Citrus Sinensis ID: 025428

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250---
Protein Sequence
MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKR
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEccccHHHHHHHHHHHHHccccccccccccccccccccHHcccccccccEEEEcccccHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccccEEEEcccccccccccccEEEEcccccEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccEcccccccccccccccccccccHccccccccEEcccccEEcccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEcccHHHHHHHHHHHHHcccccccccHHHHHcccccccHHHccccccccEEEccccHHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHcccccEEEEEEEccccccccccEEEEEcccEEEEEEcccccccc
Coil and Loop (DISEMBL)
magfrlppeepevspqqppqqvrvagdlvsddersvaadSWSIkseygstldddqRHADAAEALSSAAnfransdynsdkeepdpegmasMLGLQSYWDSAYADELANFrehghagevwFGADVMDVVASWTKSLCISIsqghmlnhvedlksepveendkylsswsvldigtgNGLLLQELSKqgfsdltgvdyseDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKgtldaiglhpdgplkr
Flexible Loop (DISEMBL)
magfrlppeepevspqqppqQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADAAEALSsaanfransdynsDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKgtldaiglhpdgplkr
Low Complexity Region (SEG)
MAGFRLppeepevspqqppqqvrvAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHadaaealssaanfraNSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKR
Disordered region (IsUnstruct)
*******************************************************************************************LGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDL*******NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIG*********
Disordered Region (DISOPRED)
********************************ERSVAADSWSIKSEYGSTLD****************************************GLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHP******
Disordered Region (DISEMBL)
***********************VAGD***********DSWSIKSEYGSTLDDDQRHADAAEALSSAANFRANS*************MASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKR
Disordered Region (DISPRO)
***********************************VAADSWSIKSEYGSTLDDDQRHADAAEALSSAANFR***************G*ASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEE*DKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	253	2.2.26 [Sep-21-2011]
Q5JPI9	291	Methyltransferase-like pr	yes	no	0.596	0.518	0.398	4e-28
Q9D853	244	Methyltransferase-like pr	yes	no	0.565	0.586	0.393	8e-26
Q5D013	233	Methyltransferase-like pr	yes	no	0.529	0.575	0.368	6e-24
Q9P7Z3	238	N-lysine methyltransferas	yes	no	0.549	0.584	0.363	4e-16
P40516	257	N-lysine methyltransferas	yes	no	0.608	0.599	0.321	4e-13

>sp|Q5JPI9|MET10_HUMAN Methyltransferase-like protein 10 OS=Homo sapiens GN=METTL10 PE=1 SV=2

 Score =  124 bits (312), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 71/178 (39%), Positives = 101/178 (56%), Gaps = 27/178 (15%)

Query: 78  SDKEEPDPEGMA-SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLC 136
           SDK  P  +G   S LG + +WD+ Y  EL  FRE+G  GE+WFG + M+ +  W     
Sbjct: 17  SDKGSPGEDGFVPSALGTREHWDAVYERELQTFREYGDTGEIWFGEESMNRLIRWM---- 72

Query: 137 ISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYS 196
               Q H +         P++         SVLDIGTGNG+ L EL+K GFS++TG+DYS
Sbjct: 73  ----QKHKI---------PLDA--------SVLDIGTGNGVFLVELAKFGFSNITGIDYS 111

Query: 197 EDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGTLDAIGLHPDGPLKR 253
             AI L+ S+  ++G S IK  V+D L+   +   F + +DKGT DAI L+PD  +++
Sbjct: 112 PSAIQLSGSIIEKEGLSNIKLKVEDFLNLSTQLSGFHICIDKGTFDAISLNPDNAIEK 169

Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q9D853|MET10_MOUSE Methyltransferase-like protein 10 OS=Mus musculus GN=Mettl10 PE=2 SV=1

 Score =  117 bits (293), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 70/178 (39%), Positives = 99/178 (55%), Gaps = 35/178 (19%)

Query: 85  PEG-------MASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCI 137
           PEG       + S LG + +WD+ Y  EL  F+E+G  GE+WFG + M+ +  W      
Sbjct: 18  PEGSSAADDFVPSALGTREHWDAVYERELRTFQEYGDTGEIWFGEESMNRLIRWM----- 72

Query: 138 SISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE 197
              Q H +         P++         SVLDIGTGNG+ L EL K GFS++TG+DYS 
Sbjct: 73  ---QKHKI---------PLDA--------SVLDIGTGNGVFLVELVKHGFSNITGIDYSP 112

Query: 198 DAINLAQSLANRDGFSCIKFLVDDVLD--TKLERQFQLVMDKGTLDAIGLHPDGPLKR 253
            AI L+ S+  ++G S I   V+D L+  TKL   F + +DKGT DAI L+PD  +++
Sbjct: 113 SAIKLSASILEKEGLSNINLKVEDFLNPSTKLS-GFHVCVDKGTYDAISLNPDNAIEK 169

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5D013|MET10_DANRE Methyltransferase-like protein 10 OS=Danio rerio GN=mettl10 PE=2 SV=1

 Score =  111 bits (277), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 59/160 (36%), Positives = 89/160 (55%), Gaps = 26/160 (16%)

Query: 90  SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE 149
           S LG + YWD AY  EL  +++ G  GE+WFG + M  V  W                  
Sbjct: 26  SKLGTKEYWDGAYKRELQTYKDIGDVGEIWFGEESMHRVIRW------------------ 67

Query: 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR 209
            ++++ + EN       ++LDIGTGNG+ L EL++ GFS+LTG+DYS+ A+ L  ++   
Sbjct: 68  -MEAQNISENA------AILDIGTGNGMFLVELARHGFSNLTGIDYSKAALELTTNILVE 120

Query: 210 DGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAIGLHPD 248
           +G   I   V+D L+   E + F + +DKGT DAI L+P+
Sbjct: 121 EGLKNINIQVEDFLNPSTELKGFDVCIDKGTFDAISLNPE 160

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q9P7Z3|SEE1_SCHPO N-lysine methyltransferase see1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=see1 PE=2 SV=1

 Score = 85.1 bits (209), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 86/165 (52%), Gaps = 26/165 (15%)

Query: 90  SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE 149
           S LG + YWD+ Y  E++NF E    GEVWFG +  + +  W +            +H+ 
Sbjct: 7   SKLGTKQYWDNVYEREVSNFTEFNDEGEVWFGEEAEERIVQWLE------------DHIS 54

Query: 150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ------GFSDLTGVDYSEDAINLA 203
               E  E      + + VLD+GTGNG LL  L ++          L GVDYSE AI LA
Sbjct: 55  TSFREVSEA-----APFRVLDLGTGNGHLLFRLLEEEDTLLPSPCQLVGVDYSEAAIVLA 109

Query: 204 QSLANRDGFS-CIKFLVDDVL-DTKL-ERQFQLVMDKGTLDAIGL 245
           +++A    FS  +KF   D++ D+K   + + L++DKGT DAI L
Sbjct: 110 KNIARHRQFSDKVKFQQLDIIKDSKFCSKDWDLILDKGTFDAISL 154

Lysine methyltransferase.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P40516|SEE1_YEAST N-lysine methyltransferase SEE1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEE1 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 94/193 (48%), Gaps = 39/193 (20%)

Query: 77  NSDKEEPDPEGMASM----------LGLQSYWDSAYADELANFREHGH-AGEVWFGADVM 125
           N   E   PE +  M          LG + YWD  YA EL NFR +    G+ WF     
Sbjct: 15  NGIMERTQPEKVVQMQGTADLSTSKLGTKKYWDELYALELENFRRNPQDTGDCWFSD--- 71

Query: 126 DVVASWTKSLCISISQGHMLNH-VEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSK 184
                       S ++  M++  V+++ +  + EN       SV+D+GTGNG +L EL +
Sbjct: 72  ------------SDAEQKMIDFLVDNIGAYRISENA------SVVDLGTGNGHMLFELHQ 113

Query: 185 QGF-SDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE-RQFQLVMDKGTLD 241
             F   L G+DYSE+++ LA ++A   G  + I F   D+     +  ++ +V+DKGTLD
Sbjct: 114 TEFQGKLVGIDYSEESVKLASNIAEATGVDNFISFQQADIFSGDWKPGKYDIVLDKGTLD 173

Query: 242 AI---GLHPDGPL 251
           AI   G+  +G L
Sbjct: 174 AISLSGMKINGKL 186

Lysine methyltransferase. Dimethylates TEF1/eEF1A at 'Lys-316'. May play a role in intracellular transport.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
255574272	336	conserved hypothetical protein [Ricinus	0.972	0.732	0.778	1e-108
225453070	340	PREDICTED: methyltransferase-like protei	0.980	0.729	0.754	1e-107
356569031	342	PREDICTED: methyltransferase-like protei	0.992	0.733	0.770	1e-106
356499626	342	PREDICTED: methyltransferase-like protei	0.992	0.733	0.766	1e-106
357508247	340	Methyltransferase-like protein [Medicago	0.976	0.726	0.760	1e-105
224124078	342	predicted protein [Populus trichocarpa]	0.980	0.725	0.789	1e-103
4760710	337	SLL2-S9-protein [Brassica rapa]	0.972	0.729	0.732	1e-100
1518113	337	SLL2 [Brassica napus]	0.972	0.729	0.724	2e-99
449445949	344	PREDICTED: methyltransferase-like protei	0.976	0.718	0.720	6e-98
15219724	358	putative S locus-linked protein [Arabido	0.996	0.703	0.698	4e-97

>gi|255574272|ref|XP_002528050.1| conserved hypothetical protein [Ricinus communis] gi|223532511|gb|EEF34300.1| conserved hypothetical protein [Ricinus communis]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 197/253 (77%), Positives = 217/253 (85%), Gaps = 7/253 (2%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           MAG RL PEE ++S QQ        GDLVSDDERSVAADSWSIKS+YGSTLDDDQRHADA
Sbjct: 1   MAGIRLLPEEADLSQQQSRGGA-AGGDLVSDDERSVAADSWSIKSDYGSTLDDDQRHADA 59

Query: 61  AEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120
           AEALSSA NFR  SDYNSDKEEPD EG+ SMLGLQSYWDSAYADELANF EHGHAGE+WF
Sbjct: 60  AEALSSATNFRTASDYNSDKEEPDGEGVTSMLGLQSYWDSAYADELANFHEHGHAGEIWF 119

Query: 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQ 180
           G+DVMDVV SWTKSLCI ISQ H+ NHV+      +E++DK L  WSVLD+GTGNGLLLQ
Sbjct: 120 GSDVMDVVVSWTKSLCIRISQDHISNHVD------IEQDDKCLPYWSVLDLGTGNGLLLQ 173

Query: 181 ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240
           EL+KQGFSDLTG DYSE AI+LA+ LA+RDGFS I FLVDD+L+TKLERQF+LVMDKGTL
Sbjct: 174 ELAKQGFSDLTGADYSEGAIDLARKLADRDGFSNINFLVDDILETKLERQFKLVMDKGTL 233

Query: 241 DAIGLHPDGPLKR 253
           DAIGLHPDGP+KR
Sbjct: 234 DAIGLHPDGPIKR 246

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453070|ref|XP_002269621.1| PREDICTED: methyltransferase-like protein 10 isoform 1 [Vitis vinifera] gi|296087211|emb|CBI33585.3| unnamed protein product [Vitis vinifera]

 Score =  392 bits (1006), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 191/253 (75%), Positives = 221/253 (87%), Gaps = 5/253 (1%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           MAG RLPPE+ ++   + P       DLVSDD+RSVAADSWSIKS+YGSTLDDDQRHADA
Sbjct: 1   MAGIRLPPEDSDIPQARAP----TYADLVSDDDRSVAADSWSIKSDYGSTLDDDQRHADA 56

Query: 61  AEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120
           ++AL+S  NFRA SDY+SDK+E D E + SMLGLQSYWD+AYADEL NFREHGH GEVWF
Sbjct: 57  SDALASG-NFRAASDYSSDKDELDSEVVTSMLGLQSYWDAAYADELTNFREHGHTGEVWF 115

Query: 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQ 180
           G +VM++V SWTK+LCI ISQGHM NH++D KSEPVE+ +KYLSSWSVLDIGTGNGLLLQ
Sbjct: 116 GVEVMEIVVSWTKNLCIEISQGHMPNHLDDAKSEPVEQGEKYLSSWSVLDIGTGNGLLLQ 175

Query: 181 ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240
           EL+KQGFSDLTG DYSE AI+LA+SLA+RDGF+ I FLVDDVL++KLERQFQLV+DKGTL
Sbjct: 176 ELAKQGFSDLTGTDYSEGAIDLARSLADRDGFTYINFLVDDVLESKLERQFQLVIDKGTL 235

Query: 241 DAIGLHPDGPLKR 253
           DAIGLHPDGP+KR
Sbjct: 236 DAIGLHPDGPIKR 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569031|ref|XP_003552710.1| PREDICTED: methyltransferase-like protein 10-like [Glycine max]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/253 (77%), Positives = 219/253 (86%), Gaps = 2/253 (0%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           MAG RL PE+ +VS QQ       A DLVSDD+RSVAADSWSIKSEYGSTLDDDQRHADA
Sbjct: 1   MAGIRLLPEDSDVS-QQSRAVPLSAADLVSDDDRSVAADSWSIKSEYGSTLDDDQRHADA 59

Query: 61  AEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120
           AEALS+A N R  SDY+SDK+EPD E + SMLG QSYWD+AYADEL NFREHGHAGEVWF
Sbjct: 60  AEALSNA-NLRPPSDYSSDKDEPDSEAVTSMLGFQSYWDAAYADELTNFREHGHAGEVWF 118

Query: 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQ 180
           G DVM+VVASWTK+LC+ ISQG + N V+++K+E  E  DK LS+WSVLDIGTGNGLLLQ
Sbjct: 119 GVDVMEVVASWTKTLCVEISQGRIPNDVDEVKTEVDELGDKVLSTWSVLDIGTGNGLLLQ 178

Query: 181 ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240
           EL+KQGFSDLTG DYSE AINLAQSLANRDGFS +KFLVDDVL+TKLE++F+LVMDKGTL
Sbjct: 179 ELAKQGFSDLTGTDYSERAINLAQSLANRDGFSNVKFLVDDVLETKLEQEFRLVMDKGTL 238

Query: 241 DAIGLHPDGPLKR 253
           DAIGLHPDGP+KR
Sbjct: 239 DAIGLHPDGPVKR 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499626|ref|XP_003518638.1| PREDICTED: methyltransferase-like protein 10-like [Glycine max]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 194/253 (76%), Positives = 219/253 (86%), Gaps = 2/253 (0%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGDLVSDDERSVAADSWSIKSEYGSTLDDDQRHADA 60
           MAG RL PE+ +VS QQ       A DLVSDD+RSVAADSWSIKSEYGSTLDDDQRHADA
Sbjct: 1   MAGIRLQPEDSDVS-QQSRAVALSATDLVSDDDRSVAADSWSIKSEYGSTLDDDQRHADA 59

Query: 61  AEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWF 120
           AEALS+A N R  SDY+SDK+EPD E + SMLG QSYWDSAYADEL NFREHGH GEVWF
Sbjct: 60  AEALSNA-NLRPPSDYSSDKDEPDSEAVTSMLGFQSYWDSAYADELTNFREHGHTGEVWF 118

Query: 121 GADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQ 180
           G DVM+VVASWTK+LC+ ISQGH+ N V+++K+E  +  DK LS+WSVLDIGTGNGLLLQ
Sbjct: 119 GVDVMEVVASWTKALCVEISQGHIPNGVDEVKAEADKLGDKVLSTWSVLDIGTGNGLLLQ 178

Query: 181 ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL 240
           EL+KQGFSDLTG DYSE AI+LAQSLANRDGFS +KFLVDDVL+TKLE++F+LVMDKGTL
Sbjct: 179 ELAKQGFSDLTGTDYSERAISLAQSLANRDGFSNVKFLVDDVLETKLEQEFRLVMDKGTL 238

Query: 241 DAIGLHPDGPLKR 253
           DAIGLHPDGP+KR
Sbjct: 239 DAIGLHPDGPVKR 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357508247|ref|XP_003624412.1| Methyltransferase-like protein [Medicago truncatula] gi|355499427|gb|AES80630.1| Methyltransferase-like protein [Medicago truncatula]

 Score =  385 bits (990), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 194/255 (76%), Positives = 218/255 (85%), Gaps = 8/255 (3%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAG--DLVSDDERSVAADSWSIKSEYGSTLDDDQRHA 58
           MAG RL PE+ +VS     QQ R     DLVSDD+RS+AADSWSIKSEYGSTLDDDQRHA
Sbjct: 1   MAGIRLQPEDSDVS-----QQARAVALVDLVSDDDRSIAADSWSIKSEYGSTLDDDQRHA 55

Query: 59  DAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEV 118
           DAAEALS+  N RA SDY+SDK+EPD E ++SMLG QSYWD+AY DEL NF EHGHAGEV
Sbjct: 56  DAAEALSNV-NLRAASDYSSDKDEPDAEAVSSMLGFQSYWDAAYTDELTNFHEHGHAGEV 114

Query: 119 WFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLL 178
           WFG +VM+VVASWTK+LCI ISQG + NHV+D+K++  E +DK LSSW+VLDIGTGNGLL
Sbjct: 115 WFGDNVMEVVASWTKTLCIDISQGRLPNHVDDVKADAGELDDKLLSSWNVLDIGTGNGLL 174

Query: 179 LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG 238
           LQEL+KQGFSDLTG DYSE AINLAQSLANRDGF  IKFLVDDVL+TKLE+ FQLVMDKG
Sbjct: 175 LQELAKQGFSDLTGTDYSERAINLAQSLANRDGFPNIKFLVDDVLETKLEQVFQLVMDKG 234

Query: 239 TLDAIGLHPDGPLKR 253
           TLDAIGLHPDGP+KR
Sbjct: 235 TLDAIGLHPDGPVKR 249

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124078|ref|XP_002330099.1| predicted protein [Populus trichocarpa] gi|222871233|gb|EEF08364.1| predicted protein [Populus trichocarpa]

 Score =  380 bits (975), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 202/256 (78%), Positives = 219/256 (85%), Gaps = 8/256 (3%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAG---DLVSDDERSVAADSWSIKSEYGSTLDDDQRH 57
           M G RL  EE          Q+R AG   DLVSDD+RSVAADSWSIKS+YGSTLDDDQRH
Sbjct: 1   MTGIRLQQEES-----ADLTQIRAAGTGGDLVSDDDRSVAADSWSIKSDYGSTLDDDQRH 55

Query: 58  ADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGE 117
           ADAAEALS+AAN RA SDY+SDKEE D EG+ASMLGLQSYWD+AYADELANF EHGHAGE
Sbjct: 56  ADAAEALSAAANCRAASDYSSDKEELDAEGVASMLGLQSYWDAAYADELANFHEHGHAGE 115

Query: 118 VWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGL 177
           VWFGADVMDV+ASWTK LC  ISQG + NHV+D+KSE VEE+DKYLSSWSVLDIGTGNGL
Sbjct: 116 VWFGADVMDVIASWTKGLCFEISQGCIPNHVDDIKSETVEESDKYLSSWSVLDIGTGNGL 175

Query: 178 LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK 237
           LL EL+KQGFSDLTGVDYSE AINLA+ LA+RDGFS I  LVDDVL+TKL RQFQLVMDK
Sbjct: 176 LLHELAKQGFSDLTGVDYSEGAINLARRLADRDGFSNINLLVDDVLETKLNRQFQLVMDK 235

Query: 238 GTLDAIGLHPDGPLKR 253
           GTLDAIGLHPDG +KR
Sbjct: 236 GTLDAIGLHPDGAIKR 251

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4760710|dbj|BAA77395.1| SLL2-S9-protein [Brassica rapa]

 Score =  371 bits (952), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 186/254 (73%), Positives = 211/254 (83%), Gaps = 8/254 (3%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGD-LVSDDERSVAADSWSIKSEYGSTLDDDQRHAD 59
           MAG RL PEEPE +PQQ   Q R   D L SDD+RS+AADSWSIKSEYGSTLDDDQRHAD
Sbjct: 1   MAGIRLAPEEPETTPQQ---QARATTDSLASDDDRSIAADSWSIKSEYGSTLDDDQRHAD 57

Query: 60  AAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVW 119
           AAEALSSA NFR +SDY+SDKEEPD EG  SMLGLQSYWD+AY+DEL+NFREHGH GEVW
Sbjct: 58  AAEALSSA-NFRVSSDYSSDKEEPDAEGGQSMLGLQSYWDAAYSDELSNFREHGHTGEVW 116

Query: 120 FGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLL 179
           FG DVM++V SWTK LC+ ISQ      V D   E  ++ DKYLSSW+VLD+GTGNGLLL
Sbjct: 117 FGDDVMEIVTSWTKDLCVEISQKE--TSVSD-NGEVNDQADKYLSSWNVLDLGTGNGLLL 173

Query: 180 QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 239
            +L+K+GFSDLTG DYSE A+ LAQ L+ RDGF  I+F+VDD+LDTKLERQF+LVMDKGT
Sbjct: 174 HQLAKEGFSDLTGTDYSEGAVELAQHLSQRDGFPNIRFMVDDILDTKLERQFKLVMDKGT 233

Query: 240 LDAIGLHPDGPLKR 253
           LDAIGLHPDGP+KR
Sbjct: 234 LDAIGLHPDGPVKR 247

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1518113|gb|AAB49423.1| SLL2 [Brassica napus]

 Score =  367 bits (942), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 184/254 (72%), Positives = 210/254 (82%), Gaps = 8/254 (3%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAGD-LVSDDERSVAADSWSIKSEYGSTLDDDQRHAD 59
           MAG RL PEEPE +PQQ     R   D L SDD+RS+AADSWSIKSEYGSTLDDDQRHAD
Sbjct: 1   MAGIRLAPEEPETTPQQ---HARATTDSLASDDDRSIAADSWSIKSEYGSTLDDDQRHAD 57

Query: 60  AAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVW 119
           AAEALSSA NFR +SDY+SDKEEPD +G  SMLGLQSYWD+AY+DEL+NFREHGH GEVW
Sbjct: 58  AAEALSSA-NFRVSSDYSSDKEEPDADGGQSMLGLQSYWDAAYSDELSNFREHGHTGEVW 116

Query: 120 FGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLL 179
           FG DVM++V SWTK LC+ ISQ  M   V D   E  ++ DKYLSSW+VLD+GTGN LLL
Sbjct: 117 FGDDVMEIVTSWTKDLCVEISQKEM--SVSD-NGEVNDQADKYLSSWNVLDLGTGNCLLL 173

Query: 180 QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT 239
            +L+K+GFSDLTG DYSE A+ LAQ L+ RDGF  I+F+VDD+LDTKLERQF+LVMDKGT
Sbjct: 174 HQLAKEGFSDLTGTDYSEGAVELAQHLSQRDGFPNIRFMVDDILDTKLERQFKLVMDKGT 233

Query: 240 LDAIGLHPDGPLKR 253
           LDAIGLHPDGP+KR
Sbjct: 234 LDAIGLHPDGPVKR 247

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445949|ref|XP_004140734.1| PREDICTED: methyltransferase-like protein 10-like [Cucumis sativus] gi|449485456|ref|XP_004157174.1| PREDICTED: methyltransferase-like protein 10-like [Cucumis sativus]

 Score =  362 bits (930), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 186/258 (72%), Positives = 211/258 (81%), Gaps = 11/258 (4%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAG---DLVSDDERSVAADSWSIKSEYGSTLDDDQRH 57
           MA  RL PE+ E+      QQ R A    DLVSDD+RSVAADSWSIKSEYGSTLDDDQR+
Sbjct: 1   MAAVRLTPEDAEL-----LQQARAAPSAVDLVSDDDRSVAADSWSIKSEYGSTLDDDQRN 55

Query: 58  ADAAEALSSAANFRANSDYNSDKEE--PDPEGMASMLGLQSYWDSAYADELANFREHGHA 115
           ADAAEALS A N R  SDY+SDK+E  PD E + SMLGLQSYWDS YADEL NFREHGH 
Sbjct: 56  ADAAEALS-AGNLRPASDYSSDKDEMEPDAEAVTSMLGLQSYWDSQYADELTNFREHGHV 114

Query: 116 GEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGN 175
           GEVWFG++VM+ VASWTKSLC  +SQG  LN   ++K+  V++  K+LSSWSVLDIGTGN
Sbjct: 115 GEVWFGSEVMETVASWTKSLCYDVSQGRFLNQAGNVKTLNVDQGSKFLSSWSVLDIGTGN 174

Query: 176 GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM 235
           GLLLQEL+K+GFS+LTG DYSE AI+LA+SLA RDGFS I FLVDDVL+TKLE QFQLV+
Sbjct: 175 GLLLQELAKEGFSNLTGTDYSEGAIDLARSLAERDGFSNINFLVDDVLETKLEGQFQLVV 234

Query: 236 DKGTLDAIGLHPDGPLKR 253
           DKGTLDAIGLHPDGP+KR
Sbjct: 235 DKGTLDAIGLHPDGPIKR 252

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219724|ref|NP_176841.1| putative S locus-linked protein [Arabidopsis thaliana] gi|12597759|gb|AAG60072.1|AC013288_6 pheromone receptor, putative (AR401) [Arabidopsis thaliana] gi|332196423|gb|AEE34544.1| putative S locus-linked protein [Arabidopsis thaliana]

 Score =  360 bits (923), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 181/259 (69%), Positives = 212/259 (81%), Gaps = 7/259 (2%)

Query: 1   MAGFRLPPEEPEVSPQQPPQQVRVAG-----DLVSDDERSVAADSWSIKSEYGSTLDDDQ 55
           MAG RL PEEPE +PQQ  +            L SDD+RS+AADSWSIKSEYGSTLDDDQ
Sbjct: 1   MAGIRLLPEEPETTPQQQARAAAAVTTTTTDSLASDDDRSIAADSWSIKSEYGSTLDDDQ 60

Query: 56  RHADAAEALSSAANFRANSDYNSDKEEPDPEGMA-SMLGLQSYWDSAYADELANFREHGH 114
           RHADAAEALSSA NFR +SDY+SDKEEPD +G   SMLGLQSYWD+AY+DEL NFREHGH
Sbjct: 61  RHADAAEALSSA-NFRVSSDYSSDKEEPDADGGGQSMLGLQSYWDAAYSDELTNFREHGH 119

Query: 115 AGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTG 174
           AGEVWFG DVM++V SWTK LC+ ISQ +M     D+ +E  ++ DKYLSSW+VLD+GTG
Sbjct: 120 AGEVWFGDDVMEIVTSWTKDLCVEISQRNMSVSENDVTTEVNDQADKYLSSWNVLDLGTG 179

Query: 175 NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLV 234
           NGLLL +L+K+GFSDLTG DYS+ A+ LAQ L+ RDGF  I+F+VDD+LDTKLE+QF+LV
Sbjct: 180 NGLLLHQLAKEGFSDLTGTDYSDGAVELAQHLSQRDGFPNIRFMVDDILDTKLEQQFKLV 239

Query: 235 MDKGTLDAIGLHPDGPLKR 253
           MDKGTLDAIGLHPDGP+KR
Sbjct: 240 MDKGTLDAIGLHPDGPVKR 258

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	253
TAIR|locus:2033329	358	AR401 [Arabidopsis thaliana (t	0.889	0.628	0.682	1.3e-82
UNIPROTKB|Q5JPI9	291	METTL10 "Methyltransferase-lik	0.343	0.298	0.5	9.9e-31
MGI|MGI:1919346	244	Mettl10 "methyltransferase lik	0.339	0.352	0.516	3.2e-28
ZFIN|ZDB-GENE-050306-30	233	mettl10 "methyltransferase lik	0.324	0.351	0.457	2.5e-26
SGD|S000001326	257	SEE1 "Probable lysine methyltr	0.308	0.303	0.445	1.2e-15
WB|WBGene00017919	236	F29B9.1 [Caenorhabditis elegan	0.173	0.186	0.5	7.3e-15
POMBASE|SPBC839.14c	238	SPBC839.14c "methyltransferase	0.557	0.592	0.368	1.8e-14
TAIR|locus:2116174	248	AT4G34360 "AT4G34360" [Arabido	0.339	0.346	0.367	1.9e-07
UNIPROTKB|Q81QE3	236	BAS2308 "Uncharacterized prote	0.332	0.355	0.348	4.2e-05
TIGR_CMR|BA_2483	236	BA_2483 "conserved hypothetica	0.332	0.355	0.348	4.2e-05

TAIR|locus:2033329 AR401 [Arabidopsis thaliana (taxid:3702)]

 Score = 828 (296.5 bits), Expect = 1.3e-82, P = 1.3e-82
 Identities = 155/227 (68%), Positives = 184/227 (81%)

Query:    28 LVSDDERSVAADSWSIKSEYGSTLDDDQRHXXXXXXXXXXXXXXXNSDYNSDKEEPDPEG 87
             L SDD+RS+AADSWSIKSEYGSTLDDDQRH               +SDY+SDKEEPD +G
Sbjct:    33 LASDDDRSIAADSWSIKSEYGSTLDDDQRHADAAEALSSANFRV-SSDYSSDKEEPDADG 91

Query:    88 MA-SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLN 146
                SMLGLQSYWD+AY+DEL NFREHGHAGEVWFG DVM++V SWTK LC+ ISQ +M  
Sbjct:    92 GGQSMLGLQSYWDAAYSDELTNFREHGHAGEVWFGDDVMEIVTSWTKDLCVEISQRNMSV 151

Query:   147 HVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSL 206
                D+ +E  ++ DKYLSSW+VLD+GTGNGLLL +L+K+GFSDLTG DYS+ A+ LAQ L
Sbjct:   152 SENDVTTEVNDQADKYLSSWNVLDLGTGNGLLLHQLAKEGFSDLTGTDYSDGAVELAQHL 211

Query:   207 ANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAIGLHPDGPLKR 253
             + RDGF  I+F+VDD+LDTKLE+QF+LVMDKGTLDAIGLHPDGP+KR
Sbjct:   212 SQRDGFPNIRFMVDDILDTKLEQQFKLVMDKGTLDAIGLHPDGPVKR 258

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|Q5JPI9 METTL10 "Methyltransferase-like protein 10" [Homo sapiens (taxid:9606)]

 Score = 220 (82.5 bits), Expect = 9.9e-31, Sum P(2) = 9.9e-31
 Identities = 44/88 (50%), Positives = 62/88 (70%)

Query:   167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
             SVLDIGTGNG+ L EL+K GFS++TG+DYS  AI L+ S+  ++G S IK  V+D L+  
Sbjct:    82 SVLDIGTGNGVFLVELAKFGFSNITGIDYSPSAIQLSGSIIEKEGLSNIKLKVEDFLNLS 141

Query:   227 LERQ-FQLVMDKGTLDAIGLHPDGPLKR 253
              +   F + +DKGT DAI L+PD  +++
Sbjct:   142 TQLSGFHICIDKGTFDAISLNPDNAIEK 169

GO:0008168 "methyltransferase activity" evidence=IEA

MGI|MGI:1919346 Mettl10 "methyltransferase like 10" [Mus musculus (taxid:10090)]

 Score = 217 (81.4 bits), Expect = 3.2e-28, Sum P(2) = 3.2e-28
 Identities = 46/89 (51%), Positives = 62/89 (69%)

Query:   167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-- 224
             SVLDIGTGNG+ L EL K GFS++TG+DYS  AI L+ S+  ++G S I   V+D L+  
Sbjct:    82 SVLDIGTGNGVFLVELVKHGFSNITGIDYSPSAIKLSASILEKEGLSNINLKVEDFLNPS 141

Query:   225 TKLERQFQLVMDKGTLDAIGLHPDGPLKR 253
             TKL   F + +DKGT DAI L+PD  +++
Sbjct:   142 TKLSG-FHVCVDKGTYDAISLNPDNAIEK 169

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

ZFIN|ZDB-GENE-050306-30 mettl10 "methyltransferase like 10" [Danio rerio (taxid:7955)]

 Score = 196 (74.1 bits), Expect = 2.5e-26, Sum P(2) = 2.5e-26
 Identities = 38/83 (45%), Positives = 57/83 (68%)

Query:   167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
             ++LDIGTGNG+ L EL++ GFS+LTG+DYS+ A+ L  ++   +G   I   V+D L+  
Sbjct:    78 AILDIGTGNGMFLVELARHGFSNLTGIDYSKAALELTTNILVEEGLKNINIQVEDFLNPS 137

Query:   227 LE-RQFQLVMDKGTLDAIGLHPD 248
              E + F + +DKGT DAI L+P+
Sbjct:   138 TELKGFDVCIDKGTFDAISLNPE 160

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

SGD|S000001326 SEE1 "Probable lysine methyltransferase involved in dimethylation of eEF1A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 152 (58.6 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
 Identities = 37/83 (44%), Positives = 53/83 (63%)

Query:   167 SVLDIGTGNGLLLQELSKQGFSD-LTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVL- 223
             SV+D+GTGNG +L EL +  F   L G+DYSE+++ LA ++A   G  + I F   D+  
Sbjct:    96 SVVDLGTGNGHMLFELHQTEFQGKLVGIDYSEESVKLASNIAEATGVDNFISFQQADIFS 155

Query:   224 -DTKLERQFQLVMDKGTLDAIGL 245
              D K   ++ +V+DKGTLDAI L
Sbjct:   156 GDWK-PGKYDIVLDKGTLDAISL 177

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IMP

GO:0018027 "peptidyl-lysine dimethylation" evidence=IMP

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IMP

GO:0008168 "methyltransferase activity" evidence=IEA

WB|WBGene00017919 F29B9.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 121 (47.7 bits), Expect = 7.3e-15, Sum P(2) = 7.3e-15
 Identities = 22/44 (50%), Positives = 27/44 (61%)

Query:    78 SDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFG 121
             SD  E   E  +S LG + +WD  Y  EL NF++HG  GEVWFG
Sbjct:     2 SDMSEQSVEIASSQLGTKDFWDQRYELELKNFKQHGDEGEVWFG 45

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

POMBASE|SPBC839.14c SPBC839.14c "methyltransferase involved in endocytosis (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 60/163 (36%), Positives = 83/163 (50%)

Query:    90 SMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVE 149
             S LG + YWD+ Y  E++NF E    GEVWFG +  + +  W +   IS S       V 
Sbjct:     7 SKLGTKQYWDNVYEREVSNFTEFNDEGEVWFGEEAEERIVQWLEDH-ISTS----FREVS 61

Query:   150 DLKSEPVEENDKYLSSWSVLDIGTGNGL--LLQELSKQGFS--DLTGVDYSEDAINLAQS 205
             +  + P    D        L  G G+ L  LL+E      S   L GVDYSE AI LA++
Sbjct:    62 E--AAPFRVLD--------LGTGNGHLLFRLLEEEDTLLPSPCQLVGVDYSEAAIVLAKN 111

Query:   206 LANRDGFSC-IKFLVDDVL-DTKL-ERQFQLVMDKGTLDAIGL 245
             +A    FS  +KF   D++ D+K   + + L++DKGT DAI L
Sbjct:   112 IARHRQFSDKVKFQQLDIIKDSKFCSKDWDLILDKGTFDAISL 154

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006897 "endocytosis" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISO

TAIR|locus:2116174 AT4G34360 "AT4G34360" [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.9e-07, P = 1.9e-07
 Identities = 32/87 (36%), Positives = 49/87 (56%)

Query:   165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224
             S SVL++G GN  L +EL K G  D+T +D S  A+   QS     G+  IK +  D+LD
Sbjct:    51 SSSVLELGCGNSQLCEELYKDGIVDITCIDLSSVAVEKMQSRLLPKGYKEIKVVQADMLD 110

Query:   225 TKLERQ-FQLVMDKGTLDAIGLHPDGP 250
                + + F +V++KGT+D + +    P
Sbjct:   111 LPFDSESFDVVIEKGTMDVLFVDAGDP 137

GO:0003824 "catalytic activity" evidence=ISS

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q81QE3 BAS2308 "Uncharacterized protein" [Bacillus anthracis (taxid:1392)]

 Score = 117 (46.2 bits), Expect = 4.2e-05, P = 4.2e-05
 Identities = 30/86 (34%), Positives = 46/86 (53%)

Query:   161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD 220
             K +S   VL++G G G     L+ +GF D+T VD S + IN A+  A   G   I+F+ D
Sbjct:    56 KRVSKGKVLELGCGPGRNAIYLANEGF-DVTAVDLSIEGINWAKERALAKGVE-IEFICD 113

Query:   221 DVLDTKLERQFQLVMDKGTLDAIGLH 246
              + + +++ +F  V D G L  I  H
Sbjct:   114 SIFNLEVQNEFDFVYDSGCLHHIPPH 139

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_2483 BA_2483 "conserved hypothetical protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 117 (46.2 bits), Expect = 4.2e-05, P = 4.2e-05
 Identities = 30/86 (34%), Positives = 46/86 (53%)

Query:   161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD 220
             K +S   VL++G G G     L+ +GF D+T VD S + IN A+  A   G   I+F+ D
Sbjct:    56 KRVSKGKVLELGCGPGRNAIYLANEGF-DVTAVDLSIEGINWAKERALAKGVE-IEFICD 113

Query:   221 DVLDTKLERQFQLVMDKGTLDAIGLH 246
              + + +++ +F  V D G L  I  H
Sbjct:   114 SIFNLEVQNEFDFVYDSGCLHHIPPH 139

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	0.691

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	253
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	3e-12
pfam13649	97	pfam13649, Methyltransf_25, Methyltransferase doma	3e-10
cd02440	107	cd02440, AdoMet_MTases, S-adenosylmethionine-depen	3e-09
pfam12847	104	pfam12847, Methyltransf_18, Methyltransferase doma	6e-09
TIGR01983	224	TIGR01983, UbiG, ubiquinone biosynthesis O-methylt	2e-08
pfam08241	92	pfam08241, Methyltransf_11, Methyltransferase doma	3e-06
pfam05175	170	pfam05175, MTS, Methyltransferase small domain	2e-05
pfam08242	98	pfam08242, Methyltransf_12, Methyltransferase doma	2e-05
COG4123	248	COG4123, COG4123, Predicted O-methyltransferase [G	3e-05
TIGR03534	251	TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) met	5e-05
COG2227	243	COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m	7e-05
PRK05134	233	PRK05134, PRK05134, bifunctional 3-demethylubiquin	2e-04
PRK09328	275	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-meth	7e-04
pfam13489	154	pfam13489, Methyltransf_23, Methyltransferase doma	8e-04
COG2890	280	COG2890, HemK, Methylase of polypeptide chain rele	9e-04
pfam13659	117	pfam13659, Methyltransf_26, Methyltransferase doma	0.001
COG0500	257	COG0500, SmtA, SAM-dependent methyltransferases [S	0.001
TIGR02021	219	TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m	0.002
PRK14968	188	PRK14968, PRK14968, putative methyltransferase; Pr	0.002
TIGR04290	226	TIGR04290, meth_Rta_06860, methyltransferase, Rta_	0.002

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 62.1 bits (151), Expect = 3e-12
 Identities = 24/88 (27%), Positives = 46/88 (52%), Gaps = 6/88 (6%)

Query: 167 SVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224
            VLD+G G G L   L+++    +++ G+D SE+AI  A+  A + G+  ++F+  D+ +
Sbjct: 6   KVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEE 65

Query: 225 ---TKLERQ-FQLVMDKGTLDAIGLHPD 248
               +LE   F +V+    L+ +     
Sbjct: 66  LPQLQLEDNSFDVVISNEVLNHLPDPDK 93

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 26/69 (37%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K 226
           +LD+G G G +L+ L++ G S +TGVD S++A+ LA+      G   ++F+V D  D   
Sbjct: 1   ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGP-KVRFVVADARDLPF 59

Query: 227 LERQFQLVM 235
            E  F LV+
Sbjct: 60  EEGSFDLVI 68

This family appears to be a methyltransferase domain. Length = 97

>gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 22/88 (25%), Positives = 38/88 (43%), Gaps = 2/88 (2%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--T 225
           VLD+G G G L   L+    + +TGVD S  A+ LA+  A       ++ L  D  +   
Sbjct: 2   VLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP 61

Query: 226 KLERQFQLVMDKGTLDAIGLHPDGPLKR 253
           + +  F +++    L  +       L+ 
Sbjct: 62  EADESFDVIISDPPLHHLVEDLARFLEE 89

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107

>gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain

 Score = 51.9 bits (125), Expect = 6e-09
 Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 2/79 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD- 224
            VLDIG G G L  EL++    + +TGVD S + + LA+  A       I F+  D  D 
Sbjct: 4   RVLDIGCGTGSLAIELARLFPGARVTGVDLSPEMLELARENAKLALGPRITFVQGDAPDA 63

Query: 225 TKLERQFQLVMDKGTLDAI 243
             L   F  V   G    +
Sbjct: 64  LDLLEGFDAVFIGGGGGDL 82

Protein in this family function as methyltransferases. Length = 104

>gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase

 Score = 53.1 bits (128), Expect = 2e-08
 Identities = 31/95 (32%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 143 HMLNHVE-DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201
           H +N +  D   + + +N K L    VLD+G G GLL + L++ G  ++TG+D SE+ I 
Sbjct: 23  HKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIE 81

Query: 202 LAQSLANRDGFSCIKFLVDDV--LDTKLERQFQLV 234
           +A+  A +D    I++    V  L  K  + F +V
Sbjct: 82  VAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVV 116

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224

>gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 6/60 (10%)

Query: 169 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE 228
           LD+G G GLL + L+++G + +TGVD S + + LA+  A        KF+V D  D    
Sbjct: 1   LDVGCGTGLLAEALARRGGARVTGVDLSPEMLALARKRAP------RKFVVGDAEDLPFP 54

Members of this family are SAM dependent methyltransferases. Length = 92

>gnl|CDD|203189 pfam05175, MTS, Methyltransferase small domain

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 16/72 (22%), Positives = 31/72 (43%), Gaps = 1/72 (1%)

Query: 165 SWSVLDIGTGNGLL-LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL 223
              VLD+G G G+L      +    ++T VD +  A+  A++    +G    +    D+ 
Sbjct: 32  GGKVLDLGCGYGVLGAALAKRSPDLEVTMVDINARALESARANLAANGLENGEVFWSDLY 91

Query: 224 DTKLERQFQLVM 235
                 +F L++
Sbjct: 92  SAVEPGKFDLII 103

This domain is found in ribosomal RNA small subunit methyltransferase C as well as other methyltransferases . Length = 170

>gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 15/98 (15%)

Query: 169 LDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--T 225
           LDIG G G LL+ L +     + TGVD S  A+  A       G      +  DVLD   
Sbjct: 1   LDIGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAID 60

Query: 226 KLERQFQLVMDKGTLDAIG------------LHPDGPL 251
                F +V+    L  +             L P G L
Sbjct: 61  LDPGSFDVVVASNVLHHLADPRAVLRNLRRLLKPGGVL 98

Members of this family are SAM dependent methyltransferases. Length = 98

>gnl|CDD|226608 COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 20/85 (23%), Positives = 42/85 (49%), Gaps = 12/85 (14%)

Query: 163 LSSWS-------VLDIGTGNGLLLQELS-KQGFSDLTGVDYSEDAINLAQ-SLANRDGFS 213
           L++++       +LD+G GNG L   L+ +   + + GV+  E+A  +AQ ++A      
Sbjct: 36  LAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEE 95

Query: 214 CIKFLVDDVLD---TKLERQFQLVM 235
            I+ +  D+ +     +   F L++
Sbjct: 96  RIQVIEADIKEFLKALVFASFDLII 120

Length = 248

>gnl|CDD|234248 TIGR03534, RF_mod_PrmC, protein-(glutamine-N5) methyltransferase, release factor-specific

 Score = 42.8 bits (102), Expect = 5e-05
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 166 WSVLDIGTGNGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDD 221
             VLD+GTG+G     L +E      + +T VD S +A+ +A+  A R G   ++FL  D
Sbjct: 89  LRVLDLGTGSGAIALALAKERPD---ARVTAVDISPEALAVARKNAARLGLDNVEFLQSD 145

Query: 222 VLDTKLERQFQLV 234
             +     +F L+
Sbjct: 146 WFEPLPGGKFDLI 158

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3 [Protein fate, Protein modification and repair]. Length = 251

>gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 24/70 (34%), Positives = 35/70 (50%), Gaps = 3/70 (4%)

Query: 143 HMLNHV-EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201
           H +N +  D   E        L    VLD+G G G+L + L++ G S +TG+D SE  I 
Sbjct: 38  HKINPLRLDYIREVARLRFD-LPGLRVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIE 95

Query: 202 LAQSLANRDG 211
           +A+  A   G
Sbjct: 96  VAKLHALESG 105

Length = 243

>gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

 Score = 41.3 bits (98), Expect = 2e-04
 Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 4/62 (6%)

Query: 143 HMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL 202
           H +N    L+   + E+   L    VLD+G G G+L + +++ G  D+TG+D SE+ I +
Sbjct: 30  HRINP---LRLNYIREHAGGLFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEV 85

Query: 203 AQ 204
           A+
Sbjct: 86  AR 87

Length = 233

>gnl|CDD|236467 PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

 Score = 39.8 bits (94), Expect = 7e-04
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 7/72 (9%)

Query: 167 SVLDIGTGNGL----LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV 222
            VLD+GTG+G     L +E      +++T VD S +A+ +A+  A     + ++FL  D 
Sbjct: 111 RVLDLGTGSGAIALALAKERPD---AEVTAVDISPEALAVARRNAKHGLGARVEFLQGDW 167

Query: 223 LDTKLERQFQLV 234
            +     +F L+
Sbjct: 168 FEPLPGGRFDLI 179

Length = 275

>gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain

 Score = 38.6 bits (90), Expect = 8e-04
 Identities = 19/34 (55%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAI 200
            VLDIG G G+LL+ L ++GF D+TGVD S  A+
Sbjct: 25  RVLDIGCGTGILLRLLRERGF-DVTGVDPSPAAV 57

This family appears to be a methyltransferase domain. Length = 154

>gnl|CDD|225443 COG2890, HemK, Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

 Score = 39.2 bits (92), Expect = 9e-04
 Identities = 23/69 (33%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
            +LD+GTG+G +   L+K+G  +++  VD S DA+ LA+  A R+G   +  +  D+ + 
Sbjct: 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE- 171

Query: 226 KLERQFQLV 234
            L  +F L+
Sbjct: 172 PLRGKFDLI 180

Length = 280

>gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain

 Score = 37.8 bits (88), Expect = 0.001
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 4/74 (5%)

Query: 165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDV 222
              VLD G G+G  L   ++ G  + + GV+   +A  LA+      G +  ++ +V D 
Sbjct: 1   GDRVLDPGAGSGAFLLAAARAGPDARVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60

Query: 223 LDTKLER--QFQLV 234
            +        F LV
Sbjct: 61  RELLELPDGSFDLV 74

This family contains methyltransferase domains. Length = 117

>gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

 Score = 39.1 bits (88), Expect = 0.001
 Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 8/81 (9%)

Query: 168 VLDIGTGNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
           VLDIG G G   LL  L  +G   + GVD S + + LA++ A   G   + F+V D L  
Sbjct: 52  VLDIGCGTGRLALLARLGGRGA-YVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGG 110

Query: 226 KLERQFQLVMDKGTLDAIGLH 246
            L        D  + D +   
Sbjct: 111 VLP-----FEDSASFDLVISL 126

Length = 257

>gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 29/77 (37%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS-LANRDGFSCIKFLVDD 221
           L    VLD G G GLL  EL+K+G + +  VD SE  + +A++    RD    ++F V+D
Sbjct: 54  LKGKRVLDAGCGTGLLSIELAKRG-AIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVND 112

Query: 222 VLDTKLERQFQLV--MD 236
           +L   L  +F +V  MD
Sbjct: 113 LL--SLCGEFDIVVCMD 127

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219

>gnl|CDD|237872 PRK14968, PRK14968, putative methyltransferase; Provisional

 Score = 37.6 bits (88), Expect = 0.002
 Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVL 223
             VL++GTG+G++    +K G   + GVD +  A+  A+  A  +      ++ +  D+ 
Sbjct: 25  DRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLF 83

Query: 224 DTKLERQFQLV 234
           +     +F ++
Sbjct: 84  EPFRGDKFDVI 94

Length = 188

>gnl|CDD|213903 TIGR04290, meth_Rta_06860, methyltransferase, Rta_06860 family

 Score = 37.8 bits (88), Expect = 0.002
 Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 4/80 (5%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS-LANRDGFSCIKFLVDD 221
           LS WSVLDIG   G    E+ ++G   + G+D   D   LAQ+  A     + I+F    
Sbjct: 48  LSGWSVLDIGCNAGFYSIEMKRRGAGRVLGID--SDPRYLAQARFAAEVLGADIEFRQMS 105

Query: 222 VLDT-KLERQFQLVMDKGTL 240
           V D  +L  +F LV+  G L
Sbjct: 106 VYDLGRLGERFDLVLFMGVL 125

Members of this family are methyltransferases that mark a widely distributed large conserved gene neighborhood of unknown function. It appears most common in soil and rhizosphere bacteria. Length = 226

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	253
KOG1271	227	consensus Methyltransferases [General function pre	99.95
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.79
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	99.65
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.64
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.63
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	99.6
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.59
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.58
PRK11207	197	tellurite resistance protein TehB; Provisional	99.56
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.49
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.48
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.48
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	99.47
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	99.47
PRK05785	226	hypothetical protein; Provisional	99.46
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.44
PRK12335	287	tellurite resistance protein TehB; Provisional	99.44
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.44
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.44
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.44
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.43
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.42
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.42
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	99.41
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.39
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.39
PLN02244	340	tocopherol O-methyltransferase	99.39
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.39
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	99.37
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.36
PRK13255	218	thiopurine S-methyltransferase; Reviewed	99.35
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	99.35
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.35
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.35
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.35
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.35
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.3
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.3
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.3
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	99.29
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.29
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.29
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.29
PRK06202	232	hypothetical protein; Provisional	99.28
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.28
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.28
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	99.28
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.27
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.27
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.27
PLN02336	475	phosphoethanolamine N-methyltransferase	99.27
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	99.27
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.26
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.26
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.25
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.25
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	99.25
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.25
COG4123	248	Predicted O-methyltransferase [General function pr	99.24
PRK13256	226	thiopurine S-methyltransferase; Reviewed	99.24
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.23
COG2890	280	HemK Methylase of polypeptide chain release factor	99.23
PRK14967	223	putative methyltransferase; Provisional	99.23
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.23
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.22
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	99.22
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.22
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	99.21
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.21
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.2
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.2
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	99.19
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.18
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.18
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	99.17
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	99.16
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.16
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.16
PRK06922	677	hypothetical protein; Provisional	99.15
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.15
PLN02490	340	MPBQ/MSBQ methyltransferase	99.15
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.14
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.14
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.14
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.12
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	99.12
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.11
PRK14968	188	putative methyltransferase; Provisional	99.11
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	99.11
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.11
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.11
PRK08317	241	hypothetical protein; Provisional	99.09
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	99.09
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	99.09
PHA03411	279	putative methyltransferase; Provisional	99.08
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.07
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	99.07
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	99.07
PRK07402	196	precorrin-6B methylase; Provisional	99.06
PRK14904	445	16S rRNA methyltransferase B; Provisional	99.06
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	99.06
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	99.05
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	99.05
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	99.05
PLN02336	475	phosphoethanolamine N-methyltransferase	99.04
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	99.04
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	99.03
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	99.03
PHA03412	241	putative methyltransferase; Provisional	99.02
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.02
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.02
PRK14901	434	16S rRNA methyltransferase B; Provisional	99.02
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	99.01
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	99.01
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.01
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.01
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.0
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.0
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.0
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.99
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.99
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.98
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.98
PRK04266	226	fibrillarin; Provisional	98.97
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.96
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.96
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.96
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.96
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.96
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.96
PLN03075	296	nicotianamine synthase; Provisional	98.95
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.94
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.92
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.92
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.86
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.85
PLN02672	1082	methionine S-methyltransferase	98.84
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.84
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.83
TIGR03438	301	probable methyltransferase. This model represents	98.83
COG2265	432	TrmA SAM-dependent methyltransferases related to t	98.82
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.82
PRK04457	262	spermidine synthase; Provisional	98.8
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.79
PRK04148	134	hypothetical protein; Provisional	98.77
KOG2904	328	consensus Predicted methyltransferase [General fun	98.76
TIGR00438	188	rrmJ cell division protein FtsJ.	98.76
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.75
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.75
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	98.72
KOG4300	252	consensus Predicted methyltransferase [General fun	98.72
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.71
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.7
PLN02476	278	O-methyltransferase	98.7
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.69
PRK00811	283	spermidine synthase; Provisional	98.69
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.68
KOG3010	261	consensus Methyltransferase [General function pred	98.68
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.67
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.67
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.66
COG4976	287	Predicted methyltransferase (contains TPR repeat)	98.64
COG4122	219	Predicted O-methyltransferase [General function pr	98.64
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.61
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.6
PTZ00146	293	fibrillarin; Provisional	98.59
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.59
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.55
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	98.53
COG2520	341	Predicted methyltransferase [General function pred	98.52
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.52
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.49
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.49
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.49
PLN02366	308	spermidine synthase	98.44
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	98.43
KOG2361	264	consensus Predicted methyltransferase [General fun	98.43
PRK03612	521	spermidine synthase; Provisional	98.42
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.41
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	98.41
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.39
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.39
PRK01581	374	speE spermidine synthase; Validated	98.39
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	98.35
COG4076	252	Predicted RNA methylase [General function predicti	98.33
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	98.32
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.27
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	98.25
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	98.23
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	98.23
PF13679	141	Methyltransf_32: Methyltransferase domain	98.2
KOG2730	263	consensus Methylase [General function prediction o	98.18
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	98.16
KOG2899	288	consensus Predicted methyltransferase [General fun	98.15
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	98.12
COG3897	218	Predicted methyltransferase [General function pred	98.11
PLN02232	160	ubiquinone biosynthesis methyltransferase	98.07
KOG2940	325	consensus Predicted methyltransferase [General fun	98.06
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	98.05
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.03
PLN02823	336	spermine synthase	98.02
KOG2352	482	consensus Predicted spermine/spermidine synthase [	98.01
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	98.01
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	97.98
PRK10742	250	putative methyltransferase; Provisional	97.97
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.97
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.97
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	97.94
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.92
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.86
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.86
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	97.86
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.85
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.82
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.79
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.77
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.69
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.65
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	97.61
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.59
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.58
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.58
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.57
COG2521	287	Predicted archaeal methyltransferase [General func	97.56
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.56
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	97.5
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	97.42
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.4
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	97.35
KOG1501	636	consensus Arginine N-methyltransferase [General fu	97.29
PHA01634	156	hypothetical protein	97.26
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.23
PRK00536	262	speE spermidine synthase; Provisional	97.19
KOG1331	293	consensus Predicted methyltransferase [General fun	97.17
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	97.16
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.08
COG3129	292	Predicted SAM-dependent methyltransferase [General	97.01
COG2384	226	Predicted SAM-dependent methyltransferase [General	97.0
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.99
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	96.97
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	96.96
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	96.88
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.73
KOG4058	199	consensus Uncharacterized conserved protein [Funct	96.7
COG0286	489	HsdM Type I restriction-modification system methyl	96.69
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.68
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	96.57
PRK11524	284	putative methyltransferase; Provisional	96.54
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.51
KOG1227	351	consensus Putative methyltransferase [General func	96.5
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	96.41
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.4
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	96.34
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	96.26
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	96.25
PRK13699	227	putative methylase; Provisional	96.23
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.21
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	96.19
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.17
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	96.15
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	96.12
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	96.04
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	95.96
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	95.93
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	95.93
KOG3115	249	consensus Methyltransferase-like protein [General	95.83
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.8
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	95.43
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	95.08
PF04672	267	Methyltransf_19: S-adenosyl methyltransferase; Int	94.91
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	94.86
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	94.61
KOG2078	495	consensus tRNA modification enzyme [RNA processing	94.4
COG1565	370	Uncharacterized conserved protein [Function unknow	93.92
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	93.74
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	93.57
PF06962	140	rRNA_methylase: Putative rRNA methylase; InterPro:	93.32
COG1255	129	Uncharacterized protein conserved in archaea [Func	92.87
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	92.85
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	92.81
PF03686	127	UPF0146: Uncharacterised protein family (UPF0146);	92.69
KOG3201	201	consensus Uncharacterized conserved protein [Funct	92.59
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	92.57
KOG2920	282	consensus Predicted methyltransferase [General fun	91.96
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	91.79
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	91.77
COG1568	354	Predicted methyltransferases [General function pre	91.23
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	90.77
PRK10458	467	DNA cytosine methylase; Provisional	90.39
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	89.49
KOG2912	419	consensus Predicted DNA methylase [Function unknow	89.3
PLN02668	386	indole-3-acetate carboxyl methyltransferase	89.1
PF02254	116	TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg	88.9
KOG2360	413	consensus Proliferation-associated nucleolar prote	88.5
PF03492	334	Methyltransf_7: SAM dependent carboxyl methyltrans	87.89
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	87.73
TIGR00497	501	hsdM type I restriction system adenine methylase (	87.4
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	86.12
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	85.8
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	85.75
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	85.67
PTZ00357	1072	methyltransferase; Provisional	85.66
COG4798	238	Predicted methyltransferase [General function pred	85.51
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	85.37
PF11899	380	DUF3419: Protein of unknown function (DUF3419); In	84.57
COG0863	302	DNA modification methylase [DNA replication, recom	84.32
PRK08339	263	short chain dehydrogenase; Provisional	84.23
PRK07904	253	short chain dehydrogenase; Provisional	83.92
PRK08703	239	short chain dehydrogenase; Provisional	83.71
PRK07523	255	gluconate 5-dehydrogenase; Provisional	83.34
KOG0821	326	consensus Predicted ribosomal RNA adenine dimethyl	83.13
PF07279	218	DUF1442: Protein of unknown function (DUF1442); In	82.74
TIGR02356	202	adenyl_thiF thiazole biosynthesis adenylyltransfer	82.72
PRK05867	253	short chain dehydrogenase; Provisional	82.42
KOG1201	300	consensus Hydroxysteroid 17-beta dehydrogenase 11	82.28
PRK06124	256	gluconate 5-dehydrogenase; Provisional	82.08
PF02086	260	MethyltransfD12: D12 class N6 adenine-specific DNA	82.0
PRK08213	259	gluconate 5-dehydrogenase; Provisional	81.79
PRK07326	237	short chain dehydrogenase; Provisional	81.77
PRK07102	243	short chain dehydrogenase; Provisional	81.71
PRK06125	259	short chain dehydrogenase; Provisional	81.15
PRK08945	247	putative oxoacyl-(acyl carrier protein) reductase;	81.01
PRK08862	227	short chain dehydrogenase; Provisional	80.97
PRK07890	258	short chain dehydrogenase; Provisional	80.91
PF00106	167	adh_short: short chain dehydrogenase alcohol dehyd	80.9
PRK05876	275	short chain dehydrogenase; Provisional	80.84
PRK06172	253	short chain dehydrogenase; Provisional	80.78
PRK09291	257	short chain dehydrogenase; Provisional	80.57
PRK07677	252	short chain dehydrogenase; Provisional	80.22
PF01488	135	Shikimate_DH: Shikimate / quinate 5-dehydrogenase;	80.16

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=99.95  E-value=4.2e-27  Score=192.22  Aligned_cols=149  Identities=56%  Similarity=0.929  Sum_probs=132.4

Q ss_pred             CCCCcCCCCchhhHhHHHHHHHhccccCCCcceeecCcchhHHHHHhhhhcceeecCCCcCCccccccchHHHHhccCCC
Q 025428           85 PEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLS  164 (253)
Q Consensus        85 ~~~~~~~l~~~~~Wd~~y~~~~~~~~~~~~~~e~wf~~~~~~~~~~w~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~  164 (253)
                      .++..+.||+++|||+.|+.++.||.++++.|++||++.+.+++..|....+. +.+  +.                 ..
T Consensus         8 adl~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~-~~r--v~-----------------~~   67 (227)
T KOG1271|consen    8 ADLGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIV-ISR--VS-----------------KQ   67 (227)
T ss_pred             ccccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhh-hhh--hc-----------------cc
Confidence            56889999999999999999999999999999999999999999999976653 111  00                 12


Q ss_pred             CCEEEEEcCCCcHHHHHHHhcCCC-cEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcC-CCCccEEEEccccc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-ERQFQLVMDKGTLD  241 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~g~~-~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~-~~~fD~Vi~~~~l~  241 (253)
                      -.+|||+|||+|.++..|++.|+. ..+|+|+|+.++++|+..+++.+++| |+|.+.|+....+ +++||+|+..++++
T Consensus        68 A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~D  147 (227)
T KOG1271|consen   68 ADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLD  147 (227)
T ss_pred             ccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCcee
Confidence            239999999999999999999887 49999999999999999999999987 9999999999754 59999999999999


Q ss_pred             eeccCCCCCCCC
Q 025428          242 AIGLHPDGPLKR  253 (253)
Q Consensus       242 ~i~~~pd~~~~~  253 (253)
                      +|.++|+.+.+|
T Consensus       148 AisLs~d~~~~r  159 (227)
T KOG1271|consen  148 AISLSPDGPVGR  159 (227)
T ss_pred             eeecCCCCcccc
Confidence            999999998765

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.79  E-value=9.4e-19  Score=151.28  Aligned_cols=129  Identities=20%  Similarity=0.357  Sum_probs=111.8

Q ss_pred             CcChHhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCcCCCCchhhHhHHHHHHHhccccCCCcceeecCcchhHHHH
Q 025428           50 TLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVA  129 (253)
Q Consensus        50 ~~~~~~r~~~~~~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Wd~~y~~~~~~~~~~~~~~e~wf~~~~~~~~~  129 (253)
                      +++..++...+.++|++     ++..||.+|+.       +++|.+..|......                         
T Consensus         3 ~~~~~~k~~~v~~vF~~-----ia~~YD~~n~~-------~S~g~~~~Wr~~~i~-------------------------   45 (238)
T COG2226           3 MVAKDEKQEKVQKVFDK-----VAKKYDLMNDL-------MSFGLHRLWRRALIS-------------------------   45 (238)
T ss_pred             cccccccHHHHHHHHHh-----hHHHHHhhccc-------ccCcchHHHHHHHHH-------------------------
Confidence            35566778899999988     99999999988       889999999987211                         


Q ss_pred             HhhhhcceeecCCCcCCccccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHH
Q 025428          130 SWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN  208 (253)
Q Consensus       130 ~w~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~  208 (253)
                       +.                            ...++.+|||+|||||.++..+++. |..+|+|+|+|+.||+.|++++.
T Consensus        46 -~~----------------------------~~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~   96 (238)
T COG2226          46 -LL----------------------------GIKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLK   96 (238)
T ss_pred             -hh----------------------------CCCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhh
Confidence             22                            1126789999999999999999998 54599999999999999999999


Q ss_pred             hcCCCceEEEEeccCCCcCC-CCccEEEEccccceec
Q 025428          209 RDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAIG  244 (253)
Q Consensus       209 ~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~i~  244 (253)
                      ..+..+++|+++|++++|++ ++||+|++...|+++.
T Consensus        97 ~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~fglrnv~  133 (238)
T COG2226          97 KKGVQNVEFVVGDAENLPFPDNSFDAVTISFGLRNVT  133 (238)
T ss_pred             ccCccceEEEEechhhCCCCCCccCEEEeeehhhcCC
Confidence            88877799999999999997 9999999999999874

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=99.65  E-value=2.4e-15  Score=133.58  Aligned_cols=171  Identities=19%  Similarity=0.239  Sum_probs=125.0

Q ss_pred             eeeeccCCCcChHhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCcCCCCchhhHhHHHHHHHhccccCCCcce-eec
Q 025428           42 SIKSEYGSTLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGE-VWF  120 (253)
Q Consensus        42 ~~~~~~~~~~~~~~r~~~~~~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Wd~~y~~~~~~~~~~~~~~e-~wf  120 (253)
                      .++++|+.+.+..++..+....+..   +.  ......          ...-..+.|...|...+.+.    ..++ .|.
T Consensus        57 ~~~a~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~----------~~~~~e~DW~~~wk~~~~P~----rig~~f~I  117 (300)
T COG2264          57 KVKALFPADTDLALLLAELEALLAL---LE--LFAHVI----------EQEEDEEDWEREWKKYFHPV----RIGERFVI  117 (300)
T ss_pred             eeEeeecccchHHHHHHHHHHHhcc---cc--ccccee----------EeecChHHHHHHHHhcCCcE----EeeeeEEE
Confidence            4788999999999998888888833   21  111000          11122455666655443333    3444 233


Q ss_pred             CcchhHHHHHhh------hhcceeecCCCcCCccccc-cchHHHHhccC-CCCCEEEEEcCCCcHHHHHHHhcCCCcEEE
Q 025428          121 GADVMDVVASWT------KSLCISISQGHMLNHVEDL-KSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTG  192 (253)
Q Consensus       121 ~~~~~~~~~~w~------~~~~~~i~~~~~~~~~~~~-~~~l~~~l~~~-~~~~~VLDiGcGtG~~~~~la~~g~~~v~g  192 (253)
                      .       ++|.      ...+.++.++..++++++. +..+++++.++ +++.+|||+|||+|.+++..++.|+++|+|
T Consensus       118 ~-------Psw~~~~~~~~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g  190 (300)
T COG2264         118 V-------PSWREYPEPSDELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVG  190 (300)
T ss_pred             C-------CCCccCCCCCCceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEE
Confidence            2       2354      4567899999999998865 88888999887 788999999999999999999999999999


Q ss_pred             EeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEcc
Q 025428          193 VDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       193 vD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      +|+++-+++.|++|+..|++.. ++....+....+..++||+|++|-
T Consensus       191 ~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVANI  237 (300)
T COG2264         191 VDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVANI  237 (300)
T ss_pred             ecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEehh
Confidence            9999999999999999999864 444444444444447999999976

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.64  E-value=8e-16  Score=133.38  Aligned_cols=81  Identities=27%  Similarity=0.411  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||||.++..++++ + ..+|+|+|+|++|++.|+++++..+..+|+++++|++++|++ ++||+|++...
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~fg  125 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSFG  125 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES-
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHhh
Confidence            46789999999999999999987 3 248999999999999999999988888999999999999986 89999999999


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      |+.+
T Consensus       126 lrn~  129 (233)
T PF01209_consen  126 LRNF  129 (233)
T ss_dssp             GGG-
T ss_pred             HHhh
Confidence            9876

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.63  E-value=1.6e-15  Score=130.43  Aligned_cols=134  Identities=14%  Similarity=0.273  Sum_probs=112.6

Q ss_pred             eeccC-CCcChHhHHHHHHHHHHhhcccccCCCCCCCCCCCCCCCCcCCCCchhhHhHHHHHHHhccccCCCcceeecCc
Q 025428           44 KSEYG-STLDDDQRHADAAEALSSAANFRANSDYNSDKEEPDPEGMASMLGLQSYWDSAYADELANFREHGHAGEVWFGA  122 (253)
Q Consensus        44 ~~~~~-~~~~~~~r~~~~~~vf~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Wd~~y~~~~~~~~~~~~~~e~wf~~  122 (253)
                      .|-|| +|+.+.++.+.+..||++     ++..||.|||.       +++|.++.|++.+-.                  
T Consensus        45 ~Thfgf~tV~e~eke~~V~~vF~~-----vA~~YD~mND~-------mSlGiHRlWKd~~v~------------------   94 (296)
T KOG1540|consen   45 CTHFGFKTVRESEKERLVHHVFES-----VAKKYDIMNDA-------MSLGIHRLWKDMFVS------------------   94 (296)
T ss_pred             cccccccccchhhhhhHHHHHHHH-----HHHHHHHHHHH-------hhcchhHHHHHHhhh------------------
Confidence            34555 478899999999999988     89999999999       999999999886222                  


Q ss_pred             chhHHHHHhhhhcceeecCCCcCCccccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CC------CcEEEEeC
Q 025428          123 DVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GF------SDLTGVDY  195 (253)
Q Consensus       123 ~~~~~~~~w~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~------~~v~gvD~  195 (253)
                              |.                            .+..+.++||++||||.+++.+.++ +.      ++|+++|+
T Consensus        95 --------~L----------------------------~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Di  138 (296)
T KOG1540|consen   95 --------KL----------------------------GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDI  138 (296)
T ss_pred             --------cc----------------------------CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeC
Confidence                    32                            1235689999999999999999987 33      58999999


Q ss_pred             CHHHHHHHHHHHHhcCCC---ceEEEEeccCCCcCC-CCccEEEEcccccee
Q 025428          196 SEDAINLAQSLANRDGFS---CIKFLVDDVLDTKLE-RQFQLVMDKGTLDAI  243 (253)
Q Consensus       196 s~~~l~~ar~~~~~~g~~---~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~i  243 (253)
                      |++||++++++.++.++.   .+.|+++|++++|++ .+||.++..+-+...
T Consensus       139 np~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTiafGIRN~  190 (296)
T KOG1540|consen  139 NPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIAFGIRNV  190 (296)
T ss_pred             CHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEecceecC
Confidence            999999999999877764   389999999999998 999999987766544

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=99.60  E-value=3e-15  Score=133.66  Aligned_cols=140  Identities=22%  Similarity=0.310  Sum_probs=96.7

Q ss_pred             hhhHhHHHHHHHhccccCCCcce-eecCcchhHHHHHhhhhcceeecCCCcCCccccc-cchHHHHhccC-CCCCEEEEE
Q 025428           95 QSYWDSAYADELANFREHGHAGE-VWFGADVMDVVASWTKSLCISISQGHMLNHVEDL-KSEPVEENDKY-LSSWSVLDI  171 (253)
Q Consensus        95 ~~~Wd~~y~~~~~~~~~~~~~~e-~wf~~~~~~~~~~w~~~~~~~i~~~~~~~~~~~~-~~~l~~~l~~~-~~~~~VLDi  171 (253)
                      .+.|...|++.+.++.    .++ .|.-.. -+....-..+....|.+++.++++.+. ++.+++++.++ .++.+|||+
T Consensus        94 ~~dW~~~Wk~~~~P~~----vg~~~~I~P~-w~~~~~~~~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDv  168 (295)
T PF06325_consen   94 EEDWEEAWKKYFKPIR----VGDRLVIVPS-WEEYPEPPDEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDV  168 (295)
T ss_dssp             HHCHHHHHHHH---EE----ECTTEEEEET-T----SSTTSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEE
T ss_pred             cccchHHHHhcCccEE----ECCcEEEECC-CcccCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEe
Confidence            5678888888777765    232 222111 011111234556789999999998755 88888998887 667899999


Q ss_pred             cCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          172 GTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       172 GcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      |||||.+++..++.|+++|+|+|+++.+++.|++|++.||+.. ++......+. ...+||+|++|-..+
T Consensus       169 G~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~-~~~v~~~~~~-~~~~~dlvvANI~~~  236 (295)
T PF06325_consen  169 GCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVED-RIEVSLSEDL-VEGKFDLVVANILAD  236 (295)
T ss_dssp             S-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TT-CEEESCTSCT-CCS-EEEEEEES-HH
T ss_pred             CCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCe-eEEEEEeccc-ccccCCEEEECCCHH
Confidence            9999999999999999999999999999999999999999975 3322222222 238999999976544

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.59  E-value=1.1e-14  Score=117.57  Aligned_cols=81  Identities=35%  Similarity=0.564  Sum_probs=71.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHHh-c-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CCCCccEEEEccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSK-Q-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGT  239 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~-~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~~~fD~Vi~~~~  239 (253)
                      ++.+|||+|||+|.++..+++ . ...+++|+|+|++|++.|+++++..++.+++|+++|+.+++  ++++||+|++..+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~~   82 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNGV   82 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEEST
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcCc
Confidence            578999999999999999994 3 23489999999999999999999999989999999999976  4489999999999


Q ss_pred             cceec
Q 025428          240 LDAIG  244 (253)
Q Consensus       240 l~~i~  244 (253)
                      +|++.
T Consensus        83 l~~~~   87 (152)
T PF13847_consen   83 LHHFP   87 (152)
T ss_dssp             GGGTS
T ss_pred             hhhcc
Confidence            98763

...

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.58  E-value=2.1e-14  Score=109.46  Aligned_cols=80  Identities=31%  Similarity=0.505  Sum_probs=67.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEecc-CCCcCCCCccEEEEcc-c
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDV-LDTKLERQFQLVMDKG-T  239 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~-~~~~~~~~fD~Vi~~~-~  239 (253)
                      ++.+|||||||+|.++..++++ +..+|+|+|+|++|++.|++++...+. .+++++++|+ ......+.||+|++.+ +
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~   80 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT   80 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence            4679999999999999999993 344899999999999999999965554 4799999999 4455557899999999 5


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      ++++
T Consensus        81 ~~~~   84 (112)
T PF12847_consen   81 LHFL   84 (112)
T ss_dssp             GGGC
T ss_pred             cccc
Confidence            5543

...

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.56  E-value=1.8e-14  Score=121.74  Aligned_cols=90  Identities=21%  Similarity=0.314  Sum_probs=77.8

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCc
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQF  231 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~f  231 (253)
                      .+.+++.+.. .++.+|||+|||+|.++..|+++|. +|+|+|+|+.|++.++++....++.++++.++|+.+++++++|
T Consensus        19 ~~~l~~~l~~-~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~f   96 (197)
T PRK11207         19 HSEVLEAVKV-VKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFDGEY   96 (197)
T ss_pred             hHHHHHhccc-CCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcCCCc
Confidence            3344444443 3568999999999999999999976 9999999999999999999888887899999999888777789


Q ss_pred             cEEEEcccccee
Q 025428          232 QLVMDKGTLDAI  243 (253)
Q Consensus       232 D~Vi~~~~l~~i  243 (253)
                      |+|++..++|++
T Consensus        97 D~I~~~~~~~~~  108 (197)
T PRK11207         97 DFILSTVVLMFL  108 (197)
T ss_pred             CEEEEecchhhC
Confidence            999999999886

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.49  E-value=2.2e-14  Score=122.91  Aligned_cols=79  Identities=33%  Similarity=0.488  Sum_probs=73.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||-|.++..+|+.|+ +|+|+|+++.+|+.|+..+...++ ++++.+..++++... ++||+|+|..+|+
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e~gv-~i~y~~~~~edl~~~~~~FDvV~cmEVlE  135 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALESGV-NIDYRQATVEDLASAGGQFDVVTCMEVLE  135 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhhccc-cccchhhhHHHHHhcCCCccEEEEhhHHH
Confidence            4788999999999999999999986 999999999999999999999887 688999999988765 8999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       136 Hv  137 (243)
T COG2227         136 HV  137 (243)
T ss_pred             cc
Confidence            98

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.48  E-value=2.1e-13  Score=115.11  Aligned_cols=88  Identities=18%  Similarity=0.277  Sum_probs=74.3

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCcc
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ  232 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD  232 (253)
                      ..+++.+.. .++.+|||+|||+|.++..++++|. +|+|+|+|+.|++.+++++..+++ ++.+.+.|+...+++++||
T Consensus        20 ~~l~~~~~~-~~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD   96 (195)
T TIGR00477        20 SAVREAVKT-VAPCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENL-PLRTDAYDINAAALNEDYD   96 (195)
T ss_pred             HHHHHHhcc-CCCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCC-CceeEeccchhccccCCCC
Confidence            344444443 3467999999999999999999976 999999999999999999888887 4888888987766667899


Q ss_pred             EEEEcccccee
Q 025428          233 LVMDKGTLDAI  243 (253)
Q Consensus       233 ~Vi~~~~l~~i  243 (253)
                      +|++..++|++
T Consensus        97 ~I~~~~~~~~~  107 (195)
T TIGR00477        97 FIFSTVVFMFL  107 (195)
T ss_pred             EEEEecccccC
Confidence            99999999987

Part of a tellurite-reducing operon tehA and tehB

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.48  E-value=4.9e-13  Score=117.79  Aligned_cols=81  Identities=23%  Similarity=0.329  Sum_probs=69.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHHh---cCCCceEEEEeccCCCcCC-CCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANR---DGFSCIKFLVDDVLDTKLE-RQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~~---~g~~~i~~~~~D~~~~~~~-~~fD~Vi~  236 (253)
                      .++.+|||+|||||.++..++++ +. .+|+|+|+|++|++.|+++...   .+..+++++++|+.+++++ ++||+|++
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~  151 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM  151 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence            45779999999999999999886 32 4899999999999999987542   2345799999999999886 79999999


Q ss_pred             cccccee
Q 025428          237 KGTLDAI  243 (253)
Q Consensus       237 ~~~l~~i  243 (253)
                      ..++|++
T Consensus       152 ~~~l~~~  158 (261)
T PLN02233        152 GYGLRNV  158 (261)
T ss_pred             ecccccC
Confidence            9999987

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=99.47  E-value=1.8e-13  Score=117.10  Aligned_cols=80  Identities=23%  Similarity=0.200  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc------------CCCceEEEEeccCCCcCC--
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------------GFSCIKFLVDDVLDTKLE--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~------------g~~~i~~~~~D~~~~~~~--  228 (253)
                      .++.+|||+|||.|..+..||.+|+ +|+|+|+|+.+|+.+.+.....            .-.+++++++|+.+++..  
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~  111 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL  111 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence            3667999999999999999999998 8999999999999864422110            112689999999998743  


Q ss_pred             CCccEEEEcccccee
Q 025428          229 RQFQLVMDKGTLDAI  243 (253)
Q Consensus       229 ~~fD~Vi~~~~l~~i  243 (253)
                      ++||.|+...+++|+
T Consensus       112 ~~fD~i~D~~~~~~l  126 (213)
T TIGR03840       112 GPVDAVYDRAALIAL  126 (213)
T ss_pred             CCcCEEEechhhccC
Confidence            689999999999887

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=99.47  E-value=3.9e-13  Score=112.94  Aligned_cols=89  Identities=30%  Similarity=0.413  Sum_probs=72.5

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCc
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQF  231 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~f  231 (253)
                      .+.+++.+.. .+..++||+|||.|+.+.+||++|+ .|+++|+|+.+++.+++.++..++ +|+..+.|+.+..+++.|
T Consensus        19 hs~v~~a~~~-~~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~~~l-~i~~~~~Dl~~~~~~~~y   95 (192)
T PF03848_consen   19 HSEVLEAVPL-LKPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEEEGL-DIRTRVADLNDFDFPEEY   95 (192)
T ss_dssp             -HHHHHHCTT-S-SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHHTT--TEEEEE-BGCCBS-TTTE
T ss_pred             cHHHHHHHhh-cCCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhhcCc-eeEEEEecchhccccCCc
Confidence            3445554443 4678999999999999999999999 899999999999999999988888 599999999998888899


Q ss_pred             cEEEEcccccee
Q 025428          232 QLVMDKGTLDAI  243 (253)
Q Consensus       232 D~Vi~~~~l~~i  243 (253)
                      |+|++..+++++
T Consensus        96 D~I~st~v~~fL  107 (192)
T PF03848_consen   96 DFIVSTVVFMFL  107 (192)
T ss_dssp             EEEEEESSGGGS
T ss_pred             CEEEEEEEeccC
Confidence            999998899887

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK05785 hypothetical protein; Provisional

Probab=99.46  E-value=3.2e-13  Score=116.57  Aligned_cols=72  Identities=22%  Similarity=0.273  Sum_probs=62.5

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~  242 (253)
                      ++.+|||+|||||.++..+++....+|+|+|+|++|++.|+++        ..++++|+.+++++ ++||+|++..++|+
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~--------~~~~~~d~~~lp~~d~sfD~v~~~~~l~~  122 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA--------DDKVVGSFEALPFRDKSFDVVMSSFALHA  122 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc--------cceEEechhhCCCCCCCEEEEEecChhhc
Confidence            4679999999999999999988323999999999999999864        14678999999876 89999999999988


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus       123 ~  123 (226)
T PRK05785        123 S  123 (226)
T ss_pred             c
Confidence            6

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.44  E-value=2.5e-13  Score=102.29  Aligned_cols=75  Identities=29%  Similarity=0.475  Sum_probs=63.0

Q ss_pred             EEEEcCCCcHHHHHHHhcC---C-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEc-cccc
Q 025428          168 VLDIGTGNGLLLQELSKQG---F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDK-GTLD  241 (253)
Q Consensus       168 VLDiGcGtG~~~~~la~~g---~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~-~~l~  241 (253)
                      |||+|||+|..+..+++..   . .+++|+|+|++|++.++++....+. +++++++|+.+++.. ++||+|++. .+++
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~~~~~D~v~~~~~~~~   79 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFSDGKFDLVVCSGLSLH   79 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHHSSSEEEEEE-TTGGG
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCcccCCCeeEEEEcCCccC
Confidence            7999999999999999872   1 5999999999999999999988776 899999999998754 799999995 5598


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus        80 ~~   81 (101)
T PF13649_consen   80 HL   81 (101)
T ss_dssp             GS
T ss_pred             CC
Confidence            85

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.44  E-value=5.6e-13  Score=118.91  Aligned_cols=89  Identities=22%  Similarity=0.386  Sum_probs=76.4

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCc
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQF  231 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~f  231 (253)
                      .+.++..+.. .++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++.++++++..++ ++++.+.|+....++++|
T Consensus       109 ~~~~~~~~~~-~~~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~~~~f  185 (287)
T PRK12335        109 HSEVLEAVQT-VKPGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASIQEEY  185 (287)
T ss_pred             cHHHHHHhhc-cCCCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccccCCc
Confidence            3344544433 3456999999999999999999976 999999999999999999988888 899999999887667899


Q ss_pred             cEEEEcccccee
Q 025428          232 QLVMDKGTLDAI  243 (253)
Q Consensus       232 D~Vi~~~~l~~i  243 (253)
                      |+|++..+||++
T Consensus       186 D~I~~~~vl~~l  197 (287)
T PRK12335        186 DFILSTVVLMFL  197 (287)
T ss_pred             cEEEEcchhhhC
Confidence            999999999987

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.44  E-value=1e-12  Score=108.55  Aligned_cols=92  Identities=26%  Similarity=0.439  Sum_probs=76.2

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCC-cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE  228 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~-~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~  228 (253)
                      ..+..|++.+... +..+|||+|||+|.++..+++++.. +|+++|+|+.+++.++++++.+++.++++++.|+.+...+
T Consensus        18 ~~t~lL~~~l~~~-~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~   96 (170)
T PF05175_consen   18 AGTRLLLDNLPKH-KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPD   96 (170)
T ss_dssp             HHHHHHHHHHHHH-TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCT
T ss_pred             HHHHHHHHHHhhc-cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccc
Confidence            3455666666664 7789999999999999999998554 6999999999999999999999987799999999887556


Q ss_pred             CCccEEEEccccce
Q 025428          229 RQFQLVMDKGTLDA  242 (253)
Q Consensus       229 ~~fD~Vi~~~~l~~  242 (253)
                      ++||+|+++..++.
T Consensus        97 ~~fD~Iv~NPP~~~  110 (170)
T PF05175_consen   97 GKFDLIVSNPPFHA  110 (170)
T ss_dssp             TCEEEEEE---SBT
T ss_pred             cceeEEEEccchhc
Confidence            89999999987653

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.44  E-value=4.7e-13  Score=113.83  Aligned_cols=77  Identities=27%  Similarity=0.462  Sum_probs=66.2

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-CCCccEEEEcc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  238 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-~~~fD~Vi~~~  238 (253)
                      ...++.+|||+|||+|.++..+++. +..+++|+|+|++|++.|+++.     .++.++++|+.+ ++ +++||+|++++
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~~~~sfD~V~~~~  113 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PFKDNFFDLVLTKG  113 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CCCCCCEEEEEECC
Confidence            3356679999999999999999887 4459999999999999999864     357889999988 55 48999999999


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      +|+|+
T Consensus       114 vL~hl  118 (204)
T TIGR03587       114 VLIHI  118 (204)
T ss_pred             hhhhC
Confidence            99998

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.44  E-value=4.1e-13  Score=98.43  Aligned_cols=72  Identities=29%  Similarity=0.511  Sum_probs=62.0

Q ss_pred             EEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccccee
Q 025428          169 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAI  243 (253)
Q Consensus       169 LDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~i  243 (253)
                      ||+|||+|..+..+++++..+++|+|+++++++.++++....   ++.++++|+.+++++ ++||+|++..++||+
T Consensus         1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~   73 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL   73 (95)
T ss_dssp             EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-TT-EEEEEEESHGGGS
T ss_pred             CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCccccccccccccccceeec
Confidence            899999999999999995559999999999999999987654   456999999999987 999999999999998

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.43  E-value=1.2e-12  Score=112.48  Aligned_cols=81  Identities=17%  Similarity=0.327  Sum_probs=71.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++.++++++..++.+++++++|+.+++++ ++||+|++..+
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~~  123 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFDDNSFDYVTIGFG  123 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCCCCCccEEEEecc
Confidence            46789999999999999999976 3 248999999999999999999888887899999999988765 79999999988


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      +|++
T Consensus       124 l~~~  127 (231)
T TIGR02752       124 LRNV  127 (231)
T ss_pred             cccC
Confidence            8875

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.42  E-value=4.7e-13  Score=117.25  Aligned_cols=79  Identities=27%  Similarity=0.382  Sum_probs=71.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc--CCCCccEEEEcccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LERQFQLVMDKGTL  240 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~--~~~~fD~Vi~~~~l  240 (253)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|++|++.|++++...++. +++++++|+.++.  .+++||+|+++.++
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~vl  122 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAVL  122 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehhHH
Confidence            457999999999999999999975 9999999999999999999888864 6999999998764  34799999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      ||+
T Consensus       123 ~~~  125 (255)
T PRK11036        123 EWV  125 (255)
T ss_pred             Hhh
Confidence            987

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.42  E-value=4.6e-13  Score=121.22  Aligned_cols=81  Identities=28%  Similarity=0.493  Sum_probs=71.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++.|+ +|+|||+|++|++.|+++....+. .+++++++|+.++++. ++||+|++..+|
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vL  208 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVI  208 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHH
Confidence            3567999999999999999998876 899999999999999988766544 3799999999988765 799999999999


Q ss_pred             ceec
Q 025428          241 DAIG  244 (253)
Q Consensus       241 ~~i~  244 (253)
                      ||+.
T Consensus       209 eHv~  212 (322)
T PLN02396        209 EHVA  212 (322)
T ss_pred             HhcC
Confidence            9983

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=99.41  E-value=2.1e-12  Score=115.34  Aligned_cols=135  Identities=21%  Similarity=0.352  Sum_probs=99.1

Q ss_pred             hhhHhHHHHHHHhccccCCCcce-eecCcchhHHHHHhh------hhcceeecCCCcCCccccc-cchHHHHhccC-CCC
Q 025428           95 QSYWDSAYADELANFREHGHAGE-VWFGADVMDVVASWT------KSLCISISQGHMLNHVEDL-KSEPVEENDKY-LSS  165 (253)
Q Consensus        95 ~~~Wd~~y~~~~~~~~~~~~~~e-~wf~~~~~~~~~~w~------~~~~~~i~~~~~~~~~~~~-~~~l~~~l~~~-~~~  165 (253)
                      .+.|...|++.+.++.    .++ .|.       .+.|.      ......+.++..++++.+. +..+++.+... .++
T Consensus        92 ~~dW~~~w~~~~~p~~----~g~~~~i-------~p~w~~~~~~~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g  160 (288)
T TIGR00406        92 SKDWERAWKDNFHPVQ----FGKRFWI-------CPSWRDVPSDEDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKD  160 (288)
T ss_pred             hhhHHHHHHHhCCCEE----EcCeEEE-------ECCCcCCCCCCCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCC
Confidence            4678887777665543    333 121       12232      3445678899988887765 55556666544 567


