212 ~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  246 (362)
T 3goz_A          212 SYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLK  246 (362)
T ss_dssp             CHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHH
T ss_pred             HHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHH
Confidence                3444544 35788888888888776664443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1e-18  Score=156.36  Aligned_cols=158  Identities=20%  Similarity=0.189  Sum_probs=131.0

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCC-------------CCCcCChhhhc--------------------
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNR-------------LSGSIPSTIFT--------------------  127 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-------------l~~~~~~~l~~--------------------  127 (253)
                      ++++.|++++|.+. .+|..+..+++|+.|++++|.             ..+..|..+..                    
T Consensus       349 ~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~  427 (567)
T 1dce_A          349 EQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRS  427 (567)
T ss_dssp             TTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             ccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhh
Confidence            34557778888876 778888888888888886653             33333322211                    


Q ss_pred             ------------cCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCC
Q 025426          128 ------------IYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP  195 (253)
Q Consensus       128 ------------l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p  195 (253)
                                  ...|++|++++|.++ .+|.  +..+++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|
T Consensus       428 l~l~~n~i~~l~~~~L~~L~Ls~n~l~-~lp~--~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp  502 (567)
T 1dce_A          428 KFLLENSVLKMEYADVRVLHLAHKDLT-VLCH--LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD  502 (567)
T ss_dssp             HHHHHHHHHHHHHTTCSEEECTTSCCS-SCCC--GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG
T ss_pred             hhhhcccccccCccCceEEEecCCCCC-CCcC--ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc
Confidence                        125889999999998 6886  488999999999999998 789999999999999999999995 66


Q ss_pred             ccccCCCCCCeeecccCcCcccC-ChhhcCCCCCCEEeccCCCCceecchh
Q 025426          196 REIGNLTKLKVLYIGANRLQGEI-PREFGNLTELEQFSLPTNNLQVMILNF  245 (253)
Q Consensus       196 ~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~p~~  245 (253)
                       .+..+++|++|++++|.+++.. |..++.+++|+.|++++|++++.+|..
T Consensus       503 -~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~  552 (567)
T 1dce_A          503 -GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ  552 (567)
T ss_dssp             -GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred             -ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence             8999999999999999999776 999999999999999999999887743

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.68  E-value=4e-16  Score=140.81  Aligned_cols=89  Identities=24%  Similarity=0.229  Sum_probs=66.0

Q ss_pred             CCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEec
Q 025426          154 PFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSL  233 (253)
Q Consensus       154 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  233 (253)
                      ++|++|++++|.+++ +|   ..+++|++|++++|.++ .+|.   .+++|+.|++++|.++ .+|..+..+++|+.|++
T Consensus       221 ~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L  291 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNL  291 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEEC
T ss_pred             CCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEe
Confidence            445555555555552 33   33466777777777776 4444   4578899999999988 77888999999999999


Q ss_pred             cCCCCceecchhhhhccc
Q 025426          234 PTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       234 ~~n~l~~~~p~~~~~l~~  251 (253)
                      ++|++++.+|..++.+++
T Consensus       292 ~~N~l~~~~~~~l~~L~~  309 (622)
T 3g06_A          292 EGNPLSERTLQALREITS  309 (622)
T ss_dssp             CSCCCCHHHHHHHHHHHH
T ss_pred             cCCCCCCcCHHHHHhccc
Confidence            999999999998887653

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.67  E-value=5.5e-17  Score=123.74  Aligned_cols=130  Identities=15%  Similarity=0.147  Sum_probs=62.6

Q ss_pred             CCCCCCEEECCCCCCCCcCChhhhccC-CCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcc
Q 025426          103 NLSSLQSLNLSCNRLSGSIPSTIFTIY-TLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR  181 (253)
Q Consensus       103 ~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  181 (253)
                      ...+|+.|++++|.++ .++. +..+. +|++|++++|.++ .+ +. +..+++|++|++++|.+++..+..+..+++|+
T Consensus        17 ~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~-~~-~~-l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIR-KL-DG-FPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             CTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCC-EE-CC-CCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             CcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCC-cc-cc-cccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            3444555555555554 2222 22222 5555555555554 22 11 24455555555555555432223334555555


Q ss_pred             eEeeecCcCcccCCc--cccCCCCCCeeecccCcCcccCCh----hhcCCCCCCEEeccCCCCc
Q 025426          182 TLSLAYNDFSGAVPR--EIGNLTKLKVLYIGANRLQGEIPR----EFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       182 ~L~L~~n~l~~~~p~--~l~~l~~L~~L~l~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~  239 (253)
                      +|++++|.++ .+|.  .+..+++|++|++++|+++ ..|.    .+..+++|+.||+++|...
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            5555555554 2333  4455555555555555554 2333    2555556666666555543

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.66  E-value=3.4e-17  Score=138.91  Aligned_cols=162  Identities=24%  Similarity=0.283  Sum_probs=129.2

Q ss_pred             CCeEEEEEeCCCCccccCC----ccCCCCC-CCCEEECCCCCCCCcCChhhhcc-----CCCCEEEccCCCCcCcCchhH
Q 025426           80 SHRVTVLNISSLNLRGTIP----SQLGNLS-SLQSLNLSCNRLSGSIPSTIFTI-----YTLKNVSLGKNKLSGQIPTNI  149 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~~~~~----~~~~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~  149 (253)
                      ..+++.|++++|.+++..+    ..+..++ +|++|++++|.+.+..+..+..+     ++|++|++++|.+++..+..+
T Consensus        21 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           21 PHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            3569999999999987666    6677888 89999999999997777777775     999999999999985555433


Q ss_pred             ---hcCC-CCccEEEeecCcCCCCCCccC----CC-CCCcceEeeecCcCcccCC----ccccCCC-CCCeeecccCcCc
Q 025426          150 ---CSNL-PFLEFLSLSLNMFHGGIPSTL----SN-CTYLRTLSLAYNDFSGAVP----REIGNLT-KLKVLYIGANRLQ  215 (253)
Q Consensus       150 ---~~~l-~~L~~L~l~~n~~~~~~~~~~----~~-l~~L~~L~L~~n~l~~~~p----~~l~~l~-~L~~L~l~~n~l~  215 (253)
                         +..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+++..+    ..+...+ +|++|++++|.++
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence               2344 899999999999986655443    33 3699999999999986444    3345555 9999999999998


Q ss_pred             ccCChh----hcCC-CCCCEEeccCCCCcee
Q 025426          216 GEIPRE----FGNL-TELEQFSLPTNNLQVM  241 (253)
Q Consensus       216 ~~~~~~----~~~l-~~L~~L~l~~n~l~~~  241 (253)
                      +..+..    +..+ ++|+.|++++|.+++.
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~  211 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLSANLLGLK  211 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGS
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECCCCCCChh
Confidence            776654    4455 5999999999999873

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.66  E-value=2e-16  Score=120.56  Aligned_cols=129  Identities=19%  Similarity=0.257  Sum_probs=111.1

Q ss_pred             CeEEEEEeCCCCccccCCccCCCC-CCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNL-SSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFL  159 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  159 (253)
                      .+++.|++++|+++ .++. +..+ ++|+.|++++|.+++.  ..+..+++|++|++++|.++ .+|+.++..+++|++|
T Consensus        19 ~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L   93 (176)
T 1a9n_A           19 VRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTEL   93 (176)
T ss_dssp             TSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEE
T ss_pred             CCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEE
Confidence            67999999999998 4454 4444 4999999999999854  67889999999999999998 7787777889999999


Q ss_pred             EeecCcCCCCCCc--cCCCCCCcceEeeecCcCcccCCcc----ccCCCCCCeeecccCcCcc
Q 025426          160 SLSLNMFHGGIPS--TLSNCTYLRTLSLAYNDFSGAVPRE----IGNLTKLKVLYIGANRLQG  216 (253)
Q Consensus       160 ~l~~n~~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~l~~n~l~~  216 (253)
                      ++++|.++ .+|.  .+..+++|++|++++|.+. ..|..    +..+++|++|++++|....
T Consensus        94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999996 5565  7889999999999999998 55654    8889999999999998763

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.65  E-value=7.3e-16  Score=130.09  Aligned_cols=158  Identities=18%  Similarity=0.119  Sum_probs=111.6

Q ss_pred             EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE-EEee
Q 025426           84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF-LSLS  162 (253)
Q Consensus        84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-L~l~  162 (253)
                      ++++-++++++ .+|..+.  +++++|++++|+++...+.+|.++++|++|++++|.+.+.+|...|.+++++++ +.+.
T Consensus        12 ~~v~C~~~~Lt-~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~   88 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   88 (350)
T ss_dssp             TEEEEESTTCC-SCCTTCC--TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred             CEEEecCCCCC-ccCcCcC--CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence            36788889988 7777663  689999999999995555678999999999999999876788888888988775 5667


Q ss_pred             cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeeccc-CcCcccCChhhcCCC-CCCEEeccCCCCce
Q 025426          163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGA-NRLQGEIPREFGNLT-ELEQFSLPTNNLQV  240 (253)
Q Consensus       163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~  240 (253)
                      .|+++...|..|..+++|++|++++|.++...+..+....++..+++.+ +.+....+..|..+. .++.|++++|.++.
T Consensus        89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~  168 (350)
T 4ay9_X           89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE  168 (350)
T ss_dssp             ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred             CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence            7999877788899999999999999998855444443444444444433 233322223333332 34444444444444


Q ss_pred             ecch
Q 025426          241 MILN  244 (253)
Q Consensus       241 ~~p~  244 (253)
                      +++.
T Consensus       169 i~~~  172 (350)
T 4ay9_X          169 IHNS  172 (350)
T ss_dssp             ECTT
T ss_pred             CChh
Confidence            4433

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.64  E-value=3.8e-19  Score=138.35  Aligned_cols=150  Identities=24%  Similarity=0.332  Sum_probs=117.3

Q ss_pred             EEEEEeCCCCccccCCc------cCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCc
Q 025426           83 VTVLNISSLNLRGTIPS------QLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL  156 (253)
Q Consensus        83 l~~L~l~~~~l~~~~~~------~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  156 (253)
                      ++.++++++.+.+..|.      .+..+++|+.|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+ ..+++|
T Consensus        20 l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~-~~~~~L   95 (198)
T 1ds9_A           20 VVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLD-AVADTL   95 (198)
T ss_dssp             CCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHH-HHHHHC
T ss_pred             ccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchh-hcCCcC
Confidence            34444444444444443      78889999999999999885 66 8889999999999999998 788755 667889


Q ss_pred             cEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCC-ccccCCCCCCeeecccCcCcccCCh----------hhcCC
Q 025426          157 EFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVP-REIGNLTKLKVLYIGANRLQGEIPR----------EFGNL  225 (253)
Q Consensus       157 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~----------~~~~l  225 (253)
                      ++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|++|++++|++.+..|.          .+..+
T Consensus        96 ~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l  173 (198)
T 1ds9_A           96 EELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             SEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred             CEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence            999999999985 44 57788899999999999985332 4688899999999999998766554          37889


Q ss_pred             CCCCEEeccCCCCce
Q 025426          226 TELEQFSLPTNNLQV  240 (253)
Q Consensus       226 ~~L~~L~l~~n~l~~  240 (253)
                      ++|+.||  +|.++.
T Consensus       174 ~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          174 PNLKKLD--GMPVDV  186 (198)
T ss_dssp             SSCSEEC--CGGGTT
T ss_pred             CCcEEEC--CcccCH
Confidence            9999887  666653

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.63  E-value=3.5e-16  Score=141.17  Aligned_cols=95  Identities=27%  Similarity=0.312  Sum_probs=57.4

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ++++.|++++|.++ .+|.   .+++|++|++++|.++ .+|.   .+++|++|++++|.++ .+|.    .+.+|++|+
T Consensus        61 ~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~  127 (622)
T 3g06_A           61 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLW  127 (622)
T ss_dssp             TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEE
T ss_pred             CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEE
Confidence            45666666666665 3443   3456666666666665 3444   4566666666666666 4544    345666777


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcc
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG  192 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  192 (253)
                      +++|.++. +|..   +++|++|++++|.+++
T Consensus       128 L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~  155 (622)
T 3g06_A          128 IFGNQLTS-LPVL---PPGLQELSVSDNQLAS  155 (622)
T ss_dssp             CCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred             CCCCCCCc-CCCC---CCCCCEEECcCCcCCC
Confidence            77776663 4432   3667777777777763

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.63  E-value=2.1e-15  Score=114.39  Aligned_cols=105  Identities=22%  Similarity=0.239  Sum_probs=61.4

Q ss_pred             CCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeee
Q 025426          107 LQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLA  186 (253)
Q Consensus       107 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  186 (253)
                      .+.+++++|.++ .+|..+  .++|++|++++|.++ .+++..|..+++|++|++++|.+++..+..|..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            355666666665 345433  256666666666666 4433333566666666666666664444455666666666666


Q ss_pred             cCcCcccCCccccCCCCCCeeecccCcCc
Q 025426          187 YNDFSGAVPREIGNLTKLKVLYIGANRLQ  215 (253)
Q Consensus       187 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  215 (253)
                      +|++++..+..+..+++|++|++++|+++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            66666444445556666666666666655

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.62  E-value=5.3e-15  Score=129.06  Aligned_cols=120  Identities=28%  Similarity=0.425  Sum_probs=55.7

Q ss_pred             CCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEe
Q 025426          105 SSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLS  184 (253)
Q Consensus       105 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  184 (253)
                      ++|++|++++|.+++ +| .+..+++|++|++++|.++ .+|..    ..+|++|++++|.+++ +| .+..+++|++|+
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEE
Confidence            345555555555553 44 3555555555555555554 34332    1345555555555543 33 345555555555


Q ss_pred             eecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCc
Q 025426          185 LAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       185 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      +++|.+++ +|...   ++|++|++++|.++ .+| .++.+++|+.|++++|+++
T Consensus       202 l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~  250 (454)
T 1jl5_A          202 ADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK  250 (454)
T ss_dssp             CCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred             CCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence            55555442 22211   24444444444444 333 2444444444444444444

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.61  E-value=7.4e-15  Score=128.14  Aligned_cols=121  Identities=27%  Similarity=0.428  Sum_probs=87.2

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      +++++|++++|.+++ +| .+..+++|++|++++|.+++ +|..   ..+|++|++++|.++ .+|.  +..+++|++|+
T Consensus       131 ~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~-~l~~--~~~l~~L~~L~  201 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE-ELPE--LQNLPFLTAIY  201 (454)
T ss_dssp             TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCC--CTTCTTCCEEE
T ss_pred             CCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCC-cCcc--ccCCCCCCEEE
Confidence            578899999998885 66 58899999999999999884 5543   258888888888887 4663  47788888888


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG  216 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  216 (253)
                      +++|.+++ +|...   ++|++|++++|.++ .+| .+..+++|++|++++|++++
T Consensus       202 l~~N~l~~-l~~~~---~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~  251 (454)
T 1jl5_A          202 ADNNSLKK-LPDLP---LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT  251 (454)
T ss_dssp             CCSSCCSS-CCCCC---TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS
T ss_pred             CCCCcCCc-CCCCc---CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc
Confidence            88887764 33321   46667777777666 445 36666666666666666653

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.61  E-value=4.2e-17  Score=142.21  Aligned_cols=110  Identities=24%  Similarity=0.207  Sum_probs=49.7

Q ss_pred             eEEEEEeCCCCccccCCcc-CCCCCCCCEEECCCCCCCC----cCChhhhccCCCCEEEccCCCCcCcCchhHhcCCC--
Q 025426           82 RVTVLNISSLNLRGTIPSQ-LGNLSSLQSLNLSCNRLSG----SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLP--  154 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~-~~~l~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~--  154 (253)
                      +++.|+++++++++..... +..+++|+.|++++|.+..    .++..+..+++|++|++++|.+.+..+..++..+.  
T Consensus         4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~   83 (461)
T 1z7x_W            4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   83 (461)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhC
Confidence            4555555555554322221 3344455555555555442    12333444455555555555554222333333333  


Q ss_pred             --CccEEEeecCcCCC----CCCccCCCCCCcceEeeecCcCc
Q 025426          155 --FLEFLSLSLNMFHG----GIPSTLSNCTYLRTLSLAYNDFS  191 (253)
Q Consensus       155 --~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~  191 (253)
                        +|++|++++|.++.    .++..+..+++|++|++++|.++
T Consensus        84 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  126 (461)
T 1z7x_W           84 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  126 (461)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCc
Confidence              35555555555442    22444445555555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.61  E-value=4e-15  Score=133.10  Aligned_cols=122  Identities=20%  Similarity=0.256  Sum_probs=107.5

Q ss_pred             CCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEee
Q 025426          106 SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSL  185 (253)
Q Consensus       106 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L  185 (253)
                      .|+.|++++|.+++ +|. +..+++|++|++++|.++ .+|..+ ..+++|++|++++|.+++ +| .+..+++|++|++
T Consensus       442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~-~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALEN-VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEEC
T ss_pred             CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhh-hcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEEC
Confidence            58899999999985 676 999999999999999999 999876 889999999999999985 66 7999999999999


Q ss_pred             ecCcCcccC-CccccCCCCCCeeecccCcCcccCCh---hhcCCCCCCEEec
Q 025426          186 AYNDFSGAV-PREIGNLTKLKVLYIGANRLQGEIPR---EFGNLTELEQFSL  233 (253)
Q Consensus       186 ~~n~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~~~---~~~~l~~L~~L~l  233 (253)
                      ++|.+++.. |..+..+++|+.|++++|++++.+|.   .+..+++|+.|++
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            999999776 99999999999999999999865442   3455899999874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.60  E-value=4.6e-15  Score=112.88  Aligned_cols=104  Identities=21%  Similarity=0.259  Sum_probs=68.2

Q ss_pred             CEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeec
Q 025426          108 QSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAY  187 (253)
Q Consensus       108 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~  187 (253)
                      +.+++++|.+. .+|..+.  ++|++|++++|.+. .+++..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            56777777775 5555443  66777777777776 44444446677777777777777654445566677777777777


Q ss_pred             CcCcccCCccccCCCCCCeeecccCcCc
Q 025426          188 NDFSGAVPREIGNLTKLKVLYIGANRLQ  215 (253)
Q Consensus       188 n~l~~~~p~~l~~l~~L~~L~l~~n~l~  215 (253)
                      |++++..+..+..+++|++|++++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            7777444444666777777777777765

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.60  E-value=1.1e-17  Score=130.08  Aligned_cols=135  Identities=26%  Similarity=0.363  Sum_probs=113.0

Q ss_pred             CCCCCEEECCCCCCCCcCCh------hhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCC
Q 025426          104 LSSLQSLNLSCNRLSGSIPS------TIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNC  177 (253)
Q Consensus       104 l~~L~~L~l~~n~l~~~~~~------~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  177 (253)
                      ...++.++++.+.+.+..|.      .+..+++|++|++++|.++ .+| .+ ..+++|++|++++|.++ .+|..+..+
T Consensus        17 ~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~-~l~-~~-~~l~~L~~L~l~~n~l~-~l~~~~~~~   92 (198)
T 1ds9_A           17 RKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE-KIS-SL-SGMENLRILSLGRNLIK-KIENLDAVA   92 (198)
T ss_dssp             TTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEES-CCC-CH-HHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred             cccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCc-ccc-cc-ccCCCCCEEECCCCCcc-cccchhhcC
Confidence            44566666666666655555      8999999999999999998 677 44 78999999999999998 677777778


Q ss_pred             CCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCC-hhhcCCCCCCEEeccCCCCceecch
Q 025426          178 TYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP-REFGNLTELEQFSLPTNNLQVMILN  244 (253)
Q Consensus       178 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~  244 (253)
                      ++|++|++++|.+++ +| .+..+++|++|++++|.+++..+ ..+..+++|+.|++++|++.+.+|.
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            999999999999985 44 67888999999999999985332 5789999999999999999888765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.59  E-value=7.9e-17  Score=140.47  Aligned_cols=161  Identities=20%  Similarity=0.201  Sum_probs=103.4

Q ss_pred             CeEEEEEeCCCCccccC-----CccCCCCCCCCEEECCCCCCCCc----CChhhhccCCCCEEEccCCCCcCcCchhH--
Q 025426           81 HRVTVLNISSLNLRGTI-----PSQLGNLSSLQSLNLSCNRLSGS----IPSTIFTIYTLKNVSLGKNKLSGQIPTNI--  149 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~-----~~~~~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~~--  149 (253)
                      ++++.|++++|.+.+..     +..+..+++|+.|++++|.++..    ++..+..+++|++|++++|.+.+..+..+  
T Consensus       227 ~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  306 (461)
T 1z7x_W          227 ASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCE  306 (461)
T ss_dssp             TTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred             CCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHH
Confidence            45666666666655321     22223456777777777776633    45556667777777777777753322222  


Q ss_pred             --hcCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCcCcccCCccccC-----CCCCCeeecccCcCcc--
Q 025426          150 --CSNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYNDFSGAVPREIGN-----LTKLKVLYIGANRLQG--  216 (253)
Q Consensus       150 --~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~-----l~~L~~L~l~~n~l~~--  216 (253)
                        ....++|++|++++|.+++.    ++..+..+++|++|++++|.+++..+..+..     .++|++|++++|.+++  
T Consensus       307 ~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~  386 (461)
T 1z7x_W          307 TLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSS  386 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHH
T ss_pred             HhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhh
Confidence              12235777777777777643    3445556678888888888877554443332     5678888888888875  


Q ss_pred             --cCChhhcCCCCCCEEeccCCCCcee
Q 025426          217 --EIPREFGNLTELEQFSLPTNNLQVM  241 (253)
Q Consensus       217 --~~~~~~~~l~~L~~L~l~~n~l~~~  241 (253)
                        .+|..+..+++|++|++++|++++.
T Consensus       387 ~~~l~~~l~~~~~L~~L~l~~N~i~~~  413 (461)
T 1z7x_W          387 CSSLAATLLANHSLRELDLSNNCLGDA  413 (461)
T ss_dssp             HHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred             HHHHHHHHHhCCCccEEECCCCCCCHH
Confidence              5677777788888888888888754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.58  E-value=1e-14  Score=110.56  Aligned_cols=107  Identities=23%  Similarity=0.295  Sum_probs=95.1

Q ss_pred             EEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426           83 VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS  162 (253)
Q Consensus        83 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  162 (253)
                      .+.+++++++++ .+|..+.  ++|+.|++++|.+++..|..+..+++|++|++++|.++ .+++..|..+++|++|+++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECC
Confidence            357889999998 5776553  88999999999999888889999999999999999999 8888877899999999999


Q ss_pred             cCcCCCCCCccCCCCCCcceEeeecCcCccc
Q 025426          163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGA  193 (253)
Q Consensus       163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  193 (253)
                      +|.+++..+..|..+++|++|++++|.+...
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9999976667799999999999999998743

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.58  E-value=3.9e-15  Score=124.54  Aligned_cols=97  Identities=16%  Similarity=0.083  Sum_probs=85.2

Q ss_pred             CCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCC-eeecccCcCcccCChhhcCCCCCCEE
Q 025426          153 LPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLK-VLYIGANRLQGEIPREFGNLTELEQF  231 (253)
Q Consensus       153 l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L  231 (253)
                      +++|+++++++|.++.....+|.++++|+.+++..| ++...+..|.++++|+ .+++.+ .++...+.+|.++++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            678999999999998666678999999999999998 7767778899999999 999988 6765677899999999999


Q ss_pred             eccCCCCceecchhhhhccc
Q 025426          232 SLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       232 ~l~~n~l~~~~p~~~~~l~~  251 (253)
                      ++++|+++.+.+..|.++++
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~  322 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVP  322 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCC
T ss_pred             EeCCCccCccchhhhcCCcc
Confidence            99999999999999988865

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.57  E-value=1.7e-14  Score=109.75  Aligned_cols=105  Identities=24%  Similarity=0.333  Sum_probs=94.5

Q ss_pred             EEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426           84 TVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL  163 (253)
Q Consensus        84 ~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  163 (253)
                      +.++++++++. .+|..+.  ++|+.|++++|.+.+..|..+..+++|++|++++|.++ .+|...|..+++|++|++++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence            58999999997 7777664  89999999999999888889999999999999999999 78888778999999999999


Q ss_pred             CcCCCCCCccCCCCCCcceEeeecCcCcc
Q 025426          164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSG  192 (253)
Q Consensus       164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  192 (253)
                      |.+++..+..|..+++|++|++++|.+..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccc
Confidence            99996656669999999999999999883

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.49  E-value=8.8e-16  Score=130.61  Aligned_cols=169  Identities=18%  Similarity=0.196  Sum_probs=118.0

Q ss_pred             CeEEEEEeCCCCccccCCcc----CC-CCCCCCEEECCCCCCCCcCChhhh-ccCCCCEEEccCCCCcCcCchhHh----
Q 025426           81 HRVTVLNISSLNLRGTIPSQ----LG-NLSSLQSLNLSCNRLSGSIPSTIF-TIYTLKNVSLGKNKLSGQIPTNIC----  150 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~----~~-~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~~~----  150 (253)
                      ..++.|++++|.++......    +. ...+|+.|++++|.+.......+. .+.+|++|++++|.++......+.    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~  151 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL  151 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence            45789999999887433322    22 236889999999988744333333 467889999999988733222221    


Q ss_pred             cCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCcCccc----CCccccCCCCCCeeecccCcCccc----C
Q 025426          151 SNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIGANRLQGE----I  218 (253)
Q Consensus       151 ~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~  218 (253)
                      ...++|++|++++|.++..    ++..+...++|++|++++|.+++.    ++..+...++|++|+|++|.+++.    +
T Consensus       152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l  231 (372)
T 3un9_A          152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL  231 (372)
T ss_dssp             STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred             hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence            2457899999999988642    334456778899999999988753    245566677899999999998753    3


Q ss_pred             ChhhcCCCCCCEEeccCCCCceecchhhhhc
Q 025426          219 PREFGNLTELEQFSLPTNNLQVMILNFLQFY  249 (253)
Q Consensus       219 ~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l  249 (253)
                      ...+...++|++|++++|.|++.-...+..+
T Consensus       232 ~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~  262 (372)
T 3un9_A          232 ARAAREHPSLELLHLYFNELSSEGRQVLRDL  262 (372)
T ss_dssp             HHHHHHCSSCCEEECTTSSCCHHHHHHHHHC
T ss_pred             HHHHHhCCCCCEEeccCCCCCHHHHHHHHHH
Confidence            4455667889999999999887666655543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.42  E-value=7.3e-13  Score=110.69  Aligned_cols=103  Identities=17%  Similarity=0.177  Sum_probs=93.6

Q ss_pred             cCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcc-eEeeecCcCcccCCccccCCCCCCe
Q 025426          128 IYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR-TLSLAYNDFSGAVPREIGNLTKLKV  206 (253)
Q Consensus       128 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~-~L~L~~n~l~~~~p~~l~~l~~L~~  206 (253)
                      +++|+++++++|.++ .+++..|.++.+|+++++.+| ++...+.+|.++++|+ .+++.. .++...+..|.++++|+.
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcc-eecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            679999999999998 999999999999999999998 7756668899999999 999998 777677889999999999


Q ss_pred             eecccCcCcccCChhhcCCCCCCEEec
Q 025426          207 LYIGANRLQGEIPREFGNLTELEQFSL  233 (253)
Q Consensus       207 L~l~~n~l~~~~~~~~~~l~~L~~L~l  233 (253)
                      +++.+|.++...+.+|.++++|+.++.
T Consensus       302 l~l~~n~i~~I~~~aF~~~~~L~~ly~  328 (329)
T 3sb4_A          302 VLATGDKITTLGDELFGNGVPSKLIYK  328 (329)
T ss_dssp             EEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred             EEeCCCccCccchhhhcCCcchhhhcc
Confidence            999999998777889999999999874

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.42  E-value=6.1e-13  Score=111.84  Aligned_cols=103  Identities=17%  Similarity=0.213  Sum_probs=81.3

Q ss_pred             EEECCCC-CCCCcCChhhhccCCCCEEEccC-CCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeee
Q 025426          109 SLNLSCN-RLSGSIPSTIFTIYTLKNVSLGK-NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLA  186 (253)
Q Consensus       109 ~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  186 (253)
                      .++.+++ .++ .+|. +..+.+|++|+|++ |.+. .+++..|..+.+|++|+|++|.+++..|..|..+++|++|+|+
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4677777 777 5777 88888888899886 8887 6666666888888888888888887777788888888888888


Q ss_pred             cCcCcccCCccccCCCCCCeeecccCcCc
Q 025426          187 YNDFSGAVPREIGNLTKLKVLYIGANRLQ  215 (253)
Q Consensus       187 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  215 (253)
                      +|++++..+..+..++ |+.|++.+|++.
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            8888855555555544 888888888876

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.37  E-value=1.6e-12  Score=109.25  Aligned_cols=103  Identities=20%  Similarity=0.193  Sum_probs=87.9

Q ss_pred             EEeCCC-CccccCCccCCCCCCCCEEECCC-CCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426           86 LNISSL-NLRGTIPSQLGNLSSLQSLNLSC-NRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL  163 (253)
Q Consensus        86 L~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  163 (253)
                      ++.+++ +++ .+|. +..+.+|+.|+|++ |.+.+..+..|..+++|++|+|++|.++ .+++..|..+++|++|+|++
T Consensus        13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCS
T ss_pred             EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCCC
Confidence            355566 677 5787 99999999999996 9999777788999999999999999999 56666669999999999999


Q ss_pred             CcCCCCCCccCCCCCCcceEeeecCcCcc
Q 025426          164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSG  192 (253)
Q Consensus       164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  192 (253)
                      |.+++..+..|..++ |+.|++.+|.+..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            999966666666665 9999999999873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.30  E-value=1.6e-13  Score=116.60  Aligned_cols=140  Identities=20%  Similarity=0.201  Sum_probs=108.4

Q ss_pred             CCCCCEEECCCCCCCCcCChhhhcc-----CCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccC----
Q 025426          104 LSSLQSLNLSCNRLSGSIPSTIFTI-----YTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTL----  174 (253)
Q Consensus       104 l~~L~~L~l~~n~l~~~~~~~l~~l-----~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----  174 (253)
                      +++|+.|++++|.++......+...     .+|++|++++|.++......+...+.+|++|++++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            4679999999999985555555443     6999999999999744444444556789999999999975443333    


Q ss_pred             -CCCCCcceEeeecCcCccc----CCccccCCCCCCeeecccCcCccc----CChhhcCCCCCCEEeccCCCCceecc
Q 025426          175 -SNCTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIGANRLQGE----IPREFGNLTELEQFSLPTNNLQVMIL  243 (253)
Q Consensus       175 -~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~p  243 (253)
                       ...++|++|++++|.+++.    ++..+...++|++|+|++|.+.+.    ++..+...++|+.|++++|.+++...
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence             3467899999999999753    344457789999999999999863    35667788899999999999986543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.27  E-value=1.7e-12  Score=116.49  Aligned_cols=39  Identities=8%  Similarity=0.090  Sum_probs=16.6

Q ss_pred             CCCCCCEEECCCCCCCCc----CChhhhccCCCCEEEccCCCC
Q 025426          103 NLSSLQSLNLSCNRLSGS----IPSTIFTIYTLKNVSLGKNKL  141 (253)
Q Consensus       103 ~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l  141 (253)
                      .+++|++|++++|.+.+.    ++..+..+++|++|++++|.+
T Consensus       162 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~  204 (592)
T 3ogk_B          162 HCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEF  204 (592)
T ss_dssp             HCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCC
T ss_pred             hCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCC
Confidence            344555555555544322    112223344444444444444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.26  E-value=4.7e-13  Score=120.10  Aligned_cols=137  Identities=12%  Similarity=0.095  Sum_probs=80.3

Q ss_pred             CCCCCEEECCCCCCCCcCChhhhc-cCCCCEEEcc----CCCCcCc-----CchhHhcCCCCccEEEeecCc--CCCCCC
Q 025426          104 LSSLQSLNLSCNRLSGSIPSTIFT-IYTLKNVSLG----KNKLSGQ-----IPTNICSNLPFLEFLSLSLNM--FHGGIP  171 (253)
Q Consensus       104 l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~----~n~l~~~-----~~~~~~~~l~~L~~L~l~~n~--~~~~~~  171 (253)
                      +++|+.|+++.|.+++..+..+.. +++|++|+++    .|.+++.     ++. ++..+++|++|++++|.  +++..+
T Consensus       377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~-~~~~~~~L~~L~L~~~~~~l~~~~~  455 (592)
T 3ogk_B          377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRS-LLIGCKKLRRFAFYLRQGGLTDLGL  455 (592)
T ss_dssp             CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHH-HHHHCTTCCEEEEECCGGGCCHHHH
T ss_pred             CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHH-HHHhCCCCCEEEEecCCCCccHHHH
Confidence            455555555555555444444443 5566666664    4445421     111 22446666666665432  433322


Q ss_pred             ccC-CCCCCcceEeeecCcCccc-CCccccCCCCCCeeecccCcCccc-CChhhcCCCCCCEEeccCCCCcee
Q 025426          172 STL-SNCTYLRTLSLAYNDFSGA-VPREIGNLTKLKVLYIGANRLQGE-IPREFGNLTELEQFSLPTNNLQVM  241 (253)
Q Consensus       172 ~~~-~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~  241 (253)
                      ..+ ..+++|++|++++|++++. ++..+..+++|++|++++|++++. ++..+..+++|+.|++++|++++.
T Consensus       456 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          456 SYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             HHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             HHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            222 2367788888888877652 344456778888888888887654 344456778888888888887754

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.18  E-value=3.1e-10  Score=97.34  Aligned_cols=161  Identities=16%  Similarity=0.133  Sum_probs=81.2

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      .++.+.+.. .+.......|.++.+|+.+++.+|.++.....+|. ..+|+.+.+..+ +. .++...|..+.+|+.+++
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CC-EECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hh-eehhhHhhCCCCCCEEec
Confidence            356666664 45545556677777777777777766633333333 456666666533 44 555555566666666666


Q ss_pred             ecC---------------------cCCCCCCccCCCCCCcceEeeecCcCc-----ccCCccccCCCCCCeeecccCcCc
Q 025426          162 SLN---------------------MFHGGIPSTLSNCTYLRTLSLAYNDFS-----GAVPREIGNLTKLKVLYIGANRLQ  215 (253)
Q Consensus       162 ~~n---------------------~~~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~p~~l~~l~~L~~L~l~~n~l~  215 (253)
                      ..+                     .++.....+|.++++|+.+.+.+|.+.     ...+..|.++++|+.+++.+ .++
T Consensus       234 ~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~  312 (401)
T 4fdw_A          234 PENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIR  312 (401)
T ss_dssp             CTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCC
T ss_pred             CCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceE
Confidence            543                     122122334444445555554444332     12333444445555555542 233


Q ss_pred             ccCChhhcCCCCCCEEeccCCCCceecchhhhh
Q 025426          216 GEIPREFGNLTELEQFSLPTNNLQVMILNFLQF  248 (253)
Q Consensus       216 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~  248 (253)
                      .....+|.++++|+.+++..| ++.+.+..|.+
T Consensus       313 ~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~  344 (401)
T 4fdw_A          313 ILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNN  344 (401)
T ss_dssp             EECTTTTTTCCSCCEEEECTT-CCEECTTSSSS
T ss_pred             EEhhhhhcCCCCccEEEECcc-ccEEcHHhCCC
Confidence            333444555555555555332 44444444443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.16  E-value=2.7e-10  Score=97.63  Aligned_cols=163  Identities=15%  Similarity=0.127  Sum_probs=114.9