Q ss_pred             CEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .+|||+|||+|.++..+++.|..+|+|+|+|+.|++.|++++..+++. ++.+..++.... .+++||+|+++...+
T Consensus       161 ~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlVvan~~~~  236 (288)
T TIGR00406       161 KNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVIVANILAE  236 (288)
T ss_pred             CEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEEEEecCHH
Confidence            899999999999999999888779999999999999999999988876 367777764332 357899999986554

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.39  E-value=1.8e-12  Score=110.88  Aligned_cols=87  Identities=31%  Similarity=0.397  Sum_probs=73.3

Q ss_pred             hHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCc
Q 025428          154 EPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQF  231 (253)
Q Consensus       154 ~l~~~l~~-~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~f  231 (253)
                      .+++.+.. ..++.+|||+|||+|.++..+++.+. +|+|+|+|++|++.|++++...+.. ++.+.++|+.+++  ++|
T Consensus        44 ~~~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~f  120 (219)
T TIGR02021        44 KLLDWLPKDPLKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEF  120 (219)
T ss_pred             HHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCc
Confidence            34444442 34678999999999999999998865 9999999999999999998877653 7999999998875  789


Q ss_pred             cEEEEcccccee
Q 025428          232 QLVMDKGTLDAI  243 (253)
Q Consensus       232 D~Vi~~~~l~~i  243 (253)
                      |+|++..+++|+
T Consensus       121 D~ii~~~~l~~~  132 (219)
T TIGR02021       121 DIVVCMDVLIHY  132 (219)
T ss_pred             CEEEEhhHHHhC
Confidence            999999888776

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.39  E-value=1.2e-12  Score=109.31  Aligned_cols=75  Identities=19%  Similarity=0.294  Sum_probs=66.9

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      ++.+|||+|||+|.++..++..+ ..+|+|+|+|+.|++.++++++..++.+++++++|+.++...++||+|+++.
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~~  117 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSRA  117 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEehh
Confidence            57899999999999999988763 3489999999999999999999888878999999999875568999999976

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02244 tocopherol O-methyltransferase

Probab=99.39  E-value=1.8e-12  Score=118.42  Aligned_cols=81  Identities=26%  Similarity=0.356  Sum_probs=72.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..++++...+|+|+|+|+.|++.++++++..++. +++++++|+.+++++ ++||+|++..++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~  196 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESG  196 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCch
Confidence            356799999999999999999873339999999999999999999888875 699999999998876 899999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +|+
T Consensus       197 ~h~  199 (340)
T PLN02244        197 EHM  199 (340)
T ss_pred             hcc
Confidence            987

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.39  E-value=2.7e-12  Score=107.78  Aligned_cols=76  Identities=21%  Similarity=0.244  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      +++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|+++++.+++++++++++|+.++...++||+|+++.
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~~  120 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSRA  120 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEcc
Confidence            34789999999999999999875 34599999999999999999999999888999999999876667899999965

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=99.37  E-value=1.8e-12  Score=113.41  Aligned_cols=133  Identities=19%  Similarity=0.341  Sum_probs=92.6

Q ss_pred             hhhHhHHHHHHHhccccCCCcce-eecCcchhHHHHHhhhhcceeecCCCcCCcccc-ccchHHHHhccC-CCCCEEEEE
Q 025428           95 QSYWDSAYADELANFREHGHAGE-VWFGADVMDVVASWTKSLCISISQGHMLNHVED-LKSEPVEENDKY-LSSWSVLDI  171 (253)
Q Consensus        95 ~~~Wd~~y~~~~~~~~~~~~~~e-~wf~~~~~~~~~~w~~~~~~~i~~~~~~~~~~~-~~~~l~~~l~~~-~~~~~VLDi  171 (253)
                      .+.|...|++.+.++.    .++ .|.... -..... .......+.++..++++.+ .+..+++.+... .++.+|||+
T Consensus        53 ~~dw~~~w~~~~~p~~----~g~~~~i~p~-~~~~~~-~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDi  126 (250)
T PRK00517         53 DEDWEREWKKYFHPIR----IGDRLWIVPS-WEDPPD-PDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDV  126 (250)
T ss_pred             chhHHHHHHHHCCCEE----EcCCEEEECC-CcCCCC-CCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEe
Confidence            5578888888777655    222 121111 000011 2345667888887777654 356666666653 578899999


Q ss_pred             cCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          172 GTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       172 GcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      |||+|.++..+++.|..+|+|+|+|+.|++.|++++..+++. ++.+..+|.       +||+|+++...
T Consensus       127 GcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vvani~~  189 (250)
T PRK00517        127 GCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIVANILA  189 (250)
T ss_pred             CCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEEEcCcH
Confidence            999999999998888767999999999999999999988873 354444332       79999987543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.36  E-value=3.6e-12  Score=111.28  Aligned_cols=80  Identities=16%  Similarity=0.189  Sum_probs=69.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~---g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      .++.+|||+|||+|..+..+++.   +..+++|+|+|+.|++.|++++...+.. +++++++|+.+++++ .+|+|+++.
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~-~~D~vv~~~  133 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIE-NASMVVLNF  133 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCC-CCCEEehhh
Confidence            46789999999999999988872   2349999999999999999999887765 699999999988654 599999999


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      ++|++
T Consensus       134 ~l~~l  138 (247)
T PRK15451        134 TLQFL  138 (247)
T ss_pred             HHHhC
Confidence            99997

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=99.35  E-value=3.5e-12  Score=109.55  Aligned_cols=80  Identities=23%  Similarity=0.199  Sum_probs=65.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc------------CCCceEEEEeccCCCcCC--
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------------GFSCIKFLVDDVLDTKLE--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~------------g~~~i~~~~~D~~~~~~~--  228 (253)
                      .++.+|||+|||.|..+..|+.+|+ +|+|||+|+.+|+.+.+.....            .-.+|++.++|+.++...  
T Consensus        36 ~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~  114 (218)
T PRK13255         36 PAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL  114 (218)
T ss_pred             CCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence            3567999999999999999999988 8999999999999875321110            113689999999998643  


Q ss_pred             CCccEEEEcccccee
Q 025428          229 RQFQLVMDKGTLDAI  243 (253)
Q Consensus       229 ~~fD~Vi~~~~l~~i  243 (253)
                      ..||+|+...+++|+
T Consensus       115 ~~fd~v~D~~~~~~l  129 (218)
T PRK13255        115 ADVDAVYDRAALIAL  129 (218)
T ss_pred             CCeeEEEehHhHhhC
Confidence            689999999999987

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=99.35  E-value=3.6e-12  Score=112.56  Aligned_cols=81  Identities=23%  Similarity=0.409  Sum_probs=74.5

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      +.++.+|||||||.|.+++++|++ |. +|+|+++|+++.+.++++++..|+. +++++..|..++.  +.||-|++.+.
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y~v-~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~--e~fDrIvSvgm  146 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEYGV-TVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE--EPFDRIVSVGM  146 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHcCC-EEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc--cccceeeehhh
Confidence            378999999999999999999999 55 9999999999999999999999998 7999999999874  45999999999


Q ss_pred             cceecc
Q 025428          240 LDAIGL  245 (253)
Q Consensus       240 l~~i~~  245 (253)
                      ++|++.
T Consensus       147 fEhvg~  152 (283)
T COG2230         147 FEHVGK  152 (283)
T ss_pred             HHHhCc
Confidence            999865

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.35  E-value=2.4e-12  Score=112.75  Aligned_cols=75  Identities=21%  Similarity=0.252  Sum_probs=65.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..+++.. ..+|+|+|+|+.|++.|+++       +++++++|+.+++..++||+|+++.++|
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~fD~v~~~~~l~  100 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKPKPDTDVVVSNAALQ  100 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCCCCCceEEEEehhhh
Confidence            467899999999999999999872 23899999999999999763       5789999998875558999999999999


Q ss_pred             eec
Q 025428          242 AIG  244 (253)
Q Consensus       242 ~i~  244 (253)
                      |+.
T Consensus       101 ~~~  103 (255)
T PRK14103        101 WVP  103 (255)
T ss_pred             hCC
Confidence            973

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.35  E-value=4.6e-12  Score=114.86  Aligned_cols=81  Identities=22%  Similarity=0.258  Sum_probs=69.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..++..|...|+|+|+|+.|+..++......+. .++.++.+|+.+++++++||+|++.+++|
T Consensus       121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl~  200 (322)
T PRK15068        121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVLY  200 (322)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChhh
Confidence            46789999999999999999999877899999999999876654433322 37999999999988778999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       201 H~  202 (322)
T PRK15068        201 HR  202 (322)
T ss_pred             cc
Confidence            86

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.35  E-value=5.2e-12  Score=114.05  Aligned_cols=77  Identities=22%  Similarity=0.190  Sum_probs=66.9

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEeccCCCcCCCCccEEEEcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g-----~~~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++++..+     ..+++|.++|+.++  +++||+|+|..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~  220 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLD  220 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcC
Confidence            567999999999999999999976 89999999999999999987642     23688999998654  57899999999


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      +++|+
T Consensus       221 vL~H~  225 (315)
T PLN02585        221 VLIHY  225 (315)
T ss_pred             EEEec
Confidence            99885

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.35  E-value=2.3e-12  Score=110.46  Aligned_cols=78  Identities=28%  Similarity=0.371  Sum_probs=67.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|+++....+. .++.+.++|+..  ..++||+|++..++|
T Consensus        62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~fD~v~~~~~l~  138 (230)
T PRK07580         62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLES--LLGRFDTVVCLDVLI  138 (230)
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchh--ccCCcCEEEEcchhh
Confidence            4667999999999999999999876 799999999999999999887776 469999999533  247899999999997


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       139 ~~  140 (230)
T PRK07580        139 HY  140 (230)
T ss_pred             cC
Confidence            75

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.30  E-value=9.9e-12  Score=108.75  Aligned_cols=76  Identities=21%  Similarity=0.300  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..+++. +..+|+|+|+|+.|++.|+++.     .++.++.+|+.++..+++||+|+++.++|
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~  104 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASWQPPQALDLIFANASLQ  104 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhccCCCCCccEEEEccChh
Confidence            46689999999999999999987 3459999999999999999864     46899999998876568999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ++
T Consensus       105 ~~  106 (258)
T PRK01683        105 WL  106 (258)
T ss_pred             hC
Confidence            87

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.30  E-value=2e-11  Score=104.37  Aligned_cols=82  Identities=16%  Similarity=0.148  Sum_probs=70.4

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhcCC--CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~g~--~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      ..++.+|||||||+|.++..+++...  .+|+++|+++++++.|+++++..++.+++++++|..+.... .+||+|++..
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Ii~~~  154 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWEPLAPYDRIYVTA  154 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCcccCCCCEEEEcC
Confidence            35788999999999999999998832  25999999999999999999999988899999999876433 7899999887


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      ...++
T Consensus       155 ~~~~~  159 (215)
T TIGR00080       155 AGPKI  159 (215)
T ss_pred             Ccccc
Confidence            66554

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.30  E-value=2.4e-12  Score=108.56  Aligned_cols=89  Identities=21%  Similarity=0.238  Sum_probs=75.5

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCcc
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ  232 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD  232 (253)
                      .|+..+.. ....+|.|+|||+|..+..|+++ +...++|+|-|++||+.|++++     .+++|..+|+.++..+..+|
T Consensus        21 dLla~Vp~-~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl-----p~~~f~~aDl~~w~p~~~~d   94 (257)
T COG4106          21 DLLARVPL-ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL-----PDATFEEADLRTWKPEQPTD   94 (257)
T ss_pred             HHHhhCCc-cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC-----CCCceecccHhhcCCCCccc
Confidence            34433333 35679999999999999999998 5559999999999999998763     58999999999998889999


Q ss_pred             EEEEccccceeccCCC
Q 025428          233 LVMDKGTLDAIGLHPD  248 (253)
Q Consensus       233 ~Vi~~~~l~~i~~~pd  248 (253)
                      ++++|.+||++.-|++
T Consensus        95 llfaNAvlqWlpdH~~  110 (257)
T COG4106          95 LLFANAVLQWLPDHPE  110 (257)
T ss_pred             hhhhhhhhhhccccHH
Confidence            9999999999977764

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=99.29  E-value=5.4e-12  Score=108.40  Aligned_cols=98  Identities=30%  Similarity=0.330  Sum_probs=73.6

Q ss_pred             cccchHHHHhcc--CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh-------c-----CCCce
Q 025428          150 DLKSEPVEENDK--YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------D-----GFSCI  215 (253)
Q Consensus       150 ~~~~~l~~~l~~--~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~-------~-----g~~~i  215 (253)
                      .+.+.|.+.+..  ..++.+||..|||.|.-+..|+.+|+ +|+|+|+|+.+|+.+.+....       .     ...+|
T Consensus        21 ~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i   99 (218)
T PF05724_consen   21 EPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRI   99 (218)
T ss_dssp             TSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSE
T ss_pred             CCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCce
Confidence            334445554444  34667999999999999999999998 999999999999998554321       0     11258


Q ss_pred             EEEEeccCCCcCC--CCccEEEEccccceeccCCCCC
Q 025428          216 KFLVDDVLDTKLE--RQFQLVMDKGTLDAIGLHPDGP  250 (253)
Q Consensus       216 ~~~~~D~~~~~~~--~~fD~Vi~~~~l~~i~~~pd~~  250 (253)
                      +++++|+.+++..  ++||+|+....|++|  +|+.|
T Consensus       100 ~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al--pp~~R  134 (218)
T PF05724_consen  100 TIYCGDFFELPPEDVGKFDLIYDRTFLCAL--PPEMR  134 (218)
T ss_dssp             EEEES-TTTGGGSCHHSEEEEEECSSTTTS---GGGH
T ss_pred             EEEEcccccCChhhcCCceEEEEecccccC--CHHHH
Confidence            9999999998764  689999999999998  56543

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.29  E-value=1.7e-11  Score=108.24  Aligned_cols=82  Identities=17%  Similarity=0.379  Sum_probs=71.8

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      +.++.+|||+|||+|..+..+++. +. .+|+|+|+|+.|++.|+++....++.+++++++|+.+++++ ++||+|+++.
T Consensus        75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~  154 (272)
T PRK11873         75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC  154 (272)
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence            357889999999999988877765 43 27999999999999999999888888899999999998865 7899999999


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      ++|++
T Consensus       155 v~~~~  159 (272)
T PRK11873        155 VINLS  159 (272)
T ss_pred             cccCC
Confidence            88875

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.29  E-value=2.6e-11  Score=100.67  Aligned_cols=78  Identities=19%  Similarity=0.296  Sum_probs=69.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      .++.+|||+|||+|.++..++..+. +|+++|+|+.|++.++++++.++. +++++++|+.+.. .++||+|+++..+++
T Consensus        18 ~~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-~~~fD~Vi~n~p~~~   94 (179)
T TIGR00537        18 LKPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-RGKFDVILFNPPYLP   94 (179)
T ss_pred             cCCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc-CCcccEEEECCCCCC
Confidence            4567899999999999999999876 899999999999999999988876 7899999987754 468999999998876


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus        95 ~   95 (179)
T TIGR00537        95 L   95 (179)
T ss_pred             C
Confidence            6

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.29  E-value=3.3e-11  Score=103.04  Aligned_cols=82  Identities=17%  Similarity=0.232  Sum_probs=70.9

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      ..++.+|||||||+|.++..+++. +. .+|+++|+++++++.++++++..++.+++++++|......+ ++||+|++..
T Consensus        74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~~~~~fD~I~~~~  153 (212)
T PRK13942         74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYEENAPYDRIYVTA  153 (212)
T ss_pred             CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCcCCCcCEEEECC
Confidence            357889999999999999999887 32 48999999999999999999999988899999999876544 7899999987


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      .++.+
T Consensus       154 ~~~~~  158 (212)
T PRK13942        154 AGPDI  158 (212)
T ss_pred             Ccccc
Confidence            66554

>PRK06202 hypothetical protein; Provisional

Probab=99.28  E-value=1.7e-11  Score=105.79  Aligned_cols=78  Identities=24%  Similarity=0.365  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc----CC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ----GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~----g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~  236 (253)
                      .++.+|||+|||+|.++..+++.    |. .+|+|+|+|++|++.|+++....   ++++.+++...++.+ ++||+|++
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~~~~~fD~V~~  135 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVAEGERFDVVTS  135 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccccCCCccEEEE
Confidence            45679999999999999888753    32 38999999999999999876433   456777766665544 79999999


Q ss_pred             cccccee
Q 025428          237 KGTLDAI  243 (253)
Q Consensus       237 ~~~l~~i  243 (253)
                      +.+|||+
T Consensus       136 ~~~lhh~  142 (232)
T PRK06202        136 NHFLHHL  142 (232)
T ss_pred             CCeeecC
Confidence            9999998

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.28  E-value=1.4e-11  Score=107.40  Aligned_cols=74  Identities=22%  Similarity=0.284  Sum_probs=64.7

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~  242 (253)
                      +..+|||+|||+|.++..++..+. +|+++|+|+.|++.++++..     .+.++++|+..++++ ++||+|+++.++|+
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~  115 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA-----ADHYLAGDIESLPLATATFDLAWSNLAVQW  115 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence            467999999999999999998865 99999999999999998742     357899999998875 78999999999987


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus       116 ~  116 (251)
T PRK10258        116 C  116 (251)
T ss_pred             c
Confidence            5

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.28  E-value=1.9e-11  Score=107.85  Aligned_cols=79  Identities=23%  Similarity=0.358  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|..+..++.....+|+|+|+|+.|++.|+++...  ..++.++++|+.+.+++ ++||+|++..+++
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~  128 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDFPENTFDMIYSRDAIL  128 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCCCCCCeEEEEEhhhHH
Confidence            57789999999999999999876223999999999999999998654  24799999999988775 7999999988887


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       129 h~  130 (263)
T PTZ00098        129 HL  130 (263)
T ss_pred             hC
Confidence            76

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=3.4e-11  Score=99.88  Aligned_cols=84  Identities=29%  Similarity=0.417  Sum_probs=72.5

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      ...+.+|+|+|||||.+++..+-.|+..|+|+|+++++++.+++|+.+ +..++.|+++|+.++  ...||.|++|..|-
T Consensus        43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~--~~~~dtvimNPPFG  119 (198)
T COG2263          43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDF--RGKFDTVIMNPPFG  119 (198)
T ss_pred             CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhc--CCccceEEECCCCc
Confidence            357789999999999999999999999999999999999999999988 334899999999885  46789999988876


Q ss_pred             eeccCCC
Q 025428          242 AIGLHPD  248 (253)
Q Consensus       242 ~i~~~pd  248 (253)
                      .-.-|+|
T Consensus       120 ~~~rhaD  126 (198)
T COG2263         120 SQRRHAD  126 (198)
T ss_pred             cccccCC
Confidence            6544444

>TIGR00740 methyltransferase, putative

Probab=99.27  E-value=2.2e-11  Score=105.63  Aligned_cols=80  Identities=15%  Similarity=0.214  Sum_probs=68.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~---g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      .++.+|||+|||+|.++..++++   +..+++|+|+|+.|++.|++++...+.. +++++++|+.+++++ .+|+|+++.
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~  130 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF  130 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence            35679999999999999999875   2348999999999999999998765543 699999999988765 589999999


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      ++||+
T Consensus       131 ~l~~~  135 (239)
T TIGR00740       131 TLQFL  135 (239)
T ss_pred             chhhC
Confidence            99987

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.27  E-value=4.3e-11  Score=101.72  Aligned_cols=81  Identities=15%  Similarity=0.198  Sum_probs=69.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      .++.+|||+|||+|.++..+++. + ..+|+++|++++|++.|+++++..++. +++++++|+.+.... ++||+|++..
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii~~~  150 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHAPFDAIIVTA  150 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCCCccEEEEcc
Confidence            46789999999999999999876 2 348999999999999999999988876 599999999875433 7899999998


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      +++++
T Consensus       151 ~~~~~  155 (205)
T PRK13944        151 AASTI  155 (205)
T ss_pred             Ccchh
Confidence            87765

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.27  E-value=3.3e-11  Score=100.67  Aligned_cols=78  Identities=19%  Similarity=0.236  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.++++++..++.+++++++|+.. .++++||+|++.+..+
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~~~~~~D~v~~~~~~~  108 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-ELPGKADAIFIGGSGG  108 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-hcCcCCCEEEECCCcc
Confidence            467899999999999999999873 34899999999999999999988888789999999853 3457899999876543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.27  E-value=2.4e-11  Score=115.49  Aligned_cols=89  Identities=24%  Similarity=0.269  Sum_probs=72.8

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCc
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQF  231 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~f  231 (253)
                      ..+++.+. ..++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++....+ .+++|+++|+.+.+++ ++|
T Consensus       256 e~l~~~~~-~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~~~~~f  333 (475)
T PLN02336        256 KEFVDKLD-LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTYPDNSF  333 (475)
T ss_pred             HHHHHhcC-CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCCCCCCE
Confidence            34444443 35677999999999999999998733389999999999999998875333 2699999999988765 789


Q ss_pred             cEEEEcccccee
Q 025428          232 QLVMDKGTLDAI  243 (253)
Q Consensus       232 D~Vi~~~~l~~i  243 (253)
                      |+|++..+++|+
T Consensus       334 D~I~s~~~l~h~  345 (475)
T PLN02336        334 DVIYSRDTILHI  345 (475)
T ss_pred             EEEEECCccccc
Confidence            999999999987

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=99.27  E-value=2.1e-11  Score=108.15  Aligned_cols=79  Identities=24%  Similarity=0.376  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||.|.++..++++ |+ +|+|+.+|++..+.++++++..|+. ++++.++|..+++  .+||.|++.+++
T Consensus        61 ~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~--~~fD~IvSi~~~  137 (273)
T PF02353_consen   61 KPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP--GKFDRIVSIEMF  137 (273)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-SEEEEESEG
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC--CCCCEEEEEech
Confidence            68899999999999999999999 77 9999999999999999999999987 4999999998764  499999999999


Q ss_pred             ceec
Q 025428          241 DAIG  244 (253)
Q Consensus       241 ~~i~  244 (253)
                      +|++
T Consensus       138 Ehvg  141 (273)
T PF02353_consen  138 EHVG  141 (273)
T ss_dssp             GGTC
T ss_pred             hhcC
Confidence            9984

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>TIGR00452 methyltransferase, putative

Probab=99.26  E-value=2.1e-11  Score=110.04  Aligned_cols=81  Identities=17%  Similarity=0.168  Sum_probs=67.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g-~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++++|||||||+|.++..++..|+..|+|+|.|+.|+..++...+..+ ..++.+..+++.+++...+||+|++.++|+
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~V~s~gvL~  199 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDTVFSMGVLY  199 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCEEEEcchhh
Confidence            5678999999999999999999887789999999999987654322211 236889999998887667899999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       200 H~  201 (314)
T TIGR00452       200 HR  201 (314)
T ss_pred             cc
Confidence            97

Known examples to date are restricted to the proteobacteria.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.26  E-value=4.3e-12  Score=109.89  Aligned_cols=77  Identities=27%  Similarity=0.471  Sum_probs=64.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-----C-ceEEEEeccCCCcCCCCccEEEEc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-----S-CIKFLVDDVLDTKLERQFQLVMDK  237 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-----~-~i~~~~~D~~~~~~~~~fD~Vi~~  237 (253)
                      -+.+|||+|||+|.+++.|++.|+ .|+|||+++.||+.|++.....-.     . ++++.+.+++..  .+.||+|+|.
T Consensus        89 ~g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~--~~~fDaVvcs  165 (282)
T KOG1270|consen   89 LGMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL--TGKFDAVVCS  165 (282)
T ss_pred             CCceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc--ccccceeeeH
Confidence            457899999999999999999986 999999999999999998433221     1 366777777765  3569999999


Q ss_pred             ccccee
Q 025428          238 GTLDAI  243 (253)
Q Consensus       238 ~~l~~i  243 (253)
                      .+++|+
T Consensus       166 evleHV  171 (282)
T KOG1270|consen  166 EVLEHV  171 (282)
T ss_pred             HHHHHH
Confidence            999998

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.25  E-value=1.8e-11  Score=102.45  Aligned_cols=78  Identities=22%  Similarity=0.294  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      ..-.++||+|||+|.++..|+.+ +.+++++|+|+.+|+.|++++..  .++|+|+++|+.+..++++||+|++..++++
T Consensus        42 ~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~P~~~FDLIV~SEVlYY  118 (201)
T PF05401_consen   42 RRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFWPEGRFDLIVLSEVLYY  118 (201)
T ss_dssp             SSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT---SS-EEEEEEES-GGG
T ss_pred             cccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCCCCCCeeEEEEehHhHc
Confidence            34568999999999999999999 67999999999999999999864  4699999999999877799999999999999


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus       119 L  119 (201)
T PF05401_consen  119 L  119 (201)
T ss_dssp             S
T ss_pred             C
Confidence            8

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.25  E-value=2.5e-11  Score=103.93  Aligned_cols=78  Identities=22%  Similarity=0.328  Sum_probs=69.1

Q ss_pred             CEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccccee
Q 025428          166 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAI  243 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~i  243 (253)
                      ++|||||||+|.++..+++.. ..+|+|+|+|+++++.+++++...|+. +++++++|+...+++++||+|++..++||+
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~   80 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI   80 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence            379999999999999999873 348999999999999999999888775 599999999777667899999999999987

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=99.25  E-value=4e-11  Score=110.66  Aligned_cols=93  Identities=15%  Similarity=0.122  Sum_probs=75.3

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCC---CceEEEEeccCCC
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDT  225 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~---~~i~~~~~D~~~~  225 (253)
                      .-++.+++.+... ...+|||+|||+|.++..+++++ ..+|+++|+|+.|++.|+++++.++.   .+++++.+|+...
T Consensus       215 ~GtrllL~~lp~~-~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~  293 (378)
T PRK15001        215 IGARFFMQHLPEN-LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG  293 (378)
T ss_pred             hHHHHHHHhCCcc-cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence            3356666666543 34699999999999999999873 34999999999999999999987764   3689999998765


Q ss_pred             cCCCCccEEEEcccccee
Q 025428          226 KLERQFQLVMDKGTLDAI  243 (253)
Q Consensus       226 ~~~~~fD~Vi~~~~l~~i  243 (253)
                      ..+++||+|+++..+|..
T Consensus       294 ~~~~~fDlIlsNPPfh~~  311 (378)
T PRK15001        294 VEPFRFNAVLCNPPFHQQ  311 (378)
T ss_pred             CCCCCEEEEEECcCcccC
Confidence            334689999999998865

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.25  E-value=6.4e-11  Score=91.24  Aligned_cols=79  Identities=20%  Similarity=0.202  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CCCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++++..++.+++++.+|+....  ..++||+|++.+.
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~   97 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS   97 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence            35679999999999999999987 33589999999999999999998888878999999987532  2378999998765


Q ss_pred             cc
Q 025428          240 LD  241 (253)
Q Consensus       240 l~  241 (253)
                      .+
T Consensus        98 ~~   99 (124)
T TIGR02469        98 GG   99 (124)
T ss_pred             ch
Confidence            43

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=99.24  E-value=2.5e-11  Score=105.38  Aligned_cols=93  Identities=20%  Similarity=0.255  Sum_probs=78.3

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC--
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE--  228 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~--  228 (253)
                      ..|+..+.......+|||+|||+|.+++.++.+ ...+++|||++++|.+.|+++.+.+++. +|+++++|+.++...  
T Consensus        33 aiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~  112 (248)
T COG4123          33 AILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALV  112 (248)
T ss_pred             HHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhccc
Confidence            344555555556889999999999999999998 5469999999999999999999999887 699999999998642  


Q ss_pred             -CCccEEEEccccceecc
Q 025428          229 -RQFQLVMDKGTLDAIGL  245 (253)
Q Consensus       229 -~~fD~Vi~~~~l~~i~~  245 (253)
                       .+||+|+||..+....-
T Consensus       113 ~~~fD~Ii~NPPyf~~~~  130 (248)
T COG4123         113 FASFDLIICNPPYFKQGS  130 (248)
T ss_pred             ccccCEEEeCCCCCCCcc
Confidence             57999999998876543

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=99.24  E-value=2.9e-11  Score=104.19  Aligned_cols=83  Identities=20%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH------------hcCCCceEEEEeccCCCcC----
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN------------RDGFSCIKFLVDDVLDTKL----  227 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~------------~~g~~~i~~~~~D~~~~~~----  227 (253)
                      ++.+||..|||.|.-+..|+.+|+ +|+|+|+|+.+|+.+.+...            ...-.+|+++++|+.+++.    
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~  121 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANN  121 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCccccc
Confidence            457999999999999999999999 89999999999999866321            0111379999999999864    


Q ss_pred             CCCccEEEEccccceeccCCCC
Q 025428          228 ERQFQLVMDKGTLDAIGLHPDG  249 (253)
Q Consensus       228 ~~~fD~Vi~~~~l~~i~~~pd~  249 (253)
                      .++||+|+...+|+++  +|+.
T Consensus       122 ~~~fD~VyDra~~~Al--pp~~  141 (226)
T PRK13256        122 LPVFDIWYDRGAYIAL--PNDL  141 (226)
T ss_pred             cCCcCeeeeehhHhcC--CHHH
Confidence            1689999999999998  5543

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.23  E-value=6.9e-11  Score=105.41  Aligned_cols=76  Identities=21%  Similarity=0.354  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      +..+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|+++++.+++. +++++++|+.+...+++||+|+++..
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPP  198 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPP  198 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCC
Confidence            45799999999999999999873 348999999999999999999999885 69999999876433468999999753

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=99.23  E-value=4.8e-11  Score=106.22  Aligned_cols=73  Identities=32%  Similarity=0.586  Sum_probs=63.7

Q ss_pred             EEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          167 SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      +|||+|||+|.+++.++.... .+|+|+|+|+.+++.|++|++.+|+.++.++++|+.+. ..++||+|++|...
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~-~~~~fDlIVsNPPY  186 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEP-LRGKFDLIVSNPPY  186 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeecccc-cCCceeEEEeCCCC
Confidence            799999999999999999843 39999999999999999999999986777888887764 34599999998754

>PRK14967 putative methyltransferase; Provisional

Probab=99.23  E-value=5.5e-11  Score=102.20  Aligned_cols=78  Identities=26%  Similarity=0.235  Sum_probs=67.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++.+..+++++|+|+.+++.++++++.+++ ++.++++|+.+....++||+|+++..+.
T Consensus        35 ~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~~~~~fD~Vi~npPy~  112 (223)
T PRK14967         35 GPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAVEFRPFDVVVSNPPYV  112 (223)
T ss_pred             CCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhccCCCeeEEEECCCCC
Confidence            45689999999999999999988766999999999999999999988876 6899999998753347899999986543

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.23  E-value=3.8e-11  Score=101.85  Aligned_cols=77  Identities=18%  Similarity=0.255  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecc-CCCc--C-CCCccEEEEcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV-LDTK--L-ERQFQLVMDKG  238 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~-~~~~--~-~~~fD~Vi~~~  238 (253)
                      .+.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++++..++.+++++++|+ ..++  + +++||+|+++.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~  119 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF  119 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence            5679999999999999999887 3348999999999999999999888888899999999 6554  4 47899999865


Q ss_pred             cc
Q 025428          239 TL  240 (253)
Q Consensus       239 ~l  240 (253)
                      ..
T Consensus       120 ~~  121 (202)
T PRK00121        120 PD  121 (202)
T ss_pred             CC
Confidence            43

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.22  E-value=3.5e-11  Score=108.78  Aligned_cols=100  Identities=20%  Similarity=0.235  Sum_probs=77.4

Q ss_pred             eeecCCCcCCccccccchHHHHhccC---CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC
Q 025428          137 ISISQGHMLNHVEDLKSEPVEENDKY---LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS  213 (253)
Q Consensus       137 ~~i~~~~~~~~~~~~~~~l~~~l~~~---~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~  213 (253)
                      +.+.+....+....+...+.+.+...   .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++++.+++.
T Consensus       143 ~~~~~~sF~Q~n~~~~~~l~~~v~~~l~~~~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~  221 (315)
T PRK03522        143 LFIRPQSFFQTNPAVAAQLYATARDWVRELPPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLT  221 (315)
T ss_pred             EEECCCeeeecCHHHHHHHHHHHHHHHHhcCCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCC
Confidence            44555555554444444444432221   356899999999999999999986 59999999999999999999999998


Q ss_pred             ceEEEEeccCCCcC--CCCccEEEEc
Q 025428          214 CIKFLVDDVLDTKL--ERQFQLVMDK  237 (253)
Q Consensus       214 ~i~~~~~D~~~~~~--~~~fD~Vi~~  237 (253)
                      +++|+++|+.++..  .++||+|+++
T Consensus       222 ~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        222 NVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             ceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            89999999987642  3579999986

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=99.22  E-value=1e-10  Score=99.62  Aligned_cols=81  Identities=17%  Similarity=0.126  Sum_probs=70.0

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      ..++.+|||+|||+|.++..+++.+ .+++++|+++++++.+++++++.++.+++++++|..+.... ++||+|++...+
T Consensus        76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~I~~~~~~  154 (212)
T PRK00312         76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWPAYAPFDRILVTAAA  154 (212)
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCCcCCCcCEEEEccCc
Confidence            3577899999999999999888884 48999999999999999999998988899999998765333 789999998776


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +++
T Consensus       155 ~~~  157 (212)
T PRK00312        155 PEI  157 (212)
T ss_pred             hhh
Confidence            654

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.22  E-value=9.2e-11  Score=108.93  Aligned_cols=101  Identities=18%  Similarity=0.220  Sum_probs=75.5

Q ss_pred             ceeecCCC-cCCccccccchHHHHhc-cCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428          136 CISISQGH-MLNHVEDLKSEPVEEND-KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF  212 (253)
Q Consensus       136 ~~~i~~~~-~~~~~~~~~~~l~~~l~-~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~  212 (253)
                      .+.+.++. +|.   ..+..+++.+. ...++.+|||+|||+|.++..++.. +..+|+|+|+|+.|++.|++|++.++.
T Consensus       224 ~f~V~p~vLIPR---peTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~  300 (423)
T PRK14966        224 RFAVNPNVLIPR---PETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGA  300 (423)
T ss_pred             EEEeCCCccCCC---ccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            34455554 333   22333444433 3345679999999999999999875 445899999999999999999988876


Q ss_pred             CceEEEEeccCCCcC--CCCccEEEEcccc
Q 025428          213 SCIKFLVDDVLDTKL--ERQFQLVMDKGTL  240 (253)
Q Consensus       213 ~~i~~~~~D~~~~~~--~~~fD~Vi~~~~l  240 (253)
                       +++++++|+.+...  .++||+|++|...
T Consensus       301 -rV~fi~gDl~e~~l~~~~~FDLIVSNPPY  329 (423)
T PRK14966        301 -RVEFAHGSWFDTDMPSEGKWDIIVSNPPY  329 (423)
T ss_pred             -cEEEEEcchhccccccCCCccEEEECCCC
Confidence             89999999976533  3689999998753

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=99.21  E-value=5.6e-11  Score=100.72  Aligned_cols=88  Identities=10%  Similarity=-0.041  Sum_probs=71.7

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CCCC
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQ  230 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~~~  230 (253)
                      ..++..+.....+.+|||+|||+|.+++.++.+++.+|+++|+++.+++.+++|++.+++.+++++++|+.+..  ..++
T Consensus        42 e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~  121 (199)
T PRK10909         42 ETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTP  121 (199)
T ss_pred             HHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCC
Confidence            34455554434677999999999999997666667799999999999999999999999888999999997643  1357


Q ss_pred             ccEEEEcccc
Q 025428          231 FQLVMDKGTL  240 (253)
Q Consensus       231 fD~Vi~~~~l  240 (253)
                      ||+|+++..+
T Consensus       122 fDlV~~DPPy  131 (199)
T PRK10909        122 HNVVFVDPPF  131 (199)
T ss_pred             ceEEEECCCC
Confidence            9999997764

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.21  E-value=3.5e-11  Score=92.34  Aligned_cols=79  Identities=29%  Similarity=0.485  Sum_probs=67.4

Q ss_pred             CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc--C-CCCccEEEEcccc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--L-ERQFQLVMDKGTL  240 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~--~-~~~fD~Vi~~~~l  240 (253)
                      +.+|||+|||+|.++..+++.+..+++|+|+++..++.++.++...++. +++++++|+.+..  + .++||+|+++..+
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~   80 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY   80 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred             CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence            3589999999999999999997459999999999999999999998874 7999999998876  3 4899999999888


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      ...
T Consensus        81 ~~~   83 (117)
T PF13659_consen   81 GPR   83 (117)
T ss_dssp             TSB
T ss_pred             ccc
Confidence            643

...

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.20  E-value=6.8e-11  Score=99.41  Aligned_cols=74  Identities=23%  Similarity=0.355  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC-Cc-C-CCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TK-L-ERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~-~~-~-~~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||+|.++..+++.....++|+|+|++|++.++++       +++++++|+.+ ++ + +++||+|+++.+
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~   84 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-------GVNVIQGDLDEGLEAFPDKSFDYVILSQT   84 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence            45679999999999999999876444899999999999988652       46889999876 32 4 378999999999


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      +||+
T Consensus        85 l~~~   88 (194)
T TIGR02081        85 LQAT   88 (194)
T ss_pred             hHcC
Confidence            9987

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.20  E-value=1.8e-12  Score=96.94  Aligned_cols=75  Identities=33%  Similarity=0.408  Sum_probs=49.8

Q ss_pred             EEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC---cCCCCccEEEEcccccee
Q 025428          169 LDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KLERQFQLVMDKGTLDAI  243 (253)
Q Consensus       169 LDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~---~~~~~fD~Vi~~~~l~~i  243 (253)
                      ||||||+|.++..++.. ...+++|+|+|+.|++.+++++...+..+......+..+.   ...++||+|++..+|||+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l   79 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL   79 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS--
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh
Confidence            79999999999999988 3349999999999999999998877654444544444443   223699999999999998

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=99.19  E-value=1e-10  Score=103.76  Aligned_cols=92  Identities=23%  Similarity=0.284  Sum_probs=77.4

Q ss_pred             ccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC
Q 025428          149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (253)
Q Consensus       149 ~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~  227 (253)
                      +.-++.|++.+..... .+|||+|||.|.++..+++.. ..+++.+|+|..+|+.+|+|++.|++++..+...|..+...
T Consensus       144 D~GS~lLl~~l~~~~~-~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~  222 (300)
T COG2813         144 DKGSRLLLETLPPDLG-GKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVE  222 (300)
T ss_pred             ChHHHHHHHhCCccCC-CcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccc
Confidence            4447777777777544 499999999999999999993 45999999999999999999999999877778888876544


Q ss_pred             CCCccEEEEccccce
Q 025428          228 ERQFQLVMDKGTLDA  242 (253)
Q Consensus       228 ~~~fD~Vi~~~~l~~  242 (253)
                       ++||+|++|..||.
T Consensus       223 -~kfd~IisNPPfh~  236 (300)
T COG2813         223 -GKFDLIISNPPFHA  236 (300)
T ss_pred             -ccccEEEeCCCccC
Confidence             49999999999884

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.18  E-value=2e-10  Score=102.30  Aligned_cols=74  Identities=20%  Similarity=0.439  Sum_probs=64.0

Q ss_pred             CEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEccc
Q 025428          166 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      .+|||+|||+|.++..++... ..+|+|+|+|+.+++.|++|++.+++.+ ++++++|+.+....++||+|+++..
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPP  191 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPP  191 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCC
Confidence            689999999999999999873 2489999999999999999999988864 9999999987432358999999753

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.18  E-value=8.5e-11  Score=100.62  Aligned_cols=76  Identities=28%  Similarity=0.384  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      ...+|||+|||+|.++..+++.+. .+++++|+++.+++.++++..    .++.++++|+.+.+++ ++||+|+++.++|
T Consensus        34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l~  109 (240)
T TIGR02072        34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPLEDSSFDLIVSNLALQ  109 (240)
T ss_pred             CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCCCCCceeEEEEhhhhh
Confidence            447899999999999999998853 378999999999999998754    3789999999998764 8899999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       110 ~~  111 (240)
T TIGR02072       110 WC  111 (240)
T ss_pred             hc
Confidence            87

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=99.17  E-value=2.8e-10  Score=103.98  Aligned_cols=102  Identities=17%  Similarity=0.236  Sum_probs=78.2

Q ss_pred             eecCCCcCCcc-ccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCce
Q 025428          138 SISQGHMLNHV-EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCI  215 (253)
Q Consensus       138 ~i~~~~~~~~~-~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i  215 (253)
                      ...++.+.... +..+..+++.+... ...+|||+|||+|.++..+++++ ..+|+++|+|+.|++.++++++.+++ ..
T Consensus       170 ~~~pgvFs~~~lD~gt~lLl~~l~~~-~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l-~~  247 (342)
T PRK09489        170 KTLPGVFSRDGLDVGSQLLLSTLTPH-TKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGL-EG  247 (342)
T ss_pred             EeCCCCCCCCCCCHHHHHHHHhcccc-CCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCC-CC
Confidence            34444433322 23356666666553 34589999999999999999883 34899999999999999999999887 46


Q ss_pred             EEEEeccCCCcCCCCccEEEEccccce
Q 025428          216 KFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       216 ~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      +++.+|+... .+++||+|+++..+|.
T Consensus       248 ~~~~~D~~~~-~~~~fDlIvsNPPFH~  273 (342)
T PRK09489        248 EVFASNVFSD-IKGRFDMIISNPPFHD  273 (342)
T ss_pred             EEEEcccccc-cCCCccEEEECCCccC
Confidence            7888888763 4678999999999986

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.16  E-value=1.8e-10  Score=103.80  Aligned_cols=73  Identities=22%  Similarity=0.382  Sum_probs=63.7

Q ss_pred             CEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcc
Q 025428          166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      .+|||+|||+|.++..++.. +..+|+++|+|+.+++.|+++++.+++. +++++++|+.+...+++||+|+++.
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNP  209 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNP  209 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECC
Confidence            68999999999999999987 3348999999999999999999998875 5999999987643346899999985

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.16  E-value=1.2e-10  Score=110.06  Aligned_cols=102  Identities=19%  Similarity=0.232  Sum_probs=78.0

Q ss_pred             ceeecCCCcCCccccccchHHHHhcc---CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428          136 CISISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF  212 (253)
Q Consensus       136 ~~~i~~~~~~~~~~~~~~~l~~~l~~---~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~  212 (253)
                      .+.+.++.+..........+.+.+..   ..++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++++.+++
T Consensus       266 ~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~  344 (443)
T PRK13168        266 RLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGL  344 (443)
T ss_pred             EEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCC
Confidence            44555555555444444444443332   2466799999999999999999985 5999999999999999999999998


Q ss_pred             CceEEEEeccCCCc----C-CCCccEEEEcc
Q 025428          213 SCIKFLVDDVLDTK----L-ERQFQLVMDKG  238 (253)
Q Consensus       213 ~~i~~~~~D~~~~~----~-~~~fD~Vi~~~  238 (253)
                      .+++++++|+.+..    + +++||+|+++.
T Consensus       345 ~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~dP  375 (443)
T PRK13168        345 DNVTFYHANLEEDFTDQPWALGGFDKVLLDP  375 (443)
T ss_pred             CceEEEEeChHHhhhhhhhhcCCCCEEEECc
Confidence            88999999997532    2 36799999863

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.16  E-value=2.3e-10  Score=94.18  Aligned_cols=76  Identities=20%  Similarity=0.222  Sum_probs=66.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++++ .+++++|+++.|++.+++++..  ..+++++++|+.+++++ .+||.|+++-.+|
T Consensus        12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~~~~~d~vi~n~Py~   88 (169)
T smart00650       12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLPKLQPYKVVGNLPYN   88 (169)
T ss_pred             CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCccccCCCEEEECCCcc
Confidence            456799999999999999999994 5999999999999999998754  34799999999998766 4699999987665

>PRK06922 hypothetical protein; Provisional

Probab=99.15  E-value=1.4e-10  Score=112.39  Aligned_cols=82  Identities=18%  Similarity=0.431  Sum_probs=69.5

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC-CCccEEEE
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE-RQFQLVMD  236 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~-~~fD~Vi~  236 (253)
                      ...++.+|||+|||+|.++..++.. +..+++|+|+|+.|++.|+++....+. ++.++++|+.+++  ++ ++||+|++
T Consensus       415 d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~fedeSFDvVVs  493 (677)
T PRK06922        415 DYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSFEKESVDTIVY  493 (677)
T ss_pred             hhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCccccCCCCEEEEEE
Confidence            3346789999999999999998876 334999999999999999998766553 7889999998876  43 89999999


Q ss_pred             cccccee
Q 025428          237 KGTLDAI  243 (253)
Q Consensus       237 ~~~l~~i  243 (253)
                      +.++|++
T Consensus       494 n~vLH~L  500 (677)
T PRK06922        494 SSILHEL  500 (677)
T ss_pred             chHHHhh
Confidence            9999976

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.15  E-value=1.4e-10  Score=93.22  Aligned_cols=72  Identities=33%  Similarity=0.532  Sum_probs=58.8

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-CCCccEEEEcccc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGTL  240 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-~~~fD~Vi~~~~l  240 (253)
                      ..++.+|||+|||+|.++..+++.|. +++|+|+++.+++.          .++.....+...... +++||+|++..+|
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~~fD~i~~~~~l   88 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPPFPDGSFDLIICNDVL   88 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH----------TTSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhhccccchhhHhhHHHH
Confidence            46788999999999999999999988 99999999999998          234444444444433 4899999999999


Q ss_pred             ceec
Q 025428          241 DAIG  244 (253)
Q Consensus       241 ~~i~  244 (253)
                      ||+.
T Consensus        89 ~~~~   92 (161)
T PF13489_consen   89 EHLP   92 (161)
T ss_dssp             GGSS
T ss_pred             hhcc
Confidence            9984

...

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.15  E-value=1.4e-10  Score=105.56  Aligned_cols=78  Identities=18%  Similarity=0.231  Sum_probs=67.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++. +..+++++|+|++|++.|+++..   ..+++++.+|+.+++++ ++||+|+++.++
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~~~~sFDvVIs~~~L  188 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPFPTDYADRYVSAGSI  188 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence            35679999999999999988876 34589999999999999998754   24688999999998875 789999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      |++
T Consensus       189 ~~~  191 (340)
T PLN02490        189 EYW  191 (340)
T ss_pred             hhC
Confidence            875

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.14  E-value=2.9e-10  Score=103.41  Aligned_cols=79  Identities=18%  Similarity=0.114  Sum_probs=70.1

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT  239 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~  239 (253)
                      ...++.+|||+|||||.++..++..|. +++|+|+++.|++.++.|++..|+.++.++++|+.++++. ++||+|+++..
T Consensus       179 ~~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~~~~~D~Iv~dPP  257 (329)
T TIGR01177       179 RVTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLSSESVDAIATDPP  257 (329)
T ss_pred             CCCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcccCCCCEEEECCC
Confidence            346778999999999999999888765 9999999999999999999999988899999999998864 79999999755


Q ss_pred             c
Q 025428          240 L  240 (253)
Q Consensus       240 l  240 (253)
                      +
T Consensus       258 y  258 (329)
T TIGR01177       258 Y  258 (329)
T ss_pred             C
Confidence            4

This family is found exclusively in the Archaea.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.14  E-value=1.1e-10  Score=97.42  Aligned_cols=74  Identities=26%  Similarity=0.356  Sum_probs=63.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC-CCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE-RQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~-~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||.|.++..|.+....+++|+|++++.+..|.++       .+.++++|+.+-.  ++ ++||.||++++
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-------Gv~Viq~Dld~gL~~f~d~sFD~VIlsqt   84 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-------GVSVIQGDLDEGLADFPDQSFDYVILSQT   84 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-------CCCEEECCHHHhHhhCCCCCccEEehHhH
Confidence            47899999999999999999986344899999999999988875       4679999997743  34 89999999999


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      |.++
T Consensus        85 LQ~~   88 (193)
T PF07021_consen   85 LQAV   88 (193)
T ss_pred             HHhH
Confidence            9987

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.14  E-value=3e-10  Score=98.52  Aligned_cols=78  Identities=29%  Similarity=0.445  Sum_probs=67.4

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .+.+|||+|||+|.++..++.. +..+++|+|+++.+++.+++++...++.+++++++|+.+....++||+|+++..+.
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~npPy~  165 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPLPGGKFDLIVSNPPYI  165 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccCcCCceeEEEECCCCC
Confidence            4469999999999999999987 33489999999999999999999888878999999998743358899999976654

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.12  E-value=1.8e-10  Score=96.98  Aligned_cols=76  Identities=21%  Similarity=0.277  Sum_probs=65.5

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---CC-CCccEEEEcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LE-RQFQLVMDKG  238 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---~~-~~fD~Vi~~~  238 (253)
                      ...+|||||||+|.++..++.. +..+++|+|+++.|++.|++++...++.|++++++|+.+++   ++ +++|.|+++.
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~   95 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF   95 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence            4569999999999999999987 33489999999999999999999888889999999998753   33 5899998865


Q ss_pred             c
Q 025428          239 T  239 (253)
Q Consensus       239 ~  239 (253)
                      .
T Consensus        96 p   96 (194)
T TIGR00091        96 P   96 (194)
T ss_pred             C
Confidence            4

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=99.12  E-value=3.4e-10  Score=96.63  Aligned_cols=91  Identities=22%  Similarity=0.256  Sum_probs=70.9

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCC-cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-  228 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~-~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-  228 (253)
                      ...+++.+. ..++.+|||||||+|+.+..++.. |.. .|+++|+.+..++.|+++++..++.|+.++++|....... 
T Consensus        61 ~a~~l~~L~-l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~~~~  139 (209)
T PF01135_consen   61 VARMLEALD-LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGWPEE  139 (209)
T ss_dssp             HHHHHHHTT-C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTTGGG
T ss_pred             HHHHHHHHh-cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhccccC
Confidence            444555554 478899999999999999999988 432 6999999999999999999999998999999998765433 


Q ss_pred             CCccEEEEcccccee
Q 025428          229 RQFQLVMDKGTLDAI  243 (253)
Q Consensus       229 ~~fD~Vi~~~~l~~i  243 (253)
                      .+||.|++......+
T Consensus       140 apfD~I~v~~a~~~i  154 (209)
T PF01135_consen  140 APFDRIIVTAAVPEI  154 (209)
T ss_dssp             -SEEEEEESSBBSS-
T ss_pred             CCcCEEEEeeccchH
Confidence            789999998776544

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.11  E-value=4.8e-10  Score=96.09  Aligned_cols=80  Identities=24%  Similarity=0.332  Sum_probs=69.4

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGT  239 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~~  239 (253)
                      ++.+|||+|||+|.++..++..+  ..+++++|+++.+++.+++++..+++. ++.++.+|+.+.+++ ++||+|++..+
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~  130 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG  130 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence            56799999999999999999885  369999999999999999998765543 689999999987764 78999999888


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      +|++
T Consensus       131 l~~~  134 (239)
T PRK00216        131 LRNV  134 (239)
T ss_pred             cccC
Confidence            8865

>PRK14968 putative methyltransferase; Provisional

Probab=99.11  E-value=6.2e-10  Score=92.15  Aligned_cols=78  Identities=21%  Similarity=0.344  Sum_probs=67.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc--eEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~--i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .++.+|||+|||+|.++..++..+ .+++|+|+|+++++.+++++..+++.+  +.++++|+.+...+++||+|+++..+
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~  100 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPY  100 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCc
Confidence            466799999999999999999995 599999999999999999998887754  89999998875444689999987665


Q ss_pred             c
Q 025428          241 D  241 (253)
Q Consensus       241 ~  241 (253)
                      .
T Consensus       101 ~  101 (188)
T PRK14968        101 L  101 (188)
T ss_pred             C
Confidence            4

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=99.11  E-value=4.3e-10  Score=107.83  Aligned_cols=76  Identities=21%  Similarity=0.341  Sum_probs=64.6

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      ..+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++|++.+++. +++++++|+.+....++||+|+++...
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsNPPY  216 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSNPPY  216 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEECCCC
Confidence            468999999999999999876 4459999999999999999999988875 599999998764334689999997643

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.11  E-value=2.4e-10  Score=105.70  Aligned_cols=104  Identities=16%  Similarity=0.180  Sum_probs=83.8

Q ss_pred             cceeecCCCcCCccccccchHHHHhccC---CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC
Q 025428          135 LCISISQGHMLNHVEDLKSEPVEENDKY---LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  211 (253)
Q Consensus       135 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~---~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g  211 (253)
                      ..+.+.+..+++....+...+...+...   .++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|++|++.++
T Consensus       201 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~l~~~~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~  279 (374)
T TIGR02085       201 VPLVIRPQSFFQTNPKVAAQLYATARQWVREIPVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLG  279 (374)
T ss_pred             EEEEECCCccccCCHHHHHHHHHHHHHHHHhcCCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcC
Confidence            3466777777777777777776654432   356799999999999999999886 599999999999999999999999


Q ss_pred             CCceEEEEeccCCCcC--CCCccEEEEccc
Q 025428          212 FSCIKFLVDDVLDTKL--ERQFQLVMDKGT  239 (253)
Q Consensus       212 ~~~i~~~~~D~~~~~~--~~~fD~Vi~~~~  239 (253)
                      +.+++|+++|+.+...  .++||+|+.+..
T Consensus       280 ~~~~~~~~~d~~~~~~~~~~~~D~vi~DPP  309 (374)
T TIGR02085       280 LDNLSFAALDSAKFATAQMSAPELVLVNPP  309 (374)
T ss_pred             CCcEEEEECCHHHHHHhcCCCCCEEEECCC
Confidence            8889999999976532  256999988643

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.11  E-value=6.9e-10  Score=92.17  Aligned_cols=79  Identities=19%  Similarity=0.269  Sum_probs=69.4

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      .+.++.+++|||||||.++..++..+ ..+|+++|.++++++..++|+++.|++|++++.+++.+...+ .+||.|+..+
T Consensus        31 ~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~daiFIGG  110 (187)
T COG2242          31 RPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSPDAIFIGG  110 (187)
T ss_pred             CCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCCCEEEECC
Confidence            34688899999999999999999553 349999999999999999999999999999999999887544 4799999877


Q ss_pred             c
Q 025428          239 T  239 (253)
Q Consensus       239 ~  239 (253)
                      .
T Consensus       111 g  111 (187)
T COG2242         111 G  111 (187)
T ss_pred             C
Confidence            4

>PRK08317 hypothetical protein; Provisional

Probab=99.09  E-value=8.4e-10  Score=94.24  Aligned_cols=80  Identities=25%  Similarity=0.297  Sum_probs=67.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||+|.++..++...  ..+++|+|+|+.+++.++++.... ..+++++++|+...++. ++||+|++..+
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~-~~~~~~~~~d~~~~~~~~~~~D~v~~~~~   96 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL-GPNVEFVRGDADGLPFPDGSFDAVRSDRV   96 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC-CCceEEEecccccCCCCCCCceEEEEech
Confidence            467899999999999999999872  348999999999999999883322 24799999999887765 78999999999


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      ++++
T Consensus        97 ~~~~  100 (241)
T PRK08317         97 LQHL  100 (241)
T ss_pred             hhcc
Confidence            9886

>TIGR00095 RNA methyltransferase, RsmD family

Probab=99.09  E-value=4.6e-10  Score=94.38  Aligned_cols=97  Identities=11%  Similarity=-0.015  Sum_probs=77.4

Q ss_pred             cCCccccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecc
Q 025428          144 MLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDV  222 (253)
Q Consensus       144 ~~~~~~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~  222 (253)
                      ...+.+.+...+...+.....+.+|||++||+|.+++.++.+|+.+|+++|.++.+++.+++|++.+++. +++++++|+
T Consensus        29 ~rpt~~~vrea~f~~l~~~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~  108 (189)
T TIGR00095        29 TRPTTRVVRELFFNILRPEIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSA  108 (189)
T ss_pred             CCCchHHHHHHHHHHHHHhcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhH
Confidence            3444445566666766655678899999999999999999998889999999999999999999999886 699999999


Q ss_pred             CCCc--C--C-CCccEEEEcccc
Q 025428          223 LDTK--L--E-RQFQLVMDKGTL  240 (253)
Q Consensus       223 ~~~~--~--~-~~fD~Vi~~~~l  240 (253)
                      .+..  .  . ..||+|+....+
T Consensus       109 ~~~l~~~~~~~~~~dvv~~DPPy  131 (189)
T TIGR00095       109 LRALKFLAKKPTFDNVIYLDPPF  131 (189)
T ss_pred             HHHHHHhhccCCCceEEEECcCC
Confidence            6531  1  1 247888876544

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.09  E-value=9e-10  Score=93.23  Aligned_cols=80  Identities=16%  Similarity=0.174  Sum_probs=72.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+||+||||+|+.+..|++... +|+.+|+.++..+.|++|++..|+.|+.++++|...-..+ .+||.|+......
T Consensus        71 ~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~aPyD~I~Vtaaa~  149 (209)
T COG2518          71 KPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWPEEAPYDRIIVTAAAP  149 (209)
T ss_pred             CCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCCCCCCcCEEEEeeccC
Confidence            6889999999999999999999944 9999999999999999999999999999999999886555 8999999877665


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      .+
T Consensus       150 ~v  151 (209)
T COG2518         150 EV  151 (209)
T ss_pred             CC
Confidence            54

>PHA03411 putative methyltransferase; Provisional

Probab=99.08  E-value=6.3e-10  Score=98.12  Aligned_cols=75  Identities=17%  Similarity=0.296  Sum_probs=65.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      ...+|||+|||+|.++..++.+. ..+|+|+|+|+.|++.++++.     .+++++++|+.++...++||+|+++..+++
T Consensus        64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~~~kFDlIIsNPPF~~  138 (279)
T PHA03411         64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFESNEKFDVVISNPPFGK  138 (279)
T ss_pred             cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcccCCCcEEEEcCCccc
Confidence            45799999999999999888762 359999999999999999863     368999999998765678999999999998


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      .
T Consensus       139 l  139 (279)
T PHA03411        139 I  139 (279)
T ss_pred             c
Confidence            5

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.07  E-value=5e-10  Score=94.89  Aligned_cols=78  Identities=26%  Similarity=0.302  Sum_probs=63.5

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC-CcCC-CCccEEEEccccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~-~~~~-~~fD~Vi~~~~l~  241 (253)
                      ...-|||||||+|..+..+...|. ..+|+|||+.||++|.++--     .-.++.+|+-+ +|+. ++||.||+...+.
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~-----egdlil~DMG~GlpfrpGtFDg~ISISAvQ  123 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVEREL-----EGDLILCDMGEGLPFRPGTFDGVISISAVQ  123 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhh-----hcCeeeeecCCCCCCCCCccceEEEeeeee
Confidence            467899999999999999999986 89999999999999997421     13578888865 4554 9999999998887


Q ss_pred             eeccCCC
Q 025428          242 AIGLHPD  248 (253)
Q Consensus       242 ~i~~~pd  248 (253)
                      ++ |+++
T Consensus       124 WL-cnA~  129 (270)
T KOG1541|consen  124 WL-CNAD  129 (270)
T ss_pred             ee-cccC
Confidence            76 5443

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=99.07  E-value=6.9e-10  Score=102.94  Aligned_cols=76  Identities=29%  Similarity=0.464  Sum_probs=66.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..++++ |. +|+|+|+|++|++.|+++++  ++ ++++..+|..++  +++||+|++..+++
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~g~-~V~giDlS~~~l~~A~~~~~--~l-~v~~~~~D~~~l--~~~fD~Ivs~~~~e  239 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHYGV-SVVGVTISAEQQKLAQERCA--GL-PVEIRLQDYRDL--NGQFDRIVSVGMFE  239 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhc--cC-eEEEEECchhhc--CCCCCEEEEeCchh
Confidence            57789999999999999999987 44 89999999999999999874  33 588889998765  57899999999999


Q ss_pred             eec
Q 025428          242 AIG  244 (253)
Q Consensus       242 ~i~  244 (253)
                      |+.
T Consensus       240 hvg  242 (383)
T PRK11705        240 HVG  242 (383)
T ss_pred             hCC
Confidence            873

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.07  E-value=9.3e-10  Score=99.72  Aligned_cols=81  Identities=21%  Similarity=0.274  Sum_probs=68.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC--CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~--~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||+|.++..+++...  .+|+++|++++|++.|+++++..|+.++.++++|+.+...+ ++||+|++...
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~~~g  158 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPEFAPYDVIFVTVG  158 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccccCCccEEEECCc
Confidence            5678999999999999999998732  26999999999999999999999988899999998776544 68999998765


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      ++.+
T Consensus       159 ~~~i  162 (322)
T PRK13943        159 VDEV  162 (322)
T ss_pred             hHHh
Confidence            5443

>PRK07402 precorrin-6B methylase; Provisional

Probab=99.06  E-value=1.1e-09  Score=92.27  Aligned_cols=86  Identities=15%  Similarity=0.204  Sum_probs=65.9

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC-c-
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K-  226 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~-~-  226 (253)
                      ++...++..+ ...++.+|||+|||+|.++..+++. +..+|+++|+|+.|++.++++++..++.+++++++|+.+. . 
T Consensus        27 ~v~~~l~~~l-~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~  105 (196)
T PRK07402         27 EVRLLLISQL-RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ  105 (196)
T ss_pred             HHHHHHHHhc-CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh
Confidence            3333444444 3357789999999999999999865 2359999999999999999999988887899999998653 1 


Q ss_pred             CCCCccEEEE
Q 025428          227 LERQFQLVMD  236 (253)
Q Consensus       227 ~~~~fD~Vi~  236 (253)
                      ....+|.++.
T Consensus       106 ~~~~~d~v~~  115 (196)
T PRK07402        106 LAPAPDRVCI  115 (196)
T ss_pred             CCCCCCEEEE
Confidence            2234566654

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=99.06  E-value=1.1e-09  Score=103.51  Aligned_cols=87  Identities=16%  Similarity=0.069  Sum_probs=72.0

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCC
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER  229 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~  229 (253)
                      .+.+...+....++.+|||+|||+|..+..++..  +..+|+++|+|+.|++.+++++++.|+.+++++++|+..++.++
T Consensus       238 ~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~  317 (445)
T PRK14904        238 TQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEE  317 (445)
T ss_pred             HHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCC
Confidence            3344444455567889999999999999888875  23489999999999999999999999988999999998876557


Q ss_pred             CccEEEEcc
Q 025428          230 QFQLVMDKG  238 (253)
Q Consensus       230 ~fD~Vi~~~  238 (253)
                      +||+|++..
T Consensus       318 ~fD~Vl~D~  326 (445)
T PRK14904        318 QPDAILLDA  326 (445)
T ss_pred             CCCEEEEcC
Confidence            899999753

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=99.06  E-value=5.8e-10  Score=103.77  Aligned_cols=82  Identities=20%  Similarity=0.297  Sum_probs=69.1

Q ss_pred             HhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc--C---CCC
Q 025428          158 ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK--L---ERQ  230 (253)
Q Consensus       158 ~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~--~---~~~  230 (253)
                      .+....++.+|||+|||||.+++.++..|+.+|+++|+|+.+++.|++|++.+++.  +++++++|+.+..  +   .++
T Consensus       214 ~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~  293 (396)
T PRK15128        214 ATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEK  293 (396)
T ss_pred             HHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCC
Confidence            33344567899999999999999887777779999999999999999999999985  6999999998753  1   358


Q ss_pred             ccEEEEccc
Q 025428          231 FQLVMDKGT  239 (253)
Q Consensus       231 fD~Vi~~~~  239 (253)
                      ||+|+++..
T Consensus       294 fDlVilDPP  302 (396)
T PRK15128        294 FDVIVMDPP  302 (396)
T ss_pred             CCEEEECCC
Confidence            999998754

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.05  E-value=5.1e-10  Score=99.43  Aligned_cols=81  Identities=25%  Similarity=0.176  Sum_probs=64.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      ..+++|||||||+|.++..++..|++.|+|+|.+...+-+.+......|... +.++..-+++++..+.||+|+|.|||-
T Consensus       114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~~~~FDtVF~MGVLY  193 (315)
T PF08003_consen  114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPNLGAFDTVFSMGVLY  193 (315)
T ss_pred             cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccccCCcCEEEEeeehh
Confidence            5889999999999999999999999999999999987766555444444333 344445666666568999999999998


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |.
T Consensus       194 Hr  195 (315)
T PF08003_consen  194 HR  195 (315)
T ss_pred             cc
Confidence            85

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=99.05  E-value=6.9e-10  Score=94.77  Aligned_cols=79  Identities=32%  Similarity=0.500  Sum_probs=69.5

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEEccccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTLD  241 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~~~~l~  241 (253)
                      .+.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...++.++.+.++|+.+.+..  ++||+|++..+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~  123 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE  123 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence            467999999999999999998866 7999999999999999998877765689999998877643  7899999999888


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ++
T Consensus       124 ~~  125 (224)
T TIGR01983       124 HV  125 (224)
T ss_pred             hC
Confidence            76

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=99.05  E-value=1.3e-09  Score=91.96  Aligned_cols=77  Identities=27%  Similarity=0.371  Sum_probs=65.0

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCc--CCCCccEEEE
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMD  236 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~--~~~~fD~Vi~  236 (253)
                      ..++.+|||+|||+|.++..+++. + ..+|+++|+++.|++.++++++.+++ .++.++++|+.+..  ..++||+|++
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~  117 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI  117 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence            357789999999999999998875 3 34899999999999999999998884 57999999997743  2368999998


Q ss_pred             cc
Q 025428          237 KG  238 (253)
Q Consensus       237 ~~  238 (253)
                      ..
T Consensus       118 ~~  119 (198)
T PRK00377        118 GG  119 (198)
T ss_pred             CC
Confidence            54

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.04  E-value=8.8e-10  Score=104.77  Aligned_cols=77  Identities=25%  Similarity=0.440  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC--CcCC-CCccEEEEcccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--TKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~--~~~~-~~fD~Vi~~~~l  240 (253)
                      ++.+|||||||+|.++..+++.+ .+|+|+|+|+.|++.+++...  ...++.++++|+..  ++++ ++||+|+++.++
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~--~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l  113 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESING--HYKNVKFMCADVTSPDLNISDGSVDLIFSNWLL  113 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhc--cCCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence            56799999999999999999984 599999999999998765422  23579999999964  4444 789999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      ||+
T Consensus       114 ~~l  116 (475)
T PLN02336        114 MYL  116 (475)
T ss_pred             HhC
Confidence            987

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.04  E-value=1.9e-09  Score=95.01  Aligned_cols=78  Identities=27%  Similarity=0.397  Sum_probs=64.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .++.+|||+|||+|.++..++... ..+++|+|+|+.+++.+++++......++.++++|+.+....++||+|+++..+
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy  185 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY  185 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence            466799999999999999999883 358999999999999999998733334799999999765334789999997644

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=99.03  E-value=1.3e-09  Score=93.93  Aligned_cols=79  Identities=30%  Similarity=0.464  Sum_probs=68.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++.+. +++++|+++.+++.++++....+. +++++..|+.+.+  ..++||+|++..++
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l  124 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAEHPGQFDVVTCMEML  124 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhhcCCCccEEEEhhHh
Confidence            4678999999999999999998865 899999999999999999877665 6888888888765  34789999999888


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +++
T Consensus       125 ~~~  127 (233)
T PRK05134        125 EHV  127 (233)
T ss_pred             hcc
Confidence            876

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=99.03  E-value=5.8e-10  Score=110.79  Aligned_cols=83  Identities=18%  Similarity=0.146  Sum_probs=70.9

Q ss_pred             HHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc--CCCCcc
Q 025428          157 EENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK--LERQFQ  232 (253)
Q Consensus       157 ~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~--~~~~fD  232 (253)
                      ..+....++++|||+|||||.+++.++..|+.+|+++|+|+.+++.|++|++.+|+.  +++++++|+.+..  ..++||
T Consensus       531 ~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fD  610 (702)
T PRK11783        531 RMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFD  610 (702)
T ss_pred             HHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcC
Confidence            444444567899999999999999999988878999999999999999999999985  6999999987643  246899


Q ss_pred             EEEEccc
Q 025428          233 LVMDKGT  239 (253)
Q Consensus       233 ~Vi~~~~  239 (253)
                      +|+++..
T Consensus       611 lIilDPP  617 (702)
T PRK11783        611 LIFIDPP  617 (702)
T ss_pred             EEEECCC
Confidence            9998753

>PHA03412 putative methyltransferase; Provisional

Probab=99.02  E-value=1.2e-09  Score=94.28  Aligned_cols=76  Identities=18%  Similarity=0.291  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~----g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      .+.+|||+|||+|.++..++++    ...+|+++|+++.+++.|+++.     .++.++++|+....+.++||+||+|..
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~~~~FDlIIsNPP  123 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEFDTLFDMAISNPP  123 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccccCCccEEEECCC
Confidence            4679999999999999999875    2348999999999999999874     358899999987766679999999998


Q ss_pred             cceec
Q 025428          240 LDAIG  244 (253)
Q Consensus       240 l~~i~  244 (253)
                      ++-+.
T Consensus       124 Y~~~~  128 (241)
T PHA03412        124 FGKIK  128 (241)
T ss_pred             CCCcc
Confidence            88653

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.02  E-value=2.3e-09  Score=94.04  Aligned_cols=74  Identities=16%  Similarity=0.188  Sum_probs=61.3

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---CCCccEEEEcccc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTL  240 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---~~~fD~Vi~~~~l  240 (253)
                      ..+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|++|++.++   ++++++|+.+...   .++||+|+++..+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~~~~~fDlVv~NPPy  163 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTALRGRVDILAANAPY  163 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence            458999999999999999876 33489999999999999999998765   4789999876422   3679999998755


Q ss_pred             c
Q 025428          241 D  241 (253)
Q Consensus       241 ~  241 (253)
                      .
T Consensus       164 ~  164 (251)
T TIGR03704       164 V  164 (251)
T ss_pred             C
Confidence            3

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.02  E-value=1.7e-09  Score=102.08  Aligned_cols=87  Identities=17%  Similarity=0.171  Sum_probs=72.5

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE  228 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~  228 (253)
                      +.++..+....++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++++++.|+.+++++++|+.++.  ++
T Consensus       239 s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~  318 (444)
T PRK14902        239 SMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFA  318 (444)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhc
Confidence            334444445567789999999999999999986  23489999999999999999999999988999999998764  34


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      ++||+|+++..
T Consensus       319 ~~fD~Vl~D~P  329 (444)
T PRK14902        319 EKFDKILVDAP  329 (444)
T ss_pred             ccCCEEEEcCC
Confidence            78999998764

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=99.02  E-value=1.4e-09  Score=102.47  Aligned_cols=99  Identities=20%  Similarity=0.205  Sum_probs=76.8

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----  226 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----  226 (253)
                      +.++..+..+.++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.+++++++.|+.+++++++|+.+++    
T Consensus       241 s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~  320 (434)
T PRK14901        241 AQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP  320 (434)
T ss_pred             HHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc
Confidence            344444445567889999999999999999987 2 2489999999999999999999999988999999998875    


Q ss_pred             C-CCCccEEEEcccc---ceeccCCCCCC
Q 025428          227 L-ERQFQLVMDKGTL---DAIGLHPDGPL  251 (253)
Q Consensus       227 ~-~~~fD~Vi~~~~l---~~i~~~pd~~~  251 (253)
                      . .++||.|+++...   -.+..+|+.++
T Consensus       321 ~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~  349 (434)
T PRK14901        321 QWRGYFDRILLDAPCSGLGTLHRHPDARW  349 (434)
T ss_pred             cccccCCEEEEeCCCCcccccccCcchhh
Confidence            2 3689999986432   22333566544

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=99.01  E-value=1.6e-09  Score=95.68  Aligned_cols=89  Identities=13%  Similarity=0.020  Sum_probs=72.7

Q ss_pred             ccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC
Q 025428          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE  228 (253)
Q Consensus       151 ~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~  228 (253)
                      ..+.+...+..+.++.+|||+|||+|..+..++.. + ...|+++|+++.+++.++++++++|+.++++++.|...++..
T Consensus        58 ~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~  137 (264)
T TIGR00446        58 ASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA  137 (264)
T ss_pred             HHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh
Confidence            33444444555567889999999999999999886 2 238999999999999999999999998899999998876533


Q ss_pred             -CCccEEEEccc
Q 025428          229 -RQFQLVMDKGT  239 (253)
Q Consensus       229 -~~fD~Vi~~~~  239 (253)
                       ++||+|+++..
T Consensus       138 ~~~fD~Vl~D~P  149 (264)
T TIGR00446       138 VPKFDAILLDAP  149 (264)
T ss_pred             ccCCCEEEEcCC
Confidence             67999998654

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=99.01  E-value=1.9e-09  Score=99.53  Aligned_cols=77  Identities=13%  Similarity=0.075  Sum_probs=66.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC--cC-CCCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KL-ERQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~--~~-~~~fD~Vi~~~  238 (253)
                      ..+..+||||||+|.++..+|.. +...++|+|+++.|++.+.+++..+++.|+.++++|+..+  .+ ++++|.|+++.
T Consensus       121 ~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnF  200 (390)
T PRK14121        121 NQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHF  200 (390)
T ss_pred             CCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence            35569999999999999999988 3348999999999999999999999999999999999764  23 48899999765


Q ss_pred             c
Q 025428          239 T  239 (253)
Q Consensus       239 ~  239 (253)
                      .
T Consensus       201 P  201 (390)
T PRK14121        201 P  201 (390)
T ss_pred             C
Confidence            4

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.01  E-value=1.7e-09  Score=95.16  Aligned_cols=75  Identities=20%  Similarity=0.325  Sum_probs=65.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.+++++..  ..+++++++|+.+.+++ .||.|+++..++
T Consensus        28 ~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~~-~~d~Vv~NlPy~  102 (258)
T PRK14896         28 TDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDLP-EFNKVVSNLPYQ  102 (258)
T ss_pred             CCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCch-hceEEEEcCCcc
Confidence            467899999999999999999995 4999999999999999988754  35899999999987654 489999987665

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.01  E-value=1.1e-09  Score=103.05  Aligned_cols=102  Identities=17%  Similarity=0.208  Sum_probs=76.0

Q ss_pred             ceeecCCCcCCccccccchHHHHhcc---CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428          136 CISISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF  212 (253)
Q Consensus       136 ~~~i~~~~~~~~~~~~~~~l~~~l~~---~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~  212 (253)
                      .+.+.+..+.+........+.+.+..   ..++.+|||+|||+|.++..+++. ..+|+|+|+++.|++.|++|++.+++
T Consensus       261 ~~~~~~~~F~Q~N~~~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~-~~~V~~vE~~~~av~~a~~n~~~~~~  339 (431)
T TIGR00479       261 SFSLSARDFFQVNSGQNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ-AKSVVGIEVVPESVEKAQQNAELNGI  339 (431)
T ss_pred             EEEECCCceeecCHHHHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh-CCEEEEEEcCHHHHHHHHHHHHHhCC
Confidence            44555554444433333334433322   245679999999999999999988 45999999999999999999999999


Q ss_pred             CceEEEEeccCCCc----C-CCCccEEEEcc
Q 025428          213 SCIKFLVDDVLDTK----L-ERQFQLVMDKG  238 (253)
Q Consensus       213 ~~i~~~~~D~~~~~----~-~~~fD~Vi~~~  238 (253)
                      .|++++++|+.+..    . .++||+|+.+.
T Consensus       340 ~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP  370 (431)
T TIGR00479       340 ANVEFLAGTLETVLPKQPWAGQIPDVLLLDP  370 (431)
T ss_pred             CceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence            89999999997631    2 25799998754

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.00  E-value=2.3e-09  Score=90.86  Aligned_cols=78  Identities=28%  Similarity=0.359  Sum_probs=67.2

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCC--CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~--~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      ++.+|||+|||+|.++..+++.+.  .+++++|+++.+++.++++..  ...+++++.+|+.+.+++ ++||+|+++.++
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~~  116 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPFEDNSFDAVTIAFGL  116 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCCCCCcEEEEEEeeee
Confidence            678999999999999999998854  389999999999999999875  224689999999988765 789999998888


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      |++
T Consensus       117 ~~~  119 (223)
T TIGR01934       117 RNV  119 (223)
T ss_pred             CCc
Confidence            764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.00  E-value=8.8e-10  Score=97.34  Aligned_cols=80  Identities=15%  Similarity=0.179  Sum_probs=62.4

Q ss_pred             CCCEEEEEcCCCcH----HHHHHHhcC------CCcEEEEeCCHHHHHHHHHHHHh----cC------------------
Q 025428          164 SSWSVLDIGTGNGL----LLQELSKQG------FSDLTGVDYSEDAINLAQSLANR----DG------------------  211 (253)
Q Consensus       164 ~~~~VLDiGcGtG~----~~~~la~~g------~~~v~gvD~s~~~l~~ar~~~~~----~g------------------  211 (253)
                      ++.+|||+|||||.    +++.+++.+      ..+|+|+|+|+.||+.|++..-.    .+                  
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            45699999999996    455555541      12899999999999999985310    01                  


Q ss_pred             ----C-CceEEEEeccCCCcC-CCCccEEEEcccccee
Q 025428          212 ----F-SCIKFLVDDVLDTKL-ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       212 ----~-~~i~~~~~D~~~~~~-~~~fD~Vi~~~~l~~i  243 (253)
                          + .+|+|.++|+.+.++ .++||+|+|..+|+|+
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf  216 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYF  216 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhC
Confidence                1 258999999999876 4899999999999987

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.00  E-value=1.7e-09  Score=95.64  Aligned_cols=70  Identities=23%  Similarity=0.293  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC----CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG----FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g----~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      ...+|||+|||+|.++..+++..    ...++|+|+|+.|++.|+++.     .++.++++|+.+++++ ++||+|++..
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~~~~~~~~d~~~lp~~~~sfD~I~~~~  159 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----PQVTFCVASSHRLPFADQSLDAIIRIY  159 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----CCCeEEEeecccCCCcCCceeEEEEec
Confidence            45689999999999999998762    126899999999999998753     4789999999998876 7999999854

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.99  E-value=1.1e-09  Score=100.80  Aligned_cols=89  Identities=13%  Similarity=0.154  Sum_probs=73.3

Q ss_pred             ceeecCCCcCCccccccchHHHHhccCC--CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC
Q 025428          136 CISISQGHMLNHVEDLKSEPVEENDKYL--SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS  213 (253)
Q Consensus       136 ~~~i~~~~~~~~~~~~~~~l~~~l~~~~--~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~  213 (253)
                      .+.+.++.+++.+......+++.+....  .+.+|||++||+|.+++.+++. +.+|+|+|+++.|++.|++|++.+++.
T Consensus       176 ~~~~~~~sF~Q~N~~~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~  254 (362)
T PRK05031        176 IYRQVENSFTQPNAAVNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGID  254 (362)
T ss_pred             EEEeCCCCeeccCHHHHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence            4566666677776677777777665532  2357999999999999988877 569999999999999999999999998


Q ss_pred             ceEEEEeccCCC
Q 025428          214 CIKFLVDDVLDT  225 (253)
Q Consensus       214 ~i~~~~~D~~~~  225 (253)
                      |++++++|+.+.
T Consensus       255 ~v~~~~~d~~~~  266 (362)
T PRK05031        255 NVQIIRMSAEEF  266 (362)
T ss_pred             cEEEEECCHHHH
Confidence            999999999764

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.99  E-value=2.5e-09  Score=100.67  Aligned_cols=89  Identities=19%  Similarity=0.201  Sum_probs=74.3

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--C
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L  227 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~  227 (253)
                      .+.++..+..+.++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++++++.|+.+++++++|+..++  .
T Consensus       225 ~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~  304 (431)
T PRK14903        225 SSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV  304 (431)
T ss_pred             HHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh
Confidence            3445555556678889999999999999999986  23489999999999999999999999988999999998775  2


Q ss_pred             CCCccEEEEcccc
Q 025428          228 ERQFQLVMDKGTL  240 (253)
Q Consensus       228 ~~~fD~Vi~~~~l  240 (253)
                      .++||.|+++...
T Consensus       305 ~~~fD~Vl~DaPC  317 (431)
T PRK14903        305 QDTFDRILVDAPC  317 (431)
T ss_pred             hccCCEEEECCCC
Confidence            4789999986544

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.98  E-value=1.3e-09  Score=98.05  Aligned_cols=75  Identities=23%  Similarity=0.405  Sum_probs=69.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCC-CCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      .+++.|||+|||||.++.+.|+.|+.+|+++|.|. +++.|++.+..|++.+ |+++++.+++..+| .+.|+|++-.
T Consensus        59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~-ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW  135 (346)
T KOG1499|consen   59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASS-IADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW  135 (346)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechH-HHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence            57899999999999999999999999999999998 5699999999999987 99999999998877 9999999843

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.98  E-value=7.1e-10  Score=88.28  Aligned_cols=79  Identities=22%  Similarity=0.301  Sum_probs=69.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      ..+++++|+|||+|.++...+-.+...|+|+||++++++.+++|+....+ ++.++++|+.++.+. +.||.++.+..|-
T Consensus        47 iEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv-qidlLqcdildle~~~g~fDtaviNppFG  125 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV-QIDLLQCDILDLELKGGIFDTAVINPPFG  125 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh-hhheeeeeccchhccCCeEeeEEecCCCC
Confidence            47889999999999999888877788999999999999999999988766 789999999998765 8899999887765


Q ss_pred             e
Q 025428          242 A  242 (253)
Q Consensus       242 ~  242 (253)
                      .
T Consensus       126 T  126 (185)
T KOG3420|consen  126 T  126 (185)
T ss_pred             c
Confidence            4

>PRK04266 fibrillarin; Provisional

Probab=98.97  E-value=4.1e-09  Score=91.07  Aligned_cols=76  Identities=12%  Similarity=0.163  Sum_probs=61.6

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC----cCCCCccEEE
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT----KLERQFQLVM  235 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~----~~~~~fD~Vi  235 (253)
                      ...++.+|||+|||+|.++..+++. +..+|+|+|++++|++.+.++++..  .|+.++.+|+.+.    ++.++||+|+
T Consensus        69 ~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~~l~~~~D~i~  146 (226)
T PRK04266         69 PIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYAHVVEKVDVIY  146 (226)
T ss_pred             CCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhhhccccCCEEE
Confidence            3357889999999999999999987 3348999999999999888776543  5899999999753    2346799999


Q ss_pred             Ecc
Q 025428          236 DKG  238 (253)
Q Consensus       236 ~~~  238 (253)
                      +..
T Consensus       147 ~d~  149 (226)
T PRK04266        147 QDV  149 (226)
T ss_pred             ECC
Confidence            754

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.96  E-value=1.6e-09  Score=99.48  Aligned_cols=89  Identities=12%  Similarity=0.137  Sum_probs=69.6

Q ss_pred             ceeecCCCcCCccccccchHHHHhccCC--CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC
Q 025428          136 CISISQGHMLNHVEDLKSEPVEENDKYL--SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS  213 (253)
Q Consensus       136 ~~~i~~~~~~~~~~~~~~~l~~~l~~~~--~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~  213 (253)
                      .+.+.++.+.+.+......+++.+.+..  .+.+|||+|||+|.+++.+++. +.+|+|+|++++|++.|++|++.+++.
T Consensus       167 ~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~-~~~v~~vE~~~~av~~a~~n~~~~~~~  245 (353)
T TIGR02143       167 IYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQN-FRRVLATEIAKPSVNAAQYNIAANNID  245 (353)
T ss_pred             EEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCC
Confidence            3445555555555555555665544432  2347999999999999999887 569999999999999999999999998


Q ss_pred             ceEEEEeccCCC
Q 025428          214 CIKFLVDDVLDT  225 (253)
Q Consensus       214 ~i~~~~~D~~~~  225 (253)
                      |++++++|+.++
T Consensus       246 ~v~~~~~d~~~~  257 (353)
T TIGR02143       246 NVQIIRMSAEEF  257 (353)
T ss_pred             cEEEEEcCHHHH
Confidence            999999999764

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.96  E-value=3.6e-09  Score=77.03  Aligned_cols=76  Identities=28%  Similarity=0.357  Sum_probs=64.6

Q ss_pred             EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC--CCCccEEEEccccce
Q 025428          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGTLDA  242 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~--~~~fD~Vi~~~~l~~  242 (253)
                      ++||+|||+|.++..++.....+++++|+++.++..+++.....+..+++++.+|+.+...  .++||+|+++.++++
T Consensus         1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~   78 (107)
T cd02440           1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHH   78 (107)
T ss_pred             CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceee
Confidence            4899999999999999985456999999999999999865544455579999999998763  478999999999887

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.96  E-value=2.1e-09  Score=95.23  Aligned_cols=74  Identities=20%  Similarity=0.241  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCC-ccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~-fD~Vi~~~~l  240 (253)
                      .++.+|||+|||+|.++..+++++. +|+|+|+++.|++.+++++..   .+++++++|+.+++++.. ++.|++|-.+
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~~~~~~vv~NlPY  115 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSELQPLKVVANLPY  115 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHHcCcceEEEeCCc
Confidence            4678999999999999999999965 999999999999999987642   479999999999876532 5888887654

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.96  E-value=5.2e-09  Score=98.41  Aligned_cols=87  Identities=13%  Similarity=0.108  Sum_probs=70.8

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--C-C
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-E  228 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~-~  228 (253)
                      +.+...+....++.+|||+|||+|..+..++..+. .+|+++|+|+.+++.+++++++.|+ +++++++|+.+++  + +
T Consensus       233 s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~-~~~~~~~D~~~~~~~~~~  311 (427)
T PRK10901        233 AQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL-KATVIVGDARDPAQWWDG  311 (427)
T ss_pred             HHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC-CeEEEEcCcccchhhccc
Confidence            33444444556788999999999999999998843 4899999999999999999999887 5789999998764  2 3


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      ++||.|+++...
T Consensus       312 ~~fD~Vl~D~Pc  323 (427)
T PRK10901        312 QPFDRILLDAPC  323 (427)
T ss_pred             CCCCEEEECCCC
Confidence            689999976643

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.96  E-value=2.4e-09  Score=92.98  Aligned_cols=87  Identities=17%  Similarity=0.248  Sum_probs=72.2

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC-
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-  227 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~-  227 (253)
                      +..++.++.+..+.++|||+|||+|..+..++..  +..+|+++|+++++++.|+++++.+|+. +++++++|+.+... 
T Consensus        56 ~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~  135 (234)
T PLN02781         56 EGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQ  135 (234)
T ss_pred             HHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH
Confidence            4556667777778889999999999988888765  3459999999999999999999999986 59999999977521 


Q ss_pred             ------CCCccEEEEcc
Q 025428          228 ------ERQFQLVMDKG  238 (253)
Q Consensus       228 ------~~~fD~Vi~~~  238 (253)
                            .++||+|+...
T Consensus       136 l~~~~~~~~fD~VfiDa  152 (234)
T PLN02781        136 LLNNDPKPEFDFAFVDA  152 (234)
T ss_pred             HHhCCCCCCCCEEEECC
Confidence                  36899999864

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.96  E-value=5e-09  Score=94.79  Aligned_cols=80  Identities=20%  Similarity=0.286  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc-CCC-ceEEEE-eccCCCc-----CCCCccEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-GFS-CIKFLV-DDVLDTK-----LERQFQLV  234 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~-g~~-~i~~~~-~D~~~~~-----~~~~fD~V  234 (253)
                      ...++||||||+|.+...++.+ ...+++|+|+++.+++.|+++++.+ ++. +|++++ .|...+.     ..+.||+|
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli  193 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT  193 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence            4579999999999888887765 2238999999999999999999999 786 487764 3332221     13689999


Q ss_pred             EEcccccee
Q 025428          235 MDKGTLDAI  243 (253)
Q Consensus       235 i~~~~l~~i  243 (253)
                      +||..++.-
T Consensus       194 vcNPPf~~s  202 (321)
T PRK11727        194 LCNPPFHAS  202 (321)
T ss_pred             EeCCCCcCc
Confidence            999988854