Q ss_pred             CeEEEEEeCCCCccccCCcc----------------------CCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccC
Q 025426           81 HRVTVLNISSLNLRGTIPSQ----------------------LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK  138 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~----------------------~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  138 (253)
                      .+++.+++.+|.++......                      |.++.+|+.+++..+ ++..-..+|.. .+|+.+.+ .
T Consensus       180 ~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~l-p  256 (401)
T 4fdw_A          180 YNLKKADLSKTKITKLPASTFVYAGIEEVLLPVTLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKL-P  256 (401)
T ss_dssp             TTCCEEECTTSCCSEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEE-E
T ss_pred             ccCCeeecCCCcceEechhhEeecccCEEEeCCchheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEe-C
Confidence            45777777776665333333                      334444444444432 22222233333 45555555 2


Q ss_pred             CCCcCcCchhHhcCCCCccEEEeecCcCC-----CCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCc
Q 025426          139 NKLSGQIPTNICSNLPFLEFLSLSLNMFH-----GGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANR  213 (253)
Q Consensus       139 n~l~~~~~~~~~~~l~~L~~L~l~~n~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~  213 (253)
                      +.+. .++...|..+.+|+.+++.+|.+.     ...+.+|.++++|+.+.+.. .++......|.++++|+.+++..+ 
T Consensus       257 ~~i~-~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-  333 (401)
T 4fdw_A          257 NGVT-NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-  333 (401)
T ss_dssp             TTCC-EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-
T ss_pred             CCcc-EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-
Confidence            3455 677778899999999999998764     34557899999999999994 577667788999999999999665 


Q ss_pred             CcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426          214 LQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       214 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  250 (253)
                      ++.....+|..+ +|+.+++.+|.+....+..|.+++
T Consensus       334 l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~  369 (401)
T 4fdw_A          334 VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFP  369 (401)
T ss_dssp             CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSC
T ss_pred             ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCC
Confidence            655667889999 999999999998888877777765

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.10  E-value=2.9e-12  Score=114.94  Aligned_cols=88  Identities=15%  Similarity=0.132  Sum_probs=47.6

Q ss_pred             cCCCCccEEEeecCcCCCCCCccCCC-CCCcceEeeecCcCcccCCccc-cCCCCCCeeecccCcCcccCCh-hhcCCCC
Q 025426          151 SNLPFLEFLSLSLNMFHGGIPSTLSN-CTYLRTLSLAYNDFSGAVPREI-GNLTKLKVLYIGANRLQGEIPR-EFGNLTE  227 (253)
Q Consensus       151 ~~l~~L~~L~l~~n~~~~~~~~~~~~-l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~  227 (253)
                      ..+++|++|++++ .+++..+..+.. +++|++|++++|.+++.....+ ..+++|++|++++|++++.... ....+++
T Consensus       429 ~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~  507 (594)
T 2p1m_B          429 EHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLET  507 (594)
T ss_dssp             HHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGG
T ss_pred             hhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCC
Confidence            3344555555544 333222222222 5666777777766654433333 4466777777777776543332 3344667


Q ss_pred             CCEEeccCCCCc
Q 025426          228 LEQFSLPTNNLQ  239 (253)
Q Consensus       228 L~~L~l~~n~l~  239 (253)
                      |+.|++++|+++
T Consensus       508 L~~L~l~~~~~~  519 (594)
T 2p1m_B          508 MRSLWMSSCSVS  519 (594)
T ss_dssp             SSEEEEESSCCB
T ss_pred             CCEEeeeCCCCC
Confidence            777777777664

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.04  E-value=5.6e-12  Score=113.06  Aligned_cols=163  Identities=18%  Similarity=0.119  Sum_probs=89.5

Q ss_pred             CeEEEEEeCCCCccccC-CccCCCCCCCCEEECCCC---------------------------------CCCCcCChhhh
Q 025426           81 HRVTVLNISSLNLRGTI-PSQLGNLSSLQSLNLSCN---------------------------------RLSGSIPSTIF  126 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~-~~~~~~l~~L~~L~l~~n---------------------------------~l~~~~~~~l~  126 (253)
                      ++++.|++++|.+++.. ...+..+++|+.|++++|                                 .+++.....+.
T Consensus       289 ~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~  368 (594)
T 2p1m_B          289 SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS  368 (594)
T ss_dssp             TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH
T ss_pred             CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH
Confidence            56788888888765332 222345566666666555                                 11111111111


Q ss_pred             -ccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee--c----CcCCCCC-----CccCCCCCCcceEeeecCcCcccC
Q 025426          127 -TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS--L----NMFHGGI-----PSTLSNCTYLRTLSLAYNDFSGAV  194 (253)
Q Consensus       127 -~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~--~----n~~~~~~-----~~~~~~l~~L~~L~L~~n~l~~~~  194 (253)
                       .+++|++|.+..|.+++.....+...+++|++|+++  +    +.++...     +..+..+++|+.|++++ .+++..
T Consensus       369 ~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~  447 (594)
T 2p1m_B          369 MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKV  447 (594)
T ss_dssp             HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHH
T ss_pred             HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHH
Confidence             244555555444554433333332345666666666  2    3333111     11134556667777755 444433


Q ss_pred             CccccC-CCCCCeeecccCcCcccCChhh-cCCCCCCEEeccCCCCceecch
Q 025426          195 PREIGN-LTKLKVLYIGANRLQGEIPREF-GNLTELEQFSLPTNNLQVMILN  244 (253)
Q Consensus       195 p~~l~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~p~  244 (253)
                      +..+.. +++|++|++++|.+++..+..+ ..+++|+.|++++|.+++..+.
T Consensus       448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~  499 (594)
T 2p1m_B          448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL  499 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH
T ss_pred             HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH
Confidence            344443 6788888888888876555444 6688999999999988654443

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.92  E-value=9.3e-10  Score=92.95  Aligned_cols=165  Identities=19%  Similarity=0.165  Sum_probs=110.2

Q ss_pred             CCeEEEEEeCCCCcc---------ccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHh
Q 025426           80 SHRVTVLNISSLNLR---------GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNIC  150 (253)
Q Consensus        80 ~~~l~~L~l~~~~l~---------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~  150 (253)
                      .++++.|.+.+....         +.+...+..+++|+.|++++|.-. .++. + .+++|++|++..+.++......+.
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHH
Confidence            357888888765331         123344567899999999887311 2333 3 378999999999988644333332


Q ss_pred             -cCCCCccEEEeec--CcCCCC-----CCccC--CCCCCcceEeeecCcCcccCCcccc---CCCCCCeeecccCcCccc
Q 025426          151 -SNLPFLEFLSLSL--NMFHGG-----IPSTL--SNCTYLRTLSLAYNDFSGAVPREIG---NLTKLKVLYIGANRLQGE  217 (253)
Q Consensus       151 -~~l~~L~~L~l~~--n~~~~~-----~~~~~--~~l~~L~~L~L~~n~l~~~~p~~l~---~l~~L~~L~l~~n~l~~~  217 (253)
                       ..+++|++|+|+.  |...+.     +...+  ..+++|++|++.+|.+.+..+..+.   .+++|++|+|+.|.+.+.
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence             2689999999864  222111     11122  3578999999999998754333332   468999999999999864


Q ss_pred             C----ChhhcCCCCCCEEeccCCCCceecchhhh
Q 025426          218 I----PREFGNLTELEQFSLPTNNLQVMILNFLQ  247 (253)
Q Consensus       218 ~----~~~~~~l~~L~~L~l~~n~l~~~~p~~~~  247 (253)
                      .    +..+..+++|+.|++++|.+++.--..+.
T Consensus       295 G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~  328 (362)
T 2ra8_A          295 GARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQ  328 (362)
T ss_dssp             HHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHH
T ss_pred             HHHHHHhhcccCCcceEEECCCCcCCHHHHHHHH
Confidence            3    33345679999999999988755444443

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.79  E-value=1.2e-09  Score=83.58  Aligned_cols=63  Identities=22%  Similarity=0.227  Sum_probs=35.0

Q ss_pred             CCCcceEeeecCcCccc----CCccccCCCCCCeeec--ccCcCccc----CChhhcCCCCCCEEeccCCCCc
Q 025426          177 CTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYI--GANRLQGE----IPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       177 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l--~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      .++|++|++++|.+++.    +...+...+.|++|++  ++|.+.+.    +...+...+.|+.|++++|.+.
T Consensus        92 n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A           92 NNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             CSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             CCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            34455555555555432    2333444556666666  55666542    2344555677777777777764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.78  E-value=3.4e-09  Score=89.47  Aligned_cols=157  Identities=15%  Similarity=0.139  Sum_probs=105.4

Q ss_pred             CeEEEEEeCCCCccc-c-------CCccCCCCCCCCEEECCCCCCC---------CcCChhhhccCCCCEEEccCCCCcC
Q 025426           81 HRVTVLNISSLNLRG-T-------IPSQLGNLSSLQSLNLSCNRLS---------GSIPSTIFTIYTLKNVSLGKNKLSG  143 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~-~-------~~~~~~~l~~L~~L~l~~n~l~---------~~~~~~l~~l~~L~~L~l~~n~l~~  143 (253)
                      ..++.|.+......+ .       +..+...+++|+.|.+......         +.+...+..+++|+.|++++|.-. 
T Consensus       107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-  185 (362)
T 2ra8_A          107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-  185 (362)
T ss_dssp             GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred             hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence            457777777655331 1       1223446789999999765432         124455677899999999988422 


Q ss_pred             cCchhHhcCCCCccEEEeecCcCCCCCCccCC--CCCCcceEeeec--CcCccc-----CCccc--cCCCCCCeeecccC
Q 025426          144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLS--NCTYLRTLSLAY--NDFSGA-----VPREI--GNLTKLKVLYIGAN  212 (253)
Q Consensus       144 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~L~~--n~l~~~-----~p~~l--~~l~~L~~L~l~~n  212 (253)
                      .+++ +  .+++|++|++..+.++......+.  .+++|++|+|..  |...+.     +...+  ..+++|++|++.+|
T Consensus       186 ~l~~-~--~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~  262 (362)
T 2ra8_A          186 SIGK-K--PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA  262 (362)
T ss_dssp             BCCS-C--BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred             eecc-c--cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence            4444 2  378999999999887644333343  689999999863  221111     11222  24789999999999


Q ss_pred             cCcccCChhhc---CCCCCCEEeccCCCCcee
Q 025426          213 RLQGEIPREFG---NLTELEQFSLPTNNLQVM  241 (253)
Q Consensus       213 ~l~~~~~~~~~---~l~~L~~L~l~~n~l~~~  241 (253)
                      .+.+..+..+.   .+++|+.|+|+.|.+++.
T Consensus       263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~  294 (362)
T 2ra8_A          263 EEQNVVVEMFLESDILPQLETMDISAGVLTDE  294 (362)
T ss_dssp             TTHHHHHHHHHHCSSGGGCSEEECCSSCCBHH
T ss_pred             CCchHHHHHHHhCccCCCCCEEECCCCCCChH
Confidence            98764444443   578999999999999874

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.74  E-value=1.1e-09  Score=83.72  Aligned_cols=117  Identities=15%  Similarity=0.117  Sum_probs=76.0

Q ss_pred             CccCCCCCCCCEEECCCC-CCCCc----CChhhhccCCCCEEEccCCCCcCc----CchhHhcCCCCccEEEeecCcCCC
Q 025426           98 PSQLGNLSSLQSLNLSCN-RLSGS----IPSTIFTIYTLKNVSLGKNKLSGQ----IPTNICSNLPFLEFLSLSLNMFHG  168 (253)
Q Consensus        98 ~~~~~~l~~L~~L~l~~n-~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~  168 (253)
                      ...+...+.|++|++++| .+...    +...+...++|++|++++|.+...    +...+ ...++|++|++++|.++.
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L-~~n~~L~~L~L~~N~i~~  107 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEML-KVNNTLKSLNVESNFISG  107 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHH-HHCSSCCEEECCSSCCCH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHH-HhCCCcCEEECcCCcCCH
Confidence            344556677777888777 66532    333445567788888888877632    22222 345678888888888764


Q ss_pred             C----CCccCCCCCCcceEee--ecCcCccc----CCccccCCCCCCeeecccCcCc
Q 025426          169 G----IPSTLSNCTYLRTLSL--AYNDFSGA----VPREIGNLTKLKVLYIGANRLQ  215 (253)
Q Consensus       169 ~----~~~~~~~l~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~  215 (253)
                      .    +...+...++|++|++  ++|.+++.    +.+.+...+.|++|++++|.+.
T Consensus       108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2    3455666678888888  77887743    2334455578888888888875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.64  E-value=3.3e-09  Score=85.59  Aligned_cols=80  Identities=25%  Similarity=0.357  Sum_probs=56.1

Q ss_pred             cCCCCccEEEeecCcCCC--CCCccCCCCCCcceEeeecCcCcccCCccccCCC--CCCeeecccCcCcccCC-------
Q 025426          151 SNLPFLEFLSLSLNMFHG--GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT--KLKVLYIGANRLQGEIP-------  219 (253)
Q Consensus       151 ~~l~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~l~~n~l~~~~~-------  219 (253)
                      ..+++|++|+|++|.+++  .++..+..+++|+.|+|++|.+++.  ..+..++  +|++|+|++|++.+.+|       
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            456778888888888875  3345556778888888888888754  2233333  78888888888876554       


Q ss_pred             hhhcCCCCCCEEe
Q 025426          220 REFGNLTELEQFS  232 (253)
Q Consensus       220 ~~~~~l~~L~~L~  232 (253)
                      ..+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2367788888876

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.44  E-value=2.6e-07  Score=74.41  Aligned_cols=96  Identities=22%  Similarity=0.221  Sum_probs=69.4

Q ss_pred             EECCCCCCCCcCCh----hhhccCCCCEEEccCCCCcC--cCchhHhcCCCCccEEEeecCcCCCCC-CccCCCCCCcce
Q 025426          110 LNLSCNRLSGSIPS----TIFTIYTLKNVSLGKNKLSG--QIPTNICSNLPFLEFLSLSLNMFHGGI-PSTLSNCTYLRT  182 (253)
Q Consensus       110 L~l~~n~l~~~~~~----~l~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~  182 (253)
                      ++++.|... .++.    ....+++|++|++++|.+++  .++..+ ..+++|++|+|++|.+++.. ...+..+ +|++
T Consensus       148 l~l~~N~~~-~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~-~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~  224 (267)
T 3rw6_A          148 IDVVLNRRS-CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV-QKAPNLKILNLSGNELKSERELDKIKGL-KLEE  224 (267)
T ss_dssp             CCCCTTSHH-HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHH-HHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSE
T ss_pred             ccccCCHHH-HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHH-hhCCCCCEEECCCCccCCchhhhhcccC-Ccce
Confidence            566777433 2222    22568899999999999984  333433 67999999999999998541 1334444 8999


Q ss_pred             EeeecCcCcccCCc-------cccCCCCCCeee
Q 025426          183 LSLAYNDFSGAVPR-------EIGNLTKLKVLY  208 (253)
Q Consensus       183 L~L~~n~l~~~~p~-------~l~~l~~L~~L~  208 (253)
                      |++.+|.+.+..|.       .+..+++|+.||
T Consensus       225 L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          225 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             EECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             EEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            99999999876652       356788999887

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.34  E-value=1.9e-07  Score=70.26  Aligned_cols=86  Identities=12%  Similarity=0.181  Sum_probs=57.8

Q ss_pred             CCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCc-CCCCCCccCCCC----CCcceEeeecCc-CcccCCccccCCC
Q 025426          129 YTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNM-FHGGIPSTLSNC----TYLRTLSLAYND-FSGAVPREIGNLT  202 (253)
Q Consensus       129 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~  202 (253)
                      .+|++||++++.++...-..+ ..+++|++|+|++|. ++...-..+..+    ++|++|++++|. +++..-..+.+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCC
Confidence            468888888888774444444 677888888888884 664333444443    367888888774 6654445566677


Q ss_pred             CCCeeecccCc-Cc
Q 025426          203 KLKVLYIGANR-LQ  215 (253)
Q Consensus       203 ~L~~L~l~~n~-l~  215 (253)
                      +|+.|++++++ ++
T Consensus       140 ~L~~L~L~~c~~It  153 (176)
T 3e4g_A          140 NLKYLFLSDLPGVK  153 (176)
T ss_dssp             TCCEEEEESCTTCC
T ss_pred             CCCEEECCCCCCCC
Confidence            78888887775 44

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.34  E-value=6.5e-06  Score=69.58  Aligned_cols=145  Identities=15%  Similarity=0.192  Sum_probs=100.6

Q ss_pred             cCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCC
Q 025426          100 QLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTY  179 (253)
Q Consensus       100 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~  179 (253)
                      .+....+|+.+.+..+ +......++.....|+.+.+..+ ++ .+....|..+.+|+.+.+..+ ++......|.++++
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~-~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~  287 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VT-SIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CC-EECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-cc-EeCccccceeehhcccccccc-ceeccccccccccc
Confidence            3445566777777554 33244556677788888888765 55 666777777888888888654 44344467888888


Q ss_pred             cceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426          180 LRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       180 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  250 (253)
                      |+.+.+.++.++......|.++.+|+.+.+..+ ++.....+|.++.+|+.+.+..+ ++.+-..+|.+.+
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~  356 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS  356 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence            888888888777666677888888888888654 54455677888888888887654 5556566666553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.32  E-value=2.7e-06  Score=72.43  Aligned_cols=133  Identities=11%  Similarity=0.219  Sum_probs=77.7

Q ss_pred             CccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCC
Q 025426           98 PSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNC  177 (253)
Q Consensus        98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  177 (253)
                      ...|..+..|+.+.+..+... ....++.++..|+.+.+. +.+. .+++..|.++.+|+.+++..+ ++.....+|.++
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~-~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C  333 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRIT-ELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC  333 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             cceeeecccccEEecccccce-ecCcccccccccccccCC-Cccc-ccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence            345666677777777655432 445566667777777775 3454 666667777777777777654 443444667777


Q ss_pred             CCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426          178 TYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       178 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      .+|+.+.+..+ ++......|.++.+|+.+++.++...   -..+..+.+|+.+.+..+.+
T Consensus       334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH---HHTCBCCCCC----------
T ss_pred             CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCCCE
Confidence            77777777644 55455566777777777777766532   13455666677766655543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.28  E-value=4.2e-07  Score=68.41  Aligned_cols=84  Identities=7%  Similarity=0.082  Sum_probs=44.1

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCC-CCCcCChhhhcc----CCCCEEEccCCC-CcCcCchhHhcCCC
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNR-LSGSIPSTIFTI----YTLKNVSLGKNK-LSGQIPTNICSNLP  154 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l----~~L~~L~l~~n~-l~~~~~~~~~~~l~  154 (253)
                      ..++.||++++.+++..-..+..+++|+.|+|++|. ++..--..+..+    ++|++|++++|. ++...-..+ ..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L-~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIAL-HHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHG-GGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHH-hcCC
Confidence            356777777776665555555666666666666664 442222233332    246666666653 442222222 3455


Q ss_pred             CccEEEeecCc
Q 025426          155 FLEFLSLSLNM  165 (253)
Q Consensus       155 ~L~~L~l~~n~  165 (253)
                      +|++|+++++.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            55555555553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.23  E-value=9.2e-06  Score=69.15  Aligned_cols=157  Identities=18%  Similarity=0.156  Sum_probs=103.9

Q ss_pred             EEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426           83 VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS  162 (253)
Q Consensus        83 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  162 (253)
                      ++.+.+... ++......+..+..++.+.+..+... .....+.....++.+....+.    ++...|..+.+|+.+.+.
T Consensus       232 l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~----i~~~~F~~~~~L~~i~l~  305 (394)
T 4fs7_A          232 VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVI----VPEKTFYGCSSLTEVKLL  305 (394)
T ss_dssp             CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSE----ECTTTTTTCTTCCEEEEC
T ss_pred             CceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCcee----eccccccccccccccccc
Confidence            344444332 22233445566667777777665443 445556667777777666543    445556778889988887


Q ss_pred             cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceec
Q 025426          163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI  242 (253)
Q Consensus       163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  242 (253)
                      .+ ++.....+|.++.+|+.+++..+ ++......|.++.+|+.+++..+ ++.....+|.++.+|+.+++..+ ++ .+
T Consensus       306 ~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~  380 (394)
T 4fs7_A          306 DS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QY  380 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GG
T ss_pred             cc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-Eh
Confidence            65 55455577888899999998754 66566778888999999998776 55566778999999999988754 22 22


Q ss_pred             chhhhhcc
Q 025426          243 LNFLQFYS  250 (253)
Q Consensus       243 p~~~~~l~  250 (253)
                      ...|.+++
T Consensus       381 ~~~F~~c~  388 (394)
T 4fs7_A          381 RYDFEDTT  388 (394)
T ss_dssp             GGGBCTTC
T ss_pred             hheecCCC
Confidence            34455443

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.10  E-value=2.2e-05  Score=66.34  Aligned_cols=140  Identities=12%  Similarity=0.136  Sum_probs=106.3

Q ss_pred             EEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEee
Q 025426           83 VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLS  162 (253)
Q Consensus        83 l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~  162 (253)
                      ++.+.+..+ +.......+..+..|+.+.+..+ ++..-..++....+|+.+.+..+ +. .++...|..+.+|+.+.+.
T Consensus       219 l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~aF~~c~~L~~i~l~  294 (379)
T 4h09_A          219 LKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLLCSGCSNLTKVVMD  294 (379)
T ss_dssp             CSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTTTTTCTTCCEEEEC
T ss_pred             cceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-ecccccccccccccccccc
Confidence            444444433 33345566778889999999776 55455667888899999999754 65 7788888999999999999


Q ss_pred             cCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCC
Q 025426          163 LNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL  228 (253)
Q Consensus       163 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  228 (253)
                      ++.++.....+|.++.+|+.+.+..+ ++......|.++.+|+.+.+..+ ++.....+|.+++.+
T Consensus       295 ~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~~  358 (379)
T 4h09_A          295 NSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSIT  358 (379)
T ss_dssp             CTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred             ccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence            98887666688999999999999765 66566778999999999998655 554556778777544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=98.06  E-value=1.6e-05  Score=67.63  Aligned_cols=141  Identities=15%  Similarity=0.145  Sum_probs=109.0

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ..++.+.+..+... .....|..+..++.+.+..+.+   ....+..+.+|+.+.+..+ +. .+++..|.++.+|+.++
T Consensus       253 ~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~-~I~~~aF~~c~~L~~i~  326 (394)
T 4fs7_A          253 TDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VK-FIGEEAFESCTSLVSID  326 (394)
T ss_dssp             SSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CC-EECTTTTTTCTTCCEEC
T ss_pred             ccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccccccccccc-cc-eechhhhcCCCCCCEEE
Confidence            45667777766443 5667788888999888876543   2346778899999999765 66 78888889999999999


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEE
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQF  231 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  231 (253)
                      +..+ ++.....+|.++.+|+.+.+..+ ++......|.++.+|+.+++..+- . .+..+|.++++|+.+
T Consensus       327 lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~~-~-~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          327 LPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKRL-E-QYRYDFEDTTKFKWI  393 (394)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGGG-G-GGGGGBCTTCEEEEE
T ss_pred             eCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCCC-E-EhhheecCCCCCcEE
Confidence            9754 66455688999999999999877 765677889999999999997653 2 345678888888765

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.85  E-value=0.00014  Score=61.83  Aligned_cols=111  Identities=15%  Similarity=0.196  Sum_probs=86.7

Q ss_pred             hhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCC
Q 025426          123 STIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT  202 (253)
Q Consensus       123 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~  202 (253)
                      .+|..+.+|+.+.+..+..  .+....|..+.+|+.+.+. +.++.....+|.++.+|+.+.+..+ ++......|.++.
T Consensus       259 ~aF~~c~~L~~i~lp~~~~--~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~  334 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVV--SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCC--EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCT
T ss_pred             ceeeecccccEEecccccc--eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCC
Confidence            4566778888888876543  5667777888999999986 4455455578999999999999865 6656677899999


Q ss_pred             CCCeeecccCcCcccCChhhcCCCCCCEEeccCCCC
Q 025426          203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       203 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      +|+.+.+..+ ++.....+|.++.+|+.+++.++..
T Consensus       335 ~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~  369 (394)
T 4gt6_A          335 QLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRS  369 (394)
T ss_dssp             TCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHH
T ss_pred             CCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCcee
Confidence            9999999755 5546678899999999999998754

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.63  E-value=1.9e-05  Score=60.40  Aligned_cols=64  Identities=11%  Similarity=0.097  Sum_probs=31.5

Q ss_pred             CCCCcceEeeecCcCccc----CCccccCCCCCCeeecccC---cCcc----cCChhhcCCCCCCEEeccCCCCc
Q 025426          176 NCTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIGAN---RLQG----EIPREFGNLTELEQFSLPTNNLQ  239 (253)
Q Consensus       176 ~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n---~l~~----~~~~~~~~l~~L~~L~l~~n~l~  239 (253)
                      .-+.|++|+|++|.|.+.    +-+.+..-+.|++|+|++|   .+.+    .+.+.+..-+.|+.|+++.|.+.
T Consensus        96 ~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A           96 TSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred             cCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence            334455555555555432    1222333345666666543   2222    13344555666777777766543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.50  E-value=4.4e-05  Score=58.40  Aligned_cols=88  Identities=13%  Similarity=0.099  Sum_probs=39.3

Q ss_pred             hhccCCCCEEEccCCCCcCc----CchhHhcCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCc---Cccc
Q 025426          125 IFTIYTLKNVSLGKNKLSGQ----IPTNICSNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYND---FSGA  193 (253)
Q Consensus       125 l~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~---l~~~  193 (253)
                      +..-..|++|+|++|.+...    +...+ ..-..|++|+|+.|.|+..    +...+..-+.|++|++++|.   +...
T Consensus        66 L~~N~~L~~L~L~~n~igd~ga~alA~aL-~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~  144 (197)
T 1pgv_A           66 ACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  144 (197)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HhhCCCcCEEEccCCCCChHHHHHHHHHH-hcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHH
Confidence            33344455555555555411    11112 2334555555555555431    22334444556666665432   2211


Q ss_pred             ----CCccccCCCCCCeeecccCc
Q 025426          194 ----VPREIGNLTKLKVLYIGANR  213 (253)
Q Consensus       194 ----~p~~l~~l~~L~~L~l~~n~  213 (253)
                          +.+.+..-+.|+.|+++.|.
T Consensus       145 g~~~ia~aL~~N~tL~~L~l~~~~  168 (197)
T 1pgv_A          145 VEMDMMMAIEENESLLRVGISFAS  168 (197)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCCcCeEeccCCC
Confidence                12233344556666666554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.25  E-value=0.00064  Score=48.39  Aligned_cols=57  Identities=18%  Similarity=0.296  Sum_probs=43.7

Q ss_pred             cEEEeecCcCC-CCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCc
Q 025426          157 EFLSLSLNMFH-GGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQ  215 (253)
Q Consensus       157 ~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  215 (253)
                      ..++.+++.++ ..+|..+.  +++++|+|++|.|+...+..|..+++|++|+|.+|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            46788888876 35564432  46899999999998666667788889999999999875

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.05  E-value=0.002  Score=45.80  Aligned_cols=55  Identities=20%  Similarity=0.340  Sum_probs=28.1

Q ss_pred             EEEeCCCCcc-ccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCC
Q 025426           85 VLNISSLNLR-GTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKL  141 (253)
Q Consensus        85 ~L~l~~~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  141 (253)
                      .++-++++++ ..+|..+.  .+|+.|+|++|.++..-+..|..+++|++|+|.+|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            4555555554 24443332  2455666666666543334445555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-18
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-08
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-06
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	9e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	1e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	2e-04
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	0.004
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.002

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 79.4 bits (194), Expect = 5e-18
 Identities = 55/174 (31%), Positives = 80/174 (45%), Gaps = 11/174 (6%)

Query: 38  TDRDALLALKAHITHDPTNFLAKNWNTSTPVCN--WTGVACD--VHSHRVTVLNISSLNL 93
            D+ ALL +K  +  +PT     +W  +T  CN  W GV CD    ++RV  L++S LNL
Sbjct: 6   QDKQALLQIKKDLG-NPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNL 62

Query: 94  RG--TIPSQLGNLSSLQSLNLS-CNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNIC 150
                IPS L NL  L  L +   N L G IP  I  +  L  + +           +  
Sbjct: 63  PKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN-VSGAIPDFL 121

Query: 151 SNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKL 204
           S +  L  L  S N   G +P ++S+   L  ++   N  SGA+P   G+ +KL
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.8 bits (130), Expect = 2e-09
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 69  CNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTI 128
                +     S  +  L++ +  + GT+P  L  L  L SLN+S N L G IP     +
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL 290

Query: 129 YTLKNVSLGKNKLSGQIPTNICS 151
                 +   NK     P   C+
Sbjct: 291 QRFDVSAYANNKCLCGSPLPACT 313

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 52.1 bits (123), Expect = 2e-08
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)

Query: 161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP 219
           L  N  +G +P  L+   +L +L++++N+  G +P + GNL +  V     N+     P
Sbjct: 251 LRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 50.1 bits (118), Expect = 6e-08
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 176 NCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPT 235
               L  L L  N   G +P+ +  L  L  L +  N L GEIP + GNL   +  +   
Sbjct: 242 LSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYAN 300

Query: 236 NNL 238
           N  
Sbjct: 301 NKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.0 bits (89), Expect = 3e-04
 Identities = 31/188 (16%), Positives = 55/188 (29%), Gaps = 2/188 (1%)

Query: 61  NWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGS 120
               +    +            +  L+ S   L GT+P  + +L +L  +    NR+SG+
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 121 IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL 180
           IP +  +   L          +        +                 G  S L      
Sbjct: 165 IPDSYGSFSKLFTSMTISR--NRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN 222

Query: 181 RTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV 240
                   +       ++G    L  L +  NR+ G +P+    L  L   ++  NNL  
Sbjct: 223 TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 241 MILNFLQF 248
            I      
Sbjct: 283 EIPQGGNL 290

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 69.6 bits (169), Expect = 2e-14
 Identities = 42/207 (20%), Positives = 73/207 (35%), Gaps = 29/207 (14%)

Query: 49  HITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQ 108
                    L    +        + +        +  L+++   L+      L +L++L 
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKD--IGTLASLTNLT 244

Query: 109 SLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSN---------------- 152
            L+L+ N++S   P  +  +  L  + LG N++S   P    +                 
Sbjct: 245 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP 302

Query: 153 ---LPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYI 209
              L  L +L+L  N      P  +S+ T L+ L  A N  S      + NLT +  L  
Sbjct: 303 ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSA 358

Query: 210 GANRLQGEIPREFGNLTELEQFSLPTN 236
           G N++    P    NLT + Q  L   
Sbjct: 359 GHNQISDLTP--LANLTRITQLGLNDQ 383

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 59.7 bits (143), Expect = 4e-11
 Identities = 34/188 (18%), Positives = 62/188 (32%), Gaps = 14/188 (7%)

Query: 69  CNWTGVACDVHSHR---------VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG 119
           C+   V C                 +L++ +  +         NL +L +L L  N++S 
Sbjct: 10  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISK 69

Query: 120 SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTY 179
             P     +  L+ + L KN+L   +P  +   L  L      +      + + L+    
Sbjct: 70  ISPGAFAPLVKLERLYLSKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIV 128

Query: 180 LRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
           +  L       SG        + KL  + I    +         +LTEL    L  N + 
Sbjct: 129 VE-LGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKIT 184

Query: 240 VMILNFLQ 247
            +    L+
Sbjct: 185 KVDAASLK 192

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.6 bits (109), Expect = 1e-06
 Identities = 24/106 (22%), Positives = 37/106 (34%), Gaps = 3/106 (2%)

Query: 144 QIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
           ++P ++  +      L L  N           N   L TL L  N  S   P     L K
Sbjct: 24  KVPKDLPPDT---ALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 204 LKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFY 249
           L+ LY+  N+L+    +    L EL         ++  + N L   
Sbjct: 81  LERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQM 126

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 43.9 bits (102), Expect = 7e-06
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 170 IPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELE 229
           +P  L        L L  N  +     +  NL  L  L +  N++    P  F  L +LE
Sbjct: 25  VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLE 82

Query: 230 QFSLPTNNLQVMILNFLQFYSS 251
           +  L  N L+ +     +    
Sbjct: 83  RLYLSKNQLKELPEKMPKTLQE 104

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 20/120 (16%), Positives = 46/120 (38%), Gaps = 8/120 (6%)

Query: 102 GNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL 161
           G   SL  L+L  N+++    +++  +  L  + L  N +S     ++ +     E    
Sbjct: 168 GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLN 227

Query: 162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSG------AVPREIGNLTKLKVLYIGANRLQ 215
           +  +    +P  L++  Y++ + L  N+ S         P           + + +N +Q
Sbjct: 228 NNKLVK--VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.4 bits (129), Expect = 2e-09
 Identities = 28/155 (18%), Positives = 46/155 (29%)

Query: 83  VTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS 142
              + +    +     +      +L  L L  N L+    +    +  L+ + L  N   
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLT 202
             +       L  L  L L         P        L+ L L  N           +L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 203 KLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237
            L  L++  NR+     R F  L  L++  L  N 
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (114), Expect = 2e-07
 Identities = 36/161 (22%), Positives = 60/161 (37%), Gaps = 2/161 (1%)

Query: 79  HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGK 138
              R+  L++    L+   P     L++LQ L L  N L      T   +  L ++ L  
Sbjct: 103 GLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHG 162

Query: 139 NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREI 198
           N++S  +P      L  L+ L L  N      P    +   L TL L  N+ S      +
Sbjct: 163 NRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEAL 221

Query: 199 GNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQ 239
             L  L+ L +  N    +  R       L++F   ++ + 
Sbjct: 222 APLRALQYLRLNDNPWVCDC-RARPLWAWLQKFRGSSSEVP 261

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (112), Expect = 4e-07
 Identities = 38/182 (20%), Positives = 55/182 (30%), Gaps = 1/182 (0%)

Query: 58  LAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRL 117
           L   W  S  +      A    +    +    +  LR   P+    L  L +L+L    L
Sbjct: 58  LTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGL 117

Query: 118 SGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNC 177
               P     +  L+ + L  N L      +   +L  L  L L  N             
Sbjct: 118 QELGPGLFRGLAALQYLYLQDNALQALPD-DTFRDLGNLTHLFLHGNRISSVPERAFRGL 176

Query: 178 TYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN 237
             L  L L  N  +   P    +L +L  LY+ AN L          L  L+   L  N 
Sbjct: 177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236

Query: 238 LQ 239
             
Sbjct: 237 WV 238

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 4e-07
 Identities = 28/121 (23%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 85  VLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQ 144
           VL+++  +L  T+   L  L  +  L+LS NRL    P+    +  L+ + + +   +  
Sbjct: 2   VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA----LAALRCLEVLQASDNAL 55

Query: 145 IPTNICSNLPFLEFLSLSLNMFHGG-IPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTK 203
              +  +NLP L+ L L  N          L +C  L  L+L  N            L +
Sbjct: 56  ENVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQERLAE 114