>PLN03075 nicotianamine synthase; Provisional

Probab=98.95  E-value=5.1e-09  Score=93.47  Aligned_cols=79  Identities=20%  Similarity=0.263  Sum_probs=62.9

Q ss_pred             CCCEEEEEcCCCcHH-HHHHH-hc-CCCcEEEEeCCHHHHHHHHHHHHh-cCCC-ceEEEEeccCCCcCC-CCccEEEEc
Q 025428          164 SSWSVLDIGTGNGLL-LQELS-KQ-GFSDLTGVDYSEDAINLAQSLANR-DGFS-CIKFLVDDVLDTKLE-RQFQLVMDK  237 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~-~~~la-~~-g~~~v~gvD~s~~~l~~ar~~~~~-~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~  237 (253)
                      ...+|+|||||.|.+ +..++ .+ ...+++|+|+++++++.|++.+.. .++. +++|..+|+.+.... +.||+|++.
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~  202 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA  202 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence            678999999997744 34343 33 334899999999999999999964 6776 499999999987533 789999999


Q ss_pred             ccccee
Q 025428          238 GTLDAI  243 (253)
Q Consensus       238 ~~l~~i  243 (253)
                       ++|++
T Consensus       203 -ALi~~  207 (296)
T PLN03075        203 -ALVGM  207 (296)
T ss_pred             -ccccc
Confidence             77765

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.94  E-value=5.5e-09  Score=93.90  Aligned_cols=79  Identities=19%  Similarity=0.164  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .+..+|||||||+|.++..++++. ..+++++|. +.+++.+++++...|+. +++++.+|+.+.++++ +|+|++..++
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~~-~D~v~~~~~l  225 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCRIL  225 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCCC-CCEEEeEhhh
Confidence            466799999999999999999883 348999998 78999999999988876 5999999998765554 7999998888


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      |+.
T Consensus       226 h~~  228 (306)
T TIGR02716       226 YSA  228 (306)
T ss_pred             hcC
Confidence            865

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.92  E-value=5.6e-09  Score=93.57  Aligned_cols=77  Identities=17%  Similarity=0.269  Sum_probs=66.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g-~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..+++.+ .+|+++|+++.|++.+++++...+ ..+++++++|+.+..+ ..||.|+++..++
T Consensus        35 ~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~~~d~VvaNlPY~  112 (294)
T PTZ00338         35 KPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-PYFDVCVANVPYQ  112 (294)
T ss_pred             CCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-cccCEEEecCCcc
Confidence            467899999999999999999985 489999999999999999987766 3579999999988654 4689999876554

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.92  E-value=2.1e-09  Score=90.00  Aligned_cols=98  Identities=16%  Similarity=0.198  Sum_probs=75.8

Q ss_pred             cCCccccccchHHHHhccC-CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEec
Q 025428          144 MLNHVEDLKSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDD  221 (253)
Q Consensus       144 ~~~~~~~~~~~l~~~l~~~-~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D  221 (253)
                      +..+.+.+..++...+... ..+.++||+.||||.+++..+++|+++|+.||.++.++...++|++..++.+ ++++++|
T Consensus        21 ~RPT~drvrealFniL~~~~~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d  100 (183)
T PF03602_consen   21 TRPTTDRVREALFNILQPRNLEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGD  100 (183)
T ss_dssp             S-SSSHHHHHHHHHHHHCH-HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESS
T ss_pred             cCCCcHHHHHHHHHHhcccccCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccC
Confidence            4445567788888888876 7899999999999999999999999999999999999999999999988875 9999999


Q ss_pred             cCCCc-----CCCCccEEEEccccc
Q 025428          222 VLDTK-----LERQFQLVMDKGTLD  241 (253)
Q Consensus       222 ~~~~~-----~~~~fD~Vi~~~~l~  241 (253)
                      .....     ...+||+|++...+.
T Consensus       101 ~~~~l~~~~~~~~~fDiIflDPPY~  125 (183)
T PF03602_consen  101 AFKFLLKLAKKGEKFDIIFLDPPYA  125 (183)
T ss_dssp             HHHHHHHHHHCTS-EEEEEE--STT
T ss_pred             HHHHHHhhcccCCCceEEEECCCcc
Confidence            75542     247899999866544

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.86  E-value=1.8e-08  Score=83.97  Aligned_cols=82  Identities=21%  Similarity=0.231  Sum_probs=62.1

Q ss_pred             hccCCCCCEEEEEcCCCcHHHHHHHhcCCC-c---------EEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcC
Q 025428          159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFS-D---------LTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL  227 (253)
Q Consensus       159 l~~~~~~~~VLDiGcGtG~~~~~la~~g~~-~---------v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~  227 (253)
                      +....++..|||..||+|.+++..+..+.. .         ++|+|+++++++.|++|++..|+.. +.+.+.|+.++++
T Consensus        23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~~  102 (179)
T PF01170_consen   23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELPL  102 (179)
T ss_dssp             HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGGG
T ss_pred             HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhccc
Confidence            334467789999999999999988876321 3         7899999999999999999998874 8999999999984


Q ss_pred             -CCCccEEEEcccc
Q 025428          228 -ERQFQLVMDKGTL  240 (253)
Q Consensus       228 -~~~fD~Vi~~~~l  240 (253)
                       .+++|+|+++..+
T Consensus       103 ~~~~~d~IvtnPPy  116 (179)
T PF01170_consen  103 PDGSVDAIVTNPPY  116 (179)
T ss_dssp             TTSBSCEEEEE--S
T ss_pred             ccCCCCEEEECcch
Confidence             5899999997654

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.85  E-value=8.4e-09  Score=94.71  Aligned_cols=91  Identities=26%  Similarity=0.369  Sum_probs=66.4

Q ss_pred             hcceeecCCCcCCccccccchHHHHhccC--CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC
Q 025428          134 SLCISISQGHMLNHVEDLKSEPVEENDKY--LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  211 (253)
Q Consensus       134 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~--~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g  211 (253)
                      ++.+.+.++.+++........|++.+...  ..+..|||+.||+|.++..+|+. +.+|+|+|+++.+++.|++|++.++
T Consensus       164 ~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~-~~~V~gvE~~~~av~~A~~Na~~N~  242 (352)
T PF05958_consen  164 GLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKK-AKKVIGVEIVEEAVEDARENAKLNG  242 (352)
T ss_dssp             TEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCC-SSEEEEEES-HHHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhh-CCeEEEeeCCHHHHHHHHHHHHHcC
Confidence            34566777777877777777777665443  22348999999999999999998 5699999999999999999999999


Q ss_pred             CCceEEEEeccCCC
Q 025428          212 FSCIKFLVDDVLDT  225 (253)
Q Consensus       212 ~~~i~~~~~D~~~~  225 (253)
                      +.|++|+.+++.++
T Consensus       243 i~n~~f~~~~~~~~  256 (352)
T PF05958_consen  243 IDNVEFIRGDAEDF  256 (352)
T ss_dssp             --SEEEEE--SHHC
T ss_pred             CCcceEEEeeccch
Confidence            99999999887553

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PLN02672 methionine S-methyltransferase

Probab=98.84  E-value=8.7e-09  Score=105.46  Aligned_cols=75  Identities=17%  Similarity=0.252  Sum_probs=63.5

Q ss_pred             CCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCC----------------CceEEEEeccCCCcC
Q 025428          165 SWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF----------------SCIKFLVDDVLDTKL  227 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~----------------~~i~~~~~D~~~~~~  227 (253)
                      +.+|||+|||+|.+++.+++.. ..+|+|+|+|+.+++.|++|++.+++                .+++|+++|+.+...
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~  198 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR  198 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence            4689999999999999999873 35899999999999999999987643                269999999987643


Q ss_pred             C--CCccEEEEccc
Q 025428          228 E--RQFQLVMDKGT  239 (253)
Q Consensus       228 ~--~~fD~Vi~~~~  239 (253)
                      .  .+||+|++|..
T Consensus       199 ~~~~~fDlIVSNPP  212 (1082)
T PLN02672        199 DNNIELDRIVGCIP  212 (1082)
T ss_pred             ccCCceEEEEECCC
Confidence            2  36999999875

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.84  E-value=2.1e-08  Score=94.26  Aligned_cols=87  Identities=13%  Similarity=0.052  Sum_probs=68.4

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC--
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL--  227 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~--  227 (253)
                      .+.++..+..+.++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++++++.|+. ++.+..+|....+.  
T Consensus       226 ~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~  305 (426)
T TIGR00563       226 SAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWA  305 (426)
T ss_pred             HHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccc
Confidence            3444444445567889999999999999999986 4348999999999999999999999886 24447778765543  


Q ss_pred             -CCCccEEEEcc
Q 025428          228 -ERQFQLVMDKG  238 (253)
Q Consensus       228 -~~~fD~Vi~~~  238 (253)
                       .++||.|++..
T Consensus       306 ~~~~fD~VllDa  317 (426)
T TIGR00563       306 ENEQFDRILLDA  317 (426)
T ss_pred             cccccCEEEEcC
Confidence             37899999764

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.83  E-value=1.5e-08  Score=88.87  Aligned_cols=75  Identities=23%  Similarity=0.361  Sum_probs=63.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCcc---EEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ---LVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD---~Vi~~~~  239 (253)
                      .++.+|||||||+|.++..+++++. +++++|+++.|++.++++...  ..+++++++|+.+.+++ .||   +|+++-.
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~~-~~d~~~~vvsNlP  103 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDLP-DFPKQLKVVSNLP  103 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCChh-HcCCcceEEEcCC
Confidence            4678999999999999999999964 899999999999999987643  35799999999988764 466   8888766


Q ss_pred             cc
Q 025428          240 LD  241 (253)
Q Consensus       240 l~  241 (253)
                      +|
T Consensus       104 y~  105 (253)
T TIGR00755       104 YN  105 (253)
T ss_pred             hh
Confidence            54

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR03438 probable methyltransferase

Probab=98.83  E-value=1.8e-08  Score=90.64  Aligned_cols=81  Identities=14%  Similarity=0.090  Sum_probs=60.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCC-cCCCCc-----cE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDT-KLERQF-----QL  233 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~-~~~~~f-----D~  233 (253)
                      .++.+|||+|||||..+..|++..  ..+++++|+|++||+.+++++..... .++.++++|+.+. +....+     .+
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~  141 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLG  141 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEE
Confidence            356799999999999999999883  24899999999999999998765431 1578899999874 333322     34


Q ss_pred             EEEcccccee
Q 025428          234 VMDKGTLDAI  243 (253)
Q Consensus       234 Vi~~~~l~~i  243 (253)
                      +++..+++++
T Consensus       142 ~~~gs~~~~~  151 (301)
T TIGR03438       142 FFPGSTIGNF  151 (301)
T ss_pred             EEecccccCC
Confidence            4444566665

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.82  E-value=1e-08  Score=96.25  Aligned_cols=103  Identities=20%  Similarity=0.273  Sum_probs=83.1

Q ss_pred             hcceeecCCCcCCccccccchHHHHhccC---CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc
Q 025428          134 SLCISISQGHMLNHVEDLKSEPVEENDKY---LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (253)
Q Consensus       134 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~---~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~  210 (253)
                      ...+.+....+.+....+...|.+.....   .++.+|||+-||.|.+++.+|++ ..+|+|+|+++++++.|++|++.+
T Consensus       260 ~~~~~~~~~sF~Q~N~~~~ekl~~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n  338 (432)
T COG2265         260 GVSFQISPRSFFQVNPAVAEKLYETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAAN  338 (432)
T ss_pred             ceEEEeCCCCceecCHHHHHHHHHHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHc
Confidence            34455666666666666666666555443   35679999999999999999988 569999999999999999999999


Q ss_pred             CCCceEEEEeccCCCcCC----CCccEEEEc
Q 025428          211 GFSCIKFLVDDVLDTKLE----RQFQLVMDK  237 (253)
Q Consensus       211 g~~~i~~~~~D~~~~~~~----~~fD~Vi~~  237 (253)
                      ++.|++|+.++.++....    ..+|+|+.+
T Consensus       339 ~i~N~~f~~~~ae~~~~~~~~~~~~d~VvvD  369 (432)
T COG2265         339 GIDNVEFIAGDAEEFTPAWWEGYKPDVVVVD  369 (432)
T ss_pred             CCCcEEEEeCCHHHHhhhccccCCCCEEEEC
Confidence            999999999999987643    478888864

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.82  E-value=1.4e-08  Score=86.69  Aligned_cols=70  Identities=21%  Similarity=0.217  Sum_probs=56.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-C-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--------C-CCCc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-F-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------L-ERQF  231 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--------~-~~~f  231 (253)
                      .++.+|||||||||.++..+++.. . .+|+|||+++ |          ..+.+++++++|+.+..        + .++|
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~----------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~  118 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M----------DPIVGVDFLQGDFRDELVLKALLERVGDSKV  118 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c----------cCCCCcEEEecCCCChHHHHHHHHHhCCCCC
Confidence            567899999999999999999873 2 4899999998 2          13357899999999853        3 3789


Q ss_pred             cEEEEcccccee
Q 025428          232 QLVMDKGTLDAI  243 (253)
Q Consensus       232 D~Vi~~~~l~~i  243 (253)
                      |+|+++.+.++.
T Consensus       119 D~V~S~~~~~~~  130 (209)
T PRK11188        119 QVVMSDMAPNMS  130 (209)
T ss_pred             CEEecCCCCccC
Confidence            999998876664

>PRK04457 spermidine synthase; Provisional

Probab=98.80  E-value=1.4e-08  Score=89.66  Aligned_cols=75  Identities=15%  Similarity=0.136  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCc--CCCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~--~~~~fD~Vi~~  237 (253)
                      .+..+|||||||+|.++..+++. +..+++++|+++++++.|++++...+. ++++++++|+.+..  .+++||+|+++
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            45679999999999999999877 445899999999999999998765443 47999999987652  23689999985

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.79  E-value=5.6e-08  Score=81.10  Aligned_cols=98  Identities=18%  Similarity=0.199  Sum_probs=83.4

Q ss_pred             cCCccccccchHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEec
Q 025428          144 MLNHVEDLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD  221 (253)
Q Consensus       144 ~~~~~~~~~~~l~~~l~~-~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D  221 (253)
                      ...+.+.+...+..++.. ...+.++||+.+|+|.+++..+++|+..++.||.+..++...++|++..++. +++++..|
T Consensus        22 ~RPT~drVREalFNil~~~~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~d  101 (187)
T COG0742          22 TRPTTDRVREALFNILAPDEIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRND  101 (187)
T ss_pred             cCCCchHHHHHHHHhccccccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeec
Confidence            444556778888899888 4899999999999999999999999999999999999999999999988854 68999999


Q ss_pred             cCCCc--CC--CCccEEEEccccc
Q 025428          222 VLDTK--LE--RQFQLVMDKGTLD  241 (253)
Q Consensus       222 ~~~~~--~~--~~fD~Vi~~~~l~  241 (253)
                      +....  ..  ++||+|+....++
T Consensus       102 a~~~L~~~~~~~~FDlVflDPPy~  125 (187)
T COG0742         102 ALRALKQLGTREPFDLVFLDPPYA  125 (187)
T ss_pred             HHHHHHhcCCCCcccEEEeCCCCc
Confidence            88442  22  3599999987766

>PRK04148 hypothetical protein; Provisional

Probab=98.77  E-value=4.8e-08  Score=77.46  Aligned_cols=66  Identities=26%  Similarity=0.513  Sum_probs=57.2

Q ss_pred             CCCEEEEEcCCCcH-HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEEc
Q 025428          164 SSWSVLDIGTGNGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDK  237 (253)
Q Consensus       164 ~~~~VLDiGcGtG~-~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~~  237 (253)
                      ++.++||||||+|. ++..|++.|. +|+++|+++.+++.++++       .++++++|+.+..+.  +.+|+|.+.
T Consensus        16 ~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-------~~~~v~dDlf~p~~~~y~~a~liysi   84 (134)
T PRK04148         16 KNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-------GLNAFVDDLFNPNLEIYKNAKLIYSI   84 (134)
T ss_pred             cCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-------CCeEEECcCCCCCHHHHhcCCEEEEe
Confidence            45789999999996 9999998887 999999999999988775       468999999998765  789998873

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.76  E-value=3.8e-08  Score=85.98  Aligned_cols=103  Identities=23%  Similarity=0.302  Sum_probs=73.3

Q ss_pred             eecCCC-cCCccccc-cchHHHHhccC--CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428          138 SISQGH-MLNHVEDL-KSEPVEENDKY--LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF  212 (253)
Q Consensus       138 ~i~~~~-~~~~~~~~-~~~l~~~l~~~--~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~  212 (253)
                      ...++. +|...++. ...+++.+.+.  .++..+||+|||+|.++..++.. +...|+++|.|+.++.+|.+|++++++
T Consensus       118 ~~~pgVlIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l  197 (328)
T KOG2904|consen  118 VCKPGVLIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKL  197 (328)
T ss_pred             EecCCeeecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhh
Confidence            344444 55544432 34444444433  34458999999999999999987 656999999999999999999999988


Q ss_pred             Cc-eEEEEe----ccCCCc--CCCCccEEEEcccc
Q 025428          213 SC-IKFLVD----DVLDTK--LERQFQLVMDKGTL  240 (253)
Q Consensus       213 ~~-i~~~~~----D~~~~~--~~~~fD~Vi~~~~l  240 (253)
                      .+ +.+++-    |..+..  +.++.|++++|...
T Consensus       198 ~g~i~v~~~~me~d~~~~~~l~~~~~dllvsNPPY  232 (328)
T KOG2904|consen  198 SGRIEVIHNIMESDASDEHPLLEGKIDLLVSNPPY  232 (328)
T ss_pred             cCceEEEecccccccccccccccCceeEEecCCCc
Confidence            74 666644    443332  23889999998653

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.76  E-value=3e-08  Score=82.93  Aligned_cols=70  Identities=20%  Similarity=0.242  Sum_probs=54.3

Q ss_pred             ccCCCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--------C-C
Q 025428          160 DKYLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------L-E  228 (253)
Q Consensus       160 ~~~~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--------~-~  228 (253)
                      ....++.+|||+|||+|.++..++...  ..+|+++|+|+.+           ...+++++++|+.+..        . .
T Consensus        28 ~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~~~~~   96 (188)
T TIGR00438        28 KLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRERVGD   96 (188)
T ss_pred             cccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHHHhCC
Confidence            344678899999999999999998873  3379999999964           1246889999987643        2 3


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      ++||+|++++..
T Consensus        97 ~~~D~V~~~~~~  108 (188)
T TIGR00438        97 DKVDVVMSDAAP  108 (188)
T ss_pred             CCccEEEcCCCC
Confidence            679999997653

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.75  E-value=1.7e-08  Score=82.77  Aligned_cols=73  Identities=21%  Similarity=0.315  Sum_probs=56.3

Q ss_pred             EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC----CCccEEEEcccc
Q 025428          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE----RQFQLVMDKGTL  240 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~----~~fD~Vi~~~~l  240 (253)
                      .|||+.||.|..++.+|+. +.+|++||+++..++.|+.|++..|+. +|+++++|+.+....    ..||+|+++..+
T Consensus         2 ~vlD~fcG~GGNtIqFA~~-~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPW   79 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART-FDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPW   79 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT-T-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---B
T ss_pred             EEEEeccCcCHHHHHHHHh-CCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCC
Confidence            6999999999999999999 669999999999999999999999976 799999999886422    228999986543

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.75  E-value=2.4e-08  Score=92.43  Aligned_cols=87  Identities=22%  Similarity=0.275  Sum_probs=74.6

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCcC--
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL--  227 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~~--  227 (253)
                      ++.....+.+...+++|||+.|-||.++...+..|+++||+||+|..+|+.|++|++.||++  .+.|+++|+.++.-  
T Consensus       205 qR~~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~  284 (393)
T COG1092         205 QRDNRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKA  284 (393)
T ss_pred             hHHHHHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHH
Confidence            44455566666669999999999999999999999999999999999999999999999986  48999999988742  


Q ss_pred             ---CCCccEEEEcc
Q 025428          228 ---ERQFQLVMDKG  238 (253)
Q Consensus       228 ---~~~fD~Vi~~~  238 (253)
                         ..+||+|+...
T Consensus       285 ~~~g~~fDlIilDP  298 (393)
T COG1092         285 ERRGEKFDLIILDP  298 (393)
T ss_pred             HhcCCcccEEEECC
Confidence               24899999753

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=98.72  E-value=3.7e-08  Score=88.27  Aligned_cols=74  Identities=22%  Similarity=0.386  Sum_probs=68.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~  237 (253)
                      .+++.|||+|||+|.++.+.+..|+++|++++.|+ |.+.|++..+.+++. +|.++.|-+++..++++.|++|+-
T Consensus       176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISE  250 (517)
T KOG1500|consen  176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISE  250 (517)
T ss_pred             cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccccCchhccEEEec
Confidence            47889999999999999999999999999999987 999999999988876 699999999999999999999973

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.72  E-value=2.9e-08  Score=83.55  Aligned_cols=79  Identities=19%  Similarity=0.226  Sum_probs=66.9

Q ss_pred             CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceE-EEEeccCCCc--CCCCccEEEEccccc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIK-FLVDDVLDTK--LERQFQLVMDKGTLD  241 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~-~~~~D~~~~~--~~~~fD~Vi~~~~l~  241 (253)
                      ...||++|||||..-.+.--....+||++|.++.|-+.+.+.++.+...++. |++++.++++  .++++|+|++..+|+
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC  156 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLC  156 (252)
T ss_pred             ccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence            3478999999999888776554459999999999999999999887666766 9999999998  349999999988777


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ..
T Consensus       157 Sv  158 (252)
T KOG4300|consen  157 SV  158 (252)
T ss_pred             cc
Confidence            54

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.71  E-value=4.9e-08  Score=88.36  Aligned_cols=80  Identities=20%  Similarity=0.133  Sum_probs=69.8

Q ss_pred             hccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEe-ccCCCcCC-CCccEEEE
Q 025428          159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLE-RQFQLVMD  236 (253)
Q Consensus       159 l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~-D~~~~~~~-~~fD~Vi~  236 (253)
                      +....++..|||--||||.+++...-.|. +++|+|++..|++-|+.|++..++....+... |+.+++++ +++|.|++
T Consensus       192 La~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat  270 (347)
T COG1041         192 LARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT  270 (347)
T ss_pred             HhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence            33447888999999999999999999988 99999999999999999999999888777766 99999987 45999887


Q ss_pred             ccc
Q 025428          237 KGT  239 (253)
Q Consensus       237 ~~~  239 (253)
                      ...
T Consensus       271 DPP  273 (347)
T COG1041         271 DPP  273 (347)
T ss_pred             cCC
Confidence            543

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.70  E-value=1.4e-08  Score=95.28  Aligned_cols=93  Identities=23%  Similarity=0.288  Sum_probs=78.8

Q ss_pred             hhhcceeecCCCcCCccccccchHHHHhcc---CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH
Q 025428          132 TKSLCISISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN  208 (253)
Q Consensus       132 ~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~---~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~  208 (253)
                      ..++.|.|.++.+++.++...+-|...+..   +..+..+||+.||||.++..+++. .++|+|+++++.+++-|+.|++
T Consensus       348 l~~ltF~iSp~AFFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~  426 (534)
T KOG2187|consen  348 LLGLTFRISPGAFFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQ  426 (534)
T ss_pred             cCCeEEEECCchhhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcch
Confidence            345678899999998887665555555443   356789999999999999999987 7799999999999999999999


Q ss_pred             hcCCCceEEEEeccCCC
Q 025428          209 RDGFSCIKFLVDDVLDT  225 (253)
Q Consensus       209 ~~g~~~i~~~~~D~~~~  225 (253)
                      .+|++|++|++|-++++
T Consensus       427 ~NgisNa~Fi~gqaE~~  443 (534)
T KOG2187|consen  427 INGISNATFIVGQAEDL  443 (534)
T ss_pred             hcCccceeeeecchhhc
Confidence            99999999999966665

>PLN02476 O-methyltransferase

Probab=98.70  E-value=6.1e-08  Score=86.02  Aligned_cols=89  Identities=8%  Similarity=0.097  Sum_probs=74.0

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK  226 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~  226 (253)
                      ..+..++.++.+..+.++|||||||+|..+..++.. + ..+++++|.++++++.|++++++.|+. +|+++.+|+.+..
T Consensus       104 ~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L  183 (278)
T PLN02476        104 PDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESL  183 (278)
T ss_pred             HHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence            446677777777778899999999999999999975 2 237999999999999999999999997 6999999987742


Q ss_pred             --C-----CCCccEEEEcc
Q 025428          227 --L-----ERQFQLVMDKG  238 (253)
Q Consensus       227 --~-----~~~fD~Vi~~~  238 (253)
                        +     .++||+|+...
T Consensus       184 ~~l~~~~~~~~FD~VFIDa  202 (278)
T PLN02476        184 KSMIQNGEGSSYDFAFVDA  202 (278)
T ss_pred             HHHHhcccCCCCCEEEECC
Confidence              1     25799998754

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.69  E-value=3.7e-08  Score=83.88  Aligned_cols=89  Identities=19%  Similarity=0.227  Sum_probs=71.4

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK  226 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~  226 (253)
                      ..+..++..+.+..+.++||+|||++|..+..++.. + ..+|+.+|++++..+.|++++++.|+. +|+++.+|+.+..
T Consensus        31 ~~~g~lL~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l  110 (205)
T PF01596_consen   31 PETGQLLQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVL  110 (205)
T ss_dssp             HHHHHHHHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHH
T ss_pred             HHHHHHHHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhH
Confidence            345566666666667789999999999999999976 2 249999999999999999999999986 6999999997742


Q ss_pred             C-------CCCccEEEEcc
Q 025428          227 L-------ERQFQLVMDKG  238 (253)
Q Consensus       227 ~-------~~~fD~Vi~~~  238 (253)
                      .       .++||+|+...
T Consensus       111 ~~l~~~~~~~~fD~VFiDa  129 (205)
T PF01596_consen  111 PELANDGEEGQFDFVFIDA  129 (205)
T ss_dssp             HHHHHTTTTTSEEEEEEES
T ss_pred             HHHHhccCCCceeEEEEcc
Confidence            1       25799999754

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PRK00811 spermidine synthase; Provisional

Probab=98.69  E-value=5.3e-08  Score=86.86  Aligned_cols=76  Identities=22%  Similarity=0.346  Sum_probs=63.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc--C---CCceEEEEeccCCCcC--CCCccEEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--G---FSCIKFLVDDVLDTKL--ERQFQLVM  235 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~--g---~~~i~~~~~D~~~~~~--~~~fD~Vi  235 (253)
                      ...+||+||||+|.++..++++ +..+|+++|+++.+++.|++.+...  +   -++++++.+|+.....  .++||+|+
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  155 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII  155 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence            5679999999999999999987 6679999999999999999987542  1   1369999999877532  47899999


Q ss_pred             Eccc
Q 025428          236 DKGT  239 (253)
Q Consensus       236 ~~~~  239 (253)
                      +..+
T Consensus       156 ~D~~  159 (283)
T PRK00811        156 VDST  159 (283)
T ss_pred             ECCC
Confidence            8653

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.68  E-value=4.6e-08  Score=90.70  Aligned_cols=74  Identities=24%  Similarity=0.230  Sum_probs=64.7

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-CCCccEEEEcc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKG  238 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-~~~fD~Vi~~~  238 (253)
                      +.+|||++||+|.+++.++.. +..+|+++|+++.+++.+++|++.+++.+++++++|+..+.. .++||+|+++.
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lDP  133 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDIDP  133 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEECC
Confidence            468999999999999999876 555899999999999999999999999888999999977543 46799998864

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.68  E-value=1.6e-08  Score=86.81  Aligned_cols=78  Identities=19%  Similarity=0.299  Sum_probs=59.7

Q ss_pred             EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCc-CCCCccEEEEccccceec
Q 025428          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDAIG  244 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~-~~~~fD~Vi~~~~l~~i~  244 (253)
                      .++|+|||+|..++.++.+ +++|+|+|+|+.||++|++.....-. ........+..++. .+++.|+|++-+++|++-
T Consensus        36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~Aqa~HWFd  114 (261)
T KOG3010|consen   36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEESVDLITAAQAVHWFD  114 (261)
T ss_pred             eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCcceeeehhhhhHHhhc
Confidence            8999999999889999999 88999999999999999886432111 12334444444443 258999999999999874


Q ss_pred             c
Q 025428          245 L  245 (253)
Q Consensus       245 ~  245 (253)
                      +
T Consensus       115 l  115 (261)
T KOG3010|consen  115 L  115 (261)
T ss_pred             h
Confidence            3

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.67  E-value=3.8e-08  Score=87.70  Aligned_cols=86  Identities=22%  Similarity=0.254  Sum_probs=66.8

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc----
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK----  226 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~----  226 (253)
                      +....++....++++|||+.|-||.++...+..|+.+|++||.|..+++.+++|+..||++  +++|+++|+.+..    
T Consensus       112 R~nR~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~  191 (286)
T PF10672_consen  112 RENRKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK  191 (286)
T ss_dssp             HHHHHHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH
T ss_pred             HhhHHHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh
Confidence            3344444455678999999999999999999989889999999999999999999999975  6999999998742    


Q ss_pred             CCCCccEEEEcc
Q 025428          227 LERQFQLVMDKG  238 (253)
Q Consensus       227 ~~~~fD~Vi~~~  238 (253)
                      -.++||+||+..
T Consensus       192 ~~~~fD~IIlDP  203 (286)
T PF10672_consen  192 KGGRFDLIILDP  203 (286)
T ss_dssp             HTT-EEEEEE--
T ss_pred             cCCCCCEEEECC
Confidence            137899999854

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.67  E-value=5e-08  Score=84.32  Aligned_cols=40  Identities=23%  Similarity=0.353  Sum_probs=36.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHH
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL  202 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~  202 (253)
                      .++.+|||+|||||.++..++++|+.+|+|+|++++|+..
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence            4677999999999999999999988899999999988875

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.66  E-value=9.9e-08  Score=80.89  Aligned_cols=78  Identities=19%  Similarity=0.178  Sum_probs=58.9

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEccc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      ..++.+|||+.||.|.+++.+++. ..+.|+++|++|.+++..+++++.|++.+ +..+++|+.++...+.||.|+++..
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~lp  178 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNLP  178 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--T
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECCh
Confidence            457889999999999999999984 34589999999999999999999999985 8999999999866789999998654

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=98.64  E-value=2.6e-09  Score=91.07  Aligned_cols=84  Identities=27%  Similarity=0.336  Sum_probs=60.8

Q ss_pred             HHHHhccCC--CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---CCC
Q 025428          155 PVEENDKYL--SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LER  229 (253)
Q Consensus       155 l~~~l~~~~--~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---~~~  229 (253)
                      +.+++.+..  +-.++||+|||||..+..+-.. ..+++|+|||++|++.|.++--..     .+.++++..+.   -+.
T Consensus       114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~YD-----~L~~Aea~~Fl~~~~~e  187 (287)
T COG4976         114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGLYD-----TLYVAEAVLFLEDLTQE  187 (287)
T ss_pred             HHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccchH-----HHHHHHHHHHhhhccCC
Confidence            344444442  3579999999999999999988 669999999999999999862111     23334443322   237


Q ss_pred             CccEEEEccccceec
Q 025428          230 QFQLVMDKGTLDAIG  244 (253)
Q Consensus       230 ~fD~Vi~~~~l~~i~  244 (253)
                      +||+|+.-.||-+++
T Consensus       188 r~DLi~AaDVl~YlG  202 (287)
T COG4976         188 RFDLIVAADVLPYLG  202 (287)
T ss_pred             cccchhhhhHHHhhc
Confidence            899999988887764

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.64  E-value=1.1e-07  Score=81.39  Aligned_cols=88  Identities=20%  Similarity=0.237  Sum_probs=74.0

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEE-eccCCC
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLV-DDVLDT  225 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~-~D~~~~  225 (253)
                      ..+..++.++.+..+.++||+||++.|.-+..++.. + ..++|.||+++++++.|++++++.|+.+ |.++. +|..+.
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~  124 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV  124 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence            446667777777788899999999999999999987 3 3489999999999999999999999986 88888 587665


Q ss_pred             cC---CCCccEEEEc
Q 025428          226 KL---ERQFQLVMDK  237 (253)
Q Consensus       226 ~~---~~~fD~Vi~~  237 (253)
                      ..   .++||+||..
T Consensus       125 l~~~~~~~fDliFID  139 (219)
T COG4122         125 LSRLLDGSFDLVFID  139 (219)
T ss_pred             HHhccCCCccEEEEe
Confidence            32   3899999874

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.61  E-value=2.8e-07  Score=80.02  Aligned_cols=80  Identities=23%  Similarity=0.215  Sum_probs=70.5

Q ss_pred             hccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEE
Q 025428          159 NDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVM  235 (253)
Q Consensus       159 l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi  235 (253)
                      .....++.+|||.|+|+|.++..|+.. | ..+|+.+|+-++.++.|++|++..++.+ +.+..+|+.+...++.||+|+
T Consensus        89 ~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~  168 (256)
T COG2519          89 RLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVF  168 (256)
T ss_pred             HcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEE
Confidence            334578999999999999999999975 3 3599999999999999999999988887 999999999988778999999


Q ss_pred             Ecc
Q 025428          236 DKG  238 (253)
Q Consensus       236 ~~~  238 (253)
                      ...
T Consensus       169 LDm  171 (256)
T COG2519         169 LDL  171 (256)
T ss_pred             EcC
Confidence            753

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.60  E-value=1.8e-07  Score=88.39  Aligned_cols=72  Identities=21%  Similarity=0.356  Sum_probs=60.3

Q ss_pred             CCEEEEEcCCCcHHHHHHHhcC-----CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEE
Q 025428          165 SWSVLDIGTGNGLLLQELSKQG-----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMD  236 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~g-----~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~  236 (253)
                      +..|||+|||+|.++.+.++.+     ..+|++|+.|+.++...+++++.++.. +|+++++|+++...+.++|+||+
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVS  264 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVS  264 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEE
Confidence            5789999999999998887764     459999999999998888887888885 69999999999998899999997

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PTZ00146 fibrillarin; Provisional

Probab=98.59  E-value=2.5e-07  Score=82.52  Aligned_cols=74  Identities=16%  Similarity=0.216  Sum_probs=57.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----CCCCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----~~~~fD~Vi~  236 (253)
                      .++.+|||+|||+|.++..+++. + ...|+++|+++.|++...+.++..  .||.++.+|+....    +..+||+|++
T Consensus       131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~~~~~~vDvV~~  208 (293)
T PTZ00146        131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYRMLVPMVDVIFA  208 (293)
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhhcccCCCCEEEE
Confidence            57789999999999999999998 3 238999999998765555544322  58899999987531    2368999998


Q ss_pred             cc
Q 025428          237 KG  238 (253)
Q Consensus       237 ~~  238 (253)
                      ..
T Consensus       209 Dv  210 (293)
T PTZ00146        209 DV  210 (293)
T ss_pred             eC
Confidence            65

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.59  E-value=2.9e-07  Score=77.76  Aligned_cols=71  Identities=23%  Similarity=0.363  Sum_probs=59.1

Q ss_pred             CEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---C-CCCccEEEE
Q 025428          166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---L-ERQFQLVMD  236 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---~-~~~fD~Vi~  236 (253)
                      ..+||||||.|.++..+|.. +-..++|+|+....+..+.+++...++.|+.++++|+..+.   + ++++|.|..
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i   94 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYI   94 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred             CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEE
Confidence            38999999999999999988 44499999999999999999999999999999999998842   2 377777765

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.55  E-value=2.9e-07  Score=82.44  Aligned_cols=84  Identities=14%  Similarity=0.081  Sum_probs=66.2

Q ss_pred             HHHHhccCCCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC--CC-
Q 025428          155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ER-  229 (253)
Q Consensus       155 l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~--~~-  229 (253)
                      +++.+.. .++..+||++||.|.++..+++..  ..+|+|+|.++.|++.|++++..  ..+++++++|+.++..  +. 
T Consensus        11 vl~~L~~-~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~~   87 (296)
T PRK00050         11 VVDALAI-KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAEG   87 (296)
T ss_pred             HHHhhCC-CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHcC
Confidence            3444432 467799999999999999999983  35899999999999999998765  3579999999988742  22 


Q ss_pred             --CccEEEEccccc
Q 025428          230 --QFQLVMDKGTLD  241 (253)
Q Consensus       230 --~fD~Vi~~~~l~  241 (253)
                        ++|.|+++.-+.
T Consensus        88 ~~~vDgIl~DLGvS  101 (296)
T PRK00050         88 LGKVDGILLDLGVS  101 (296)
T ss_pred             CCccCEEEECCCcc
Confidence              799999855333

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=98.53  E-value=3.3e-07  Score=75.90  Aligned_cols=79  Identities=23%  Similarity=0.325  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcC--C-CceEEEEeccCCCc----C-CCCccE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVDDVLDTK----L-ERQFQL  233 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g--~-~~i~~~~~D~~~~~----~-~~~fD~  233 (253)
                      .++.+||++|||+|..++.++.. +..+|+..|+++ .++..+.|++.++  . .++.+...|+.+..    . +.+||+
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~  122 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV  122 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence            57789999999999999999999 667999999999 9999999999876  2 36889998886632    2 268999


Q ss_pred             EEEccccce
Q 025428          234 VMDKGTLDA  242 (253)
Q Consensus       234 Vi~~~~l~~  242 (253)
                      |+...++..
T Consensus       123 IlasDv~Y~  131 (173)
T PF10294_consen  123 ILASDVLYD  131 (173)
T ss_dssp             EEEES--S-
T ss_pred             EEEecccch
Confidence            999887764

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.52  E-value=3.5e-07  Score=83.21  Aligned_cols=77  Identities=16%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCC-CCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~-~~fD~Vi~~~~  239 (253)
                      ..|.+|||+.+|.|.+++.+|++|...|+++|+||.+++..++|++.|++.+ +..++||..+.... +.||-|+++..
T Consensus       187 ~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~p  265 (341)
T COG2520         187 KEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGLP  265 (341)
T ss_pred             cCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCCC
Confidence            4689999999999999999999987679999999999999999999999987 99999999998776 88999998664

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.52  E-value=3e-07  Score=83.69  Aligned_cols=82  Identities=24%  Similarity=0.304  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc-------CC---CceEEEEeccCCCc------C
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GF---SCIKFLVDDVLDTK------L  227 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~-------g~---~~i~~~~~D~~~~~------~  227 (253)
                      ++.+|||+|||-|.-+.-....+...++|+|++...|+.|++|.+..       ..   -...|+.+|.....      .
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~  141 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP  141 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred             CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence            67899999999999888888887889999999999999999998321       11   14678899887542      1


Q ss_pred             C-CCccEEEEccccceecc
Q 025428          228 E-RQFQLVMDKGTLDAIGL  245 (253)
Q Consensus       228 ~-~~fD~Vi~~~~l~~i~~  245 (253)
                      . .+||+|-|...||+..-
T Consensus       142 ~~~~FDvVScQFalHY~Fe  160 (331)
T PF03291_consen  142 RSRKFDVVSCQFALHYAFE  160 (331)
T ss_dssp             TTS-EEEEEEES-GGGGGS
T ss_pred             cCCCcceeehHHHHHHhcC
Confidence            2 59999999999998754

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.49  E-value=1.1e-06  Score=76.92  Aligned_cols=80  Identities=24%  Similarity=0.329  Sum_probs=62.1

Q ss_pred             hccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC----CCCc
Q 025428          159 NDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL----ERQF  231 (253)
Q Consensus       159 l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~----~~~f  231 (253)
                      .....++.+||+.|+|+|.++..|++. | ..+|+.+|+.++.++.|+++++..|+. ++.+.+.|+.+..+    +..+
T Consensus        35 ~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~  114 (247)
T PF08704_consen   35 RLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDF  114 (247)
T ss_dssp             HTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSE
T ss_pred             HcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcc
Confidence            334578999999999999999999986 3 349999999999999999999999997 69999999975433    3679


Q ss_pred             cEEEEcc
Q 025428          232 QLVMDKG  238 (253)
Q Consensus       232 D~Vi~~~  238 (253)
                      |.|+...
T Consensus       115 DavfLDl  121 (247)
T PF08704_consen  115 DAVFLDL  121 (247)
T ss_dssp             EEEEEES
T ss_pred             cEEEEeC
Confidence            9999753

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.49  E-value=7.2e-07  Score=78.25  Aligned_cols=75  Identities=17%  Similarity=0.218  Sum_probs=65.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCC--CccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER--QFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~--~fD~Vi~~~~l  240 (253)
                      .++..||+||+|.|.++..|++++. +|+++++++.++...+++..  ...|++++++|+....++.  .++.|++|-..
T Consensus        29 ~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~~~l~~~~~vVaNlPY  105 (259)
T COG0030          29 SPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDFPSLAQPYKVVANLPY  105 (259)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcchhhcCCCEEEEcCCC
Confidence            3578999999999999999999965 89999999999999999875  2358999999999998875  78888887644

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.49  E-value=3.5e-07  Score=80.05  Aligned_cols=89  Identities=13%  Similarity=0.175  Sum_probs=72.7

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK  226 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~  226 (253)
                      ..+..++..+.+..+.++||+|||++|.-+..++.. + ..+++++|++++..+.|+++++..|+. +|+++.+|+.+..
T Consensus        65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L  144 (247)
T PLN02589         65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL  144 (247)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence            345566777777677889999999999999999875 2 238999999999999999999999976 6999999987752


Q ss_pred             C--------CCCccEEEEcc
Q 025428          227 L--------ERQFQLVMDKG  238 (253)
Q Consensus       227 ~--------~~~fD~Vi~~~  238 (253)
                      .        .++||+|+...
T Consensus       145 ~~l~~~~~~~~~fD~iFiDa  164 (247)
T PLN02589        145 DQMIEDGKYHGTFDFIFVDA  164 (247)
T ss_pred             HHHHhccccCCcccEEEecC
Confidence            1        25899988754

>PLN02366 spermidine synthase

Probab=98.44  E-value=7.8e-07  Score=80.28  Aligned_cols=77  Identities=16%  Similarity=0.331  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc--CC--CceEEEEeccCCCc--C-CCCccEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTK--L-ERQFQLV  234 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~--g~--~~i~~~~~D~~~~~--~-~~~fD~V  234 (253)
                      ...++||+||||.|.++..++++ +..+|+.+|+++.+++.|++.+...  ++  ++++++.+|....-  . +++||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            35689999999999999999988 3468999999999999999987542  22  36999999986542  2 4689999


Q ss_pred             EEccc
Q 025428          235 MDKGT  239 (253)
Q Consensus       235 i~~~~  239 (253)
                      ++...
T Consensus       170 i~D~~  174 (308)
T PLN02366        170 IVDSS  174 (308)
T ss_pred             EEcCC
Confidence            98643

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=9.4e-07  Score=73.08  Aligned_cols=76  Identities=16%  Similarity=0.171  Sum_probs=65.5

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      ...+|+||||+|..+.+|++.  +.....++|+|+.+++..++.++.++. +++.++.|+..-..+++.|+++.|..+-
T Consensus        44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~-~~~~V~tdl~~~l~~~~VDvLvfNPPYV  121 (209)
T KOG3191|consen   44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRV-HIDVVRTDLLSGLRNESVDVLVFNPPYV  121 (209)
T ss_pred             ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCC-ccceeehhHHhhhccCCccEEEECCCcC
Confidence            568999999999999999987  344788999999999999999988876 7999999998875568999999876543

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=98.43  E-value=2.4e-07  Score=79.71  Aligned_cols=117  Identities=22%  Similarity=0.287  Sum_probs=81.4

Q ss_pred             CCchhhHhHHHHHHHhccccCCCcceeecCcchhHHHHHhhhhcceeecCCCcCCccccccchHHHHhccCCCCCEEEEE
Q 025428           92 LGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDI  171 (253)
Q Consensus        92 l~~~~~Wd~~y~~~~~~~~~~~~~~e~wf~~~~~~~~~~w~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~VLDi  171 (253)
                      -....|||..|...-.+|...                ..|..+...++..                ...  ....+||+|
T Consensus        33 ~~~~k~wD~fy~~~~~rFfkd----------------R~wL~~Efpel~~----------------~~~--~~~~~ilEv   78 (264)
T KOG2361|consen   33 REASKYWDTFYKIHENRFFKD----------------RNWLLREFPELLP----------------VDE--KSAETILEV   78 (264)
T ss_pred             cchhhhhhhhhhhccccccch----------------hHHHHHhhHHhhC----------------ccc--cChhhheee
Confidence            355889999999988877522                2355332211111                000  122389999


Q ss_pred             cCCCcHHHHHHHhcCC---CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----CCCCccEEEEcccccee
Q 025428          172 GTGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMDKGTLDAI  243 (253)
Q Consensus       172 GcGtG~~~~~la~~g~---~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~~~~fD~Vi~~~~l~~i  243 (253)
                      |||.|.....+.+-..   -.|+++|.|+.+|+..+++....- .++...+.|+....     .++++|+|++..+|.+|
T Consensus        79 GCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi  157 (264)
T KOG2361|consen   79 GCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI  157 (264)
T ss_pred             ccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchhccCCCCcCccceEEEEEEEecc
Confidence            9999999999998722   289999999999999999865433 35666666665432     23899999999999998

>PRK03612 spermidine synthase; Provisional

Probab=98.42  E-value=3.6e-07  Score=88.12  Aligned_cols=77  Identities=23%  Similarity=0.324  Sum_probs=61.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHH--Hh---cCC--CceEEEEeccCCCc--CCCCcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLA--NR---DGF--SCIKFLVDDVLDTK--LERQFQ  232 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~--~~---~g~--~~i~~~~~D~~~~~--~~~~fD  232 (253)
                      ++.++|||||||+|..+..+++++. ++++++|+++++++.++++.  ..   ..+  ++++++++|..+..  .+++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            4567999999999999999998854 69999999999999999842  21   112  36999999998753  247899


Q ss_pred             EEEEccc
Q 025428          233 LVMDKGT  239 (253)
Q Consensus       233 ~Vi~~~~  239 (253)
                      +|+++..
T Consensus       376 vIi~D~~  382 (521)
T PRK03612        376 VIIVDLP  382 (521)
T ss_pred             EEEEeCC
Confidence            9998743

>TIGR00417 speE spermidine synthase

Probab=98.41  E-value=7.7e-07  Score=78.78  Aligned_cols=76  Identities=26%  Similarity=0.342  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcC----CCceEEEEeccCCCc--CCCCccEEEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVMD  236 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g----~~~i~~~~~D~~~~~--~~~~fD~Vi~  236 (253)
                      ...+||+||||+|.++..+++++ ..+++++|+++++++.+++.+...+    ..+++++.+|..+..  .+++||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            44599999999999999998884 5689999999999999999875432    136888888886642  2478999998


Q ss_pred             ccc
Q 025428          237 KGT  239 (253)
Q Consensus       237 ~~~  239 (253)
                      ...
T Consensus       152 D~~  154 (270)
T TIGR00417       152 DST  154 (270)
T ss_pred             eCC
Confidence            654

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=98.41  E-value=5.4e-07  Score=77.85  Aligned_cols=71  Identities=20%  Similarity=0.314  Sum_probs=60.7

Q ss_pred             CEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---CC-CCccEEEE
Q 025428          166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LE-RQFQLVMD  236 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---~~-~~fD~Vi~  236 (253)
                      ..+||||||.|.++..+|.+ +-..++|||+....+..|.+.+.+.++.|+.++++|+.++.   ++ ++.|-|..
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i  125 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYI  125 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEE
Confidence            58999999999999999998 44489999999999999999999999999999999998763   12 35555554

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.39  E-value=6.1e-07  Score=82.97  Aligned_cols=73  Identities=12%  Similarity=0.202  Sum_probs=65.0

Q ss_pred             CEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC--CCCccEEEEcc
Q 025428          166 WSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKG  238 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~--~~~fD~Vi~~~  238 (253)
                      .+|||+.||+|..++.++..  |..+|+++|+|+.+++.+++|++.+++.+++++++|+..+..  .++||+|....
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP  122 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP  122 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC
Confidence            58999999999999999998  678999999999999999999999998889999999987643  26799998754

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.39  E-value=1.5e-06  Score=76.08  Aligned_cols=75  Identities=21%  Similarity=0.262  Sum_probs=63.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      ++...||++|.|||.++..|.+.|. +|+++++++.|+....++.+..... ..++++||+...+++ .||.++++-.
T Consensus        57 k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~P-~fd~cVsNlP  132 (315)
T KOG0820|consen   57 KPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDLP-RFDGCVSNLP  132 (315)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCCc-ccceeeccCC
Confidence            6788999999999999999999965 9999999999999999997644333 499999999887654 6899988553

>PRK01581 speE spermidine synthase; Validated

Probab=98.39  E-value=6.9e-07  Score=81.88  Aligned_cols=76  Identities=24%  Similarity=0.344  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHH-----HhcCC--CceEEEEeccCCCc--CCCCcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLA-----NRDGF--SCIKFLVDDVLDTK--LERQFQ  232 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~-----~~~g~--~~i~~~~~D~~~~~--~~~~fD  232 (253)
                      ....+||+||||+|..+..+++++ ..+|++||++++|++.|++..     ....+  ++++++.+|+.+..  ..++||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            456799999999999999999873 469999999999999999621     11122  47999999998753  237899


Q ss_pred             EEEEcc
Q 025428          233 LVMDKG  238 (253)
Q Consensus       233 ~Vi~~~  238 (253)
                      +|++..
T Consensus       229 VIIvDl  234 (374)
T PRK01581        229 VIIIDF  234 (374)
T ss_pred             EEEEcC
Confidence            999873

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=98.35  E-value=2.3e-06  Score=78.53  Aligned_cols=78  Identities=23%  Similarity=0.248  Sum_probs=67.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCC----------------------------------------cEEEEeCCHHHHHH
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFS----------------------------------------DLTGVDYSEDAINL  202 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~----------------------------------------~v~gvD~s~~~l~~  202 (253)
                      .++..++|.-||+|.+++..|-.+..                                        .++|+|+++.+|+.
T Consensus       190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~  269 (381)
T COG0116         190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG  269 (381)
T ss_pred             CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence            45679999999999999998877421                                        27799999999999


Q ss_pred             HHHHHHhcCCCc-eEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          203 AQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       203 ar~~~~~~g~~~-i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      |+.|+...|+.. |+|.++|+..++.+ +.+|+||+|...
T Consensus       270 Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPY  309 (381)
T COG0116         270 AKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPY  309 (381)
T ss_pred             HHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCc
Confidence            999999999975 99999999999876 899999998654

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=98.33  E-value=7e-07  Score=74.29  Aligned_cols=71  Identities=17%  Similarity=0.228  Sum_probs=64.8

Q ss_pred             CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK  237 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~  237 (253)
                      ...+.|+|+|+|.++...++. +++|++++.+|...+.|.+|+...|..|++++.+|+....+ ...|+|+|-
T Consensus        33 ~d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f-e~ADvvicE  103 (252)
T COG4076          33 EDTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF-ENADVVICE  103 (252)
T ss_pred             hhceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc-cccceeHHH
Confidence            368999999999999999988 77999999999999999999988898899999999999887 568888873

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.32  E-value=2.8e-06  Score=73.60  Aligned_cols=72  Identities=19%  Similarity=0.247  Sum_probs=59.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .+..+|||||+|+|.++..+++. +..+++.+|. |++++.+++      ..+|+++.+|+. -+++. +|+|+...+||
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f-~~~P~-~D~~~l~~vLh  169 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFF-DPLPV-ADVYLLRHVLH  169 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH------TTTEEEEES-TT-TCCSS-ESEEEEESSGG
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc------ccccccccccHH-hhhcc-ccceeeehhhh
Confidence            45579999999999999999988 4449999999 889998888      358999999999 45666 99999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ..
T Consensus       170 ~~  171 (241)
T PF00891_consen  170 DW  171 (241)
T ss_dssp             GS
T ss_pred             hc
Confidence            76

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.27  E-value=5.6e-06  Score=82.60  Aligned_cols=90  Identities=28%  Similarity=0.264  Sum_probs=69.8

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-------------C------------------------------CC
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-------------G------------------------------FS  188 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-------------g------------------------------~~  188 (253)
                      .+.|+.+..-..++..++|.+||+|.+++..+..             +                              ..
T Consensus       178 Aaa~l~~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~  257 (702)
T PRK11783        178 AAAILLRSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPS  257 (702)
T ss_pred             HHHHHHHcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCc
Confidence            3444433322245789999999999999888752             0                              11


Q ss_pred             cEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCC---CCccEEEEccccc
Q 025428          189 DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE---RQFQLVMDKGTLD  241 (253)
Q Consensus       189 ~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~---~~fD~Vi~~~~l~  241 (253)
                      +++|+|+++.+++.|++|+..+|+.+ +.+.++|+.+++.+   ++||+|++|..+-
T Consensus       258 ~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg  314 (702)
T PRK11783        258 KFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYG  314 (702)
T ss_pred             eEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCc
Confidence            58999999999999999999999874 99999999988643   4699999987653

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=98.25  E-value=3.8e-06  Score=66.55  Aligned_cols=59  Identities=17%  Similarity=0.232  Sum_probs=52.0

Q ss_pred             EEEEEcCCCcHHHHHHHhcCCC-cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC
Q 025428          167 SVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  225 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~~g~~-~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~  225 (253)
                      ++||+|||+|.++..++..+.. +++++|.++.+++.++++++.+++.++++++..+.+-
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~   60 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR   60 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence            4899999999999999988553 7999999999999999999988887888888777653

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=98.23  E-value=6.1e-06  Score=78.51  Aligned_cols=91  Identities=14%  Similarity=0.115  Sum_probs=74.1

Q ss_pred             cccchHHHHhc--cCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC
Q 025428          150 DLKSEPVEEND--KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  225 (253)
Q Consensus       150 ~~~~~l~~~l~--~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~  225 (253)
                      +..+.+...+.  .+.++.+|||+|||.|.-+..++..  +...++++|+++..++..++++++.|+.|+.+.+.|...+
T Consensus        97 d~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~  176 (470)
T PRK11933         97 EASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVF  176 (470)
T ss_pred             CHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhh
Confidence            44555554444  5578899999999999999999987  2348999999999999999999999999999999998876


Q ss_pred             c--CCCCccEEEEcccc
Q 025428          226 K--LERQFQLVMDKGTL  240 (253)
Q Consensus       226 ~--~~~~fD~Vi~~~~l  240 (253)
                      .  +++.||.|+.....
T Consensus       177 ~~~~~~~fD~ILvDaPC  193 (470)
T PRK11933        177 GAALPETFDAILLDAPC  193 (470)
T ss_pred             hhhchhhcCeEEEcCCC
Confidence            3  35789999975543

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=98.23  E-value=2.5e-06  Score=76.28  Aligned_cols=82  Identities=23%  Similarity=0.287  Sum_probs=66.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC-C-----CceEEEEeccCCCc------CCC-
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-F-----SCIKFLVDDVLDTK------LER-  229 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g-~-----~~i~~~~~D~~~~~------~~~-  229 (253)
                      .++..++|+|||.|.-++..-+.|...++|+||.+-.|+.|+++.+... .     -.+.|+.+|.....      ++. 
T Consensus       116 ~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~dp  195 (389)
T KOG1975|consen  116 KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFKDP  195 (389)
T ss_pred             ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCCCC
Confidence            3678899999999999999988888999999999999999999886431 1     13789999986532      233 


Q ss_pred             CccEEEEccccceec
Q 025428          230 QFQLVMDKGTLDAIG  244 (253)
Q Consensus       230 ~fD~Vi~~~~l~~i~  244 (253)
                      +||+|-|..++|+..
T Consensus       196 ~fDivScQF~~HYaF  210 (389)
T KOG1975|consen  196 RFDIVSCQFAFHYAF  210 (389)
T ss_pred             CcceeeeeeeEeeee
Confidence            499999999999864

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=98.20  E-value=6.3e-06  Score=65.87  Aligned_cols=74  Identities=23%  Similarity=0.404  Sum_probs=58.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHh-----cCCCcEEEEeCCHHHHHHHHHHHHhcC--C-CceEEEEeccCCCcCCCCccEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSK-----QGFSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVDDVLDTKLERQFQLV  234 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~-----~g~~~v~gvD~s~~~l~~ar~~~~~~g--~-~~i~~~~~D~~~~~~~~~fD~V  234 (253)
                      .+...|+|+|||.|.++..++.     ....+|+|+|.++..++.++++.+..+  + .++.+..+++.........+++
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL  103 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence            4667999999999999999999     533499999999999999999988776  4 3577888777665444556666


Q ss_pred             EE
Q 025428          235 MD  236 (253)
Q Consensus       235 i~  236 (253)
                      +.
T Consensus       104 vg  105 (141)
T PF13679_consen  104 VG  105 (141)
T ss_pred             EE
Confidence            64

>KOG2730 consensus Methylase [General function prediction only]

Probab=98.18  E-value=1.9e-06  Score=73.32  Aligned_cols=74  Identities=22%  Similarity=0.217  Sum_probs=62.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc----CC-CCccEEEEc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK----LE-RQFQLVMDK  237 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~----~~-~~fD~Vi~~  237 (253)
                      ....|+|..||.|..++.++.++. .|++||+++.-|..|+.|++-.|++ +|+|++||+.++-    +. ..+|+|+..
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s  172 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS  172 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence            446899999999999999999966 9999999999999999999999998 5999999998863    22 345566654


Q ss_pred             c
Q 025428          238 G  238 (253)
Q Consensus       238 ~  238 (253)
                      .
T Consensus       173 p  173 (263)
T KOG2730|consen  173 P  173 (263)
T ss_pred             C
Confidence            3

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=98.16  E-value=5.1e-06  Score=74.68  Aligned_cols=93  Identities=18%  Similarity=0.241  Sum_probs=64.0

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--------CCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEE
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--------GFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLV  219 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--------g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~  219 (253)
                      .+...+.+++ ...++.+|||.+||+|.++..+.+.        ...+++|+|+++.++..|+-++...++.  +..+.+
T Consensus        33 ~i~~l~~~~~-~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~  111 (311)
T PF02384_consen   33 EIVDLMVKLL-NPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ  111 (311)
T ss_dssp             HHHHHHHHHH-TT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred             HHHHHHHhhh-hccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence            3444445555 3346678999999999999888762        2348999999999999999988766653  357899


Q ss_pred             eccCCCcC---CCCccEEEEcccccee
Q 025428          220 DDVLDTKL---ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       220 ~D~~~~~~---~~~fD~Vi~~~~l~~i  243 (253)
                      +|....+.   ...||+|+++..+-..
T Consensus       112 ~d~l~~~~~~~~~~~D~ii~NPPf~~~  138 (311)
T PF02384_consen  112 GDSLENDKFIKNQKFDVIIGNPPFGSK  138 (311)
T ss_dssp             S-TTTSHSCTST--EEEEEEE--CTCE
T ss_pred             cccccccccccccccccccCCCCcccc
Confidence            99876654   2689999998877654

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.15  E-value=9.8e-06  Score=69.99  Aligned_cols=46  Identities=28%  Similarity=0.395  Sum_probs=42.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHH
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN  208 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~  208 (253)
                      .....+|||||.+|.++..+++. |...|+|+||++..|..|++++.
T Consensus        57 f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r  103 (288)
T KOG2899|consen   57 FEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIR  103 (288)
T ss_pred             cCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcc
Confidence            46679999999999999999998 77799999999999999999864

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=98.12  E-value=1.6e-05  Score=66.66  Aligned_cols=74  Identities=19%  Similarity=0.282  Sum_probs=62.6

Q ss_pred             EEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      +++|||+|.|.-++.++-. +..+++.+|.+..-+...+.-....|++|++++++.+++.....+||+|++..+-
T Consensus        51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRAv~  125 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARAVA  125 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEESSS
T ss_pred             eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeehhc
Confidence            8999999999999999876 3448999999999999999999999999999999999994445899999997753

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.11  E-value=3.8e-06  Score=70.31  Aligned_cols=75  Identities=21%  Similarity=0.346  Sum_probs=66.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      -.+++|||+|+|+|..++..++.|+..|+..|+.+..+...+-|++.||+ +|.+...|+.-  .+..||+++...++
T Consensus        78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g--~~~~~Dl~LagDlf  152 (218)
T COG3897          78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG--SPPAFDLLLAGDLF  152 (218)
T ss_pred             cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC--CCcceeEEEeecee
Confidence            36789999999999999999999999999999999999999999999986 89999999877  45789999986654

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=98.07  E-value=5.7e-06  Score=67.53  Aligned_cols=53  Identities=21%  Similarity=0.477  Sum_probs=45.2

Q ss_pred             EEEeCCHHHHHHHHHHHHhcC---CCceEEEEeccCCCcCC-CCccEEEEcccccee
Q 025428          191 TGVDYSEDAINLAQSLANRDG---FSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAI  243 (253)
Q Consensus       191 ~gvD~s~~~l~~ar~~~~~~g---~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~i  243 (253)
                      +|+|+|++||+.|+++.+..+   ..+++++++|+.+++++ ++||+|++..++|++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~   57 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNV   57 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcC
Confidence            589999999999988765322   34799999999999876 799999999999987

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=98.06  E-value=3.4e-06  Score=72.35  Aligned_cols=83  Identities=20%  Similarity=0.223  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      +....++|||||.|.+...+...|..+++-+|.|-.|++.++..- ..++ .+..+.+|-+.+++. +++|+|++...+|
T Consensus        71 k~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~q-dp~i-~~~~~v~DEE~Ldf~ens~DLiisSlslH  148 (325)
T KOG2940|consen   71 KSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQ-DPSI-ETSYFVGDEEFLDFKENSVDLIISSLSLH  148 (325)
T ss_pred             hhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccC-CCce-EEEEEecchhcccccccchhhhhhhhhhh
Confidence            355689999999999999999999889999999999999998642 2333 467888999999886 8999999999999


Q ss_pred             eeccCC
Q 025428          242 AIGLHP  247 (253)
Q Consensus       242 ~i~~~p  247 (253)
                      |+.--|
T Consensus       149 W~NdLP  154 (325)
T KOG2940|consen  149 WTNDLP  154 (325)
T ss_pred             hhccCc
Confidence            985433

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=98.05  E-value=2.6e-05  Score=69.87  Aligned_cols=78  Identities=19%  Similarity=0.310  Sum_probs=48.5

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhc-CCC-ceEEEEeccC----CCcC--CCCccEE
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-GFS-CIKFLVDDVL----DTKL--ERQFQLV  234 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~-g~~-~i~~~~~D~~----~~~~--~~~fD~V  234 (253)
                      ..++||||||...+=-.|+.+  |+ +++|+|+++..++.|+++++.+ ++. +|+++...-.    ....  .+.||++
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence            468999999988774444333  66 9999999999999999999999 886 4888766422    2111  2689999


Q ss_pred             EEcccccee
Q 025428          235 MDKGTLDAI  243 (253)
Q Consensus       235 i~~~~l~~i  243 (253)
                      +|+..||.-
T Consensus       182 mCNPPFy~s  190 (299)
T PF05971_consen  182 MCNPPFYSS  190 (299)
T ss_dssp             EE-----SS
T ss_pred             ecCCccccC
Confidence            999998864

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.03  E-value=2.1e-05  Score=69.34  Aligned_cols=84  Identities=25%  Similarity=0.269  Sum_probs=64.8

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCC---
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER---  229 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~---  229 (253)
                      ..+++.+.. .++..|||||+|+|.++..|++.+ ++++++|+++.+++..+++...  -.+++++++|+..+....   
T Consensus        20 ~~Iv~~~~~-~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~--~~~~~vi~~D~l~~~~~~~~~   95 (262)
T PF00398_consen   20 DKIVDALDL-SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFAS--NPNVEVINGDFLKWDLYDLLK   95 (262)
T ss_dssp             HHHHHHHTC-GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTT--CSSEEEEES-TTTSCGGGHCS
T ss_pred             HHHHHhcCC-CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhh--cccceeeecchhccccHHhhc
Confidence            334444432 367899999999999999999996 6999999999999999988762  248999999999987543   


Q ss_pred             -CccEEEEcccc
Q 025428          230 -QFQLVMDKGTL  240 (253)
Q Consensus       230 -~fD~Vi~~~~l  240 (253)
                       ....|+.+-..
T Consensus        96 ~~~~~vv~NlPy  107 (262)
T PF00398_consen   96 NQPLLVVGNLPY  107 (262)
T ss_dssp             SSEEEEEEEETG
T ss_pred             CCceEEEEEecc
Confidence             55667765443

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PLN02823 spermine synthase

Probab=98.02  E-value=1.4e-05  Score=73.01  Aligned_cols=74  Identities=12%  Similarity=0.348  Sum_probs=61.4

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcC--C--CceEEEEeccCCCcC--CCCccEEEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG--F--SCIKFLVDDVLDTKL--ERQFQLVMD  236 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g--~--~~i~~~~~D~~~~~~--~~~fD~Vi~  236 (253)
                      ..++||.||+|.|..+..++++ +..+|+.+|+++++++.|++.+...+  +  ++++++.+|....-.  .++||+|+.
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            4579999999999999998886 45689999999999999999875431  2  479999999988632  378999998


Q ss_pred             c
Q 025428          237 K  237 (253)
Q Consensus       237 ~  237 (253)
                      .
T Consensus       183 D  183 (336)
T PLN02823        183 D  183 (336)
T ss_pred             c
Confidence            6

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=98.01  E-value=1.6e-05  Score=74.84  Aligned_cols=84  Identities=32%  Similarity=0.452  Sum_probs=72.9

Q ss_pred             EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccceecc
Q 025428          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAIGL  245 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~i~~  245 (253)
                      ++|-+|||+-.++..+-+.|+..|+.+|+|+-.++....+.. ....-+.+...|+..+.++ ++||+|+..+++|++..
T Consensus        51 ~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~-~~~~~~~~~~~d~~~l~fedESFdiVIdkGtlDal~~  129 (482)
T KOG2352|consen   51 KILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNA-KERPEMQMVEMDMDQLVFEDESFDIVIDKGTLDALFE  129 (482)
T ss_pred             eeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccc-cCCcceEEEEecchhccCCCcceeEEEecCccccccC
Confidence            899999999999999999999999999999998888877654 2223589999999999987 99999999999999977


Q ss_pred             CCCCCC
Q 025428          246 HPDGPL  251 (253)
Q Consensus       246 ~pd~~~  251 (253)
                      ..+.++
T Consensus       130 de~a~~  135 (482)
T KOG2352|consen  130 DEDALL  135 (482)
T ss_pred             Cchhhh
Confidence            666544

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=98.01  E-value=1.3e-05  Score=68.33  Aligned_cols=81  Identities=20%  Similarity=0.210  Sum_probs=57.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~  242 (253)
                      ...+.||+|+|.|+++..+...-+.+|-.+|.++..++.|++.+...+-.-.++.+.-+.++.++ ++||+|++..++-|
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lgh  134 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGH  134 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-GGG
T ss_pred             CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHhhcc
Confidence            45799999999999998776555889999999999999999876553222367888888888665 79999999999988


Q ss_pred             ec
Q 025428          243 IG  244 (253)
Q Consensus       243 i~  244 (253)
                      +.
T Consensus       135 LT  136 (218)
T PF05891_consen  135 LT  136 (218)
T ss_dssp             S-
T ss_pred             CC
Confidence            73

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=97.98  E-value=6.7e-05  Score=69.09  Aligned_cols=104  Identities=16%  Similarity=0.113  Sum_probs=83.4

Q ss_pred             ccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCC---CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC
Q 025428          149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF---SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  225 (253)
Q Consensus       149 ~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~---~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~  225 (253)
                      ++..+.+...+..+.++.+|||++++.|.=+..++....   ..|+++|+++.-++..++|+++.|+.|+.+++.|...+
T Consensus       141 Qd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~  220 (355)
T COG0144         141 QDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRL  220 (355)
T ss_pred             cCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccc
Confidence            356677777788888999999999999999999998832   25799999999999999999999999988998888765


Q ss_pred             c---CC-CCccEEEEccccceecc---CCCCCCC
Q 025428          226 K---LE-RQFQLVMDKGTLDAIGL---HPDGPLK  252 (253)
Q Consensus       226 ~---~~-~~fD~Vi~~~~l~~i~~---~pd~~~~  252 (253)
                      +   .. ++||.|+........++   +|+.++.
T Consensus       221 ~~~~~~~~~fD~iLlDaPCSg~G~irr~Pd~~~~  254 (355)
T COG0144         221 AELLPGGEKFDRILLDAPCSGTGVIRRDPDVKWR  254 (355)
T ss_pred             cccccccCcCcEEEECCCCCCCcccccCcccccc
Confidence            4   22 36999999775554444   5776554

>PRK10742 putative methyltransferase; Provisional

Probab=97.97  E-value=3.6e-05  Score=67.13  Aligned_cols=79  Identities=15%  Similarity=0.142  Sum_probs=64.5

Q ss_pred             CCCC--EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc------C--C-CceEEEEeccCCCcC--CC
Q 025428          163 LSSW--SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------G--F-SCIKFLVDDVLDTKL--ER  229 (253)
Q Consensus       163 ~~~~--~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~------g--~-~~i~~~~~D~~~~~~--~~  229 (253)
                      .++.  +|||+-+|+|..++.++..|+ +|+++|.++.+....++++++.      +  + .+++++++|..++..  ..
T Consensus        85 k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~  163 (250)
T PRK10742         85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP  163 (250)
T ss_pred             CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence            4555  899999999999999999988 5999999999999999988763      2  2 469999999877642  35


Q ss_pred             CccEEEEccccce
Q 025428          230 QFQLVMDKGTLDA  242 (253)
Q Consensus       230 ~fD~Vi~~~~l~~  242 (253)
                      +||+|++...+-+
T Consensus       164 ~fDVVYlDPMfp~  176 (250)
T PRK10742        164 RPQVVYLDPMFPH  176 (250)
T ss_pred             CCcEEEECCCCCC
Confidence            7999998665544

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=2.3e-05  Score=66.38  Aligned_cols=89  Identities=17%  Similarity=0.309  Sum_probs=69.7

Q ss_pred             cccchHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHhc-CCC--cEEEEeCCHHHHHHHHHHHHhcC--------CC--ce
Q 025428          150 DLKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQ-GFS--DLTGVDYSEDAINLAQSLANRDG--------FS--CI  215 (253)
Q Consensus       150 ~~~~~l~~~l~~-~~~~~~VLDiGcGtG~~~~~la~~-g~~--~v~gvD~s~~~l~~ar~~~~~~g--------~~--~i  215 (253)
                      .+.+.+++.|.. +.++.+.||+|+|+|.++..++.. |..  .++|||.-++.++.+++++...-        ++  ++
T Consensus        67 ~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l  146 (237)
T KOG1661|consen   67 HMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGEL  146 (237)
T ss_pred             HHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCce
Confidence            445556666653 368899999999999999999865 332  45999999999999999986542        22  58


Q ss_pred             EEEEeccCCCcCC-CCccEEEEcc
Q 025428          216 KFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       216 ~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      .++.+|.+....+ .+||.|.+-.
T Consensus       147 ~ivvGDgr~g~~e~a~YDaIhvGA  170 (237)
T KOG1661|consen  147 SIVVGDGRKGYAEQAPYDAIHVGA  170 (237)
T ss_pred             EEEeCCccccCCccCCcceEEEcc
Confidence            8999999988665 8999998753

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.97  E-value=2.4e-05  Score=67.01  Aligned_cols=75  Identities=17%  Similarity=0.251  Sum_probs=65.5

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCC-ccEEEEccc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQLVMDKGT  239 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~-fD~Vi~~~~  239 (253)
                      ..+++|||+|.|.=++.++-. ...+|+-+|....-+...+......+++|++++++.++++..... ||+|++..+
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRAv  144 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRAV  144 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeehc
Confidence            579999999999999998833 334799999999999999999999999999999999999875544 999999764

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=97.94  E-value=7e-05  Score=66.48  Aligned_cols=80  Identities=21%  Similarity=0.326  Sum_probs=67.9

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-C--CCcEEEEeCCHHHHHHHHHHHHhcCCCce-EEEEeccCCCc----CCCCccEEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-G--FSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTK----LERQFQLVM  235 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i-~~~~~D~~~~~----~~~~fD~Vi  235 (253)
                      ...+||||.||.|+..+-.... +  ..+|...|+|+..++.+++.++..|+.++ +|.++|+.+..    .....++++
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i  214 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI  214 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence            5569999999999998777765 3  25899999999999999999999999986 99999998863    234579999


Q ss_pred             Ecccccee
Q 025428          236 DKGTLDAI  243 (253)
Q Consensus       236 ~~~~l~~i  243 (253)
                      .++.++.+
T Consensus       215 VsGL~ElF  222 (311)
T PF12147_consen  215 VSGLYELF  222 (311)
T ss_pred             EecchhhC
Confidence            99988876

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.92  E-value=2.5e-05  Score=75.47  Aligned_cols=80  Identities=16%  Similarity=0.191  Sum_probs=60.2

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC---------CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc------CC
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG---------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LE  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g---------~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~------~~  228 (253)
                      ...+|||.|||+|.++..++.+.         ..+++|+|+++.++..++.++...+...+.+.+.|.....      ..
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~  110 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL  110 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence            34699999999999999888652         1378999999999999999987665224556666644321      12


Q ss_pred             CCccEEEEcccccee
Q 025428          229 RQFQLVMDKGTLDAI  243 (253)
Q Consensus       229 ~~fD~Vi~~~~l~~i  243 (253)
                      +.||+|+.|..+--+
T Consensus       111 ~~fD~IIgNPPy~~~  125 (524)
T TIGR02987       111 DLFDIVITNPPYGRL  125 (524)
T ss_pred             CcccEEEeCCCcccc
Confidence            589999999877655

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.86  E-value=4e-05  Score=64.96  Aligned_cols=77  Identities=16%  Similarity=0.161  Sum_probs=61.5

Q ss_pred             EEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCce-EEEEeccCCCcC---------CCCccEEE
Q 025428          167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKL---------ERQFQLVM  235 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i-~~~~~D~~~~~~---------~~~fD~Vi  235 (253)
                      +||+||||||-.+.+++++ ..-...-.|.++..+...++.+...+++|+ .-+..|+...+.         .++||+|+
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~  107 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF  107 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence            5999999999999999998 333677899999998888888888887763 455667766532         25899999


Q ss_pred             Ecccccee
Q 025428          236 DKGTLDAI  243 (253)
Q Consensus       236 ~~~~l~~i  243 (253)
                      +..++|-+
T Consensus       108 ~~N~lHI~  115 (204)
T PF06080_consen  108 CINMLHIS  115 (204)
T ss_pred             ehhHHHhc
Confidence            99999865

The function of this family is unknown.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.86  E-value=5.4e-05  Score=64.49  Aligned_cols=71  Identities=25%  Similarity=0.317  Sum_probs=55.1

Q ss_pred             EEEEcCCCcHHHHHHHhcCCC-cEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcc
Q 025428          168 VLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       168 VLDiGcGtG~~~~~la~~g~~-~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      |.||||-=|.+...|.+.|.. +++++|+++.-++.|+++++..|+. +++++.+|-.+...+ +..|+|+..|
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG   74 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG   74 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec
Confidence            689999999999999999654 8999999999999999999999986 499999997664333 3478888654

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=97.86  E-value=3e-05  Score=66.06  Aligned_cols=78  Identities=21%  Similarity=0.312  Sum_probs=51.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHH-------hcCC--CceEEEEeccCCCcCC----
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLAN-------RDGF--SCIKFLVDDVLDTKLE----  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~-------~~g~--~~i~~~~~D~~~~~~~----  228 (253)
                      .++...+|||||.|......+-. ++.+.+||++.+...+.|+...+       ..|.  .++++.++|+.+.+..    
T Consensus        41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~  120 (205)
T PF08123_consen   41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW  120 (205)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence            57789999999999998877765 78789999999998887776432       2333  3588999999876431    


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      ...|+|++|.++
T Consensus       121 s~AdvVf~Nn~~  132 (205)
T PF08123_consen  121 SDADVVFVNNTC  132 (205)
T ss_dssp             HC-SEEEE--TT
T ss_pred             cCCCEEEEeccc
Confidence            457999998753

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.85  E-value=2.9e-05  Score=67.85  Aligned_cols=70  Identities=24%  Similarity=0.372  Sum_probs=53.9

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-CCCCccEEEEccccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-~~~~fD~Vi~~~~l~~  242 (253)
                      ...++||||+|.|..+..++.. +++|++.|.|+.|....++    .|+   +++  +..+.. .+.+||+|.|.++|+.
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~----kg~---~vl--~~~~w~~~~~~fDvIscLNvLDR  163 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSK----KGF---TVL--DIDDWQQTDFKFDVISCLNVLDR  163 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHh----CCC---eEE--ehhhhhccCCceEEEeehhhhhc
Confidence            4578999999999999999998 8899999999999765554    354   332  222222 2368999999999986


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      .
T Consensus       164 c  164 (265)
T PF05219_consen  164 C  164 (265)
T ss_pred             c
Confidence            4

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.82  E-value=3.8e-05  Score=73.88  Aligned_cols=73  Identities=15%  Similarity=0.134  Sum_probs=60.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--C-CCCccEEEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLVMD  236 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~-~~~fD~Vi~  236 (253)
                      ....+||||||.|.++..+|.. .-..++|+|+....+..+.+++...++.|+.++++|+..+.  + ++++|.|+.
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i  423 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYI  423 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEE
Confidence            4568999999999999999988 33489999999999999999988889999999988875432  2 356666664

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.79  E-value=6.9e-05  Score=68.16  Aligned_cols=69  Identities=14%  Similarity=0.176  Sum_probs=54.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-CCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-~~~fD~Vi~~~~  239 (253)
                      .++.++|||||++|.++..+.++|. +|++||..+ |-...    .  .-.+|..+.+|...... .+.+|+++|..+
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~-l~~~L----~--~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv  279 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGP-MAQSL----M--DTGQVEHLRADGFKFRPPRKNVDWLVCDMV  279 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechh-cCHhh----h--CCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence            5788999999999999999999988 999999665 22211    1  11468888888877655 578999999764

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.77  E-value=7.9e-05  Score=66.45  Aligned_cols=74  Identities=26%  Similarity=0.344  Sum_probs=62.3

Q ss_pred             CEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcC----CCceEEEEeccCCCcC--CCCccEEEEcc
Q 025428          166 WSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTKL--ERQFQLVMDKG  238 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g----~~~i~~~~~D~~~~~~--~~~fD~Vi~~~  238 (253)
                      ++||-||.|.|..+..++++. ..+++.|||++..++.|++.+....    -++++++.+|..++--  +.+||+|+...
T Consensus        78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~  157 (282)
T COG0421          78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS  157 (282)
T ss_pred             CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence            699999999999999999994 5699999999999999999875432    2478999999988743  35899999865


Q ss_pred             c
Q 025428          239 T  239 (253)
Q Consensus       239 ~  239 (253)
                      +
T Consensus       158 t  158 (282)
T COG0421         158 T  158 (282)
T ss_pred             C
Confidence            4

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.69  E-value=0.00014  Score=59.61  Aligned_cols=76  Identities=24%  Similarity=0.410  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCC--cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C-CCCccEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L-ERQFQLV  234 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~--~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~-~~~fD~V  234 (253)
                      .++..||++|.|||-++..+.++|..  .++++++|++......++.     +.++++.||+.++.     . ...||.|
T Consensus        47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~ii~gda~~l~~~l~e~~gq~~D~v  121 (194)
T COG3963          47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVNIINGDAFDLRTTLGEHKGQFFDSV  121 (194)
T ss_pred             ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCccccccchhhHHHHHhhcCCCeeeeE
Confidence            56779999999999999999999754  8999999999998888764     35668999998875     1 2679999


Q ss_pred             EEcccccee
Q 025428          235 MDKGTLDAI  243 (253)
Q Consensus       235 i~~~~l~~i  243 (253)
                      +|.-.+-.+
T Consensus       122 iS~lPll~~  130 (194)
T COG3963         122 ISGLPLLNF  130 (194)
T ss_pred             EeccccccC
Confidence            996655544

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.65  E-value=0.0001  Score=65.55  Aligned_cols=81  Identities=23%  Similarity=0.213  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      ....+|||+|||+|..+..+...  ...+++++|.|+.|++.++..++...-. ...+......+...-...|+|++.++
T Consensus        32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~  111 (274)
T PF09243_consen   32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV  111 (274)
T ss_pred             CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence            35579999999999877766654  3458999999999999999977543211 11111111111111134499999999


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      |.-+
T Consensus       112 L~EL  115 (274)
T PF09243_consen  112 LNEL  115 (274)
T ss_pred             hhcC
Confidence            9877

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=97.61  E-value=0.00015  Score=64.80  Aligned_cols=92  Identities=17%  Similarity=0.105  Sum_probs=73.9

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-  226 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-  226 (253)
                      ...+.+...+..+.++.+|||+++|.|.-+..++...  ...++++|+++..+...+.++++.|+.++...+.|..... 
T Consensus        71 d~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~  150 (283)
T PF01189_consen   71 DESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDP  150 (283)
T ss_dssp             HHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHH
T ss_pred             ccccccccccccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccc
Confidence            3445555555666788999999999999999999872  3489999999999999999999999999999988888763 


Q ss_pred             --CCCCccEEEEccccc
Q 025428          227 --LERQFQLVMDKGTLD  241 (253)
Q Consensus       227 --~~~~fD~Vi~~~~l~  241 (253)
                        ....||.|+.....-
T Consensus       151 ~~~~~~fd~VlvDaPCS  167 (283)
T PF01189_consen  151 KKPESKFDRVLVDAPCS  167 (283)
T ss_dssp             HHHTTTEEEEEEECSCC
T ss_pred             cccccccchhhcCCCcc
Confidence              234699999865443

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.59  E-value=0.00012  Score=64.09  Aligned_cols=76  Identities=18%  Similarity=0.236  Sum_probs=59.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCC----CceEEEEeccCCCcC--CC-CccEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGF----SCIKFLVDDVLDTKL--ER-QFQLV  234 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~----~~i~~~~~D~~~~~~--~~-~fD~V  234 (253)
                      ...++||-||.|.|..+..+.++. ..++++||+++.+++.|++-+.....    ++++++.+|...+-.  .+ +||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            367899999999999999999884 56999999999999999997654321    379999999977642  24 89999


Q ss_pred             EEcc
Q 025428          235 MDKG  238 (253)
Q Consensus       235 i~~~  238 (253)
                      +...
T Consensus       155 i~D~  158 (246)
T PF01564_consen  155 IVDL  158 (246)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            9743

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.58  E-value=0.00035  Score=59.12  Aligned_cols=80  Identities=21%  Similarity=0.330  Sum_probs=48.6

Q ss_pred             CCCEEEEEcCCCcH----HHHHHHhc---CCC---cEEEEeCCHHHHHHHHHHH--------------Hh-----cC--C
Q 025428          164 SSWSVLDIGTGNGL----LLQELSKQ---GFS---DLTGVDYSEDAINLAQSLA--------------NR-----DG--F  212 (253)
Q Consensus       164 ~~~~VLDiGcGtG~----~~~~la~~---g~~---~v~gvD~s~~~l~~ar~~~--------------~~-----~g--~  212 (253)
                      +.-+|+-.||+||-    +++.+...   ...   +++|+|+|+.+|+.|++-.              ++     .+  .
T Consensus        31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~  110 (196)
T PF01739_consen   31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY  110 (196)
T ss_dssp             S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred             CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence            44699999999997    34444441   111   8999999999999998711              00     01  1


Q ss_pred             -------CceEEEEeccCC-CcCCCCccEEEEcccccee
Q 025428          213 -------SCIKFLVDDVLD-TKLERQFQLVMDKGTLDAI  243 (253)
Q Consensus       213 -------~~i~~~~~D~~~-~~~~~~fD~Vi~~~~l~~i  243 (253)
                             .+|+|.+.|+.+ .+..+.||+|+|.+||-++
T Consensus       111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF  149 (196)
T PF01739_consen  111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYF  149 (196)
T ss_dssp             TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS
T ss_pred             eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEe
Confidence                   258999999999 3344899999999999876

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.58  E-value=0.00033  Score=60.15  Aligned_cols=86  Identities=15%  Similarity=0.216  Sum_probs=70.2

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc--
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--  226 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~--  226 (253)
                      ...++..+-+....+++||||.=||.-+..+|..  ...+|+++|++++..+.+.+..+..|+. +|+++++...+..  
T Consensus        61 ~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~  140 (237)
T KOG1663|consen   61 KGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE  140 (237)
T ss_pred             HHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence            4556666666678899999999999999888876  2238999999999999999999999987 4999999987752  


Q ss_pred             ----C-CCCccEEEEc
Q 025428          227 ----L-ERQFQLVMDK  237 (253)
Q Consensus       227 ----~-~~~fD~Vi~~  237 (253)
                          . .++||.+|..
T Consensus       141 l~~~~~~~tfDfaFvD  156 (237)
T KOG1663|consen  141 LLADGESGTFDFAFVD  156 (237)
T ss_pred             HHhcCCCCceeEEEEc
Confidence                1 2789988863

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.57  E-value=0.00039  Score=60.58  Aligned_cols=86  Identities=20%  Similarity=0.124  Sum_probs=64.0

Q ss_pred             HHHhccCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEE
Q 025428          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLV  234 (253)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~V  234 (253)
                      -..+.......+|+|||||.--++....... ...++|+||+..+++....-+...+. +.++...|+..-+.+...|+.
T Consensus        97 ~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~-~~~~~v~Dl~~~~~~~~~Dla  175 (251)
T PF07091_consen   97 DEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGV-PHDARVRDLLSDPPKEPADLA  175 (251)
T ss_dssp             HHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT--CEEEEEE-TTTSHTTSEESEE
T ss_pred             HHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCC-CcceeEeeeeccCCCCCcchh
Confidence            3444444567899999999999999888773 23899999999999999999888886 788888899888777889998


Q ss_pred             EEccccce
Q 025428          235 MDKGTLDA  242 (253)
Q Consensus       235 i~~~~l~~  242 (253)
                      +..=+++.
T Consensus       176 LllK~lp~  183 (251)
T PF07091_consen  176 LLLKTLPC  183 (251)
T ss_dssp             EEET-HHH
T ss_pred             hHHHHHHH
Confidence            87655553

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.56  E-value=3e-05  Score=66.76  Aligned_cols=74  Identities=20%  Similarity=0.281  Sum_probs=62.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc--CC-CCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK--LE-RQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~--~~-~~fD~Vi~  236 (253)
                      +++.+|||.++|-|..++..+++|+.+|+.++.+++.|++|.-|-=..++.  +|+++.||+.+.-  ++ .+||+|+-
T Consensus       133 ~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH  211 (287)
T COG2521         133 KRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH  211 (287)
T ss_pred             ccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence            568999999999999999999999989999999999999998764333332  5899999998864  44 78999884

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.56  E-value=0.00045  Score=52.16  Aligned_cols=74  Identities=36%  Similarity=0.548  Sum_probs=50.9

Q ss_pred             EEEEcCCCcHHHHHHHhcCC--CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC--CcCCC--CccEEEEccccc
Q 025428          168 VLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--TKLER--QFQLVMDKGTLD  241 (253)
Q Consensus       168 VLDiGcGtG~~~~~la~~g~--~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~--~~~~~--~fD~Vi~~~~l~  241 (253)
                      ++|+|||+|... .+.....  ..++|+|+++.++..++......+...+.+..+|...  .++..  .||++.....++
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~  130 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH  130 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence            999999999976 3333322  2799999999999996655433221116888888887  56654  799995444444


Q ss_pred             e
Q 025428          242 A  242 (253)
Q Consensus       242 ~  242 (253)
                      +
T Consensus       131 ~  131 (257)
T COG0500         131 L  131 (257)
T ss_pred             c
Confidence            3

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=97.50  E-value=0.001  Score=58.55  Aligned_cols=83  Identities=17%  Similarity=0.162  Sum_probs=69.5

Q ss_pred             HHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC---C
Q 025428          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE---R  229 (253)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~---~  229 (253)
                      +-.+....++.+||+-|+|+|.++.++++. + -.+++.+|+-+...+.|++-.+..|+. |+++.+-|+...-+.   .
T Consensus        97 I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~  176 (314)
T KOG2915|consen   97 ILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSL  176 (314)
T ss_pred             HHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCcccccc
Confidence            333344579999999999999999999988 2 249999999999999999999999886 799999999887653   6


Q ss_pred             CccEEEEcc
Q 025428          230 QFQLVMDKG  238 (253)
Q Consensus       230 ~fD~Vi~~~  238 (253)
                      .+|.|+...
T Consensus       177 ~aDaVFLDl  185 (314)
T KOG2915|consen  177 KADAVFLDL  185 (314)
T ss_pred             ccceEEEcC
Confidence            789998754

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=97.42  E-value=0.00088  Score=60.34  Aligned_cols=78  Identities=15%  Similarity=0.120  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C-CCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E-RQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~-~~fD~Vi  235 (253)
                      .++..++|.-+|.|..+..+++. +..+|+|+|.++.+++.++++++..+ .++.++++++.++..     . +++|.|+
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~~~~~vDgIl   97 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDELLVTKIDGIL   97 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhcCCCcccEEE
Confidence            46789999999999999999987 33699999999999999999886543 379999999987641     2 5689888


Q ss_pred             Eccccc
Q 025428          236 DKGTLD  241 (253)
Q Consensus       236 ~~~~l~  241 (253)
                      .+--+.
T Consensus        98 ~DLGvS  103 (305)
T TIGR00006        98 VDLGVS  103 (305)
T ss_pred             EeccCC
Confidence            755333

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.40  E-value=8.3e-05  Score=61.54  Aligned_cols=68  Identities=26%  Similarity=0.466  Sum_probs=46.3

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--------C-C--CC
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------L-E--RQ  230 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--------~-~--~~  230 (253)
                      .+.+|||+||++|.++..+.+++  ..+|+|+|+.+.           ..+.++.++++|+.+..        + .  ++
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~   91 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDIRKLLPESGEK   91 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCS
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhhhhhccccccC
Confidence            45799999999999999999997  459999999985           12235666677765431        1 1  58


Q ss_pred             ccEEEEccccce
Q 025428          231 FQLVMDKGTLDA  242 (253)
Q Consensus       231 fD~Vi~~~~l~~  242 (253)
                      ||+|++....+.
T Consensus        92 ~dlv~~D~~~~~  103 (181)
T PF01728_consen   92 FDLVLSDMAPNV  103 (181)
T ss_dssp             ESEEEE------
T ss_pred             cceeccccccCC
Confidence            999999885544

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=97.35  E-value=0.00047  Score=61.68  Aligned_cols=79  Identities=15%  Similarity=0.261  Sum_probs=58.1

Q ss_pred             CCEEEEEcCCCcH----HHHHHHhc-C----CCcEEEEeCCHHHHHHHHHHH------------------Hh-----cC-
Q 025428          165 SWSVLDIGTGNGL----LLQELSKQ-G----FSDLTGVDYSEDAINLAQSLA------------------NR-----DG-  211 (253)
Q Consensus       165 ~~~VLDiGcGtG~----~~~~la~~-g----~~~v~gvD~s~~~l~~ar~~~------------------~~-----~g-  211 (253)
                      .-+|+..||+||-    +++.+.+. +    .-+|+|+|+|+.+|+.|++-.                  ..     .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            3699999999996    34444442 1    127999999999999998742                  00     01 


Q ss_pred             ------C-CceEEEEeccCCCcC--CCCccEEEEcccccee
Q 025428          212 ------F-SCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       212 ------~-~~i~~~~~D~~~~~~--~~~fD~Vi~~~~l~~i  243 (253)
                            + ..|+|.+.|+.+.++  .+.||+|+|.++|.|+
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF  236 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF  236 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC
Confidence                  1 248999999988543  4889999999999876

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=97.29  E-value=0.00039  Score=64.78  Aligned_cols=61  Identities=30%  Similarity=0.459  Sum_probs=53.4

Q ss_pred             CEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc
Q 025428          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK  226 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~  226 (253)
                      ..|||||+|||.++...++.|+..|++++.-.-|.+.|++...++|.+ +|+++.---.+..
T Consensus        68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~  129 (636)
T KOG1501|consen   68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVK  129 (636)
T ss_pred             EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceee
Confidence            479999999999999999999889999999999999999999999986 5888765554443

>PHA01634 hypothetical protein

Probab=97.26  E-value=0.0017  Score=51.08  Aligned_cols=49  Identities=10%  Similarity=-0.012  Sum_probs=45.4

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF  212 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~  212 (253)
                      .+++|+|||.+.|..+++++-+|++.|++++.++...+..+++++.+.+
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI   76 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNI   76 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhee
Confidence            6789999999999999999999999999999999999999998877644

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.23  E-value=0.00041  Score=62.87  Aligned_cols=84  Identities=18%  Similarity=0.152  Sum_probs=65.3

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHH-------HHHHHHHhcCCC-c-eEEEEeccCC
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN-------LAQSLANRDGFS-C-IKFLVDDVLD  224 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~-------~ar~~~~~~g~~-~-i~~~~~D~~~  224 (253)
                      .+........+++.|+|--.|||.++...+..|+ .|+|.||+-.|+.       ..+.|++..|.. . +.++.+|..+
T Consensus       198 li~AN~Amv~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn  276 (421)
T KOG2671|consen  198 LIMANQAMVKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSN  276 (421)
T ss_pred             HHHhhhhccCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccC
Confidence            3334445557899999999999999999999987 9999999999987       345677777743 2 7888999988


Q ss_pred             CcCC--CCccEEEEcc
Q 025428          225 TKLE--RQFQLVMDKG  238 (253)
Q Consensus       225 ~~~~--~~fD~Vi~~~  238 (253)
                      .+.-  -.||.|+|..
T Consensus       277 ~~~rsn~~fDaIvcDP  292 (421)
T KOG2671|consen  277 PPLRSNLKFDAIVCDP  292 (421)
T ss_pred             cchhhcceeeEEEeCC
Confidence            7653  5677777643

>PRK00536 speE spermidine synthase; Provisional

Probab=97.19  E-value=0.0018  Score=57.23  Aligned_cols=73  Identities=15%  Similarity=0.023  Sum_probs=55.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc--CCC--ceEEEEeccCCCcCCCCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GFS--CIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~--g~~--~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      +..++||=||.|.|..++.++++. .+|+.|||++++++.+++-+...  +++  +++++. .+.+. ..++||+||...
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~-~~~~~-~~~~fDVIIvDs  147 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYD-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAK-QLLDL-DIKKYDLIICLQ  147 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcC-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEee-hhhhc-cCCcCCEEEEcC
Confidence            456899999999999999999995 49999999999999999954321  233  566665 22211 236899999874

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.17  E-value=0.00013  Score=64.52  Aligned_cols=81  Identities=17%  Similarity=0.164  Sum_probs=64.4

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCce-EEEEeccCCCcCC-CCc
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKLE-RQF  231 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i-~~~~~D~~~~~~~-~~f  231 (253)
                      ...+++.....+..+||+|||+|..+..-   ....++|+|++...+..+++.       +. ....+|+..+|+. .+|
T Consensus        35 ~v~qfl~~~~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~-------~~~~~~~ad~l~~p~~~~s~  104 (293)
T KOG1331|consen   35 MVRQFLDSQPTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRS-------GGDNVCRADALKLPFREESF  104 (293)
T ss_pred             HHHHHHhccCCcceeeecccCCcccCcCC---CcceeeecchhhhhccccccC-------CCceeehhhhhcCCCCCCcc
Confidence            34455555567889999999999875433   233799999999999888763       44 6888999999886 899


Q ss_pred             cEEEEccccceec
Q 025428          232 QLVMDKGTLDAIG  244 (253)
Q Consensus       232 D~Vi~~~~l~~i~  244 (253)
                      |.+++..++||+.
T Consensus       105 d~~lsiavihhls  117 (293)
T KOG1331|consen  105 DAALSIAVIHHLS  117 (293)
T ss_pred             ccchhhhhhhhhh
Confidence            9999999999983

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.16  E-value=0.0011  Score=57.40  Aligned_cols=73  Identities=18%  Similarity=0.171  Sum_probs=54.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcC---CCCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL---ERQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~---~~~fD~Vi~~~  238 (253)
                      .++..+||+|+.||.++..+..+|+++|+++|..-+.+..--++    . ++ +.+...|++.+..   .+..|++++.-
T Consensus        78 ~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~----d-~rV~~~E~tN~r~l~~~~~~~~~d~~v~Dv  152 (245)
T COG1189          78 VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN----D-PRVIVLERTNVRYLTPEDFTEKPDLIVIDV  152 (245)
T ss_pred             CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc----C-CcEEEEecCChhhCCHHHcccCCCeEEEEe
Confidence            57899999999999999999999999999999988766543332    1 23 4556667776643   25678888765


Q ss_pred             cc
Q 025428          239 TL  240 (253)
Q Consensus       239 ~l  240 (253)
                      .|
T Consensus       153 SF  154 (245)
T COG1189         153 SF  154 (245)
T ss_pred             eh
Confidence            44

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.08  E-value=0.0013  Score=55.96  Aligned_cols=71  Identities=17%  Similarity=0.179  Sum_probs=41.6

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCc
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQF  231 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~f  231 (253)
                      ..+++.+.+.++...|-|+|||.+.++..+. .+. .|..+|+-.               .|-.+..+|+...|++ ++.
T Consensus        61 d~iI~~l~~~~~~~viaD~GCGdA~la~~~~-~~~-~V~SfDLva---------------~n~~Vtacdia~vPL~~~sv  123 (219)
T PF05148_consen   61 DVIIEWLKKRPKSLVIADFGCGDAKLAKAVP-NKH-KVHSFDLVA---------------PNPRVTACDIANVPLEDESV  123 (219)
T ss_dssp             HHHHHHHCTS-TTS-EEEES-TT-HHHHH---S----EEEEESS----------------SSTTEEES-TTS-S--TT-E
T ss_pred             HHHHHHHHhcCCCEEEEECCCchHHHHHhcc-cCc-eEEEeeccC---------------CCCCEEEecCccCcCCCCce
Confidence            3445555555567899999999999997764 324 799999865               2335788999999987 899


Q ss_pred             cEEEEcccc
Q 025428          232 QLVMDKGTL  240 (253)
Q Consensus       232 D~Vi~~~~l  240 (253)
                      |++++.-.|
T Consensus       124 Dv~VfcLSL  132 (219)
T PF05148_consen  124 DVAVFCLSL  132 (219)
T ss_dssp             EEEEEES--
T ss_pred             eEEEEEhhh
Confidence            999985443

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.01  E-value=0.0013  Score=56.68  Aligned_cols=79  Identities=14%  Similarity=0.347  Sum_probs=59.9

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhc-CCCc-eEEEEeccCCCcC------CCCccE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-GFSC-IKFLVDDVLDTKL------ERQFQL  233 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~-g~~~-i~~~~~D~~~~~~------~~~fD~  233 (253)
                      ++.++||||.|.-++=-.+.-+  |+ +.+|.|+++..+..|+.++..+ ++.+ |+++..--....+      .+.||+
T Consensus        78 ~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~giig~nE~yd~  156 (292)
T COG3129          78 KNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGIIGKNERYDA  156 (292)
T ss_pred             CceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccccccceeee
Confidence            5669999999988775555544  66 8999999999999999999887 6653 7766543222222      368999


Q ss_pred             EEEcccccee
Q 025428          234 VMDKGTLDAI  243 (253)
Q Consensus       234 Vi~~~~l~~i  243 (253)
                      ++|+..||.-
T Consensus       157 tlCNPPFh~s  166 (292)
T COG3129         157 TLCNPPFHDS  166 (292)
T ss_pred             EecCCCcchh
Confidence            9999999863

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=97.00  E-value=0.0032  Score=53.84  Aligned_cols=76  Identities=17%  Similarity=0.164  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      ..+.++.||||=-|++..++.+.+ ...+++.|+++..++.|.++++++++. .++..++|....... ..+|+|+..|
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG   93 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG   93 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC
Confidence            355679999999999999999984 458999999999999999999999886 599999998654333 5799988754

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.99  E-value=0.0035  Score=53.25  Aligned_cols=67  Identities=19%  Similarity=0.203  Sum_probs=52.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCC--cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC--------C-CCc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------E-RQF  231 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~--~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~--------~-~~f  231 (253)
                      .++..|+|+|+-.|.++..++++...  .|+|+|+.|-           ..+.++.++++|+++...        . .++
T Consensus        44 ~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-----------~~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~  112 (205)
T COG0293          44 KPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-----------KPIPGVIFLQGDITDEDTLEKLLEALGGAPV  112 (205)
T ss_pred             cCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-----------ccCCCceEEeeeccCccHHHHHHHHcCCCCc
Confidence            56789999999999999999998322  5999999883           223579999999988642        2 457


Q ss_pred             cEEEEcccc
Q 025428          232 QLVMDKGTL  240 (253)
Q Consensus       232 D~Vi~~~~l  240 (253)
                      |+|++...=
T Consensus       113 DvV~sD~ap  121 (205)
T COG0293         113 DVVLSDMAP  121 (205)
T ss_pred             ceEEecCCC
Confidence            999986643

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=96.97  E-value=0.0032  Score=57.17  Aligned_cols=81  Identities=17%  Similarity=0.176  Sum_probs=56.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc----C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEE--EEeccCCC----cC---C
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKF--LVDDVLDT----KL---E  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~----g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~--~~~D~~~~----~~---~  228 (253)
                      .++..|+|+|||+|.-+..|.+.    + ....+++|+|.++|+.+.+++....++++++  +++|+.+.    +.   .
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~  154 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENR  154 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhccccccc
Confidence            45668999999999987665543    1 2379999999999999999988445555544  88988653    11   2


Q ss_pred             CCccEEEEcc-cccee
Q 025428          229 RQFQLVMDKG-TLDAI  243 (253)
Q Consensus       229 ~~fD~Vi~~~-~l~~i  243 (253)
                      ....+++.-| ++..+
T Consensus       155 ~~~r~~~flGSsiGNf  170 (319)
T TIGR03439       155 SRPTTILWLGSSIGNF  170 (319)
T ss_pred             CCccEEEEeCccccCC
Confidence            3456776655 55443

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=96.96  E-value=0.0034  Score=55.58  Aligned_cols=79  Identities=19%  Similarity=0.280  Sum_probs=59.0

Q ss_pred             CCEEEEEcCCCcH----HHHHHHhcC-----C-CcEEEEeCCHHHHHHHHHHH-----H-h---------------cC--
Q 025428          165 SWSVLDIGTGNGL----LLQELSKQG-----F-SDLTGVDYSEDAINLAQSLA-----N-R---------------DG--  211 (253)
Q Consensus       165 ~~~VLDiGcGtG~----~~~~la~~g-----~-~~v~gvD~s~~~l~~ar~~~-----~-~---------------~g--  211 (253)
                      .-+|+-+||+||-    +++.+.+.+     . -+|+|+|||..+|+.|+.-.     . +               .|  
T Consensus        97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y  176 (268)
T COG1352          97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY  176 (268)
T ss_pred             ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence            5699999999996    444444442     1 28999999999999998621     1 0               01  


Q ss_pred             -----C-CceEEEEeccCCCc-CCCCccEEEEcccccee
Q 025428          212 -----F-SCIKFLVDDVLDTK-LERQFQLVMDKGTLDAI  243 (253)
Q Consensus       212 -----~-~~i~~~~~D~~~~~-~~~~fD~Vi~~~~l~~i  243 (253)
                           + ..|.|...|+.... +.+.||+|+|..||-++
T Consensus       177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYF  215 (268)
T COG1352         177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYF  215 (268)
T ss_pred             EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEee
Confidence                 1 24788888988877 66889999999999876

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=96.88  E-value=0.0014  Score=60.61  Aligned_cols=84  Identities=21%  Similarity=0.186  Sum_probs=71.9

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCC-CCccEEEEcc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      ...++..++|+|||.|.....++..+...++|+|+++.-+.++.......++.+ ..++.+|+.+.+++ +.||.+-+..
T Consensus       107 ~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld  186 (364)
T KOG1269|consen  107 SCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLE  186 (364)
T ss_pred             cCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEe
Confidence            445666899999999999999999976799999999999999988887777764 66789999999886 8999999988


Q ss_pred             ccceec
Q 025428          239 TLDAIG  244 (253)
Q Consensus       239 ~l~~i~  244 (253)
                      +.+|+.
T Consensus       187 ~~~~~~  192 (364)
T KOG1269|consen  187 VVCHAP  192 (364)
T ss_pred             ecccCC
Confidence            888763

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.73  E-value=0.0033  Score=57.62  Aligned_cols=74  Identities=30%  Similarity=0.387  Sum_probs=59.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHH--h-c--CC--CceEEEEeccCCCcC--CCCcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLAN--R-D--GF--SCIKFLVDDVLDTKL--ERQFQ  232 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~--~-~--g~--~~i~~~~~D~~~~~~--~~~fD  232 (253)
                      +.-.+||-+|.|.|.-+..+.+.+ ..+++-+|.+|.||+.++++..  . |  .+  ++++++..|+.++.-  .+.||
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD  367 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD  367 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence            445699999999999999999994 7899999999999999995432  1 1  12  258999999988743  27899


Q ss_pred             EEEE
Q 025428          233 LVMD  236 (253)
Q Consensus       233 ~Vi~  236 (253)
                      +||.
T Consensus       368 ~vIV  371 (508)
T COG4262         368 VVIV  371 (508)
T ss_pred             EEEE
Confidence            9985

>KOG4058 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.0036  Score=50.48  Aligned_cols=66  Identities=20%  Similarity=0.358  Sum_probs=56.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~  228 (253)
                      .+..+.+|+|+|.|++-...++.|....+|+++++-.+..+|-.+-+.|.. ...|+.-|+....+.
T Consensus        71 n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~  137 (199)
T KOG4058|consen   71 NPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR  137 (199)
T ss_pred             CCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence            455789999999999999999998669999999999999999988888776 477888888776543

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.69  E-value=0.0047  Score=59.32  Aligned_cols=91  Identities=19%  Similarity=0.189  Sum_probs=68.5

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C----CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccC
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVL  223 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g----~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~  223 (253)
                      ++...+++++.. .+..+|+|..||+|.++....+. +    ...++|.|+++.....|+.++-..|+. ++...++|-.
T Consensus       173 ~v~~liv~~l~~-~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dtl  251 (489)
T COG0286         173 EVSELIVELLDP-EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDTL  251 (489)
T ss_pred             HHHHHHHHHcCC-CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccccccccc
Confidence            445555555554 45569999999999998877765 2    136899999999999999999888886 4677777765


Q ss_pred             CCcC-----C-CCccEEEEccccc
Q 025428          224 DTKL-----E-RQFQLVMDKGTLD  241 (253)
Q Consensus       224 ~~~~-----~-~~fD~Vi~~~~l~  241 (253)
                      .-+.     . ++||.|+++..+.
T Consensus       252 ~~~~~~~~~~~~~~D~viaNPPf~  275 (489)
T COG0286         252 SNPKHDDKDDKGKFDFVIANPPFS  275 (489)
T ss_pred             cCCcccccCCccceeEEEeCCCCC
Confidence            5542     2 6799999988765

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.68  E-value=0.012  Score=51.16  Aligned_cols=76  Identities=25%  Similarity=0.271  Sum_probs=46.9

Q ss_pred             CEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHH---HHHhcC-C-----CceEEEEeccCCCcC--CCCccEE
Q 025428          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS---LANRDG-F-----SCIKFLVDDVLDTKL--ERQFQLV  234 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~---~~~~~g-~-----~~i~~~~~D~~~~~~--~~~fD~V  234 (253)
                      .+|||.-+|-|.-++.++..|+ +|++++.|+-+....+.   ++.... .     .+|+++++|..++..  .++||+|
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV  155 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV  155 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred             CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence            4999999999999999998887 89999999976544443   333221 1     269999999988632  4899999


Q ss_pred             EEccccce
Q 025428          235 MDKGTLDA  242 (253)
Q Consensus       235 i~~~~l~~  242 (253)
                      .....|.+
T Consensus       156 Y~DPMFp~  163 (234)
T PF04445_consen  156 YFDPMFPE  163 (234)
T ss_dssp             EE--S---
T ss_pred             EECCCCCC
Confidence            98776654

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=96.57  E-value=0.008  Score=55.93  Aligned_cols=90  Identities=12%  Similarity=0.006  Sum_probs=73.5

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---C
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---L  227 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---~  227 (253)
                      +.+.-+...+.++.+|||+++-.|.-+.++|..  +-..|++.|.+.+-+...+.++.+.|+.|..+.+.|..+++   +
T Consensus       230 S~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~  309 (460)
T KOG1122|consen  230 SFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF  309 (460)
T ss_pred             ccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc
Confidence            334444556678999999999999988888876  33379999999999999999999999999889999998775   3


Q ss_pred             CCCccEEEEccccce
Q 025428          228 ERQFQLVMDKGTLDA  242 (253)
Q Consensus       228 ~~~fD~Vi~~~~l~~  242 (253)
                      +++||-|+......-
T Consensus       310 ~~~fDRVLLDAPCSG  324 (460)
T KOG1122|consen  310 PGSFDRVLLDAPCSG  324 (460)
T ss_pred             CcccceeeecCCCCC
Confidence            468999998766555

>PRK11524 putative methyltransferase; Provisional

Probab=96.54  E-value=0.0073  Score=53.82  Aligned_cols=46  Identities=15%  Similarity=0.070  Sum_probs=42.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR  209 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~  209 (253)
                      .++..|||..||+|..+....+.|- +.+|+|++++.++.|++|+..
T Consensus       207 ~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence            5789999999999999999999865 999999999999999999753

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.51  E-value=0.0074  Score=53.60  Aligned_cols=71  Identities=17%  Similarity=0.188  Sum_probs=56.1

Q ss_pred             EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---CCCccEEEEcccccee
Q 025428          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---~~~fD~Vi~~~~l~~i  243 (253)
                      +++|+.||.|.+..-+...|+..+.++|+++.+++..+.|...      .++++|+.++..   ...+|+++.......+
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~------~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f   75 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN------KLIEGDITKIDEKDFIPDIDLLTGGFPCQPF   75 (275)
T ss_pred             cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC------CCccCccccCchhhcCCCCCEEEeCCCChhh
Confidence            6999999999999999988988899999999999988887531      156677777653   3568999886655433

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=96.50  E-value=0.0016  Score=58.05  Aligned_cols=73  Identities=12%  Similarity=0.088  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCCcHHHH-HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEE
Q 025428          164 SSWSVLDIGTGNGLLLQ-ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMD  236 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~-~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~  236 (253)
                      .+..|+|+-+|-|++++ ++...|++.|+++|.+|..++-.|++++.+++. .+..+.+|.+...+....|-|..
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnL  268 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNL  268 (351)
T ss_pred             ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheee
Confidence            45789999999999999 788889999999999999999999999998875 47788888888766666776654

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=96.41  E-value=0.0088  Score=53.19  Aligned_cols=74  Identities=30%  Similarity=0.417  Sum_probs=46.0

Q ss_pred             CCEEEEEcCCCc-HHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHH-hcCCC-ceEEEEeccCCCcCC-CCccEEEEcc
Q 025428          165 SWSVLDIGTGNG-LLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLAN-RDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       165 ~~~VLDiGcGtG-~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~-~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      ..+|+=||||.= ..++.++++ +. ..|+++|+++++++.+++..+ ..|+. +++|+.+|..+...+ ..||+|+...
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            359999999954 445556554 32 379999999999999999877 44554 599999999887655 7899998744

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.40  E-value=0.025  Score=49.21  Aligned_cols=75  Identities=20%  Similarity=0.227  Sum_probs=45.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC---CCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---RQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~---~~fD~Vi~~~  238 (253)
                      ..+++||=+|=.--.-.........++|+.+|+++.+|+..++.+++.|++ |+.++.|+++..++   ++||+++...
T Consensus        43 L~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~~~~fD~f~TDP  120 (243)
T PF01861_consen   43 LEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEELRGKFDVFFTDP  120 (243)
T ss_dssp             STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTTSS-BSEEEE--
T ss_pred             ccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHHhcCCCEEEeCC
Confidence            578899999954433222222234569999999999999999999999985 99999999986433   8999999864

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=96.34  E-value=0.0081  Score=50.54  Aligned_cols=42  Identities=21%  Similarity=0.228  Sum_probs=35.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~  205 (253)
                      .++..|||..||+|..+......|. +.+|+|++++.++.|++
T Consensus       190 ~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  190 NPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             -TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred             ccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence            4789999999999999999999965 89999999999999874

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=96.26  E-value=0.032  Score=50.05  Aligned_cols=75  Identities=12%  Similarity=0.088  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C-CCccEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E-RQFQLV  234 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~-~~fD~V  234 (253)
                      .+++..||.--|.|..+..+.++.  ..+++|+|.++.+|+.|++++...+ .++.++++++.++..     . +++|-|
T Consensus        22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~~~i~~vDGi  100 (314)
T COG0275          22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKELGIGKVDGI  100 (314)
T ss_pred             CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHhcCCCceeEE
Confidence            567899999999999999999983  2479999999999999999988765 489999999877642     1 477777


Q ss_pred             EEcc
Q 025428          235 MDKG  238 (253)
Q Consensus       235 i~~~  238 (253)
                      +..-
T Consensus       101 L~DL  104 (314)
T COG0275         101 LLDL  104 (314)
T ss_pred             EEec
Confidence            7644

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=96.25  E-value=0.0089  Score=51.07  Aligned_cols=45  Identities=27%  Similarity=0.388  Sum_probs=34.9

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHH
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLAN  208 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~---g~~~v~gvD~s~~~l~~ar~~~~  208 (253)
                      ...++.|.+||.|.++..+.-.   .-..|+|.|+++++|+.|++|+.
T Consensus        51 ~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   51 GPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             CCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            3459999999999998877654   23389999999999999999874

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>PRK13699 putative methylase; Provisional

Probab=96.23  E-value=0.018  Score=49.76  Aligned_cols=47  Identities=19%  Similarity=0.096  Sum_probs=42.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~  210 (253)
                      .++..|||..||+|..+....+.|. +.+|+|++++..+.+.++++..
T Consensus       162 ~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~~  208 (227)
T PRK13699        162 HPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAAV  208 (227)
T ss_pred             CCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHHH
Confidence            4788999999999999999998866 9999999999999999988653

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.21  E-value=0.0085  Score=55.67  Aligned_cols=73  Identities=21%  Similarity=0.215  Sum_probs=57.4

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCc--eEEEEeccCCCc--CCCCccEEEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTK--LERQFQLVMD  236 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~--i~~~~~D~~~~~--~~~~fD~Vi~  236 (253)
                      ...+|||.=+|+|.=+++.+..  +..+|+.-|+|+++++..++|++.+++..  +++.+.|+..+-  ....||+|=.
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDl  127 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDL  127 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEe
Confidence            3458999999999999999987  55699999999999999999999999975  889999987764  3578888754

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=96.19  E-value=0.014  Score=53.19  Aligned_cols=72  Identities=15%  Similarity=0.265  Sum_probs=59.6

Q ss_pred             CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccccee
Q 025428          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  243 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~i  243 (253)
                      -...+|+|.|.|+++..+..+ +.++-+++....-+-.++..+. .   .|+.+-+|..+- .| +-|+|++..+|||.
T Consensus       178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~-~---gV~~v~gdmfq~-~P-~~daI~mkWiLhdw  249 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA-P---GVEHVAGDMFQD-TP-KGDAIWMKWILHDW  249 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc-C---Ccceeccccccc-CC-CcCeEEEEeecccC
Confidence            478999999999999999996 7789999999988877777654 3   378888888876 33 34699999999997

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.17  E-value=0.00046  Score=58.54  Aligned_cols=42  Identities=17%  Similarity=0.337  Sum_probs=37.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      ...++||+|+|.|.++..++.. +.+|++.+.|..|..+.+++
T Consensus       112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen  112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKK  153 (288)
T ss_pred             CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhc
Confidence            4479999999999999999998 88999999999999877664

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=96.15  E-value=0.0058  Score=46.57  Aligned_cols=33  Identities=33%  Similarity=0.557  Sum_probs=28.8

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCH
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE  197 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~  197 (253)
                      +....+|||||+|.+.-.|...|+ ...|+|.-.
T Consensus        58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~R~   90 (112)
T PF07757_consen   58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDARR   90 (112)
T ss_pred             CCCceEEccCCchHHHHHHHhCCC-Ccccccccc
Confidence            456899999999999999999998 899999743

; GO: 0008168 methyltransferase activity

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=96.12  E-value=0.011  Score=52.05  Aligned_cols=68  Identities=10%  Similarity=0.132  Sum_probs=51.2

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCc
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQF  231 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~f  231 (253)
                      ..+++.+..-.....|-|+|||-+.++.   .. ...|.++|+-.               .|-.++.+|+.+.|++ ++.
T Consensus       169 d~ii~~ik~r~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~d~sv  229 (325)
T KOG3045|consen  169 DVIIRKIKRRPKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA---------------VNERVIACDMRNVPLEDESV  229 (325)
T ss_pred             HHHHHHHHhCcCceEEEecccchhhhhh---cc-ccceeeeeeec---------------CCCceeeccccCCcCccCcc
Confidence            3445555554567799999999999887   22 33899999854               3567899999999986 899


Q ss_pred             cEEEEccc
Q 025428          232 QLVMDKGT  239 (253)
Q Consensus       232 D~Vi~~~~  239 (253)
                      |++++...
T Consensus       230 DvaV~CLS  237 (325)
T KOG3045|consen  230 DVAVFCLS  237 (325)
T ss_pred             cEEEeeHh
Confidence            99997443

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=96.04  E-value=0.015  Score=52.58  Aligned_cols=82  Identities=13%  Similarity=0.123  Sum_probs=58.3

Q ss_pred             HHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C-
Q 025428          155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L-  227 (253)
Q Consensus       155 l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~-  227 (253)
                      +++.+.. .++...||.--|.|.++..+++. +..+++|+|.++.+++.|++++...+ .++.++++++.++.     . 
T Consensus        12 vl~~L~~-~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~-~r~~~~~~~F~~l~~~l~~~~   89 (310)
T PF01795_consen   12 VLEALNP-KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFD-DRFIFIHGNFSNLDEYLKELN   89 (310)
T ss_dssp             HHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCC-TTEEEEES-GGGHHHHHHHTT
T ss_pred             HHHhhCc-CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhcc-ceEEEEeccHHHHHHHHHHcc
Confidence            3444442 57789999999999999999987 44699999999999999999876542 47999999998864     1 


Q ss_pred             C-CCccEEEEcc
Q 025428          228 E-RQFQLVMDKG  238 (253)
Q Consensus       228 ~-~~fD~Vi~~~  238 (253)
                      . .++|.|+..-
T Consensus        90 ~~~~~dgiL~DL  101 (310)
T PF01795_consen   90 GINKVDGILFDL  101 (310)
T ss_dssp             TTS-EEEEEEE-
T ss_pred             CCCccCEEEEcc
Confidence            2 5788887643

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=95.96  E-value=0.038  Score=49.05  Aligned_cols=41  Identities=29%  Similarity=0.366  Sum_probs=36.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHH
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~  205 (253)
                      ...+||-.|||.|+++..+|.+|+ .+.|.|.|--|+=..+-
T Consensus        56 ~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~f   96 (270)
T PF07942_consen   56 SKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNF   96 (270)
T ss_pred             CccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHH
Confidence            457999999999999999999999 99999999999754443

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=95.93  E-value=0.019  Score=50.18  Aligned_cols=78  Identities=17%  Similarity=0.276  Sum_probs=52.9

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc-C--------CCcEEEEeCCHHHHHHHHHHHHhc-----CC-CceEEEEeccCCCcCCC
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ-G--------FSDLTGVDYSEDAINLAQSLANRD-----GF-SCIKFLVDDVLDTKLER  229 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~-g--------~~~v~gvD~s~~~l~~ar~~~~~~-----g~-~~i~~~~~D~~~~~~~~  229 (253)
                      .-+|+++|.|+|.++.-+++. .        ..+++-||+|+.+.+.-++++...     .. .+|.+ ..++.+.+   
T Consensus        19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~~~~~~~~~~~~i~w-~~~l~~~p---   94 (252)
T PF02636_consen   19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSEHAPKDTEFGDPIRW-LDDLEEVP---   94 (252)
T ss_dssp             -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCCH---STTTCGCEEE-ESSGGCS----
T ss_pred             CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhhhcccccccCCccch-hhhhhccc---
Confidence            369999999999999888764 1        137999999999988888887652     12 24666 34554443   


Q ss_pred             CccEEEEccccceeccC
Q 025428          230 QFQLVMDKGTLDAIGLH  246 (253)
Q Consensus       230 ~fD~Vi~~~~l~~i~~~  246 (253)
                      ..-+|++|.+|+.+.++
T Consensus        95 ~~~~iiaNE~~DAlP~~  111 (252)
T PF02636_consen   95 FPGFIIANELFDALPVD  111 (252)
T ss_dssp             CCEEEEEESSGGGS--E
T ss_pred             CCEEEEEeeehhcCcee
Confidence            45578889999887653

; PDB: 4F3N_A 1ZKD_B.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=95.93  E-value=0.0053  Score=58.32  Aligned_cols=71  Identities=17%  Similarity=0.165  Sum_probs=47.0

Q ss_pred             CEEEEEcCCCcHHHHHHHhcCCCcEEEE---eCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          166 WSVLDIGTGNGLLLQELSKQGFSDLTGV---DYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g~~~v~gv---D~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      ..+||+|||+|.++.+|.+++. .++.+   |..+..++.|.++    |+.-+--+ .--..+|++ +.||+|-|..++.
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V-~t~s~a~~d~~~~qvqfaleR----Gvpa~~~~-~~s~rLPfp~~~fDmvHcsrc~i  192 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNV-TTMSFAPNDEHEAQVQFALER----GVPAMIGV-LGSQRLPFPSNAFDMVHCSRCLI  192 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCc-eEEEcccccCCchhhhhhhhc----Ccchhhhh-hccccccCCccchhhhhcccccc
Confidence            4899999999999999999965 23222   4445566666654    54321111 112456766 8999999887765


Q ss_pred             e
Q 025428          242 A  242 (253)
Q Consensus       242 ~  242 (253)
                      .
T Consensus       193 ~  193 (506)
T PF03141_consen  193 P  193 (506)
T ss_pred             c
Confidence            3

; GO: 0008168 methyltransferase activity

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=95.83  E-value=0.013  Score=49.70  Aligned_cols=62  Identities=18%  Similarity=0.254  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcC-------CCceEEEEeccCCC
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-------FSCIKFLVDDVLDT  225 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g-------~~~i~~~~~D~~~~  225 (253)
                      +.-.+.|||||-|.++..|+.. +-.-+.|++|--..-+..+++++..+       +.|+.++..+....
T Consensus        60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~  129 (249)
T KOG3115|consen   60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKF  129 (249)
T ss_pred             ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhh
Confidence            4457999999999999999998 33478899998888888888876554       55788887777654

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.80  E-value=0.022  Score=52.27  Aligned_cols=70  Identities=19%  Similarity=0.172  Sum_probs=57.0

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEE
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLV  234 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~V  234 (253)
                      ..+|||.-+|||.=+++++.. +..+|+.-|+||++++.+++|++.|...+...++.|+..+-..  ..||+|
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~I  125 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVI  125 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEE
Confidence            679999999999999999987 4448999999999999999999998555677777777665332  556655

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=95.43  E-value=0.028  Score=48.10  Aligned_cols=62  Identities=19%  Similarity=0.254  Sum_probs=46.8

Q ss_pred             CEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC----CCccEEEEccccc
Q 025428          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE----RQFQLVMDKGTLD  241 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~----~~fD~Vi~~~~l~  241 (253)
                      -++|||||=+......-... + .|+.||+++               .+-.+.+.|+.+.|.+    ++||+|.+.-||.
T Consensus        53 lrlLEVGals~~N~~s~~~~-f-dvt~IDLns---------------~~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLN  115 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTSGW-F-DVTRIDLNS---------------QHPGILQQDFMERPLPKNESEKFDVISLSLVLN  115 (219)
T ss_pred             ceEEeecccCCCCcccccCc-e-eeEEeecCC---------------CCCCceeeccccCCCCCCcccceeEEEEEEEEe
Confidence            69999999755544333222 4 799999987               2446788899888753    7899999999999


Q ss_pred             eec
Q 025428          242 AIG  244 (253)
Q Consensus       242 ~i~  244 (253)
                      ++.
T Consensus       116 fVP  118 (219)
T PF11968_consen  116 FVP  118 (219)
T ss_pred             eCC
Confidence            984

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=95.08  E-value=0.0071  Score=45.31  Aligned_cols=69  Identities=29%  Similarity=0.354  Sum_probs=24.3

Q ss_pred             EEEcCCCcHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc--CC-CCccEEEEcc
Q 025428          169 LDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LE-RQFQLVMDKG  238 (253)
Q Consensus       169 LDiGcGtG~~~~~la~~----g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~--~~-~~fD~Vi~~~  238 (253)
                      |+|||..|..+..+++.    +..+++++|..+. .+..++.+++.++. ++++++++..+..  +. +++|+++..+
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg   77 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDG   77 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECC
Confidence            68999999998888764    2137999999995 44444444444444 6999999997652  23 7899999765

>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins

Probab=94.91  E-value=0.11  Score=46.04  Aligned_cols=80  Identities=18%  Similarity=0.200  Sum_probs=47.7

Q ss_pred             CCCEEEEEcCCCc--HHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC-----CCcc
Q 025428          164 SSWSVLDIGTGNG--LLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE-----RQFQ  232 (253)
Q Consensus       164 ~~~~VLDiGcGtG--~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~-----~~fD  232 (253)
                      .-...||||||--  ...-.+++.  ...+|+-+|+++-.+..++..+..+.-....++++|+.+..  +.     +-+|
T Consensus        68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD  147 (267)
T PF04672_consen   68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLD  147 (267)
T ss_dssp             ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--
T ss_pred             CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCC
Confidence            3468999999932  233444443  34499999999999999999887653223889999998853  11     3334


Q ss_pred             -----EEEEcccccee
Q 025428          233 -----LVMDKGTLDAI  243 (253)
Q Consensus       233 -----~Vi~~~~l~~i  243 (253)
                           .|++.++||++
T Consensus       148 ~~rPVavll~~vLh~v  163 (267)
T PF04672_consen  148 FDRPVAVLLVAVLHFV  163 (267)
T ss_dssp             TTS--EEEECT-GGGS
T ss_pred             CCCCeeeeeeeeeccC
Confidence                 58889999998

; PDB: 3GIW_A 3GO4_A 2QE6_A.

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=94.86  E-value=0.052  Score=48.34  Aligned_cols=69  Identities=17%  Similarity=0.266  Sum_probs=53.8

Q ss_pred             EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---CCCccEEEEccccce
Q 025428          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---ERQFQLVMDKGTLDA  242 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---~~~fD~Vi~~~~l~~  242 (253)
                      +++|+.||.|.+..-|...|+..+.++|+++.+++.-+.|..       ....+|+.++..   ++.+|+++......-
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l~~~~D~l~ggpPCQ~   73 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDLPKDVDLLIGGPPCQG   73 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHHHHT-SEEEEE---TT
T ss_pred             cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccccccceEEEeccCCce
Confidence            699999999999999999998889999999999988888753       788899988863   225898887554443

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=94.61  E-value=0.35  Score=41.67  Aligned_cols=73  Identities=16%  Similarity=0.245  Sum_probs=52.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----CCCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~~~fD~Vi~  236 (253)
                      .++.+||-+|..+|.....++.- | -..|++++.|+...+..-..+++.  +||--+..|+.....    -+.+|+|++
T Consensus        72 k~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~Y~~lv~~VDvI~~  149 (229)
T PF01269_consen   72 KPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEKYRMLVEMVDVIFQ  149 (229)
T ss_dssp             -TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred             CCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHHhhcccccccEEEe
Confidence            57889999999999999999987 4 338999999996655444444333  589899999987541    268899987


Q ss_pred             c
Q 025428          237 K  237 (253)
Q Consensus       237 ~  237 (253)
                      .
T Consensus       150 D  150 (229)
T PF01269_consen  150 D  150 (229)
T ss_dssp             E
T ss_pred             c
Confidence            4

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=94.40  E-value=0.032  Score=52.16  Aligned_cols=62  Identities=18%  Similarity=0.184  Sum_probs=55.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCC
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDT  225 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~  225 (253)
                      .++..|.|+.||.|-+...++.+++ .|++-|.++++++..+.+++.+.+.  +|+.+..|+..+
T Consensus       248 k~gevv~D~FaGvGPfa~Pa~kK~c-rV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F  311 (495)
T KOG2078|consen  248 KPGEVVCDVFAGVGPFALPAAKKGC-RVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF  311 (495)
T ss_pred             CCcchhhhhhcCcCccccchhhcCc-EEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence            5778999999999999999999975 9999999999999999999988775  488888887665

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=93.92  E-value=0.15  Score=46.80  Aligned_cols=79  Identities=13%  Similarity=0.184  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC---------CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCC-ccE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG---------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ-FQL  233 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g---------~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~-fD~  233 (253)
                      ..-.++++|.|+|.++.-+++..         ..++.-|++|++..+.-+++++... .  .+......+. +++. .=+
T Consensus        77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~-~--~~~~~~~~e~-~p~~~~~i  152 (370)
T COG1565          77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE-D--LIRWVEWVED-LPKKFPGI  152 (370)
T ss_pred             CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc-c--chhHHHHHHh-ccccCceE
Confidence            44589999999999987776541         3489999999998888887775432 1  1111122222 2344 456


Q ss_pred             EEEccccceeccC
Q 025428          234 VMDKGTLDAIGLH  246 (253)
Q Consensus       234 Vi~~~~l~~i~~~  246 (253)
                      |++|..|+.+.++
T Consensus       153 ~~~NElfDAlPv~  165 (370)
T COG1565         153 VVSNELFDALPVE  165 (370)
T ss_pred             EEechhhccccce
Confidence            7788888888664

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=93.74  E-value=0.12  Score=46.71  Aligned_cols=70  Identities=13%  Similarity=0.161  Sum_probs=53.4

Q ss_pred             EEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEEcccccee
Q 025428          168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTLDAI  243 (253)
Q Consensus       168 VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~~~~l~~i  243 (253)
                      |+|+.||.|.+..-|...|+.-+.++|+++.+++.-+.|..     + .++++|+.++...  ..+|+++.......+
T Consensus         1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f   72 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSDIPDFDILLGGFPCQPF   72 (315)
T ss_pred             CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence            68999999999999988898677789999999998887752     2 3456788776532  457888876554443

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=93.57  E-value=0.18  Score=46.71  Aligned_cols=53  Identities=26%  Similarity=0.266  Sum_probs=40.9

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      +++..+.....-..|+|+|.|.|.++.+++-+-.-.|.+||-|+...+.|++.
T Consensus       143 elvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL  195 (476)
T KOG2651|consen  143 ELVSSISDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL  195 (476)
T ss_pred             HHHHHHHhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence            44444555556679999999999999999877223999999998877777653

>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases

Probab=93.32  E-value=0.21  Score=39.96  Aligned_cols=49  Identities=12%  Similarity=0.193  Sum_probs=37.2

Q ss_pred             cEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC--C-CCccEEEEc
Q 025428          189 DLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL--E-RQFQLVMDK  237 (253)
Q Consensus       189 ~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~--~-~~fD~Vi~~  237 (253)
                      +|+|+||.+++|+.++++++..++. ++++++..-.++..  + +++|+++.|
T Consensus         1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN   53 (140)
T PF06962_consen    1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN   53 (140)
T ss_dssp             EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE
T ss_pred             CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE
Confidence            5899999999999999999999886 59999988877653  3 379998873

; PDB: 3EEY_H 3LBY_A 3MTI_A.

>COG1255 Uncharacterized protein conserved in archaea [Function unknown]

Probab=92.87  E-value=0.38  Score=37.16  Aligned_cols=61  Identities=25%  Similarity=0.465  Sum_probs=46.0

Q ss_pred             CCCEEEEEcCCCc-HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEE
Q 025428          164 SSWSVLDIGTGNG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMD  236 (253)
Q Consensus       164 ~~~~VLDiGcGtG-~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~  236 (253)
                      ..++|+++|.|-= ..+..|+++|+ .++++|+++.       ++   + ..++++..|+.+....  ...|+|.+
T Consensus        13 ~~gkVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~-------~a---~-~g~~~v~DDitnP~~~iY~~A~lIYS   76 (129)
T COG1255          13 ARGKVVEVGIGFFLDVAKRLAERGF-DVLATDINEK-------TA---P-EGLRFVVDDITNPNISIYEGADLIYS   76 (129)
T ss_pred             cCCcEEEEccchHHHHHHHHHHcCC-cEEEEecccc-------cC---c-ccceEEEccCCCccHHHhhCccceee
Confidence            4459999998854 35778888888 9999999986       11   1 3578999999987654  56777776

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=92.85  E-value=0.27  Score=44.74  Aligned_cols=74  Identities=14%  Similarity=0.190  Sum_probs=58.6

Q ss_pred             CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC---C-CccEEEEcccc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---R-QFQLVMDKGTL  240 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~---~-~fD~Vi~~~~l  240 (253)
                      ..+++|+.||.|.+..-+...|+.-+.++|+++.+++.-+.|...     -.++..|+.+....   . .+|+++.....
T Consensus         3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~~~~~~DvligGpPC   77 (328)
T COG0270           3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEALRKSDVDVLIGGPPC   77 (328)
T ss_pred             CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhccccCCCEEEeCCCC
Confidence            358999999999999999999998889999999999888877532     46777787766532   2 78999886655


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      ..+
T Consensus        78 Q~F   80 (328)
T COG0270          78 QDF   80 (328)
T ss_pred             cch
Confidence            554

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=92.81  E-value=0.51  Score=40.67  Aligned_cols=74  Identities=14%  Similarity=0.153  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---CCCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---LERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---~~~~fD~Vi~~  237 (253)
                      .++.+||.||-|-|.+...+.+.....-+-|+..++.++..|...-... .|+..+.+-+.+..   .++.||-|+-.
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek-~nViil~g~WeDvl~~L~d~~FDGI~yD  176 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK-ENVIILEGRWEDVLNTLPDKHFDGIYYD  176 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc-cceEEEecchHhhhccccccCcceeEee
Confidence            4789999999999999999998866677889999999998888653332 37888888776653   34779988753

>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown

Probab=92.69  E-value=0.19  Score=39.46  Aligned_cols=61  Identities=25%  Similarity=0.500  Sum_probs=36.8

Q ss_pred             CCCEEEEEcCCCc-HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEE
Q 025428          164 SSWSVLDIGTGNG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMD  236 (253)
Q Consensus       164 ~~~~VLDiGcGtG-~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~  236 (253)
                      ...+|+++|-|.= ..+..|.++|+ .|+++|+++.       ++.    ..+.++..|+.+..+.  ...|+|.+
T Consensus        13 ~~~kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~-------~a~----~g~~~v~DDif~P~l~iY~~a~lIYS   76 (127)
T PF03686_consen   13 NYGKIVEVGIGFNPEVAKKLKERGF-DVIATDINPR-------KAP----EGVNFVVDDIFNPNLEIYEGADLIYS   76 (127)
T ss_dssp             -SSEEEEET-TT--HHHHHHHHHS--EEEEE-SS-S---------------STTEE---SSS--HHHHTTEEEEEE
T ss_pred             CCCcEEEECcCCCHHHHHHHHHcCC-cEEEEECccc-------ccc----cCcceeeecccCCCHHHhcCCcEEEE
Confidence            4459999999964 45777777787 9999999996       111    2568999999987654  66788876

; PDB: 2K4M_A.

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.59  E-value=0.036  Score=45.47  Aligned_cols=78  Identities=15%  Similarity=0.213  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc---CCCceEEEEeccCCCc---CCCCccEEE
Q 025428          164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD---GFSCIKFLVDDVLDTK---LERQFQLVM  235 (253)
Q Consensus       164 ~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~---g~~~i~~~~~D~~~~~---~~~~fD~Vi  235 (253)
                      .+.+||++|.| ||..++.+|.. ....|...|-+++.++..++....+   +++.+..+.-++....   ...+||+|+
T Consensus        29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl  108 (201)
T KOG3201|consen   29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL  108 (201)
T ss_pred             hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence            56799999999 66666777666 4458999999999999888876554   3334433333332221   125899999


Q ss_pred             Eccccc
Q 025428          236 DKGTLD  241 (253)
Q Consensus       236 ~~~~l~  241 (253)
                      +..++-
T Consensus       109 aADClF  114 (201)
T KOG3201|consen  109 AADCLF  114 (201)
T ss_pred             eccchh
Confidence            977553

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=92.57  E-value=0.56  Score=41.10  Aligned_cols=78  Identities=14%  Similarity=0.123  Sum_probs=49.3

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh-----cCCC-ceEEEEeccCCCcC----CCC-cc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-----DGFS-CIKFLVDDVLDTKL----ERQ-FQ  232 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~-----~g~~-~i~~~~~D~~~~~~----~~~-fD  232 (253)
                      +..+||++|+|||..+..++......|+..|...-+... +.+...     +++. ++.+...++.+.+.    ... ||
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~L-~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D  164 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVENL-KFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD  164 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHHH-HHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence            456899999999999999998755589988886643332 222222     2222 45555555555431    233 89


Q ss_pred             EEEEccccce
Q 025428          233 LVMDKGTLDA  242 (253)
Q Consensus       233 ~Vi~~~~l~~  242 (253)
                      +|+...++-.
T Consensus       165 lilasDvvy~  174 (248)
T KOG2793|consen  165 LILASDVVYE  174 (248)
T ss_pred             EEEEeeeeec
Confidence            9998766543

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=91.96  E-value=0.11  Score=46.21  Aligned_cols=39  Identities=21%  Similarity=0.251  Sum_probs=34.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHH
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN  201 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~  201 (253)
                      ..+++|||+|||.|.-.+.....|...+...|+|.+.++
T Consensus       115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~  153 (282)
T KOG2920|consen  115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR  153 (282)
T ss_pred             ecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence            467899999999999999999998679999999998873

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=91.79  E-value=0.24  Score=41.68  Aligned_cols=66  Identities=21%  Similarity=0.196  Sum_probs=44.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEe-ccCCCc---------CCCC
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTK---------LERQ  230 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~-D~~~~~---------~~~~  230 (253)
                      .++.+|||+||..|.++....++  +...|.|||+-.-           ..+..+.++++ |+.+..         +..+
T Consensus        68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~  136 (232)
T KOG4589|consen   68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKIFEALPNRP  136 (232)
T ss_pred             CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHHHHhCCCCc
Confidence            57889999999999999998887  3347999998431           11223455555 555431         1256


Q ss_pred             ccEEEEccc
Q 025428          231 FQLVMDKGT  239 (253)
Q Consensus       231 fD~Vi~~~~  239 (253)
                      .|+|++...
T Consensus       137 VdvVlSDMa  145 (232)
T KOG4589|consen  137 VDVVLSDMA  145 (232)
T ss_pred             ccEEEeccC
Confidence            788777554

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=91.77  E-value=0.38  Score=43.73  Aligned_cols=45  Identities=31%  Similarity=0.388  Sum_probs=38.5

Q ss_pred             cCCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       161 ~~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~  205 (253)
                      ..+.+.+||=+|+| .|..+...|+. |+++|+.+|++++.|+.|++
T Consensus       166 ~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  166 GVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             CcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            34678899999999 46666666666 88899999999999999998

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=91.23  E-value=0.76  Score=41.00  Aligned_cols=75  Identities=23%  Similarity=0.344  Sum_probs=58.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC---CCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE---RQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~---~~fD~Vi~~~  238 (253)
                      ..++.|+=+| ---..++.++-.| .++|..+||++..|+...+-++..|+.|++.+.-|+.+..++   .+||+++...
T Consensus       151 L~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDP  229 (354)
T COG1568         151 LEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDP  229 (354)
T ss_pred             cCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCc
Confidence            4678899999 4344444444333 559999999999999999999999998899999999987432   7899988643

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=90.77  E-value=1.4  Score=37.67  Aligned_cols=72  Identities=15%  Similarity=0.259  Sum_probs=55.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----CCCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~~~fD~Vi~  236 (253)
                      .++.+||=+|..+|.....++.- |...++|++.|+.+....-..+++.  .||--+.+|+....-    =+..|+|+.
T Consensus        75 ~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R--~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~  151 (231)
T COG1889          75 KEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR--PNIIPILEDARKPEKYRHLVEKVDVIYQ  151 (231)
T ss_pred             CCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC--CCceeeecccCCcHHhhhhcccccEEEE
Confidence            57889999999999999999987 5448999999998876665555443  478888888876531    156787776

>PRK10458 DNA cytosine methylase; Provisional

Probab=90.39  E-value=1.4  Score=42.30  Aligned_cols=60  Identities=12%  Similarity=0.129  Sum_probs=45.1

Q ss_pred             CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK  226 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~  226 (253)
                      .-+++|+.||.|.+..-+-..|+.-|.++|+++.+.+.-+.|...  ..+...+.+|+.++.
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~--~p~~~~~~~DI~~i~  147 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYC--DPATHRFNEDIRDIT  147 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCC--CCccceeccChhhCc
Confidence            459999999999999999888887788999999888877776421  112344556666653

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=89.49  E-value=0.38  Score=41.80  Aligned_cols=72  Identities=24%  Similarity=0.286  Sum_probs=56.0

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc--C------CC--cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--------
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ--G------FS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------  226 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~--g------~~--~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--------  226 (253)
                      -.+++|++...|.++..|.++  .      ..  .+++||+.+.           .-++.+..+++|+....        
T Consensus        42 v~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M-----------aPI~GV~qlq~DIT~~stae~Ii~h  110 (294)
T KOG1099|consen   42 VKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM-----------APIEGVIQLQGDITSASTAEAIIEH  110 (294)
T ss_pred             hhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC-----------CccCceEEeecccCCHhHHHHHHHH
Confidence            468999999999999999876  1      11  3999999772           23456888999998753        


Q ss_pred             CC-CCccEEEEccccceeccCC
Q 025428          227 LE-RQFQLVMDKGTLDAIGLHP  247 (253)
Q Consensus       227 ~~-~~fD~Vi~~~~l~~i~~~p  247 (253)
                      |. .+.|+|+|.+.-+..++|.
T Consensus       111 fggekAdlVvcDGAPDvTGlHd  132 (294)
T KOG1099|consen  111 FGGEKADLVVCDGAPDVTGLHD  132 (294)
T ss_pred             hCCCCccEEEeCCCCCcccccc
Confidence            34 5899999999888777764

>KOG2912 consensus Predicted DNA methylase [Function unknown]

Probab=89.30  E-value=0.47  Score=43.08  Aligned_cols=74  Identities=19%  Similarity=0.262  Sum_probs=53.3

Q ss_pred             EEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCC--------CcCCCCccEEEE
Q 025428          168 VLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLD--------TKLERQFQLVMD  236 (253)
Q Consensus       168 VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~--------~~~~~~fD~Vi~  236 (253)
                      =+|||+|+-.+--.+...  ++ ..+++|+....+..|+.+...++++ .+.+++.....        ...+..||.++|
T Consensus       106 GiDIgtgasci~~llg~rq~n~-~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~ktll~d~~~~~~e~~ydFcMc  184 (419)
T KOG2912|consen  106 GIDIGTGASCIYPLLGARQNNW-YFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKTLLMDALKEESEIIYDFCMC  184 (419)
T ss_pred             eeeccCchhhhHHhhhchhccc-eeeeeeccccccchhhccccccccccceeeEEecchhhcchhhhccCccceeeEEec
Confidence            479999888776555544  44 7899999999999999999988876 36666553322        111245999999


Q ss_pred             ccccce
Q 025428          237 KGTLDA  242 (253)
Q Consensus       237 ~~~l~~  242 (253)
                      +..|..
T Consensus       185 NPPFfe  190 (419)
T KOG2912|consen  185 NPPFFE  190 (419)
T ss_pred             CCchhh
Confidence            886643

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=89.10  E-value=1.6  Score=40.85  Aligned_cols=30  Identities=10%  Similarity=0.163  Sum_probs=23.2

Q ss_pred             eccCCCcCC-CCccEEEEccccceeccCCCC
Q 025428          220 DDVLDTKLE-RQFQLVMDKGTLDAIGLHPDG  249 (253)
Q Consensus       220 ~D~~~~~~~-~~fD~Vi~~~~l~~i~~~pd~  249 (253)
                      |.+..-.+| ++.+++++...|||+.--|+.
T Consensus       151 GSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~  181 (386)
T PLN02668        151 GSFYRRLFPARSIDVFHSAFSLHWLSQVPES  181 (386)
T ss_pred             ccccccccCCCceEEEEeeccceecccCchh
Confidence            455554455 899999999999999876764

>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus

Probab=88.90  E-value=1.3  Score=33.28  Aligned_cols=57  Identities=18%  Similarity=0.267  Sum_probs=40.5

Q ss_pred             CCCcHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----C-CCccEEEE
Q 025428          173 TGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----E-RQFQLVMD  236 (253)
Q Consensus       173 cGtG~~~~~la~~---g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~-~~fD~Vi~  236 (253)
                      ||.|.++..+++.   +..+|+.+|.+++.++.+++.       .+.++.||..+...    . ...+.|++
T Consensus         4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~-------~~~~i~gd~~~~~~l~~a~i~~a~~vv~   68 (116)
T PF02254_consen    4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE-------GVEVIYGDATDPEVLERAGIEKADAVVI   68 (116)
T ss_dssp             ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT-------TSEEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred             EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc-------ccccccccchhhhHHhhcCccccCEEEE
Confidence            5667777777765   334899999999998888764       36799999988642    2 56777765

The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=88.50  E-value=1.1  Score=41.65  Aligned_cols=71  Identities=14%  Similarity=0.091  Sum_probs=59.5

Q ss_pred             HHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc
Q 025428          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK  226 (253)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~  226 (253)
                      ...+..+.++.+|+|..|-.|.-+..++..  .-.++.|+|.+..-.+..++.+...|...++...+|+...+
T Consensus       205 pA~ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~  277 (413)
T KOG2360|consen  205 PAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTA  277 (413)
T ss_pred             hhhhcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCC
Confidence            344455577899999999999998888875  23489999999999999999999999888888899998853

>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine

Probab=87.89  E-value=4.1  Score=37.23  Aligned_cols=84  Identities=13%  Similarity=0.158  Sum_probs=45.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc------------C------CCcEEEEeCCHHHHH-HHHH------HHHhcCCCc--eE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ------------G------FSDLTGVDYSEDAIN-LAQS------LANRDGFSC--IK  216 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~------------g------~~~v~gvD~s~~~l~-~ar~------~~~~~g~~~--i~  216 (253)
                      +.-+|+|+||..|..++.+...            +      + +|+--|.-.+=-. +.+.      ....  ..+  +.
T Consensus        16 ~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~-~v~~nDlP~NDFn~lF~~l~~~~~~~~~--~~~~f~~   92 (334)
T PF03492_consen   16 KPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEF-QVFFNDLPSNDFNTLFKSLPSFQQSLKK--FRNYFVS   92 (334)
T ss_dssp             TEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EE-EEEEEE-TTS-HHHHHHCHHHHHHHHHH--TTSEEEE
T ss_pred             CceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeE-EEEeCCCCCccHHHHHHhChhhhhccCC--CceEEEE
Confidence            4459999999999988777642            1      1 6777776332111 1111      1111  112  44


Q ss_pred             EEEeccCCCcCC-CCccEEEEccccceeccCCCCC
Q 025428          217 FLVDDVLDTKLE-RQFQLVMDKGTLDAIGLHPDGP  250 (253)
Q Consensus       217 ~~~~D~~~~~~~-~~fD~Vi~~~~l~~i~~~pd~~  250 (253)
                      -+-+.+..-.+| ++.|++++..+|||+.-.|..-
T Consensus        93 gvpgSFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l  127 (334)
T PF03492_consen   93 GVPGSFYGRLFPSNSVHFGHSSYALHWLSQVPEEL  127 (334)
T ss_dssp             EEES-TTS--S-TT-EEEEEEES-TTB-SSS-CCC
T ss_pred             ecCchhhhccCCCCceEEEEEechhhhcccCCccc
Confidence            456777766666 8999999999999998777653

Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=87.73  E-value=0.17  Score=48.26  Aligned_cols=75  Identities=19%  Similarity=0.209  Sum_probs=60.5

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcC-----CCCcc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-----ERQFQ  232 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~-----~~~fD  232 (253)
                      ...++-+|||.=|+||.-++..++.  |..+|++.|.++..++..+.|.+.++..+ ++..++|+..+-.     ...||
T Consensus       106 ~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FD  185 (525)
T KOG1253|consen  106 REEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFD  185 (525)
T ss_pred             hccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccc
Confidence            3356679999999999999999988  66699999999999999999999988765 6777777755421     25677


Q ss_pred             EEE
Q 025428          233 LVM  235 (253)
Q Consensus       233 ~Vi  235 (253)
                      +|=
T Consensus       186 vID  188 (525)
T KOG1253|consen  186 VID  188 (525)
T ss_pred             eEe
Confidence            664

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=87.40  E-value=2.2  Score=41.13  Aligned_cols=78  Identities=22%  Similarity=0.304  Sum_probs=54.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc---C--CCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc-C--CCCccE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ---G--FSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK-L--ERQFQL  233 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~---g--~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~-~--~~~fD~  233 (253)
                      +...|.|..||+|.++....+.   |  ...++|-+....|...|+.++...+..  ......+|-...+ .  ..+||.
T Consensus       217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~  296 (501)
T TIGR00497       217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV  296 (501)
T ss_pred             CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence            5578999999999998765432   2  136999999999999999987665542  2344455544322 2  256999


Q ss_pred             EEEccccc
Q 025428          234 VMDKGTLD  241 (253)
Q Consensus       234 Vi~~~~l~  241 (253)
                      |+++..+.
T Consensus       297 v~~NpPf~  304 (501)
T TIGR00497       297 VVSNPPYS  304 (501)
T ss_pred             EeecCCcc
Confidence            98877554

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=86.12  E-value=1.6  Score=40.24  Aligned_cols=46  Identities=22%  Similarity=0.290  Sum_probs=38.3

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      ...++.+||.+|||. |.++..+++. |..+++++|.++++++.+++.
T Consensus       181 ~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~  228 (386)
T cd08283         181 EVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH  228 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            345678999999987 8888888887 554699999999999988875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=85.80  E-value=2  Score=38.75  Aligned_cols=44  Identities=27%  Similarity=0.404  Sum_probs=33.5

Q ss_pred             CCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       163 ~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      .++.+||=+||| .|.++..+++. |+.+|+++|.+++.++.+++.
T Consensus       168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~l  213 (343)
T PRK09880        168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREM  213 (343)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHc
Confidence            357788888875 45566666666 666799999999998888763

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=85.75  E-value=1  Score=38.33  Aligned_cols=60  Identities=18%  Similarity=0.250  Sum_probs=34.5

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-----CCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCC
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-----GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDT  225 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-----g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~  225 (253)
                      +...|+++|.-.|.-+..+|+.     +..+|+|||++-.......  .+...+ ++|++++||..+.
T Consensus        32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a--~e~hp~~~rI~~i~Gds~d~   97 (206)
T PF04989_consen   32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKA--IESHPMSPRITFIQGDSIDP   97 (206)
T ss_dssp             --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-G--GGG----TTEEEEES-SSST
T ss_pred             CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHH--HhhccccCceEEEECCCCCH
Confidence            6689999999999999888763     3359999999543322111  111111 3799999999775

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=85.67  E-value=1.6  Score=39.95  Aligned_cols=44  Identities=34%  Similarity=0.402  Sum_probs=37.1

Q ss_pred             CCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          163 LSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       163 ~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      .++.+|+=+||| .|.++..+++. |+++|+.+|.+++-++.|++.
T Consensus       167 ~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~  212 (350)
T COG1063         167 RPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEA  212 (350)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHh
Confidence            344599999999 57777777776 888999999999999999985

>PTZ00357 methyltransferase; Provisional

Probab=85.66  E-value=3  Score=41.84  Aligned_cols=71  Identities=14%  Similarity=0.235  Sum_probs=48.8

Q ss_pred             CEEEEEcCCCcHHHHHHHhc----CCC-cEEEEeCCHHHHHHHHHHHH-hcCCC--------ceEEEEeccCCCcCC---
Q 025428          166 WSVLDIGTGNGLLLQELSKQ----GFS-DLTGVDYSEDAINLAQSLAN-RDGFS--------CIKFLVDDVLDTKLE---  228 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~----g~~-~v~gvD~s~~~l~~ar~~~~-~~g~~--------~i~~~~~D~~~~~~~---  228 (253)
                      ..|+=+|+|-|-+.....+.    |.+ +|++|+.|+..+...+.+.. .....        .|+++..|++++..+   
T Consensus       702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~  781 (1072)
T PTZ00357        702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAEN  781 (1072)
T ss_pred             EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccccccccc
Confidence            36899999999986555443    333 89999999765544444432 12221        389999999998532   


Q ss_pred             ---------CCccEEEE
Q 025428          229 ---------RQFQLVMD  236 (253)
Q Consensus       229 ---------~~fD~Vi~  236 (253)
                               +++|+||+
T Consensus       782 ~s~~~P~~~gKaDIVVS  798 (1072)
T PTZ00357        782 GSLTLPADFGLCDLIVS  798 (1072)
T ss_pred             ccccccccccccceehH
Confidence                     37999987

>COG4798 Predicted methyltransferase [General function prediction only]

Probab=85.51  E-value=1.5  Score=37.24  Aligned_cols=85  Identities=12%  Similarity=0.100  Sum_probs=57.0

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhc-CCC-cEEEEeCCHHHH----HHHHHH--HHhcCCCceEEEEeccCCCcCCCCcc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFS-DLTGVDYSEDAI----NLAQSL--ANRDGFSCIKFLVDDVLDTKLERQFQ  232 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~-g~~-~v~gvD~s~~~l----~~ar~~--~~~~g~~~i~~~~~D~~~~~~~~~fD  232 (253)
                      .++++.+|+|+--|.|.++..|+.. |.+ .|+++=..+...    +..+.+  .+.....|.+.+-.+...+..++..|
T Consensus        45 Glkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d  124 (238)
T COG4798          45 GLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLD  124 (238)
T ss_pred             ccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCccc
Confidence            3468899999999999999999987 432 666665444311    111111  12234457777777777777668899


Q ss_pred             EEEEccccceecc
Q 025428          233 LVMDKGTLDAIGL  245 (253)
Q Consensus       233 ~Vi~~~~l~~i~~  245 (253)
                      +++.+...|-++.
T Consensus       125 ~~~~~~~yhdmh~  137 (238)
T COG4798         125 LVPTAQNYHDMHN  137 (238)
T ss_pred             ccccchhhhhhhc
Confidence            9998777666543

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=85.37  E-value=0.59  Score=41.18  Aligned_cols=82  Identities=20%  Similarity=0.280  Sum_probs=52.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC----------------------------Cc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF----------------------------SC  214 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~----------------------------~~  214 (253)
                      .++.++||||||.-.+-..-+..-+.+++..|+++..++..++-++..+.                            ..
T Consensus        55 ~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~  134 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRA  134 (256)
T ss_dssp             S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHh
Confidence            35679999999997765444444477999999999998876665543210                            01


Q ss_pred             e-EEEEeccCCCcC-------CCCccEEEEccccceec
Q 025428          215 I-KFLVDDVLDTKL-------ERQFQLVMDKGTLDAIG  244 (253)
Q Consensus       215 i-~~~~~D~~~~~~-------~~~fD~Vi~~~~l~~i~  244 (253)
                      | +++..|+.+.++       +.+||+|++..+|+.+.
T Consensus       135 Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~  172 (256)
T PF01234_consen  135 VKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESAC  172 (256)
T ss_dssp             EEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-
T ss_pred             hceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHc
Confidence            3 477889987642       23599999999988763

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised

Probab=84.57  E-value=3.6  Score=38.38  Aligned_cols=49  Identities=16%  Similarity=-0.006  Sum_probs=37.8

Q ss_pred             hccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH
Q 025428          159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN  208 (253)
Q Consensus       159 l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~  208 (253)
                      +.+..++.+||-|.+|-...+-++... .++|++||+|+..+...+=+.+
T Consensus        30 aL~i~~~d~vl~ItSaG~N~L~yL~~~-P~~I~aVDlNp~Q~aLleLKlA   78 (380)
T PF11899_consen   30 ALNIGPDDRVLTITSAGCNALDYLLAG-PKRIHAVDLNPAQNALLELKLA   78 (380)
T ss_pred             HhCCCCCCeEEEEccCCchHHHHHhcC-CceEEEEeCCHHHHHHHHHHHH
Confidence            334468889999998877777776655 6699999999998887766543

This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.

>COG0863 DNA modification methylase [DNA replication, recombination, and repair]

Probab=84.32  E-value=3  Score=36.66  Aligned_cols=47  Identities=17%  Similarity=0.184  Sum_probs=42.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~  210 (253)
                      ..+..|||.-+|+|..+......|- +++|+|++++-++.+.+++...
T Consensus       221 ~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~~  267 (302)
T COG0863         221 FPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQEG  267 (302)
T ss_pred             CCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHhh
Confidence            5788999999999999999988855 9999999999999999998754

>PRK08339 short chain dehydrogenase; Provisional

Probab=84.23  E-value=7.2  Score=33.73  Aligned_cols=74  Identities=12%  Similarity=0.208  Sum_probs=50.0

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C-CC
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E-RQ  230 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~-~~  230 (253)
                      +++++|-.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+....-.++.++.+|+.+..-         . +.
T Consensus         7 ~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~g~   85 (263)
T PRK08339          7 SGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKELKNIGE   85 (263)
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHHHhhCC
Confidence            56788888876554   3455666677 899999998887776665543211368889999887531         1 45


Q ss_pred             ccEEEEcc
Q 025428          231 FQLVMDKG  238 (253)
Q Consensus       231 fD~Vi~~~  238 (253)
                      .|+++.+.
T Consensus        86 iD~lv~na   93 (263)
T PRK08339         86 PDIFFFST   93 (263)
T ss_pred             CcEEEECC
Confidence            78777654

>PRK07904 short chain dehydrogenase; Provisional

Probab=83.92  E-value=5.8  Score=34.16  Aligned_cols=73  Identities=15%  Similarity=0.198  Sum_probs=46.8

Q ss_pred             CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHH-HHHHHHHHHhcCCCceEEEEeccCCCc-----CC-----
Q 025428          164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDA-INLAQSLANRDGFSCIKFLVDDVLDTK-----LE-----  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~-l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~~-----  228 (253)
                      .+.+||-.|++ |.++..++    ++|..+|+.++.+++- ++.+.+.++..+..++.++.+|+.+..     ..     
T Consensus         7 ~~~~vlItGas-~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~   85 (253)
T PRK07904          7 NPQTILLLGGT-SEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTDSHPKVIDAAFAG   85 (253)
T ss_pred             CCcEEEEEcCC-cHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChHHHHHHHHHHHhc
Confidence            45678888874 44444444    4443389999998764 665555555544347899999987643     11     


Q ss_pred             CCccEEEEc
Q 025428          229 RQFQLVMDK  237 (253)
Q Consensus       229 ~~fD~Vi~~  237 (253)
                      +..|+++.+
T Consensus        86 g~id~li~~   94 (253)
T PRK07904         86 GDVDVAIVA   94 (253)
T ss_pred             CCCCEEEEe
Confidence            468877754

>PRK08703 short chain dehydrogenase; Provisional

Probab=83.71  E-value=9.7  Score=32.05  Aligned_cols=59  Identities=14%  Similarity=0.074  Sum_probs=38.8

Q ss_pred             CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC
Q 025428          164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD  224 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~  224 (253)
                      +++++|-.|| +|.++..    ++++|. +|++++.++..++...+.+...+-..+.++..|+.+
T Consensus         5 ~~k~vlItG~-sggiG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~   67 (239)
T PRK08703          5 SDKTILVTGA-SQGLGEQVAKAYAAAGA-TVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLMS   67 (239)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHcCC-EEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeecc
Confidence            5578999985 4444444    444566 899999999877766665544332345677777754

>PRK07523 gluconate 5-dehydrogenase; Provisional

Probab=83.34  E-value=7.2  Score=33.21  Aligned_cols=73  Identities=14%  Similarity=0.142  Sum_probs=49.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428          164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~  228 (253)
                      .++++|=.|+ +|.++..++    ++|+ +|++++.++..++...+.+...+. ++.++.+|+.+...           -
T Consensus         9 ~~k~vlItGa-~g~iG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~   85 (255)
T PRK07523          9 TGRRALVTGS-SQGIGYALAEGLAQAGA-EVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDAFEAEI   85 (255)
T ss_pred             CCCEEEEECC-cchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            5678888885 555555544    4577 899999998877766666654443 57888899877421           1


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      +..|+++.+..
T Consensus        86 ~~~d~li~~ag   96 (255)
T PRK07523         86 GPIDILVNNAG   96 (255)
T ss_pred             CCCCEEEECCC
Confidence            45788776553

>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=83.13  E-value=2  Score=37.29  Aligned_cols=62  Identities=23%  Similarity=0.237  Sum_probs=49.2

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK  226 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~  226 (253)
                      ...-|++||.|.|.++..+...|..+...++++...+.-.+...+... .++.+.++|+..+.
T Consensus        50 ~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~~  111 (326)
T KOG0821|consen   50 TNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRFK  111 (326)
T ss_pred             ccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC-cceEEeccccceeh
Confidence            567899999999999999999988899999999887776665554332 26778888887654

>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length

Probab=82.74  E-value=7.5  Score=33.38  Aligned_cols=83  Identities=11%  Similarity=0.106  Sum_probs=52.2

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcH----HHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCC-Cc
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGL----LLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLD-TK  226 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~----~~~~la~-~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~-~~  226 (253)
                      +++..+..-..-+.++++.|+-|.    +++..|. +-..++++|-..+..+...++.+...++.+ ++|+.++..+ +.
T Consensus        31 EfISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~  110 (218)
T PF07279_consen   31 EFISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVM  110 (218)
T ss_pred             HHHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHH
Confidence            444444443455689999766442    3333333 323389999999988888888887777765 6999888533 22


Q ss_pred             CC-CCccEEEE
Q 025428          227 LE-RQFQLVMD  236 (253)
Q Consensus       227 ~~-~~fD~Vi~  236 (253)
                      .. ...|+++.
T Consensus       111 ~~~~~iDF~vV  121 (218)
T PF07279_consen  111 PGLKGIDFVVV  121 (218)
T ss_pred             hhccCCCEEEE
Confidence            12 55676664

The function of this family is unknown.

>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E

Probab=82.72  E-value=3.7  Score=34.58  Aligned_cols=33  Identities=30%  Similarity=0.269  Sum_probs=26.2

Q ss_pred             CCCEEEEEcCC-CcH-HHHHHHhcCCCcEEEEeCC
Q 025428          164 SSWSVLDIGTG-NGL-LLQELSKQGFSDLTGVDYS  196 (253)
Q Consensus       164 ~~~~VLDiGcG-tG~-~~~~la~~g~~~v~gvD~s  196 (253)
                      ...+||=+||| .|. ++..|+..|..+++.+|.+
T Consensus        20 ~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d   54 (202)
T TIGR02356        20 LNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD   54 (202)
T ss_pred             cCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence            56799999998 344 5667777798899999976

coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.

>PRK05867 short chain dehydrogenase; Provisional

Probab=82.42  E-value=8.5  Score=32.78  Aligned_cols=75  Identities=12%  Similarity=0.109  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~  229 (253)
                      +++++|-.|++.|.   ++..|+++|+ +|+.++.+++.++...+.++..+ .++.++.+|+.+...           -+
T Consensus         8 ~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T PRK05867          8 HGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQVTAELG   85 (253)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            56789988876553   3455556677 89999999888777766665544 367788899876421           14


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      +.|+++.+...
T Consensus        86 ~id~lv~~ag~   96 (253)
T PRK05867         86 GIDIAVCNAGI   96 (253)
T ss_pred             CCCEEEECCCC
Confidence            68888876543

>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]

Probab=82.28  E-value=5.9  Score=35.66  Aligned_cols=74  Identities=23%  Similarity=0.263  Sum_probs=59.4

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------C-
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------E-  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------~-  228 (253)
                      -.+..||-=|+|.|.   ++..+|++|+ +++..|++++..+...+.+++.|  ++.....|+.+...          + 
T Consensus        36 v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g--~~~~y~cdis~~eei~~~a~~Vk~e~  112 (300)
T KOG1201|consen   36 VSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIG--EAKAYTCDISDREEIYRLAKKVKKEV  112 (300)
T ss_pred             ccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcC--ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence            367899999998886   5788888877 89999999999988888887766  78888899877531          2 


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      +..|+++.|.-
T Consensus       113 G~V~ILVNNAG  123 (300)
T KOG1201|consen  113 GDVDILVNNAG  123 (300)
T ss_pred             CCceEEEeccc
Confidence            67888888763

>PRK06124 gluconate 5-dehydrogenase; Provisional

Probab=82.08  E-value=10  Score=32.29  Aligned_cols=73  Identities=15%  Similarity=0.118  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428          164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~  228 (253)
                      +++++|-.|+ +|.++..    |+++|+ +|+.++.+++.++...+.++..+. ++.++.+|+.+...           -
T Consensus        10 ~~k~ilItGa-s~~IG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~~~~~   86 (256)
T PRK06124         10 AGQVALVTGS-ARGLGFEIARALAGAGA-HVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFARIDAEH   86 (256)
T ss_pred             CCCEEEEECC-CchHHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhc
Confidence            5678888885 4444444    445577 899999998877766665555443 57889999876421           1


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      ++.|.++.+..
T Consensus        87 ~~id~vi~~ag   97 (256)
T PRK06124         87 GRLDILVNNVG   97 (256)
T ss_pred             CCCCEEEECCC
Confidence            45688776543

>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes

Probab=82.00  E-value=2.8  Score=36.14  Aligned_cols=45  Identities=16%  Similarity=0.162  Sum_probs=33.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR  209 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~  209 (253)
                      ...+++|+-||+|.++..+... ...|+.-|+++..+...+..++.
T Consensus        20 ~~~~~vepF~G~g~V~~~~~~~-~~~vi~ND~~~~l~~~~~~~l~~   64 (260)
T PF02086_consen   20 KHKTYVEPFAGGGSVFLNLKQP-GKRVIINDINPDLINFWKAVLKN   64 (260)
T ss_dssp             S-SEEEETT-TTSHHHHCC----SSEEEEEES-HHHHHHHHHHHHH
T ss_pred             CCCEEEEEecchhHHHHHhccc-ccceeeeechHHHHHHHHHHHhc
Confidence            5689999999999999999776 44899999999988888755543

There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.

>PRK08213 gluconate 5-dehydrogenase; Provisional

Probab=81.79  E-value=8.9  Score=32.72  Aligned_cols=73  Identities=15%  Similarity=0.156  Sum_probs=50.4

Q ss_pred             CCCEEEEEcCCCcHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428          164 SSWSVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~----~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~  228 (253)
                      +++++|=.| |+|.++..+++    +|+ +|+.++.+...++...+.+...+. ++.++.+|+.+...           .
T Consensus        11 ~~k~ilItG-a~g~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~~~~~~   87 (259)
T PRK08213         11 SGKTALVTG-GSRGLGLQIAEALGEAGA-RVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEETLERF   87 (259)
T ss_pred             CCCEEEEEC-CCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            567888888 56666666554    476 899999998877776666554432 67889999987431           1


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      +..|.|+.+..
T Consensus        88 ~~id~vi~~ag   98 (259)
T PRK08213         88 GHVDILVNNAG   98 (259)
T ss_pred             CCCCEEEECCC
Confidence            35788877643

>PRK07326 short chain dehydrogenase; Provisional

Probab=81.77  E-value=7.8  Score=32.45  Aligned_cols=71  Identities=13%  Similarity=0.161  Sum_probs=46.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----CC------
Q 025428          164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LE------  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~~------  228 (253)
                      .+.++|-+|+ +|.++..++    ++|+ +|++++.++..+....+.+...  .++.++.+|+.+..     +.      
T Consensus         5 ~~~~ilItGa-tg~iG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (237)
T PRK07326          5 KGKVALITGG-SKGIGFAIAEALLAEGY-KVAITARDQKELEEAAAELNNK--GNVLGLAADVRDEADVQRAVDAIVAAF   80 (237)
T ss_pred             CCCEEEEECC-CCcHHHHHHHHHHHCCC-EEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            3567888884 666655554    4466 7999999987766665544332  36788999987642     11      


Q ss_pred             CCccEEEEcc
Q 025428          229 RQFQLVMDKG  238 (253)
Q Consensus       229 ~~fD~Vi~~~  238 (253)
                      +.+|+|+...
T Consensus        81 ~~~d~vi~~a   90 (237)
T PRK07326         81 GGLDVLIANA   90 (237)
T ss_pred             CCCCEEEECC
Confidence            3578887653

>PRK07102 short chain dehydrogenase; Provisional

Probab=81.71  E-value=7.9  Score=32.69  Aligned_cols=71  Identities=15%  Similarity=0.071  Sum_probs=45.3

Q ss_pred             CEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC--------CCCccE
Q 025428          166 WSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------ERQFQL  233 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~--------~~~fD~  233 (253)
                      +++|-.| |+|.++..++    ++|. +|++++.+++-.+...+.+...+-.++.++.+|+.+...        ...+|+
T Consensus         2 ~~vlItG-as~giG~~~a~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~d~   79 (243)
T PRK07102          2 KKILIIG-ATSDIARACARRYAAAGA-RLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAFLDSLPALPDI   79 (243)
T ss_pred             cEEEEEc-CCcHHHHHHHHHHHhcCC-EEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHHHHHHhhcCCE
Confidence            3677677 4555555444    4466 899999998776655444433333478899999987531        134688


Q ss_pred             EEEcc
Q 025428          234 VMDKG  238 (253)
Q Consensus       234 Vi~~~  238 (253)
                      ++.+.
T Consensus        80 vv~~a   84 (243)
T PRK07102         80 VLIAV   84 (243)
T ss_pred             EEECC
Confidence            77543

>PRK06125 short chain dehydrogenase; Provisional

Probab=81.15  E-value=11  Score=32.11  Aligned_cols=74  Identities=14%  Similarity=0.163  Sum_probs=48.8

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C--CCCccE
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L--ERQFQL  233 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~--~~~fD~  233 (253)
                      .++++|=.|++.|.   +...|+++|+ +|++++.+++.++...+.+....-.++.++..|+.+..     +  -+..|+
T Consensus         6 ~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~g~id~   84 (259)
T PRK06125          6 AGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDADALEALAADLRAAHGVDVAVHALDLSSPEAREQLAAEAGDIDI   84 (259)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHHhCCCCE
Confidence            46788888865442   2334555677 99999999987777666554432236788889987642     1  156788


Q ss_pred             EEEcc
Q 025428          234 VMDKG  238 (253)
Q Consensus       234 Vi~~~  238 (253)
                      ++.+.
T Consensus        85 lv~~a   89 (259)
T PRK06125         85 LVNNA   89 (259)
T ss_pred             EEECC
Confidence            77654

>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional

Probab=81.01  E-value=9.4  Score=32.33  Aligned_cols=75  Identities=13%  Similarity=0.145  Sum_probs=49.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----------C-
Q 025428          163 LSSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----------L-  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----------~-  227 (253)
                      .+++++|=.|+ +|.++..++    +.|+ +|++++.++..++...+.+...+..++.++..|+....          . 
T Consensus        10 ~~~k~vlItG~-~g~iG~~la~~l~~~G~-~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (247)
T PRK08945         10 LKDRIILVTGA-GDGIGREAALTYARHGA-TVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLLTATPQNYQQLADTIE   87 (247)
T ss_pred             cCCCEEEEeCC-CchHHHHHHHHHHHCCC-cEEEEeCCHHHHHHHHHHHHhcCCCCceEEEecccCCCHHHHHHHHHHHH
Confidence            46778898885 555555444    4466 99999999887766666555544446777777775321          0 


Q ss_pred             --CCCccEEEEccc
Q 025428          228 --ERQFQLVMDKGT  239 (253)
Q Consensus       228 --~~~fD~Vi~~~~  239 (253)
                        -++.|.|+.+..
T Consensus        88 ~~~~~id~vi~~Ag  101 (247)
T PRK08945         88 EQFGRLDGVLHNAG  101 (247)
T ss_pred             HHhCCCCEEEECCc
Confidence              146788887553

>PRK08862 short chain dehydrogenase; Provisional

Probab=80.97  E-value=9.4  Score=32.40  Aligned_cols=73  Identities=11%  Similarity=0.053  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C-----C-C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L-----E-R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~-----~-~  229 (253)
                      +++++|=.|++.|.   ++..|+++|+ +|+.++.+++.++...+.+...+. ++..+..|..+..     +     . +
T Consensus         4 ~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g   81 (227)
T PRK08862          4 KSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQSALKDTYEQCSALTD-NVYSFQLKDFSQESIRHLFDAIEQQFN   81 (227)
T ss_pred             CCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCC-CeEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            46789999988876   5666777777 899999999988877766655543 4666777776542     0     1 3


Q ss_pred             -CccEEEEcc
Q 025428          230 -QFQLVMDKG  238 (253)
Q Consensus       230 -~fD~Vi~~~  238 (253)
                       ..|+++.+.
T Consensus        82 ~~iD~li~na   91 (227)
T PRK08862         82 RAPDVLVNNW   91 (227)
T ss_pred             CCCCEEEECC
Confidence             688888765

>PRK07890 short chain dehydrogenase; Provisional

Probab=80.91  E-value=12  Score=31.84  Aligned_cols=73  Identities=12%  Similarity=0.128  Sum_probs=48.4

Q ss_pred             CCCEEEEEcCCCcHHHH----HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------C-
Q 025428          164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------E-  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~----~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------~-  228 (253)
                      .++++|=.|++ |.++.    .|+++|+ +|++++.++..++...+.+...+ .++.++..|+.+...          . 
T Consensus         4 ~~k~vlItGa~-~~IG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   80 (258)
T PRK07890          4 KGKVVVVSGVG-PGLGRTLAVRAARAGA-DVVLAARTAERLDEVAAEIDDLG-RRALAVPTDITDEDQCANLVALALERF   80 (258)
T ss_pred             CCCEEEEECCC-CcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHhC-CceEEEecCCCCHHHHHHHHHHHHHHc
Confidence            45678877764 44444    4555677 89999999987776666554444 267889999876421          1 


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      +..|+|+.+..
T Consensus        81 g~~d~vi~~ag   91 (258)
T PRK07890         81 GRVDALVNNAF   91 (258)
T ss_pred             CCccEEEECCc
Confidence            45788877553

>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases

Probab=80.90  E-value=8.4  Score=30.28  Aligned_cols=73  Identities=18%  Similarity=0.276  Sum_probs=49.6

Q ss_pred             EEEEEcCCCcH---HHHHHHhcCCCcEEEEeCC--HHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCC
Q 025428          167 SVLDIGTGNGL---LLQELSKQGFSDLTGVDYS--EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ  230 (253)
Q Consensus       167 ~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s--~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~  230 (253)
                      ++|=.|++.|.   ++..|+++|...|+.+..+  .+.++.....++..+ .++.+++.|+.+...           .++
T Consensus         2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~   80 (167)
T PF00106_consen    2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRFGP   80 (167)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHHSS
T ss_pred             EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence            56667766543   3445555567689999998  666666666666556 589999999877521           257


Q ss_pred             ccEEEEcccc
Q 025428          231 FQLVMDKGTL  240 (253)
Q Consensus       231 fD~Vi~~~~l  240 (253)
                      +|+++.+..+
T Consensus        81 ld~li~~ag~   90 (167)
T PF00106_consen   81 LDILINNAGI   90 (167)
T ss_dssp             ESEEEEECSC
T ss_pred             cccccccccc
Confidence            8888865433

As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....