Query: 204 L 204
           +
Sbjct: 115 M 115

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 5e-06
 Identities = 16/101 (15%), Positives = 39/101 (38%), Gaps = 4/101 (3%)

Query: 108 QSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFH 167
           Q+L+L+   L   +   + +   +      ++ +   +  +       ++ + LS ++  
Sbjct: 3   QTLDLTGKNLHPDVTGRLLSQ-GVIAFRCPRSFMDQPLAEHFS--PFRVQHMDLSNSVIE 59

Query: 168 G-GIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVL 207
              +   LS C+ L+ LSL     S  +   +   + L  L
Sbjct: 60  VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRL 100

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 4e-05
 Identities = 15/87 (17%), Positives = 25/87 (28%), Gaps = 9/87 (10%)

Query: 150 CSNLPFLEFLSLSLNMFHG----GIPSTLSNCTYLRTLSLAYNDFSGAVPREIG-----N 200
                 L  L L+           + +TL     LR L L+ N    A   ++       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 201 LTKLKVLYIGANRLQGEIPREFGNLTE 227
              L+ L +       E+      L +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 5e-05
 Identities = 13/88 (14%), Positives = 28/88 (31%), Gaps = 9/88 (10%)

Query: 131 LKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHG----GIPSTLSNCTYLRTLSLA 186
           ++++ +   +LS      +   L   + + L            I S L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 187 YNDFSGAVPREIG-----NLTKLKVLYI 209
            N+        +         K++ L +
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSL 91

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 7e-05
 Identities = 19/96 (19%), Positives = 32/96 (33%), Gaps = 14/96 (14%)

Query: 86  LNISSLNLRGT------IPSQLGNLSSLQSLNLSCNRLSG----SIPSTIFTIYTLKNVS 135
           L+I SL+++            L  L   Q + L    L+      I S +     L  ++
Sbjct: 2   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 136 LGKNKLSGQIPTNICSNL----PFLEFLSLSLNMFH 167
           L  N+L       +   L      ++ LSL      
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 2e-04
 Identities = 18/112 (16%), Positives = 34/112 (30%), Gaps = 24/112 (21%)

Query: 98  PSQLGNLSSLQSLNLSCNRLSG----SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNL 153
                  S L+ L L+   +S     S+ +T+   ++L+ + L  N L       +  ++
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421

Query: 154 PFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLK 205
                                     L  L L    +S  +   +  L K K
Sbjct: 422 R--------------------QPGCLLEQLVLYDIYWSEEMEDRLQALEKDK 453

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 3e-04
 Identities = 17/124 (13%), Positives = 36/124 (29%), Gaps = 12/124 (9%)

Query: 49  HITHDPTNFLAKNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGT----IPSQLGNL 104
                       N                     + VL ++  ++  +    + + L   
Sbjct: 337 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLAN 396

Query: 105 SSLQSLNLSCNRLSGSIPSTIFTI-----YTLKNVSLGKNKLSGQIP---TNICSNLPFL 156
            SL+ L+LS N L  +    +          L+ + L     S ++      +  + P L
Sbjct: 397 HSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSL 456

Query: 157 EFLS 160
             +S
Sbjct: 457 RVIS 460

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.6 bits (93), Expect = 9e-05
 Identities = 23/87 (26%), Positives = 38/87 (43%), Gaps = 9/87 (10%)

Query: 142 SGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNL 201
           S     ++C   P LE L++S N     +P+       L  L  ++N  +  VP    N 
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHLA-EVPELPQN- 325

Query: 202 TKLKVLYIGANRLQGEIPREFGNLTEL 228
             LK L++  N L+ E P    ++ +L
Sbjct: 326 --LKQLHVEYNPLR-EFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 6e-04
 Identities = 19/113 (16%), Positives = 31/113 (27%), Gaps = 10/113 (8%)

Query: 69  CNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTI 128
                         +             I S      SL+ LN+S N+L   +P+     
Sbjct: 248 FLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP-- 304

Query: 129 YTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR 181
             L+ +    N L       +      L+ L +  N      P    +   LR
Sbjct: 305 -RLERLIASFNHL-----AEVPELPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 61  NWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGS 120
                    +    +       +  LN+S+  L   +P+    L   + L  S N L+  
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRL---ERLIASFNHLA-E 318

Query: 121 IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158
           +P        LK + +  N L  + P +I  ++  L  
Sbjct: 319 VPELPQ---NLKQLHVEYNPLR-EFP-DIPESVEDLRM 351

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 17/135 (12%), Positives = 37/135 (27%), Gaps = 1/135 (0%)

Query: 105 SSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLN 164
                L  + +         +     L  + +   +    +       L  L  L++  +
Sbjct: 8   HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 165 MFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGN 224
                 P        L  L+L++N       + +  L+  +++  G         R    
Sbjct: 67  GLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQR 126

Query: 225 LTELEQFSLPTNNLQ 239
             E     +P   LQ
Sbjct: 127 WEEEGLGGVPEQKLQ 141

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (90), Expect = 1e-04
 Identities = 20/134 (14%), Positives = 43/134 (32%), Gaps = 6/134 (4%)

Query: 97  IPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFL 156
           +   +          L    L       +        ++   +  +      I  N+P L
Sbjct: 12  LKLIMSKRYDGSQQALDLKGLR--SDPDLVAQNIDVVLNRRSSMAA--TLRIIEENIPEL 67

Query: 157 EFLSLSLN--MFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRL 214
             L+LS N       + S +     L+ L+L+ N+       +     KL+ L++  N L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 215 QGEIPREFGNLTEL 228
                 +   ++ +
Sbjct: 128 SDTFRDQSTYISAI 141

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 39.4 bits (90), Expect = 2e-04
 Identities = 27/126 (21%), Positives = 46/126 (36%), Gaps = 3/126 (2%)

Query: 106 SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNM 165
              +++ +   L   IP  I        + L  N+L       +   LP L  L L  N 
Sbjct: 9   EGTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQ 65

Query: 166 FHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNL 225
             G  P+     ++++ L L  N       +    L +LK L +  N++   +P  F +L
Sbjct: 66  LTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHL 125

Query: 226 TELEQF 231
             L   
Sbjct: 126 NSLTSL 131

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.2 bits (79), Expect = 0.004
 Identities = 20/131 (15%), Positives = 47/131 (35%), Gaps = 5/131 (3%)

Query: 60  KNWNTSTPVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG 119
                               +  +  L +    ++         L  L++LNL  N++S 
Sbjct: 57  VKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISC 116

Query: 120 SIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTY 179
            +P +   + +L +++L  N  +      +     +L   SL+      G PS + +   
Sbjct: 117 VMPGSFEHLNSLTSLNLASNPFNCNCH--LAWFAEWLRKKSLNGGAARCGAPSKVRD--- 171

Query: 180 LRTLSLAYNDF 190
           ++   L +++F
Sbjct: 172 VQIKDLPHSEF 182

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 5e-04
 Identities = 9/43 (20%), Positives = 14/43 (32%)

Query: 143 GQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSL 185
            ++P ++         L +S    H      L N   LR  S 
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 4/93 (4%)

Query: 99  SQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF 158
           +Q  N    + L+L   ++   I +   T+     +    N++      +    L  L+ 
Sbjct: 12  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI---RKLDGFPLLRRLKT 67

Query: 159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFS 191
           L ++ N               L  L L  N   
Sbjct: 68  LLVNNNRICRIGEGLDQALPDLTELILTNNSLV 100

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 38/204 (18%), Positives = 61/204 (29%), Gaps = 29/204 (14%)

Query: 67  PVCNWTGVACDVHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIF 126
           P+C  + VA  +       +N    NL   +P  L        L+LS N L     +T+ 
Sbjct: 2   PICEVSKVASHLE------VNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLM 52

Query: 127 TIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFH------------------- 167
               L  ++L + +L+          L  L+     L                       
Sbjct: 53  PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112

Query: 168 -GGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLT 226
                  L     L+ L L  N+     P  +    KL+ L +  N L          L 
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 227 ELEQFSLPTNNLQVMILNFLQFYS 250
            L+   L  N+L  +   F   + 
Sbjct: 173 NLDTLLLQENSLYTIPKGFFGSHL 196

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.86
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.84
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.8
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.79
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.77
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.7
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.69
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.68
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.66
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.66
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.64
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.63
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.62
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.6
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.58
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.5
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.48
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.46
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.43
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.41
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.29
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.26
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.11
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.04
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.98
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.89
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.76
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.64
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.41
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.05
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.0
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.63
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.52

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.3e-30  Score=215.38  Aligned_cols=207  Identities=33%  Similarity=0.523  Sum_probs=158.2

Q ss_pred             CCChhhHHHHHHHHHhcCCCCCccccCCCCCCCCCCc--cceeeeCCC--CCeEEEEEeCCCCccc--cCCccCCCCCCC
Q 025426           34 SSTITDRDALLALKAHITHDPTNFLAKNWNTSTPVCN--WTGVACDVH--SHRVTVLNISSLNLRG--TIPSQLGNLSSL  107 (253)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~~l~~~w~~~~~~c~--~~g~~c~~~--~~~l~~L~l~~~~l~~--~~~~~~~~l~~L  107 (253)
                      -|.++|+++|++||+.++ +| ..+.+ |..+.++|.  |.||.|+..  ..+|+.|+|+++++.+  .+|..+..+++|
T Consensus         2 ~c~~~e~~aLl~~k~~~~-~~-~~l~s-W~~~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L   78 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLG-NP-TTLSS-WLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL   78 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTT-CC-GGGTT-CCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred             CCCHHHHHHHHHHHHHCC-CC-CcCCC-CCCCCCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccc
Confidence            378899999999999995 44 35777 888889994  999999843  3479999999999986  578999999999


Q ss_pred             CEEECCC-CCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeee
Q 025426          108 QSLNLSC-NRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLA  186 (253)
Q Consensus       108 ~~L~l~~-n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  186 (253)
                      ++|++++ |.+.|.+|..+.++++|++|++++|.+.+..+.. +..+.+|+++++++|.+.+.+|..+..++.+++++++
T Consensus        79 ~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~-~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~  157 (313)
T d1ogqa_          79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDF-LSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGG-GGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             cccccccccccccccccccccccccchhhhcccccccccccc-ccchhhhcccccccccccccCchhhccCcccceeecc
Confidence            9999986 7898899999999999999999999988444433 3556666666666666655555556555555555555


Q ss_pred             cCcCcccC-----------------------------------------------------------------------C
Q 025426          187 YNDFSGAV-----------------------------------------------------------------------P  195 (253)
Q Consensus       187 ~n~l~~~~-----------------------------------------------------------------------p  195 (253)
                      +|.+.+.+                                                                       +
T Consensus       158 ~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~  237 (313)
T d1ogqa_         158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL  237 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBG
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            55443211                                                                       1


Q ss_pred             ccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecch
Q 025426          196 REIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILN  244 (253)
Q Consensus       196 ~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~  244 (253)
                      ..+..++++++|++++|+++|.+|..++++++|++|+|++|+++|.+|.
T Consensus       238 ~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~  286 (313)
T d1ogqa_         238 GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC
Confidence            2234456777788888888878888888888888888888888877775

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.8e-21  Score=156.51  Aligned_cols=164  Identities=24%  Similarity=0.213  Sum_probs=124.0

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ++++.|+|++|.+++..+..|..+++|++|++++|.++ .++ .+..+++|++|++++|.+. ..+..+ ..+++|++|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~-~~~~~~-~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLG-QTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCS-SCCCCT-TTCTTCCEEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-ccccccccccccccccccc-cccccc-cccccccccc
Confidence            46888999999888666677888889999999998887 343 3467888888888888887 555544 6788888888


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +++|.+....+..+..+.++++|++++|.++...+..+..+++++.+++++|++++..+..|..+++|++|+|++|+++.
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~  186 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYT  186 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             ccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCcc
Confidence            88888876666677777788888888888776656666677788888888888876666777778888888888888774


Q ss_pred             ecchhhhhc
Q 025426          241 MILNFLQFY  249 (253)
Q Consensus       241 ~~p~~~~~l  249 (253)
                       +|+.+..+
T Consensus       187 -lp~~~~~~  194 (266)
T d1p9ag_         187 -IPKGFFGS  194 (266)
T ss_dssp             -CCTTTTTT
T ss_pred             -cChhHCCC
Confidence             44444333

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=4.6e-21  Score=155.47  Aligned_cols=170  Identities=21%  Similarity=0.224  Sum_probs=133.7

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCC-------------------------cCChhhhccCCCCEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSG-------------------------SIPSTIFTIYTLKNVS  135 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~~~~~l~~l~~L~~L~  135 (253)
                      ..+++|+|++|.++...+..|.++++|+.|++++|.+.+                         ..+..+..+++|++|+
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~  111 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH  111 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEe
Confidence            456788888888875556677788888888888776542                         1244566677888888


Q ss_pred             ccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCc
Q 025426          136 LGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQ  215 (253)
Q Consensus       136 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~  215 (253)
                      +++|.+. .++...+....+|+++++++|.+++..+..|..+++|++|++++|++++..+..+.++++|+.+++++|.++
T Consensus       112 l~~n~~~-~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~  190 (284)
T d1ozna_         112 LDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA  190 (284)
T ss_dssp             CTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             cCCcccc-cccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccc
Confidence            8888886 555555577788888888888888666677888888888888888888777778888888888888888888


Q ss_pred             ccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426          216 GEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       216 ~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  251 (253)
                      +..|..|..+++|++|++++|++.+.+|..|+.+++
T Consensus       191 ~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~  226 (284)
T d1ozna_         191 HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA  226 (284)
T ss_dssp             EECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred             ccChhHhhhhhhcccccccccccccccccccccccc
Confidence            777888888888888888888888888888877654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=1.9e-20  Score=153.13  Aligned_cols=180  Identities=19%  Similarity=0.314  Sum_probs=121.5

Q ss_pred             CCCCccceeeeCC---------CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEc
Q 025426           66 TPVCNWTGVACDV---------HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSL  136 (253)
Q Consensus        66 ~~~c~~~g~~c~~---------~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  136 (253)
                      ...|.+.++.|..         -+..+++|++++|+++...+..|..+++|++|++++|.+....|..|..+++|++|++
T Consensus         7 ~c~c~~~~~~C~~~~L~~lP~~l~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_           7 RCQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             TCEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEecCCEEEecCCCCCccCCCCCCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecc
Confidence            3446777777751         2356888999999888555557888888999999888888666777888888888888


Q ss_pred             cCCCCcCcCchhH-----------------------------------------------hcCCCCccEEEeecC-----
Q 025426          137 GKNKLSGQIPTNI-----------------------------------------------CSNLPFLEFLSLSLN-----  164 (253)
Q Consensus       137 ~~n~l~~~~~~~~-----------------------------------------------~~~l~~L~~L~l~~n-----  164 (253)
                      ++|+++ .+|...                                               +..+++|+++++++|     
T Consensus        87 ~~n~l~-~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          87 SKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             CSSCCS-BCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             cCCccC-cCccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            887664 333211                                               122333444444444     


Q ss_pred             ----------------cCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCC
Q 025426          165 ----------------MFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL  228 (253)
Q Consensus       165 ----------------~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  228 (253)
                                      ..+...+..+.+++.+++|++++|.+.+..+..+.++++|++|+|++|.++ .+|..+..+++|
T Consensus       166 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L  244 (305)
T d1xkua_         166 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI  244 (305)
T ss_dssp             CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSC
T ss_pred             CcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCC
Confidence                            433334445556666777777777777666666777777777888777776 556677777778


Q ss_pred             CEEeccCCCCceecchhhh
Q 025426          229 EQFSLPTNNLQVMILNFLQ  247 (253)
Q Consensus       229 ~~L~l~~n~l~~~~p~~~~  247 (253)
                      +.|++++|+|+.+....|.
T Consensus       245 ~~L~Ls~N~i~~i~~~~f~  263 (305)
T d1xkua_         245 QVVYLHNNNISAIGSNDFC  263 (305)
T ss_dssp             CEEECCSSCCCCCCTTSSS
T ss_pred             CEEECCCCccCccChhhcc
Confidence            8888877777766554443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.1e-19  Score=146.06  Aligned_cols=163  Identities=25%  Similarity=0.318  Sum_probs=143.3

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      ...+++.++++++ .+|..+.  ++++.|+|++|.+++..+..|..+++|++|++++|.++ .++.  +..+++|++|++
T Consensus        11 ~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~--~~~l~~L~~L~L   84 (266)
T d1p9ag_          11 SHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV--DGTLPVLGTLDL   84 (266)
T ss_dssp             TCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC--CSCCTTCCEEEC
T ss_pred             CCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc--cccccccccccc
Confidence            3455688999998 6777664  58999999999999666678999999999999999998 7775  367999999999


Q ss_pred             ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCcee
Q 025426          162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM  241 (253)
Q Consensus       162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  241 (253)
                      ++|+++ ..+..+..+++|++|++++|.+.+..+..+..+.++++|++++|.+....+..+..+++++.+++++|++++.
T Consensus        85 s~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~  163 (266)
T d1p9ag_          85 SHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTEL  163 (266)
T ss_dssp             CSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCC
T ss_pred             cccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccccc
Confidence            999998 5577889999999999999999977788888999999999999999977788889999999999999999999


Q ss_pred             cchhhhhccc
Q 025426          242 ILNFLQFYSS  251 (253)
Q Consensus       242 ~p~~~~~l~~  251 (253)
                      ++..|..+++
T Consensus       164 ~~~~~~~l~~  173 (266)
T d1p9ag_         164 PAGLLNGLEN  173 (266)
T ss_dssp             CTTTTTTCTT
T ss_pred             Cccccccccc
Confidence            9988887764

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=7.4e-20  Score=139.95  Aligned_cols=128  Identities=21%  Similarity=0.241  Sum_probs=97.6