>PRK05876 short chain dehydrogenase; Provisional

Probab=80.84  E-value=10  Score=33.06  Aligned_cols=75  Identities=15%  Similarity=0.209  Sum_probs=49.5

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~  229 (253)
                      .++++|-.|++.|.   ++..|+++|+ +|+.++.++..++...+.+...+. ++.++..|+.+...           -+
T Consensus         5 ~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g   82 (275)
T PRK05876          5 PGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEAFRLLG   82 (275)
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHHHHHcC
Confidence            45678877765443   2344555677 899999998877766655554443 57888899876431           13


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus        83 ~id~li~nAg~   93 (275)
T PRK05876         83 HVDVVFSNAGI   93 (275)
T ss_pred             CCCEEEECCCc
Confidence            57888876543

>PRK06172 short chain dehydrogenase; Provisional

Probab=80.78  E-value=12  Score=31.84  Aligned_cols=73  Identities=14%  Similarity=0.124  Sum_probs=49.1

Q ss_pred             CCCEEEEEcCCCcHHHH----HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428          164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~----~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~  228 (253)
                      +++++|-.|++. .++.    .|++.|. +|+.++.+++-++...+.++..+ .++.++.+|+.+..-           -
T Consensus         6 ~~k~ilItGas~-~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~~~~~   82 (253)
T PRK06172          6 SGKVALVTGGAA-GIGRATALAFAREGA-KVVVADRDAAGGEETVALIREAG-GEALFVACDVTRDAEVKALVEQTIAAY   82 (253)
T ss_pred             CCCEEEEeCCCc-hHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence            467888888644 4443    4445576 89999999887776666555444 268899999976420           1


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      +++|+++.+..
T Consensus        83 g~id~li~~ag   93 (253)
T PRK06172         83 GRLDYAFNNAG   93 (253)
T ss_pred             CCCCEEEECCC
Confidence            35788887653

>PRK09291 short chain dehydrogenase; Provisional

Probab=80.57  E-value=14  Score=31.24  Aligned_cols=71  Identities=15%  Similarity=0.254  Sum_probs=46.1

Q ss_pred             CEEEEEcCCCcHHHHHH----HhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----CCCCccEEEE
Q 025428          166 WSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQLVMD  236 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~l----a~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~~~~fD~Vi~  236 (253)
                      ++||-.|++ |.++..+    +.+|+ +|++++.++..++..++.....+. ++.++.+|+.+..     .....|+|+.
T Consensus         3 ~~vlVtGas-g~iG~~ia~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~id~vi~   79 (257)
T PRK09291          3 KTILITGAG-SGFGREVALRLARKGH-NVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQAAEWDVDVLLN   79 (257)
T ss_pred             CEEEEeCCC-CHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHHHhcCCCCEEEE
Confidence            467777764 4444444    44566 899999988766665555444443 5888999987753     1246888887


Q ss_pred             ccc
Q 025428          237 KGT  239 (253)
Q Consensus       237 ~~~  239 (253)
                      +..
T Consensus        80 ~ag   82 (257)
T PRK09291         80 NAG   82 (257)
T ss_pred             CCC
Confidence            543

>PRK07677 short chain dehydrogenase; Provisional

Probab=80.22  E-value=11  Score=31.94  Aligned_cols=71  Identities=10%  Similarity=0.143  Sum_probs=46.9

Q ss_pred             CEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCCc
Q 025428          166 WSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQF  231 (253)
Q Consensus       166 ~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~f  231 (253)
                      +++|-.|++.|.   ++..++++|. +|++++.++..++...+.+...+ .++.++.+|+.+...           -+..
T Consensus         2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i   79 (252)
T PRK07677          2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI   79 (252)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence            467877775542   3444555677 89999999887776666554433 368889999876420           1457


Q ss_pred             cEEEEcc
Q 025428          232 QLVMDKG  238 (253)
Q Consensus       232 D~Vi~~~  238 (253)
                      |+++.+.
T Consensus        80 d~lI~~a   86 (252)
T PRK07677         80 DALINNA   86 (252)
T ss_pred             cEEEECC
Confidence            8888654

>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases

Probab=80.16  E-value=5  Score=31.42  Aligned_cols=72  Identities=19%  Similarity=0.190  Sum_probs=44.2

Q ss_pred             CCCCEEEEEcCC-Cc-HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-CCCCccEEEEccc
Q 025428          163 LSSWSVLDIGTG-NG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcG-tG-~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-~~~~fD~Vi~~~~  239 (253)
                      .++.++|=+|+| .| .....|+..|+++++.+..+.+-.+...+.+   +-.++.+...  .++. ....+|+|+..-.
T Consensus        10 l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~~~~~~~~~--~~~~~~~~~~DivI~aT~   84 (135)
T PF01488_consen   10 LKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GGVNIEAIPL--EDLEEALQEADIVINATP   84 (135)
T ss_dssp             GTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TGCSEEEEEG--GGHCHHHHTESEEEE-SS
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---CccccceeeH--HHHHHHHhhCCeEEEecC
Confidence            477899999997 22 2345555668888999999986555444443   2124444433  3332 1257898887543

Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	253
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	6e-23
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	7e-11
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	2e-10
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	6e-10
2p7i_A	250	Hypothetical protein; putative methyltransferase,	7e-10
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	2e-09
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	3e-09
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	5e-09
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	7e-09
3cc8_A	230	Putative methyltransferase; structural genomics, j	1e-08
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	2e-08
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	3e-08
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	3e-08
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	5e-08
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	6e-08
3lcc_A	235	Putative methyl chloride transferase; halide methy	7e-08
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	2e-07
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	2e-07
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	2e-07
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	3e-07
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	5e-07
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	6e-07
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	9e-07
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-06
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	1e-06
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	1e-06
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	2e-06
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	2e-06
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	3e-06
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	3e-06
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	4e-06
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	5e-06
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	7e-06
3ocj_A	305	Putative exported protein; structural genomics, PS	7e-06
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	8e-06
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	9e-06
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	1e-05
2b3t_A	276	Protein methyltransferase HEMK; translation termin	2e-05
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	2e-05
3f4k_A	257	Putative methyltransferase; structural genomics, P	2e-05
1xxl_A	239	YCGJ protein; structural genomics, protein structu	3e-05
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	5e-05
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	6e-05
3lpm_A	259	Putative methyltransferase; structural genomics, p	6e-05
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	8e-05
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	8e-05
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	9e-05
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	1e-04
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	2e-04
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	2e-04
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	2e-04
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	2e-04
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	2e-04
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	2e-04
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	3e-04
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	3e-04
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	3e-04
3i9f_A	170	Putative type 11 methyltransferase; structural gen	3e-04
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	3e-04
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	4e-04
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	4e-04
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	4e-04
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	4e-04
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	4e-04
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	5e-04
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	6e-04
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	7e-04
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	7e-04

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215

 Score = 92.0 bits (228), Expect = 6e-23
 Identities = 38/164 (23%), Positives = 53/164 (32%), Gaps = 37/164 (22%)

Query: 89  ASMLGLQSYWDSAYADELANFREHGHAGEVWFGADVMDVVASWTKSLCISISQGHMLNHV 148
            S      YWD  Y            A   WFG                        +  
Sbjct: 1   GSGYREVEYWDQRYQ------GAADSAPYDWFGDF----------------------SSF 32

Query: 149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208
             L    +   D+      +L +G GN  L  EL   GF ++T VDYS   +   Q  A 
Sbjct: 33  RALLEPELRPEDR------ILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQ--AC 84

Query: 209 RDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAIGLHPDGPL 251
                 +++   DV         F +V++KGTLDA+      P 
Sbjct: 85  YAHVPQLRWETMDVRKLDFPSASFDVVLEKGTLDALLAGERDPW 128

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246

 Score = 59.4 bits (144), Expect = 7e-11
 Identities = 15/69 (21%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
             LD+  G G L + L  +   +   VD S++ ++ A++     G    +    D+ +  
Sbjct: 40  DYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLK-PRLACQDISNLN 97

Query: 227 LERQFQLVM 235
           + R+F L+ 
Sbjct: 98  INRKFDLIT 106

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252

 Score = 58.3 bits (141), Expect = 2e-10
 Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 2/69 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            VLD+  G G+   EL+++G+ ++ G+D  E+ + +A+  A       I+FL  DVL+  
Sbjct: 44  RVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLK-IEFLQGDVLEIA 101

Query: 227 LERQFQLVM 235
            + +F  V 
Sbjct: 102 FKNEFDAVT 110

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286

 Score = 57.3 bits (138), Expect = 6e-10
 Identities = 21/124 (16%), Positives = 44/124 (35%), Gaps = 2/124 (1%)

Query: 117 EVWFGADVMDVVASWTKSLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNG 176
           + W   + +      T              +        V +  K +S   VLD+G G G
Sbjct: 73  QAWHRVEALSDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQG 132

Query: 177 LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD 236
                LS  G+ D+T  D++E++I        ++  + I   + D+    ++  +  ++ 
Sbjct: 133 RNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLN-ISTALYDINAANIQENYDFIVS 190

Query: 237 KGTL 240
               
Sbjct: 191 TVVF 194

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250

 Score = 56.8 bits (137), Expect = 7e-10
 Identities = 17/75 (22%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD 220
            +    ++L++G+  G     L +    D+T V+ SE+AI+ AQ          I ++  
Sbjct: 39  PFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKDG----ITYIHS 93

Query: 221 DVLDTKLERQFQLVM 235
              D +L R++  ++
Sbjct: 94  RFEDAQLPRRYDNIV 108

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199

 Score = 54.8 bits (132), Expect = 2e-09
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 1/73 (1%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
            LD+G GNG     L+  G+ D+   D +  +I   + + + +    +   V D+ +   
Sbjct: 36  TLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF 94

Query: 228 ERQFQLVMDKGTL 240
           +RQ+  ++    L
Sbjct: 95  DRQYDFILSTVVL 107

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299

 Score = 55.3 bits (133), Expect = 3e-09
 Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 4/72 (5%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC---IKFLVDDVL 223
            VL++  G G L       G+ ++T ++ S   +   +                +  D+ 
Sbjct: 85  PVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMS 143

Query: 224 DTKLERQFQLVM 235
              L+++F  V+
Sbjct: 144 AFALDKRFGTVV 155

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243

 Score = 54.4 bits (131), Expect = 5e-09
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            + DIG G G     L+   + ++TGVD SE+ + +AQ  A       + F V D+ + +
Sbjct: 36  RIADIGCGTGTATLLLAD-HY-EVTGVDLSEEMLEIAQEKAMETNRH-VDFWVQDMRELE 92

Query: 227 LERQFQLVM 235
           L      + 
Sbjct: 93  LPEPVDAIT 101

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239

 Score = 53.6 bits (129), Expect = 7e-09
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 6/69 (8%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           S+LD+  G G  L+  +K+   D  G++ SED +  A+                D+ D +
Sbjct: 43  SLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRLPD-----ATLHQGDMRDFR 96

Query: 227 LERQFQLVM 235
           L R+F  V+
Sbjct: 97  LGRKFSAVV 105

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230

 Score = 52.8 bits (127), Expect = 1e-08
 Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 142 GHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201
           GH  N V     + +++  K      VLDIG  +G L   + + G   ++G++   +A  
Sbjct: 15  GHYYNAVNPNLLKHIKKEWK-----EVLDIGCSSGALGAAIKENGT-RVSGIEAFPEAAE 68

Query: 202 LAQSLANR 209
            A+   + 
Sbjct: 69  QAKEKLDH 76

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 6/69 (8%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           S+LD+  G G+ L+ L+      + G++ S D + +A+                D+ D  
Sbjct: 53  SLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNPD-----AVLHHGDMRDFS 106

Query: 227 LERQFQLVM 235
           L R+F  V 
Sbjct: 107 LGRRFSAVT 115

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298

 Score = 52.4 bits (125), Expect = 3e-08
 Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT 225
           SVLD+G G G  L +  + G  +  GVD +E +IN A+  A        + F   D    
Sbjct: 67  SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR 126

Query: 226 KLE--RQFQLVMDKGTL 240
            ++  ++F ++  + + 
Sbjct: 127 HMDLGKEFDVISSQFSF 143

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227

 Score = 51.8 bits (124), Expect = 3e-08
 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
           VLD+  G G     L   GF ++ GVD SED I  A+  A     + ++F+V D      
Sbjct: 42  VLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESN-VEFIVGDARKLSF 99

Query: 228 E 228
           E
Sbjct: 100 E 100

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           + L+IG   G   ++L+      LT +D    AI  A        +S I +   D+L   
Sbjct: 54  NGLEIGCAAGAFTEKLAPHC-KRLTVIDVMPRAIGRAC--QRTKRWSHISWAATDILQFS 110

Query: 227 LERQFQLV 234
               F L+
Sbjct: 111 TAELFDLI 118

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 2/75 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           +VLD G G  L    +  +      G++ S+  +  A++ +  + F        D+    
Sbjct: 26  TVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSRENNFKL-NISKGDIRKLP 84

Query: 227 LE-RQFQLVMDKGTL 240
            +      V   GT+
Sbjct: 85  FKDESMSFVYSYGTI 99

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235

 Score = 50.8 bits (121), Expect = 7e-08
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 2/78 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT 225
             L  G G G  +  ++      + G+D SE A+  A         +    F+ +DV   
Sbjct: 69  RALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTW 127

Query: 226 KLERQFQLVMDKGTLDAI 243
           +    F L+ D     AI
Sbjct: 128 RPTELFDLIFDYVFFCAI 145

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240

 Score = 49.9 bits (119), Expect = 2e-07
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 6/69 (8%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            VLDIG G G  L+   ++G  +  GVD +ED I           F+ +K    + L + 
Sbjct: 44  RVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFC-----EGKFNVVKSDAIEYLKSL 97

Query: 227 LERQFQLVM 235
            ++    VM
Sbjct: 98  PDKYLDGVM 106

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 3/69 (4%)

Query: 167 SVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
            +LD+G G GLL   L ++   +  T VD SE  + +A++     G   +K++  D    
Sbjct: 47  DILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFR--GNLKVKYIEADYSKY 104

Query: 226 KLERQFQLV 234
             E ++ +V
Sbjct: 105 DFEEKYDMV 113

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253

 Score = 49.5 bits (118), Expect = 2e-07
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           +VLD+G G G      ++ G   + G+D SE  +  A+          + +    + D  
Sbjct: 47  TVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPV---VCYEQKAIEDIA 103

Query: 227 LE-RQFQLV 234
           +E   + +V
Sbjct: 104 IEPDAYNVV 112

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220

 Score = 49.1 bits (117), Expect = 3e-07
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           +VL+ G G G L  +L   G   + G++ S +   +A+    ++          D L  +
Sbjct: 48  NVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLPKE----FSITEGDFLSFE 102

Query: 227 LERQFQLVM 235
           +      ++
Sbjct: 103 VPTSIDTIV 111

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219

 Score = 48.4 bits (115), Expect = 5e-07
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
            V+D+G G G LL  L K   F  +TGVD S   +  A+     D    ++     +  +
Sbjct: 32  KVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQS 91

Query: 226 KLE 228
            L 
Sbjct: 92  SLV 94

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 48.4 bits (115), Expect = 6e-07
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 167 SVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224
            ++D G G G L   L       S  TG+D  E  +  A+ L     +   +FL  D  +
Sbjct: 25  HIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYD-SEFLEGDATE 83

Query: 225 TKLERQFQLV 234
            +L  ++ + 
Sbjct: 84  IELNDKYDIA 93

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293

 Score = 47.7 bits (113), Expect = 9e-07
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            VLD+  G G+    L ++GF  +T VD S+  +  A             F    + +  
Sbjct: 60  RVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKE-PAFDKWVIEEAN 117

Query: 227 LERQFQLVMDKGTLDAI 243
                + V      DA+
Sbjct: 118 WLTLDKDVPAGDGFDAV 134

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 15/59 (25%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQGFS-DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224
            VL+ G G G     L+K     ++T +D S +++  A+    ++G   +KFL  ++  
Sbjct: 40  KVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFS 98

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 15/85 (17%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 212
           ++ +      +    +L +  G G     L+  G+ ++T VD S   +  A+ LA   G 
Sbjct: 18  NDFLVSVANQIPQGKILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV 76

Query: 213 SCIKFLVDDVLDTKL-ERQFQLVMD 236
             I  +  ++ D  +    ++ ++ 
Sbjct: 77  K-ITTVQSNLADFDIVADAWEGIVS 100

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            VL++ +G G   + LS      +T +D S + I  A     R G   ++F   D+ D  
Sbjct: 49  DVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAG----RHGLDNVEFRQQDLFDWT 103

Query: 227 LERQFQLVM 235
            +RQ+  V 
Sbjct: 104 PDRQWDAVF 112

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 15/67 (22%), Positives = 30/67 (44%), Gaps = 2/67 (2%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
           VLD+G G G LL+ L+ +G  +  GVD     ++ A++    +      +         +
Sbjct: 56  VLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAAGAGEVHL-ASYAQLAEAKVPV 113

Query: 228 ERQFQLV 234
            + + L+
Sbjct: 114 GKDYDLI 120

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 15/72 (20%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDV 222
              +LD+G G G++   L+ +     T  D +  AI LA+     +      I+ +  D+
Sbjct: 53  DDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDL 111

Query: 223 LDTKLERQFQLV 234
            +   +R++  +
Sbjct: 112 YENVKDRKYNKI 123

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217

 Score = 46.1 bits (109), Expect = 3e-06
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
            V+D+G G G LL+ L K   F  +TGVD S  ++ +AQ   +R      ++    ++  
Sbjct: 32  RVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQG 91

Query: 226 KLE 228
            L 
Sbjct: 92  ALT 94

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 15/65 (23%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            ++D   GNG   + LS+     + G+D S+ A+ +A           I + + D L  +
Sbjct: 59  PLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTAAN---ISYRLLDGLVPE 114

Query: 227 LERQF 231
              Q 
Sbjct: 115 QAAQI 119

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 17/69 (24%), Positives = 30/69 (43%), Gaps = 4/69 (5%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            ++D+G G G   +   + G S + G+D SE  +  A++     G   I +   D+    
Sbjct: 46  RIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPDTG---ITYERADLDKLH 102

Query: 227 L-ERQFQLV 234
           L +  F L 
Sbjct: 103 LPQDSFDLA 111

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267

 Score = 45.6 bits (108), Expect = 5e-06
 Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 2/80 (2%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 226
           + DIG G G     L+      +TG+D+    I++    A + G    +  +V  + D  
Sbjct: 50  IADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP 109

Query: 227 LE-RQFQLVMDKGTLDAIGL 245
               +  L+  +G +  IG 
Sbjct: 110 FRNEELDLIWSEGAIYNIGF 129

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313

 Score = 45.3 bits (106), Expect = 7e-06
 Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 7/73 (9%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-------RDGFSCIKFLV 219
           +VLD+G G G  L +  K   + L   D ++ ++   Q            +     +F+ 
Sbjct: 37  TVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFIT 96

Query: 220 DDVLDTKLERQFQ 232
            D     L  +F+
Sbjct: 97  ADSSKELLIDKFR 109

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 45.5 bits (107), Expect = 7e-06
 Identities = 16/77 (20%), Positives = 24/77 (31%), Gaps = 3/77 (3%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVL 223
            V  +  G    L  L         L G+DY  +A++ A  LA     +  I     D  
Sbjct: 121 VVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAW 180

Query: 224 DTKLERQFQLVMDKGTL 240
                  + L+   G  
Sbjct: 181 KLDTREGYDLLTSNGLN 197

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219

 Score = 44.4 bits (105), Expect = 8e-06
 Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD 221
           +++ + +DIG+G G L   L+KQ    +  +D+S+    +A         +  I+ +  D
Sbjct: 42  ITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGD 101

Query: 222 VLD 224
           V +
Sbjct: 102 VHN 104

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224
           VLD+G G+G    +LS+ G+    GVD SE  I   +          + F+  D+  
Sbjct: 57  VLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGEGPD---LSFIKGDLSS 109

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292

 Score = 44.7 bits (105), Expect = 1e-05
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 8/114 (7%)

Query: 138 SISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLL-------LQELSKQGFSDL 190
           S     M   ++      +       S   +L IG G G +       +Q        + 
Sbjct: 26  STEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINN 85

Query: 191 TGVDYSEDAINLAQSL-ANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI 243
             V+ S + I   + L A       +KF       ++ + +     +    D I
Sbjct: 86  EVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFI 139

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* Length = 276

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 165 SWSVLDIGTGNG-LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL 223
              +LD+GTG G + L   S++   ++  VD   DA++LAQ  A       I  L  D  
Sbjct: 110 PCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWF 169

Query: 224 DTKLERQFQLV 234
                +QF ++
Sbjct: 170 SALAGQQFAMI 180

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195

 Score = 43.6 bits (103), Expect = 2e-05
 Identities = 22/75 (29%), Positives = 36/75 (48%), Gaps = 7/75 (9%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            +LD G G G +   LSKQG  D+ G D     I+ A     +  F   +++V D+   +
Sbjct: 49  KILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYA-----KQDFPEARWVVGDLSVDQ 102

Query: 227 L-ERQFQLVMDKGTL 240
           + E  F L++  G +
Sbjct: 103 ISETDFDLIVSAGNV 117

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 2/79 (2%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 226
           + DIG G G     L+      +TG+D   D I +    A +   +  +K +   + +  
Sbjct: 50  IADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP 109

Query: 227 LE-RQFQLVMDKGTLDAIG 244
            +  +  L+  +G +  IG
Sbjct: 110 FQNEELDLIWSEGAIYNIG 128

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 42.9 bits (101), Expect = 3e-05
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224
             VLDIG G G      S     +  GVD +++ + +A S A   G   ++F       
Sbjct: 23  HRVLDIGAGAGHTALAFSPYV-QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAES 80

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241

 Score = 42.4 bits (99), Expect = 5e-05
 Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 1/78 (1%)

Query: 164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL 223
            +   LD G G G + + L    F ++  VD +ED +  A++    +G     +    + 
Sbjct: 79  GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQ 138

Query: 224 DTKLER-QFQLVMDKGTL 240
           D   E   + ++  +  +
Sbjct: 139 DFTPEPDSYDVIWIQWVI 156

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} Length = 259

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 6/69 (8%)

Query: 167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
           +  D+G G G   + L+ + G + +TG+D  +D +  A             F   D+   
Sbjct: 36  NGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRLPN-----TNFGKADLATW 90

Query: 226 KLERQFQLV 234
           K  ++  L+
Sbjct: 91  KPAQKADLL 99

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} Length = 259

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 14/74 (18%), Positives = 36/74 (48%), Gaps = 8/74 (10%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQ------SLANRDGFSCIKFLVDD 221
           ++D+ +GNG++   LS +  + + GV+  E   ++A+       L ++     I++ +  
Sbjct: 53  IIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQ--IEIIEYDLKK 110

Query: 222 VLDTKLERQFQLVM 235
           + D   + +  +V 
Sbjct: 111 ITDLIPKERADIVT 124

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 Length = 200

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 17/52 (32%), Positives = 22/52 (42%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC 214
           +   SV+D GTGNG+L       G   +T  D   DAI  A+       F  
Sbjct: 50  IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMV 101

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302

 Score = 42.1 bits (98), Expect = 8e-05
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 10/75 (13%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN----------RDGFSCIK 216
            VL I  GNG  L++      + L   D   DAI       N                 +
Sbjct: 51  KVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQE 110

Query: 217 FLVDDVLDTKLERQF 231
            +  D   + +   F
Sbjct: 111 TIRSDTFVSSVREVF 125

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 13/74 (17%), Positives = 21/74 (28%), Gaps = 7/74 (9%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
            +L++G G G   + +   GF D+   D S +    A     R                 
Sbjct: 46  KILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRLGRP------VRTMLFHQLD 98

Query: 227 LERQFQLVMDKGTL 240
               +  V     L
Sbjct: 99  AIDAYDAVWAHACL 112

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} Length = 230

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 12/73 (16%), Positives = 29/73 (39%), Gaps = 8/73 (10%)

Query: 167 SVLDIGTGNG----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDD 221
             L+IGTG+     L+ ++        +T  +  E+    A+    R+  +  +      
Sbjct: 58  VALEIGTGHTAMMALMAEKFFN---CKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGG 114

Query: 222 VLDTKLERQFQLV 234
           ++   +E  F ++
Sbjct: 115 IIKGVVEGTFDVI 127

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950

 Score = 41.8 bits (97), Expect = 2e-04
 Identities = 12/46 (26%), Positives = 20/46 (43%), Gaps = 2/46 (4%)

Query: 167 SVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRD 210
           +++D G G+G LL  L         + GVD S   +  A  + +  
Sbjct: 724 TLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVK 769

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* Length = 284

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 7/65 (10%)

Query: 164 SSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLV 219
              +V DIGTG+G   + + + S    + +   D S  A+ +A+  A R G S       
Sbjct: 123 GIKTVADIGTGSGAIGVSVAKFSD---AIVFATDVSSKAVEIARKNAERHGVSDRFFVRK 179

Query: 220 DDVLD 224
            + L+
Sbjct: 180 GEFLE 184

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 15/85 (17%), Positives = 33/85 (38%), Gaps = 1/85 (1%)

Query: 151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD 210
           L++       + +    VLD+G G G L   L++   +++ GV+    ++   Q     +
Sbjct: 220 LEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQKGLEAN 278

Query: 211 GFSCIKFLVDDVLDTKLERQFQLVM 235
                    D       E +F +++
Sbjct: 279 ALKAQALHSDVDEALTEEARFDIIV 303

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 12/59 (20%), Positives = 26/59 (44%), Gaps = 1/59 (1%)

Query: 166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224
             VLD+ TG G +    +      +   D +ED + +A++    +G   ++++  D   
Sbjct: 39  EEVLDVATGGGHVANAFAPFV-KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQ 96

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 19/135 (14%), Positives = 47/135 (34%), Gaps = 16/135 (11%)

Query: 110 REHGHAGEVW---FGADVMDVVASWTKSL-----CISISQGHMLNHVEDLKSEPVEENDK 161
           + +    E+W      D+ D    W          +  +   +L  ++ +    +E +  
Sbjct: 25  KTYRSTDEMWKAELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRN 84

Query: 162 YLSSW------SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI 215
           +++S         LD G G G + + L  + ++    ++  +  +  A+      G    
Sbjct: 85  FIASLPGHGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELA--GMPVG 142

Query: 216 KFLVDDVLDTKLERQ 230
           KF++  +    L   
Sbjct: 143 KFILASMETATLPPN 157

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK 226
           +LD+G+G+G +L   ++      TG+D S      A+  A   G S  + F+ +D     
Sbjct: 40  ILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV 99

Query: 227 LERQFQLVMDKGTLDAIGLHP 247
              +  +    G     G   
Sbjct: 100 ANEKCDVAACVGATWIAGGFA 120

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 16/67 (23%), Positives = 34/67 (50%), Gaps = 6/67 (8%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL 227
           +LD+G G G L +++++ G +++ G D +   I  A     R  +  + F V D  + ++
Sbjct: 61  ILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKA-----RQNYPHLHFDVADARNFRV 114

Query: 228 ERQFQLV 234
           ++    V
Sbjct: 115 DKPLDAV 121

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226

 Score = 40.0 bits (93), Expect = 3e-04
 Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF 212
            VL+ G G+G        Q        D+S + + LA++ A     
Sbjct: 51  RVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARANAPHADV 95

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} Length = 343

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 3/72 (4%)

Query: 164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV 222
           +   VLD+G G G+L    ++      LT  D S  A+  +++    +G    +    +V
Sbjct: 196 TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEG-EVFASNV 254

Query: 223 LDTKLERQFQLV 234
              +++ +F ++
Sbjct: 255 FS-EVKGRFDMI 265

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 9/38 (23%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQ 204
            ++D G GNG   + L +   + L  +D +  A+   +
Sbjct: 20  VIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVK 56

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297

 Score = 40.2 bits (94), Expect = 3e-04
 Identities = 11/62 (17%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK 226
            LD+G G G   + L ++    +  ++ +       +   N+ G +  I       L+  
Sbjct: 86  GLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP 145

Query: 227 LE 228
            E
Sbjct: 146 CE 147

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} Length = 205

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK 226
           +V D+GTG+G+L     K G   +   D S++++  A+  A  +G   I      +L   
Sbjct: 63  TVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLA-D 121

Query: 227 LERQFQLVM 235
           ++ +F L++
Sbjct: 122 VDGKFDLIV 130

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375

 Score = 40.3 bits (94), Expect = 4e-04
 Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 4/75 (5%)

Query: 165 SWSVLDIGTGNGLLLQELSK-QGFSDLTGVDYSEDAINLAQ---SLANRDGFSCIKFLVD 220
              ++D+G GNG++   L      + +  VD S  A+  ++        +     +F+++
Sbjct: 223 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMIN 282

Query: 221 DVLDTKLERQFQLVM 235
           + L      +F  V+
Sbjct: 283 NALSGVEPFRFNAVL 297

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185

 Score = 39.1 bits (91), Expect = 4e-04
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 9/95 (9%)

Query: 143 HMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINL 202
             ++   D  +E +++         V+D   GNG     L+      +   D  E A+  
Sbjct: 7   RPIHMSHDFLAEVLDDESI------VVDATMGNGNDTAFLAGLSK-KVYAFDVQEQALGK 59

Query: 203 AQSLANRDGFSCIKFLVDDV--LDTKLERQFQLVM 235
                +  G    + ++D    LD  +    +  +
Sbjct: 60  TSQRLSDLGIENTELILDGHENLDHYVREPIRAAI 94

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} Length = 292

 Score = 39.9 bits (92), Expect = 4e-04
 Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT 225
            VLD+G   G L   ++ + G S + G+D     I+ A+          ++     +   
Sbjct: 49  DVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGD 108

Query: 226 KLERQFQLVMDKGTLD 241
                 +         
Sbjct: 109 PGAEGEEGTTTVRKRS 124

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299

 Score = 39.6 bits (92), Expect = 4e-04
 Identities = 17/81 (20%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 167 SVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSL--ANRDGFSCIKFLVDDV 222
            ++D+G G G    +++++   F  + G D S   I  A+ +   + D +  + F +   
Sbjct: 39  LLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSS 98

Query: 223 LDTKLERQFQLVMDKGTLDAI 243
            D   +      +DK  +D I
Sbjct: 99  DD--FKFLGADSVDKQKIDMI 117

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} Length = 215

 Score = 39.4 bits (93), Expect = 5e-04
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 8/65 (12%)

Query: 164 SSWSVLDIGTGNG----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLV 219
           S   V+D+GTG+G     +           +T VD S DA+ +A+  A R G   + +  
Sbjct: 30  SGTRVIDVGTGSGCIAVSIALACPG---VSVTAVDLSMDALAVARRNAERFGAV-VDWAA 85

Query: 220 DDVLD 224
            D ++
Sbjct: 86  ADGIE 90

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 12/81 (14%)

Query: 149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208
             +    ++E+D+      +LDIG G+G +  EL+ +G+  +TG+D + +AI LA++ A 
Sbjct: 21  YPIIHNYLQEDDE------ILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAAR 73

Query: 209 RDGFS-----CIKFLVDDVLD 224
             G +       +F V++   
Sbjct: 74  SPGLNQKTGGKAEFKVENASS 94

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 38.9 bits (91), Expect = 7e-04
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 145 LNHVEDLKSEPVEENDKYLS---SWSVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDA 199
           L+    L+    E+  K        +VLD+GTG G  L  LSK       +  +D  E+ 
Sbjct: 15  LDDPSRLELFDPEKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEM 74

Query: 200 INLAQSLANRDGFSCIKFLVDDVLDTKLE 228
           +N A    N+ G   ++ L  +     L 
Sbjct: 75  VNYAWEKVNKLGLKNVEVLKSEENKIPLP 103

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203

 Score = 38.6 bits (90), Expect = 7e-04
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 6/57 (10%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD 224
           +LD+G+G G     L+  G   + G++ +   + LA     R     + F    + D
Sbjct: 45  ILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELA-----RQTHPSVTFHHGTITD 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	253
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.67
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.61
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.58
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.54
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.54
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.53
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.53
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.53
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.52
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.51
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.5
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.5
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.5
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.5
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.49
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.49
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.49
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.49
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.48
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.48
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.48
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.48
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.47
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.47
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.46
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.46
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.45
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.45
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.45
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.45
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.45
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.44
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.44
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.43
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.43
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.43
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.43
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.43
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.43
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.43
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.43
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.43
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.43
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.43
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.43
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.42
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.42
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.42
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.42
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.41
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.41
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.4
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.4
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.4
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.4
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.4
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.39
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.39
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.39
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.38
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.38
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.38
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.38
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.38
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.38
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.38
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.38
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.37
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.37
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.37
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.37
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.37
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.36
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.36
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.36
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.36
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	99.36
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.36
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.36
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.36
3ocj_A	305	Putative exported protein; structural genomics, PS	99.35
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.35
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.35
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.35
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.35
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.35
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.35
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.35
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.34
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.34
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.34
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.34
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.34
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.33
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.33
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.33
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.33
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.33
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.33
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.33
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.32
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.32
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.32
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.31
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.31
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.31
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.31
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.31
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.31
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.31
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.31
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.3
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.3
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	99.3
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.3
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.29
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.29
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.28
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.28
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.28
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.28
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.28
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.27
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.27
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.27
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.27
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.27
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.27
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.26
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.26
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.26
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.26
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.25
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.25
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.24
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.24
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.24
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.24
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.24
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.23
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.23
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.23
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.22
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.22
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.22
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.21
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.21
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.21
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.21
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.21
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.21
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.21
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.21
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.21
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.21
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	99.2
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.2
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.2
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.2
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.19
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.19
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.18
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.18
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.17
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.17
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.17
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	99.17
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.17
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.16
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.16
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.16
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.15
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	99.15
2qm3_A	373	Predicted methyltransferase; putative methyltransf	99.15
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	99.15
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.14
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	99.14
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.14
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	99.14
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.14
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.14
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.13
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	99.13
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	99.12
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.12
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	99.12
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.12
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.12
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.11
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	99.11
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	99.11
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.11
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	99.11
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	99.11
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.11
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	99.11
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	99.1
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	99.1
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.1
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.1
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	99.1
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.09
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.09
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.09
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.09
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	99.09
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	99.09
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	99.08
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.08
3ll7_A	410	Putative methyltransferase; methytransferase, stru	99.07
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.07
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	99.06
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.05
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	99.05
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	99.05
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.05
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.04
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	99.04
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	99.03
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	99.02
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.01
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	99.01
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.0
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.0
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.0
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.99
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.97
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.97
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.97
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.96
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.95
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.94
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.93
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.92
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.92
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.92
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.92
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.91
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.91
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.91
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.9
2o07_A	304	Spermidine synthase; structural genomics, structur	98.89
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.89
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.89
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.89
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.88
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.87
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.87
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.86
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.86
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.86
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.86
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	98.85
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.85
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.84
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.84
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.82
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.82
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.78
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.77
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.76
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.76
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.75
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.75
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.73
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.71
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.69
3lkd_A	542	Type I restriction-modification system methyltrans	98.62
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.61
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.56
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.54
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.51
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.47
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	98.42
3cvo_A	202	Methyltransferase-like protein of unknown functio;	98.36
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.35
3khk_A	544	Type I restriction-modification system methylation	98.32
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.27
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	98.24
2zig_A	297	TTHA0409, putative modification methylase; methylt	98.17
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	98.16
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.13
3ufb_A	530	Type I restriction-modification system methyltran	98.0
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.96
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.95
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	97.74
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	97.7
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	97.66
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.6
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	97.53
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.45
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.41
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	97.35
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.35
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.2
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.14
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.01
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.0
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.97
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	96.92
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	96.9
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	96.87
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.54
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.49
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	96.44
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	96.37
2oo3_A	283	Protein involved in catabolism of external DNA; st	96.3
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	96.19
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.12
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.34
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.23
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	94.27
3me5_A	482	Cytosine-specific methyltransferase; structural ge	94.12
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	94.0
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	92.91
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	92.28
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	91.95
4fn4_A	254	Short chain dehydrogenase; NADH-binding, rossmann	91.65
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	90.91
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	90.72
3o38_A	266	Short chain dehydrogenase; tuberculosis, ortholog	90.67
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	90.57
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	90.53
3ucx_A	264	Short chain dehydrogenase; ssgcid, seattle structu	89.61
3o26_A	311	Salutaridine reductase; short chain dehydrogenase/	89.39
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	89.19
3tjr_A	301	Short chain dehydrogenase; structural genomics, se	88.99
3qiv_A	253	Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR	88.86
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	88.72
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	88.71
4g81_D	255	Putative hexonate dehydrogenase; enzyme function i	88.43
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	88.41
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	88.35
3lyl_A	247	3-oxoacyl-(acyl-carrier-protein) reductase; alpha	88.21
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	88.15
3pk0_A	262	Short-chain dehydrogenase/reductase SDR; ssgcid, s	87.89
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	87.67
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	87.2
3rkr_A	262	Short chain oxidoreductase; rossmann fold; HET: NA	87.09
3sju_A	279	Keto reductase; short-chain dehydrogenase, oxidore	86.92
3gaf_A	256	7-alpha-hydroxysteroid dehydrogenase; seattle stru	86.83
3lf2_A	265	Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross	86.79
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	86.75
1xu9_A	286	Corticosteroid 11-beta-dehydrogenase, isozyme 1; h	86.28
3tfo_A	264	Putative 3-oxoacyl-(acyl-carrier-protein) reducta;	86.26
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	86.19
3nyw_A	250	Putative oxidoreductase; fatty acid synthesis,3-ox	86.11
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	85.73
3imf_A	257	Short chain dehydrogenase; structural genomics, in	85.68
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	85.66
3awd_A	260	GOX2181, putative polyol dehydrogenase; oxidoreduc	85.53
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	85.49
3sx2_A	278	Putative 3-ketoacyl-(acyl-carrier-protein) reduct;	85.33
2jah_A	247	Clavulanic acid dehydrogenase; short-chain dehydro	85.29
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	85.24
3v8b_A	283	Putative dehydrogenase, possibly 3-oxoacyl-[acyl-	85.22
3i1j_A	247	Oxidoreductase, short chain dehydrogenase/reducta;	85.11
3svt_A	281	Short-chain type dehydrogenase/reductase; ssgcid,	84.98
3rih_A	293	Short chain dehydrogenase or reductase; structural	84.95
3ioy_A	319	Short-chain dehydrogenase/reductase SDR; structura	84.95
3pxx_A	287	Carveol dehydrogenase; structural genomics, seattl	84.92
1yb1_A	272	17-beta-hydroxysteroid dehydrogenase type XI; shor	84.91
3t7c_A	299	Carveol dehydrogenase; structural genomics, seattl	84.89
3f1l_A	252	Uncharacterized oxidoreductase YCIK; E. coli, NADP	84.84
3pgx_A	280	Carveol dehydrogenase; structural genomics, seattl	84.76
3r1i_A	276	Short-chain type dehydrogenase/reductase; structur	84.73
2rhc_B	277	Actinorhodin polyketide ketoreductase; oxidoreduct	84.55
1ae1_A	273	Tropinone reductase-I; oxidoreductase, tropane alk	84.49
3uve_A	286	Carveol dehydrogenase ((+)-trans-carveol dehydrog;	84.48
3c85_A	183	Putative glutathione-regulated potassium-efflux S	84.36
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	84.36
2ae2_A	260	Protein (tropinone reductase-II); oxidoreductase,	84.31
1iy8_A	267	Levodione reductase; oxidoreductase; HET: NAD; 1.6	84.26
1zem_A	262	Xylitol dehydrogenase; rossmann fold, dinucleotide	84.16
1y1p_A	342	ARII, aldehyde reductase II; rossmann fold, short	84.12
3ftp_A	270	3-oxoacyl-[acyl-carrier protein] reductase; ssgcid	84.07
3oig_A	266	Enoyl-[acyl-carrier-protein] reductase [NADH]; fat	83.79
4dry_A	281	3-oxoacyl-[acyl-carrier-protein] reductase; struct	83.68
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	83.48
3l77_A	235	Short-chain alcohol dehydrogenase; oxidoreductase;	83.15
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	83.09
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	83.0
4egf_A	266	L-xylulose reductase; structural genomics, ssgcid,	82.94
3ai3_A	263	NADPH-sorbose reductase; rossmann-fold, NADPH-depe	82.89
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	82.88
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	82.85
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	82.82
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	82.68
4ibo_A	271	Gluconate dehydrogenase; enzyme function initiativ	82.67
3tsc_A	277	Putative oxidoreductase; structural genomics, seat	82.63
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	82.61
3cxt_A	291	Dehydrogenase with different specificities; rossma	82.46
4fc7_A	277	Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman	82.3
2uyo_A	310	Hypothetical protein ML2640; putative methyltransf	82.26
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	82.17
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	82.12
3s55_A	281	Putative short-chain dehydrogenase/reductase; stru	82.09
3tox_A	280	Short chain dehydrogenase; structural genomics, PS	82.08
4da9_A	280	Short-chain dehydrogenase/reductase; structural ge	82.08
4imr_A	275	3-oxoacyl-(acyl-carrier-protein) reductase; oxidor	82.06
1xkq_A	280	Short-chain reductase family member (5D234); parra	82.02
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	81.76
2qq5_A	260	DHRS1, dehydrogenase/reductase SDR family member 1	81.75
3l9w_A	413	Glutathione-regulated potassium-efflux system Pro	81.7
4hp8_A	247	2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi	81.69
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	81.67
1xg5_A	279	ARPG836; short chain dehydrogenase, human, SGC, st	81.59
4iin_A	271	3-ketoacyl-acyl carrier protein reductase (FABG);	81.58
1fmc_A	255	7 alpha-hydroxysteroid dehydrogenase; short-chain	81.52
2zat_A	260	Dehydrogenase/reductase SDR family member 4; alpha	81.52
4g65_A	461	TRK system potassium uptake protein TRKA; structur	81.5
1geg_A	256	Acetoin reductase; SDR family, oxidoreductase; HET	81.48
3l4b_C	218	TRKA K+ channel protien TM1088B; potassium channel	81.37
3grk_A	293	Enoyl-(acyl-carrier-protein) reductase (NADH); ssg	80.82
2b4q_A	276	Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier	80.75
3oec_A	317	Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO;	80.69
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	80.28
1vl8_A	267	Gluconate 5-dehydrogenase; TM0441, structural geno	80.23

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.67  E-value=2.2e-16  Score=136.96  Aligned_cols=80  Identities=23%  Similarity=0.267  Sum_probs=70.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh-----------------cCCCceEEEEeccCCC
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-----------------DGFSCIKFLVDDVLDT  225 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~-----------------~g~~~i~~~~~D~~~~  225 (253)
                      .++.+|||+|||+|..+..|+++|+ +|+|||+|+.||+.|+++...                 ....+++++++|+.++
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l  145 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDL  145 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTG
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECccccC
Confidence            3678999999999999999999988 999999999999999887531                 0124799999999999


Q ss_pred             cCC--CCccEEEEcccccee
Q 025428          226 KLE--RQFQLVMDKGTLDAI  243 (253)
Q Consensus       226 ~~~--~~fD~Vi~~~~l~~i  243 (253)
                      ++.  ++||+|++.++|+++
T Consensus       146 ~~~~~~~FD~V~~~~~l~~l  165 (252)
T 2gb4_A          146 PRANIGKFDRIWDRGALVAI  165 (252)
T ss_dssp             GGGCCCCEEEEEESSSTTTS
T ss_pred             CcccCCCEEEEEEhhhhhhC
Confidence            864  899999999999998

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.61  E-value=7.9e-16  Score=128.67  Aligned_cols=81  Identities=19%  Similarity=0.200  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc------------CCCceEEEEeccCCCcCC--
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD------------GFSCIKFLVDDVLDTKLE--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~------------g~~~i~~~~~D~~~~~~~--  228 (253)
                      .++.+|||+|||+|..+..|+++|+ +|+|+|+|+.||+.|+++....            ...+++++++|+.++++.  
T Consensus        21 ~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~   99 (203)
T 1pjz_A           21 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   99 (203)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence            4678999999999999999999987 9999999999999999986431            124799999999999864  


Q ss_pred             CCccEEEEccccceec
Q 025428          229 RQFQLVMDKGTLDAIG  244 (253)
Q Consensus       229 ~~fD~Vi~~~~l~~i~  244 (253)
                      ++||+|++..++|++.
T Consensus       100 ~~fD~v~~~~~l~~l~  115 (203)
T 1pjz_A          100 GHCAAFYDRAAMIALP  115 (203)
T ss_dssp             HSEEEEEEESCGGGSC
T ss_pred             CCEEEEEECcchhhCC
Confidence            7999999999999873

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.58  E-value=7.4e-15  Score=127.95  Aligned_cols=80  Identities=15%  Similarity=0.157  Sum_probs=71.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC---CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG---FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g---~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      .++.+|||||||||.++..++++.   ..+|+|+|+|+.||+.|+++++..+.. +++++++|+.++++ +.||+|+++.
T Consensus        69 ~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~~-~~~d~v~~~~  147 (261)
T 4gek_A           69 QPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENASMVVLNF  147 (261)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCCC-CSEEEEEEES
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccccccc-cccccceeee
Confidence            578899999999999999999861   228999999999999999999887765 69999999999876 4699999999


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      +||++
T Consensus       148 ~l~~~  152 (261)
T 4gek_A          148 TLQFL  152 (261)
T ss_dssp             CGGGS
T ss_pred             eeeec
Confidence            99997

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.54  E-value=2.9e-14  Score=122.00  Aligned_cols=89  Identities=19%  Similarity=0.245  Sum_probs=78.0

Q ss_pred             HHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCC-CCcc
Q 025428          155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQ  232 (253)
Q Consensus       155 l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~-~~fD  232 (253)
                      ++..+....++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.+++++...++.+ ++++++|+.+++++ ++||
T Consensus        37 ~l~~l~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD  116 (257)
T 3f4k_A           37 AVSFINELTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPFQNEELD  116 (257)
T ss_dssp             HHTTSCCCCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSSCTTCEE
T ss_pred             HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCCCCCCEE
Confidence            334444445678999999999999999999954599999999999999999999988875 99999999998875 8999


Q ss_pred             EEEEcccccee
Q 025428          233 LVMDKGTLDAI  243 (253)
Q Consensus       233 ~Vi~~~~l~~i  243 (253)
                      +|++..++||+
T Consensus       117 ~v~~~~~l~~~  127 (257)
T 3f4k_A          117 LIWSEGAIYNI  127 (257)
T ss_dssp             EEEEESCSCCC
T ss_pred             EEEecChHhhc
Confidence            99999999997

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.54  E-value=4.4e-14  Score=121.46  Aligned_cols=80  Identities=18%  Similarity=0.328  Sum_probs=73.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++...++.++.++++|+.+++++ ++||+|+++.++|
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~~~l~  114 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAAH  114 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCCCCCCCEEEEEEhhhhH
Confidence            4678999999999999999999965 9999999999999999999888888899999999998876 8999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       115 ~~  116 (260)
T 1vl5_A          115 HF  116 (260)
T ss_dssp             GC
T ss_pred             hc
Confidence            97

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.53  E-value=1.8e-14  Score=118.36  Aligned_cols=94  Identities=16%  Similarity=0.132  Sum_probs=78.5

Q ss_pred             cccchHHHHhccC--CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-
Q 025428          150 DLKSEPVEENDKY--LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-  226 (253)
Q Consensus       150 ~~~~~l~~~l~~~--~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-  226 (253)
                      .+...+...+...  .++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++++.+++.+++++++|+.++. 
T Consensus        28 ~~~~~l~~~l~~~~~~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~  107 (189)
T 3p9n_A           28 RVRESLFNIVTARRDLTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVA  107 (189)
T ss_dssp             HHHHHHHHHHHHHSCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHHhccCCCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHh
Confidence            3344455555442  4778999999999999998888877789999999999999999999998878999999998864 


Q ss_pred             -C-CCCccEEEEcccccee
Q 025428          227 -L-ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       227 -~-~~~fD~Vi~~~~l~~i  243 (253)
                       + .++||+|+++..+++.
T Consensus       108 ~~~~~~fD~i~~~~p~~~~  126 (189)
T 3p9n_A          108 AGTTSPVDLVLADPPYNVD  126 (189)
T ss_dssp             HCCSSCCSEEEECCCTTSC
T ss_pred             hccCCCccEEEECCCCCcc
Confidence             2 4899999999887763

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.53  E-value=4.2e-14  Score=122.20  Aligned_cols=88  Identities=20%  Similarity=0.308  Sum_probs=77.3

Q ss_pred             HHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccE
Q 025428          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQL  233 (253)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~  233 (253)
                      +..+....++.+|||||||+|.++..+++.+..+|+|+|+|+.+++.|+++++..++. +++++++|+.+++++ ++||+
T Consensus        38 l~~l~~~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  117 (267)
T 3kkz_A           38 LSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPFRNEELDL  117 (267)
T ss_dssp             HTTCCCCCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEE
T ss_pred             HHhcccCCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCCCCCCEEE
Confidence            3333334577899999999999999999996669999999999999999999998886 599999999998865 89999


Q ss_pred             EEEcccccee
Q 025428          234 VMDKGTLDAI  243 (253)
Q Consensus       234 Vi~~~~l~~i  243 (253)
                      |++..+++++
T Consensus       118 i~~~~~~~~~  127 (267)
T 3kkz_A          118 IWSEGAIYNI  127 (267)
T ss_dssp             EEESSCGGGT
T ss_pred             EEEcCCceec
Confidence            9999999987

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.53  E-value=4.2e-14  Score=117.21  Aligned_cols=81  Identities=31%  Similarity=0.423  Sum_probs=71.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++.|..+++|+|+|+.+++.++++...  ..+++++++|+.+++++ ++||+|+++++++
T Consensus        41 ~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~~~~~fD~v~~~~~~~  118 (215)
T 2pxx_A           41 RPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDFPSASFDVVLEKGTLD  118 (215)
T ss_dssp             CTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCSCSSCEEEEEEESHHH
T ss_pred             CCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCCCCCcccEEEECcchh
Confidence            46679999999999999999999766999999999999999998764  34799999999998765 7899999999999


Q ss_pred             eecc
Q 025428          242 AIGL  245 (253)
Q Consensus       242 ~i~~  245 (253)
                      ++.+
T Consensus       119 ~~~~  122 (215)
T 2pxx_A          119 ALLA  122 (215)
T ss_dssp             HHTT
T ss_pred             hhcc
Confidence            8753

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.52  E-value=6.8e-14  Score=114.72  Aligned_cols=80  Identities=20%  Similarity=0.336  Sum_probs=73.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.+++++...++.+++++++|+.+++++++||+|++..++||
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~v~~~~~l~~  109 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTFDRQYDFILSTVVLMF  109 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCCCCCEEEEEEESCGGG
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCCCCCceEEEEcchhhh
Confidence            3567999999999999999999966 999999999999999999988888789999999998877789999999999998


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus       110 ~  110 (199)
T 2xvm_A          110 L  110 (199)
T ss_dssp             S
T ss_pred             C
Confidence            7

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.51  E-value=3e-14  Score=120.77  Aligned_cols=79  Identities=23%  Similarity=0.239  Sum_probs=70.5

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      +..+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...+. .+++++++|+.+++..++||+|++..++++
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~l~~  144 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRPTELFDLIFDYVFFCA  144 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCCSSCEEEEEEESSTTT
T ss_pred             CCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCCCCCeeEEEEChhhhc
Confidence            446999999999999999998765 899999999999999999876443 369999999999877789999999999999


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus       145 ~  145 (235)
T 3lcc_A          145 I  145 (235)
T ss_dssp             S
T ss_pred             C
Confidence            8

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.50  E-value=9.8e-14  Score=121.03  Aligned_cols=88  Identities=20%  Similarity=0.365  Sum_probs=78.6

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCcc
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ  232 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD  232 (253)
                      ..+++.+.. .++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.+++++..+++ +++++++|+.+.+++++||
T Consensus       110 ~~~~~~~~~-~~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD  186 (286)
T 3m70_A          110 GDVVDAAKI-ISPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANIQENYD  186 (286)
T ss_dssp             HHHHHHHHH-SCSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCCCSCEE
T ss_pred             HHHHHHhhc-cCCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccccCCcc
Confidence            344555544 3778999999999999999999977 999999999999999999999888 9999999999987788999


Q ss_pred             EEEEcccccee
Q 025428          233 LVMDKGTLDAI  243 (253)
Q Consensus       233 ~Vi~~~~l~~i  243 (253)
                      +|+++.++||+
T Consensus       187 ~i~~~~~~~~~  197 (286)
T 3m70_A          187 FIVSTVVFMFL  197 (286)
T ss_dssp             EEEECSSGGGS
T ss_pred             EEEEccchhhC
Confidence            99999999987

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.50  E-value=1.6e-14  Score=125.59  Aligned_cols=74  Identities=20%  Similarity=0.187  Sum_probs=66.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      ....+|||||||||.++..|++++. +|+|+|+|+.|++.|+++      .+++++++|+.+++++ ++||+|++..++|
T Consensus        38 ~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~~------~~v~~~~~~~e~~~~~~~sfD~v~~~~~~h  110 (257)
T 4hg2_A           38 PARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALRH------PRVTYAVAPAEDTGLPPASVDVAIAAQAMH  110 (257)
T ss_dssp             SCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCCC------TTEEEEECCTTCCCCCSSCEEEEEECSCCT
T ss_pred             CCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhhc------CCceeehhhhhhhcccCCcccEEEEeeehh
Confidence            3457999999999999999999965 999999999999887642      4899999999999886 8999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ++
T Consensus       111 ~~  112 (257)
T 4hg2_A          111 WF  112 (257)
T ss_dssp             TC
T ss_pred             Hh
Confidence            87

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.50  E-value=5.2e-14  Score=117.48  Aligned_cols=79  Identities=23%  Similarity=0.232  Sum_probs=71.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++...+  +++++++|+.+++.+++||+|++..++||
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  126 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFSTAELFDLIVVAEVLYY  126 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCCCSCCEEEEEEESCGGG
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCCCCCCccEEEEccHHHh
Confidence            4667999999999999999999965 99999999999999999986643  89999999999886689999999999999


Q ss_pred             ec
Q 025428          243 IG  244 (253)
Q Consensus       243 i~  244 (253)
                      +.
T Consensus       127 ~~  128 (216)
T 3ofk_A          127 LE  128 (216)
T ss_dssp             SS
T ss_pred             CC
Confidence            73

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.50  E-value=1.5e-13  Score=117.51  Aligned_cols=81  Identities=21%  Similarity=0.222  Sum_probs=73.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.|++.|+++++..++. +++++++|+.+++++++||+|++..++|
T Consensus        35 ~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~V~~~~~~~  114 (256)
T 1nkv_A           35 KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGATW  114 (256)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCcCCCCCEEEECCChH
Confidence            577899999999999999999873338999999999999999999988885 7999999999987778999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       115 ~~  116 (256)
T 1nkv_A          115 IA  116 (256)
T ss_dssp             GT
T ss_pred             hc
Confidence            87

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.49  E-value=6.4e-14  Score=118.41  Aligned_cols=84  Identities=24%  Similarity=0.326  Sum_probs=72.1

Q ss_pred             HHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEE
Q 025428          155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLV  234 (253)
Q Consensus       155 l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~V  234 (253)
                      +.+.+....++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|+++...    +++++++|+.++..+++||+|
T Consensus        33 ~~~~l~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~~~~~~fD~v  107 (250)
T 2p7i_A           33 MVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD----GITYIHSRFEDAQLPRRYDNI  107 (250)
T ss_dssp             HHHHHGGGCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGCCCSSCEEEE
T ss_pred             HHHHHHhhcCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHcCcCCcccEE
Confidence            344444445677999999999999999999866 899999999999999998643    789999999988556899999


Q ss_pred             EEcccccee
Q 025428          235 MDKGTLDAI  243 (253)
Q Consensus       235 i~~~~l~~i  243 (253)
                      ++..+|||+
T Consensus       108 ~~~~~l~~~  116 (250)
T 2p7i_A          108 VLTHVLEHI  116 (250)
T ss_dssp             EEESCGGGC
T ss_pred             EEhhHHHhh
Confidence            999999998

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.49  E-value=1.4e-13  Score=117.25  Aligned_cols=80  Identities=21%  Similarity=0.333  Sum_probs=74.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++++...++.+++++++|+.+++++ ++||+|++..++|
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~l~   98 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYAAH   98 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCCCCCCcEEEEEECCchh
Confidence            5788999999999999999999965 9999999999999999999888888899999999998876 8999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus        99 ~~  100 (239)
T 1xxl_A           99 HF  100 (239)
T ss_dssp             GC
T ss_pred             hc
Confidence            87

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.49  E-value=3.7e-14  Score=120.61  Aligned_cols=89  Identities=18%  Similarity=0.115  Sum_probs=77.4

Q ss_pred             HHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCCCCccE
Q 025428          155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQL  233 (253)
Q Consensus       155 l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~~~fD~  233 (253)
                      +...+....++.+|||+|||+|.++..+++.| .+|+|+|+|+.|++.|+++++..++ .+++++++|+.+++.+++||+
T Consensus        69 l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~D~  147 (241)
T 3gdh_A           69 IAGRVSQSFKCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLASFLKADV  147 (241)
T ss_dssp             HHHHHHHHSCCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGGGCCCSE
T ss_pred             HHHHhhhccCCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcccCCCCE
Confidence            33444333477899999999999999999997 5999999999999999999999998 489999999998876689999


Q ss_pred             EEEccccceec
Q 025428          234 VMDKGTLDAIG  244 (253)
Q Consensus       234 Vi~~~~l~~i~  244 (253)
                      |+++.+++++.
T Consensus       148 v~~~~~~~~~~  158 (241)
T 3gdh_A          148 VFLSPPWGGPD  158 (241)
T ss_dssp             EEECCCCSSGG
T ss_pred             EEECCCcCCcc
Confidence            99999998864

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.49  E-value=1.2e-13  Score=122.34  Aligned_cols=81  Identities=16%  Similarity=0.195  Sum_probs=74.6

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      ..++.+|||+|||+|.++..+++. +. +|+|+|+|+.|++.|++++...++. +++++++|+.+++++ ++||+|++..
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  193 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPFDKGAVTASWNNE  193 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCCCTTCEEEEEEES
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCCCCCCEeEEEECC
Confidence            456789999999999999999998 65 8999999999999999999999886 699999999998875 8999999999


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      +++|+
T Consensus       194 ~l~~~  198 (312)
T 3vc1_A          194 STMYV  198 (312)
T ss_dssp             CGGGS
T ss_pred             chhhC
Confidence            99987

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.48  E-value=1.7e-13  Score=114.73  Aligned_cols=81  Identities=22%  Similarity=0.369  Sum_probs=72.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCC-----ceEEEEeccCCCcCC-CCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVDDVLDTKLE-RQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~-----~i~~~~~D~~~~~~~-~~fD~Vi  235 (253)
                      .++.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.|++++...++.     +++++++|+...+.. ++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~  107 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDKRFHGYDAAT  107 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCGGGCSCSEEE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccccCCCcCEEe
Confidence            4678999999999999999999843 59999999999999999999877765     799999999776654 7999999


Q ss_pred             Ecccccee
Q 025428          236 DKGTLDAI  243 (253)
Q Consensus       236 ~~~~l~~i  243 (253)
                      +..+++|+
T Consensus       108 ~~~~l~~~  115 (217)
T 3jwh_A          108 VIEVIEHL  115 (217)
T ss_dssp             EESCGGGC
T ss_pred             eHHHHHcC
Confidence            99999998

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.48  E-value=1.4e-13  Score=114.40  Aligned_cols=85  Identities=24%  Similarity=0.274  Sum_probs=73.4

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccE
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQL  233 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~  233 (253)
                      .+.+.+....++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++    .+..+++++++|+.++..+++||+
T Consensus        36 ~~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~~~~~~D~  110 (218)
T 3ou2_A           36 AALERLRAGNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWTPDRQWDA  110 (218)
T ss_dssp             HHHHHHTTTTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCCCSSCEEE
T ss_pred             HHHHHHhcCCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCCCCCceeE
Confidence            4455555556778999999999999999999966 99999999999999998    455689999999999844589999


Q ss_pred             EEEcccccee
Q 025428          234 VMDKGTLDAI  243 (253)
Q Consensus       234 Vi~~~~l~~i  243 (253)
                      |++..++||+
T Consensus       111 v~~~~~l~~~  120 (218)
T 3ou2_A          111 VFFAHWLAHV  120 (218)
T ss_dssp             EEEESCGGGS
T ss_pred             EEEechhhcC
Confidence            9999999997

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.48  E-value=1.7e-13  Score=114.66  Aligned_cols=81  Identities=21%  Similarity=0.312  Sum_probs=72.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCC-----ceEEEEeccCCCcCC-CCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVDDVLDTKLE-RQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~-----~i~~~~~D~~~~~~~-~~fD~Vi  235 (253)
                      .++.+|||||||+|.++..+++.+. .+++|+|+|+.|++.|++++...++.     +++++++|+...+.. ++||+|+
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~V~  107 (219)
T 3jwg_A           28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDKRFSGYDAAT  107 (219)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCGGGTTCSEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccccccCCCCEEE
Confidence            4678999999999999999999853 59999999999999999998877664     799999999877654 8999999


Q ss_pred             Ecccccee
Q 025428          236 DKGTLDAI  243 (253)
Q Consensus       236 ~~~~l~~i  243 (253)
                      +..+++|+
T Consensus       108 ~~~~l~~~  115 (219)
T 3jwg_A          108 VIEVIEHL  115 (219)
T ss_dssp             EESCGGGC
T ss_pred             EHHHHHhC
Confidence            99999998

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.48  E-value=1.4e-13  Score=116.24  Aligned_cols=85  Identities=21%  Similarity=0.297  Sum_probs=73.8

Q ss_pred             HHhccCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEE
Q 025428          157 EENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM  235 (253)
Q Consensus       157 ~~l~~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi  235 (253)
                      ..+....++.+|||+|||+|.++..+++.. ..+++|+|+|+.|++.|++++...+  +++++++|+.+++++++||+|+
T Consensus        37 ~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~~~~fD~v~  114 (234)
T 3dtn_A           37 SIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDFEEKYDMVV  114 (234)
T ss_dssp             HTCCCSCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCCCSCEEEEE
T ss_pred             HHhhcCCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCCCCCceEEE
Confidence            333333567899999999999999999983 3499999999999999999986654  8999999999988779999999


Q ss_pred             Ecccccee
Q 025428          236 DKGTLDAI  243 (253)
Q Consensus       236 ~~~~l~~i  243 (253)
                      +..++||+
T Consensus       115 ~~~~l~~~  122 (234)
T 3dtn_A          115 SALSIHHL  122 (234)
T ss_dssp             EESCGGGS
T ss_pred             EeCccccC
Confidence            99999998

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.47  E-value=4.4e-14  Score=135.61  Aligned_cols=81  Identities=25%  Similarity=0.453  Sum_probs=73.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--C-CCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~-~~~fD~Vi~~~~  239 (253)
                      .++.+|||||||+|.++..||++|+ +|+|||+|+.+|+.|+..+...|..+++|++++++++.  . +++||+|+|..+
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~e~  143 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLAIGLSV  143 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEEEEESC
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEEEECcc
Confidence            3567999999999999999999988 89999999999999999998887558999999998873  3 478999999999


Q ss_pred             cceec
Q 025428          240 LDAIG  244 (253)
Q Consensus       240 l~~i~  244 (253)
                      |||+.
T Consensus       144 ~ehv~  148 (569)
T 4azs_A          144 FHHIV  148 (569)
T ss_dssp             HHHHH
T ss_pred             hhcCC
Confidence            99984

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.47  E-value=2.1e-13  Score=111.24  Aligned_cols=74  Identities=15%  Similarity=0.126  Sum_probs=66.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CCCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~~~fD~Vi~~  237 (253)
                      .++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|+++++.+++.+++++++++..+.  .+++||+|+++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD~v~~~   96 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIRAAIFN   96 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcCEEEEe
Confidence            46789999999999999999999 4499999999999999999999988888999998887753  35789999986

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.46  E-value=3.7e-13  Score=111.67  Aligned_cols=91  Identities=20%  Similarity=0.341  Sum_probs=77.0

Q ss_pred             cchHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCC
Q 025428          152 KSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQ  230 (253)
Q Consensus       152 ~~~l~~~l~~-~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~  230 (253)
                      ...+.+.+.. ..++.+|||+|||+|.++..+++.+..+|+|+|+|+.|++.|++++..+++.+++++++|+.+. .+++
T Consensus        47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~-~~~~  125 (205)
T 3grz_A           47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLAD-VDGK  125 (205)
T ss_dssp             HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTT-CCSC
T ss_pred             HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEecccccc-CCCC
Confidence            3444555543 2567899999999999999999987779999999999999999999998887799999999875 3589


Q ss_pred             ccEEEEcccccee
Q 025428          231 FQLVMDKGTLDAI  243 (253)
Q Consensus       231 fD~Vi~~~~l~~i  243 (253)
                      ||+|+++.+++++
T Consensus       126 fD~i~~~~~~~~~  138 (205)
T 3grz_A          126 FDLIVANILAEIL  138 (205)
T ss_dssp             EEEEEEESCHHHH
T ss_pred             ceEEEECCcHHHH
Confidence            9999999888764

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.46  E-value=2.4e-13  Score=118.53  Aligned_cols=79  Identities=23%  Similarity=0.360  Sum_probs=71.8

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCc-C-CCCccEEEEcccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-L-ERQFQLVMDKGTL  240 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~-~-~~~fD~Vi~~~~l  240 (253)
                      ++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|++++...++ .+++++++|+.+++ + +++||+|++..++
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~l  146 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPVDLILFHAVL  146 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESCG
T ss_pred             CCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCceEEEECchh
Confidence            467999999999999999999966 999999999999999999998888 47999999999987 3 4899999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +|+
T Consensus       147 ~~~  149 (285)
T 4htf_A          147 EWV  149 (285)
T ss_dssp             GGC
T ss_pred             hcc
Confidence            997

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.45  E-value=4.2e-13  Score=111.58  Aligned_cols=81  Identities=16%  Similarity=0.105  Sum_probs=73.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.|++++...++.+++++++|+.+.... ++||+|++..+++
T Consensus        76 ~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~~  154 (210)
T 3lbf_A           76 TPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGWQARAPFDAIIVTAAPP  154 (210)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEESSBCS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCCccCCCccEEEEccchh
Confidence            577899999999999999999995 49999999999999999999998888899999999886554 7999999999998


Q ss_pred             eec
Q 025428          242 AIG  244 (253)
Q Consensus       242 ~i~  244 (253)
                      ++.
T Consensus       155 ~~~  157 (210)
T 3lbf_A          155 EIP  157 (210)
T ss_dssp             SCC
T ss_pred             hhh
Confidence            863

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.45  E-value=2.4e-13  Score=113.49  Aligned_cols=81  Identities=25%  Similarity=0.347  Sum_probs=74.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||+|.++..+++.+  ..+|+|+|+|+.|++.+++++...++.+++++++|+.+++++ ++||+|++..+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  115 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDFIFMAFT  115 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSSCSSCEEEEEEESC
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCCCCCCeeEEEeehh
Confidence            567899999999999999999984  249999999999999999999988888899999999998765 78999999999


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      ++++
T Consensus       116 l~~~  119 (219)
T 3dh0_A          116 FHEL  119 (219)
T ss_dssp             GGGC
T ss_pred             hhhc
Confidence            9987

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.45  E-value=4.4e-13  Score=117.35  Aligned_cols=82  Identities=15%  Similarity=0.226  Sum_probs=74.5

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDK  237 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~  237 (253)
                      ...++.+|||||||+|.++..+++. |. +|+|+|+|+.|++.|++++...++. +++++++|+.+++++ ++||+|++.
T Consensus        79 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  157 (297)
T 2o57_A           79 VLQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQ  157 (297)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEE
T ss_pred             CCCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCCCCCCEeEEEec
Confidence            4457789999999999999999987 66 9999999999999999999888875 699999999998875 899999999


Q ss_pred             ccccee
Q 025428          238 GTLDAI  243 (253)
Q Consensus       238 ~~l~~i  243 (253)
                      .+++|+
T Consensus       158 ~~l~~~  163 (297)
T 2o57_A          158 DAFLHS  163 (297)
T ss_dssp             SCGGGC
T ss_pred             chhhhc
Confidence            999997

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.45  E-value=1.3e-13  Score=117.31  Aligned_cols=80  Identities=19%  Similarity=0.284  Sum_probs=71.7

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~  242 (253)
                      ++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.|++++...+..+++++++|+.+++++ ++||+|++..+++|
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  158 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIGH  158 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGGG
T ss_pred             CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCCCCCCEEEEEEcchhhh
Confidence            57899999999999999999886669999999999999999998776545799999999988765 68999999999998


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus       159 ~  159 (241)
T 2ex4_A          159 L  159 (241)
T ss_dssp             S
T ss_pred             C
Confidence            7

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.45  E-value=8.4e-14  Score=116.12  Aligned_cols=90  Identities=16%  Similarity=0.076  Sum_probs=73.7

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC--CceEEEEeccCCCcC--
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLVDDVLDTKL--  227 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~--~~i~~~~~D~~~~~~--  227 (253)
                      ...+.+.+....++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++++.+++  .+++++++|+.++..  
T Consensus        41 ~~~l~~~l~~~~~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~  120 (201)
T 2ift_A           41 KETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP  120 (201)
T ss_dssp             HHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC
T ss_pred             HHHHHHHHHHhcCCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh
Confidence            3344444443236789999999999999998888777999999999999999999999998  689999999987532  


Q ss_pred             -CCC-ccEEEEccccc
Q 025428          228 -ERQ-FQLVMDKGTLD  241 (253)
Q Consensus       228 -~~~-fD~Vi~~~~l~  241 (253)
                       +++ ||+|+++..++
T Consensus       121 ~~~~~fD~I~~~~~~~  136 (201)
T 2ift_A          121 QNQPHFDVVFLDPPFH  136 (201)
T ss_dssp             CSSCCEEEEEECCCSS
T ss_pred             ccCCCCCEEEECCCCC
Confidence             368 99999987754

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.44  E-value=3.1e-13  Score=118.20  Aligned_cols=82  Identities=23%  Similarity=0.270  Sum_probs=73.6

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      ...++.+|||||||+|.++..+++. + ..+|+|+|+|+.+++.|++++...+. +++++++|+.+++++++||+|++..
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~v~~~~   97 (284)
T 3gu3_A           19 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELNDKYDIAICHA   97 (284)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCSSCEEEEEEES
T ss_pred             ccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcCcCCCeeEEEECC
Confidence            3457789999999999999999987 2 24999999999999999999887765 8999999999988888999999999


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      +++++
T Consensus        98 ~l~~~  102 (284)
T 3gu3_A           98 FLLHM  102 (284)
T ss_dssp             CGGGC
T ss_pred             hhhcC
Confidence            99987

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.44  E-value=1e-13  Score=115.68  Aligned_cols=90  Identities=9%  Similarity=-0.018  Sum_probs=73.7

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC-cC-CC
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KL-ER  229 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~-~~-~~  229 (253)
                      ...+++.+....++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|+++++.+++.+++++++|+.+. +. .+
T Consensus        42 ~~~l~~~l~~~~~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~  121 (202)
T 2fpo_A           42 RETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGT  121 (202)
T ss_dssp             HHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCC
T ss_pred             HHHHHHHHHhhcCCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCC
Confidence            33444444332367899999999999999988887679999999999999999999999887899999999874 33 37


Q ss_pred             CccEEEEccccc
Q 025428          230 QFQLVMDKGTLD  241 (253)
Q Consensus       230 ~fD~Vi~~~~l~  241 (253)
                      +||+|+++..++
T Consensus       122 ~fD~V~~~~p~~  133 (202)
T 2fpo_A          122 PHNIVFVDPPFR  133 (202)
T ss_dssp             CEEEEEECCSSS
T ss_pred             CCCEEEECCCCC
Confidence            899999987744

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.43  E-value=4.9e-13  Score=114.37  Aligned_cols=80  Identities=13%  Similarity=0.134  Sum_probs=71.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++++ ..+..+++++++|+.+++++ ++||+|++..++|
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  115 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGY-RYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPLPDESVHGVIVVHLWH  115 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTC-EEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCCCCCCeeEEEECCchh
Confidence            5678999999999999999999865 9999999999999999998 44445899999999998865 7899999999999


Q ss_pred             eec
Q 025428          242 AIG  244 (253)
Q Consensus       242 ~i~  244 (253)
                      |+.
T Consensus       116 ~~~  118 (263)
T 2yqz_A          116 LVP  118 (263)
T ss_dssp             GCT
T ss_pred             hcC
Confidence            973

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.43  E-value=4.1e-13  Score=113.44  Aligned_cols=78  Identities=21%  Similarity=0.266  Sum_probs=72.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcc-ccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG-TLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~-~l~~  242 (253)
                      ++.+|||+|||+|.++..+++.+. +++|+|+|+.|++.++++....+. +++++++|+.+++++++||+|++.. +|||
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v~~~~~~l~~  114 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTNY  114 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCCEEEEEECTTGGGG
T ss_pred             CCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCccCCceEEEEcCccccc
Confidence            668999999999999999999965 899999999999999999988776 8999999999987778999999998 9999


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus       115 ~  115 (246)
T 1y8c_A          115 I  115 (246)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.43  E-value=3.9e-13  Score=111.47  Aligned_cols=78  Identities=23%  Similarity=0.342  Sum_probs=71.2

Q ss_pred             CEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcccccee
Q 025428          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTLDAI  243 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~i  243 (253)
                      .+|||+|||+|.++..+++....+++|+|+|+.+++.|++++...++. +++++++|+.+++++ ++||+|++..++||+
T Consensus        45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~~~l~~~  124 (219)
T 3dlc_A           45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPIEDNYADLIVSRGSVFFW  124 (219)
T ss_dssp             EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSSCTTCEEEEEEESCGGGC
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCCCcccccEEEECchHhhc
Confidence            399999999999999999983349999999999999999999988875 799999999998876 899999999999997

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.43  E-value=2.2e-13  Score=110.73  Aligned_cols=91  Identities=16%  Similarity=0.124  Sum_probs=75.1

Q ss_pred             ccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC--
Q 025428          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL--  227 (253)
Q Consensus       151 ~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~--  227 (253)
                      +...+...+....++.+|||+|||+|.++..+++.+..+|+|+|+|+.|++.|++++..+++. +++++++|+.+...  
T Consensus        31 ~~~~~~~~l~~~~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~  110 (187)
T 2fhp_A           31 VKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQF  110 (187)
T ss_dssp             HHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHH
Confidence            344445555444577899999999999999999887679999999999999999999988874 79999999987432  


Q ss_pred             ---CCCccEEEEccccc
Q 025428          228 ---ERQFQLVMDKGTLD  241 (253)
Q Consensus       228 ---~~~fD~Vi~~~~l~  241 (253)
                         .++||+|+++.+++
T Consensus       111 ~~~~~~fD~i~~~~~~~  127 (187)
T 2fhp_A          111 YEEKLQFDLVLLDPPYA  127 (187)
T ss_dssp             HHTTCCEEEEEECCCGG
T ss_pred             HhcCCCCCEEEECCCCC
Confidence               57899999987755

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.43  E-value=2.9e-13  Score=109.58  Aligned_cols=92  Identities=20%  Similarity=0.185  Sum_probs=75.9

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCC-c-
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT-K-  226 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~-~-  226 (253)
                      .+...+.+.+....++.+|||+|||+|.++..+++.+..+|+|+|+|+.|++.|+++++..++. +++++++|+.+. + 
T Consensus        17 ~~~~~~~~~l~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~   96 (177)
T 2esr_A           17 KVRGAIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDC   96 (177)
T ss_dssp             -CHHHHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHh
Confidence            3444555555544577899999999999999999987679999999999999999999988885 699999999874 2 


Q ss_pred             CCCCccEEEEccccc
Q 025428          227 LERQFQLVMDKGTLD  241 (253)
Q Consensus       227 ~~~~fD~Vi~~~~l~  241 (253)
                      .+++||+|+++..++
T Consensus        97 ~~~~fD~i~~~~~~~  111 (177)
T 2esr_A           97 LTGRFDLVFLDPPYA  111 (177)
T ss_dssp             BCSCEEEEEECCSSH
T ss_pred             hcCCCCEEEECCCCC
Confidence            347799999987654

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.43  E-value=7.2e-13  Score=114.39  Aligned_cols=81  Identities=27%  Similarity=0.356  Sum_probs=73.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++....+|+|+|+|+.+++.+++++...++. +++++++|+.+++++ ++||+|++..++
T Consensus        60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  139 (273)
T 3bus_A           60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPFEDASFDAVWALESL  139 (273)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCSCTTCEEEEEEESCT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCCCCCCccEEEEechh
Confidence            467899999999999999999863349999999999999999999888876 699999999998876 799999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +|+
T Consensus       140 ~~~  142 (273)
T 3bus_A          140 HHM  142 (273)
T ss_dssp             TTS
T ss_pred             hhC
Confidence            997

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.43  E-value=5.2e-13  Score=115.57  Aligned_cols=81  Identities=22%  Similarity=0.372  Sum_probs=74.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++.+ ..+|+|+|+|+.+++.+++++...++.+++++++|+.+++++ ++||+|++..++
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  115 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPFEDSSFDHIFVCFVL  115 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCSCTTCEEEEEEESCG
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCCCCCCeeEEEEechh
Confidence            467899999999999999999983 349999999999999999999998888999999999998865 899999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +|+
T Consensus       116 ~~~  118 (276)
T 3mgg_A          116 EHL  118 (276)
T ss_dssp             GGC
T ss_pred             hhc
Confidence            987

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.43  E-value=3.8e-13  Score=111.96  Aligned_cols=83  Identities=14%  Similarity=0.111  Sum_probs=71.6

Q ss_pred             HHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEE
Q 025428          155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLV  234 (253)
Q Consensus       155 l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~V  234 (253)
                      +..++....++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.+++++      ++.++++|+.+++..++||+|
T Consensus        34 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~fD~v  106 (211)
T 3e23_A           34 LTKFLGELPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL------GRPVRTMLFHQLDAIDAYDAV  106 (211)
T ss_dssp             HHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH------TSCCEECCGGGCCCCSCEEEE
T ss_pred             HHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc------CCceEEeeeccCCCCCcEEEE
Confidence            334444445678999999999999999999966 9999999999999999986      567889999998866999999


Q ss_pred             EEccccceec
Q 025428          235 MDKGTLDAIG  244 (253)
Q Consensus       235 i~~~~l~~i~  244 (253)
                      ++..+++|+.
T Consensus       107 ~~~~~l~~~~  116 (211)
T 3e23_A          107 WAHACLLHVP  116 (211)
T ss_dssp             EECSCGGGSC
T ss_pred             EecCchhhcC
Confidence            9999999973

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.43  E-value=4.6e-13  Score=116.63  Aligned_cols=82  Identities=24%  Similarity=0.290  Sum_probs=73.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC--CCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL--ERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~--~~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||+|.++..+++.+..+++|+|+|+.|++.|++++...++. +++++++|+.+.++  +++||+|++..+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  142 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  142 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccCCCCCcCEEEECch
Confidence            467899999999999999999887669999999999999999999887763 69999999998876  478999999999


Q ss_pred             cceec
Q 025428          240 LDAIG  244 (253)
Q Consensus       240 l~~i~  244 (253)
                      +|++.
T Consensus       143 l~~~~  147 (298)
T 1ri5_A          143 FHYAF  147 (298)
T ss_dssp             GGGGG
T ss_pred             hhhhc
Confidence            98853

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.43  E-value=5.1e-13  Score=110.58  Aligned_cols=83  Identities=19%  Similarity=0.349  Sum_probs=70.2

Q ss_pred             hccCCCCCEEEEEcCCCcHH-HHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEE
Q 025428          159 NDKYLSSWSVLDIGTGNGLL-LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMD  236 (253)
Q Consensus       159 l~~~~~~~~VLDiGcGtG~~-~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~  236 (253)
                      +....++.+|||+|||+|.+ ...++..+. +|+|+|+|+.|++.+++++...+. +++++++|+.+++++ ++||+|++
T Consensus        18 ~~~~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~fD~v~~   95 (209)
T 2p8j_A           18 CNESNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNF-KLNISKGDIRKLPFKDESMSFVYS   95 (209)
T ss_dssp             HHHSSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTC-CCCEEECCTTSCCSCTTCEEEEEE
T ss_pred             HhccCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCC-ceEEEECchhhCCCCCCceeEEEE
Confidence            33445678999999999998 455555555 999999999999999999887663 799999999998875 88999999


Q ss_pred             cccccee
Q 025428          237 KGTLDAI  243 (253)
Q Consensus       237 ~~~l~~i  243 (253)
                      ..+++|+
T Consensus        96 ~~~l~~~  102 (209)
T 2p8j_A           96 YGTIFHM  102 (209)
T ss_dssp             CSCGGGS
T ss_pred             cChHHhC
Confidence            9999987

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.43  E-value=5.5e-13  Score=113.97  Aligned_cols=78  Identities=22%  Similarity=0.340  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++.+..+|+|+|+|+.|++.|+++..   ..+++++++|+.+++++ ++||+|++..++|
T Consensus        43 ~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  119 (253)
T 3g5l_A           43 FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAIEPDAYNVVLSSLALH  119 (253)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred             cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCCCCCCeEEEEEchhhh
Confidence            3678999999999999999999977699999999999999999865   34799999999998875 8999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       120 ~~  121 (253)
T 3g5l_A          120 YI  121 (253)
T ss_dssp             GC
T ss_pred             hh
Confidence            97

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.43  E-value=7.2e-13  Score=116.61  Aligned_cols=78  Identities=13%  Similarity=0.246  Sum_probs=72.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++. |. +|+|+|+|+.|++.|++++...++. +++++++|+.++  +++||+|++..++
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~fD~v~~~~~~  147 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF--DEPVDRIVSLGAF  147 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC--CCCCSEEEEESCG
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc--CCCccEEEEcchH
Confidence            56789999999999999999998 74 9999999999999999999998887 799999999887  7899999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      ||+
T Consensus       148 ~~~  150 (302)
T 3hem_A          148 EHF  150 (302)
T ss_dssp             GGT
T ss_pred             Hhc
Confidence            998

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.42  E-value=6.9e-13  Score=116.56  Aligned_cols=81  Identities=16%  Similarity=0.293  Sum_probs=70.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHh--cCCCcEEEEeCCHHHHHHHHHHHHhc--CCCceEEEEeccCCCcCC-------CCc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSK--QGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVDDVLDTKLE-------RQF  231 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~--~g~~~v~gvD~s~~~l~~ar~~~~~~--g~~~i~~~~~D~~~~~~~-------~~f  231 (253)
                      .++.+|||||||+|.++..+++  .+..+|+|+|+|+.|++.|+++++..  +..+++++++|+.++++.       ++|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            3678999999999999999996  33559999999999999999998876  235899999999998753       589


Q ss_pred             cEEEEcccccee
Q 025428          232 QLVMDKGTLDAI  243 (253)
Q Consensus       232 D~Vi~~~~l~~i  243 (253)
                      |+|++..++||+
T Consensus       115 D~V~~~~~l~~~  126 (299)
T 3g5t_A          115 DMITAVECAHWF  126 (299)
T ss_dssp             EEEEEESCGGGS
T ss_pred             eEEeHhhHHHHh
Confidence            999999999997

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.42  E-value=1.4e-12  Score=111.31  Aligned_cols=77  Identities=29%  Similarity=0.481  Sum_probs=68.4

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcc-ccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG-TLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~-~l~~  242 (253)
                      ++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|++++...+. +++++++|+.+++++++||+|++.. ++++
T Consensus        41 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~v~~~~~~~~~  118 (252)
T 1wzn_A           41 EVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIMY  118 (252)
T ss_dssp             CCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCCSCEEEEEECSSGGGG
T ss_pred             CCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhcccCCCccEEEEcCCchhc
Confidence            567999999999999999999976 999999999999999999988776 7999999999987778999999864 3443

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.42  E-value=3.7e-13  Score=112.42  Aligned_cols=76  Identities=18%  Similarity=0.242  Sum_probs=69.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.|++.+++++.    .+++++++|+.+++++++||+|++..++||
T Consensus        44 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~~~~fD~v~~~~~l~~  118 (220)
T 3hnr_A           44 KSFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEVPTSIDTIVSTYAFHH  118 (220)
T ss_dssp             TCCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCCCSCCSEEEEESCGGG
T ss_pred             cCCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCCCCCeEEEEECcchhc
Confidence            3678999999999999999999965 99999999999999999865    478999999999877789999999999998


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus       119 ~  119 (220)
T 3hnr_A          119 L  119 (220)
T ss_dssp             S
T ss_pred             C
Confidence            7

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.42  E-value=5.3e-13  Score=114.88  Aligned_cols=75  Identities=23%  Similarity=0.293  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcc-ccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG-TLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~-~l~  241 (253)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.|++++.     +++++++|+.+++++++||+|++.. +|+
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~~~~fD~v~~~~~~l~  122 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSLGRRFSAVTCMFSSIG  122 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCCSCCEEEEEECTTGGG
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCccCCcCEEEEcCchhh
Confidence            3568999999999999999999965 89999999999999998753     7899999999988888999999998 999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       123 ~~  124 (263)
T 3pfg_A          123 HL  124 (263)
T ss_dssp             GS
T ss_pred             hc
Confidence            87

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.41  E-value=1.6e-12  Score=105.54  Aligned_cols=91  Identities=20%  Similarity=0.275  Sum_probs=77.0

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc--eEEEEeccCCCcC
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKL  227 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~--i~~~~~D~~~~~~  227 (253)
                      .....+++.+.. .++.+|||+|||+|.++..+++. ..+++|+|+|+.+++.+++++...++.+  ++++++|+.+...
T Consensus        39 ~~~~~l~~~~~~-~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~  116 (194)
T 1dus_A           39 KGTKILVENVVV-DKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVK  116 (194)
T ss_dssp             HHHHHHHHHCCC-CTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCT
T ss_pred             hHHHHHHHHccc-CCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcccc
Confidence            344555555543 47789999999999999999999 4599999999999999999999888876  9999999988655


Q ss_pred             CCCccEEEEccccce
Q 025428          228 ERQFQLVMDKGTLDA  242 (253)
Q Consensus       228 ~~~fD~Vi~~~~l~~  242 (253)
                      +++||+|+++.++|+
T Consensus       117 ~~~~D~v~~~~~~~~  131 (194)
T 1dus_A          117 DRKYNKIITNPPIRA  131 (194)
T ss_dssp             TSCEEEEEECCCSTT
T ss_pred             cCCceEEEECCCccc
Confidence            578999999888775

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.41  E-value=6.1e-13  Score=113.82  Aligned_cols=78  Identities=24%  Similarity=0.420  Sum_probs=70.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++.+|||+|||+|.++..+++. +. +|+|+|+|+.|++.|+++....  .+++++++|+.+++++ ++||+|++..++
T Consensus        54 ~~~~~vLdiG~G~G~~~~~l~~~~~~-~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l  130 (266)
T 3ujc_A           54 NENSKVLDIGSGLGGGCMYINEKYGA-HTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEFPENNFDLIYSRDAI  130 (266)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCCCTTCEEEEEEESCG
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCCCCCcEEEEeHHHHH
Confidence            46789999999999999999997 55 9999999999999999987654  5899999999998875 899999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      ||+
T Consensus       131 ~~~  133 (266)
T 3ujc_A          131 LAL  133 (266)
T ss_dssp             GGS
T ss_pred             Hhc
Confidence            998