Q ss_pred             EEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCc-CChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426           85 VLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGS-IPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL  163 (253)
Q Consensus        85 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  163 (253)
                      +++.++++++ .+|..+.  +++++|++++|.++.. .+..|..+++|++|++++|.+. .+++..|..+++|++|++++
T Consensus        12 ~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          12 TVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             EEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCS
T ss_pred             EEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeeecc
Confidence            4556667776 5666553  5788888888888643 3556677888888888888887 66666667788888888888


Q ss_pred             CcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcc
Q 025426          164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQG  216 (253)
Q Consensus       164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~  216 (253)
                      |+++...+..|.++++|++|+|++|+++...+..|..+++|+++++++|++..
T Consensus        88 N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            88886666778888888888888888887777778888888888888888763

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=6.7e-19  Score=142.56  Aligned_cols=143  Identities=23%  Similarity=0.255  Sum_probs=131.2

Q ss_pred             CccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCC
Q 025426           98 PSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNC  177 (253)
Q Consensus        98 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l  177 (253)
                      +..|.++++|+.|++++|.+....+..+....+|+.+++++|.++ .+++..|..+.+|++|++++|.+++..+..|.++
T Consensus        98 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l  176 (284)
T d1ozna_          98 PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL  176 (284)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             chhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhcccccCcccccchhhhccc
Confidence            556778899999999999998667777888999999999999998 8888777889999999999999997778889999


Q ss_pred             CCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCcee
Q 025426          178 TYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVM  241 (253)
Q Consensus       178 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  241 (253)
                      ++|+++++++|++++..|..|..+++|++|++++|.+.+..+..|+.+++|++|++++|++...
T Consensus       177 ~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~  240 (284)
T d1ozna_         177 HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCD  240 (284)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECS
T ss_pred             cccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCC
Confidence            9999999999999988999999999999999999999988889999999999999999998744

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.77  E-value=1.3e-18  Score=132.87  Aligned_cols=133  Identities=22%  Similarity=0.308  Sum_probs=120.0

Q ss_pred             CCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeee
Q 025426          107 LQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLA  186 (253)
Q Consensus       107 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~  186 (253)
                      .+.++.++++++ .+|..+.  .++++|++++|.+++.++...|..+++|++|++++|.++...+..|..+++|++|+++
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence            457899999998 7787653  6899999999999866777777899999999999999998888999999999999999


Q ss_pred             cCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceec
Q 025426          187 YNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMI  242 (253)
Q Consensus       187 ~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  242 (253)
                      +|+++...+..|.++++|++|+|++|++++..+++|..+++|++|++++|++....
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            99999888888999999999999999999888889999999999999999987544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.76  E-value=8.6e-19  Score=143.74  Aligned_cols=145  Identities=30%  Similarity=0.499  Sum_probs=134.2

Q ss_pred             CCCCEEECCCCCCCC--cCChhhhccCCCCEEEccC-CCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcc
Q 025426          105 SSLQSLNLSCNRLSG--SIPSTIFTIYTLKNVSLGK-NKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLR  181 (253)
Q Consensus       105 ~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~  181 (253)
                      .+++.|+++++.+.+  .+|..+.++++|++|++++ |++.|.+|+.+ .++++|++|++++|.+.+..+..+..+..|+
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~  128 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCcccccccccccccccccccccc-ccccccchhhhccccccccccccccchhhhc
Confidence            478999999999987  5789999999999999997 88999999987 8899999999999999988888899999999


Q ss_pred             eEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCC-CEEeccCCCCceecchhhhhcc
Q 025426          182 TLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL-EQFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       182 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L-~~L~l~~n~l~~~~p~~~~~l~  250 (253)
                      ++++++|.+.+.+|..+.+++.++++++++|.+.+.+|..+..+..+ +.+++++|++++..|..+..+.
T Consensus       129 ~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~  198 (313)
T d1ogqa_         129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN  198 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC
T ss_pred             ccccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccc
Confidence            99999999999999999999999999999999999999999988776 8999999999999999887765

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=1.7e-17  Score=127.30  Aligned_cols=156  Identities=26%  Similarity=0.368  Sum_probs=130.0

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      .+++.|+++++++.. +. .+..+++|++|++++|.+++. + .+..+++|++|++++|.+. .++.  +..+++|++++
T Consensus        40 ~~l~~L~l~~~~i~~-l~-~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~-~~~~--l~~l~~L~~L~  112 (199)
T d2omxa2          40 DQVTTLQADRLGIKS-ID-GVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA-DITP--LANLTNLTGLT  112 (199)
T ss_dssp             TTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-CCGG--GTTCTTCSEEE
T ss_pred             cCCCEEECCCCCCCC-cc-ccccCCCcCcCccccccccCc-c-cccCCcccccccccccccc-cccc--ccccccccccc
Confidence            568999999999983 33 477899999999999999853 3 3889999999999999997 6765  47899999999


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +++|.....  ..+..+++|+.+++++|++.. + +.+..++++++|++.+|.+++. + .++++++|+.|++++|++++
T Consensus       113 l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~  186 (199)
T d2omxa2         113 LFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD  186 (199)
T ss_dssp             CCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC
T ss_pred             ccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC
Confidence            999988643  347789999999999999873 3 4588899999999999999853 3 48999999999999999987


Q ss_pred             ecchhhhhccc
Q 025426          241 MILNFLQFYSS  251 (253)
Q Consensus       241 ~~p~~~~~l~~  251 (253)
                      +.  .+..+++
T Consensus       187 i~--~l~~L~~  195 (199)
T d2omxa2         187 IS--VLAKLTN  195 (199)
T ss_dssp             CG--GGGGCTT
T ss_pred             Cc--cccCCCC
Confidence            53  3555553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=8.4e-17  Score=124.41  Aligned_cols=156  Identities=21%  Similarity=0.278  Sum_probs=120.5

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ..++.|+++++.+.+. + .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+++ .++.  +..+++|+.|+
T Consensus        46 ~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~-~l~~--l~~l~~L~~L~  118 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVK-DLSS--LKDLKKLKSLS  118 (210)
T ss_dssp             HTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-CGGG--GTTCTTCCEEE
T ss_pred             cCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccc-cccc--ccccccccccc
Confidence            3578889999988743 3 36778899999999998874 33 3678889999999999987 6664  47788999999


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +++|.+..  ...+..++.++.+++++|.+++  +..+..+++|+++++++|++++. + .+..+++|+.|++++|++++
T Consensus       119 l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         119 LEHNGISD--INGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CTTSCCCC--CGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccc--cccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC
Confidence            99988763  2357788889999999998873  34566788899999999988753 3 38888999999999999886


Q ss_pred             ecchhhhhccc
Q 025426          241 MILNFLQFYSS  251 (253)
Q Consensus       241 ~~p~~~~~l~~  251 (253)
                      +.  .+.++++
T Consensus       193 l~--~l~~l~~  201 (210)
T d1h6ta2         193 LR--ALAGLKN  201 (210)
T ss_dssp             CG--GGTTCTT
T ss_pred             Ch--hhcCCCC
Confidence            53  3666553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=1.1e-16  Score=130.48  Aligned_cols=164  Identities=21%  Similarity=0.247  Sum_probs=116.5

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      ..+.++=++++++ .+|..+.  +++++|++++|+++...+..|..+++|++|++++|.+. .+++..|..+++|++|++
T Consensus        11 ~~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~-~i~~~~f~~l~~L~~L~l   86 (305)
T d1xkua_          11 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYL   86 (305)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEEC
T ss_pred             cCCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhcccccccccccccccc-ccchhhhhCCCccCEecc
Confidence            3456788888888 7777664  68999999999998555567999999999999999999 776666689999999999


Q ss_pred             ecCcCCCCCCcc------------------------------------------------CCCCCCcceEeeecCc----
Q 025426          162 SLNMFHGGIPST------------------------------------------------LSNCTYLRTLSLAYND----  189 (253)
Q Consensus       162 ~~n~~~~~~~~~------------------------------------------------~~~l~~L~~L~L~~n~----  189 (253)
                      ++|+++. +|..                                                +..+++|+++++++|.    
T Consensus        87 ~~n~l~~-l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l  165 (305)
T d1xkua_          87 SKNQLKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI  165 (305)
T ss_dssp             CSSCCSB-CCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred             cCCccCc-CccchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcccc
Confidence            9998762 2211                                                1112334444444444    


Q ss_pred             -----------------CcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhccc
Q 025426          190 -----------------FSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSS  251 (253)
Q Consensus       190 -----------------l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~  251 (253)
                                       ..+..+..+.+++.+++|++++|.+.+..+..+..+++|++|++++|+++.+ |++|..+++
T Consensus       166 ~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~l-p~~l~~l~~  243 (305)
T d1xkua_         166 PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKV-PGGLADHKY  243 (305)
T ss_dssp             CSSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSC-CTTTTTCSS
T ss_pred             CcccCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccccceeeeccccccccc-ccccccccC
Confidence                             4444455566666777777777777766667777777777777777777644 456665543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.69  E-value=2.4e-16  Score=123.14  Aligned_cols=156  Identities=26%  Similarity=0.365  Sum_probs=92.2

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ++++.|++++|.+.+..+  +..+++++.+++++|.++ .+ ..+..+++|++++++++... .++.  +...+.++.+.
T Consensus        63 ~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i-~~l~~l~~L~~l~l~~~~~~-~~~~--~~~~~~~~~l~  135 (227)
T d1h6ua2          63 NNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NV-SAIAGLQSIKTLDLTSTQIT-DVTP--LAGLSNLQVLY  135 (227)
T ss_dssp             TTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CC-GGGTTCTTCCEEECTTSCCC-CCGG--GTTCTTCCEEE
T ss_pred             CCCcEeecCCceeecccc--cccccccccccccccccc-cc-cccccccccccccccccccc-ccch--hccccchhhhh
Confidence            344444444444432211  344444444444444443 11 12344444444444444443 2211  12334444444


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      ++++.+..  ...+...++|++|++++|.+.+.  ..+.++++|+.|++++|++++ ++ .+..+++|++|++++|++++
T Consensus       136 ~~~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~  209 (227)
T d1h6ua2         136 LDLNQITN--ISPLAGLTNLQYLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISD  209 (227)
T ss_dssp             CCSSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCB
T ss_pred             chhhhhch--hhhhccccccccccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCC
Confidence            44444432  12356677899999999988743  347889999999999999985 33 48899999999999999998


Q ss_pred             ecchhhhhccc
Q 025426          241 MILNFLQFYSS  251 (253)
Q Consensus       241 ~~p~~~~~l~~  251 (253)
                      ++|  ++++++
T Consensus       210 i~~--l~~l~~  218 (227)
T d1h6ua2         210 VSP--LANTSN  218 (227)
T ss_dssp             CGG--GTTCTT
T ss_pred             Ccc--cccCCC
Confidence            765  555553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.68  E-value=2.8e-16  Score=121.38  Aligned_cols=144  Identities=32%  Similarity=0.381  Sum_probs=121.5

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF  158 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  158 (253)
                      ..+++++|++++|.+++ ++ .+..+++|+.|++++|.++. ++ .+..+++|+.|++++|.+. .++.  +..+++++.
T Consensus        66 ~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~-~~~~--l~~l~~l~~  138 (210)
T d1h6ta2          66 YLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGIS-DING--LVHLPQLES  138 (210)
T ss_dssp             GCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCC-CCGG--GGGCTTCCE
T ss_pred             hCCCCCEEeCCCccccC-cc-ccccCccccccccccccccc-cc-ccccccccccccccccccc-cccc--ccccccccc
Confidence            35789999999999985 33 36789999999999999984 44 5888999999999999987 6654  478899999


Q ss_pred             EEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccC
Q 025426          159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPT  235 (253)
Q Consensus       159 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  235 (253)
                      +++++|.+++  +..+..+++|+++++++|++++. + .+.++++|+.|++++|++++ ++ .+..+++|++|++++
T Consensus       139 l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         139 LYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             EECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEE
T ss_pred             cccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEccC
Confidence            9999999874  34567889999999999999853 3 38899999999999999984 44 599999999999874

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=7.1e-17  Score=119.69  Aligned_cols=128  Identities=15%  Similarity=0.092  Sum_probs=79.2

Q ss_pred             CCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCc
Q 025426          101 LGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYL  180 (253)
Q Consensus       101 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L  180 (253)
                      +.+..++++|++++|+++ .++..+..+++|++|++++|.+. +++.  +..+++|++|++++|.++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~~--~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLDG--FPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EECC--CCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccCC--cccCcchhhhhcccccccCCCcccccccccc
Confidence            344556666777777666 34444555666777777777766 5532  3566677777777777664434444566677


Q ss_pred             ceEeeecCcCcccCC-ccccCCCCCCeeecccCcCcccC---ChhhcCCCCCCEEe
Q 025426          181 RTLSLAYNDFSGAVP-REIGNLTKLKVLYIGANRLQGEI---PREFGNLTELEQFS  232 (253)
Q Consensus       181 ~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~---~~~~~~l~~L~~L~  232 (253)
                      ++|++++|++..... ..+..+++|++|++++|+++...   +..+..+++|++||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            777777777663211 34566777777777777776322   23466777887776

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=7.3e-16  Score=128.91  Aligned_cols=156  Identities=26%  Similarity=0.402  Sum_probs=110.6

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ++++.|++++|.+++ + +.+..+++|+.|++++|.+.+..  .+..+++|++|+++++.+. .+++  +..+..++.++
T Consensus       219 ~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~-~~~~--~~~~~~l~~l~  291 (384)
T d2omza2         219 TNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQIS-NISP--LAGLTALTNLE  291 (384)
T ss_dssp             TTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSEEE
T ss_pred             CCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccCCEeeccCcccC-CCCc--ccccccccccc
Confidence            456666666666652 2 23556667777777777665322  2556667777777777766 4443  24566677777


Q ss_pred             eecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          161 LSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       161 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      +.+|.+++  ...+..++++++|++++|++++..  .+..+++|+.|++++|++++ ++ .++.+++|++|++++|++++
T Consensus       292 ~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~  365 (384)
T d2omza2         292 LNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISD  365 (384)
T ss_dssp             CCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCB
T ss_pred             cccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCC
Confidence            77776653  234677788999999999998543  37788999999999999984 44 68999999999999999998


Q ss_pred             ecchhhhhccc
Q 025426          241 MILNFLQFYSS  251 (253)
Q Consensus       241 ~~p~~~~~l~~  251 (253)
                      .+|  ++++++
T Consensus       366 l~~--l~~l~~  374 (384)
T d2omza2         366 LTP--LANLTR  374 (384)
T ss_dssp             CGG--GTTCTT
T ss_pred             Chh--hccCCC
Confidence            876  666653

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.2e-16  Score=123.42  Aligned_cols=168  Identities=17%  Similarity=0.121  Sum_probs=121.1

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcC-ChhhhccCCCCEEEccC-CCCcCcCchhHhcCCCCccE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSI-PSTIFTIYTLKNVSLGK-NKLSGQIPTNICSNLPFLEF  158 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~-n~l~~~~~~~~~~~l~~L~~  158 (253)
                      .++++|++++|.++...+..|.++++|++|++++|.+...+ +..+..+++++++++.. |.+. ..++..|..+++|++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQY  107 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-EECTTSEECCTTCCE
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-ccccccccccccccc
Confidence            46899999999998656667899999999999999887543 44677788899988765 5666 566666688899999


Q ss_pred             EEeecCcCCCCCCcc-C------------------------CCC-CCcceEeeecCcCcccCCccccCCCCCCee-eccc
Q 025426          159 LSLSLNMFHGGIPST-L------------------------SNC-TYLRTLSLAYNDFSGAVPREIGNLTKLKVL-YIGA  211 (253)
Q Consensus       159 L~l~~n~~~~~~~~~-~------------------------~~l-~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L-~l~~  211 (253)
                      +++++|.++...+.. +                        .++ ..+..+++.+|+++.. +....+..++..+ ++.+
T Consensus       108 l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i-~~~~~~~~~l~~~~~l~~  186 (242)
T d1xwdc1         108 LLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI-HNCAFNGTQLDELNLSDN  186 (242)
T ss_dssp             EEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE-CTTTTTTCCEEEEECTTC
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccc-ccccccchhhhccccccc
Confidence            999988876322211 1                        112 2455566667766633 3333334444444 5677


Q ss_pred             CcCcccCChhhcCCCCCCEEeccCCCCceecchhhhhcc
Q 025426          212 NRLQGEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       212 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~  250 (253)
                      |.++...+..|.++++|+.|++++|+++..++..|++++
T Consensus       187 n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~  225 (242)
T d1xwdc1         187 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLK  225 (242)
T ss_dssp             TTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCC
T ss_pred             cccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCc
Confidence            788755566789999999999999999988888888775

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.65  E-value=8.2e-16  Score=108.69  Aligned_cols=117  Identities=21%  Similarity=0.297  Sum_probs=62.7

Q ss_pred             EEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecC
Q 025426          109 SLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYN  188 (253)
Q Consensus       109 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n  188 (253)
                      .|++++|+++ .++ .+..+++|++|++++|.++ .+|+.+ ..+++|++|++++|.++. +| .+..+++|+++++++|
T Consensus         2 ~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~-~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           2 VLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPAL-AALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             EEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGG-GGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred             EEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhh-hhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence            4556666655 333 2555566666666666665 555543 456666666666666652 22 3555666666666666


Q ss_pred             cCcccC-CccccCCCCCCeeecccCcCccc---CChhhcCCCCCCEE
Q 025426          189 DFSGAV-PREIGNLTKLKVLYIGANRLQGE---IPREFGNLTELEQF  231 (253)
Q Consensus       189 ~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L  231 (253)
                      ++++.. ...+..+++|++|++++|++++.   .......+|+++.+
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            665322 13455556666666666665431   12233445555544