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.40  E-value=5.3e-13  Score=113.77  Aligned_cols=79  Identities=15%  Similarity=0.177  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..++..+..+|+|+|+|+.|++.+++++...  .+++++++|+.+++++ ++||+|++..++|
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  169 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATLPPNTYDLIVIQWTAI  169 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCCCCCCeEEEEEcchhh
Confidence            467899999999999999999887668999999999999999987654  4799999999988765 7999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       170 ~~  171 (254)
T 1xtp_A          170 YL  171 (254)
T ss_dssp             GS
T ss_pred             hC
Confidence            97

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.40  E-value=1.2e-12  Score=108.53  Aligned_cols=78  Identities=17%  Similarity=0.234  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      .++.+|||+|||+|.++..+++.|..+|+|+|+|+.+++.++++++.+++ +++++++|+.+++  ++||+|+++..++.
T Consensus        48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--~~~D~v~~~~p~~~  124 (207)
T 1wy7_A           48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN--SRVDIVIMNPPFGS  124 (207)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC--CCCSEEEECCCCSS
T ss_pred             CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC--CCCCEEEEcCCCcc
Confidence            46789999999999999999999776899999999999999999998887 8999999998863  58999999998876


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      .
T Consensus       125 ~  125 (207)
T 1wy7_A          125 Q  125 (207)
T ss_dssp             S
T ss_pred             c
Confidence            5

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.40  E-value=1.7e-12  Score=108.62  Aligned_cols=79  Identities=30%  Similarity=0.423  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.|+++....+ .+++++++|+.+++++ ++||+|+++.+++
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~~~D~v~~~~~~~  114 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSFEDKTFDYVIFIDSIV  114 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCCCCCcEEEEEEcCchH
Confidence            3477999999999999999999966 99999999999999999988777 5899999999998765 7999999999855


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      +.
T Consensus       115 ~~  116 (227)
T 1ve3_A          115 HF  116 (227)
T ss_dssp             GC
T ss_pred             hC
Confidence            43

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.40  E-value=8e-13  Score=111.83  Aligned_cols=77  Identities=29%  Similarity=0.414  Sum_probs=69.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..+++.|. +|+|+|+|+.+++.++++.   ...+++++++|+.+++++ ++||+|++..++|
T Consensus        52 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  127 (242)
T 3l8d_A           52 KKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPFENEQFEAIMAINSLE  127 (242)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSSCTTCEEEEEEESCTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCCCCCCccEEEEcChHh
Confidence            4678999999999999999999966 9999999999999999874   224799999999998875 8999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       128 ~~  129 (242)
T 3l8d_A          128 WT  129 (242)
T ss_dssp             SS
T ss_pred             hc
Confidence            87

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.40  E-value=1.3e-12  Score=109.68  Aligned_cols=80  Identities=28%  Similarity=0.521  Sum_probs=72.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-----ceEEEEeccCCCcCC-CCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-----CIKFLVDDVLDTKLE-RQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-----~i~~~~~D~~~~~~~-~~fD~Vi~  236 (253)
                      .++.+|||+|||+|.++..++..+. +|+|+|+|+.+++.+++++...++.     +++++++|+..++++ ++||+|++
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  107 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSFHDSSFDFAVM  107 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCSCTTCEEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCCCCCceeEEEE
Confidence            3678999999999999999999966 9999999999999999998877652     589999999998875 89999999


Q ss_pred             cccccee
Q 025428          237 KGTLDAI  243 (253)
Q Consensus       237 ~~~l~~i  243 (253)
                      ..+++++
T Consensus       108 ~~~l~~~  114 (235)
T 3sm3_A          108 QAFLTSV  114 (235)
T ss_dssp             ESCGGGC
T ss_pred             cchhhcC
Confidence            9999987

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.39  E-value=2.2e-12  Score=107.90  Aligned_cols=77  Identities=17%  Similarity=0.055  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc-CCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-LERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~-~~~~fD~Vi~~~~l  240 (253)
                      .++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|+++++.+++. +++++++|+.+.. ...+||+|++...+
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~~~~~  132 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALADLPLPEAVFIGGGG  132 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTTSCCCSEEEECSCC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhcccCCCCCEEEECCcc
Confidence            57789999999999999999999 449999999999999999999999998 8999999998843 33689999987644

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.39  E-value=6.5e-13  Score=109.73  Aligned_cols=73  Identities=18%  Similarity=0.323  Sum_probs=67.2

Q ss_pred             CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccccee
Q 025428          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDAI  243 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~i  243 (253)
                      +.+|||+|||+|.++..++..|. +++|+|+|+.|++.++++.     .+++++++|+.+++++ ++||+|++..+++|+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~~  115 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH-----PSVTFHHGTITDLSDSPKRWAGLLAWYSLIHM  115 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC-----TTSEEECCCGGGGGGSCCCEEEEEEESSSTTC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC-----CCCeEEeCcccccccCCCCeEEEEehhhHhcC
Confidence            78999999999999999999976 9999999999999999873     4789999999998865 899999999999997

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.39  E-value=1.1e-12  Score=108.53  Aligned_cols=75  Identities=27%  Similarity=0.395  Sum_probs=64.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      .++.+|||+|||+|.++..++..|..+|+|+|+|+.|++.|++++.     +++++++|+.+++  ++||+|+++.++|+
T Consensus        50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~--~~~D~v~~~~p~~~  122 (200)
T 1ne2_A           50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS--GKYDTWIMNPPFGS  122 (200)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC--CCEEEEEECCCC--
T ss_pred             CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC--CCeeEEEECCCchh
Confidence            4678999999999999999999877689999999999999999864     7899999999864  78999999999998


Q ss_pred             ec
Q 025428          243 IG  244 (253)
Q Consensus       243 i~  244 (253)
                      +.
T Consensus       123 ~~  124 (200)
T 1ne2_A          123 VV  124 (200)
T ss_dssp             --
T ss_pred             cc
Confidence            73

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.38  E-value=6.5e-13  Score=116.95  Aligned_cols=83  Identities=18%  Similarity=0.249  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCC-----------------------------
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGF-----------------------------  212 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~-----------------------------  212 (253)
                      .++.+|||||||+|.++..++.. +..+|+|+|+|+.||+.|++++...+.                             
T Consensus        45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  124 (292)
T 3g07_A           45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS  124 (292)
T ss_dssp             TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred             cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence            46789999999999999999998 445999999999999999998765432                             


Q ss_pred             -----------------------------CceEEEEeccCCCc------CCCCccEEEEccccceecc
Q 025428          213 -----------------------------SCIKFLVDDVLDTK------LERQFQLVMDKGTLDAIGL  245 (253)
Q Consensus       213 -----------------------------~~i~~~~~D~~~~~------~~~~fD~Vi~~~~l~~i~~  245 (253)
                                                   .+++|+++|+....      ..++||+|++..+++|+++
T Consensus       125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl  192 (292)
T 3g07_A          125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHL  192 (292)
T ss_dssp             -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHH
T ss_pred             cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhh
Confidence                                         27999999998765      3489999999999988753

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.38  E-value=2.2e-12  Score=109.75  Aligned_cols=79  Identities=19%  Similarity=0.179  Sum_probs=68.4

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC------CCccEEE
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE------RQFQLVM  235 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~------~~fD~Vi  235 (253)
                      ..++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++.   ..+++++++|+.+++..      ..||+|+
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~  129 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENT---AANISYRLLDGLVPEQAAQIHSEIGDANIY  129 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSC---CTTEEEEECCTTCHHHHHHHHHHHCSCEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCc---ccCceEEECcccccccccccccccCccEEE
Confidence            35678999999999999999999976 99999999999999999862   23799999999987542      2489999


Q ss_pred             Eccccceec
Q 025428          236 DKGTLDAIG  244 (253)
Q Consensus       236 ~~~~l~~i~  244 (253)
                      +..++|++.
T Consensus       130 ~~~~~~~~~  138 (245)
T 3ggd_A          130 MRTGFHHIP  138 (245)
T ss_dssp             EESSSTTSC
T ss_pred             EcchhhcCC
Confidence            999999983

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.38  E-value=1.6e-12  Score=112.95  Aligned_cols=84  Identities=19%  Similarity=0.351  Sum_probs=72.2

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCcc
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ  232 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD  232 (253)
                      ..+++.+.. .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++.     .++.++++|+.+++++++||
T Consensus        47 ~~l~~~l~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~fD  119 (279)
T 3ccf_A           47 EDLLQLLNP-QPGEFILDLGCGTGQLTEKIAQSGA-EVLGTDNAATMIEKARQNY-----PHLHFDVADARNFRVDKPLD  119 (279)
T ss_dssp             CHHHHHHCC-CTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTCCCSSCEE
T ss_pred             HHHHHHhCC-CCCCEEEEecCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHhhC-----CCCEEEECChhhCCcCCCcC
Confidence            344444432 4678999999999999999999754 9999999999999999875     47899999999988778999


Q ss_pred             EEEEcccccee
Q 025428          233 LVMDKGTLDAI  243 (253)
Q Consensus       233 ~Vi~~~~l~~i  243 (253)
                      +|++..++||+
T Consensus       120 ~v~~~~~l~~~  130 (279)
T 3ccf_A          120 AVFSNAMLHWV  130 (279)
T ss_dssp             EEEEESCGGGC
T ss_pred             EEEEcchhhhC
Confidence            99999999987

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.38  E-value=1.3e-12  Score=112.81  Aligned_cols=91  Identities=15%  Similarity=0.185  Sum_probs=75.7

Q ss_pred             chHHHHhccCC-CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC---
Q 025428          153 SEPVEENDKYL-SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL---  227 (253)
Q Consensus       153 ~~l~~~l~~~~-~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~---  227 (253)
                      +.++..+.... ++.+|||+|||+|.++..++.++..+|+|+|+++.+++.|++++..+++. +++++++|+.++..   
T Consensus        37 ~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~  116 (259)
T 3lpm_A           37 AVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIP  116 (259)
T ss_dssp             HHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSC
T ss_pred             HHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhc
Confidence            34455555555 78899999999999999999996559999999999999999999999987 59999999998763   


Q ss_pred             CCCccEEEEcccccee
Q 025428          228 ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       228 ~~~fD~Vi~~~~l~~i  243 (253)
                      .++||+|+++..+...
T Consensus       117 ~~~fD~Ii~npPy~~~  132 (259)
T 3lpm_A          117 KERADIVTCNPPYFAT  132 (259)
T ss_dssp             TTCEEEEEECCCC---
T ss_pred             cCCccEEEECCCCCCC
Confidence            4899999998776544

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.38  E-value=3.4e-12  Score=105.84  Aligned_cols=79  Identities=10%  Similarity=0.032  Sum_probs=70.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.+++.|+++++..++.+++++++|+.+.... ++||+|++..++
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~D~i~~~~~~  118 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLDDLPDPDRVFIGGSG  118 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCTTSCCCSEEEESCCT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhhcCCCCCEEEECCCC
Confidence            577899999999999999999985 359999999999999999999998888899999999776443 789999998875


Q ss_pred             c
Q 025428          241 D  241 (253)
Q Consensus       241 ~  241 (253)
                      +
T Consensus       119 ~  119 (204)
T 3e05_A          119 G  119 (204)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.38  E-value=5.2e-13  Score=115.43  Aligned_cols=107  Identities=21%  Similarity=0.247  Sum_probs=81.8

Q ss_pred             hcceeecCCCcCCccccc-cchHHHHhccC-CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC
Q 025428          134 SLCISISQGHMLNHVEDL-KSEPVEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  211 (253)
Q Consensus       134 ~~~~~i~~~~~~~~~~~~-~~~l~~~l~~~-~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g  211 (253)
                      .+.+.+.++..++++.+. +..+++.+... .++.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|++++..++
T Consensus        88 ~~~~~l~p~~~fgtg~~~tt~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~  166 (254)
T 2nxc_A           88 EIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNG  166 (254)
T ss_dssp             SEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTT
T ss_pred             ceEEEECCCccccCCCCHHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcC
Confidence            345667777777765544 44555555443 5678999999999999999999987 99999999999999999999988


Q ss_pred             CCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          212 FSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       212 ~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      +. ++++++|+.+....++||+|+++...++
T Consensus       167 ~~-v~~~~~d~~~~~~~~~fD~Vv~n~~~~~  196 (254)
T 2nxc_A          167 VR-PRFLEGSLEAALPFGPFDLLVANLYAEL  196 (254)
T ss_dssp             CC-CEEEESCHHHHGGGCCEEEEEEECCHHH
T ss_pred             Cc-EEEEECChhhcCcCCCCCEEEECCcHHH
Confidence            86 9999999877422478999999876554

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.38  E-value=2.2e-12  Score=106.48  Aligned_cols=83  Identities=19%  Similarity=0.262  Sum_probs=70.9

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CC
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQ  230 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~  230 (253)
                      ...+..++....++ +|||+|||+|.++..+++.|. +++|+|+|+.|++.|++++...+. +++++++|+.+++++ ++
T Consensus        18 ~~~l~~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~   94 (202)
T 2kw5_A           18 NDFLVSVANQIPQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDIVADA   94 (202)
T ss_dssp             CSSHHHHHHHSCSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSCCTTT
T ss_pred             hHHHHHHHHhCCCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCCCcCC
Confidence            33445555545566 999999999999999999976 999999999999999999988776 899999999998765 89


Q ss_pred             ccEEEEc
Q 025428          231 FQLVMDK  237 (253)
Q Consensus       231 fD~Vi~~  237 (253)
                      ||+|++.
T Consensus        95 fD~v~~~  101 (202)
T 2kw5_A           95 WEGIVSI  101 (202)
T ss_dssp             CSEEEEE
T ss_pred             ccEEEEE
Confidence            9999984

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.38  E-value=9.8e-13  Score=115.59  Aligned_cols=79  Identities=18%  Similarity=0.299  Sum_probs=69.3

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC---CceEEEEeccCCCcCCCCccEEEEc-cc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTKLERQFQLVMDK-GT  239 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~---~~i~~~~~D~~~~~~~~~fD~Vi~~-~~  239 (253)
                      ++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|++++...++   .+++++++|+.+++++++||+|++. .+
T Consensus        82 ~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~~  160 (299)
T 3g2m_A           82 VSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFALDKRFGTVVISSGS  160 (299)
T ss_dssp             CCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCCSCCEEEEEECHHH
T ss_pred             CCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCcCCCcCEEEECCcc
Confidence            345999999999999999999975 899999999999999999987764   4799999999998888999999864 56


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      +|++
T Consensus       161 ~~~~  164 (299)
T 3g2m_A          161 INEL  164 (299)
T ss_dssp             HTTS
T ss_pred             cccC
Confidence            6654

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.37  E-value=8.3e-13  Score=105.63  Aligned_cols=88  Identities=15%  Similarity=0.131  Sum_probs=72.3

Q ss_pred             cchHHHHhccCC-CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---
Q 025428          152 KSEPVEENDKYL-SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---  227 (253)
Q Consensus       152 ~~~l~~~l~~~~-~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---  227 (253)
                      ...++..+.... ++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++..+++ +++++++|+.+...   
T Consensus        28 ~~~~~~~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~  105 (171)
T 1ws6_A           28 RKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAK  105 (171)
T ss_dssp             HHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHH
T ss_pred             HHHHHHHHHhhccCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhh
Confidence            334444444322 678999999999999999999977 599999999999999999998888 89999999987421   


Q ss_pred             --CCCccEEEEccccc
Q 025428          228 --ERQFQLVMDKGTLD  241 (253)
Q Consensus       228 --~~~fD~Vi~~~~l~  241 (253)
                        .++||+|+++.+++
T Consensus       106 ~~~~~~D~i~~~~~~~  121 (171)
T 1ws6_A          106 AQGERFTVAFMAPPYA  121 (171)
T ss_dssp             HTTCCEEEEEECCCTT
T ss_pred             ccCCceEEEEECCCCc
Confidence              23899999988776

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.37  E-value=1.9e-12  Score=109.44  Aligned_cols=78  Identities=22%  Similarity=0.334  Sum_probs=69.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..+++.|..+++|+|+|+.|++.++++...   .+++++++|+.+++++ ++||+|++..++|
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  118 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHLPQDSFDLAYSSLALH  118 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCCCTTCEEEEEEESCGG
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccCCCCCceEEEEecccc
Confidence            46789999999999999999999766999999999999999987643   3689999999988764 8999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       119 ~~  120 (243)
T 3bkw_A          119 YV  120 (243)
T ss_dssp             GC
T ss_pred             cc
Confidence            87

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.37  E-value=2.8e-12  Score=115.85  Aligned_cols=80  Identities=20%  Similarity=0.293  Sum_probs=72.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+ |++.|+++++.+++ .+++++++|+.+++++++||+|++..+++
T Consensus        49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~~~~~~D~Ivs~~~~~  127 (348)
T 2y1w_A           49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  127 (348)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEEECCCBT
T ss_pred             CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCCCCCceeEEEEeCchh
Confidence            46789999999999999999999777999999997 99999999999888 47999999999987778999999998877


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       128 ~~  129 (348)
T 2y1w_A          128 ML  129 (348)
T ss_dssp             TB
T ss_pred             cC
Confidence            76

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.37  E-value=1.9e-12  Score=104.36  Aligned_cols=84  Identities=19%  Similarity=0.285  Sum_probs=71.1

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCc
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQF  231 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~f  231 (253)
                      ..+.+.+. ..++.+|||+|||+|.++..+++. ..+++|+|+|+.+++.+++++..+++.+++++++|+.+ +++ ++|
T Consensus        25 ~~~~~~~~-~~~~~~vLdiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~~~~~~~  101 (183)
T 2yxd_A           25 AVSIGKLN-LNKDDVVVDVGCGSGGMTVEIAKR-CKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-VLDKLEF  101 (183)
T ss_dssp             HHHHHHHC-CCTTCEEEEESCCCSHHHHHHHTT-SSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-HGGGCCC
T ss_pred             HHHHHHcC-CCCCCEEEEeCCCCCHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-cccCCCC
Confidence            34444443 356789999999999999999994 55999999999999999999999988889999999988 444 789


Q ss_pred             cEEEEccc
Q 025428          232 QLVMDKGT  239 (253)
Q Consensus       232 D~Vi~~~~  239 (253)
                      |+|+++.+
T Consensus       102 D~i~~~~~  109 (183)
T 2yxd_A          102 NKAFIGGT  109 (183)
T ss_dssp             SEEEECSC
T ss_pred             cEEEECCc
Confidence            99999876

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.37  E-value=1.3e-13  Score=119.39  Aligned_cols=83  Identities=18%  Similarity=0.230  Sum_probs=67.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC--C---------------------------C
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG--F---------------------------S  213 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g--~---------------------------~  213 (253)
                      .++.+|||||||+|.++..++..|+.+|+|+|+|+.||+.|+++++...  +                           .
T Consensus        54 ~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~  133 (263)
T 2a14_A           54 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  133 (263)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHh
Confidence            4677999999999999888888887789999999999999998875431  0                           1


Q ss_pred             ceE-EEEeccCCC-cC----CCCccEEEEccccceecc
Q 025428          214 CIK-FLVDDVLDT-KL----ERQFQLVMDKGTLDAIGL  245 (253)
Q Consensus       214 ~i~-~~~~D~~~~-~~----~~~fD~Vi~~~~l~~i~~  245 (253)
                      ++. ++++|+.+. ++    .++||+|++..+|||+..
T Consensus       134 ~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~  171 (263)
T 2a14_A          134 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC  171 (263)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS
T ss_pred             hhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcC
Confidence            244 899999884 22    368999999999999743

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.36  E-value=3e-12  Score=115.72  Aligned_cols=80  Identities=18%  Similarity=0.347  Sum_probs=71.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+ |++.|+++++.+++.+ ++++++|+.+++++ ++||+|++..+.
T Consensus        65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s~-~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~~~~  143 (349)
T 3q7e_A           65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSS-ISDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  143 (349)
T ss_dssp             HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcHH-HHHHHHHHHHHcCCCCcEEEEECcHHHccCCCCceEEEEEcccc
Confidence            46789999999999999999999877999999995 9999999999998875 99999999999876 899999997765


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +++
T Consensus       144 ~~l  146 (349)
T 3q7e_A          144 YCL  146 (349)
T ss_dssp             BTB
T ss_pred             ccc
Confidence            554

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.36  E-value=2.4e-12  Score=117.48  Aligned_cols=80  Identities=19%  Similarity=0.320  Sum_probs=72.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..+++.|..+|+|+|+| .|++.|+++++.+++.+ ++++++|+.+++++++||+|++..+.+
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~Iv~~~~~~  140 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISLPEKVDVIISEWMGY  140 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCCSSCEEEEEECCCBT
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCcCCcceEEEEcChhh
Confidence            5678999999999999999999988799999999 99999999999999864 999999999988778999999976555


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ++
T Consensus       141 ~l  142 (376)
T 3r0q_C          141 FL  142 (376)
T ss_dssp             TB
T ss_pred             cc
Confidence            54

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.36  E-value=9.7e-13  Score=111.79  Aligned_cols=76  Identities=13%  Similarity=0.122  Sum_probs=66.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC--cCC-CCccEEEE-cc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KLE-RQFQLVMD-KG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~--~~~-~~fD~Vi~-~~  238 (253)
                      .++.+|||||||+|.++..+++.+..+|+|+|+|+.|++.|+++.+..+ .+++++++|+.++  +++ ++||+|++ ..
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~~~~~fD~V~~d~~  137 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhcccCCCceEEEEECCc
Confidence            4677999999999999999988766699999999999999999988777 4899999999887  665 89999999 44


Q ss_pred             c
Q 025428          239 T  239 (253)
Q Consensus       239 ~  239 (253)
                      .
T Consensus       138 ~  138 (236)
T 1zx0_A          138 P  138 (236)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.36  E-value=1.5e-12  Score=113.55  Aligned_cols=74  Identities=19%  Similarity=0.324  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc------CCCCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~------~~~~fD~Vi~  236 (253)
                      .++.+|||||||+|.++..++++|. +|+|+|+|+.|++.|++++...      ++++++.+..      .+++||+|++
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~------~v~~~~~~~~~~~~~~~~~~fD~Vv~  116 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR------CVTIDLLDITAEIPKELAGHFDFVLN  116 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS------CCEEEECCTTSCCCGGGTTCCSEEEE
T ss_pred             CCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc------cceeeeeecccccccccCCCccEEEE
Confidence            5678999999999999999999976 9999999999999999987654      2233333332      2478999999


Q ss_pred             cccccee
Q 025428          237 KGTLDAI  243 (253)
Q Consensus       237 ~~~l~~i  243 (253)
                      +.++||+
T Consensus       117 ~~~l~~~  123 (261)
T 3iv6_A          117 DRLINRF  123 (261)
T ss_dssp             ESCGGGS
T ss_pred             hhhhHhC
Confidence            9999986

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=99.36  E-value=1.9e-12  Score=118.37  Aligned_cols=74  Identities=23%  Similarity=0.347  Sum_probs=68.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~  237 (253)
                      .++++|||||||||.++..+++.|+++|+|||.|+ |++.|+++++.+|+. +|+++++|+.++.++++||+|++.
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~lpe~~DvivsE  156 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVELPEQVDAIVSE  156 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECC
T ss_pred             cCCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeecCCccccEEEee
Confidence            36789999999999999999999999999999996 899999999999987 499999999999888999999984

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.36  E-value=8.3e-13  Score=109.80  Aligned_cols=78  Identities=15%  Similarity=0.123  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      .+..+|||+|||+|.++..++..  +. +++++|+|+.|++.+++++..+|+. ++++  .|......+++||+|+...+
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a-~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~~~~~~~~~DvVLa~k~  124 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKI-IYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKESDVYKGTYDVVFLLKM  124 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCC-EEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCHHHHTTSEEEEEEEETC
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCC-EEEEEeCCHHHHHHHHHHHHhcCCCccEEE--ecccccCCCCCcChhhHhhH
Confidence            46789999999999999999877  34 9999999999999999999999986 4666  67666556689999999999


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      ||++
T Consensus       125 LHlL  128 (200)
T 3fzg_A          125 LPVL  128 (200)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            9998

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.36  E-value=3.3e-12  Score=107.95  Aligned_cols=78  Identities=26%  Similarity=0.375  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcc-ccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG-TLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~-~l~  241 (253)
                      .++.+|||+|||+|.++..+++.  .+++|+|+|+.|++.|++++...+ .+++++++|+.+++++++||+|++.. +++
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~~~~fD~v~~~~~~~~  108 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELELPEPVDAITILCDSLN  108 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCCCCCcCEEEEeCCchh
Confidence            35689999999999999999988  499999999999999999988776 47999999999987778999999986 888


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       109 ~~  110 (243)
T 3d2l_A          109 YL  110 (243)
T ss_dssp             GC
T ss_pred             hc
Confidence            87

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.36  E-value=2e-12  Score=113.17  Aligned_cols=77  Identities=12%  Similarity=0.006  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||+|.++..+++.|..+|+|+|+|+.|++.|+++++.+++.+ ++++++|+.++...++||+|+++..
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~~~~fD~Vi~~~p  201 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGYV  201 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECCC
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcccCCccEEEECCc
Confidence            4578999999999999999999977579999999999999999999999875 9999999999877789999998654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.35  E-value=1.1e-12  Score=115.75  Aligned_cols=81  Identities=20%  Similarity=0.186  Sum_probs=72.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHH--hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELS--KQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la--~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      .++.+|||||||+|.++..++  ..+..+|+|+|+|+.|++.|++++...++.+ ++++++|+.+++++++||+|+++.+
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~fD~v~~~~~  196 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDTREGYDLLTSNGL  196 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCCCSCEEEEECCSS
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCccCCeEEEEECCh
Confidence            577899999999999999995  3334499999999999999999998888764 9999999999887799999999999


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      +||+
T Consensus       197 ~~~~  200 (305)
T 3ocj_A          197 NIYE  200 (305)
T ss_dssp             GGGC
T ss_pred             hhhc
Confidence            9987

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.35  E-value=7.8e-13  Score=114.13  Aligned_cols=74  Identities=18%  Similarity=0.155  Sum_probs=66.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.++++.      +++++++|+.+++++ ++||+|++..++|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~  105 (261)
T 3ege_A           33 PKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLALPDKSVDGVISILAIH  105 (261)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCSCTTCBSEEEEESCGG
T ss_pred             CCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCCCCCCEeEEEEcchHh
Confidence            4678999999999999999999765 9999999999999887653      899999999998875 8999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       106 ~~  107 (261)
T 3ege_A          106 HF  107 (261)
T ss_dssp             GC
T ss_pred             hc
Confidence            97

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.35  E-value=3.2e-12  Score=107.72  Aligned_cols=78  Identities=23%  Similarity=0.252  Sum_probs=69.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-CCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-LERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.+++.+++++...+  +++++++|+.+.. ..++||+|++..+++
T Consensus        69 ~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~fD~v~~~~~~~  145 (231)
T 1vbf_A           69 HKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYN--NIKLILGDGTLGYEEEKPYDRVVVWATAP  145 (231)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCS--SEEEEESCGGGCCGGGCCEEEEEESSBBS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEECCcccccccCCCccEEEECCcHH
Confidence            567899999999999999999996 599999999999999999987766  8999999998733 347899999999998


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ++
T Consensus       146 ~~  147 (231)
T 1vbf_A          146 TL  147 (231)
T ss_dssp             SC
T ss_pred             HH
Confidence            86

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.35  E-value=3e-12  Score=111.52  Aligned_cols=78  Identities=15%  Similarity=0.276  Sum_probs=70.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++. |. +|+|+|+|+.+++.+++++...++. +++++++|+.+++  ++||+|++..++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~fD~v~~~~~l  139 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD--EPVDRIVSIGAF  139 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC--CCCSEEEEESCG
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC--CCeeEEEEeCch
Confidence            46789999999999999999954 66 9999999999999999999888765 7999999998765  899999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +|+
T Consensus       140 ~~~  142 (287)
T 1kpg_A          140 EHF  142 (287)
T ss_dssp             GGT
T ss_pred             hhc
Confidence            998

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.35  E-value=2.5e-12  Score=103.63  Aligned_cols=79  Identities=20%  Similarity=0.123  Sum_probs=67.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc-CC-CCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-LE-RQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~-~~-~~fD~Vi~~~  238 (253)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|++++...++. ++ ++++|+.+.. .. ++||+|++..
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~~  102 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIGG  102 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEECC
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEECC
Confidence            56779999999999999999988 3449999999999999999999988887 78 8899986532 22 7899999999


Q ss_pred             ccce
Q 025428          239 TLDA  242 (253)
Q Consensus       239 ~l~~  242 (253)
                      ++++
T Consensus       103 ~~~~  106 (178)
T 3hm2_A          103 GLTA  106 (178)
T ss_dssp             -TTC
T ss_pred             cccH
Confidence            8876

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.35  E-value=4.2e-12  Score=106.26  Aligned_cols=77  Identities=19%  Similarity=0.242  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC-CCccEEEEccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE-RQFQLVMDKGT  239 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~-~~fD~Vi~~~~  239 (253)
                      ++.+|||||||+|.++..+++.. ..+++|+|+|+.+++.|++++...++.+++++++|+.+++  ++ ++||+|+++..
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~~  120 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFS  120 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESC
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEECC
Confidence            56799999999999999999883 3499999999999999999999988889999999999876  43 78999998754


Q ss_pred             c
Q 025428          240 L  240 (253)
Q Consensus       240 l  240 (253)
                      .
T Consensus       121 ~  121 (214)
T 1yzh_A          121 D  121 (214)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.35  E-value=3.6e-12  Score=106.31  Aligned_cols=81  Identities=15%  Similarity=0.120  Sum_probs=71.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC--CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-CCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~--~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-~~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||+|.++..+++.+.  .+|+++|+|+.+++.+++++...++.+++++++|+..... .++||+|++..+
T Consensus        76 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~v~~~~~  155 (215)
T 2yxe_A           76 KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVGDGTLGYEPLAPYDRIYTTAA  155 (215)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEESCGGGCCGGGCCEEEEEESSB
T ss_pred             CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCCCCCCeeEEEECCc
Confidence            5778999999999999999999842  4999999999999999999988888889999999865433 478999999999


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      ++++
T Consensus       156 ~~~~  159 (215)
T 2yxe_A          156 GPKI  159 (215)
T ss_dssp             BSSC
T ss_pred             hHHH
Confidence            9876

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.35  E-value=3e-12  Score=117.29  Aligned_cols=90  Identities=20%  Similarity=0.280  Sum_probs=77.3

Q ss_pred             ccchHHHHhccC-----CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC
Q 025428          151 LKSEPVEENDKY-----LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  225 (253)
Q Consensus       151 ~~~~l~~~l~~~-----~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~  225 (253)
                      ..+.+++.+...     .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++++..+++ +++++++|+.+.
T Consensus       215 ~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~-~v~~~~~D~~~~  292 (381)
T 3dmg_A          215 ASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANAL-KAQALHSDVDEA  292 (381)
T ss_dssp             HHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTT
T ss_pred             HHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCC-CeEEEEcchhhc
Confidence            344555555432     3678999999999999999999966 999999999999999999999887 599999999998


Q ss_pred             cCC-CCccEEEEccccce
Q 025428          226 KLE-RQFQLVMDKGTLDA  242 (253)
Q Consensus       226 ~~~-~~fD~Vi~~~~l~~  242 (253)
                      ..+ ++||+|+++.++|+
T Consensus       293 ~~~~~~fD~Ii~npp~~~  310 (381)
T 3dmg_A          293 LTEEARFDIIVTNPPFHV  310 (381)
T ss_dssp             SCTTCCEEEEEECCCCCT
T ss_pred             cccCCCeEEEEECCchhh
Confidence            765 89999999999887

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.34  E-value=5.3e-12  Score=113.74  Aligned_cols=76  Identities=22%  Similarity=0.380  Sum_probs=69.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCC-CCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE-RQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~-~~fD~Vi~~~~  239 (253)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+ |++.|+++++.+++ .+++++++|+.+++++ ++||+|++..+
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~  140 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  140 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcCCCCcEEEEEEcCc
Confidence            46789999999999999999999877999999997 99999999999988 4799999999998876 89999999764

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.34  E-value=2.7e-12  Score=113.96  Aligned_cols=80  Identities=18%  Similarity=0.165  Sum_probs=63.9

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC------ceEEEEecc------CCC--cC-C
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS------CIKFLVDDV------LDT--KL-E  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~------~i~~~~~D~------~~~--~~-~  228 (253)
                      ++.+|||||||+|..+..++..+..+|+|+|+|+.||+.|+++....+..      +++|.+.|+      .++  ++ .
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~  127 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF  127 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred             CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence            46799999999998777776665559999999999999999998766542      367888888      222  12 3


Q ss_pred             CCccEEEEcccccee
Q 025428          229 RQFQLVMDKGTLDAI  243 (253)
Q Consensus       229 ~~fD~Vi~~~~l~~i  243 (253)
                      ++||+|+|..++|++
T Consensus       128 ~~FD~V~~~~~lhy~  142 (302)
T 2vdw_A          128 GKFNIIDWQFAIHYS  142 (302)
T ss_dssp             SCEEEEEEESCGGGT
T ss_pred             CCeeEEEECchHHHh
Confidence            799999999999886

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.34  E-value=2.7e-12  Score=111.95  Aligned_cols=81  Identities=20%  Similarity=0.194  Sum_probs=69.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC----CceEEEEeccCCCc---C-CCCccEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF----SCIKFLVDDVLDTK---L-ERQFQLV  234 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~----~~i~~~~~D~~~~~---~-~~~fD~V  234 (253)
                      .++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|+++....+.    .++.+.++|+.+++   + +++||+|
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V  134 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  134 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence            3668999999999999999999977 999999999999999998754332    36889999998876   4 4899999


Q ss_pred             EEc-cccceec
Q 025428          235 MDK-GTLDAIG  244 (253)
Q Consensus       235 i~~-~~l~~i~  244 (253)
                      ++. .+++|+.
T Consensus       135 ~~~g~~l~~~~  145 (293)
T 3thr_A          135 ICLGNSFAHLP  145 (293)
T ss_dssp             EECTTCGGGSC
T ss_pred             EEcChHHhhcC
Confidence            998 7999874

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.34  E-value=4.4e-12  Score=112.92  Aligned_cols=82  Identities=20%  Similarity=0.238  Sum_probs=72.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC--CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-CCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~--~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-~~~fD~Vi~~~~  239 (253)
                      .++.+|||||||+|.++..+++.+.  .+|+|+|+|+++++.|+++++..|+.+++++++|+.+... .++||+|++..+
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~~~~~~fD~Iv~~~~  153 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSPYDVIFVTVG  153 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEEEEEECSB
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhccccCCCeEEEEEcCC
Confidence            5778999999999999999998843  3599999999999999999999998889999999988544 478999999999


Q ss_pred             cceec
Q 025428          240 LDAIG  244 (253)
Q Consensus       240 l~~i~  244 (253)
                      ++++.
T Consensus       154 ~~~~~  158 (317)
T 1dl5_A          154 VDEVP  158 (317)
T ss_dssp             BSCCC
T ss_pred             HHHHH
Confidence            98863

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.34  E-value=2.8e-12  Score=105.54  Aligned_cols=78  Identities=17%  Similarity=0.128  Sum_probs=68.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCc--CCCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK--LERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~--~~~~fD~Vi~~  237 (253)
                      .++.+|||+|||+|.++..+++.  +..+|+|+|+|+.|++.|+++++.+++ .+++++++|+.+++  .+++||+|+++
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~  100 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCPVKAVMFN  100 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSCEEEEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCCceEEEEc
Confidence            46789999999999999999987  334999999999999999999999888 57999999998875  34889999987


Q ss_pred             ccc
Q 025428          238 GTL  240 (253)
Q Consensus       238 ~~l  240 (253)
                      ..+
T Consensus       101 ~~~  103 (197)
T 3eey_A          101 LGY  103 (197)
T ss_dssp             ESB
T ss_pred             CCc
Confidence            655

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.33  E-value=2.8e-12  Score=110.65  Aligned_cols=78  Identities=15%  Similarity=0.107  Sum_probs=67.8

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCC-CccEEEEc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLER-QFQLVMDK  237 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~-~fD~Vi~~  237 (253)
                      -..++.+|||||||+|.++..+++.+ ..+|+++|+++.+++.|++|++.+|+.+ ++++++|..+...++ +||+|+..
T Consensus        18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~~~~~~~D~Ivia   97 (244)
T 3gnl_A           18 YITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIA   97 (244)
T ss_dssp             TCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred             hCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhccCccccccEEEEe
Confidence            33577899999999999999999986 3489999999999999999999999975 999999999876554 69998864


Q ss_pred             c
Q 025428          238 G  238 (253)
Q Consensus       238 ~  238 (253)
                      +
T Consensus        98 g   98 (244)
T 3gnl_A           98 G   98 (244)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.33  E-value=3.2e-12  Score=109.35  Aligned_cols=78  Identities=15%  Similarity=0.125  Sum_probs=68.0

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCC-CCccEEEEc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLE-RQFQLVMDK  237 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~-~~fD~Vi~~  237 (253)
                      -..++.+|||||||+|.++..+++.+ ..+|+++|+++.+++.|++|++.+|+.+ ++++++|..+...+ .+||+|+..
T Consensus        18 ~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~~~~~~~D~Ivia   97 (230)
T 3lec_A           18 YVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAFEEADNIDTITIC   97 (230)
T ss_dssp             TSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEE
T ss_pred             hCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccccccccCEEEEe
Confidence            33577899999999999999999986 4489999999999999999999999974 99999999987655 379998764


Q ss_pred             c
Q 025428          238 G  238 (253)
Q Consensus       238 ~  238 (253)
                      +
T Consensus        98 G   98 (230)
T 3lec_A           98 G   98 (230)
T ss_dssp             E
T ss_pred             C
Confidence            4

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.33  E-value=2.1e-12  Score=111.54  Aligned_cols=77  Identities=17%  Similarity=0.161  Sum_probs=68.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----CCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~~~fD~Vi~~  237 (253)
                      .++.+|||||||+|..+..++.. +..+|+++|+|+.+++.|+++++.+++.|++++++|+.+++.    .++||+|+++
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~  158 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR  158 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence            35679999999999999999987 445999999999999999999999999889999999988764    3789999997


Q ss_pred             cc
Q 025428          238 GT  239 (253)
Q Consensus       238 ~~  239 (253)
                      .+
T Consensus       159 a~  160 (249)
T 3g89_A          159 AV  160 (249)
T ss_dssp             SS
T ss_pred             Cc
Confidence            54

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.33  E-value=4.6e-12  Score=112.13  Aligned_cols=78  Identities=13%  Similarity=0.223  Sum_probs=71.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++. |. +|+|+|+|+.|++.|++++...++. +++++++|+.+++  ++||+|++..++
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~--~~fD~v~~~~~l  165 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA--EPVDRIVSIEAF  165 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC--CCCSEEEEESCG
T ss_pred             CCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC--CCcCEEEEeChH
Confidence            46789999999999999999988 76 9999999999999999999888875 5999999998774  789999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +|+
T Consensus       166 ~~~  168 (318)
T 2fk8_A          166 EHF  168 (318)
T ss_dssp             GGT
T ss_pred             Hhc
Confidence            998

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.33  E-value=9.1e-12  Score=113.81  Aligned_cols=91  Identities=15%  Similarity=0.148  Sum_probs=73.9

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC---ceEEEEeccCCCcC
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS---CIKFLVDDVLDTKL  227 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~---~i~~~~~D~~~~~~  227 (253)
                      .+.+++.+.. .++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.|++.|+++++.+++.   +++++.+|+.+...
T Consensus       211 ~~~ll~~l~~-~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~~~  289 (375)
T 4dcm_A          211 ARFFMQHLPE-NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVE  289 (375)
T ss_dssp             HHHHHHTCCC-SCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTTCC
T ss_pred             HHHHHHhCcc-cCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhccCC
Confidence            3345555544 345899999999999999999984 459999999999999999999998875   58999999998544


Q ss_pred             CCCccEEEEcccccee
Q 025428          228 ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       228 ~~~fD~Vi~~~~l~~i  243 (253)
                      +++||+|+++..+|+.
T Consensus       290 ~~~fD~Ii~nppfh~~  305 (375)
T 4dcm_A          290 PFRFNAVLCNPPFHQQ  305 (375)
T ss_dssp             TTCEEEEEECCCC---
T ss_pred             CCCeeEEEECCCcccC
Confidence            5799999999998863

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.33  E-value=1e-12  Score=111.68  Aligned_cols=74  Identities=26%  Similarity=0.449  Sum_probs=65.1

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC--cCC-CCccEEEEcc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT--KLE-RQFQLVMDKG  238 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~--~~~-~~fD~Vi~~~  238 (253)
                      ..++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.++++        ++++++|+.+.  +++ ++||+|++..
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~~~~~fD~i~~~~  109 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSLPDKYLDGVMISH  109 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTSCTTCBSEEEEES
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhcCCCCeeEEEECC
Confidence            35678999999999999999999976 899999999999999875        78899998875  444 8999999999


Q ss_pred             ccceec
Q 025428          239 TLDAIG  244 (253)
Q Consensus       239 ~l~~i~  244 (253)
                      +++|+.
T Consensus       110 ~l~~~~  115 (240)
T 3dli_A          110 FVEHLD  115 (240)
T ss_dssp             CGGGSC
T ss_pred             chhhCC
Confidence            999984

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.33  E-value=6.1e-12  Score=107.40  Aligned_cols=76  Identities=20%  Similarity=0.288  Sum_probs=67.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++. +..+++|+|+|+.|++.++++     ..+++++++|+.+++.+++||+|+++.++|
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~fD~v~~~~~l~  106 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWKPAQKADLLYANAVFQ  106 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcCccCCcCEEEEeCchh
Confidence            46679999999999999999988 234999999999999999987     247999999999987558999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       107 ~~  108 (259)
T 2p35_A          107 WV  108 (259)
T ss_dssp             GS
T ss_pred             hC
Confidence            97

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.32  E-value=8.4e-12  Score=108.98  Aligned_cols=83  Identities=13%  Similarity=0.005  Sum_probs=71.8

Q ss_pred             HhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEE
Q 025428          158 ENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD  236 (253)
Q Consensus       158 ~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~  236 (253)
                      .+....++.+|||+|||+|.++..+++. +..+|+|+|+|+.+++.|+++++.+++.++.++++|+.+.+..++||+|++
T Consensus       113 ~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~~~~~~D~Vi~  192 (272)
T 3a27_A          113 MAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVELKDVADRVIM  192 (272)
T ss_dssp             HHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCCCTTCEEEEEE
T ss_pred             HHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcCccCCceEEEE
Confidence            3444567889999999999999999998 345999999999999999999999999899999999998833478999998


Q ss_pred             cccc
Q 025428          237 KGTL  240 (253)
Q Consensus       237 ~~~l  240 (253)
                      +...
T Consensus       193 d~p~  196 (272)
T 3a27_A          193 GYVH  196 (272)
T ss_dssp             CCCS
T ss_pred             CCcc
Confidence            7653

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.32  E-value=7.9e-12  Score=105.05  Aligned_cols=75  Identities=17%  Similarity=0.180  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--C-CCCccEEEEcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLVMDKG  238 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~-~~~fD~Vi~~~  238 (253)
                      .+.+|||||||+|.++..+++. +..+++|+|+|+.|++.|++++...++.|++++++|+.+++  + +++||.|+++.
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~  116 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF  116 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred             CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence            5679999999999999999987 33489999999999999999999999889999999998865  4 37899998754

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.32  E-value=4.2e-12  Score=125.06  Aligned_cols=82  Identities=17%  Similarity=0.245  Sum_probs=72.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC--CcEEEEeCCHHHHHHHHHHHHh------cCCCceEEEEeccCCCcCC-CCccE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANR------DGFSCIKFLVDDVLDTKLE-RQFQL  233 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~--~~v~gvD~s~~~l~~ar~~~~~------~g~~~i~~~~~D~~~~~~~-~~fD~  233 (253)
                      .++.+|||||||+|.++..+++.+.  .+|+|+|+|+.|++.|++++..      .++.+++++++|+.++++. ++||+
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp~~d~sFDl  799 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFDSRLHDVDI  799 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCCTTSCSCCE
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCCcccCCeeE
Confidence            4778999999999999999999962  4999999999999999997653      3566899999999999876 89999


Q ss_pred             EEEccccceec
Q 025428          234 VMDKGTLDAIG  244 (253)
Q Consensus       234 Vi~~~~l~~i~  244 (253)
                      |++..++||+.
T Consensus       800 VV~~eVLeHL~  810 (950)
T 3htx_A          800 GTCLEVIEHME  810 (950)
T ss_dssp             EEEESCGGGSC
T ss_pred             EEEeCchhhCC
Confidence            99999999984

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.31  E-value=2.7e-12  Score=109.48  Aligned_cols=76  Identities=16%  Similarity=0.199  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----CCCccEEEEcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKG  238 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~~~fD~Vi~~~  238 (253)
                      ++.+|||+|||+|.++..++.. ...+|+|+|+|+.|++.|+++++..++.+++++++|+.++++    .++||+|++..
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~  149 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccccccCCccEEEEec
Confidence            5679999999999999999964 334899999999999999999999998889999999988764    47899999866


Q ss_pred             c
Q 025428          239 T  239 (253)
Q Consensus       239 ~  239 (253)
                      +
T Consensus       150 ~  150 (240)
T 1xdz_A          150 V  150 (240)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.31  E-value=3.9e-12  Score=109.88  Aligned_cols=81  Identities=20%  Similarity=0.211  Sum_probs=70.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHH------HHHHHHHHHHhcCCC-ceEEEEec---cCCCcCC-C
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSED------AINLAQSLANRDGFS-CIKFLVDD---VLDTKLE-R  229 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~------~l~~ar~~~~~~g~~-~i~~~~~D---~~~~~~~-~  229 (253)
                      .++.+|||||||+|.++..+++. |. .+|+|+|+|+.      |++.|++++...++. +++++++|   ...++++ +
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~  121 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ  121 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGGGTTC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCCCCCC
Confidence            57789999999999999999998 43 49999999997      999999999888874 79999998   3444444 7


Q ss_pred             CccEEEEcccccee
Q 025428          230 QFQLVMDKGTLDAI  243 (253)
Q Consensus       230 ~fD~Vi~~~~l~~i  243 (253)
                      +||+|++..++||+
T Consensus       122 ~fD~v~~~~~l~~~  135 (275)
T 3bkx_A          122 HFDRVVLAHSLWYF  135 (275)
T ss_dssp             CCSEEEEESCGGGS
T ss_pred             CEEEEEEccchhhC
Confidence            99999999999987

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.31  E-value=4.7e-12  Score=108.00  Aligned_cols=76  Identities=20%  Similarity=0.228  Sum_probs=65.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      .++.+|||||||+|.++..+++.+ ..+|+++|+++.+++.|++|++.+|+. +++++++|..+...+ .+||+|+..+
T Consensus        14 ~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l~~~~~~D~IviaG   92 (225)
T 3kr9_A           14 SQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFEETDQVSVITIAG   92 (225)
T ss_dssp             CTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGCCGGGCCCEEEEEE
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhcccCcCCCEEEEcC
Confidence            567899999999999999999986 448999999999999999999999997 499999999764333 3799988644

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.31  E-value=5.8e-12  Score=111.53  Aligned_cols=80  Identities=16%  Similarity=0.125  Sum_probs=66.9

Q ss_pred             hccCCCCCEEEEEcCCCcHHH-HHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEc
Q 025428          159 NDKYLSSWSVLDIGTGNGLLL-QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK  237 (253)
Q Consensus       159 l~~~~~~~~VLDiGcGtG~~~-~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~  237 (253)
                      +....++.+|||||||+|.++ ..+++....+|+|+|+|++|++.|+++++..|+.+++++++|+.+++ +++||+|++.
T Consensus       117 la~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~-d~~FDvV~~~  195 (298)
T 3fpf_A          117 LGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID-GLEFDVLMVA  195 (298)
T ss_dssp             HTTCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG-GCCCSEEEEC
T ss_pred             HcCCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC-CCCcCEEEEC
Confidence            345578899999999999766 45565423499999999999999999999888878999999999875 6899999986


Q ss_pred             cc
Q 025428          238 GT  239 (253)
Q Consensus       238 ~~  239 (253)
                      ..
T Consensus       196 a~  197 (298)
T 3fpf_A          196 AL  197 (298)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.31  E-value=7.4e-12  Score=110.73  Aligned_cols=81  Identities=17%  Similarity=0.163  Sum_probs=69.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc-------CCCceEEEEeccCCCc----C---C
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-------GFSCIKFLVDDVLDTK----L---E  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~-------g~~~i~~~~~D~~~~~----~---~  228 (253)
                      .++.+|||+|||+|.++..+++.+..+++|+|+|+.|++.|+++....       +..+++++++|+.+++    +   +
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~  112 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDKFRDPQ  112 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTTCSSTT
T ss_pred             CCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhhcccCC
Confidence            366799999999999999999876669999999999999999988654       3347999999999875    3   2


Q ss_pred             CCccEEEEcccccee
Q 025428          229 RQFQLVMDKGTLDAI  243 (253)
Q Consensus       229 ~~fD~Vi~~~~l~~i  243 (253)
                      ++||+|++..++|++
T Consensus       113 ~~fD~V~~~~~l~~~  127 (313)
T 3bgv_A          113 MCFDICSCQFVCHYS  127 (313)
T ss_dssp             CCEEEEEEETCGGGG
T ss_pred             CCEEEEEEecchhhc
Confidence            589999999999987

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.31  E-value=8.1e-12  Score=105.09  Aligned_cols=90  Identities=14%  Similarity=0.214  Sum_probs=75.0

Q ss_pred             hHHHHhc-cCCCCCEEEEEcCCCcHHHHHHHhcCC------CcEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEec
Q 025428          154 EPVEEND-KYLSSWSVLDIGTGNGLLLQELSKQGF------SDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDD  221 (253)
Q Consensus       154 ~l~~~l~-~~~~~~~VLDiGcGtG~~~~~la~~g~------~~v~gvD~s~~~l~~ar~~~~~~g-----~~~i~~~~~D  221 (253)
                      .+++.+. ...++.+|||||||+|.++..+++...      .+|+++|+++.+++.|+++++..+     ..+++++++|
T Consensus        69 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d  148 (227)
T 2pbf_A           69 LSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKN  148 (227)
T ss_dssp             HHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECC
T ss_pred             HHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECC
Confidence            4455554 345778999999999999999998732      389999999999999999998877     5689999999


Q ss_pred             cCCCc----C-CCCccEEEEcccccee
Q 025428          222 VLDTK----L-ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       222 ~~~~~----~-~~~fD~Vi~~~~l~~i  243 (253)
                      +.+..    . .++||+|++...++++
T Consensus       149 ~~~~~~~~~~~~~~fD~I~~~~~~~~~  175 (227)
T 2pbf_A          149 IYQVNEEEKKELGLFDAIHVGASASEL  175 (227)
T ss_dssp             GGGCCHHHHHHHCCEEEEEECSBBSSC
T ss_pred             hHhcccccCccCCCcCEEEECCchHHH
Confidence            98864    3 3789999999988865

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.31  E-value=1.2e-11  Score=104.14  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=68.1

Q ss_pred             CCCCEEEEEcCC-CcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-C-CCCccEEEEccc
Q 025428          163 LSSWSVLDIGTG-NGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-L-ERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcG-tG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-~-~~~fD~Vi~~~~  239 (253)
                      .++.+|||+||| +|.++..+++.+..+|+|+|+|+.|++.|++++..+++ +++++++|+..+. + +++||+|+++..
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~~~~~~fD~I~~npp  132 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKGVVEGTFDVIFSAPP  132 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTTTCCSCEEEEEECCC
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhhcccCceeEEEECCC
Confidence            577899999999 99999999998334999999999999999999999988 9999999975432 2 389999999977


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      +++.
T Consensus       133 ~~~~  136 (230)
T 3evz_A          133 YYDK  136 (230)
T ss_dssp             CC--
T ss_pred             CcCC
Confidence            7654

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.31  E-value=8e-12  Score=103.43  Aligned_cols=75  Identities=20%  Similarity=0.196  Sum_probs=67.3

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      ++.+|||+|||+|.++..++.. +..+++|+|+|+.+++.+++++...++.+++++++|+.+.+..++||+|+++.
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~i~~~~  140 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRA  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCccCCcCEEEEec
Confidence            4679999999999999999987 34599999999999999999999998878999999999886558899999865

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.30  E-value=1e-11  Score=106.40  Aligned_cols=80  Identities=18%  Similarity=0.141  Sum_probs=66.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCC---cCC----CCccEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT---KLE----RQFQLV  234 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~---~~~----~~fD~V  234 (253)
                      ++.+|||+|||+|.++..++.+ +..+|+|+|+|+.|++.|+++++.+++.+ ++++++|+.+.   +++    ++||+|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i  144 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  144 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence            4679999999999999999876 23499999999999999999999988875 99999997662   233    589999


Q ss_pred             EEcccccee
Q 025428          235 MDKGTLDAI  243 (253)
Q Consensus       235 i~~~~l~~i  243 (253)
                      +++..+++.
T Consensus       145 ~~npp~~~~  153 (254)
T 2h00_A          145 MCNPPFFAN  153 (254)
T ss_dssp             EECCCCC--
T ss_pred             EECCCCccC
Confidence            999877754

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.30  E-value=5.3e-12  Score=104.81  Aligned_cols=72  Identities=22%  Similarity=0.324  Sum_probs=64.8

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~  242 (253)
                      ++.+|||+|||+|.++..+   +..+++|+|+|+.|++.++++.     .+++++++|+.+++++ ++||+|++..++||
T Consensus        36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  107 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPFPGESFDVVLLFTTLEF  107 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCSCSSCEEEEEEESCTTT
T ss_pred             CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCCCCCcEEEEEEcChhhh
Confidence            6679999999999999888   4558999999999999999886     4789999999998875 79999999999998


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus       108 ~  108 (211)
T 2gs9_A          108 V  108 (211)
T ss_dssp             C
T ss_pred             c
Confidence            7

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=99.30  E-value=6.8e-12  Score=118.19  Aligned_cols=80  Identities=20%  Similarity=0.297  Sum_probs=71.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..+++.|..+|+|+|+|+ |++.|+++++.+++. +++++++|+.+++++++||+|+++.+++
T Consensus       157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~Ivs~~~~~  235 (480)
T 3b3j_A          157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVSLPEQVDIIISEPMGY  235 (480)
T ss_dssp             TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCCCSSCEEEEECCCCHH
T ss_pred             cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCccCCCeEEEEEeCchH
Confidence            46789999999999999999998777999999999 999999999999984 7999999999987778999999988766


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ++
T Consensus       236 ~~  237 (480)
T 3b3j_A          236 ML  237 (480)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.30  E-value=9.2e-12  Score=100.87  Aligned_cols=90  Identities=14%  Similarity=0.206  Sum_probs=73.6

Q ss_pred             ccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCC-
Q 025428          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE-  228 (253)
Q Consensus       151 ~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~-  228 (253)
                      +...+++.+. ..++.+|||+|||+|.++..+++.+ .+++|+|+|+.+++.+++++...++ .+++++++|+.+.... 
T Consensus        21 ~~~~~~~~~~-~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~   98 (192)
T 1l3i_A           21 VRCLIMCLAE-PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCKI   98 (192)
T ss_dssp             HHHHHHHHHC-CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTTS
T ss_pred             HHHHHHHhcC-CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHhcccC
Confidence            3334444443 3577899999999999999999997 6999999999999999999998888 5899999998772222 


Q ss_pred             CCccEEEEccccce
Q 025428          229 RQFQLVMDKGTLDA  242 (253)
Q Consensus       229 ~~fD~Vi~~~~l~~  242 (253)
                      ++||+|++..++++
T Consensus        99 ~~~D~v~~~~~~~~  112 (192)
T 1l3i_A           99 PDIDIAVVGGSGGE  112 (192)
T ss_dssp             CCEEEEEESCCTTC
T ss_pred             CCCCEEEECCchHH
Confidence            68999999887654

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.29  E-value=7.8e-12  Score=108.88  Aligned_cols=79  Identities=25%  Similarity=0.357  Sum_probs=68.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..++.. +..+|+|+|+|+.+++.|+++++.+++.+++++++|+.+...+++||+|+++..++
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~fD~Iv~npPy~  187 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSALAGQQFAMIVSNPPYI  187 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGGTTCCEEEEEECCCCB
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhhcccCCccEEEECCCCC
Confidence            45679999999999999999976 44599999999999999999999988878999999998754357899999985543

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.29  E-value=5.6e-12  Score=106.67  Aligned_cols=75  Identities=19%  Similarity=0.345  Sum_probs=66.2

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC-c--C-CCCccEEEEcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-K--L-ERQFQLVMDKG  238 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~-~--~-~~~fD~Vi~~~  238 (253)
                      .+.+|||||||+|.++..+++.. ...|+|+|+|+.|++.|++++...++.|++++++|+.++ +  + +++||.|+++.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~  113 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF  113 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence            56799999999999999999873 337999999999999999999999998999999999885 2  3 48999999863

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.28  E-value=1.5e-11  Score=104.35  Aligned_cols=89  Identities=15%  Similarity=0.228  Sum_probs=72.7

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-CCCcc
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-ERQFQ  232 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-~~~fD  232 (253)
                      .+++.+ ...++.+|||+|||+|.++..+++.+..+|+++|+++.+++.|++++...++.+++++++|+..... ..+||
T Consensus        82 ~~~~~l-~~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD  160 (235)
T 1jg1_A           82 IMLEIA-NLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKAPYD  160 (235)
T ss_dssp             HHHHHH-TCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCCEE
T ss_pred             HHHHhc-CCCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCcccCCCCCCCcc
Confidence            344444 3357789999999999999999998425999999999999999999999998889999999832212 25699


Q ss_pred             EEEEcccccee
Q 025428          233 LVMDKGTLDAI  243 (253)
Q Consensus       233 ~Vi~~~~l~~i  243 (253)
                      +|++..+++++
T Consensus       161 ~Ii~~~~~~~~  171 (235)
T 1jg1_A          161 VIIVTAGAPKI  171 (235)
T ss_dssp             EEEECSBBSSC
T ss_pred             EEEECCcHHHH
Confidence            99999988876

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.28  E-value=2.3e-11  Score=98.69  Aligned_cols=75  Identities=25%  Similarity=0.390  Sum_probs=66.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEc-ccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDK-GTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~-~~l  240 (253)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++.     .+++++++|+.+++++ ++||+|++. .++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~~D~i~~~~~~~  118 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQISETDFDLIVSAGNVM  118 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCCCCCCEEEEEECCCCG
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCCCCCceeEEEECCcHH
Confidence            4678999999999999999999965 9999999999999999875     3689999999998765 789999998 677


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +++
T Consensus       119 ~~~  121 (195)
T 3cgg_A          119 GFL  121 (195)
T ss_dssp             GGS
T ss_pred             hhc
Confidence            775

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.28  E-value=9.8e-12  Score=104.75  Aligned_cols=75  Identities=25%  Similarity=0.355  Sum_probs=66.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEE-ccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD-KGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~-~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.|++.++++.     .+++++++|+.+++++++||+|++ ..+++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~D~v~~~~~~~~  112 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRLGRKFSAVVSMFSSVG  112 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCCSSCEEEEEECTTGGG
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHcccCCCCcEEEEcCchHh
Confidence            3668999999999999999999965 9999999999999999874     368999999999877789999995 55888


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       113 ~~  114 (239)
T 3bxo_A          113 YL  114 (239)
T ss_dssp             GC
T ss_pred             hc
Confidence            87

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.28  E-value=1.8e-11  Score=109.68  Aligned_cols=80  Identities=29%  Similarity=0.441  Sum_probs=70.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++.|..+|+|+|+| .|++.|+++++.+++. +++++++|+.+++++ ++||+|++..+.
T Consensus        37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~~~~  115 (328)
T 1g6q_1           37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccCCCCcccEEEEeCch
Confidence            3678999999999999999999987799999999 5999999999998886 599999999998876 899999998655


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +++
T Consensus       116 ~~l  118 (328)
T 1g6q_1          116 YFL  118 (328)
T ss_dssp             TTB
T ss_pred             hhc
Confidence            544

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.28  E-value=9.7e-12  Score=105.68  Aligned_cols=79  Identities=14%  Similarity=0.246  Sum_probs=68.1

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC---CCCccEEE
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL---ERQFQLVM  235 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~---~~~fD~Vi  235 (253)
                      ...++.+|||||||+|..+..++... ..+|+++|+++.+++.|+++++..++. +++++++|+.+...   +++||+|+
T Consensus        68 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~  147 (232)
T 3ntv_A           68 RMNNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIF  147 (232)
T ss_dssp             HHHTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEE
T ss_pred             hhcCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEE
Confidence            33467899999999999999999852 459999999999999999999999986 79999999988643   58999999


Q ss_pred             Eccc
Q 025428          236 DKGT  239 (253)
Q Consensus       236 ~~~~  239 (253)
                      +...
T Consensus       148 ~~~~  151 (232)
T 3ntv_A          148 IDAA  151 (232)
T ss_dssp             EETT
T ss_pred             EcCc
Confidence            7653

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.27  E-value=1.3e-11  Score=112.80  Aligned_cols=81  Identities=22%  Similarity=0.332  Sum_probs=70.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhc-----C-C--CceEEEEeccCCC------c
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-----G-F--SCIKFLVDDVLDT------K  226 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~-----g-~--~~i~~~~~D~~~~------~  226 (253)
                      .++.+|||||||+|.++..+++.  ...+|+|+|+|+.|++.|+++++..     | +  .+++++++|+.++      +
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            46789999999999999999986  2349999999999999999988654     3 2  4899999999987      6


Q ss_pred             CC-CCccEEEEcccccee
Q 025428          227 LE-RQFQLVMDKGTLDAI  243 (253)
Q Consensus       227 ~~-~~fD~Vi~~~~l~~i  243 (253)
                      ++ ++||+|+++.+++++
T Consensus       162 ~~~~~fD~V~~~~~l~~~  179 (383)
T 4fsd_A          162 VPDSSVDIVISNCVCNLS  179 (383)
T ss_dssp             CCTTCEEEEEEESCGGGC
T ss_pred             CCCCCEEEEEEccchhcC
Confidence            65 799999999999987

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.27  E-value=1e-11  Score=113.19  Aligned_cols=89  Identities=21%  Similarity=0.247  Sum_probs=75.6

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCC-
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLE-  228 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~-  228 (253)
                      ...++.+.  ..++.+|||+|||+|.++..++..+. .+|+|+|+|+.|++.|+++++.+|+ .+++++++|+.+++++ 
T Consensus       207 a~~l~~~~--~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~~  284 (373)
T 3tm4_A          207 ANAMIELA--ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQYV  284 (373)
T ss_dssp             HHHHHHHH--TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGTC
T ss_pred             HHHHHHhh--cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCccc
Confidence            34444444  46788999999999999999999854 3899999999999999999999998 4799999999998875 


Q ss_pred             CCccEEEEccccce
Q 025428          229 RQFQLVMDKGTLDA  242 (253)
Q Consensus       229 ~~fD~Vi~~~~l~~  242 (253)
                      ++||+|+++..++.
T Consensus       285 ~~fD~Ii~npPyg~  298 (373)
T 3tm4_A          285 DSVDFAISNLPYGL  298 (373)
T ss_dssp             SCEEEEEEECCCC-
T ss_pred             CCcCEEEECCCCCc
Confidence            88999999877654

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.27  E-value=6.2e-12  Score=100.92  Aligned_cols=72  Identities=17%  Similarity=0.255  Sum_probs=64.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++     ..+++++++|   .+++ ++||+|++..+++
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d---~~~~~~~~D~v~~~~~l~   86 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK-----FDSVITLSDP---KEIPDNSVDFILFANSFH   86 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH-----CTTSEEESSG---GGSCTTCEEEEEEESCST
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh-----CCCcEEEeCC---CCCCCCceEEEEEccchh
Confidence            4677999999999999999999975 999999999999999988     3579999999   4444 7899999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus        87 ~~   88 (170)
T 3i9f_A           87 DM   88 (170)
T ss_dssp             TC
T ss_pred             cc
Confidence            87

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.27  E-value=6.9e-12  Score=105.54  Aligned_cols=90  Identities=17%  Similarity=0.178  Sum_probs=71.9

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc--CC
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LE  228 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~--~~  228 (253)
                      .++..+....++.+|||||||+|..+..+++. + ..+|+++|+++.|++.|+++++..++. +++++++|+.+..  +.
T Consensus        48 ~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~  127 (221)
T 3u81_A           48 QIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLK  127 (221)
T ss_dssp             HHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTT
T ss_pred             HHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHH
Confidence            34444444456789999999999999999985 1 349999999999999999999999886 5999999986532  22


Q ss_pred             -----CCccEEEEcccccee
Q 025428          229 -----RQFQLVMDKGTLDAI  243 (253)
Q Consensus       229 -----~~fD~Vi~~~~l~~i  243 (253)
                           ++||+|++....++.
T Consensus       128 ~~~~~~~fD~V~~d~~~~~~  147 (221)
T 3u81_A          128 KKYDVDTLDMVFLDHWKDRY  147 (221)
T ss_dssp             TTSCCCCCSEEEECSCGGGH
T ss_pred             HhcCCCceEEEEEcCCcccc
Confidence                 689999998866554

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.27  E-value=6.8e-12  Score=101.75  Aligned_cols=70  Identities=20%  Similarity=0.245  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      .++.+|||+|||+|.++..+++.+  +|+|+|+|+.|++.         ..+++++++|+.+...+++||+|+++..+++
T Consensus        22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~~~~~fD~i~~n~~~~~   90 (170)
T 3q87_B           22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES---------HRGGNLVRADLLCSINQESVDVVVFNPPYVP   90 (170)
T ss_dssp             CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT---------CSSSCEEECSTTTTBCGGGCSEEEECCCCBT
T ss_pred             CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc---------ccCCeEEECChhhhcccCCCCEEEECCCCcc
Confidence            356799999999999999999996  99999999999997         2478999999988433489999999988876


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      .
T Consensus        91 ~   91 (170)
T 3q87_B           91 D   91 (170)
T ss_dssp             T
T ss_pred             C
Confidence            4

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.27  E-value=1.7e-11  Score=107.89  Aligned_cols=77  Identities=19%  Similarity=0.263  Sum_probs=67.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..+++.+. +|+|+|+|+.|++.+++++...+. .+++++++|+.+.+++ +||+|+++..++
T Consensus        27 ~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~~~-~fD~vv~nlpy~  104 (285)
T 1zq9_A           27 RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLP-FFDTCVANLPYQ  104 (285)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCC-CCSEEEEECCGG
T ss_pred             CCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecccch-hhcEEEEecCcc
Confidence            4678999999999999999999965 999999999999999999877665 4799999999987665 799999975443

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.26  E-value=1.1e-11  Score=108.93  Aligned_cols=77  Identities=12%  Similarity=-0.003  Sum_probs=70.8

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEcc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      ..++.+|||+|||+|.+++.++++|..+|+++|+|+.+++.+++|++.+++.+ ++++++|+.++...+.||.|+++.
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~~~~~D~Vi~~~  200 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY  200 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhccccCCCEEEECC
Confidence            35789999999999999999999987799999999999999999999999975 999999999987778999999864

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.26  E-value=1.3e-11  Score=109.43  Aligned_cols=77  Identities=21%  Similarity=0.277  Sum_probs=64.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+++.|++.+++++...++.+++++++|+.+++++ +||+|+++..++
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~~~-~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~~~-~~D~Vv~n~py~  117 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPLAK-KVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTVFP-KFDVCTANIPYK  117 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTTSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSCCC-CCSEEEEECCGG
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCCcc-cCCEEEEcCCcc
Confidence            4678999999999999999999854 9999999999999999999887877899999999987654 899999976654

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.26  E-value=1.9e-11  Score=113.54  Aligned_cols=104  Identities=17%  Similarity=0.214  Sum_probs=79.2

Q ss_pred             hcceeecCCCcCCccccccchHHHHhc---cCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc
Q 025428          134 SLCISISQGHMLNHVEDLKSEPVEEND---KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (253)
Q Consensus       134 ~~~~~i~~~~~~~~~~~~~~~l~~~l~---~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~  210 (253)
                      ++.+.+.++.+..........+++.+.   ...++.+|||+|||+|.++..+++. ..+|+|+|+|+.|++.|+++++.+
T Consensus       253 g~~~~~~~~~f~q~n~~~~e~l~~~~~~~l~~~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~  331 (433)
T 1uwv_A          253 GLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLN  331 (433)
T ss_dssp             TEEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHT
T ss_pred             CEEEEECcccccccCHHHHHHHHHHHHHhhcCCCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHc
Confidence            344556665555443333444443332   2246679999999999999999998 459999999999999999999999


Q ss_pred             CCCceEEEEeccCCC----cCC-CCccEEEEcc
Q 025428          211 GFSCIKFLVDDVLDT----KLE-RQFQLVMDKG  238 (253)
Q Consensus       211 g~~~i~~~~~D~~~~----~~~-~~fD~Vi~~~  238 (253)
                      ++.|++|+++|+.+.    ++. ++||+|+++.
T Consensus       332 ~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~dP  364 (433)
T 1uwv_A          332 GLQNVTFYHENLEEDVTKQPWAKNGFDKVLLDP  364 (433)
T ss_dssp             TCCSEEEEECCTTSCCSSSGGGTTCCSEEEECC
T ss_pred             CCCceEEEECCHHHHhhhhhhhcCCCCEEEECC
Confidence            998999999999883    222 6899999864

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.26  E-value=1.8e-11  Score=106.06  Aligned_cols=82  Identities=20%  Similarity=0.231  Sum_probs=69.0

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHh---cCCC-ceEEEEeccCCCc-------C-
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANR---DGFS-CIKFLVDDVLDTK-------L-  227 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~---~g~~-~i~~~~~D~~~~~-------~-  227 (253)
                      ...++.+|||+|||+|.++..++.+. ..+|+|+|+++.+++.|++++..   +++. +++++++|+.+..       + 
T Consensus        33 ~~~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~  112 (260)
T 2ozv_A           33 ADDRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLP  112 (260)
T ss_dssp             CCCSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred             cccCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence            33567799999999999999999984 34999999999999999999988   8886 5999999999872       3 


Q ss_pred             CCCccEEEEccccce
Q 025428          228 ERQFQLVMDKGTLDA  242 (253)
Q Consensus       228 ~~~fD~Vi~~~~l~~  242 (253)
                      +++||+|+++..+..
T Consensus       113 ~~~fD~Vv~nPPy~~  127 (260)
T 2ozv_A          113 DEHFHHVIMNPPYND  127 (260)
T ss_dssp             TTCEEEEEECCCC--
T ss_pred             CCCcCEEEECCCCcC
Confidence            478999999866554

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.25  E-value=2e-11  Score=107.41  Aligned_cols=76  Identities=24%  Similarity=0.353  Sum_probs=66.3

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCc---cEEEEccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQF---QLVMDKGT  239 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~f---D~Vi~~~~  239 (253)
                      ++.+|||+|||+|.++..+++.+..+|+|+|+|+.+++.|+++++.+++.+ ++|+++|+.+. ++++|   |+|+++..
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~-~~~~f~~~D~IvsnPP  201 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEP-FKEKFASIEMILSNPP  201 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGG-GGGGTTTCCEEEECCC
T ss_pred             CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhh-cccccCCCCEEEEcCC
Confidence            567999999999999999998833499999999999999999999999875 99999999874 34578   99999844


Q ss_pred             c
Q 025428          240 L  240 (253)
Q Consensus       240 l  240 (253)
                      +
T Consensus       202 y  202 (284)
T 1nv8_A          202 Y  202 (284)
T ss_dssp             C
T ss_pred             C
Confidence            3

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.25  E-value=1.3e-11  Score=104.10  Aligned_cols=90  Identities=12%  Similarity=0.154  Sum_probs=73.4

Q ss_pred             hHHHHhc-cCCCCCEEEEEcCCCcHHHHHHHhc-CC------CcEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEe
Q 025428          154 EPVEEND-KYLSSWSVLDIGTGNGLLLQELSKQ-GF------SDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVD  220 (253)
Q Consensus       154 ~l~~~l~-~~~~~~~VLDiGcGtG~~~~~la~~-g~------~~v~gvD~s~~~l~~ar~~~~~~g-----~~~i~~~~~  220 (253)
                      .+++.+. ...++.+|||+|||+|.++..+++. +.      .+|+++|+++.+++.|++++...+     ..+++++++
T Consensus        73 ~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  152 (227)
T 1r18_A           73 FALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEG  152 (227)
T ss_dssp             HHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEES
T ss_pred             HHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEEC
Confidence            3444443 2356789999999999999999985 42      489999999999999999988766     568999999


Q ss_pred             ccCCCcCC-CCccEEEEcccccee
Q 025428          221 DVLDTKLE-RQFQLVMDKGTLDAI  243 (253)
Q Consensus       221 D~~~~~~~-~~fD~Vi~~~~l~~i  243 (253)
                      |+.+.... ++||+|++...++++
T Consensus       153 d~~~~~~~~~~fD~I~~~~~~~~~  176 (227)
T 1r18_A          153 DGRKGYPPNAPYNAIHVGAAAPDT  176 (227)
T ss_dssp             CGGGCCGGGCSEEEEEECSCBSSC
T ss_pred             CcccCCCcCCCccEEEECCchHHH
Confidence            99874333 789999999988876

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.24  E-value=1.7e-12  Score=107.33  Aligned_cols=79  Identities=25%  Similarity=0.354  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-----CCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-----RQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-----~~fD~Vi~  236 (253)
                      .++.+|||+|||+|.++..+++.+. .+++|+|+|+.|++.|++++..+++ +++++++|+.+....     ++||+|++
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~fD~i~~  107 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERAERGRPWHAIVS  107 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC--------------------CCHHHHHHHHHHHHHTTCCBSEEEE
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhhhccCcccEEEE
Confidence            4678999999999999999999842 3999999999999999999988887 899999999884333     89999999


Q ss_pred             ccccce
Q 025428          237 KGTLDA  242 (253)
Q Consensus       237 ~~~l~~  242 (253)
                      +..++.
T Consensus       108 npp~~~  113 (215)
T 4dzr_A          108 NPPYIP  113 (215)
T ss_dssp             CCCCCC
T ss_pred             CCCCCC
Confidence            866543

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.24  E-value=3.5e-11  Score=111.69  Aligned_cols=103  Identities=18%  Similarity=0.228  Sum_probs=81.0

Q ss_pred             hcceeecCCCcCCccccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC
Q 025428          134 SLCISISQGHMLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS  213 (253)
Q Consensus       134 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~  213 (253)
                      ++.+.+.++.+..........+.+.+....++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.|+++++.+++.
T Consensus       260 g~~f~~~~~~F~q~n~~~~e~l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~  338 (425)
T 2jjq_A          260 DVDYLIHPNSFFQTNSYQAVNLVRKVSELVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD  338 (425)
T ss_dssp             TEEEEECTTSCCCSBHHHHHHHHHHHHHHCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC
T ss_pred             CEEEEEccccccccCHHHHHHHHHHhhccCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc
Confidence            34555666655554444444555444334567899999999999999999985 49999999999999999999999987


Q ss_pred             ceEEEEeccCCCcCCCCccEEEEccc
Q 025428          214 CIKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       214 ~i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                       ++|+++|+.++.. .+||+|+++..
T Consensus       339 -v~~~~~d~~~~~~-~~fD~Vv~dPP  362 (425)
T 2jjq_A          339 -AEFEVASDREVSV-KGFDTVIVDPP  362 (425)
T ss_dssp             -EEEEECCTTTCCC-TTCSEEEECCC
T ss_pred             -EEEEECChHHcCc-cCCCEEEEcCC
Confidence             9999999998753 38999998654

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.24  E-value=3.5e-11  Score=101.07  Aligned_cols=90  Identities=16%  Similarity=0.243  Sum_probs=73.2

Q ss_pred             hHHHHhc-cCCCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHHhcC-----CCceEEEEeccCCC
Q 025428          154 EPVEEND-KYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDG-----FSCIKFLVDDVLDT  225 (253)
Q Consensus       154 ~l~~~l~-~~~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~~~g-----~~~i~~~~~D~~~~  225 (253)
                      .+++.+. ...++.+|||+|||+|.++..+++. |. .+|+++|+++.+++.+++++...+     ..+++++++|+...
T Consensus        66 ~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~  145 (226)
T 1i1n_A           66 YALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMG  145 (226)
T ss_dssp             HHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGC
T ss_pred             HHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccC
Confidence            3444443 2357789999999999999999987 43 399999999999999999988765     35799999999876


Q ss_pred             cC-CCCccEEEEcccccee
Q 025428          226 KL-ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       226 ~~-~~~fD~Vi~~~~l~~i  243 (253)
                      .. .++||+|++...++++
T Consensus       146 ~~~~~~fD~i~~~~~~~~~  164 (226)
T 1i1n_A          146 YAEEAPYDAIHVGAAAPVV  164 (226)
T ss_dssp             CGGGCCEEEEEECSBBSSC
T ss_pred             cccCCCcCEEEECCchHHH
Confidence            54 3789999999888765

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.24  E-value=2.5e-11  Score=103.87  Aligned_cols=75  Identities=23%  Similarity=0.240  Sum_probs=63.4

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHh------cCCCceEEEEeccCC-Cc--C-CCCcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR------DGFSCIKFLVDDVLD-TK--L-ERQFQ  232 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~------~g~~~i~~~~~D~~~-~~--~-~~~fD  232 (253)
                      ++.+|||||||+|.++..+++. +...|+|+|+|+.|++.|+++++.      .++.|++++++|+.+ ++  + +++||
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~D  125 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQLT  125 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCEE
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCee
Confidence            5568999999999999999987 334899999999999999988754      466789999999987 44  4 48999


Q ss_pred             EEEEcc
Q 025428          233 LVMDKG  238 (253)
Q Consensus       233 ~Vi~~~  238 (253)
                      .|+++.
T Consensus       126 ~v~~~~  131 (235)
T 3ckk_A          126 KMFFLF  131 (235)
T ss_dssp             EEEEES
T ss_pred             EEEEeC
Confidence            998754

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.24  E-value=9.7e-12  Score=104.33  Aligned_cols=91  Identities=15%  Similarity=0.158  Sum_probs=72.9

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCc
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK  226 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~  226 (253)
                      .....++..+....++.+|||||||+|..+..+++. + ..+|+++|+++.+++.|+++++..++.+ ++++++|+.+..
T Consensus        44 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  123 (223)
T 3duw_A           44 PTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSL  123 (223)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence            334455555544457789999999999999999988 2 3499999999999999999999988875 999999997642


Q ss_pred             C------CCCccEEEEcccc
Q 025428          227 L------ERQFQLVMDKGTL  240 (253)
Q Consensus       227 ~------~~~fD~Vi~~~~l  240 (253)
                      .      .++||+|++....
T Consensus       124 ~~~~~~~~~~fD~v~~d~~~  143 (223)
T 3duw_A          124 QQIENEKYEPFDFIFIDADK  143 (223)
T ss_dssp             HHHHHTTCCCCSEEEECSCG
T ss_pred             HHHHhcCCCCcCEEEEcCCc
Confidence            2      1579999987653

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.23  E-value=9.9e-12  Score=106.12  Aligned_cols=76  Identities=13%  Similarity=0.126  Sum_probs=64.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC-CCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE-RQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~-~~fD~Vi~~~~  239 (253)
                      .++.+|||||||+|..+..+++++..+++|||+|+.|++.|+++....+. ++.++.+|+.+..  ++ ++||.|+...+
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~FD~i~~D~~  137 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILYDTY  137 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhcccccccCCceEEEeee
Confidence            47889999999999999999988556899999999999999999887764 7899999987653  33 78999986543

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.23  E-value=4.4e-11  Score=100.94  Aligned_cols=69  Identities=17%  Similarity=0.217  Sum_probs=60.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccC-CCcC--CCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL-DTKL--ERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~-~~~~--~~~fD~Vi~~  237 (253)
                      .++.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.++++     ..+++++++|+. .+++  +++||+|+++
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~~~~~~fD~v~~~  118 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN-----APHADVYEWNGKGELPAGLGAPFGLIVSR  118 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSCCTTCCCCEEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh-----CCCceEEEcchhhccCCcCCCCEEEEEeC
Confidence            4678999999999999999999965 999999999999999988     247999999994 4554  4789999986

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.23  E-value=2.8e-11  Score=109.19  Aligned_cols=82  Identities=23%  Similarity=0.208  Sum_probs=71.8

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDK  237 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~  237 (253)
                      ...++.+|||+|||+|.++..++..+  ..+++|+|+|+.|++.|++|++..|+.+++++++|+.+++.+ +.||+|+++
T Consensus       200 ~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~~~~~D~Ii~n  279 (354)
T 3tma_A          200 DARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRFFPEVDRILAN  279 (354)
T ss_dssp             TCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGTCCCCSEEEEC
T ss_pred             CCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccccCCCCEEEEC
Confidence            33577899999999999999999974  249999999999999999999999988899999999998765 679999998


Q ss_pred             cccce
Q 025428          238 GTLDA  242 (253)
Q Consensus       238 ~~l~~  242 (253)
                      ..+..
T Consensus       280 pPyg~  284 (354)
T 3tma_A          280 PPHGL  284 (354)
T ss_dssp             CCSCC
T ss_pred             CCCcC
Confidence            76543

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.22  E-value=2.5e-11  Score=107.53  Aligned_cols=86  Identities=23%  Similarity=0.348  Sum_probs=71.0

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CC
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQ  230 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~  230 (253)
                      ...+++.+.. .++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.+++++.  +..+++++++|+.+++++ .+
T Consensus        39 ~~~Iv~~l~~-~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~~~~  114 (295)
T 3gru_A           39 VNKAVESANL-TKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLNKLD  114 (295)
T ss_dssp             HHHHHHHTTC-CTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGGGSC
T ss_pred             HHHHHHhcCC-CCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCcccCC
Confidence            3344444432 467899999999999999999995 499999999999999999987  335899999999998776 57


Q ss_pred             ccEEEEccccc
Q 025428          231 FQLVMDKGTLD  241 (253)
Q Consensus       231 fD~Vi~~~~l~  241 (253)
                      ||+|+++..++
T Consensus       115 fD~Iv~NlPy~  125 (295)
T 3gru_A          115 FNKVVANLPYQ  125 (295)
T ss_dssp             CSEEEEECCGG
T ss_pred             ccEEEEeCccc
Confidence            99999987654

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.22  E-value=5.5e-12  Score=107.92  Aligned_cols=82  Identities=18%  Similarity=0.230  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-----------------------------C
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-----------------------------S  213 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-----------------------------~  213 (253)
                      .++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.+++++...+.                             .
T Consensus        55 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  134 (265)
T 2i62_A           55 VKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRR  134 (265)
T ss_dssp             CCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHH
T ss_pred             cCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhh
Confidence            45679999999999999999988666899999999999999998765431                             0


Q ss_pred             ce-EEEEeccCCCcC--C---CCccEEEEccccceec
Q 025428          214 CI-KFLVDDVLDTKL--E---RQFQLVMDKGTLDAIG  244 (253)
Q Consensus       214 ~i-~~~~~D~~~~~~--~---~~fD~Vi~~~~l~~i~  244 (253)
                      ++ .++++|+.+..+  +   ++||+|++..+||++.
T Consensus       135 ~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~  171 (265)
T 2i62_A          135 AIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAAC  171 (265)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHC
T ss_pred             hheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhc
Confidence            27 999999988643  3   6899999999999663

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.22  E-value=1.3e-11  Score=103.49  Aligned_cols=88  Identities=23%  Similarity=0.232  Sum_probs=71.0

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCc--
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK--  226 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~--  226 (253)
                      ...++..+....++.+|||+|||+|..+..++.. + ..+|+++|+++.+++.|+++++..++.+ ++++++|+.+..  
T Consensus        52 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  131 (225)
T 3tr6_A           52 QAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAE  131 (225)
T ss_dssp             HHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHH
Confidence            3344444444456789999999999999999987 2 4599999999999999999999998874 999999996652  


Q ss_pred             CC-----CCccEEEEccc
Q 025428          227 LE-----RQFQLVMDKGT  239 (253)
Q Consensus       227 ~~-----~~fD~Vi~~~~  239 (253)
                      ..     ++||+|++...
T Consensus       132 ~~~~~~~~~fD~v~~~~~  149 (225)
T 3tr6_A          132 LIHAGQAWQYDLIYIDAD  149 (225)
T ss_dssp             HHTTTCTTCEEEEEECSC
T ss_pred             hhhccCCCCccEEEECCC
Confidence            11     78999997654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.21  E-value=5.7e-11  Score=102.08  Aligned_cols=78  Identities=21%  Similarity=0.210  Sum_probs=71.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      ....+|||||||+|.++..+.  +..+++|+||++.|++.+++++..+|. +..+.++|....+++++||+|++.-++|+
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~-~~~~~v~D~~~~~~~~~~DvvLllk~lh~  180 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDW-DFTFALQDVLCAPPAEAGDLALIFKLLPL  180 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTC-EEEEEECCTTTSCCCCBCSEEEEESCHHH
T ss_pred             CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeecccCCCCCCcchHHHHHHHHH
Confidence            467799999999999999988  456999999999999999999988884 88999999999988899999999988888


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus       181 L  181 (253)
T 3frh_A          181 L  181 (253)
T ss_dssp             H
T ss_pred             h
Confidence            7

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.21  E-value=4.7e-11  Score=102.20  Aligned_cols=75  Identities=21%  Similarity=0.235  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhc--------CCCceEEEEeccCC-Cc--CC-C
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRD--------GFSCIKFLVDDVLD-TK--LE-R  229 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~--------g~~~i~~~~~D~~~-~~--~~-~  229 (253)
                      .++.+|||||||+|.++..++..+. .+|+|+|+|+.|++.++++++.+        ++.|++++++|+.+ ++  ++ +
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~  127 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKG  127 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhcccc
Confidence            3567999999999999999999854 38999999999999999998776        77799999999987 44  33 7


Q ss_pred             CccEEEEc
Q 025428          230 QFQLVMDK  237 (253)
Q Consensus       230 ~fD~Vi~~  237 (253)
                      ++|.|+.+
T Consensus       128 ~~d~v~~~  135 (246)
T 2vdv_E          128 QLSKMFFC  135 (246)
T ss_dssp             CEEEEEEE
T ss_pred             ccCEEEEE
Confidence            88988853

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.21  E-value=5e-11  Score=100.92  Aligned_cols=72  Identities=8%  Similarity=0.155  Sum_probs=62.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC----CcCCCCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD----TKLERQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~----~~~~~~fD~Vi~  236 (253)
                      .++.+|||+|||+|.++..+++. |..+|+|+|+|+.|++.++++++.+  .++.++++|+.+    .++.++||+|+.
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVDVIYE  149 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTSCCEEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCcccccccCccEEEEEE
Confidence            46789999999999999999988 5459999999999999999997655  589999999988    555578999993

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.21  E-value=2.4e-11  Score=111.95  Aligned_cols=80  Identities=13%  Similarity=0.169  Sum_probs=66.9

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHH-------HhcCC--CceEEEEeccCCCcCC---
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLA-------NRDGF--SCIKFLVDDVLDTKLE---  228 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~-------~~~g~--~~i~~~~~D~~~~~~~---  228 (253)
                      ..++.+|||||||+|.+++.++.. |+.+|+|||+|+.|++.|++++       +..|+  .+|+|+++|+.++++.   
T Consensus       171 l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~lp~~d~~  250 (438)
T 3uwp_A          171 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI  250 (438)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccCCcccccc
Confidence            367889999999999999999975 6656999999999999998864       33465  4799999999998764   