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.64  E-value=2.2e-15  Score=115.33  Aligned_cols=140  Identities=29%  Similarity=0.400  Sum_probs=117.1

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF  158 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  158 (253)
                      ..+++++|++++|++++. ++ +..+++|+.|++++|.+. .++ .+..+++|++|++++|.+. .++.  +..+++|+.
T Consensus        60 ~l~nL~~L~Ls~N~l~~~-~~-l~~l~~L~~L~l~~n~~~-~~~-~l~~l~~L~~L~l~~~~~~-~~~~--~~~l~~L~~  132 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDI-TP-LKNLTKLVDILMNNNQIA-DIT-PLANLTNLTGLTLFNNQIT-DIDP--LKNLTNLNR  132 (199)
T ss_dssp             GCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-CCG-GGTTCTTCSEEECCSSCCC-CCGG--GTTCTTCSE
T ss_pred             cCCCcCcCccccccccCc-cc-ccCCcccccccccccccc-ccc-ccccccccccccccccccc-cccc--cchhhhhHH
Confidence            357899999999999854 33 889999999999999987 343 4889999999999999987 5443  478999999


Q ss_pred             EEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEE
Q 025426          159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQF  231 (253)
Q Consensus       159 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  231 (253)
                      +++++|.+.. + +.+..++++++|++.+|++++. + .+.++++|++|++++|++++ ++ .+..+++|+.|
T Consensus       133 L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         133 LELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             EECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             hhhhhhhhcc-c-ccccccccccccccccccccCC-c-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            9999999873 3 3588899999999999999853 3 48899999999999999985 43 58889998876

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=1.3e-15  Score=107.59  Aligned_cols=104  Identities=24%  Similarity=0.336  Sum_probs=91.4

Q ss_pred             CEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeeccc
Q 025426          132 KNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGA  211 (253)
Q Consensus       132 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  211 (253)
                      |+|++++|.++ .++. + ..+.+|++|++++|.++ .+|..+..+++|++|++++|.+++ +| .+.++++|++|++++
T Consensus         1 R~L~Ls~n~l~-~l~~-l-~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~   74 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-L-EQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN   74 (124)
T ss_dssp             SEEECTTSCCS-SCCC-G-GGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred             CEEEcCCCCCC-CCcc-c-ccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCC
Confidence            68999999998 7765 4 78999999999999998 678789999999999999999984 44 588999999999999


Q ss_pred             CcCcccC-ChhhcCCCCCCEEeccCCCCcee
Q 025426          212 NRLQGEI-PREFGNLTELEQFSLPTNNLQVM  241 (253)
Q Consensus       212 n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~  241 (253)
                      |++++.. ...+..+++|+.|++++|++++.
T Consensus        75 N~i~~~~~~~~l~~~~~L~~L~l~~N~i~~~  105 (124)
T d1dcea3          75 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE  105 (124)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGS
T ss_pred             CccCCCCCchhhcCCCCCCEEECCCCcCCcC
Confidence            9998543 36789999999999999999754

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.8e-16  Score=115.70  Aligned_cols=124  Identities=19%  Similarity=0.216  Sum_probs=104.5

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEE
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLS  160 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  160 (253)
                      ..+++|++++|+|+ .++..+..+++|+.|++++|.++ .++ .+..+++|++|++++|.++ .+++.++..+++|++|+
T Consensus        18 ~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~-~l~-~~~~l~~L~~L~ls~N~i~-~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          18 VRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-KLD-GFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCC-EEC-CCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEE
T ss_pred             CcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCC-ccC-CcccCcchhhhhccccccc-CCCccccccccccccce
Confidence            46899999999998 55666678999999999999998 443 5888999999999999998 88887778899999999


Q ss_pred             eecCcCCCCCC-ccCCCCCCcceEeeecCcCcccCCc----cccCCCCCCeeec
Q 025426          161 LSLNMFHGGIP-STLSNCTYLRTLSLAYNDFSGAVPR----EIGNLTKLKVLYI  209 (253)
Q Consensus       161 l~~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~----~l~~l~~L~~L~l  209 (253)
                      +++|.++.... ..+..+++|+++++.+|+++ ..|.    .+..+++|++||-
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETT
T ss_pred             eccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeCC
Confidence            99999974322 46788999999999999997 3443    4677899999884

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.60  E-value=3.6e-15  Score=124.57  Aligned_cols=146  Identities=29%  Similarity=0.423  Sum_probs=123.2

Q ss_pred             CCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccE
Q 025426           79 HSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEF  158 (253)
Q Consensus        79 ~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~  158 (253)
                      ..++++.+++.+|.+++..+  +..+++|+.|+++++.+.+. + .+..++.++.+++.+|.+. .++.  +..++++++
T Consensus       239 ~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~~n~l~-~~~~--~~~~~~l~~  311 (384)
T d2omza2         239 SLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNI-S-PLAGLTALTNLELNENQLE-DISP--ISNLKNLTY  311 (384)
T ss_dssp             GCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCS-CCGG--GGGCTTCSE
T ss_pred             cccccchhccccCccCCCCc--ccccccCCEeeccCcccCCC-C-ccccccccccccccccccc-cccc--cchhcccCe
Confidence            34679999999999985433  77889999999999999743 3 4778899999999999998 5543  377899999


Q ss_pred             EEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCC
Q 025426          159 LSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNN  237 (253)
Q Consensus       159 L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  237 (253)
                      |++++|.+++..  .+..+++|++|++++|++++ ++ .+.++++|++|++++|++++..|  +.++++|+.|++++|.
T Consensus       312 L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~Na  384 (384)
T d2omza2         312 LTLYFNNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQA  384 (384)
T ss_dssp             EECCSSCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCEE
T ss_pred             EECCCCCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCCc
Confidence            999999998543  37889999999999999984 44 68899999999999999996544  8999999999999883

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.58  E-value=1.2e-14  Score=113.34  Aligned_cols=145  Identities=20%  Similarity=0.326  Sum_probs=118.5

Q ss_pred             CCCCeEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCcc
Q 025426           78 VHSHRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLE  157 (253)
Q Consensus        78 ~~~~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  157 (253)
                      ....+++.++++++.++ .++ .+..+++|+.++++++...+  ...+...+.++.+.++++.+. ....  +..+++|+
T Consensus        82 ~~l~~l~~l~~~~n~~~-~i~-~l~~l~~L~~l~l~~~~~~~--~~~~~~~~~~~~l~~~~~~~~-~~~~--~~~~~~L~  154 (227)
T d1h6ua2          82 KNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDLNQIT-NISP--LAGLTNLQ  154 (227)
T ss_dssp             TTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCC--CGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCC
T ss_pred             ccccccccccccccccc-ccc-cccccccccccccccccccc--cchhccccchhhhhchhhhhc-hhhh--hccccccc
Confidence            45578999999999887 343 47889999999999998763  344677889999999999987 3333  36788999


Q ss_pred             EEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccC
Q 025426          158 FLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPT  235 (253)
Q Consensus       158 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  235 (253)
                      +|++++|.+++.  ..+.++++|++|++++|++++ ++ .+.++++|++|++++|++++. + .++++++|+.|++++
T Consensus       155 ~L~l~~n~~~~~--~~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt~i-~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         155 YLSIGNAQVSDL--TPLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQISDV-S-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCCBC-G-GGTTCTTCCEEEEEE
T ss_pred             cccccccccccc--hhhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCCCC-c-ccccCCCCCEEEeeC
Confidence            999999998743  347889999999999999985 33 478899999999999999854 3 389999999999874

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.4e-14  Score=105.14  Aligned_cols=104  Identities=19%  Similarity=0.137  Sum_probs=74.7

Q ss_pred             EEEeCCCCccccCCccCCCCCCCCEEECCCC-CCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec
Q 025426           85 VLNISSLNLRGTIPSQLGNLSSLQSLNLSCN-RLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL  163 (253)
Q Consensus        85 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~  163 (253)
                      .++..++++. ..|..+..+++|++|++.+| .++...+.+|..+++|+.|++++|+++ .+++..|..+++|++|++++
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-CcccccccccccccceeccC
Confidence            4566666666 56666777888888888766 477555667778888888888888887 77777677888888888888


Q ss_pred             CcCCCCCCccCCCCCCcceEeeecCcCc
Q 025426          164 NMFHGGIPSTLSNCTYLRTLSLAYNDFS  191 (253)
Q Consensus       164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~  191 (253)
                      |+++...+..|.. .+|+.|++++|.+.
T Consensus        90 N~l~~l~~~~~~~-~~l~~L~L~~Np~~  116 (156)
T d2ifga3          90 NALESLSWKTVQG-LSLQELVLSGNPLH  116 (156)
T ss_dssp             SCCSCCCSTTTCS-CCCCEEECCSSCCC
T ss_pred             CCCcccChhhhcc-ccccccccCCCccc
Confidence            8887333344433 46778888888764

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.48  E-value=1.3e-16  Score=122.25  Aligned_cols=131  Identities=24%  Similarity=0.319  Sum_probs=103.7

Q ss_pred             cCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCC
Q 025426           96 TIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLS  175 (253)
Q Consensus        96 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~  175 (253)
                      .++..+..+++|+.|++++|.++ .++ .+..+++|++|++++|.++ .++... ..+++|++|++++|.++. + ..+.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~-~~~~~L~~L~l~~N~i~~-l-~~~~  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIK-KIENLD-AVADTLEELWISYNQIAS-L-SGIE  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEEC-SCSSHH-HHHHHCCEEECSEEECCC-H-HHHH
T ss_pred             hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccccc-cccccc-cccccccccccccccccc-c-cccc
Confidence            45566788899999999999988 444 5889999999999999998 777543 455689999999999974 3 3477


Q ss_pred             CCCCcceEeeecCcCcccCC-ccccCCCCCCeeecccCcCcccCCh----------hhcCCCCCCEEe
Q 025426          176 NCTYLRTLSLAYNDFSGAVP-REIGNLTKLKVLYIGANRLQGEIPR----------EFGNLTELEQFS  232 (253)
Q Consensus       176 ~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~l~~n~l~~~~~~----------~~~~l~~L~~L~  232 (253)
                      .+++|++|++++|+++.... ..+..+++|++|++++|++....+.          .+..+++|+.||
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            88899999999999984322 4678899999999999998653332          256789999987

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.6e-13  Score=106.42  Aligned_cols=105  Identities=19%  Similarity=0.218  Sum_probs=86.6

Q ss_pred             EEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeec-
Q 025426           85 VLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSL-  163 (253)
Q Consensus        85 ~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~-  163 (253)
                      .++.++.+++ .+|..+.  ++++.|++++|.++...+..|.++++|++|++++|.+...++...|..++.++++.+.. 
T Consensus        12 ~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~   88 (242)
T d1xwdc1          12 VFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA   88 (242)
T ss_dssp             EEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECC
T ss_pred             EEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccc
Confidence            5666677777 6776553  58999999999998555567899999999999999998667777778899999999875 


Q ss_pred             CcCCCCCCccCCCCCCcceEeeecCcCcc
Q 025426          164 NMFHGGIPSTLSNCTYLRTLSLAYNDFSG  192 (253)
Q Consensus       164 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  192 (253)
                      |.+....+..|..+++|+++++.+|.+..
T Consensus        89 n~l~~~~~~~~~~l~~L~~l~l~~~~l~~  117 (242)
T d1xwdc1          89 NNLLYINPEAFQNLPNLQYLLISNTGIKH  117 (242)
T ss_dssp             TTCCEECTTSEECCTTCCEEEEESCCCCS
T ss_pred             ccccccccccccccccccccccchhhhcc
Confidence            56776777888999999999999998863

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.2e-13  Score=99.83  Aligned_cols=144  Identities=15%  Similarity=0.095  Sum_probs=96.6

Q ss_pred             CCCEEECCCCCCCCcCChhhhccCCCCEEEccCCC-CcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEe
Q 025426          106 SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNK-LSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLS  184 (253)
Q Consensus       106 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  184 (253)
                      ..+.++.+++.+. ..|..+..+++|++|++++|. ++ .++...|.++++|+.|++++|.++...+.+|..+++|++|+
T Consensus         9 ~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3           9 GSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCCeEEecCCCCc-cCcccccCccccCeeecCCCcccc-ccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            3456777777776 567777788888888887664 76 77777778888888889888888866677888888888899


Q ss_pred             eecCcCcccCCccccCCCCCCeeecccCcCc-ccCChhhcCCCCCCEEeccCCCCceecchhhhhcccC
Q 025426          185 LAYNDFSGAVPREIGNLTKLKVLYIGANRLQ-GEIPREFGNLTELEQFSLPTNNLQVMILNFLQFYSSS  252 (253)
Q Consensus       185 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~p~~~~~l~~~  252 (253)
                      |++|+++ .+|.......+|+.|+|++|++. +.-...+..+.......+..++++-..|..+++++.+
T Consensus        87 Ls~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p~~  154 (156)
T d2ifga3          87 LSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNA  154 (156)
T ss_dssp             CCSSCCS-CCCSTTTCSCCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCCCT
T ss_pred             ccCCCCc-ccChhhhccccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCCcc
Confidence            9888888 44544444457888888888875 1111122211111222333455555555556665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.43  E-value=2e-15  Score=115.41  Aligned_cols=131  Identities=24%  Similarity=0.345  Sum_probs=104.8

Q ss_pred             CCEEECCCC--CCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEe
Q 025426          107 LQSLNLSCN--RLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLS  184 (253)
Q Consensus       107 L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  184 (253)
                      .+.+++.+.  .+. .++..+..+++|++|++++|.++ .++. + ..+++|++|++++|.++ .++..+..+++|++|+
T Consensus        25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~~-l-~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KISS-L-SGMENLRILSLGRNLIK-KIENLDAVADTLEELW   99 (198)
T ss_dssp             CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCCC-H-HHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred             cceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Cccc-c-cCCccccChhhcccccc-cccccccccccccccc
Confidence            444555543  233 56778999999999999999998 7764 4 78899999999999998 5565555567899999


Q ss_pred             eecCcCcccCCccccCCCCCCeeecccCcCcccCC-hhhcCCCCCCEEeccCCCCceecch
Q 025426          185 LAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP-REFGNLTELEQFSLPTNNLQVMILN  244 (253)
Q Consensus       185 L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~p~  244 (253)
                      +++|.++..  +.+..+++|++|++++|++++... ..+..+++|+.|++++|++....+.
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  158 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCT
T ss_pred             ccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCccc
Confidence            999999843  347788999999999999985322 5689999999999999998766554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=4.3e-14  Score=113.91  Aligned_cols=156  Identities=19%  Similarity=0.214  Sum_probs=77.4

Q ss_pred             CeEEEEEeCCCCccccCCccCCCCCCCCEEECCCC-CCCCc-CChhhhccCCCCEEEccCCC-CcCc-CchhHhcCCCCc
Q 025426           81 HRVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCN-RLSGS-IPSTIFTIYTLKNVSLGKNK-LSGQ-IPTNICSNLPFL  156 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~~~~~l~~L  156 (253)
                      +++++|+++++.+.+.....+..+++|+.|++++| .++.. +......+++|++|++++|. ++.. +...+....++|
T Consensus        71 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          71 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            34555555555544444444444555555555553 23211 11112234555555555532 2211 111121223445


Q ss_pred             cEEEeecCc--CCCC-CCccCCCCCCcceEeeecC-cCcccCCccccCCCCCCeeecccC-cCcccCChhhcCCCCCCEE
Q 025426          157 EFLSLSLNM--FHGG-IPSTLSNCTYLRTLSLAYN-DFSGAVPREIGNLTKLKVLYIGAN-RLQGEIPREFGNLTELEQF  231 (253)
Q Consensus       157 ~~L~l~~n~--~~~~-~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L  231 (253)
                      +.|+++++.  ++.. +...+..+++|++|++++| .+++.....+.++++|++|++++| .+++.....++++++|+.|
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L  230 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL  230 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEE
Confidence            555555431  2211 1112234567777777765 355555566667777777777774 4665555566777777777


Q ss_pred             eccCC
Q 025426          232 SLPTN  236 (253)
Q Consensus       232 ~l~~n  236 (253)
                      +++++
T Consensus       231 ~l~~~  235 (284)
T d2astb2         231 QVFGI  235 (284)
T ss_dssp             ECTTS
T ss_pred             eeeCC
Confidence            77765

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.29  E-value=2.6e-11  Score=99.26  Aligned_cols=35  Identities=29%  Similarity=0.401  Sum_probs=21.4

Q ss_pred             CCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCc
Q 025426          106 SLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLS  142 (253)
Q Consensus       106 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~  142 (253)
                      .|++|++++|.+. .+|. +..+++|++|+++++.+.
T Consensus        99 ~L~~L~L~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~  133 (353)
T d1jl5a_          99 LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK  133 (353)
T ss_dssp             TCCEEECCSSCCS-SCCC-CTTCTTCCEEECCSSCCS
T ss_pred             ccccccccccccc-cccc-hhhhccceeecccccccc
Confidence            4666666666665 3443 455667777777666543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.5e-12  Score=104.71  Aligned_cols=170  Identities=19%  Similarity=0.206  Sum_probs=119.7

Q ss_pred             CCCCeEEEEEeCCC-CccccC-CccCCCCCCCCEEECCCCC-CCCc-CChhhhc-cCCCCEEEccCCC--CcCcCchhHh
Q 025426           78 VHSHRVTVLNISSL-NLRGTI-PSQLGNLSSLQSLNLSCNR-LSGS-IPSTIFT-IYTLKNVSLGKNK--LSGQIPTNIC  150 (253)
Q Consensus        78 ~~~~~l~~L~l~~~-~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~-~~~~l~~-l~~L~~L~l~~n~--l~~~~~~~~~  150 (253)
                      ...++++.|+++++ .+++.. ......+++|++|++++|. ++.. ....+.. .++|+.|+++++.  ++......+.
T Consensus        92 ~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~  171 (284)
T d2astb2          92 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLV  171 (284)
T ss_dssp             TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHH
T ss_pred             hcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccc
Confidence            34578999999995 566332 2223567899999999974 4421 2233333 4789999999763  4433333444