Q ss_pred             CCccEEEEccccc
Q 025428          229 RQFQLVMDKGTLD  241 (253)
Q Consensus       229 ~~fD~Vi~~~~l~  241 (253)
                      ..||+|+++.+++
T Consensus       251 ~~aDVVf~Nn~~F  263 (438)
T 3uwp_A          251 ANTSVIFVNNFAF  263 (438)
T ss_dssp             HTCSEEEECCTTC
T ss_pred             CCccEEEEccccc
Confidence            4799999987753

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.21  E-value=5.5e-11  Score=99.92  Aligned_cols=73  Identities=18%  Similarity=0.211  Sum_probs=60.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC----cCCCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT----KLERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~----~~~~~fD~Vi~~  237 (253)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.+.++++..  .|+.++++|+...    ++.++||+|+++
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~fD~V~~~  133 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKYSGIVEKVDLIYQD  133 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGTTTTCCCEEEEEEC
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhhcccccceeEEEEe
Confidence            46789999999999999999987 3348999999999988777766543  4789999999874    345899999987

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.21  E-value=1.9e-11  Score=105.03  Aligned_cols=89  Identities=13%  Similarity=0.148  Sum_probs=72.2

Q ss_pred             ccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCC-c
Q 025428          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT-K  226 (253)
Q Consensus       151 ~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~-~  226 (253)
                      ....++..+....++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.|+++++..|+. +++++++|+.+. +
T Consensus        50 ~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~  129 (248)
T 3tfw_A           50 NQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLE  129 (248)
T ss_dssp             HHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHH
Confidence            34445555544457789999999999999999987 2 459999999999999999999999987 699999999763 2


Q ss_pred             -C--CCCccEEEEccc
Q 025428          227 -L--ERQFQLVMDKGT  239 (253)
Q Consensus       227 -~--~~~fD~Vi~~~~  239 (253)
                       .  .++||+|++...
T Consensus       130 ~~~~~~~fD~V~~d~~  145 (248)
T 3tfw_A          130 SLGECPAFDLIFIDAD  145 (248)
T ss_dssp             TCCSCCCCSEEEECSC
T ss_pred             hcCCCCCeEEEEECCc
Confidence             1  248999997654

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.21  E-value=5.8e-11  Score=101.53  Aligned_cols=77  Identities=19%  Similarity=0.217  Sum_probs=67.8

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEcc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      ..++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|+++++..++.+ ++++++|+.+...+++||+|+++.
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~  170 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGIEEENVDHVILDL  170 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCCCCCSEEEEEECS
T ss_pred             CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhccCCCCcCEEEECC
Confidence            357889999999999999999998 4 4599999999999999999999988876 999999999764457899999853

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.21  E-value=1.9e-11  Score=109.99  Aligned_cols=84  Identities=17%  Similarity=0.214  Sum_probs=70.2

Q ss_pred             HHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc--eEEEEeccCCCcC-----
Q 025428          155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKL-----  227 (253)
Q Consensus       155 l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~--i~~~~~D~~~~~~-----  227 (253)
                      +.+.+....++.+|||+|||+|.++..++..|. +|+++|+|+.|++.|++|++.+++.+  ++++++|+.++..     
T Consensus       144 l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~  222 (332)
T 2igt_A          144 LKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERR  222 (332)
T ss_dssp             HHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhc
Confidence            344443223567999999999999999999987 99999999999999999999999874  9999999987642     


Q ss_pred             CCCccEEEEccc
Q 025428          228 ERQFQLVMDKGT  239 (253)
Q Consensus       228 ~~~fD~Vi~~~~  239 (253)
                      .++||+|+++..
T Consensus       223 ~~~fD~Ii~dPP  234 (332)
T 2igt_A          223 GSTYDIILTDPP  234 (332)
T ss_dssp             TCCBSEEEECCC
T ss_pred             CCCceEEEECCc
Confidence            468999999654

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.21  E-value=1.9e-11  Score=103.68  Aligned_cols=89  Identities=20%  Similarity=0.291  Sum_probs=71.3

Q ss_pred             ccchHHHHhccCCCCC---EEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccC
Q 025428          151 LKSEPVEENDKYLSSW---SVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVL  223 (253)
Q Consensus       151 ~~~~l~~~l~~~~~~~---~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~  223 (253)
                      ....++..+....+..   +|||||||+|..+..+++. + ..+|+++|+|+++++.|+++++..|+.  +++++++|+.
T Consensus        40 ~~~~~l~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~  119 (221)
T 3dr5_A           40 MTGQLLTTLAATTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPL  119 (221)
T ss_dssp             HHHHHHHHHHHHSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHH
T ss_pred             HHHHHHHHHHHhhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHH
Confidence            3444555554443444   9999999999999999985 2 349999999999999999999999886  6999999987


Q ss_pred             CCc--C-CCCccEEEEccc
Q 025428          224 DTK--L-ERQFQLVMDKGT  239 (253)
Q Consensus       224 ~~~--~-~~~fD~Vi~~~~  239 (253)
                      +..  + +++||+|++...
T Consensus       120 ~~l~~~~~~~fD~V~~d~~  138 (221)
T 3dr5_A          120 DVMSRLANDSYQLVFGQVS  138 (221)
T ss_dssp             HHGGGSCTTCEEEEEECCC
T ss_pred             HHHHHhcCCCcCeEEEcCc
Confidence            753  3 479999998654

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.21  E-value=2.1e-11  Score=101.47  Aligned_cols=72  Identities=24%  Similarity=0.387  Sum_probs=62.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC---cC--CCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KL--ERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~---~~--~~~fD~Vi~~  237 (253)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.++++      .++.++++|+.++   ++  ..+||+|++.
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~  123 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKVPVGKDYDLICAN  123 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCSCCCCCEEEEEEE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh------cccccchhhHHhhcccccccCCCccEEEEC
Confidence            3568999999999999999999966 999999999999999987      3677888888776   33  3569999999


Q ss_pred             cccc
Q 025428          238 GTLD  241 (253)
Q Consensus       238 ~~l~  241 (253)
                      .++|
T Consensus       124 ~~l~  127 (227)
T 3e8s_A          124 FALL  127 (227)
T ss_dssp             SCCC
T ss_pred             chhh
Confidence            9988

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=99.20  E-value=6.2e-11  Score=103.78  Aligned_cols=81  Identities=21%  Similarity=0.214  Sum_probs=63.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeC-CHHHHHHHHHHH-----HhcCCC-----ceEEEEeccCCCc-----
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY-SEDAINLAQSLA-----NRDGFS-----CIKFLVDDVLDTK-----  226 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~-s~~~l~~ar~~~-----~~~g~~-----~i~~~~~D~~~~~-----  226 (253)
                      .++.+|||+|||+|.++..+++.|..+|+|+|+ |+.|++.|++++     +.+++.     +++++..|+.+..     
T Consensus        78 ~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           78 IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            467799999999999999999987669999999 899999999999     555553     6888877765531     


Q ss_pred             --CCCCccEEEEcccccee
Q 025428          227 --LERQFQLVMDKGTLDAI  243 (253)
Q Consensus       227 --~~~~fD~Vi~~~~l~~i  243 (253)
                        ..++||+|++..++++.
T Consensus       158 ~~~~~~fD~Ii~~dvl~~~  176 (281)
T 3bzb_A          158 CTGLQRFQVVLLADLLSFH  176 (281)
T ss_dssp             HHSCSSBSEEEEESCCSCG
T ss_pred             hccCCCCCEEEEeCcccCh
Confidence              24789999998887764

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.20  E-value=4.3e-11  Score=107.69  Aligned_cols=89  Identities=17%  Similarity=0.253  Sum_probs=74.1

Q ss_pred             ccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCC
Q 025428          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER  229 (253)
Q Consensus       151 ~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~  229 (253)
                      ....+++.+.. ..+.+|||+|||+|.++..+++.+. .+|+|+|+|+.|++.+++++..+++ +++++.+|+.+.. ++
T Consensus       184 ~~~~ll~~l~~-~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~-~~~~~~~d~~~~~-~~  260 (343)
T 2pjd_A          184 GSQLLLSTLTP-HTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGV-EGEVFASNVFSEV-KG  260 (343)
T ss_dssp             HHHHHHHHSCT-TCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTC-CCEEEECSTTTTC-CS
T ss_pred             HHHHHHHhcCc-CCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCEEEEccccccc-cC
Confidence            34555665533 3467999999999999999999854 3899999999999999999988887 5788999998754 67


Q ss_pred             CccEEEEccccce
Q 025428          230 QFQLVMDKGTLDA  242 (253)
Q Consensus       230 ~fD~Vi~~~~l~~  242 (253)
                      +||+|+++.++|+
T Consensus       261 ~fD~Iv~~~~~~~  273 (343)
T 2pjd_A          261 RFDMIISNPPFHD  273 (343)
T ss_dssp             CEEEEEECCCCCS
T ss_pred             CeeEEEECCCccc
Confidence            8999999999886

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.20  E-value=1.9e-11  Score=111.90  Aligned_cols=78  Identities=14%  Similarity=0.132  Sum_probs=68.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCcC-----CCCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL-----ERQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~~-----~~~fD~Vi  235 (253)
                      .++.+|||+|||+|.++..++..|+.+|+|+|+|+.|++.|++|++.+++.  +++++++|+.+...     ..+||+|+
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii  290 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  290 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHHhCCCccEEE
Confidence            567899999999999999999987779999999999999999999999987  89999999977421     35899999


Q ss_pred             Ecccc
Q 025428          236 DKGTL  240 (253)
Q Consensus       236 ~~~~l  240 (253)
                      ++...
T Consensus       291 ~DPP~  295 (385)
T 2b78_A          291 IDPPS  295 (385)
T ss_dssp             ECCCC
T ss_pred             ECCCC
Confidence            86544

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.20  E-value=5.6e-11  Score=102.23  Aligned_cols=73  Identities=23%  Similarity=0.347  Sum_probs=63.8

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~  242 (253)
                      ++.+|||||||+|.++..+++.|. +++|+|+|+.|++.|+++..    .+  ++++|+.+++++ ++||+|++..+++|
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~~~~~fD~v~~~~~~~~  126 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPFPSGAFEAVLALGDVLS  126 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCSCTTCEEEEEECSSHHH
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCCCCCCEEEEEEcchhhh
Confidence            567999999999999999999966 89999999999999998854    12  899999998875 78999999887766


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus       127 ~  127 (260)
T 2avn_A          127 Y  127 (260)
T ss_dssp             H
T ss_pred             c
Confidence            5

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.19  E-value=3.8e-11  Score=104.74  Aligned_cols=87  Identities=17%  Similarity=0.057  Sum_probs=72.9

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---  227 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---  227 (253)
                      +.+...+....++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.+++++++.|+.+++++++|+.+++.   
T Consensus        72 s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~  151 (274)
T 3ajd_A           72 SMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLL  151 (274)
T ss_dssp             GGHHHHHHCCCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhh
Confidence            334444445567889999999999999999985  435999999999999999999999998899999999988754   


Q ss_pred             --CCCccEEEEccc
Q 025428          228 --ERQFQLVMDKGT  239 (253)
Q Consensus       228 --~~~fD~Vi~~~~  239 (253)
                        .++||+|+++..
T Consensus       152 ~~~~~fD~Vl~d~P  165 (274)
T 3ajd_A          152 KNEIFFDKILLDAP  165 (274)
T ss_dssp             HTTCCEEEEEEEEC
T ss_pred             hccccCCEEEEcCC
Confidence              578999998743

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.19  E-value=4.2e-11  Score=106.72  Aligned_cols=89  Identities=12%  Similarity=0.025  Sum_probs=74.1

Q ss_pred             ccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-
Q 025428          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-  227 (253)
Q Consensus       151 ~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-  227 (253)
                      ....+...+....++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.+++++++.|+.+++++++|+.+++. 
T Consensus       105 ~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~~~  184 (315)
T 1ixk_A          105 ASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGEL  184 (315)
T ss_dssp             HHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGGG
T ss_pred             HHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcccc
Confidence            33444444455578889999999999999999986  234899999999999999999999998899999999988764 


Q ss_pred             CCCccEEEEccc
Q 025428          228 ERQFQLVMDKGT  239 (253)
Q Consensus       228 ~~~fD~Vi~~~~  239 (253)
                      +++||+|+++..
T Consensus       185 ~~~fD~Il~d~P  196 (315)
T 1ixk_A          185 NVEFDKILLDAP  196 (315)
T ss_dssp             CCCEEEEEEECC
T ss_pred             cccCCEEEEeCC
Confidence            578999998643

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.18  E-value=1.7e-11  Score=105.01  Aligned_cols=80  Identities=18%  Similarity=0.242  Sum_probs=65.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHhc---CCCc-----------------------
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRD---GFSC-----------------------  214 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~---g~~~v~gvD~s~~~l~~ar~~~~~~---g~~~-----------------------  214 (253)
                      ++.+|||+|||+|.++..++..   +..+|+|+|+|+.|++.|++++...   ++.+                       
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  130 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence            4579999999999999999876   2338999999999999999988765   4432                       


Q ss_pred             ---eE-------------EEEeccCCCcC-----C-CCccEEEEcccccee
Q 025428          215 ---IK-------------FLVDDVLDTKL-----E-RQFQLVMDKGTLDAI  243 (253)
Q Consensus       215 ---i~-------------~~~~D~~~~~~-----~-~~fD~Vi~~~~l~~i  243 (253)
                         ++             ++++|+.+...     . ++||+|+++..++..
T Consensus       131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~  181 (250)
T 1o9g_A          131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGER  181 (250)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGS
T ss_pred             hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeecc
Confidence               66             99999988642     4 589999998776654

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.18  E-value=6.5e-11  Score=98.67  Aligned_cols=73  Identities=23%  Similarity=0.338  Sum_probs=63.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC--CcCC-CCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD--TKLE-RQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~--~~~~-~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||+|.++..+++.| .+++|+|+|+.+++.++++.       .+++++|+.+  .+++ ++||+|++..+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~~~~~~~~~~fD~v~~~~~  102 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIETMDMPYEEEQFDCVIFGDV  102 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTTCCCCSCTTCEEEEEEESC
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhhcCCCCCCCccCEEEECCh
Confidence            367899999999999999999996 59999999999999998753       3789999987  4444 78999999999


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      ++|+
T Consensus       103 l~~~  106 (230)
T 3cc8_A          103 LEHL  106 (230)
T ss_dssp             GGGS
T ss_pred             hhhc
Confidence            9987

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.17  E-value=3.7e-11  Score=110.23  Aligned_cols=81  Identities=20%  Similarity=0.281  Sum_probs=70.4

Q ss_pred             hccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-C-ceEEEEeccCCCcC-----CCCc
Q 025428          159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-S-CIKFLVDDVLDTKL-----ERQF  231 (253)
Q Consensus       159 l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~-~i~~~~~D~~~~~~-----~~~f  231 (253)
                      +....++.+|||+|||+|.++..++..|+.+|+|+|+|+.+++.|++|++.+++ . +++++++|+.+...     ..+|
T Consensus       215 l~~~~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~~~~~~~~~~~~f  294 (396)
T 3c0k_A          215 TRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKF  294 (396)
T ss_dssp             HHHHCTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HHHhhCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHHhcCCCC
Confidence            333357789999999999999999999877999999999999999999999998 7 89999999987632     3689


Q ss_pred             cEEEEccc
Q 025428          232 QLVMDKGT  239 (253)
Q Consensus       232 D~Vi~~~~  239 (253)
                      |+|+++..
T Consensus       295 D~Ii~dpP  302 (396)
T 3c0k_A          295 DVIVMDPP  302 (396)
T ss_dssp             EEEEECCS
T ss_pred             CEEEECCC
Confidence            99999753

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.17  E-value=5e-11  Score=104.45  Aligned_cols=80  Identities=18%  Similarity=0.206  Sum_probs=59.4

Q ss_pred             CCCEEEEEcCCCcHHHHH----HHhc-CCCcE--EEEeCCHHHHHHHHHHHHhc-CCCceEE--EEeccCCCc------C
Q 025428          164 SSWSVLDIGTGNGLLLQE----LSKQ-GFSDL--TGVDYSEDAINLAQSLANRD-GFSCIKF--LVDDVLDTK------L  227 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~----la~~-g~~~v--~gvD~s~~~l~~ar~~~~~~-g~~~i~~--~~~D~~~~~------~  227 (253)
                      ++.+|||||||+|.++..    ++.. +...|  +|+|+|++|++.|++++... ++.++.+  .++++.+++      +
T Consensus        52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  131 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK  131 (292)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence            567999999999976543    3333 22233  99999999999999998654 5556554  556665443      2


Q ss_pred             -CCCccEEEEcccccee
Q 025428          228 -ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       228 -~~~fD~Vi~~~~l~~i  243 (253)
                       +++||+|++..+|||+
T Consensus       132 ~~~~fD~V~~~~~l~~~  148 (292)
T 2aot_A          132 ELQKWDFIHMIQMLYYV  148 (292)
T ss_dssp             CCCCEEEEEEESCGGGC
T ss_pred             CCCceeEEEEeeeeeec
Confidence             4789999999999998

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.17  E-value=1e-10  Score=101.83  Aligned_cols=75  Identities=19%  Similarity=0.267  Sum_probs=65.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhc-CCCceEEEEeccCCCcCCCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKLERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~-g~~~i~~~~~D~~~~~~~~~fD~Vi~~  237 (253)
                      .++.+|||+|||+|.++..+++.  +..+|+|+|+++.+++.|+++++.+ |..+++++++|+.+...+++||+|+++
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~fD~Vi~~  186 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD  186 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhccCcCCCccEEEEc
Confidence            56789999999999999999987  2349999999999999999999888 877899999999884334789999983

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=99.17  E-value=1.1e-11  Score=107.67  Aligned_cols=81  Identities=16%  Similarity=0.112  Sum_probs=68.2

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCH-------HHHHHHHHHHHhcCCCc-eEEEEeccCCCc--CC--
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE-------DAINLAQSLANRDGFSC-IKFLVDDVLDTK--LE--  228 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~-------~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~--~~--  228 (253)
                      ...++.+|||+|||+|.++..++..|. +|+|+|+|+       .+++.|+++++.+++.+ ++++++|+.++.  ++  
T Consensus        80 ~~~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~  158 (258)
T 2r6z_A           80 NHTAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKT  158 (258)
T ss_dssp             TGGGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHH
T ss_pred             CcCCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhcc
Confidence            334568999999999999999999965 899999999       99999999988877765 999999998752  23  


Q ss_pred             -CCccEEEEccccce
Q 025428          229 -RQFQLVMDKGTLDA  242 (253)
Q Consensus       229 -~~fD~Vi~~~~l~~  242 (253)
                       ++||+|+++..+++
T Consensus       159 ~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          159 QGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HCCCSEEEECCCC--
T ss_pred             CCCccEEEECCCCCC
Confidence             68999999887765

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.17  E-value=8.9e-11  Score=104.31  Aligned_cols=80  Identities=19%  Similarity=0.369  Sum_probs=71.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .+..+|||+|||+|.++..+++. +..+++++|++ .+++.|++++...++. +++++++|+.+.++++.||+|++..++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~v~~~~~l  242 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVDYGNDYDLVLLPNFL  242 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSCCCSCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCcEEEEcchh
Confidence            45689999999999999999988 23499999999 9999999999888876 599999999987776669999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      |++
T Consensus       243 ~~~  245 (335)
T 2r3s_A          243 HHF  245 (335)
T ss_dssp             GGS
T ss_pred             ccC
Confidence            987

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.16  E-value=4.1e-11  Score=109.04  Aligned_cols=103  Identities=11%  Similarity=0.118  Sum_probs=78.8

Q ss_pred             cceeecCCCcCCccccccchHHHHhccC--CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428          135 LCISISQGHMLNHVEDLKSEPVEENDKY--LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF  212 (253)
Q Consensus       135 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~--~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~  212 (253)
                      +.+.+.++.+.+........+...+...  ..+.+|||+|||+|.++..+++. +.+|+|+|+|+.|++.|++|++.+|+
T Consensus       182 ~~~~~~~~~F~Q~n~~~~~~l~~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~  260 (369)
T 3bt7_A          182 MIYRQVENSFTQPNAAMNIQMLEWALDVTKGSKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHI  260 (369)
T ss_dssp             CEEEEETTSCCCSBHHHHHHHHHHHHHHTTTCCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTC
T ss_pred             EEEEECCCCeecCCHHHHHHHHHHHHHHhhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCC
Confidence            3345556666665555445555444332  23578999999999999999986 56999999999999999999999999


Q ss_pred             CceEEEEeccCCCc--CC---------------CCccEEEEcc
Q 025428          213 SCIKFLVDDVLDTK--LE---------------RQFQLVMDKG  238 (253)
Q Consensus       213 ~~i~~~~~D~~~~~--~~---------------~~fD~Vi~~~  238 (253)
                      .+++|+++|+.+..  ..               .+||+|+.+.
T Consensus       261 ~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dP  303 (369)
T 3bt7_A          261 DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDP  303 (369)
T ss_dssp             CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECC
T ss_pred             CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECc
Confidence            89999999997752  11               2799998754

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.16  E-value=5.3e-11  Score=109.09  Aligned_cols=83  Identities=24%  Similarity=0.318  Sum_probs=71.1

Q ss_pred             HHhccCC-CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC-----CC
Q 025428          157 EENDKYL-SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-----ER  229 (253)
Q Consensus       157 ~~l~~~~-~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~-----~~  229 (253)
                      .++.... ++.+|||+|||+|.++..++..|+.+|+|+|+|+.+++.|+++++.+++. +++++++|+.+...     .+
T Consensus       209 ~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~~~~~~~~~  288 (396)
T 2as0_A          209 LALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKGE  288 (396)
T ss_dssp             HHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTTC
T ss_pred             HHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHHHHHHhhCC
Confidence            3333444 77899999999999999999987779999999999999999999999997 79999999987632     46


Q ss_pred             CccEEEEccc
Q 025428          230 QFQLVMDKGT  239 (253)
Q Consensus       230 ~fD~Vi~~~~  239 (253)
                      +||+|+++..
T Consensus       289 ~fD~Vi~dpP  298 (396)
T 2as0_A          289 KFDIVVLDPP  298 (396)
T ss_dssp             CEEEEEECCC
T ss_pred             CCCEEEECCC
Confidence            8999998643

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.16  E-value=1.1e-10  Score=105.60  Aligned_cols=79  Identities=20%  Similarity=0.168  Sum_probs=69.8

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCC--cCCCCccEEEEccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT--KLERQFQLVMDKGT  239 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~--~~~~~fD~Vi~~~~  239 (253)
                      ...+|||||||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++++.+|+.+.  +++++||+|++..+
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p~~~D~v~~~~v  257 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFPTGFDAVWMSQF  257 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCCCCCSEEEEESC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCCCCcCEEEEech
Confidence            5679999999999999999986 2348999999 99999999999887774 699999999986  45688999999999


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      ||++
T Consensus       258 lh~~  261 (363)
T 3dp7_A          258 LDCF  261 (363)
T ss_dssp             STTS
T ss_pred             hhhC
Confidence            9976

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.15  E-value=2e-10  Score=98.01  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=67.1

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhc-CCCceEEEEeccCCCcCC-CCccEEEEc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKLE-RQFQLVMDK  237 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~-g~~~i~~~~~D~~~~~~~-~~fD~Vi~~  237 (253)
                      ..++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|+++++.. |..+++++++|+.+.+++ ++||+|+++
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~~~~~~D~v~~~  173 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAELEEAAYDGVALD  173 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCCCTTCEEEEEEE
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCCCCCCcCEEEEC
Confidence            357789999999999999999988 4 459999999999999999999887 766899999999988555 789999984

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=99.15  E-value=1.4e-10  Score=104.18  Aligned_cols=72  Identities=18%  Similarity=0.130  Sum_probs=65.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      .++.+|||+|||+|.++.. ++ +..+|+|+|+|+.+++.|++|++.+++. +++++++|+.+..  ++||+|+++.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~--~~fD~Vi~dp  266 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD--VKGNRVIMNL  266 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC--CCEEEEEECC
T ss_pred             CCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc--CCCcEEEECC
Confidence            4778999999999999999 87 5669999999999999999999999984 7999999999876  8899999863

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=99.15  E-value=1e-10  Score=106.44  Aligned_cols=78  Identities=17%  Similarity=0.229  Sum_probs=69.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC-CcC--CCCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-TKL--ERQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~-~~~--~~~fD~Vi~~~  238 (253)
                      .++.+|||+| |+|.++..++..+. .+|+|+|+|+.|++.|+++++.+|+.+++++++|+.+ ++.  .++||+|+++.
T Consensus       171 ~~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~  249 (373)
T 2qm3_A          171 LENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDP  249 (373)
T ss_dssp             STTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECC
T ss_pred             CCCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECC
Confidence            3578999999 99999999998865 6999999999999999999999888789999999998 553  36899999987


Q ss_pred             ccc
Q 025428          239 TLD  241 (253)
Q Consensus       239 ~l~  241 (253)
                      +++
T Consensus       250 p~~  252 (373)
T 2qm3_A          250 PET  252 (373)
T ss_dssp             CSS
T ss_pred             CCc
Confidence            664

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=99.15  E-value=5e-11  Score=102.59  Aligned_cols=89  Identities=12%  Similarity=0.203  Sum_probs=71.9

Q ss_pred             ccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCC-c
Q 025428          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT-K  226 (253)
Q Consensus       151 ~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~-~  226 (253)
                      ....++..+....+..+|||||||+|..+..+++. + ..+|+++|+|+.+++.|+++++..|+. +++++++|+.+. +
T Consensus        66 ~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~  145 (247)
T 1sui_A           66 DEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLD  145 (247)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHH
T ss_pred             HHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHH
Confidence            34445555544456789999999999999999987 2 349999999999999999999998885 699999999764 2


Q ss_pred             -C------CCCccEEEEccc
Q 025428          227 -L------ERQFQLVMDKGT  239 (253)
Q Consensus       227 -~------~~~fD~Vi~~~~  239 (253)
                       +      .++||+|++...
T Consensus       146 ~l~~~~~~~~~fD~V~~d~~  165 (247)
T 1sui_A          146 EMIKDEKNHGSYDFIFVDAD  165 (247)
T ss_dssp             HHHHSGGGTTCBSEEEECSC
T ss_pred             HHHhccCCCCCEEEEEEcCc
Confidence             2      478999998653

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.14  E-value=3.8e-11  Score=101.99  Aligned_cols=76  Identities=16%  Similarity=0.211  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCC-HHHHHHH---HHHHHhcCCCceEEEEeccCCCcC--CCCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYS-EDAINLA---QSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s-~~~l~~a---r~~~~~~g~~~i~~~~~D~~~~~~--~~~fD~Vi  235 (253)
                      .++.+|||||||+|.++..+++. ...+|+|+|+| +.|++.|   ++++...++.++.++++|+.+++.  .+.+|.|.
T Consensus        23 ~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~v~~i~  102 (225)
T 3p2e_A           23 QFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNIADSIS  102 (225)
T ss_dssp             TCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTCEEEEE
T ss_pred             CCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCeEEEEE
Confidence            36779999999999999999965 23389999999 7777777   888888888899999999998853  24556665


Q ss_pred             Ecc
Q 025428          236 DKG  238 (253)
Q Consensus       236 ~~~  238 (253)
                      ++.
T Consensus       103 ~~~  105 (225)
T 3p2e_A          103 ILF  105 (225)
T ss_dssp             EES
T ss_pred             EeC
Confidence            544

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=99.14  E-value=1.8e-10  Score=104.03  Aligned_cols=79  Identities=20%  Similarity=0.193  Sum_probs=69.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++.. ..+++++|+ +.+++.|++++...++. +++++++|+.+ +++..||+|++..++
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~v~~~~vl  258 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK-PLPVTADVVLLSFVL  258 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSCCEEEEEEESCG
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-cCCCCCCEEEEeccc
Confidence            467899999999999999999883 338999999 99999999999888876 79999999986 345559999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      |++
T Consensus       259 ~~~  261 (374)
T 1qzz_A          259 LNW  261 (374)
T ss_dssp             GGS
T ss_pred             cCC
Confidence            986

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.14  E-value=4e-11  Score=104.71  Aligned_cols=80  Identities=21%  Similarity=0.224  Sum_probs=61.3

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc-----------------CC-------------C
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-----------------GF-------------S  213 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~-----------------g~-------------~  213 (253)
                      ++.+|||||||+|.+...++..+..+|+|+|+|+.|++.|+++++..                 +.             .
T Consensus        71 ~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  150 (289)
T 2g72_A           71 SGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRAR  150 (289)
T ss_dssp             CCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHH
T ss_pred             CCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHhh
Confidence            67899999999999665555543459999999999999999876431                 10             0


Q ss_pred             ceEEEEeccCC-CcC------CCCccEEEEcccccee
Q 025428          214 CIKFLVDDVLD-TKL------ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       214 ~i~~~~~D~~~-~~~------~~~fD~Vi~~~~l~~i  243 (253)
                      .++++++|+.+ +++      +++||+|+++.+||++
T Consensus       151 ~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~  187 (289)
T 2g72_A          151 VKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAV  187 (289)
T ss_dssp             EEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHH
T ss_pred             hceEEecccCCCCCccccccCCCCCCEEEehhhhhhh
Confidence            15678889987 443      2569999999999996

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=99.14  E-value=1.5e-10  Score=103.77  Aligned_cols=78  Identities=17%  Similarity=0.242  Sum_probs=70.0

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc--CCCCccEEEEcccc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--LERQFQLVMDKGTL  240 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~--~~~~fD~Vi~~~~l  240 (253)
                      +.+|||||||+|.++..+++. +..+++++|+ +.+++.+++++...++. +++++.+|+.+.+  +++.||+|++..+|
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl  258 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL  258 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence            789999999999999999987 3348999999 88999999999888875 5999999999987  66789999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      |++
T Consensus       259 h~~  261 (352)
T 3mcz_A          259 HYF  261 (352)
T ss_dssp             GGS
T ss_pred             ccC
Confidence            987

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.14  E-value=7.6e-11  Score=98.76  Aligned_cols=68  Identities=21%  Similarity=0.267  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~  242 (253)
                      ++.+|||+|||+|.++..++..     +|+|+|+.|++.++++       +++++++|+.+++++ ++||+|++..++++
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~~~~~fD~v~~~~~l~~  114 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTICF  114 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGGG
T ss_pred             CCCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-------CCEEEEcccccCCCCCCCeeEEEEcchHhh
Confidence            4789999999999999988755     9999999999999986       678999999988765 78999999999998


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus       115 ~  115 (219)
T 1vlm_A          115 V  115 (219)
T ss_dssp             S
T ss_pred             c
Confidence            7

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.14  E-value=9.8e-11  Score=99.01  Aligned_cols=78  Identities=18%  Similarity=0.250  Sum_probs=67.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCC-c-C--CCCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT-K-L--ERQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~-~-~--~~~fD~Vi~  236 (253)
                      .++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++...++. +++++++|+.+. + .  +++||+|++
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~  132 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI  132 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence            467899999999999999999882 349999999999999999999988885 599999999875 2 2  478999998


Q ss_pred             cccc
Q 025428          237 KGTL  240 (253)
Q Consensus       237 ~~~l  240 (253)
                      +...
T Consensus       133 ~~~~  136 (233)
T 2gpy_A          133 DAAK  136 (233)
T ss_dssp             EGGG
T ss_pred             CCCH
Confidence            7764

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.13  E-value=1.9e-10  Score=100.47  Aligned_cols=78  Identities=18%  Similarity=0.198  Sum_probs=64.6

Q ss_pred             CCCEEEEEcCCC---cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----------CC
Q 025428          164 SSWSVLDIGTGN---GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----------LE  228 (253)
Q Consensus       164 ~~~~VLDiGcGt---G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----------~~  228 (253)
                      ...+|||||||+   |.++..+.+. ...+|+++|+|+.||+.|++++...  .+++++++|+.+..           ++
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~--~~v~~~~~D~~~~~~~~~~~~~~~~~d  154 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKD--PNTAVFTADVRDPEYILNHPDVRRMID  154 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTC--TTEEEEECCTTCHHHHHHSHHHHHHCC
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCC--CCeEEEEeeCCCchhhhccchhhccCC
Confidence            447999999999   9988777665 2349999999999999999988532  47999999998642           23


Q ss_pred             -CCccEEEEcccccee
Q 025428          229 -RQFQLVMDKGTLDAI  243 (253)
Q Consensus       229 -~~fD~Vi~~~~l~~i  243 (253)
                       .+||+|++..+|||+
T Consensus       155 ~~~~d~v~~~~vlh~~  170 (274)
T 2qe6_A          155 FSRPAAIMLVGMLHYL  170 (274)
T ss_dssp             TTSCCEEEETTTGGGS
T ss_pred             CCCCEEEEEechhhhC
Confidence             589999999999998

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=99.13  E-value=7e-11  Score=102.57  Aligned_cols=80  Identities=14%  Similarity=0.120  Sum_probs=73.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      ....+|||||||+|-++..++.. +..+++++|+++.|++.+++++..+|+ +..+.+.|....+++++||+|++.-++|
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~-~~~~~v~D~~~~~p~~~~DvaL~lkti~  209 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNV-PHRTNVADLLEDRLDEPADVTLLLKTLP  209 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTC-CEEEEECCTTTSCCCSCCSEEEETTCHH
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCC-CceEEEeeecccCCCCCcchHHHHHHHH
Confidence            45679999999999999999887 556999999999999999999999998 5899999999988889999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ++
T Consensus       210 ~L  211 (281)
T 3lcv_B          210 CL  211 (281)
T ss_dssp             HH
T ss_pred             Hh
Confidence            87

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=99.12  E-value=3.3e-10  Score=100.87  Aligned_cols=90  Identities=16%  Similarity=0.151  Sum_probs=74.4

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~  227 (253)
                      +..+.+...+..+.++.+|||+|||+|..+..++..  +..+|+++|+++.+++.+++++++.|+.+++++++|+.++..
T Consensus        88 d~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~  167 (309)
T 2b9e_A           88 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP  167 (309)
T ss_dssp             CTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT
T ss_pred             CHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCc
Confidence            344445555555678899999999999999999986  335899999999999999999999999899999999988753


Q ss_pred             C----CCccEEEEccc
Q 025428          228 E----RQFQLVMDKGT  239 (253)
Q Consensus       228 ~----~~fD~Vi~~~~  239 (253)
                      .    .+||.|+++..
T Consensus       168 ~~~~~~~fD~Vl~D~P  183 (309)
T 2b9e_A          168 SDPRYHEVHYILLDPS  183 (309)
T ss_dssp             TCGGGTTEEEEEECCC
T ss_pred             cccccCCCCEEEEcCC
Confidence            2    57999998643

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.12  E-value=1.7e-10  Score=100.06  Aligned_cols=81  Identities=20%  Similarity=0.277  Sum_probs=65.4

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-----
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-----  228 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-----  228 (253)
                      .+++.+.. .++.+|||||||+|.++..+++.+ .+|+|+|+++.|++.+++++..  ..+++++++|+.+++++     
T Consensus        20 ~iv~~~~~-~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~D~~~~~~~~~~~~   95 (255)
T 3tqs_A           20 KIVSAIHP-QKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQ--QKNITIYQNDALQFDFSSVKTD   95 (255)
T ss_dssp             HHHHHHCC-CTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTT--CTTEEEEESCTTTCCGGGSCCS
T ss_pred             HHHHhcCC-CCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhh--CCCcEEEEcchHhCCHHHhccC
Confidence            34444432 467899999999999999999996 5999999999999999999865  35899999999998753     


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      ++|| |++|-.
T Consensus        96 ~~~~-vv~NlP  105 (255)
T 3tqs_A           96 KPLR-VVGNLP  105 (255)
T ss_dssp             SCEE-EEEECC
T ss_pred             CCeE-EEecCC
Confidence            4688 666543

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=99.12  E-value=8.7e-11  Score=99.91  Aligned_cols=86  Identities=19%  Similarity=0.200  Sum_probs=69.2

Q ss_pred             HHHhccCCCCCEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCC-c-C---
Q 025428          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT-K-L---  227 (253)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~-~-~---  227 (253)
                      +..+....++.+|||||||+|..+..+++..  ..+|+++|+++.+++.|++++...|+.+ ++++++|+.+. + +   
T Consensus        52 l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~  131 (239)
T 2hnk_A           52 LNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDS  131 (239)
T ss_dssp             HHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHC
T ss_pred             HHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhh
Confidence            3333333567899999999999999999882  3599999999999999999999888865 99999998663 1 1   


Q ss_pred             ------------C-CCccEEEEccccc
Q 025428          228 ------------E-RQFQLVMDKGTLD  241 (253)
Q Consensus       228 ------------~-~~fD~Vi~~~~l~  241 (253)
                                  + ++||+|++.....
T Consensus       132 ~~~~~~~~~f~~~~~~fD~I~~~~~~~  158 (239)
T 2hnk_A          132 KSAPSWASDFAFGPSSIDLFFLDADKE  158 (239)
T ss_dssp             SSCCGGGTTTCCSTTCEEEEEECSCGG
T ss_pred             cccccccccccCCCCCcCEEEEeCCHH
Confidence                        2 6899999876543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.12  E-value=7.4e-11  Score=98.22  Aligned_cols=86  Identities=14%  Similarity=0.145  Sum_probs=68.8

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCC-c-
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT-K-  226 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~-~-  226 (253)
                      ...++..+....+..+|||+|||+|..+..+++. + ..+|+++|+|+.+++.|+++++..++. +++++++|+.+. + 
T Consensus        44 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~  123 (210)
T 3c3p_A           44 TGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAG  123 (210)
T ss_dssp             HHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTT
T ss_pred             HHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhcc
Confidence            3444444444346789999999999999999987 2 349999999999999999999888876 599999999764 2 


Q ss_pred             CCCCccEEEEcc
Q 025428          227 LERQFQLVMDKG  238 (253)
Q Consensus       227 ~~~~fD~Vi~~~  238 (253)
                      .++ ||+|+++.
T Consensus       124 ~~~-fD~v~~~~  134 (210)
T 3c3p_A          124 QRD-IDILFMDC  134 (210)
T ss_dssp             CCS-EEEEEEET
T ss_pred             CCC-CCEEEEcC
Confidence            236 99999864

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.12  E-value=2.9e-10  Score=95.55  Aligned_cols=75  Identities=16%  Similarity=0.271  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----CCCCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----~~~~fD~Vi~  236 (253)
                      .++.+|||+|||+|.++..+++. | ..+|+|+|+|+.|++.++++++..  .+++++++|+.+..    ++++||+|++
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~~~~~~~D~v~~  149 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhhcccCCceEEEE
Confidence            46789999999999999999987 4 259999999999999999988765  58999999998842    3468999997


Q ss_pred             ccc
Q 025428          237 KGT  239 (253)
Q Consensus       237 ~~~  239 (253)
                      +..
T Consensus       150 ~~~  152 (227)
T 1g8a_A          150 DVA  152 (227)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            654

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.11  E-value=2.4e-10  Score=96.65  Aligned_cols=75  Identities=16%  Similarity=0.213  Sum_probs=63.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC---cC-CCCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KL-ERQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~---~~-~~~fD~Vi~  236 (253)
                      .++.+|||+|||+|.++..+++. | ..+|+|+|+|+.|++.+.++++.+  .+++++++|+.+.   +. .++||+|++
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~~~~~~~D~V~~  153 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYRMLIAMVDVIFA  153 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGGGGCCCEEEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhcccCCcEEEEEE
Confidence            46789999999999999999987 3 359999999999999888887765  5899999999884   32 478999998


Q ss_pred             ccc
Q 025428          237 KGT  239 (253)
Q Consensus       237 ~~~  239 (253)
                      +..
T Consensus       154 ~~~  156 (233)
T 2ipx_A          154 DVA  156 (233)
T ss_dssp             CCC
T ss_pred             cCC
Confidence            643

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=99.11  E-value=2e-10  Score=105.19  Aligned_cols=79  Identities=25%  Similarity=0.387  Sum_probs=70.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC---------------------------------------CcEEEEeCCHHHHHHH
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF---------------------------------------SDLTGVDYSEDAINLA  203 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~---------------------------------------~~v~gvD~s~~~l~~a  203 (253)
                      .++.+|||+|||+|.+++.++..+.                                       .+|+|+|+++.|++.|
T Consensus       194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A  273 (385)
T 3ldu_A          194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA  273 (385)
T ss_dssp             CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred             CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence            5678999999999999999987632                                       2699999999999999


Q ss_pred             HHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          204 QSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       204 r~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      ++|+..+|+. +++|.++|+.+++.+.+||+|+++..+.
T Consensus       274 r~Na~~~gl~~~i~~~~~D~~~l~~~~~~D~Iv~NPPyg  312 (385)
T 3ldu_A          274 RENAEIAGVDEYIEFNVGDATQFKSEDEFGFIITNPPYG  312 (385)
T ss_dssp             HHHHHHHTCGGGEEEEECCGGGCCCSCBSCEEEECCCCC
T ss_pred             HHHHHHcCCCCceEEEECChhhcCcCCCCcEEEECCCCc
Confidence            9999999987 6999999999987778999999987654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=99.11  E-value=1.7e-11  Score=105.21  Aligned_cols=88  Identities=19%  Similarity=0.165  Sum_probs=72.0

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC-
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-  227 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~-  227 (253)
                      ...++..+....+..+|||||||+|..+..+++. + ..+|+++|+++.+++.|+++++..|+. +++++++|+.+... 
T Consensus        48 ~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~  127 (242)
T 3r3h_A           48 QAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHS  127 (242)
T ss_dssp             HHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence            4445555544456789999999999999999985 2 349999999999999999999999986 79999999977532 


Q ss_pred             ------CCCccEEEEccc
Q 025428          228 ------ERQFQLVMDKGT  239 (253)
Q Consensus       228 ------~~~fD~Vi~~~~  239 (253)
                            .++||+|++...
T Consensus       128 ~~~~~~~~~fD~V~~d~~  145 (242)
T 3r3h_A          128 LLNEGGEHQFDFIFIDAD  145 (242)
T ss_dssp             HHHHHCSSCEEEEEEESC
T ss_pred             HhhccCCCCEeEEEEcCC
Confidence                  478999998654

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.11  E-value=8.8e-11  Score=98.09  Aligned_cols=73  Identities=15%  Similarity=0.146  Sum_probs=59.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHH----HHHhcCCCceEEEEeccCCCcCC-CCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQS----LANRDGFSCIKFLVDDVLDTKLE-RQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~----~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~  236 (253)
                      .++.+|||+|||+|.++..+++.. ..+|+|+|+|+.|++.+.+    +....++.+++++++|+.+++++ ++ |.|+.
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~  104 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV  104 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence            467899999999999999999983 3499999999999886433    33346777899999999998876 44 76663

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=99.11  E-value=4.4e-10  Score=95.30  Aligned_cols=74  Identities=26%  Similarity=0.289  Sum_probs=66.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCc-CCCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTK-LERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~-~~~~fD~Vi~~  237 (253)
                      .++.+|||+|||+|.++..+++. ..+++++|+++.+++.|+++.+..++ .+++++++|+.+.. .+++||+|+++
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~~  165 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEVPEGIFHAAFVD  165 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCCCTTCBSEEEEC
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcccCCCcccEEEEC
Confidence            57789999999999999999998 55999999999999999999988887 57999999999875 34789999984

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=99.11  E-value=2.6e-10  Score=104.74  Aligned_cols=79  Identities=22%  Similarity=0.267  Sum_probs=69.4

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhcCC---------------------------------------CcEEEEeCCHHHHHH
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQGF---------------------------------------SDLTGVDYSEDAINL  202 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~g~---------------------------------------~~v~gvD~s~~~l~~  202 (253)
                      ..++..|||++||+|.+++.++..+.                                       .+|+|+|+|+.|++.
T Consensus       199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~  278 (393)
T 3k0b_A          199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI  278 (393)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence            35678999999999999999887632                                       259999999999999


Q ss_pred             HHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEcccc
Q 025428          203 AQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       203 ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      |++|++.+|+.+ ++++++|+.+++.+.+||+|+++..+
T Consensus       279 Ar~Na~~~gl~~~I~~~~~D~~~~~~~~~fD~Iv~NPPY  317 (393)
T 3k0b_A          279 AKQNAVEAGLGDLITFRQLQVADFQTEDEYGVVVANPPY  317 (393)
T ss_dssp             HHHHHHHTTCTTCSEEEECCGGGCCCCCCSCEEEECCCC
T ss_pred             HHHHHHHcCCCCceEEEECChHhCCCCCCCCEEEECCCC
Confidence            999999999874 99999999998877899999998654

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.11  E-value=1.2e-10  Score=114.39  Aligned_cols=86  Identities=16%  Similarity=0.135  Sum_probs=73.0

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc--CCC
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK--LER  229 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~--~~~  229 (253)
                      .....+....++.+|||+|||||.++..++..|+.+|+++|+|+.+++.|++|++.+|+.  +++++++|+.+..  ..+
T Consensus       529 ~~r~~l~~~~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~~~  608 (703)
T 3v97_A          529 IARRMLGQMSKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREANE  608 (703)
T ss_dssp             HHHHHHHHHCTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHCCC
T ss_pred             HHHHHHHHhcCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhcCC
Confidence            334444445578899999999999999999988878999999999999999999999986  6999999998742  247


Q ss_pred             CccEEEEccc
Q 025428          230 QFQLVMDKGT  239 (253)
Q Consensus       230 ~fD~Vi~~~~  239 (253)
                      +||+|+++..
T Consensus       609 ~fD~Ii~DPP  618 (703)
T 3v97_A          609 QFDLIFIDPP  618 (703)
T ss_dssp             CEEEEEECCC
T ss_pred             CccEEEECCc
Confidence            8999998764

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=99.11  E-value=1e-10  Score=98.29  Aligned_cols=86  Identities=15%  Similarity=0.185  Sum_probs=69.6

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc--C-
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--L-  227 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~--~-  227 (253)
                      .++..+....++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+++++..|+. +++++++|+.+..  + 
T Consensus        59 ~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~  138 (229)
T 2avd_A           59 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL  138 (229)
T ss_dssp             HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHH
Confidence            34444444467789999999999999999986 2 459999999999999999999988874 7999999986642  1 


Q ss_pred             -C---CCccEEEEccc
Q 025428          228 -E---RQFQLVMDKGT  239 (253)
Q Consensus       228 -~---~~fD~Vi~~~~  239 (253)
                       .   ++||+|+++..
T Consensus       139 ~~~~~~~~D~v~~d~~  154 (229)
T 2avd_A          139 AAGEAGTFDVAVVDAD  154 (229)
T ss_dssp             HTTCTTCEEEEEECSC
T ss_pred             hcCCCCCccEEEECCC
Confidence             1   68999998653

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=99.10  E-value=2.8e-10  Score=105.70  Aligned_cols=78  Identities=17%  Similarity=0.287  Sum_probs=65.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHH-------HHHHHhcC--CCceEEEEeccCCC--cC---
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLA-------QSLANRDG--FSCIKFLVDDVLDT--KL---  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~a-------r~~~~~~g--~~~i~~~~~D~~~~--~~---  227 (253)
                      .++.+|||||||+|.++..++.. |..+|+|+|+++.+++.|       +++++..|  +.+++++++|....  ++   
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~~  320 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  320 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCccccccccccc
Confidence            57789999999999999999996 666899999999999999       88888888  56899999865432  11   


Q ss_pred             CCCccEEEEcccc
Q 025428          228 ERQFQLVMDKGTL  240 (253)
Q Consensus       228 ~~~fD~Vi~~~~l  240 (253)
                      .++||+|+++.++
T Consensus       321 ~~~FDvIvvn~~l  333 (433)
T 1u2z_A          321 IPQCDVILVNNFL  333 (433)
T ss_dssp             GGGCSEEEECCTT
T ss_pred             cCCCCEEEEeCcc
Confidence            3789999987655

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=99.10  E-value=1.7e-10  Score=101.19  Aligned_cols=80  Identities=15%  Similarity=0.279  Sum_probs=62.8

Q ss_pred             CCCEEEEEcCCCcH----HHHHHHhc-C----CCcEEEEeCCHHHHHHHHHHHHh-----------------------cC
Q 025428          164 SSWSVLDIGTGNGL----LLQELSKQ-G----FSDLTGVDYSEDAINLAQSLANR-----------------------DG  211 (253)
Q Consensus       164 ~~~~VLDiGcGtG~----~~~~la~~-g----~~~v~gvD~s~~~l~~ar~~~~~-----------------------~g  211 (253)
                      +..+|||+|||||.    +++.+++. +    ..+|+|+|+|+.||+.|+++...                       .|
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            34699999999998    66666665 3    12899999999999999987410                       11


Q ss_pred             -C-------CceEEEEeccCCCcCC--CCccEEEEcccccee
Q 025428          212 -F-------SCIKFLVDDVLDTKLE--RQFQLVMDKGTLDAI  243 (253)
Q Consensus       212 -~-------~~i~~~~~D~~~~~~~--~~fD~Vi~~~~l~~i  243 (253)
                       .       .+|.|.++|+.+.+++  ++||+|+|..+++|+
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crnvliyf  226 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF  226 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECCchHhC
Confidence             0       2589999999986543  789999999999887

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.10  E-value=1e-10  Score=103.94  Aligned_cols=84  Identities=11%  Similarity=0.108  Sum_probs=68.6

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----  227 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----  227 (253)
                      .+++.+. ..++.+|||+|||+|.++..++++. ..+|+|+|+|+.|++.|+++++.++ .+++++++|+.+++.     
T Consensus        17 e~l~~L~-~~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~   94 (301)
T 1m6y_A           17 EVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTL   94 (301)
T ss_dssp             HHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHT
T ss_pred             HHHHhcC-CCCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhc
Confidence            3444443 2467899999999999999999883 3599999999999999999998877 689999999988641     


Q ss_pred             C-CCccEEEEccc
Q 025428          228 E-RQFQLVMDKGT  239 (253)
Q Consensus       228 ~-~~fD~Vi~~~~  239 (253)
                      . .+||.|+++..
T Consensus        95 g~~~~D~Vl~D~g  107 (301)
T 1m6y_A           95 GIEKVDGILMDLG  107 (301)
T ss_dssp             TCSCEEEEEEECS
T ss_pred             CCCCCCEEEEcCc
Confidence            1 58999998653

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.10  E-value=1.5e-10  Score=98.77  Aligned_cols=87  Identities=15%  Similarity=0.245  Sum_probs=71.1

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc--
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK--  226 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~--  226 (253)
                      ...++..+....+..+|||||||+|..+..+++. + ..+++++|+++.+++.|+++++..|+. +++++++|+.+..  
T Consensus        58 ~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~  137 (237)
T 3c3y_A           58 AGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDN  137 (237)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence            3445555444457789999999999999999987 2 349999999999999999999998886 5999999997642  


Q ss_pred             C------CCCccEEEEcc
Q 025428          227 L------ERQFQLVMDKG  238 (253)
Q Consensus       227 ~------~~~fD~Vi~~~  238 (253)
                      +      .++||+|++..
T Consensus       138 l~~~~~~~~~fD~I~~d~  155 (237)
T 3c3y_A          138 LLQGQESEGSYDFGFVDA  155 (237)
T ss_dssp             HHHSTTCTTCEEEEEECS
T ss_pred             HHhccCCCCCcCEEEECC
Confidence            2      47899999864

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=99.10  E-value=3.6e-10  Score=101.67  Aligned_cols=79  Identities=19%  Similarity=0.312  Sum_probs=68.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++.+ ..+++++|+ +.+++.|++++...++. +++++++|+.+ +++..||+|++..++
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~v~~~~vl  259 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE-PLPRKADAIILSFVL  259 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS-CCSSCEEEEEEESCG
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC-CCCCCccEEEEcccc
Confidence            467899999999999999999884 238999999 99999999999888876 79999999986 344559999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      |++
T Consensus       260 ~~~  262 (360)
T 1tw3_A          260 LNW  262 (360)
T ss_dssp             GGS
T ss_pred             cCC
Confidence            986

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.09  E-value=4.4e-10  Score=97.65  Aligned_cols=76  Identities=18%  Similarity=0.261  Sum_probs=66.5

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCCCCccEEEEc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDK  237 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~~~fD~Vi~~  237 (253)
                      ..++.+|||+|||+|.++..+++. + ..+|+++|+|+.+++.|+++++..++ .+++++++|+.+...+++||+|+++
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~D~V~~~  188 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDALFLD  188 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEEEEEC
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHcccCCccCEEEEC
Confidence            356789999999999999999988 4 45999999999999999999998887 4799999999887334789999985

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.09  E-value=3.5e-10  Score=97.94  Aligned_cols=76  Identities=20%  Similarity=0.275  Sum_probs=66.4

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhc-C--CCceEEEEeccCCCcCC-CCccEEE
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRD-G--FSCIKFLVDDVLDTKLE-RQFQLVM  235 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~-g--~~~i~~~~~D~~~~~~~-~~fD~Vi  235 (253)
                      ..++.+|||+|||+|.++..+++. + ..+|+++|+++.+++.|+++++.. |  ..+++++++|+.+.+++ ++||+|+
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~~~~~~~D~v~  176 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVDRAV  176 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEEEEE
T ss_pred             CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcCCCCCceeEEE
Confidence            357789999999999999999986 3 459999999999999999999877 5  56899999999988764 7899999


Q ss_pred             Ec
Q 025428          236 DK  237 (253)
Q Consensus       236 ~~  237 (253)
                      ++
T Consensus       177 ~~  178 (280)
T 1i9g_A          177 LD  178 (280)
T ss_dssp             EE
T ss_pred             EC
Confidence            84

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.09  E-value=1e-10  Score=106.77  Aligned_cols=82  Identities=21%  Similarity=0.269  Sum_probs=70.7

Q ss_pred             HHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----CCC
Q 025428          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQ  230 (253)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~~~  230 (253)
                      ...+... ++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|+++++.+++.+++++++|+.+...     .++
T Consensus       202 ~~~~~~~-~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~~~~~~~~~~  279 (382)
T 1wxx_A          202 RLYMERF-RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGER  279 (382)
T ss_dssp             HHHGGGC-CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCC
T ss_pred             HHHHHhc-CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHHHHHHhcCCC
Confidence            3445555 6789999999999999999998 56999999999999999999999999889999999987642     468


Q ss_pred             ccEEEEccc
Q 025428          231 FQLVMDKGT  239 (253)
Q Consensus       231 fD~Vi~~~~  239 (253)
                      ||+|+++..
T Consensus       280 fD~Ii~dpP  288 (382)
T 1wxx_A          280 FDLVVLDPP  288 (382)
T ss_dssp             EEEEEECCC
T ss_pred             eeEEEECCC
Confidence            999998643

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.09  E-value=2.8e-10  Score=97.98  Aligned_cols=73  Identities=21%  Similarity=0.213  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++.+|||+|||+|.++..+++. +..+|+|+|+|+.|++.|+++.     .++.++++|+.+++++ ++||+|++..+.
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~~~~~fD~v~~~~~~  158 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIYAP  158 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCCCCCceeEEEEeCCh
Confidence            36789999999999999999987 2349999999999999998874     3689999999988765 799999986653

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=99.09  E-value=3.9e-10  Score=100.54  Aligned_cols=78  Identities=22%  Similarity=0.169  Sum_probs=68.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      +..+|||||||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++++.+|+.+ +.+.+||+|++..+||
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~p~~~D~v~~~~vlh  246 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFD-PLPAGAGGYVLSAVLH  246 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS-CCCCSCSEEEEESCGG
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCC-CCCCCCcEEEEehhhc
Confidence            4579999999999999999987 3348999999 99999999999888874 69999999983 4455899999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ++
T Consensus       247 ~~  248 (332)
T 3i53_A          247 DW  248 (332)
T ss_dssp             GS
T ss_pred             cC
Confidence            87

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=99.09  E-value=4.5e-10  Score=101.23  Aligned_cols=79  Identities=19%  Similarity=0.159  Sum_probs=69.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++.. ..+++++|+ +.+++.|+++++..++.+ ++++.+|+.+.++++ +|+|++..++
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~D~v~~~~vl  266 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYPE-ADAVLFCRIL  266 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCCCC-CSEEEEESCG
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCCCC-CCEEEEechh
Confidence            467899999999999999999882 338999999 999999999998888765 999999999876654 4999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      |++
T Consensus       267 h~~  269 (359)
T 1x19_A          267 YSA  269 (359)
T ss_dssp             GGS
T ss_pred             ccC
Confidence            986

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=99.08  E-value=3.8e-10  Score=103.38  Aligned_cols=80  Identities=18%  Similarity=0.299  Sum_probs=69.9

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhcCC---------------------------------------CcEEEEeCCHHHHHH
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQGF---------------------------------------SDLTGVDYSEDAINL  202 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~g~---------------------------------------~~v~gvD~s~~~l~~  202 (253)
                      ..++..|||.+||+|.+++.++..+.                                       .+|+|+|+|+.|++.
T Consensus       192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~  271 (384)
T 3ldg_A          192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI  271 (384)
T ss_dssp             CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred             CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence            35678999999999999999887632                                       259999999999999


Q ss_pred             HHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEccccc
Q 025428          203 AQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       203 ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      |++|++.+|+.+ ++++++|+.+++.+.+||+|+++..+.
T Consensus       272 Ar~Na~~~gl~~~I~~~~~D~~~l~~~~~fD~Iv~NPPYG  311 (384)
T 3ldg_A          272 ARKNAREVGLEDVVKLKQMRLQDFKTNKINGVLISNPPYG  311 (384)
T ss_dssp             HHHHHHHTTCTTTEEEEECCGGGCCCCCCSCEEEECCCCT
T ss_pred             HHHHHHHcCCCCceEEEECChHHCCccCCcCEEEECCchh
Confidence            999999999875 999999999987778999999987654

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.08  E-value=5.2e-10  Score=95.79  Aligned_cols=74  Identities=12%  Similarity=0.117  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---C-CCCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---L-ERQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---~-~~~fD~Vi~  236 (253)
                      .++.+|||+|||+|.++..+++. |. .+|+|+|++++|++.++++++..  .|+..+.+|.....   . .+++|+|++
T Consensus        76 kpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~~~~~~~vDvVf~  153 (233)
T 4df3_A           76 KEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKYRHLVEGVDGLYA  153 (233)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccccccccceEEEEEE
Confidence            68899999999999999999987 43 38999999999999999987654  48999999987653   2 378999987


Q ss_pred             cc
Q 025428          237 KG  238 (253)
Q Consensus       237 ~~  238 (253)
                      ..
T Consensus       154 d~  155 (233)
T 4df3_A          154 DV  155 (233)
T ss_dssp             CC
T ss_pred             ec
Confidence            43

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=99.07  E-value=1.4e-10  Score=106.89  Aligned_cols=76  Identities=12%  Similarity=0.043  Sum_probs=66.4

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc--CCCceEEEEeccCCC-cC--CCCccEEEEcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVDDVLDT-KL--ERQFQLVMDKG  238 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~--g~~~i~~~~~D~~~~-~~--~~~fD~Vi~~~  238 (253)
                      ++.+|||+|||+|..+..+++.+. +|+++|+|+.|++.|++|++.+  |+.+++++++|+.+. +.  .++||+|+++.
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~lDP  171 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYIYVDP  171 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEEEECC
T ss_pred             CCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEEEECC
Confidence            478999999999999999998865 9999999999999999999988  887899999999885 22  25899999865


Q ss_pred             cc
Q 025428          239 TL  240 (253)
Q Consensus       239 ~l  240 (253)
                      ..
T Consensus       172 Pr  173 (410)
T 3ll7_A          172 AR  173 (410)
T ss_dssp             EE
T ss_pred             CC
Confidence            43

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.07  E-value=5.5e-10  Score=99.88  Aligned_cols=83  Identities=19%  Similarity=0.196  Sum_probs=65.3

Q ss_pred             HHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHHhcC-----------CCceEEEEec
Q 025428          155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDG-----------FSCIKFLVDD  221 (253)
Q Consensus       155 l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~~~g-----------~~~i~~~~~D  221 (253)
                      ++..+ ...++.+|||+|||+|.++..+++. |. .+|+|+|+++.+++.|++++...+           ..+++++++|
T Consensus        97 ~l~~l-~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d  175 (336)
T 2b25_A           97 ILSMM-DINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKD  175 (336)
T ss_dssp             HHHHH-TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESC
T ss_pred             HHHhc-CCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECC
Confidence            34444 3467889999999999999999987 54 599999999999999999987532           2479999999


Q ss_pred             cCCCc--CC-CCccEEEEcc
Q 025428          222 VLDTK--LE-RQFQLVMDKG  238 (253)
Q Consensus       222 ~~~~~--~~-~~fD~Vi~~~  238 (253)
                      +.+..  ++ ++||+|+++.
T Consensus       176 ~~~~~~~~~~~~fD~V~~~~  195 (336)
T 2b25_A          176 ISGATEDIKSLTFDAVALDM  195 (336)
T ss_dssp             TTCCC-------EEEEEECS
T ss_pred             hHHcccccCCCCeeEEEECC
Confidence            98873  33 6899999864

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=99.06  E-value=8.1e-10  Score=99.28  Aligned_cols=80  Identities=24%  Similarity=0.189  Sum_probs=69.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC------CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF------SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~------~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~  236 (253)
                      .++.+|||+|||+|.++..+++...      .+++|+|+++.+++.|+.++...|+ ++.++++|.......++||+|++
T Consensus       129 ~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~~~~~fD~Ii~  207 (344)
T 2f8l_A          129 KKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPVDVVIS  207 (344)
T ss_dssp             CSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCEEEEEE
T ss_pred             CCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCccccCCccEEEE
Confidence            3567999999999999999987731      4899999999999999999988887 79999999987655588999999


Q ss_pred             cccccee
Q 025428          237 KGTLDAI  243 (253)
Q Consensus       237 ~~~l~~i  243 (253)
                      +..++++
T Consensus       208 NPPfg~~  214 (344)
T 2f8l_A          208 DLPVGYY  214 (344)
T ss_dssp             ECCCSEE
T ss_pred             CCCCCCc
Confidence            9998775

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.05  E-value=3.3e-10  Score=99.19  Aligned_cols=84  Identities=18%  Similarity=0.251  Sum_probs=68.1

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--C
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--R  229 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~  229 (253)
                      ...+++.+.. .++ +|||||||+|.++..+++.+ .+|+|+|+++.|++.+++++..   .+++++++|+.+++++  .
T Consensus        36 ~~~Iv~~~~~-~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~---~~v~vi~~D~l~~~~~~~~  109 (271)
T 3fut_A           36 LRRIVEAARP-FTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG---LPVRLVFQDALLYPWEEVP  109 (271)
T ss_dssp             HHHHHHHHCC-CCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT---SSEEEEESCGGGSCGGGSC
T ss_pred             HHHHHHhcCC-CCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC---CCEEEEECChhhCChhhcc
Confidence            3344444433 456 99999999999999999996 4999999999999999998752   4899999999998765  3


Q ss_pred             CccEEEEccccc
Q 025428          230 QFQLVMDKGTLD  241 (253)
Q Consensus       230 ~fD~Vi~~~~l~  241 (253)
                      .+|.|++|-.++
T Consensus       110 ~~~~iv~NlPy~  121 (271)
T 3fut_A          110 QGSLLVANLPYH  121 (271)
T ss_dssp             TTEEEEEEECSS
T ss_pred             CccEEEecCccc
Confidence            689999876544

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=99.05  E-value=8e-10  Score=100.23  Aligned_cols=79  Identities=18%  Similarity=0.176  Sum_probs=69.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .+..+|||||||+|.++..+++.. ..+++++|+ +.+++.|++++...++. +++++.+|+.+ +++..||+|++..+|
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~-~~p~~~D~v~~~~vl  278 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFE-TIPDGADVYLIKHVL  278 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTT-CCCSSCSEEEEESCG
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCC-CCCCCceEEEhhhhh
Confidence            456899999999999999999882 338999999 99999999999888864 69999999983 455589999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      |++
T Consensus       279 h~~  281 (369)
T 3gwz_A          279 HDW  281 (369)
T ss_dssp             GGS
T ss_pred             ccC
Confidence            986

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=99.05  E-value=5.9e-10  Score=104.90  Aligned_cols=89  Identities=12%  Similarity=0.092  Sum_probs=73.4

Q ss_pred             cccchHHHHhccCC--CCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC
Q 025428          150 DLKSEPVEENDKYL--SSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  225 (253)
Q Consensus       150 ~~~~~l~~~l~~~~--~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~  225 (253)
                      +..+.+...+....  ++.+|||+|||+|..+..++.. + ...|+++|+|+.+++.+++++++.|+.++.++++|+.++
T Consensus       101 d~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~  180 (479)
T 2frx_A          101 EASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVF  180 (479)
T ss_dssp             CHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTH
T ss_pred             CHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHh
Confidence            33444444444445  7889999999999999999987 2 348999999999999999999999998999999999987


Q ss_pred             c--CCCCccEEEEcc
Q 025428          226 K--LERQFQLVMDKG  238 (253)
Q Consensus       226 ~--~~~~fD~Vi~~~  238 (253)
                      +  .+++||+|+++.
T Consensus       181 ~~~~~~~fD~Il~D~  195 (479)
T 2frx_A          181 GAAVPEMFDAILLDA  195 (479)
T ss_dssp             HHHSTTCEEEEEEEC
T ss_pred             hhhccccCCEEEECC
Confidence            5  357899999854

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.05  E-value=1.2e-09  Score=93.45  Aligned_cols=77  Identities=17%  Similarity=0.160  Sum_probs=61.6

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----CCCCccEEE
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLVM  235 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----~~~~fD~Vi  235 (253)
                      +.++.+|||+|||+|.++..+++. + ..+|+|+|+|+.|++...+.++..  .|+.++++|+....    +.++||+|+
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~~~~~~~D~I~  151 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYKSVVENVDVLY  151 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTTTTCCCEEEEE
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhhccccceEEEE
Confidence            357899999999999999999987 3 349999999999987665555443  58999999998753    236899999


Q ss_pred             Ecccc
Q 025428          236 DKGTL  240 (253)
Q Consensus       236 ~~~~l  240 (253)
                      ++..+
T Consensus       152 ~d~a~  156 (232)
T 3id6_C          152 VDIAQ  156 (232)
T ss_dssp             ECCCC
T ss_pred             ecCCC
Confidence            87653

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.04  E-value=3.4e-10  Score=104.00  Aligned_cols=81  Identities=21%  Similarity=0.205  Sum_probs=66.6

Q ss_pred             HHhccCC-CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CCCCccE
Q 025428          157 EENDKYL-SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LERQFQL  233 (253)
Q Consensus       157 ~~l~~~~-~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~~~fD~  233 (253)
                      ..+.... ++.+|||+|||||.++..++..|+. |+++|+|+.|++.|++|++.+++. .++.++|+.+..  ..+.||+
T Consensus       206 ~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga~-V~avDis~~al~~a~~n~~~ng~~-~~~~~~D~~~~l~~~~~~fD~  283 (393)
T 4dmg_A          206 RLFEAMVRPGERVLDVYSYVGGFALRAARKGAY-ALAVDKDLEALGVLDQAALRLGLR-VDIRHGEALPTLRGLEGPFHH  283 (393)
T ss_dssp             HHHHTTCCTTCEEEEESCTTTHHHHHHHHTTCE-EEEEESCHHHHHHHHHHHHHHTCC-CEEEESCHHHHHHTCCCCEEE
T ss_pred             HHHHHHhcCCCeEEEcccchhHHHHHHHHcCCe-EEEEECCHHHHHHHHHHHHHhCCC-CcEEEccHHHHHHHhcCCCCE
Confidence            3333443 4889999999999999999999874 999999999999999999999985 467799998753  2445999


Q ss_pred             EEEccc
Q 025428          234 VMDKGT  239 (253)
Q Consensus       234 Vi~~~~  239 (253)
                      |+++..
T Consensus       284 Ii~dpP  289 (393)
T 4dmg_A          284 VLLDPP  289 (393)
T ss_dssp             EEECCC
T ss_pred             EEECCC
Confidence            998654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=99.04  E-value=2.2e-10  Score=97.32  Aligned_cols=88  Identities=17%  Similarity=0.201  Sum_probs=69.6

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCC---
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT---  225 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~---  225 (253)
                      ...++..+....++.+|||||||+|..+..+++. + ..+|+++|+|+.+++.|+++++..|+. +++++++|+.+.   
T Consensus        60 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~  139 (232)
T 3cbg_A           60 QAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQ  139 (232)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHH
Confidence            3444444444446789999999999999999987 2 348999999999999999999888886 599999998653   


Q ss_pred             -cC-C--CCccEEEEccc
Q 025428          226 -KL-E--RQFQLVMDKGT  239 (253)
Q Consensus       226 -~~-~--~~fD~Vi~~~~  239 (253)
                       +. +  ++||+|++...
T Consensus       140 l~~~~~~~~fD~V~~d~~  157 (232)
T 3cbg_A          140 LTQGKPLPEFDLIFIDAD  157 (232)
T ss_dssp             HHTSSSCCCEEEEEECSC
T ss_pred             HHhcCCCCCcCEEEECCC
Confidence             11 1  68999998754

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=99.03  E-value=3.3e-10  Score=100.83  Aligned_cols=76  Identities=14%  Similarity=0.190  Sum_probs=67.0

Q ss_pred             CEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccccee
Q 025428          166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTLDAI  243 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~i  243 (253)
                      .+|||+|||+|.++..+++. +..+++++|+ +.+++.|++++...++. +++++.+|+.+ +++++||+|++..++|++
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~~~~~~D~v~~~~vl~~~  246 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-EVPSNGDIYLLSRIIGDL  246 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-CCCSSCSEEEEESCGGGC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-CCCCCCCEEEEchhccCC
Confidence            89999999999999999987 2348999999 99999999998776653 69999999988 466789999999999976

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=99.02  E-value=3.2e-10  Score=106.07  Aligned_cols=90  Identities=14%  Similarity=0.052  Sum_probs=76.0

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-  226 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-  226 (253)
                      +..+.++..+....++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++|+++.|+.++.++++|+.++. 
T Consensus        91 d~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~  170 (456)
T 3m4x_A           91 EPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVP  170 (456)
T ss_dssp             CTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHH
T ss_pred             CHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhh
Confidence            444555555556678899999999999999999986  33489999999999999999999999989999999998875 


Q ss_pred             -CCCCccEEEEccc
Q 025428          227 -LERQFQLVMDKGT  239 (253)
Q Consensus       227 -~~~~fD~Vi~~~~  239 (253)
                       ++++||+|+++..
T Consensus       171 ~~~~~FD~Il~DaP  184 (456)
T 3m4x_A          171 HFSGFFDRIVVDAP  184 (456)
T ss_dssp             HHTTCEEEEEEECC
T ss_pred             hccccCCEEEECCC
Confidence             3589999998654

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=99.01  E-value=1.4e-09  Score=101.48  Aligned_cols=86  Identities=15%  Similarity=0.117  Sum_probs=72.3

Q ss_pred             chHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC
Q 025428          153 SEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE  228 (253)
Q Consensus       153 ~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~  228 (253)
                      +.+...+....++.+|||+|||+|..+..++.. +. .+|+++|+|+.+++.+++++++.|+.+++++++|+.+++  ++
T Consensus       248 s~l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~  327 (450)
T 2yxl_A          248 SAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIG  327 (450)
T ss_dssp             HHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSC
T ss_pred             hHHHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhc
Confidence            344444445567889999999999999999986 22 589999999999999999999999989999999999876  44


Q ss_pred             -CCccEEEEcc
Q 025428          229 -RQFQLVMDKG  238 (253)
Q Consensus       229 -~~fD~Vi~~~  238 (253)
                       ++||+|+++.
T Consensus       328 ~~~fD~Vl~D~  338 (450)
T 2yxl_A          328 EEVADKVLLDA  338 (450)
T ss_dssp             SSCEEEEEEEC
T ss_pred             cCCCCEEEEcC
Confidence             7899999753

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.00  E-value=1e-09  Score=94.20  Aligned_cols=73  Identities=15%  Similarity=0.268  Sum_probs=61.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~~~~  239 (253)
                      .++.+|||||||+|.++..+++++ .+|+|+|+|+.|++.+++++..  ..+++++++|+.+++++  ..| .|+++..
T Consensus        29 ~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~~~~~~~~~-~vv~nlP  103 (244)
T 1qam_A           29 NEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPKNQSY-KIFGNIP  103 (244)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCSSCCC-EEEEECC
T ss_pred             CCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhCCcccCCCe-EEEEeCC
Confidence            467899999999999999999996 5999999999999999998754  25899999999998765  345 4666543

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.00  E-value=3.5e-10  Score=89.90  Aligned_cols=71  Identities=21%  Similarity=0.264  Sum_probs=59.9

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--------CC-CC
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--------LE-RQ  230 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--------~~-~~  230 (253)
                      ..++.+|||+|||+|.++..+++. |. .+++|+|+++ |++.          .+++++++|+.+.+        ++ ++
T Consensus        20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~----------~~~~~~~~d~~~~~~~~~~~~~~~~~~   88 (180)
T 1ej0_A           20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI----------VGVDFLQGDFRDELVMKALLERVGDSK   88 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC----------TTEEEEESCTTSHHHHHHHHHHHTTCC
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc----------CcEEEEEcccccchhhhhhhccCCCCc
Confidence            356789999999999999999988 43 5999999999 7642          47899999999875        44 78


Q ss_pred             ccEEEEcccccee
Q 025428          231 FQLVMDKGTLDAI  243 (253)
Q Consensus       231 fD~Vi~~~~l~~i  243 (253)
                      ||+|+++.++++.
T Consensus        89 ~D~i~~~~~~~~~  101 (180)
T 1ej0_A           89 VQVVMSDMAPNMS  101 (180)
T ss_dssp             EEEEEECCCCCCC
T ss_pred             eeEEEECCCcccc
Confidence            9999999888765

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.00  E-value=8.7e-11  Score=107.89  Aligned_cols=77  Identities=18%  Similarity=0.226  Sum_probs=61.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc--eEEEEeccCCCcCC-CCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKLE-RQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~--i~~~~~D~~~~~~~-~~fD~Vi~~~~  239 (253)
                      .++.+|||||||+|.++..+++.|. +|+|+|+|+.|++.|+++    ++..  ..+...+...++++ ++||+|++..+
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~v  180 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREK----GIRVRTDFFEKATADDVRRTEGPANVIYAANT  180 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTT----TCCEECSCCSHHHHHHHHHHHCCEEEEEEESC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHc----CCCcceeeechhhHhhcccCCCCEEEEEECCh
Confidence            4677999999999999999999977 999999999999999876    3322  12334445445544 89999999999


Q ss_pred             cceec
Q 025428          240 LDAIG  244 (253)
Q Consensus       240 l~~i~  244 (253)
                      |||+.
T Consensus       181 l~h~~  185 (416)
T 4e2x_A          181 LCHIP  185 (416)
T ss_dssp             GGGCT
T ss_pred             HHhcC
Confidence            99983

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.99  E-value=6.2e-10  Score=104.29  Aligned_cols=89  Identities=13%  Similarity=0.046  Sum_probs=74.0

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-  226 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-  226 (253)
                      +..+.++..+....++.+|||+|||+|..+..++..  +..+|+++|+|+.+++.+++++++.|+. +.++++|+.+++ 
T Consensus        87 d~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~  165 (464)
T 3m6w_A           87 EPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAE  165 (464)
T ss_dssp             CTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHH
T ss_pred             CHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhh
Confidence            344455555555678899999999999999999977  2248999999999999999999999997 999999998875 


Q ss_pred             -CCCCccEEEEccc
Q 025428          227 -LERQFQLVMDKGT  239 (253)
Q Consensus       227 -~~~~fD~Vi~~~~  239 (253)
                       .+++||+|+++..
T Consensus       166 ~~~~~FD~Il~D~P  179 (464)
T 3m6w_A          166 AFGTYFHRVLLDAP  179 (464)
T ss_dssp             HHCSCEEEEEEECC
T ss_pred             hccccCCEEEECCC
Confidence             3588999997543

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.97  E-value=1.2e-09  Score=89.77  Aligned_cols=70  Identities=16%  Similarity=0.292  Sum_probs=57.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-C--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-------------
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-G--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-------------  226 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-------------  226 (253)
                      .++.+|||+|||+|.++..++++ +  ..+|+|+|+|+.+           ...+++++++|+.+.+             
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~   89 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDNM   89 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC---------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhccccccccc
Confidence            46779999999999999999987 3  3589999999931           2357899999998876             


Q ss_pred             ------------CC-CCccEEEEcccccee
Q 025428          227 ------------LE-RQFQLVMDKGTLDAI  243 (253)
Q Consensus       227 ------------~~-~~fD~Vi~~~~l~~i  243 (253)
                                  ++ ++||+|+++..+|+.
T Consensus        90 ~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~  119 (201)
T 2plw_A           90 NNNSVDYKLKEILQDKKIDIILSDAAVPCI  119 (201)
T ss_dssp             --CHHHHHHHHHHTTCCEEEEEECCCCCCC
T ss_pred             cchhhHHHHHhhcCCCcccEEEeCCCcCCC
Confidence                        34 689999999887764

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.97  E-value=6.2e-10  Score=96.13  Aligned_cols=73  Identities=15%  Similarity=0.251  Sum_probs=60.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCC---CccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER---QFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~---~fD~Vi~~~~  239 (253)
                      .++.+|||||||+|.++..+++.|..+|+|+|+++.|++.++++    +..+++++++|+.+++++.   .| .|+.+..
T Consensus        30 ~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~~~~~~-~vv~NlP  104 (249)
T 3ftd_A           30 EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCSLGKEL-KVVGNLP  104 (249)
T ss_dssp             CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGGSCSSE-EEEEECC
T ss_pred             CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhHccCCc-EEEEECc
Confidence            46789999999999999999999656999999999999999887    2247999999999987653   33 5666543


Q ss_pred             c
Q 025428          240 L  240 (253)
Q Consensus       240 l  240 (253)
                      +
T Consensus       105 y  105 (249)
T 3ftd_A          105 Y  105 (249)
T ss_dssp             T
T ss_pred             h
Confidence            3

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.97  E-value=7.3e-10  Score=97.03  Aligned_cols=82  Identities=21%  Similarity=0.178  Sum_probs=61.1

Q ss_pred             CCCEEEEEcCCC--cHHHHHHHh-c-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-------CCCcc
Q 025428          164 SSWSVLDIGTGN--GLLLQELSK-Q-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-------ERQFQ  232 (253)
Q Consensus       164 ~~~~VLDiGcGt--G~~~~~la~-~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-------~~~fD  232 (253)
                      ...+|||||||+  +..+..++. . +..+|+++|.|+.||+.|++++...+..+++|+++|+.++..       .+.||
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D  157 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLD  157 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccC
Confidence            446899999997  333344433 2 334999999999999999999865543479999999988521       24455


Q ss_pred             -----EEEEccccceecc
Q 025428          233 -----LVMDKGTLDAIGL  245 (253)
Q Consensus       233 -----~Vi~~~~l~~i~~  245 (253)
                           .|+++.+|||+.-
T Consensus       158 ~~~p~av~~~avLH~l~d  175 (277)
T 3giw_A          158 LTRPVALTVIAIVHFVLD  175 (277)
T ss_dssp             TTSCCEEEEESCGGGSCG
T ss_pred             cCCcchHHhhhhHhcCCc
Confidence                 6889999999843

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.96  E-value=1e-09  Score=96.45  Aligned_cols=79  Identities=15%  Similarity=0.103  Sum_probs=62.0

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCc----EEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCC
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSD----LTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER  229 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~----v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~  229 (253)
                      .+++.+.. .++.+|||||||+|.++..+++.+. +    |+|+|+++.|++.++++.    ..+++++++|+.+++++.
T Consensus        33 ~iv~~~~~-~~~~~VLEIG~G~G~lt~~La~~~~-~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           33 AIVAAIRP-ERGERMVEIGPGLGALTGPVIARLA-TPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDFGS  106 (279)
T ss_dssp             HHHHHHCC-CTTCEEEEECCTTSTTHHHHHHHHC-BTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCGGG
T ss_pred             HHHHhcCC-CCcCEEEEEccccHHHHHHHHHhCC-CcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCChhH
Confidence            34444432 4678999999999999999999854 5    999999999999999983    248999999999987643


Q ss_pred             C-------ccEEEEcc
Q 025428          230 Q-------FQLVMDKG  238 (253)
Q Consensus       230 ~-------fD~Vi~~~  238 (253)
                      .       ...|+.|-
T Consensus       107 ~~~~~~~~~~~vv~Nl  122 (279)
T 3uzu_A          107 IARPGDEPSLRIIGNL  122 (279)
T ss_dssp             GSCSSSSCCEEEEEEC
T ss_pred             hcccccCCceEEEEcc
Confidence            2       23566655

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.95  E-value=1.1e-09  Score=97.03  Aligned_cols=79  Identities=19%  Similarity=0.158  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHh----cCCCceEEEEeccCCCcC---CCCccEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR----DGFSCIKFLVDDVLDTKL---ERQFQLV  234 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~----~g~~~i~~~~~D~~~~~~---~~~fD~V  234 (253)
                      .++.+|||||||+|.++..++++ +..+|+++|+|+.+++.|++++..    ..-.+++++++|+.+...   +++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            35679999999999999999988 455999999999999999998742    122479999999987652   4789999


Q ss_pred             EEccccc
Q 025428          235 MDKGTLD  241 (253)
Q Consensus       235 i~~~~l~  241 (253)
                      +++...+
T Consensus       174 i~d~~~~  180 (304)
T 3bwc_A          174 IIDTTDP  180 (304)
T ss_dssp             EEECC--
T ss_pred             EECCCCc
Confidence            9976554

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.94  E-value=1.1e-09  Score=95.97  Aligned_cols=77  Identities=23%  Similarity=0.350  Sum_probs=63.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc--C---------CCceEEEEeccCCCcC-CCC
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--G---------FSCIKFLVDDVLDTKL-ERQ  230 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~--g---------~~~i~~~~~D~~~~~~-~~~  230 (253)
                      ..+.+|||||||+|.++..+++++..+|+++|+++.+++.|++++ ..  +         -.+++++++|+.+... +++
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~~~~  152 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRG  152 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCC
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcccCC
Confidence            356799999999999999999986669999999999999999987 33  2         2479999999866421 578


Q ss_pred             ccEEEEcccc
Q 025428          231 FQLVMDKGTL  240 (253)
Q Consensus       231 fD~Vi~~~~l  240 (253)
                      ||+|+++...
T Consensus       153 fD~Ii~d~~~  162 (281)
T 1mjf_A          153 FDVIIADSTD  162 (281)
T ss_dssp             EEEEEEECCC
T ss_pred             eeEEEECCCC
Confidence            9999986653

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.93  E-value=1.9e-09  Score=94.27  Aligned_cols=77  Identities=23%  Similarity=0.320  Sum_probs=64.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHh--cCC--CceEEEEeccCCCc--CCCCccEEEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR--DGF--SCIKFLVDDVLDTK--LERQFQLVMD  236 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~--~g~--~~i~~~~~D~~~~~--~~~~fD~Vi~  236 (253)
                      ...+|||||||+|.++..++++ +..+|+++|+++.+++.|++++..  .++  ++++++++|+.+..  .+++||+|++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii~  154 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIMV  154 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEEE
T ss_pred             CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEEE
Confidence            5679999999999999999988 667999999999999999998754  133  47999999987642  2478999999


Q ss_pred             cccc
Q 025428          237 KGTL  240 (253)
Q Consensus       237 ~~~l  240 (253)
                      +...
T Consensus       155 d~~~  158 (275)
T 1iy9_A          155 DSTE  158 (275)
T ss_dssp             SCSS
T ss_pred             CCCC
Confidence            6554

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.92  E-value=2e-09  Score=96.85  Aligned_cols=77  Identities=16%  Similarity=0.337  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc--CC--CceEEEEeccCCCc--C-CCCccEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTK--L-ERQFQLV  234 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~--g~--~~i~~~~~D~~~~~--~-~~~fD~V  234 (253)
                      ....+|||||||+|.++..++++ +..+|+++|+|+.|++.|++++...  ++  .+++++++|+.+..  . +++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            45689999999999999999988 3459999999999999999998652  33  47999999987642  2 3789999


Q ss_pred             EEccc
Q 025428          235 MDKGT  239 (253)
Q Consensus       235 i~~~~  239 (253)
                      +++..
T Consensus       199 i~d~~  203 (334)
T 1xj5_A          199 IVDSS  203 (334)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            98654

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.92  E-value=1.4e-09  Score=96.89  Aligned_cols=79  Identities=22%  Similarity=0.271  Sum_probs=65.2

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHh--cC---CCceEEEEeccCCC-c-CCCCccEEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR--DG---FSCIKFLVDDVLDT-K-LERQFQLVM  235 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~--~g---~~~i~~~~~D~~~~-~-~~~~fD~Vi  235 (253)
                      ...+|||||||+|.++..++++ +..+|+++|+++.+++.|++++..  .+   -.+++++++|+.+. + .+++||+|+
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVVI  156 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEEE
Confidence            5579999999999999999988 456999999999999999998764  22   24799999999874 2 247899999


Q ss_pred             Eccccce
Q 025428          236 DKGTLDA  242 (253)
Q Consensus       236 ~~~~l~~  242 (253)
                      ++...+.
T Consensus       157 ~d~~~~~  163 (314)
T 1uir_A          157 IDLTDPV  163 (314)
T ss_dssp             EECCCCB
T ss_pred             ECCCCcc
Confidence            9765543

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.92  E-value=9e-10  Score=97.27  Aligned_cols=76  Identities=9%  Similarity=0.095  Sum_probs=56.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceE-EEEeccCCCc---CC-CCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIK-FLVDDVLDTK---LE-RQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~-~~~~D~~~~~---~~-~~fD~Vi~~  237 (253)
                      .++.+|||+|||||.++..++++|+.+|+|+|+|++||+.+.++.     .++. +...|+..+.   ++ .+||+|++.
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~-----~rv~~~~~~ni~~l~~~~l~~~~fD~v~~d  158 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD-----DRVRSMEQYNFRYAEPVDFTEGLPSFASID  158 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC-----TTEEEECSCCGGGCCGGGCTTCCCSEEEEC
T ss_pred             ccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----cccceecccCceecchhhCCCCCCCEEEEE
Confidence            467799999999999999999998889999999999999865421     1222 2233444433   23 459999998


Q ss_pred             ccccee
Q 025428          238 GTLDAI  243 (253)
Q Consensus       238 ~~l~~i  243 (253)
                      .+|+++
T Consensus       159 ~sf~sl  164 (291)
T 3hp7_A          159 VSFISL  164 (291)
T ss_dssp             CSSSCG
T ss_pred             eeHhhH
Confidence            888754

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.92  E-value=2.3e-09  Score=88.72  Aligned_cols=66  Identities=17%  Similarity=0.294  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC--------C----CC
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--------E----RQ  230 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~--------~----~~  230 (253)
                      .++.+|||+|||+|.++..++++ ..+|+|+|+++.           ..+.+++++++|+.+...        .    ++
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~-----------~~~~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~   91 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEM-----------EEIAGVRFIRCDIFKETIFDDIDRALREEGIEK   91 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCC-----------CCCTTCEEEECCTTSSSHHHHHHHHHHHHTCSS
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc-CCcEEEEecccc-----------ccCCCeEEEEccccCHHHHHHHHHHhhcccCCc
Confidence            57789999999999999999999 449999999984           133579999999988642        1    48