Q ss_pred             cCCCCccEEEeecCc-CCCCCCccCCCCCCcceEeeecC-cCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCC
Q 025426          151 SNLPFLEFLSLSLNM-FHGGIPSTLSNCTYLRTLSLAYN-DFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTEL  228 (253)
Q Consensus       151 ~~l~~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  228 (253)
                      ..+++|++|++++|. +++.....+..+++|++|++++| .+++.....+.++++|+.|+++++.-.+.++.....+++|
T Consensus       172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L  251 (284)
T d2astb2         172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL  251 (284)
T ss_dssp             HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS
T ss_pred             cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc
Confidence            678999999999974 77667778889999999999995 6776666778889999999999983222333334567765


Q ss_pred             CEEeccCCCCceecchhhhhcc
Q 025426          229 EQFSLPTNNLQVMILNFLQFYS  250 (253)
Q Consensus       229 ~~L~l~~n~l~~~~p~~~~~l~  250 (253)
                      +   +..+++++..++.+++..
T Consensus       252 ~---i~~~~ls~~~~~~~~~~~  270 (284)
T d2astb2         252 Q---INCSHFTTIARPTIGNKK  270 (284)
T ss_dssp             E---ESCCCSCCTTCSSCSSTT
T ss_pred             c---ccCccCCCCCCCccCccc
Confidence            4   577888887776666543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.11  E-value=6.4e-10  Score=90.74  Aligned_cols=138  Identities=28%  Similarity=0.463  Sum_probs=95.8

Q ss_pred             eEEEEEeCCCCccccCCccCCCCCCCCEEECCCCCCCCcCChhhhccCCCCEEEccCCCCcCcCchhHhcCCCCccEEEe
Q 025426           82 RVTVLNISSLNLRGTIPSQLGNLSSLQSLNLSCNRLSGSIPSTIFTIYTLKNVSLGKNKLSGQIPTNICSNLPFLEFLSL  161 (253)
Q Consensus        82 ~l~~L~l~~~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l  161 (253)
                      ++++|++++++++ .+|..   .++|++|++++|+++ .+|..   +.+|++|++++|+++ .++.    -.+.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~----lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhh----hccccccccc
Confidence            4678999999987 56653   468899999999988 66754   458899999999887 6653    1246899999


Q ss_pred             ecCcCCCCCCccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCChhhcCCCCCCEEeccCCCCce
Q 025426          162 SLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIPREFGNLTELEQFSLPTNNLQV  240 (253)
Q Consensus       162 ~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  240 (253)
                      ++|.++ .+|. +..+++|+++++.++.+.. .+..   ...+..+.+..+...  ....+..++.++.+++++|.+..
T Consensus       106 ~~n~l~-~lp~-~~~l~~L~~L~l~~~~~~~-~~~~---~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_         106 SNNQLE-KLPE-LQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CSSCCS-SCCC-CTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS
T ss_pred             cccccc-cccc-hhhhccceeeccccccccc-cccc---cccccchhhcccccc--ccccccccccceecccccccccc
Confidence            999987 4554 5778899999999888763 3322   234555555544432  23345566666677766666554

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.04  E-value=3.2e-11  Score=99.18  Aligned_cols=136  Identities=19%  Similarity=0.151  Sum_probs=75.2

Q ss_pred             CCCCEEECCCCCCCCc----CChhhhccCCCCEEEccCCCCcCcC----chhHhcCCCCccEEEeecCcCCCC----CCc
Q 025426          105 SSLQSLNLSCNRLSGS----IPSTIFTIYTLKNVSLGKNKLSGQI----PTNICSNLPFLEFLSLSLNMFHGG----IPS  172 (253)
Q Consensus       105 ~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~  172 (253)
                      +.|+.+++++|.+...    +...+...++|++|++++|.+....    ....+...++|++|++++|.++..    +..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            4455555555554321    2223344566777777777765210    111124566777777777776432    233


Q ss_pred             cCCCCCCcceEeeecCcCcccCCcc----ccC--CCCCCeeecccCcCcccC----Chhhc-CCCCCCEEeccCCCCce
Q 025426          173 TLSNCTYLRTLSLAYNDFSGAVPRE----IGN--LTKLKVLYIGANRLQGEI----PREFG-NLTELEQFSLPTNNLQV  240 (253)
Q Consensus       173 ~~~~l~~L~~L~L~~n~l~~~~p~~----l~~--l~~L~~L~l~~n~l~~~~----~~~~~-~l~~L~~L~l~~n~l~~  240 (253)
                      .+...++|++|++++|.+++.....    +..  .+.|++|++++|++++..    ...+. ..++|+.|++++|.+..
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            4556677777777777776432222    222  245777777777766422    22232 46677777777777753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.98  E-value=9.3e-11  Score=96.38  Aligned_cols=160  Identities=18%  Similarity=0.241  Sum_probs=99.5

Q ss_pred             CeEEEEEeCCCCcccc----CCccCCCCCCCCEEECCCCCCCCcCChh----h---------hccCCCCEEEccCCCCcC
Q 025426           81 HRVTVLNISSLNLRGT----IPSQLGNLSSLQSLNLSCNRLSGSIPST----I---------FTIYTLKNVSLGKNKLSG  143 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----l---------~~l~~L~~L~l~~n~l~~  143 (253)
                      ++++.|++++|.+.+.    +...+...++|+.|++++|.+.......    +         ...+.|+.+++++|.+..
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            5677777777776543    2223344567777777777664211111    1         234567777777777652


Q ss_pred             cCchh---HhcCCCCccEEEeecCcCCCC-----CCccCCCCCCcceEeeecCcCccc----CCccccCCCCCCeeeccc
Q 025426          144 QIPTN---ICSNLPFLEFLSLSLNMFHGG-----IPSTLSNCTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIGA  211 (253)
Q Consensus       144 ~~~~~---~~~~l~~L~~L~l~~n~~~~~-----~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~  211 (253)
                      .....   .+.....|++|++++|.++..     +...+...++|++|++++|.++..    +...+...++|++|++++
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~  252 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLND  252 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTT
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhc
Confidence            21111   124567788888888887632     223456677888888888887633    334556778888888888


Q ss_pred             CcCcccCC----hhhcC--CCCCCEEeccCCCCce
Q 025426          212 NRLQGEIP----REFGN--LTELEQFSLPTNNLQV  240 (253)
Q Consensus       212 n~l~~~~~----~~~~~--l~~L~~L~l~~n~l~~  240 (253)
                      |.+++...    ..+..  .+.|+.|++++|.++.
T Consensus       253 n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         253 CLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             CCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBH
T ss_pred             CccCchhhHHHHHHhhhccCCCCCEEECCCCcCCh
Confidence            88875432    23333  3568888888888764

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.1e-10  Score=98.65  Aligned_cols=168  Identities=20%  Similarity=0.137  Sum_probs=94.2

Q ss_pred             CeEEEEEeCCCCcccc----CCccCCCCCCCCEEECCCCCCCCcCChhh----h-ccCCCCEEEccCCCCcCcCchh---
Q 025426           81 HRVTVLNISSLNLRGT----IPSQLGNLSSLQSLNLSCNRLSGSIPSTI----F-TIYTLKNVSLGKNKLSGQIPTN---  148 (253)
Q Consensus        81 ~~l~~L~l~~~~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l----~-~l~~L~~L~l~~n~l~~~~~~~---  148 (253)
                      ..++.+++++|.+...    ....+...+.++.+++++|.+.......+    . ....|+.+++++|.+.......   
T Consensus       255 ~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~  334 (460)
T d1z7xw1         255 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSS  334 (460)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccc
Confidence            4566667766665422    12223345566777777776642222211    1 2346777777777766332221   


Q ss_pred             HhcCCCCccEEEeecCcCCCC----CCccC-CCCCCcceEeeecCcCccc----CCccccCCCCCCeeecccCcCcccCC
Q 025426          149 ICSNLPFLEFLSLSLNMFHGG----IPSTL-SNCTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIGANRLQGEIP  219 (253)
Q Consensus       149 ~~~~l~~L~~L~l~~n~~~~~----~~~~~-~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~~~~  219 (253)
                      .+....+|++|++++|.++..    ++..+ ...+.|++|++++|++++.    +.+.+...++|++|++++|++++...
T Consensus       335 ~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~  414 (460)
T d1z7xw1         335 VLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGI  414 (460)
T ss_dssp             HHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHH
T ss_pred             ccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCCHHHH
Confidence            123455677777777777532    22222 2345677778877777642    23345556777778887777765332


Q ss_pred             hh----hc-CCCCCCEEeccCCCCceecchhhhh
Q 025426          220 RE----FG-NLTELEQFSLPTNNLQVMILNFLQF  248 (253)
Q Consensus       220 ~~----~~-~l~~L~~L~l~~n~l~~~~p~~~~~  248 (253)
                      ..    +. +...|+.|++.+|.+.......+..
T Consensus       415 ~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l~~  448 (460)
T d1z7xw1         415 LQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQA  448 (460)
T ss_dssp             HHHHHHHTSTTCCCCEEECTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCccCEEECCCCCCCHHHHHHHHH
Confidence            22    22 2336777777777777665555543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=2.6e-10  Score=96.29  Aligned_cols=110  Identities=24%  Similarity=0.298  Sum_probs=70.5

Q ss_pred             CCCEEECCCCCCCCc-CChhhhccCCCCEEEccCCCCcCc----CchhHhcCCCCccEEEeecCcCCCC----CCccCC-
Q 025426          106 SLQSLNLSCNRLSGS-IPSTIFTIYTLKNVSLGKNKLSGQ----IPTNICSNLPFLEFLSLSLNMFHGG----IPSTLS-  175 (253)
Q Consensus       106 ~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~-  175 (253)
                      +|+.||+++|++++. +...+..++++++|++++|+++..    +...+ ..+++|++|++++|.++..    +...+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L-~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSAL-RVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHH-HTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHH-hcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            577888888888742 233455677888888888877621    22222 5677888888888877521    122222 


Q ss_pred             CCCCcceEeeecCcCccc----CCccccCCCCCCeeecccCcCcc
Q 025426          176 NCTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIGANRLQG  216 (253)
Q Consensus       176 ~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~  216 (253)
                      ...+|++|++++|.+++.    ++..+...++|++|++++|.+.+
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~  126 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGD  126 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchh
Confidence            224677888888877643    33455667777888887777764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=7.8e-10  Score=81.00  Aligned_cols=88  Identities=23%  Similarity=0.209  Sum_probs=52.5

Q ss_pred             HhcCCCCccEEEeecCcCCCCC--CccCCCCCCcceEeeecCcCcccCCccccCCCCCCeeecccCcCcccCC-------
Q 025426          149 ICSNLPFLEFLSLSLNMFHGGI--PSTLSNCTYLRTLSLAYNDFSGAVPREIGNLTKLKVLYIGANRLQGEIP-------  219 (253)
Q Consensus       149 ~~~~l~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~~-------  219 (253)
                      ++..+++|++|++++|.++...  +..+..+++|+.|++++|.++...+-......+|+.|++++|++.+...       
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            3345666777777777766432  2334566777777777777764333223334467777777777764433       


Q ss_pred             hhhcCCCCCCEEeccCCCC
Q 025426          220 REFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       220 ~~~~~l~~L~~L~l~~n~l  238 (253)
                      ..+..+|+|+.||  +..+
T Consensus       140 ~i~~~~P~L~~LD--g~~v  156 (162)
T d1koha1         140 AIRERFPKLLRLD--GHEL  156 (162)
T ss_dssp             HHHTTSTTCCEET--TEEC
T ss_pred             HHHHHCCCCCEEC--cCCC
Confidence            2256678888776  4444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=6e-08  Score=70.63  Aligned_cols=86  Identities=23%  Similarity=0.159  Sum_probs=56.9

Q ss_pred             ChhhhccCCCCEEEccCCCCcCcCch--hHhcCCCCccEEEeecCcCCCCCCccCCCCCCcceEeeecCcCcccCCc---
Q 025426          122 PSTIFTIYTLKNVSLGKNKLSGQIPT--NICSNLPFLEFLSLSLNMFHGGIPSTLSNCTYLRTLSLAYNDFSGAVPR---  196 (253)
Q Consensus       122 ~~~l~~l~~L~~L~l~~n~l~~~~~~--~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~---  196 (253)
                      +.....+++|++|++++|.++ .++.  ..+..+++|+.|++++|.++...+..+.....|+.+++.+|++......   
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~  136 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQST  136 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHH
T ss_pred             HHHHHhCCCCCEeeCCCcccc-CCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchh
Confidence            334456778888888888887 4432  3336678888888888888743332333445688888888888754432   


Q ss_pred             ----cccCCCCCCeee
Q 025426          197 ----EIGNLTKLKVLY  208 (253)
Q Consensus       197 ----~l~~l~~L~~L~  208 (253)
                          .+..+++|+.||
T Consensus       137 y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         137 YISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHTTSTTCCEET
T ss_pred             HHHHHHHHCCCCCEEC
Confidence                245678888876

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.05  E-value=1e-06  Score=64.19  Aligned_cols=62  Identities=11%  Similarity=0.081  Sum_probs=29.7

Q ss_pred             CCCcceEeeecCcCccc----CCccccCCCCCCeeecccCcCcc-------cCChhhcCCCCCCEEeccCCCC
Q 025426          177 CTYLRTLSLAYNDFSGA----VPREIGNLTKLKVLYIGANRLQG-------EIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       177 l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~l~~-------~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      .+.|++|++++|.+++.    +-..+...+.|++|++++|.+..       .+...+...+.|+.|+++.+..
T Consensus        71 n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~  143 (167)
T d1pgva_          71 SPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  143 (167)
T ss_dssp             CSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             cccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence            34444455554444421    11223334455555555554331       1234445566777777766543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.00  E-value=2.1e-06  Score=62.42  Aligned_cols=88  Identities=14%  Similarity=0.071  Sum_probs=42.8

Q ss_pred             hhccCCCCEEEccCCCCcCc----CchhHhcCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCcCccc---
Q 025426          125 IFTIYTLKNVSLGKNKLSGQ----IPTNICSNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYNDFSGA---  193 (253)
Q Consensus       125 l~~l~~L~~L~l~~n~l~~~----~~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~---  193 (253)
                      +...++|++|++++|.+...    +...+ ...+.|++|++++|.++..    +...+...++|++|++++|.+...   
T Consensus        40 L~~n~~L~~L~Ls~n~l~~~~~~~la~~L-~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~  118 (167)
T d1pgva_          40 ACNSKHIEKFSLANTAISDSEARGLIELI-ETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQ  118 (167)
T ss_dssp             HTTCSCCCEEECTTSCCBHHHHTTHHHHH-HHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHH
T ss_pred             HhhCCccceeeccccccchhHHHHHhhhh-hhcccccceeeehhhcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHH
Confidence            33445555666655555421    11111 3345566666666655432    123345556666666666654321   


Q ss_pred             ----CCccccCCCCCCeeecccCc
Q 025426          194 ----VPREIGNLTKLKVLYIGANR  213 (253)
Q Consensus       194 ----~p~~l~~l~~L~~L~l~~n~  213 (253)
                          +...+...+.|+.|+++.+.
T Consensus       119 ~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         119 VEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHHHHHhCCCccEeeCcCCC
Confidence                12223344666667665543

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.63  E-value=6.8e-06  Score=59.50  Aligned_cols=65  Identities=15%  Similarity=0.128  Sum_probs=30.7

Q ss_pred             CCCCCCEEECCC-CCCCCc----CChhhhccCCCCEEEccCCCCcCcCchh---HhcCCCCccEEEeecCcCC
Q 025426          103 NLSSLQSLNLSC-NRLSGS----IPSTIFTIYTLKNVSLGKNKLSGQIPTN---ICSNLPFLEFLSLSLNMFH  167 (253)
Q Consensus       103 ~l~~L~~L~l~~-n~l~~~----~~~~l~~l~~L~~L~l~~n~l~~~~~~~---~~~~l~~L~~L~l~~n~~~  167 (253)
                      +.+.|++|++++ +.++..    +..++...++|++|++++|.++......   .+....+++.+++++|.++
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            445666666665 334321    2233344556666666666654221111   1123445555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.52  E-value=1.3e-05  Score=57.87  Aligned_cols=113  Identities=18%  Similarity=0.147  Sum_probs=60.6

Q ss_pred             hccCCCCEEEccC-CCCcCcCchhH---hcCCCCccEEEeecCcCCCC----CCccCCCCCCcceEeeecCcCccc----
Q 025426          126 FTIYTLKNVSLGK-NKLSGQIPTNI---CSNLPFLEFLSLSLNMFHGG----IPSTLSNCTYLRTLSLAYNDFSGA----  193 (253)
Q Consensus       126 ~~l~~L~~L~l~~-n~l~~~~~~~~---~~~l~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----  193 (253)
                      ...++|++|++++ +.++...-..+   +...++|++|++++|.++..    +...+...+.++.+++.+|.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3446677777766 34542211111   13556677777777766532    122334456677777777666532    


Q ss_pred             CCccccCCCCCCeeec--ccCcCcc----cCChhhcCCCCCCEEeccCCCC
Q 025426          194 VPREIGNLTKLKVLYI--GANRLQG----EIPREFGNLTELEQFSLPTNNL  238 (253)
Q Consensus       194 ~p~~l~~l~~L~~L~l--~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l  238 (253)
                      +...+...++|+.++|  ++|.+.+    .+.+.+...++|+.|+++.+..
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            2233445566665444  3455543    2334455667777777766654