Q ss_pred             ccEEEEcccc
Q 025428          231 FQLVMDKGTL  240 (253)
Q Consensus       231 fD~Vi~~~~l  240 (253)
                      ||+|+++...
T Consensus        92 ~D~Vlsd~~~  101 (191)
T 3dou_A           92 VDDVVSDAMA  101 (191)
T ss_dssp             EEEEEECCCC
T ss_pred             ceEEecCCCc
Confidence            9999997644

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.91  E-value=1.3e-09  Score=99.59  Aligned_cols=75  Identities=21%  Similarity=0.127  Sum_probs=65.8

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc---------------CCCceEEEEeccCCCcC
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD---------------GFSCIKFLVDDVLDTKL  227 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~---------------g~~~i~~~~~D~~~~~~  227 (253)
                      ++.+|||+|||+|.+++.++.. +..+|+++|+++.+++.+++|++.+               ++.+++++++|+.++..
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~  126 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA  126 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence            6789999999999999999998 5568999999999999999999998               88779999999977632


Q ss_pred             --CCCccEEEEcc
Q 025428          228 --ERQFQLVMDKG  238 (253)
Q Consensus       228 --~~~fD~Vi~~~  238 (253)
                        .++||+|+.+.
T Consensus       127 ~~~~~fD~I~lDP  139 (378)
T 2dul_A          127 ERHRYFHFIDLDP  139 (378)
T ss_dssp             HSTTCEEEEEECC
T ss_pred             hccCCCCEEEeCC
Confidence              36799999754

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.91  E-value=1.9e-09  Score=95.25  Aligned_cols=76  Identities=20%  Similarity=0.313  Sum_probs=62.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHh--cCC--CceEEEEeccCCC-c-CCCCccEEEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR--DGF--SCIKFLVDDVLDT-K-LERQFQLVMD  236 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~--~g~--~~i~~~~~D~~~~-~-~~~~fD~Vi~  236 (253)
                      .+.+|||||||+|.++..++++ +..+|+++|+|+.+++.|++++..  .++  .+++++++|+.+. + .+++||+|++
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii~  169 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVIII  169 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEEE
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEEE
Confidence            4579999999999999999998 556999999999999999998754  222  4799999998764 2 2478999998


Q ss_pred             ccc
Q 025428          237 KGT  239 (253)
Q Consensus       237 ~~~  239 (253)
                      +..
T Consensus       170 d~~  172 (296)
T 1inl_A          170 DST  172 (296)
T ss_dssp             EC-
T ss_pred             cCC
Confidence            643

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.91  E-value=2.3e-09  Score=99.78  Aligned_cols=93  Identities=17%  Similarity=0.148  Sum_probs=75.7

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--------------CCCcEEEEeCCHHHHHHHHHHHHhcCCC--
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--------------GFSDLTGVDYSEDAINLAQSLANRDGFS--  213 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--------------g~~~v~gvD~s~~~l~~ar~~~~~~g~~--  213 (253)
                      .+...+++.+. +.++.+|||+|||+|.++..+++.              ...+++|+|+++.+++.|+.++...|+.  
T Consensus       158 ~v~~~mv~~l~-~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~~  236 (445)
T 2okc_A          158 PLIQAMVDCIN-PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGTD  236 (445)
T ss_dssp             HHHHHHHHHHC-CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCSS
T ss_pred             HHHHHHHHHhC-CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCcC
Confidence            44445555553 346779999999999999988864              1248999999999999999999888875  


Q ss_pred             ceEEEEeccCCCcCCCCccEEEEcccccee
Q 025428          214 CIKFLVDDVLDTKLERQFQLVMDKGTLDAI  243 (253)
Q Consensus       214 ~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~i  243 (253)
                      ++.++++|....+...+||+|+++..+...
T Consensus       237 ~~~i~~gD~l~~~~~~~fD~Iv~NPPf~~~  266 (445)
T 2okc_A          237 RSPIVCEDSLEKEPSTLVDVILANPPFGTR  266 (445)
T ss_dssp             CCSEEECCTTTSCCSSCEEEEEECCCSSCC
T ss_pred             CCCEeeCCCCCCcccCCcCEEEECCCCCCc
Confidence            688999999887666789999999888764

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.90  E-value=1.4e-09  Score=97.19  Aligned_cols=76  Identities=16%  Similarity=0.354  Sum_probs=63.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHh--cCC--CceEEEEeccCCCc--CCCCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR--DGF--SCIKFLVDDVLDTK--LERQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~--~g~--~~i~~~~~D~~~~~--~~~~fD~Vi  235 (253)
                      ..+.+|||||||+|.++..++++ +..+|+++|+|+.+++.|++++..  .++  .+++++++|+.+..  .+++||+|+
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi  194 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  194 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEE
Confidence            35679999999999999999988 456999999999999999999865  223  47999999987642  247899999


Q ss_pred             Ecc
Q 025428          236 DKG  238 (253)
Q Consensus       236 ~~~  238 (253)
                      ++.
T Consensus       195 ~d~  197 (321)
T 2pt6_A          195 VDS  197 (321)
T ss_dssp             EEC
T ss_pred             ECC
Confidence            865

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.89  E-value=2.2e-09  Score=95.22  Aligned_cols=78  Identities=23%  Similarity=0.392  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHh--cCC--CceEEEEeccCCC-c-CCCCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR--DGF--SCIKFLVDDVLDT-K-LERQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~--~g~--~~i~~~~~D~~~~-~-~~~~fD~Vi  235 (253)
                      ....+|||||||+|.++..++++ +..+|+++|+++.+++.|++++..  .++  .+++++++|+.+. + .+++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            35679999999999999999988 346999999999999999998765  233  4799999998763 2 247899999


Q ss_pred             Ecccc
Q 025428          236 DKGTL  240 (253)
Q Consensus       236 ~~~~l  240 (253)
                      ++...
T Consensus       174 ~d~~~  178 (304)
T 2o07_A          174 TDSSD  178 (304)
T ss_dssp             EECC-
T ss_pred             ECCCC
Confidence            86543

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.89  E-value=7.3e-10  Score=94.63  Aligned_cols=71  Identities=17%  Similarity=0.179  Sum_probs=57.9

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-----CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC---cC-C-CCccE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT---KL-E-RQFQL  233 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-----g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~---~~-~-~~fD~  233 (253)
                      ++.+|||||||+|..+..+++.     ...+|+|+|+|+.|++.|+.    .. .+++++++|+.+.   +. . .+||+
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~----~~-~~v~~~~gD~~~~~~l~~~~~~~fD~  155 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS----DM-ENITLHQGDCSDLTTFEHLREMAHPL  155 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG----GC-TTEEEEECCSSCSGGGGGGSSSCSSE
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc----cC-CceEEEECcchhHHHHHhhccCCCCE
Confidence            5679999999999999999986     23499999999999998872    12 4799999999985   42 3 47999


Q ss_pred             EEEccc
Q 025428          234 VMDKGT  239 (253)
Q Consensus       234 Vi~~~~  239 (253)
                      |++...
T Consensus       156 I~~d~~  161 (236)
T 2bm8_A          156 IFIDNA  161 (236)
T ss_dssp             EEEESS
T ss_pred             EEECCc
Confidence            997654

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.89  E-value=1.7e-10  Score=98.59  Aligned_cols=45  Identities=16%  Similarity=0.254  Sum_probs=40.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHH
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLA  207 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~  207 (253)
                      .++.+|||||||||.++..+++.|+.+|+|+|+|+.|++.++++.
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~   80 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSD   80 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTC
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhC
Confidence            456799999999999999999998679999999999999987754

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.89  E-value=2.3e-09  Score=95.71  Aligned_cols=75  Identities=13%  Similarity=0.120  Sum_probs=62.2

Q ss_pred             CEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--C-CCCccEEEEcccc
Q 025428          166 WSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLVMDKGTL  240 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~-~~~fD~Vi~~~~l  240 (253)
                      .+|||||||+|.++..++++ +..+|++||+++.|++.|++++....-.+++++++|+.++.  . +++||+|+++...
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~  169 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFA  169 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCST
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCC
Confidence            49999999999999999984 33489999999999999999976544357999999998753  2 3789999986543

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.88  E-value=1.4e-09  Score=90.46  Aligned_cols=69  Identities=17%  Similarity=0.136  Sum_probs=56.7

Q ss_pred             HHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccE
Q 025428          155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQL  233 (253)
Q Consensus       155 l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~  233 (253)
                      +++.+....++.+|||||||+|.++..++    .+++|+|+|+.               +++++++|+.+++++ ++||+
T Consensus        58 ~~~~l~~~~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~---------------~~~~~~~d~~~~~~~~~~fD~  118 (215)
T 2zfu_A           58 IARDLRQRPASLVVADFGCGDCRLASSIR----NPVHCFDLASL---------------DPRVTVCDMAQVPLEDESVDV  118 (215)
T ss_dssp             HHHHHHTSCTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS---------------STTEEESCTTSCSCCTTCEEE
T ss_pred             HHHHHhccCCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC---------------CceEEEeccccCCCCCCCEeE
Confidence            44555444567899999999999998883    48999999996               567899999998765 78999


Q ss_pred             EEEccccce
Q 025428          234 VMDKGTLDA  242 (253)
Q Consensus       234 Vi~~~~l~~  242 (253)
                      |++..++|+
T Consensus       119 v~~~~~l~~  127 (215)
T 2zfu_A          119 AVFCLSLMG  127 (215)
T ss_dssp             EEEESCCCS
T ss_pred             EEEehhccc
Confidence            999999873

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.87  E-value=5.9e-09  Score=96.54  Aligned_cols=83  Identities=13%  Similarity=0.049  Sum_probs=70.0

Q ss_pred             HHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC-CC
Q 025428          155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE-RQ  230 (253)
Q Consensus       155 l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~-~~  230 (253)
                      +...+....++.+|||+|||+|..+..++..+. .+|+++|+++.+++.+++++++.|+ +++++++|+.+++  ++ ++
T Consensus       237 ~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~-~~~~~~~D~~~~~~~~~~~~  315 (429)
T 1sqg_A          237 GCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGM-KATVKQGDGRYPSQWCGEQQ  315 (429)
T ss_dssp             THHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTC-CCEEEECCTTCTHHHHTTCC
T ss_pred             HHHHHcCCCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCC-CeEEEeCchhhchhhcccCC
Confidence            333344456788999999999999999998842 5999999999999999999999987 6899999999876  34 68


Q ss_pred             ccEEEEcc
Q 025428          231 FQLVMDKG  238 (253)
Q Consensus       231 fD~Vi~~~  238 (253)
                      ||+|+++.
T Consensus       316 fD~Vl~D~  323 (429)
T 1sqg_A          316 FDRILLDA  323 (429)
T ss_dssp             EEEEEEEC
T ss_pred             CCEEEEeC
Confidence            99999854

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.87  E-value=1.5e-10  Score=99.21  Aligned_cols=72  Identities=19%  Similarity=0.355  Sum_probs=61.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~~~  238 (253)
                      .++.+|||+|||+|.++..+++.+ .+|+|+|+|+.|++.+++++.  +..+++++++|+.+++++  ++| .|+++.
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~~~~~~~~~~f-~vv~n~  101 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDILQFQFPNKQRY-KIVGNI  101 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCTTTTCCCSSEE-EEEEEC
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChhhcCcccCCCc-EEEEeC
Confidence            467799999999999999999996 599999999999999988765  335799999999998765  578 677764

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.86  E-value=3.1e-09  Score=96.29  Aligned_cols=72  Identities=17%  Similarity=0.183  Sum_probs=61.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .+..+|||||||+|.++..++++. ..+++++|+ +.|++.|++      ..+++++.+|+.+ +++. ||+|++..+||
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~~-~D~v~~~~~lh  278 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA-SVPQ-GDAMILKAVCH  278 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT-CCCC-EEEEEEESSGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc-CCCC-CCEEEEecccc
Confidence            456899999999999999999884 237899999 999987764      2479999999988 5555 99999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ++
T Consensus       279 ~~  280 (372)
T 1fp1_D          279 NW  280 (372)
T ss_dssp             GS
T ss_pred             cC
Confidence            87

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.86  E-value=2.7e-09  Score=93.57  Aligned_cols=77  Identities=14%  Similarity=0.286  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcC----CCceEEEEeccCCCc--CCCCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTK--LERQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g----~~~i~~~~~D~~~~~--~~~~fD~Vi  235 (253)
                      .++.+|||||||+|.++..++++ +..+|+++|+++.+++.|++++...+    -.+++++++|+.+..  .+++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            35679999999999999999988 34699999999999999999876432    247999999997743  257899999


Q ss_pred             Eccc
Q 025428          236 DKGT  239 (253)
Q Consensus       236 ~~~~  239 (253)
                      ++..
T Consensus       157 ~d~~  160 (283)
T 2i7c_A          157 VDSS  160 (283)
T ss_dssp             EECC
T ss_pred             EcCC
Confidence            8654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.86  E-value=5.4e-10  Score=98.01  Aligned_cols=73  Identities=16%  Similarity=0.084  Sum_probs=56.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH-hcCCC-ceEEE--EeccCCCcCCCCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN-RDGFS-CIKFL--VDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~-~~g~~-~i~~~--~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      .++.+|||+|||+|.++..++++  .+|+|+|+++ |+..++++.. ..... ++.++  ++|+.+++ +++||+|+++.
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~-~~~fD~Vvsd~  156 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME-PFQADTVLCDI  156 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC-CCCCSEEEECC
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC-CCCcCEEEECC
Confidence            46789999999999999999998  4899999999 6543332210 01111 78999  99999875 67899999987


Q ss_pred             c
Q 025428          239 T  239 (253)
Q Consensus       239 ~  239 (253)
                      .
T Consensus       157 ~  157 (276)
T 2wa2_A          157 G  157 (276)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.86  E-value=6.2e-10  Score=97.03  Aligned_cols=72  Identities=14%  Similarity=0.038  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHH---HhcCCCceEEE--EeccCCCcCCCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLA---NRDGFSCIKFL--VDDVLDTKLERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~---~~~g~~~i~~~--~~D~~~~~~~~~fD~Vi~~  237 (253)
                      .++.+|||+|||+|.++..++++  .+|+|+|+++ |+..++++.   +..+ .++.++  ++|+.+++ +++||+|+++
T Consensus        73 ~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~-~~~fD~V~sd  147 (265)
T 2oxt_A           73 ELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTLP-VERTDVIMCD  147 (265)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTSC-CCCCSEEEEC
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHCC-CCCCcEEEEe
Confidence            56789999999999999999998  4899999999 643332211   0111 168999  99999876 6789999998


Q ss_pred             cc
Q 025428          238 GT  239 (253)
Q Consensus       238 ~~  239 (253)
                      ..
T Consensus       148 ~~  149 (265)
T 2oxt_A          148 VG  149 (265)
T ss_dssp             CC
T ss_pred             Cc
Confidence            76

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=98.85  E-value=2.5e-09  Score=98.13  Aligned_cols=75  Identities=12%  Similarity=-0.037  Sum_probs=65.9

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCc--eEEEEeccCCCcC---CCCccEEEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDDVLDTKL---ERQFQLVMD  236 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~--i~~~~~D~~~~~~---~~~fD~Vi~  236 (253)
                      ++.+|||++||+|.+++.++++  |+.+|+++|+++.+++.+++|++.+|+.+  ++++++|+.++..   .++||+|++
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l  131 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL  131 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence            5679999999999999999985  55699999999999999999999999976  9999999876532   468999998


Q ss_pred             cc
Q 025428          237 KG  238 (253)
Q Consensus       237 ~~  238 (253)
                      +.
T Consensus       132 DP  133 (392)
T 3axs_A          132 DP  133 (392)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.85  E-value=3e-09  Score=95.62  Aligned_cols=72  Identities=14%  Similarity=0.142  Sum_probs=61.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .+..+|||||||+|.++..+++. +..+++++|+ +.|++.|++.      .+++++.+|+.+ +++. ||+|++..+||
T Consensus       187 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~p~-~D~v~~~~~lh  257 (352)
T 1fp2_A          187 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS------NNLTYVGGDMFT-SIPN-ADAVLLKYILH  257 (352)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB------TTEEEEECCTTT-CCCC-CSEEEEESCGG
T ss_pred             ccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC------CCcEEEeccccC-CCCC-ccEEEeehhhc
Confidence            35679999999999999999987 3348999999 9999887652      469999999977 4554 99999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ++
T Consensus       258 ~~  259 (352)
T 1fp2_A          258 NW  259 (352)
T ss_dssp             GS
T ss_pred             cC
Confidence            87

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.84  E-value=1.6e-09  Score=93.74  Aligned_cols=80  Identities=15%  Similarity=0.091  Sum_probs=61.4

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCc--EEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCC--
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER--  229 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~--v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~--  229 (253)
                      .+++.+. ..++.+|||||||+|.++. +.+ + .+  |+|+|+++.|++.+++++...  .+++++++|+.+++++.  
T Consensus        12 ~iv~~~~-~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~   85 (252)
T 1qyr_A           12 SIVSAIN-PQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELA   85 (252)
T ss_dssp             HHHHHHC-CCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHH
T ss_pred             HHHHhcC-CCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhh
Confidence            3444443 2467899999999999999 654 4 36  999999999999999886542  48999999999876542  


Q ss_pred             ----CccEEEEccc
Q 025428          230 ----QFQLVMDKGT  239 (253)
Q Consensus       230 ----~fD~Vi~~~~  239 (253)
                          ..+.|+++..
T Consensus        86 ~~~~~~~~vvsNlP   99 (252)
T 1qyr_A           86 EKMGQPLRVFGNLP   99 (252)
T ss_dssp             HHHTSCEEEEEECC
T ss_pred             cccCCceEEEECCC
Confidence                3468887765

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.84  E-value=3.2e-09  Score=92.20  Aligned_cols=79  Identities=15%  Similarity=0.121  Sum_probs=63.0

Q ss_pred             CCC--CEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh-------cC-C-CceEEEEeccCCCc--CCC
Q 025428          163 LSS--WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANR-------DG-F-SCIKFLVDDVLDTK--LER  229 (253)
Q Consensus       163 ~~~--~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~-------~g-~-~~i~~~~~D~~~~~--~~~  229 (253)
                      .++  .+|||+|||+|..++.++..|. +|+++|+++.+++.++++++.       ++ + .+++++++|..++.  ++.
T Consensus        85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~  163 (258)
T 2oyr_A           85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP  163 (258)
T ss_dssp             BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSS
T ss_pred             cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcc
Confidence            345  7999999999999999999977 899999999887777666542       23 4 46999999998742  235


Q ss_pred             CccEEEEccccce
Q 025428          230 QFQLVMDKGTLDA  242 (253)
Q Consensus       230 ~fD~Vi~~~~l~~  242 (253)
                      +||+|+++..+.+
T Consensus       164 ~fDvV~lDP~y~~  176 (258)
T 2oyr_A          164 RPQVVYLDPMFPH  176 (258)
T ss_dssp             CCSEEEECCCCCC
T ss_pred             cCCEEEEcCCCCC
Confidence            7999999877754

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.82  E-value=3e-09  Score=94.84  Aligned_cols=77  Identities=22%  Similarity=0.380  Sum_probs=63.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc--CC--CceEEEEeccCCCc--CCCCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTK--LERQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~--g~--~~i~~~~~D~~~~~--~~~~fD~Vi  235 (253)
                      ....+|||||||+|.++..++++ +..+|+++|+++.+++.|++++...  ++  .+++++++|+.+..  .+++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            35679999999999999999988 4469999999999999999998653  33  47999999997742  247899999


Q ss_pred             Eccc
Q 025428          236 DKGT  239 (253)
Q Consensus       236 ~~~~  239 (253)
                      ++..
T Consensus       187 ~d~~  190 (314)
T 2b2c_A          187 TDSS  190 (314)
T ss_dssp             ECCC
T ss_pred             EcCC
Confidence            8664

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.82  E-value=4.5e-09  Score=85.83  Aligned_cols=69  Identities=25%  Similarity=0.285  Sum_probs=55.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CC---------CcEEEEeCCHHHHHHHHHHHHhcCCCceEEE-EeccCCCc-----
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GF---------SDLTGVDYSEDAINLAQSLANRDGFSCIKFL-VDDVLDTK-----  226 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~---------~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~-~~D~~~~~-----  226 (253)
                      .++.+|||+|||+|.++..+++. |.         .+|+|+|+|+.+           .+.+++++ ++|+.+..     
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~~   89 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQRI   89 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHHH
Confidence            46789999999999999999988 53         589999999831           23578999 99987753     


Q ss_pred             ---CC-CCccEEEEccccce
Q 025428          227 ---LE-RQFQLVMDKGTLDA  242 (253)
Q Consensus       227 ---~~-~~fD~Vi~~~~l~~  242 (253)
                         ++ ++||+|+++..+++
T Consensus        90 ~~~~~~~~fD~V~~~~~~~~  109 (196)
T 2nyu_A           90 LEVLPGRRADVILSDMAPNA  109 (196)
T ss_dssp             HHHSGGGCEEEEEECCCCCC
T ss_pred             HHhcCCCCCcEEEeCCCCCC
Confidence               22 58999999776654

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.78  E-value=3.9e-09  Score=96.65  Aligned_cols=81  Identities=16%  Similarity=0.201  Sum_probs=64.0

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCC
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLER  229 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~  229 (253)
                      ...+++.+.. .++.+|||+|||+|.++..++++  +..+++|+|+++.+++.|         .+++++++|+.+....+
T Consensus        28 ~~~~~~~~~~-~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~D~~~~~~~~   97 (421)
T 2ih2_A           28 VDFMVSLAEA-PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEPGE   97 (421)
T ss_dssp             HHHHHHHCCC-CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCCSS
T ss_pred             HHHHHHhhcc-CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeCChhhcCccC
Confidence            3344444432 34569999999999999999986  345999999999999877         37899999999876668


Q ss_pred             CccEEEEccccce
Q 025428          230 QFQLVMDKGTLDA  242 (253)
Q Consensus       230 ~fD~Vi~~~~l~~  242 (253)
                      +||+|+++..+..
T Consensus        98 ~fD~Ii~NPPy~~  110 (421)
T 2ih2_A           98 AFDLILGNPPYGI  110 (421)
T ss_dssp             CEEEEEECCCCCC
T ss_pred             CCCEEEECcCccC
Confidence            9999999876644

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.77  E-value=6.8e-09  Score=94.17  Aligned_cols=72  Identities=17%  Similarity=0.221  Sum_probs=60.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .+..+|||||||+|.++..+++. +..+++++|+ +.+++.++++      .+++++.+|+.+ +++.. |+|++..+||
T Consensus       202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~d~~~-~~p~~-D~v~~~~vlh  272 (368)
T 3reo_A          202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF------SGVEHLGGDMFD-GVPKG-DAIFIKWICH  272 (368)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCCC-SEEEEESCGG
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc------CCCEEEecCCCC-CCCCC-CEEEEechhh
Confidence            45679999999999999999987 3348999999 8899877642      479999999987 55544 9999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ++
T Consensus       273 ~~  274 (368)
T 3reo_A          273 DW  274 (368)
T ss_dssp             GB
T ss_pred             cC
Confidence            86

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.76  E-value=5.9e-09  Score=90.64  Aligned_cols=71  Identities=13%  Similarity=-0.034  Sum_probs=60.7

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc--C--CCceEEEEeccCCCcCCCCccEEEEc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--G--FSCIKFLVDDVLDTKLERQFQLVMDK  237 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~--g--~~~i~~~~~D~~~~~~~~~fD~Vi~~  237 (253)
                      ...+|||||||+|.++..+++++ .+|+++|+++.|++.|++++...  +  -++++++.+|..+..  ++||+|+++
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~--~~fD~Ii~d  146 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI--KKYDLIFCL  146 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC--CCEEEEEES
T ss_pred             CCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH--hhCCEEEEC
Confidence            45799999999999999999886 79999999999999999876431  1  247999999998875  789999986

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.76  E-value=2.1e-08  Score=90.45  Aligned_cols=79  Identities=19%  Similarity=0.121  Sum_probs=65.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      ....+|||||||+|.++..++++ +..+++..|. +.+++.|+++....+.++|+++.+|+.+.+++ .+|+|++..+||
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~~~-~~D~~~~~~vlh  255 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDPLP-EADLYILARVLH  255 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSCCC-CCSEEEEESSGG
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCCCC-CceEEEeeeecc
Confidence            35579999999999999999998 3337889997 88999999998766666899999999876544 589999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ..
T Consensus       256 ~~  257 (353)
T 4a6d_A          256 DW  257 (353)
T ss_dssp             GS
T ss_pred             cC
Confidence            75

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.75  E-value=2.8e-08  Score=97.57  Aligned_cols=79  Identities=25%  Similarity=0.264  Sum_probs=67.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC-------------------------------------------CcEEEEeCCHHH
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF-------------------------------------------SDLTGVDYSEDA  199 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~-------------------------------------------~~v~gvD~s~~~  199 (253)
                      .++..|||.+||+|.+++.++..+.                                           .+++|+|+++.|
T Consensus       189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a  268 (703)
T 3v97_A          189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV  268 (703)
T ss_dssp             CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred             CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence            5677999999999999998886521                                           379999999999


Q ss_pred             HHHHHHHHHhcCCCc-eEEEEeccCCCcCC---CCccEEEEccccc
Q 025428          200 INLAQSLANRDGFSC-IKFLVDDVLDTKLE---RQFQLVMDKGTLD  241 (253)
Q Consensus       200 l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~---~~fD~Vi~~~~l~  241 (253)
                      ++.|++|+...|+.+ ++|.++|+.++..+   ++||+|++|..+.
T Consensus       269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG  314 (703)
T 3v97_A          269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYG  314 (703)
T ss_dssp             HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCC
T ss_pred             HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCcc
Confidence            999999999999985 99999999987433   3899999987653

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.75  E-value=1e-08  Score=92.97  Aligned_cols=73  Identities=14%  Similarity=0.210  Sum_probs=61.1

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      ..+..+|||||||+|.++..+++. +..+++++|+ +.+++.|+++      .+++++.+|+.+ +++.. |+|++..+|
T Consensus       199 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~------~~v~~~~~D~~~-~~p~~-D~v~~~~vl  269 (364)
T 3p9c_A          199 FEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF------PGVTHVGGDMFK-EVPSG-DTILMKWIL  269 (364)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC------TTEEEEECCTTT-CCCCC-SEEEEESCG
T ss_pred             ccCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc------CCeEEEeCCcCC-CCCCC-CEEEehHHh
Confidence            345689999999999999999987 3348999999 8898877642      479999999988 56644 999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      |++
T Consensus       270 h~~  272 (364)
T 3p9c_A          270 HDW  272 (364)
T ss_dssp             GGS
T ss_pred             ccC
Confidence            976

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.73  E-value=7.3e-09  Score=93.03  Aligned_cols=76  Identities=16%  Similarity=0.165  Sum_probs=59.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++.. ..+++++|++ .++.  +++.+..++. +++++.+|+.+ +.+ +||+|++..+|
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~~-~~p-~~D~v~~~~vl  257 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFLR-EVP-HADVHVLKRIL  257 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTTT-CCC-CCSEEEEESCG
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCCC-CCC-CCcEEEEehhc
Confidence            456799999999999999999873 3389999994 4555  4333333433 69999999973 345 89999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      |++
T Consensus       258 h~~  260 (348)
T 3lst_A          258 HNW  260 (348)
T ss_dssp             GGS
T ss_pred             cCC
Confidence            986

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.71  E-value=1.3e-08  Score=91.56  Aligned_cols=71  Identities=17%  Similarity=0.164  Sum_probs=60.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      +..+|||||||+|.++..++++. ..+++++|+ +.+++.+++      ..+++++.+|+.+ +++ .||+|+++.+||+
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~-~~~-~~D~v~~~~vlh~  263 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK-SIP-SADAVLLKWVLHD  263 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT-CCC-CCSEEEEESCGGG
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC-CCC-CceEEEEcccccC
Confidence            56799999999999999999883 338999999 789887664      2469999999988 555 4999999999998


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      +
T Consensus       264 ~  264 (358)
T 1zg3_A          264 W  264 (358)
T ss_dssp             S
T ss_pred             C
Confidence            6

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.69  E-value=5.2e-09  Score=92.92  Aligned_cols=74  Identities=12%  Similarity=0.093  Sum_probs=56.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeC----CHHHHHHHHHHHHhcCCCceEEEEe-ccCCCcCCCCccEEEEc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDY----SEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLERQFQLVMDK  237 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~----s~~~l~~ar~~~~~~g~~~i~~~~~-D~~~~~~~~~fD~Vi~~  237 (253)
                      .++.+|||+|||+|.++..++++  .+|+|+|+    ++.+++..+  .+..+..++.++++ |+..++ .++||+|+++
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~-~~~fD~V~sd  155 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP-PERCDTLLCD  155 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC-CCCCSEEEEC
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC-cCCCCEEEEC
Confidence            46789999999999999999998  38999999    565542211  11123357999999 998874 4689999998


Q ss_pred             cccc
Q 025428          238 GTLD  241 (253)
Q Consensus       238 ~~l~  241 (253)
                      ..++
T Consensus       156 ~~~~  159 (305)
T 2p41_A          156 IGES  159 (305)
T ss_dssp             CCCC
T ss_pred             Cccc
Confidence            7654

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.62  E-value=8.9e-08  Score=91.33  Aligned_cols=93  Identities=16%  Similarity=0.110  Sum_probs=75.8

Q ss_pred             ccccchHHHHhcc---CCCCCEEEEEcCCCcHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHhcCC--CceEEEE
Q 025428          149 EDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGF--SCIKFLV  219 (253)
Q Consensus       149 ~~~~~~l~~~l~~---~~~~~~VLDiGcGtG~~~~~la~~----g~~~v~gvD~s~~~l~~ar~~~~~~g~--~~i~~~~  219 (253)
                      .++...|++++..   ..++.+|||.+||+|.++..+++.    +...++|+|+++.+++.|+.++...|+  .++.+.+
T Consensus       203 ~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I~~  282 (542)
T 3lkd_A          203 QPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFLHN  282 (542)
T ss_dssp             HHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEE
T ss_pred             HHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccceEe
Confidence            4566666666663   346779999999999999888876    234899999999999999999988888  4689999


Q ss_pred             eccCCC--c-C-CCCccEEEEccccc
Q 025428          220 DDVLDT--K-L-ERQFQLVMDKGTLD  241 (253)
Q Consensus       220 ~D~~~~--~-~-~~~fD~Vi~~~~l~  241 (253)
                      +|....  + . ..+||+|++|..+.
T Consensus       283 gDtL~~d~p~~~~~~fD~IvaNPPf~  308 (542)
T 3lkd_A          283 ADTLDEDWPTQEPTNFDGVLMNPPYS  308 (542)
T ss_dssp             SCTTTSCSCCSSCCCBSEEEECCCTT
T ss_pred             cceecccccccccccccEEEecCCcC
Confidence            999876  3 2 37899999998775

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.56  E-value=6.4e-08  Score=88.89  Aligned_cols=67  Identities=24%  Similarity=0.294  Sum_probs=53.2

Q ss_pred             CCCEEEEEcCC------CcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-------
Q 025428          164 SSWSVLDIGTG------NGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-------  228 (253)
Q Consensus       164 ~~~~VLDiGcG------tG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-------  228 (253)
                      +..+|||||||      ||..+..+++.  +..+|+|+|+|+.|.         ....+++|+++|+.++++.       
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~~~d  286 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIARRY  286 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhhccc
Confidence            56799999999      77777777764  345999999999983         1224899999999997653       


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      ++||+|++++.
T Consensus       287 ~sFDlVisdgs  297 (419)
T 3sso_A          287 GPFDIVIDDGS  297 (419)
T ss_dssp             CCEEEEEECSC
T ss_pred             CCccEEEECCc
Confidence            89999999764

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.54  E-value=8.8e-08  Score=91.37  Aligned_cols=93  Identities=12%  Similarity=0.048  Sum_probs=72.4

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc----C---------------CCcEEEEeCCHHHHHHHHHHHHhc
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ----G---------------FSDLTGVDYSEDAINLAQSLANRD  210 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~----g---------------~~~v~gvD~s~~~l~~ar~~~~~~  210 (253)
                      .+...|++++.. .++.+|||.|||+|.++..+++.    +               ...++|+|+++.+++.|+.++...
T Consensus       156 ~iv~~mv~~l~p-~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l~  234 (541)
T 2ar0_A          156 PLIKTIIHLLKP-QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLLH  234 (541)
T ss_dssp             HHHHHHHHHHCC-CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcc-CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHHh
Confidence            344445555433 46779999999999999888764    1               137999999999999999999888


Q ss_pred             CCCc-----eEEEEeccCCCcC--CCCccEEEEcccccee
Q 025428          211 GFSC-----IKFLVDDVLDTKL--ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       211 g~~~-----i~~~~~D~~~~~~--~~~fD~Vi~~~~l~~i  243 (253)
                      |+.+     +.++++|....+.  .++||+|+++..+...
T Consensus       235 gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~  274 (541)
T 2ar0_A          235 DIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSA  274 (541)
T ss_dssp             TCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTC
T ss_pred             CCCccccccCCeEeCCCcccccccccCCeEEEECCCcccc
Confidence            8765     8899999877542  3789999999877653

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.51  E-value=9.7e-08  Score=92.36  Aligned_cols=71  Identities=13%  Similarity=0.192  Sum_probs=59.3

Q ss_pred             CCEEEEEcCCCcHHHHHH---HhcCCC--cEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEE
Q 025428          165 SWSVLDIGTGNGLLLQEL---SKQGFS--DLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMD  236 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~l---a~~g~~--~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~  236 (253)
                      ...|||+|||+|.+..+.   +..+..  +|++||.|+ |...+++..+.++..+ |+++++|+++..+++++|+||+
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev~LPEKVDIIVS  434 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREWVAPEKADIIVS  434 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTCCCSSCEEEEEC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceeccCCcccCEEEE
Confidence            358999999999994444   444333  689999998 6778999988999874 9999999999999999999997

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.47  E-value=6e-08  Score=78.08  Aligned_cols=62  Identities=10%  Similarity=0.080  Sum_probs=53.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---C-CCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---E-RQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---~-~~fD~Vi~~~  238 (253)
                      .++.+|||+|||+               +++|+|+.|++.|+++...    +++++++|+.++++   + ++||+|++..
T Consensus        11 ~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~~~~~~fD~V~~~~   71 (176)
T 2ld4_A           11 SAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSAHKESSFDIILSGL   71 (176)
T ss_dssp             CTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGCCCSSCEEEEEECC
T ss_pred             CCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCccccCCCCCEeEEEECC
Confidence            5788999999996               2399999999999998632    48999999999876   4 7899999999


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      ++||+
T Consensus        72 ~l~~~   76 (176)
T 2ld4_A           72 VPGST   76 (176)
T ss_dssp             STTCC
T ss_pred             hhhhc
Confidence            99997

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=98.42  E-value=1.4e-07  Score=74.67  Aligned_cols=67  Identities=18%  Similarity=0.205  Sum_probs=52.5

Q ss_pred             hHHHHhccC-CCCCEEEEEcCCCc-HHHHHHHh-cCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--
Q 025428          154 EPVEENDKY-LSSWSVLDIGTGNG-LLLQELSK-QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--  228 (253)
Q Consensus       154 ~l~~~l~~~-~~~~~VLDiGcGtG-~~~~~la~-~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--  228 (253)
                      .|.+.+.+. ..+.+|||||||+| ..+..|++ .|+ .|+++|+++.+++               +++.|+.+..+.  
T Consensus        24 ~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~---------------~v~dDiF~P~~~~Y   87 (153)
T 2k4m_A           24 DLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG---------------IVRDDITSPRMEIY   87 (153)
T ss_dssp             HHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT---------------EECCCSSSCCHHHH
T ss_pred             HHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc---------------eEEccCCCCccccc
Confidence            344444433 44679999999999 69999997 677 8999999997655               888999886554  


Q ss_pred             CCccEEEE
Q 025428          229 RQFQLVMD  236 (253)
Q Consensus       229 ~~fD~Vi~  236 (253)
                      +.||+|.+
T Consensus        88 ~~~DLIYs   95 (153)
T 2k4m_A           88 RGAALIYS   95 (153)
T ss_dssp             TTEEEEEE
T ss_pred             CCcCEEEE
Confidence            58999965

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=98.36  E-value=1.6e-06  Score=72.42  Aligned_cols=74  Identities=15%  Similarity=0.139  Sum_probs=60.5

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC---CceEEEEeccCCC---------------
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDT---------------  225 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~---~~i~~~~~D~~~~---------------  225 (253)
                      +.++||++||  |.-+..+++....+|+.||.+++..+.|++++++.|+   .+|+++.+|+.+.               
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~~~~l  107 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGPTGDWGHPVSDAKWRSY  107 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSSBCGGGCBSSSTTGGGT
T ss_pred             CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchhhhcccccccchhhhhH
Confidence            5679999998  5788888875235999999999999999999999986   3799999997653               


Q ss_pred             c--------CC--CCccEEEEccc
Q 025428          226 K--------LE--RQFQLVMDKGT  239 (253)
Q Consensus       226 ~--------~~--~~fD~Vi~~~~  239 (253)
                      +        .+  ++||+|+..+-
T Consensus       108 ~~~~~~i~~~~~~~~fDlIfIDg~  131 (202)
T 3cvo_A          108 PDYPLAVWRTEGFRHPDVVLVDGR  131 (202)
T ss_dssp             THHHHGGGGCTTCCCCSEEEECSS
T ss_pred             HHHhhhhhccccCCCCCEEEEeCC
Confidence            1        22  68999998774

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.35  E-value=5.9e-07  Score=78.61  Aligned_cols=79  Identities=11%  Similarity=0.127  Sum_probs=63.8

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E  228 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~  228 (253)
                      ++++.+. ..++..+||.+||.|..+..+++++ .+|+|+|.++.+++.|++ ++.   .+++++++|+.++..     .
T Consensus        13 e~le~L~-~~~gg~~VD~T~G~GGHS~~il~~~-g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~g   86 (285)
T 1wg8_A           13 EALDLLA-VRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAALG   86 (285)
T ss_dssp             HHHHHHT-CCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHTT
T ss_pred             HHHHhhC-CCCCCEEEEeCCCCcHHHHHHHHCC-CEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHcC
Confidence            3344443 2577899999999999999999984 499999999999999998 644   489999999988741     2


Q ss_pred             -CCccEEEEcc
Q 025428          229 -RQFQLVMDKG  238 (253)
Q Consensus       229 -~~fD~Vi~~~  238 (253)
                       +++|.|+++-
T Consensus        87 ~~~vDgIL~DL   97 (285)
T 1wg8_A           87 VERVDGILADL   97 (285)
T ss_dssp             CSCEEEEEEEC
T ss_pred             CCCcCEEEeCC
Confidence             5799999743

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.32  E-value=4.4e-07  Score=86.57  Aligned_cols=92  Identities=15%  Similarity=0.084  Sum_probs=70.3

Q ss_pred             ccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--------C--------CCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428          149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--------G--------FSDLTGVDYSEDAINLAQSLANRDGF  212 (253)
Q Consensus       149 ~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--------g--------~~~v~gvD~s~~~l~~ar~~~~~~g~  212 (253)
                      ..+...|++++..  ...+|||.+||||.++..+++.        +        ...++|+|+++.+++.|+.++...|+
T Consensus       231 ~~Vv~lmv~ll~p--~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi  308 (544)
T 3khk_A          231 KSIVTLIVEMLEP--YKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIRGI  308 (544)
T ss_dssp             HHHHHHHHHHHCC--CSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhc--CCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHhCC
Confidence            3555666666543  2349999999999998887543        0        23799999999999999999988887


Q ss_pred             C-ceEEEEeccCCCcC--CCCccEEEEccccce
Q 025428          213 S-CIKFLVDDVLDTKL--ERQFQLVMDKGTLDA  242 (253)
Q Consensus       213 ~-~i~~~~~D~~~~~~--~~~fD~Vi~~~~l~~  242 (253)
                      . ++.+.++|....+.  ..+||+|++|..+..
T Consensus       309 ~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~  341 (544)
T 3khk_A          309 DFNFGKKNADSFLDDQHPDLRADFVMTNPPFNM  341 (544)
T ss_dssp             CCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSC
T ss_pred             CcccceeccchhcCcccccccccEEEECCCcCC
Confidence            5 35558899876653  378999999988764

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.27  E-value=1.1e-06  Score=77.41  Aligned_cols=63  Identities=16%  Similarity=0.144  Sum_probs=48.6

Q ss_pred             CCCCEEEEEcC------CCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEE-EEeccCCCcCCCCccE
Q 025428          163 LSSWSVLDIGT------GNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKF-LVDDVLDTKLERQFQL  233 (253)
Q Consensus       163 ~~~~~VLDiGc------GtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~-~~~D~~~~~~~~~fD~  233 (253)
                      .++.+|||+||      |+|.  ..+++. + ..+|+|+|+|+.             +.++++ +++|+.+++++++||+
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~~~~fD~  126 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHTANKWDL  126 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCCSSCEEE
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCccCcccE
Confidence            46789999999      4466  334443 4 248999999997             136788 9999998877789999


Q ss_pred             EEEcccc
Q 025428          234 VMDKGTL  240 (253)
Q Consensus       234 Vi~~~~l  240 (253)
                      |+++...
T Consensus       127 Vvsn~~~  133 (290)
T 2xyq_A          127 IISDMYD  133 (290)
T ss_dssp             EEECCCC
T ss_pred             EEEcCCc
Confidence            9997643

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=98.24  E-value=7.3e-07  Score=86.70  Aligned_cols=71  Identities=14%  Similarity=0.147  Sum_probs=55.4

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc----C----------CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcC--
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ----G----------FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL--  227 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~----g----------~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~--  227 (253)
                      ...|||+|||+|.++.+.+..    +          ..+|++||.|+.++...+.+.. +|+.+ |+++++|++++.+  
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccccc
Confidence            458999999999997533221    2          2299999999987765555544 77765 9999999999877  


Q ss_pred             ----CCCccEEEE
Q 025428          228 ----ERQFQLVMD  236 (253)
Q Consensus       228 ----~~~fD~Vi~  236 (253)
                          ++++|+||+
T Consensus       489 ~~~~~ekVDIIVS  501 (745)
T 3ua3_A          489 KDRGFEQPDIIVS  501 (745)
T ss_dssp             HHTTCCCCSEEEE
T ss_pred             ccCCCCcccEEEE
Confidence                689999998

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=98.17  E-value=4.7e-06  Score=73.24  Aligned_cols=47  Identities=26%  Similarity=0.237  Sum_probs=43.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~  210 (253)
                      .++..|||++||+|..+..++..|. +++|+|+++.+++.|++++...
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~~  280 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFARE  280 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            4788999999999999999999976 9999999999999999998764

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=98.16  E-value=2.8e-06  Score=83.83  Aligned_cols=93  Identities=13%  Similarity=-0.040  Sum_probs=66.2

Q ss_pred             ccccchHHHH----hcc-CCCCCEEEEEcCCCcHHHHHHHhcC----CCcEEEEeCCHHHHHHH--HHHHHh----cCCC
Q 025428          149 EDLKSEPVEE----NDK-YLSSWSVLDIGTGNGLLLQELSKQG----FSDLTGVDYSEDAINLA--QSLANR----DGFS  213 (253)
Q Consensus       149 ~~~~~~l~~~----l~~-~~~~~~VLDiGcGtG~~~~~la~~g----~~~v~gvD~s~~~l~~a--r~~~~~----~g~~  213 (253)
                      .++...++.+    +.. ..++.+|||.|||+|.++..+++..    ..+++|+|+++.+++.|  +.++..    .++.
T Consensus       301 ~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~  380 (878)
T 3s1s_A          301 IELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNN  380 (878)
T ss_dssp             HHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTB
T ss_pred             HHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCC
Confidence            3445555555    222 1357799999999999999999872    13799999999999999  555544    2333


Q ss_pred             ceEEEEeccCCCc--CCCCccEEEEccccc
Q 025428          214 CIKFLVDDVLDTK--LERQFQLVMDKGTLD  241 (253)
Q Consensus       214 ~i~~~~~D~~~~~--~~~~fD~Vi~~~~l~  241 (253)
                      +..+...|+....  ..++||+|++|..+-
T Consensus       381 ~~~I~~dD~L~~~~~~~~kFDVVIgNPPYg  410 (878)
T 3s1s_A          381 APTITGEDVCSLNPEDFANVSVVVMNPPYV  410 (878)
T ss_dssp             CCEEECCCGGGCCGGGGTTEEEEEECCBCC
T ss_pred             cceEEecchhcccccccCCCCEEEECCCcc
Confidence            4566777777643  237899999998773

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.13  E-value=3.1e-06  Score=76.73  Aligned_cols=72  Identities=13%  Similarity=0.100  Sum_probs=57.9

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      +.++.+|||+||++|.++..++++|. +|++||+.+ |-....      ...+|+++++|+....++ ++||+|+|..+.
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~-l~~~l~------~~~~V~~~~~d~~~~~~~~~~~D~vvsDm~~  280 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGP-MAQSLM------DTGQVTWLREDGFKFRPTRSNISWMVCDMVE  280 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSC-CCHHHH------TTTCEEEECSCTTTCCCCSSCEEEEEECCSS
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhh-cChhhc------cCCCeEEEeCccccccCCCCCcCEEEEcCCC
Confidence            35789999999999999999999976 999999875 222111      224799999999998765 689999998765


Q ss_pred             c
Q 025428          241 D  241 (253)
Q Consensus       241 ~  241 (253)
                      .
T Consensus       281 ~  281 (375)
T 4auk_A          281 K  281 (375)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=98.00  E-value=1.2e-05  Score=76.46  Aligned_cols=92  Identities=20%  Similarity=0.131  Sum_probs=71.7

Q ss_pred             ccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc----C----------CCcEEEEeCCHHHHHHHHHHHHhcCCCc
Q 025428          149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ----G----------FSDLTGVDYSEDAINLAQSLANRDGFSC  214 (253)
Q Consensus       149 ~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~----g----------~~~v~gvD~s~~~l~~ar~~~~~~g~~~  214 (253)
                      .++...|++++.. ..+.+|+|.+||||.++..+.++    +          ...++|+|+++.+...|+.++...|+..
T Consensus       203 ~~Vv~lmv~l~~p-~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~lhg~~~  281 (530)
T 3ufb_A          203 RPVVRFMVEVMDP-QLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLLHGLEY  281 (530)
T ss_dssp             HHHHHHHHHHHCC-CTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHHHTCSC
T ss_pred             HHHHHHHHHhhcc-CCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHhcCCcc
Confidence            3555556665544 56779999999999999877653    1          1369999999999999999998888877


Q ss_pred             eEEEEeccCCCcC-----CCCccEEEEccccc
Q 025428          215 IKFLVDDVLDTKL-----ERQFQLVMDKGTLD  241 (253)
Q Consensus       215 i~~~~~D~~~~~~-----~~~fD~Vi~~~~l~  241 (253)
                      ..+.++|....+.     ..+||+|++|..+.
T Consensus       282 ~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~  313 (530)
T 3ufb_A          282 PRIDPENSLRFPLREMGDKDRVDVILTNPPFG  313 (530)
T ss_dssp             CEEECSCTTCSCGGGCCGGGCBSEEEECCCSS
T ss_pred             ccccccccccCchhhhcccccceEEEecCCCC
Confidence            7888899876543     15799999998774

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.96  E-value=4.8e-05  Score=66.96  Aligned_cols=76  Identities=20%  Similarity=0.377  Sum_probs=63.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc--C---CCceEEEEeccCCCcC--CCCccEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--G---FSCIKFLVDDVLDTKL--ERQFQLV  234 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~--g---~~~i~~~~~D~~~~~~--~~~fD~V  234 (253)
                      ...++||-||.|.|..+..++++ +..+|+.|||++.+++.|++.+...  +   -++++++.+|....-.  .++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            45689999999999999999998 5569999999999999999976431  2   1379999999998753  3789999


Q ss_pred             EEcc
Q 025428          235 MDKG  238 (253)
Q Consensus       235 i~~~  238 (253)
                      +...
T Consensus       162 i~D~  165 (294)
T 3o4f_A          162 ISDC  165 (294)
T ss_dssp             EESC
T ss_pred             EEeC
Confidence            9754

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.95  E-value=1.8e-05  Score=71.66  Aligned_cols=91  Identities=15%  Similarity=-0.022  Sum_probs=75.0

Q ss_pred             ccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCC------CceEEEEeccC
Q 025428          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGF------SCIKFLVDDVL  223 (253)
Q Consensus       151 ~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~------~~i~~~~~D~~  223 (253)
                      ..+.+...+..+.++.+|||+++|.|.-+..++..+. ..|+++|+++..++..++++++.+.      .++.+.+.|..
T Consensus       135 ~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~  214 (359)
T 4fzv_A          135 AASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGR  214 (359)
T ss_dssp             GGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGG
T ss_pred             HHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchh
Confidence            4666777777888999999999999999999998843 2799999999999999999988765      36888999988


Q ss_pred             CCc--CCCCccEEEEccccc
Q 025428          224 DTK--LERQFQLVMDKGTLD  241 (253)
Q Consensus       224 ~~~--~~~~fD~Vi~~~~l~  241 (253)
                      .++  ..++||.|++.....
T Consensus       215 ~~~~~~~~~fD~VLlDaPCS  234 (359)
T 4fzv_A          215 KWGELEGDTYDRVLVDVPCT  234 (359)
T ss_dssp             GHHHHSTTCEEEEEEECCCC
T ss_pred             hcchhccccCCEEEECCccC
Confidence            764  347899999866543

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=97.74  E-value=5e-05  Score=65.37  Aligned_cols=49  Identities=24%  Similarity=0.209  Sum_probs=43.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF  212 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~  212 (253)
                      .++..|||.+||+|..+....+.|. +++|+|+++.+++.+++|++.+++
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHhccC
Confidence            4788999999999999999999965 999999999999999999876654

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=97.70  E-value=1.3e-05  Score=69.83  Aligned_cols=77  Identities=18%  Similarity=0.157  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++.+|||+|||+|.++..++.+ +...++|+|++..+....+.. ...+. ++.+++.++....++ ++||+|++....
T Consensus        73 ~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~-~~~g~-~ii~~~~~~dv~~l~~~~~DlVlsD~ap  150 (277)
T 3evf_A           73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNV-QSLGW-NIITFKDKTDIHRLEPVKCDTLLCDIGE  150 (277)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCC-CBTTG-GGEEEECSCCTTTSCCCCCSEEEECCCC
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCccccccc-CcCCC-CeEEEeccceehhcCCCCccEEEecCcc
Confidence            46679999999999999998876 566889999885431111100 01121 556667765444444 789999998866


Q ss_pred             c
Q 025428          241 D  241 (253)
Q Consensus       241 ~  241 (253)
                      +
T Consensus       151 n  151 (277)
T 3evf_A          151 S  151 (277)
T ss_dssp             C
T ss_pred             C
Confidence            6

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=97.66  E-value=1.3e-05  Score=69.77  Aligned_cols=76  Identities=12%  Similarity=0.004  Sum_probs=50.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEe--ccCCCcCCCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD--DVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~--D~~~~~~~~~fD~Vi~~~~  239 (253)
                      .++.+|||||||+|.++..++.. +...|+|+|++..+...+... +..+ .++..+..  |+..+ .+.++|+|+|...
T Consensus        89 k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~-~~~g-~~ii~~~~~~dv~~l-~~~~~DvVLSDmA  165 (282)
T 3gcz_A           89 KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMR-TTLG-WNLIRFKDKTDVFNM-EVIPGDTLLCDIG  165 (282)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCC-CBTT-GGGEEEECSCCGGGS-CCCCCSEEEECCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCcccccccc-ccCC-CceEEeeCCcchhhc-CCCCcCEEEecCc
Confidence            56679999999999999998865 666899999987643222110 0112 14444443  44333 2378999999887


Q ss_pred             cc
Q 025428          240 LD  241 (253)
Q Consensus       240 l~  241 (253)
                      .+
T Consensus       166 pn  167 (282)
T 3gcz_A          166 ES  167 (282)
T ss_dssp             CC
T ss_pred             cC
Confidence            66

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.60  E-value=1.6e-05  Score=67.67  Aligned_cols=74  Identities=14%  Similarity=0.166  Sum_probs=54.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEe-ccCCCcCCCCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~-D~~~~~~~~~fD~Vi~~~  238 (253)
                      .++.+|||+||++|.++.+.+.+ |..+|+|+|+-..-.+. -...+..|...++|.++ |+..++. .++|+|+|..
T Consensus        77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~~~-~~~DtllcDI  152 (267)
T 3p8z_A           77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYLPP-EKCDTLLCDI  152 (267)
T ss_dssp             CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGCCC-CCCSEEEECC
T ss_pred             CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeecCC-ccccEEEEec
Confidence            56779999999999999988877 77799999997632210 00112345556999999 9866643 6799999854

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=97.53  E-value=0.00021  Score=62.56  Aligned_cols=77  Identities=10%  Similarity=-0.019  Sum_probs=60.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc----C--CCcEEEEeCCHH--------------------------HHHHHHHHHHhc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ----G--FSDLTGVDYSED--------------------------AINLAQSLANRD  210 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~----g--~~~v~gvD~s~~--------------------------~l~~ar~~~~~~  210 (253)
                      ...+.||++||.+|..+..++..    +  ..+|+++|..+.                          .++.+++++++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            45679999999999999887653    1  348999996421                          478899999999


Q ss_pred             CC--CceEEEEeccCCCc--C-CCCccEEEEccc
Q 025428          211 GF--SCIKFLVDDVLDTK--L-ERQFQLVMDKGT  239 (253)
Q Consensus       211 g~--~~i~~~~~D~~~~~--~-~~~fD~Vi~~~~  239 (253)
                      |+  .+|+++.||+.+..  . .++||+|+...-
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD  218 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGD  218 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEECCC
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCC
Confidence            98  57999999997642  2 368999997653

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.45  E-value=0.00028  Score=63.13  Aligned_cols=80  Identities=15%  Similarity=0.041  Sum_probs=61.4

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----  227 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----  227 (253)
                      ++++.+. ..++..+||..||.|..+..+++. | ..+|+|+|.++.+++.++ ++   .-.+++++++++.++..    
T Consensus        48 Evl~~L~-i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l~~~L~~  122 (347)
T 3tka_A           48 EAVNGLN-IRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSALGEYVAE  122 (347)
T ss_dssp             HHHHHTC-CCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGHHHHHHH
T ss_pred             HHHHhhC-CCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHHHHHHHh
Confidence            3444443 257889999999999999999987 3 348999999999999995 44   22479999999988741    


Q ss_pred             ---CCCccEEEEcc
Q 025428          228 ---ERQFQLVMDKG  238 (253)
Q Consensus       228 ---~~~fD~Vi~~~  238 (253)
                         .+++|.|+.+-
T Consensus       123 ~g~~~~vDgILfDL  136 (347)
T 3tka_A          123 RDLIGKIDGILLDL  136 (347)
T ss_dssp             TTCTTCEEEEEEEC
T ss_pred             cCCCCcccEEEECC
Confidence               13699988754

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.41  E-value=0.00017  Score=63.30  Aligned_cols=75  Identities=15%  Similarity=0.160  Sum_probs=52.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEe-ccCCCcCCCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD-DVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~-D~~~~~~~~~fD~Vi~~~~  239 (253)
                      .++.+||||||++|.++.+.+.+ |...|+|+|+-..-.+.= ...+..+...+.++.+ |+..++. .++|+|+|.-.
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w~lV~~~~~~Dv~~l~~-~~~D~ivcDig  169 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGWNIVTMKSGVDVFYRPS-ECCDTLLCDIG  169 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTGGGEEEECSCCTTSSCC-CCCSEEEECCC
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCCcceEEEeccCHhhCCC-CCCCEEEEECc
Confidence            56779999999999999988877 777899999976411000 0001122223788887 8877754 67999998643

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=97.35  E-value=0.00028  Score=64.12  Aligned_cols=76  Identities=22%  Similarity=0.344  Sum_probs=60.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc---CC-----CceEEEEeccCCCc-----CCC
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD---GF-----SCIKFLVDDVLDTK-----LER  229 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~---g~-----~~i~~~~~D~~~~~-----~~~  229 (253)
                      .+.++||-||.|.|..+..+++++.++|+.|||++.+++.|++.+...   ..     ++++++.+|....-     -.+
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~  283 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR  283 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred             CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence            356799999999999999999987779999999999999999975321   11     24899999987653     136


Q ss_pred             CccEEEEcc
Q 025428          230 QFQLVMDKG  238 (253)
Q Consensus       230 ~fD~Vi~~~  238 (253)
                      +||+|+...
T Consensus       284 ~yDvIIvDl  292 (381)
T 3c6k_A          284 EFDYVINDL  292 (381)
T ss_dssp             CEEEEEEEC
T ss_pred             ceeEEEECC
Confidence            899999764

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.35  E-value=0.00041  Score=62.59  Aligned_cols=74  Identities=14%  Similarity=0.079  Sum_probs=57.1

Q ss_pred             cccchHHHHhccCC-----CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccC
Q 025428          150 DLKSEPVEENDKYL-----SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVL  223 (253)
Q Consensus       150 ~~~~~l~~~l~~~~-----~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~  223 (253)
                      .+...+++.+....     ++..|||||.|.|.++..|+.. ..++|+++|+++.++...++.. .  ..+++++++|+.
T Consensus        39 ~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~--~~~l~ii~~D~l  115 (353)
T 1i4w_A           39 TVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-E--GSPLQILKRDPY  115 (353)
T ss_dssp             HHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-T--TSSCEEECSCTT
T ss_pred             HHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-c--CCCEEEEECCcc
Confidence            34445555554211     3579999999999999999986 3458999999999999998876 2  258999999997


Q ss_pred             CCc
Q 025428          224 DTK  226 (253)
Q Consensus       224 ~~~  226 (253)
                      .+.
T Consensus       116 ~~~  118 (353)
T 1i4w_A          116 DWS  118 (353)
T ss_dssp             CHH
T ss_pred             chh
Confidence            653

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.20  E-value=0.00022  Score=61.52  Aligned_cols=75  Identities=16%  Similarity=0.240  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-------CC------CcEEEEeCCH---HHHH-----------HHHHHHHh-------
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-------GF------SDLTGVDYSE---DAIN-----------LAQSLANR-------  209 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-------g~------~~v~gvD~s~---~~l~-----------~ar~~~~~-------  209 (253)
                      +..+|||+|+|+|..+..++..       +.      .+++++|..+   +++.           .++++++.       
T Consensus        60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g  139 (257)
T 2qy6_A           60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG  139 (257)
T ss_dssp             SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred             CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence            4569999999999998876542       11      3899999876   5555           55665543       


Q ss_pred             -------cCCCceEEEEeccCCC-c-CCC----CccEEEEcc
Q 025428          210 -------DGFSCIKFLVDDVLDT-K-LER----QFQLVMDKG  238 (253)
Q Consensus       210 -------~g~~~i~~~~~D~~~~-~-~~~----~fD~Vi~~~  238 (253)
                             .+..+++++.+|+.+. + .+.    .||+|+..+
T Consensus       140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~  181 (257)
T 2qy6_A          140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG  181 (257)
T ss_dssp             EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS
T ss_pred             hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC
Confidence                   1223688999998874 2 222    799999864

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.14  E-value=0.0013  Score=59.80  Aligned_cols=84  Identities=13%  Similarity=0.115  Sum_probs=52.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc------------C---C-CcEEEEeCCHHHHHHHHHHHHhc-------------CCCc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ------------G---F-SDLTGVDYSEDAINLAQSLANRD-------------GFSC  214 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~------------g---~-~~v~gvD~s~~~l~~ar~~~~~~-------------g~~~  214 (253)
                      +..+|+|+|||+|..+..+...            |   . -+|+..|+-.+.-...-+.+...             +...
T Consensus        52 ~~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~  131 (374)
T 3b5i_A           52 PPFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRS  131 (374)
T ss_dssp             CCEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBC
T ss_pred             CceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCc
Confidence            3579999999999999887321            1   1 16777787666554443333211             0001


Q ss_pred             --eEEEEeccCCCcCC-CCccEEEEccccceeccCC
Q 025428          215 --IKFLVDDVLDTKLE-RQFQLVMDKGTLDAIGLHP  247 (253)
Q Consensus       215 --i~~~~~D~~~~~~~-~~fD~Vi~~~~l~~i~~~p  247 (253)
                        +.-+-+.+..-.++ ++||+|+++.+|||+.-.|
T Consensus       132 ~f~~gvpgSFy~rlfP~~S~d~v~Ss~aLHWls~~p  167 (374)
T 3b5i_A          132 YFVAGVPGSFYRRLFPARTIDFFHSAFSLHWLSQVP  167 (374)
T ss_dssp             SEEEEEESCTTSCCSCTTCEEEEEEESCTTBCSSCC
T ss_pred             eEEEecChhhhcccCCCcceEEEEecceeeeeccCc
Confidence              22233333333444 8999999999999996555

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.01  E-value=0.0012  Score=59.84  Aligned_cols=72  Identities=18%  Similarity=0.165  Sum_probs=58.7

Q ss_pred             CEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------CCCccEEEE
Q 025428          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------ERQFQLVMD  236 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~~~fD~Vi~  236 (253)
                      .++||+.||.|.++.-+...|+..+.++|+++.+++..+.|.     .+..++++|+.++..         ...+|+|+.
T Consensus         3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~g   77 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIG   77 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEE
T ss_pred             CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHhhcccCCCeeEEEe
Confidence            489999999999999999999977889999999998888764     356788999988742         257999987


Q ss_pred             ccccce
Q 025428          237 KGTLDA  242 (253)
Q Consensus       237 ~~~l~~  242 (253)
                      ......
T Consensus        78 gpPCQ~   83 (376)
T 3g7u_A           78 GPPCQG   83 (376)
T ss_dssp             CCCCCT
T ss_pred             cCCCCC
Confidence            655443

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.00  E-value=0.00058  Score=61.17  Aligned_cols=73  Identities=14%  Similarity=0.190  Sum_probs=57.1

Q ss_pred             CEEEEEcCCCcHHHHHHHhcC--CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---C-CCccEEEEccc
Q 025428          166 WSVLDIGTGNGLLLQELSKQG--FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---E-RQFQLVMDKGT  239 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g--~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---~-~~fD~Vi~~~~  239 (253)
                      .+|||+.||.|.++..+...|  +..|+++|+++.+++..+.|..     +..++++|+.++..   + ..+|+++....
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~~~~~~D~l~~gpP   77 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEFDRLSFDMILMSPP   77 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHcCcCCcCEEEEcCC
Confidence            489999999999999999988  5589999999999999998853     34578899988742   1 26899998766


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      ...+
T Consensus        78 Cq~f   81 (343)
T 1g55_A           78 CQPF   81 (343)
T ss_dssp             ----
T ss_pred             Ccch
Confidence            5444

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.97  E-value=0.0019  Score=57.47  Aligned_cols=73  Identities=11%  Similarity=0.085  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEEccccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTLD  241 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~~~~l~  241 (253)
                      ...++||+.||.|.++..+...|+..+.++|+++.+++..+.|....    .   ++|+.++...  ..+|+|+......
T Consensus        10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~----~---~~Di~~~~~~~~~~~D~l~~gpPCQ   82 (327)
T 2c7p_A           10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK----P---EGDITQVNEKTIPDHDILCAGFPCQ   82 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC----C---BSCGGGSCGGGSCCCSEEEEECCCT
T ss_pred             CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCC----C---cCCHHHcCHhhCCCCCEEEECCCCC
Confidence            35699999999999999999999988999999999999999886321    1   6888876532  4689999876655


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      .+
T Consensus        83 ~f   84 (327)
T 2c7p_A           83 AF   84 (327)
T ss_dssp             TT
T ss_pred             Cc
Confidence            54

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=96.92  E-value=0.0002  Score=63.59  Aligned_cols=61  Identities=8%  Similarity=-0.062  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  225 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~  225 (253)
                      .++..|||..||+|..+......|. +.+|+|+++..++.+++++...+. ....++.|+.++
T Consensus       251 ~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~~~~-~~~~~~~~~~~i  311 (323)
T 1boo_A          251 EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNNI-SEEKITDIYNRI  311 (323)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSCS-CHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHhccc-chHHHHHHHHHH
Confidence            4788999999999999999999965 999999999999999999876654 344455555544

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=96.90  E-value=0.00034  Score=61.37  Aligned_cols=76  Identities=16%  Similarity=0.106  Sum_probs=48.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEe--ccCCCcCCCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVD--DVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~--D~~~~~~~~~fD~Vi~~~~  239 (253)
                      .++.+|||+||++|.++..++++ +...|+|+|+...+....+. ....+. ++.....  |+..+ .+.++|+|++...
T Consensus        80 ~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~-~iv~~~~~~di~~l-~~~~~DlVlsD~A  156 (300)
T 3eld_A           80 RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGW-NIVKFKDKSNVFTM-PTEPSDTLLCDIG  156 (300)
T ss_dssp             CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTG-GGEEEECSCCTTTS-CCCCCSEEEECCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCC-ceEEeecCceeeec-CCCCcCEEeecCc
Confidence            57789999999999999999986 66689999997643111000 000111 3333333  33332 2378999999876


Q ss_pred             cc
Q 025428          240 LD  241 (253)
Q Consensus       240 l~  241 (253)
                      .+
T Consensus       157 Pn  158 (300)
T 3eld_A          157 ES  158 (300)
T ss_dssp             CC
T ss_pred             CC
Confidence            55

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=96.87  E-value=0.0031  Score=57.44  Aligned_cols=81  Identities=10%  Similarity=-0.015  Sum_probs=54.6

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc--------------C---C-CcEEEEeCC-----------HHHHHHHHHHHHhcCC-Cc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ--------------G---F-SDLTGVDYS-----------EDAINLAQSLANRDGF-SC  214 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~--------------g---~-~~v~gvD~s-----------~~~l~~ar~~~~~~g~-~~  214 (253)
                      ..+|+|+||++|..++.+...              +   . -+|+..|+-           +.+.+..++.   .|- .+
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~---~g~~~~  129 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKE---NGRKIG  129 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHH---TCCCTT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhh---ccCCCC
Confidence            468999999999998877754              0   1 168888887           5444443222   221 13


Q ss_pred             eEEEEeccCC---CcCC-CCccEEEEccccceeccCCC
Q 025428          215 IKFLVDDVLD---TKLE-RQFQLVMDKGTLDAIGLHPD  248 (253)
Q Consensus       215 i~~~~~D~~~---~~~~-~~fD~Vi~~~~l~~i~~~pd  248 (253)
                      .-|+.+.-..   -.++ ++||+|+++.+|||+.-.|.
T Consensus       130 ~~f~~gvpgSFy~rlfp~~S~d~v~Ss~aLHWls~~p~  167 (384)
T 2efj_A          130 SCLIGAMPGSFYSRLFPEESMHFLHSCYCLHWLSQVPS  167 (384)
T ss_dssp             SEEEEECCSCTTSCCSCTTCEEEEEEESCTTBCSSSCC
T ss_pred             ceEEEecchhhhhccCCCCceEEEEecceeeecCCCch
Confidence            3566654433   3455 89999999999999976664

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.54  E-value=0.00057  Score=58.82  Aligned_cols=74  Identities=12%  Similarity=0.148  Sum_probs=45.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHh-cCCCceEEEEe-ccCCCcCCCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVD-DVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~-~g~~~i~~~~~-D~~~~~~~~~fD~Vi~~~~  239 (253)
                      +++.+|||+||+.|.++..+++. +...|.|.++.... . ....... .|..-++|+++ |+.++. +.++|+|+|...
T Consensus        72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~P~~~~~~Gv~~i~~~~G~Df~~~~-~~~~DvVLSDMA  148 (269)
T 2px2_A           72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EEPMLMQSYGWNIVTMKSGVDVFYKP-SEISDTLLCDIG  148 (269)
T ss_dssp             CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CCCCCCCSTTGGGEEEECSCCGGGSC-CCCCSEEEECCC
T ss_pred             CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cCCCcccCCCceEEEeeccCCccCCC-CCCCCEEEeCCC
Confidence            57889999999999999999987 22233444443320 0 0000000 12212466667 998753 468999999753

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.49  E-value=0.0066  Score=55.54  Aligned_cols=63  Identities=21%  Similarity=0.204  Sum_probs=51.2

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHH-hc-C-CCcEEEEeCCHHHHHHHHHHHHh---cCC-CceEEEEeccCC
Q 025428          162 YLSSWSVLDIGTGNGLLLQELS-KQ-G-FSDLTGVDYSEDAINLAQSLANR---DGF-SCIKFLVDDVLD  224 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la-~~-g-~~~v~gvD~s~~~l~~ar~~~~~---~g~-~~i~~~~~D~~~  224 (253)
                      ..++..++|+|++.|.++..++ +. + ..+|+++|.++...+..+++++.   ++. .++++++.-+-+
T Consensus       224 l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~  293 (409)
T 2py6_A          224 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE  293 (409)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred             cCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence            3578899999999999999988 44 3 25999999999999999999987   345 678877655543

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=96.44  E-value=0.0018  Score=58.46  Aligned_cols=85  Identities=11%  Similarity=0.082  Sum_probs=59.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc------------C---C--CcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEe---cc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ------------G---F--SDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVD---DV  222 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~------------g---~--~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~---D~  222 (253)
                      ..-+|+|+||++|..++.+...            +   .  -+|+..|+..+......+.+....- .+.-|+.+   .+
T Consensus        51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF  130 (359)
T ss_dssp             SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred             CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence            3468999999999877665543            2   1  1789999999888888776643110 02244444   44


Q ss_pred             CCCcCC-CCccEEEEccccceeccCCC
Q 025428          223 LDTKLE-RQFQLVMDKGTLDAIGLHPD  248 (253)
Q Consensus       223 ~~~~~~-~~fD~Vi~~~~l~~i~~~pd  248 (253)
                      ..-.++ +++|+|+++.+|||+.-.|+
T Consensus       131 y~rlfp~~S~d~v~Ss~aLHWls~~p~  157 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSYSLMWLSQVPI  157 (359)
T ss_dssp             SSCCSCTTCBSCEEEESCTTBCSSCCS
T ss_pred             hhccCCCCceEEEEehhhhhhcccCch
Confidence            444555 89999999999999976553

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=96.37  E-value=0.0049  Score=54.62  Aligned_cols=48  Identities=19%  Similarity=0.234  Sum_probs=41.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCH---HHHHHHHHHHHhcC
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSE---DAINLAQSLANRDG  211 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~---~~l~~ar~~~~~~g  211 (253)
                      .++..|||..||+|..+......|. +.+|+|+++   ..++.+++|+...+
T Consensus       241 ~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          241 HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHHcc
Confidence            4788999999999999999999965 999999999   99999999987654

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=96.30  E-value=0.0008  Score=58.74  Aligned_cols=75  Identities=11%  Similarity=0.005  Sum_probs=60.9

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC-----cCCCCccEEEEcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-----KLERQFQLVMDKG  238 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~-----~~~~~fD~Vi~~~  238 (253)
                      .+..+||+-+|||.+++.+.+. ..+++.+|.++..++..++|++.  ..++++++.|....     +...+||+|++..
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS~-~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~~~~fdLVfiDP  167 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPPPEKRGLIFIDP  167 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSCTTSCEEEEECC
T ss_pred             cCCCceeEeCCcHHHHHHHcCC-CCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCCCCCccEEEECC
Confidence            4567999999999999999996 47999999999999999998865  24799999997553     1225799999866


Q ss_pred             ccc
Q 025428          239 TLD  241 (253)
Q Consensus       239 ~l~  241 (253)
                      .+.
T Consensus       168 PYe  170 (283)
T 2oo3_A          168 SYE  170 (283)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            554

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=96.19  E-value=0.009  Score=52.50  Aligned_cols=70  Identities=14%  Similarity=0.218  Sum_probs=56.7

Q ss_pred             EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEEccccce
Q 025428          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTLDA  242 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~~~~l~~  242 (253)
                      +|||+.||.|.+..-|-..|+.-+.++|+++.+++.-+.|.      .-.++++|+.++...  ...|+++......-
T Consensus         2 kvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~------~~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~   73 (331)
T 3ubt_Y            2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH------SAKLIKGDISKISSDEFPKCDGIIGGPPSQS   73 (331)
T ss_dssp             EEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHC------CSEEEESCGGGCCGGGSCCCSEEECCCCGGG
T ss_pred             eEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC------CCCcccCChhhCCHhhCCcccEEEecCCCCC
Confidence            79999999999999998889978889999999988888764      236788999887643  56898886554443

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.12  E-value=0.028  Score=49.19  Aligned_cols=76  Identities=20%  Similarity=0.202  Sum_probs=60.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCc--EEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---C--CCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSD--LTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---E--RQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~--v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---~--~~fD~Vi  235 (253)
                      ....++||+.||.|.+...+...|+..  |.++|+++.+++.-+.|.     .+..++.+|+.++..   +  ..+|+++
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i~~~~~~Dll~   88 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHIQEWGPFDLVI   88 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHHHHTCCCSEEE
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHhcccCCcCEEE
Confidence            355699999999999999999999865  699999999988777664     245688899988752   1  4699999


Q ss_pred             Ecccccee
Q 025428          236 DKGTLDAI  243 (253)
Q Consensus       236 ~~~~l~~i  243 (253)
                      .......+
T Consensus        89 ggpPCQ~f   96 (295)
T 2qrv_A           89 GGSPCNDL   96 (295)
T ss_dssp             ECCCCGGG
T ss_pred             ecCCCccc
Confidence            87666555

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.34  E-value=0.025  Score=50.36  Aligned_cols=73  Identities=11%  Similarity=0.126  Sum_probs=56.8

Q ss_pred             CEEEEEcCCCcHHHHHHHhcCC--CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---C-CCccEEEEccc
Q 025428          166 WSVLDIGTGNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---E-RQFQLVMDKGT  239 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g~--~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---~-~~fD~Vi~~~~  239 (253)
                      -+++|+.||.|.+..-+...|+  ..|.++|+++.+++.-+.|..     +..++++|+.++..   + ..+|+++....
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~~~~~~D~l~ggpP   78 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVIKKWNVDTILMSPP   78 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHHHHTTCCEEEECCC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHhccCCCCEEEecCC
Confidence            3799999999999999988876  568899999999988887752     34567889988753   2 36899987655


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      ...+
T Consensus        79 CQ~f   82 (333)
T 4h0n_A           79 CQPF   82 (333)
T ss_dssp             CCCS
T ss_pred             Ccch
Confidence            4433

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.23  E-value=0.032  Score=49.56  Aligned_cols=74  Identities=12%  Similarity=0.063  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCC--CcE-EEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---C-CCccEEEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGF--SDL-TGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---E-RQFQLVMD  236 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~--~~v-~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---~-~~fD~Vi~  236 (253)
                      ..-+++|+.||.|.+..-+...|+  ..+ .++|+++.+++.-+.|...     . ++++|+.++..   + ..+|+++.
T Consensus         9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~-----~-~~~~DI~~~~~~~i~~~~~Dil~g   82 (327)
T 3qv2_A            9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE-----E-VQVKNLDSISIKQIESLNCNTWFM   82 (327)
T ss_dssp             CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC-----C-CBCCCTTTCCHHHHHHTCCCEEEE
T ss_pred             CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC-----C-cccCChhhcCHHHhccCCCCEEEe
Confidence            345899999999999999998884  566 7999999999988888632     1 56789888753   2 36899987


Q ss_pred             cccccee
Q 025428          237 KGTLDAI  243 (253)
Q Consensus       237 ~~~l~~i  243 (253)
                      ......+
T Consensus        83 gpPCQ~f   89 (327)
T 3qv2_A           83 SPPCQPY   89 (327)
T ss_dssp             CCCCTTC
T ss_pred             cCCccCc
Confidence            6554433

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=94.27  E-value=0.09  Score=46.18  Aligned_cols=66  Identities=14%  Similarity=0.098  Sum_probs=45.2

Q ss_pred             CCCCEEEEEcC------CCcHHHHHHHhcCC--CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEE
Q 025428          163 LSSWSVLDIGT------GNGLLLQELSKQGF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLV  234 (253)
Q Consensus       163 ~~~~~VLDiGc------GtG~~~~~la~~g~--~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~V  234 (253)
                      +.+.+|||+|+      -.|..  .+.+.+.  ..|+++|+.+-.           ...+ .++++|+......++||+|
T Consensus       108 p~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-----------sda~-~~IqGD~~~~~~~~k~DLV  173 (344)
T 3r24_A          108 PYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-----------SDAD-STLIGDCATVHTANKWDLI  173 (344)
T ss_dssp             CTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-----------CSSS-EEEESCGGGEEESSCEEEE
T ss_pred             cCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-----------cCCC-eEEEccccccccCCCCCEE
Confidence            57889999996      55663  3333322  289999998821           1113 4599998776666899999


Q ss_pred             EEccccce
Q 025428          235 MDKGTLDA  242 (253)
Q Consensus       235 i~~~~l~~  242 (253)
                      ++...-..
T Consensus       174 ISDMAPNt  181 (344)
T 3r24_A          174 ISDMYDPR  181 (344)
T ss_dssp             EECCCCTT
T ss_pred             EecCCCCc
Confidence            99765433

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=94.12  E-value=0.043  Score=51.33  Aligned_cols=77  Identities=12%  Similarity=0.184  Sum_probs=57.5

Q ss_pred             CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------------
Q 025428          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------------  227 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------------  227 (253)
                      .-++||+.||.|.+..-|...|+..|.++|+++.+++.-+.|....  ++..++++|+.++..                 
T Consensus        88 ~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~--p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~  165 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCD--PATHHFNEDIRDITLSHQEGVSDEAAAEHIRQ  165 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCC--TTTCEEESCTHHHHCTTCTTSCHHHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccC--CCcceeccchhhhhhccccccchhhHHhhhhh
Confidence            3589999999999999999889877899999999888887764211  234567788876531                 


Q ss_pred             -CCCccEEEEcccccee
Q 025428          228 -ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       228 -~~~fD~Vi~~~~l~~i  243 (253)
                       ...+|+++.......+
T Consensus       166 ~~~~~Dvl~gGpPCQ~F  182 (482)
T 3me5_A          166 HIPEHDVLLAGFPCQPF  182 (482)
T ss_dssp             HSCCCSEEEEECCCCCC
T ss_pred             cCCCCCEEEecCCCcch
Confidence             1358988876554443

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=94.00  E-value=0.15  Score=46.22  Aligned_cols=77  Identities=16%  Similarity=0.253  Sum_probs=51.9

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc--------CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEE
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ--------GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD  236 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~--------g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~  236 (253)
                      .-.|+|+|.|+|.++.-+.+.        ...+++.||+|+...+.-++++...  .+|.+. .++.+++  ...=+|++
T Consensus        81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~--~~v~W~-~~l~~lp--~~~~~viA  155 (387)
T 1zkd_A           81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGI--RNIHWH-DSFEDVP--EGPAVILA  155 (387)
T ss_dssp             SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTC--SSEEEE-SSGGGSC--CSSEEEEE
T ss_pred             CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcCC--CCeEEe-CChhhcC--CCCeEEEe
Confidence            347999999999997766542        1227999999998877666555432  246654 2333443  22458888


Q ss_pred             ccccceeccC
Q 025428          237 KGTLDAIGLH  246 (253)
Q Consensus       237 ~~~l~~i~~~  246 (253)
                      |.+|+.+.++
T Consensus       156 NE~fDAlPv~  165 (387)
T 1zkd_A          156 NEYFDVLPIH  165 (387)
T ss_dssp             ESSGGGSCCE
T ss_pred             ccccccCceE
Confidence            9998887653

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=92.91  E-value=0.17  Score=46.66  Aligned_cols=76  Identities=22%  Similarity=0.408  Sum_probs=53.0

Q ss_pred             CCEEEEEcCCCcHHHHHHHhc----C--CCcEEEEeCCHHHHHHHHHHHHhcC--C-CceEEEEeccCCCcCCCCcc-EE
Q 025428          165 SWSVLDIGTGNGLLLQELSKQ----G--FSDLTGVDYSEDAINLAQSLANRDG--F-SCIKFLVDDVLDTKLERQFQ-LV  234 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~----g--~~~v~gvD~s~~~l~~ar~~~~~~g--~-~~i~~~~~D~~~~~~~~~fD-~V  234 (253)
                      ..+|+|+|.|+|.++.-+.+.    +  ..+++.||+|+.+.+.-++++....  + .++.+..    +  ++..|. +|
T Consensus       138 ~~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~~~~~~~~~v~W~~----~--lP~~~~g~i  211 (432)
T 4f3n_A          138 TRRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRETLGAQAPGLAARVRWLD----A--LPERFEGVV  211 (432)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHHHHHHSTTTGGGEEEES----S--CCSCEEEEE
T ss_pred             CCeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHHHhccccccCCCceecc----c--CCccCceEE
Confidence            469999999999987666542    2  2379999999988887777775421  1 2567643    1  233454 78


Q ss_pred             EEccccceeccC
Q 025428          235 MDKGTLDAIGLH  246 (253)
Q Consensus       235 i~~~~l~~i~~~  246 (253)
                      ++|.+|+.+.++
T Consensus       212 iANE~fDAlPv~  223 (432)
T 4f3n_A          212 VGNEVLDAMPVR  223 (432)
T ss_dssp             EEESCGGGSCCE
T ss_pred             EeehhhccCcee
Confidence            889999887653

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=92.28  E-value=0.52  Score=35.41  Aligned_cols=62  Identities=19%  Similarity=0.243  Sum_probs=43.4

Q ss_pred             CCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----C-CCccEEE
Q 025428          165 SWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----E-RQFQLVM  235 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~-~~fD~Vi  235 (253)
                      ..+|+=+|||  .++..++    +.|. +|+++|.+++.++.+++.       .+.++.+|..+...    . ..+|+|+
T Consensus         6 ~~~v~I~G~G--~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~~d~vi   75 (141)
T 3llv_A            6 RYEYIVIGSE--AAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE-------GFDAVIADPTDESFYRSLDLEGVSAVL   75 (141)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-------TCEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred             CCEEEEECCC--HHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC-------CCcEEECCCCCHHHHHhCCcccCCEEE
Confidence            4578899985  4544444    4466 899999999888776642       35788899877531    2 4688887


Q ss_pred             E
Q 025428          236 D  236 (253)
Q Consensus       236 ~  236 (253)
                      .
T Consensus        76 ~   76 (141)
T 3llv_A           76 I   76 (141)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=91.95  E-value=0.43  Score=42.27  Aligned_cols=79  Identities=18%  Similarity=0.256  Sum_probs=60.4

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcC---------------------CCceEEEEec
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG---------------------FSCIKFLVDD  221 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g---------------------~~~i~~~~~D  221 (253)
                      +...|+.+|||.......+... +...++-||. |++++.-++.+...+                     -.+..++.+|
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~D  175 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD  175 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEecC
Confidence            4579999999999999999875 2236777777 888888888776542                     1468999999


Q ss_pred             cCCCcC---------C-CCccEEEEcccccee
Q 025428          222 VLDTKL---------E-RQFQLVMDKGTLDAI  243 (253)
Q Consensus       222 ~~~~~~---------~-~~fD~Vi~~~~l~~i  243 (253)
                      +.+...         + +...++++-++|.++
T Consensus       176 L~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL  207 (334)
T 1rjd_A          176 LNDITETTRLLDVCTKREIPTIVISECLLCYM  207 (334)
T ss_dssp             TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS
T ss_pred             CCCcHHHHHHHHhcCCCCCCEEEEEcchhhCC
Confidence            988421         2 457889998998887

>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}

Probab=91.65  E-value=0.75  Score=39.06  Aligned_cols=75  Identities=19%  Similarity=0.222  Sum_probs=59.1

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--  228 (253)
                      .+++.+|=-|++.|.   ++..|++.|+ +|+.+|.+++.++...+.++..|. ++.++++|+.+...         .  
T Consensus         5 L~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~   82 (254)
T 4fn4_A            5 LKNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGK-EVLGVKADVSKKKDVEEFVRRTFETY   82 (254)
T ss_dssp             GTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            367888888987776   4666777787 899999999999988888877764 78899999987531         1  


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      +..|+++.+.-
T Consensus        83 G~iDiLVNNAG   93 (254)
T 4fn4_A           83 SRIDVLCNNAG   93 (254)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            57899888764

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=90.91  E-value=0.29  Score=43.96  Aligned_cols=45  Identities=16%  Similarity=0.101  Sum_probs=37.7

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~  205 (253)
                      +..++.+||-+|+|. |.++..+++. |+.+|+++|.+++.++.+++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            446788999999986 8888888886 76689999999998888764

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=90.72  E-value=0.47  Score=48.14  Aligned_cols=74  Identities=12%  Similarity=0.135  Sum_probs=54.1

Q ss_pred             CCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC-----------------Cc
Q 025428          165 SWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-----------------TK  226 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~-----------------~~  226 (253)
                      ..++||+.||.|.++.-|...|+ ..+.++|+++.+++.-+.|.     .+..++.+|+.+                 ++
T Consensus       540 ~l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~~di~~~~~~~lp  614 (1002)
T 3swr_A          540 KLRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNN-----PGSTVFTEDCNILLKLVMAGETTNSRGQRLP  614 (1002)
T ss_dssp             CEEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHHHTCSBCTTCCBCC
T ss_pred             CCeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CCCccccccHHHHhhhccchhhhhhhhhhcc
Confidence            34899999999999999988887 57889999999988777763     245566666432                 11


Q ss_pred             CCCCccEEEEcccccee
Q 025428          227 LERQFQLVMDKGTLDAI  243 (253)
Q Consensus       227 ~~~~fD~Vi~~~~l~~i  243 (253)
                      ..+.+|+|+.......+
T Consensus       615 ~~~~vDll~GGpPCQ~F  631 (1002)
T 3swr_A          615 QKGDVEMLCGGPPCQGF  631 (1002)
T ss_dssp             CTTTCSEEEECCCCTTC
T ss_pred             cCCCeeEEEEcCCCcch
Confidence            22568998876654444

>3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis}

Probab=90.67  E-value=1.1  Score=37.27  Aligned_cols=77  Identities=22%  Similarity=0.315  Sum_probs=56.8

Q ss_pred             CCCCEEEEEcC-CCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C-
Q 025428          163 LSSWSVLDIGT-GNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E-  228 (253)
Q Consensus       163 ~~~~~VLDiGc-GtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~-  228 (253)
                      ..++++|=.|+ |.|.   ++..|+++|+ +|+.++.++..++...+.+...+-.++.++.+|+.+...         . 
T Consensus        20 l~~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~   98 (266)
T 3o38_A           20 LKGKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEK   98 (266)
T ss_dssp             TTTCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHH
Confidence            35678888887 5554   4566777787 899999999988888777765554579999999987531         0 


Q ss_pred             -CCccEEEEcccc
Q 025428          229 -RQFQLVMDKGTL  240 (253)
Q Consensus       229 -~~fD~Vi~~~~l  240 (253)
                       +..|+++.+.-+
T Consensus        99 ~g~id~li~~Ag~  111 (266)
T 3o38_A           99 AGRLDVLVNNAGL  111 (266)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCcEEEECCCc
Confidence             467998876643

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=90.57  E-value=0.42  Score=42.35  Aligned_cols=46  Identities=33%  Similarity=0.367  Sum_probs=38.2

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      +..++.+||-+|+|. |.++..+++. |+.+|+++|.+++.++.+++.
T Consensus       187 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~l  234 (371)
T 1f8f_A          187 KVTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL  234 (371)
T ss_dssp             CCCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHc
Confidence            346788999999986 8888888876 776799999999999888764

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=90.53  E-value=0.46  Score=46.70  Aligned_cols=44  Identities=18%  Similarity=0.151  Sum_probs=36.7

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC------CCcEEEEeCCHHHHHHHHHHH
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG------FSDLTGVDYSEDAINLAQSLA  207 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g------~~~v~gvD~s~~~l~~ar~~~  207 (253)
                      +..+|||+.||.|.++.-|...|      +.-+.++|+++.+++.-+.|.
T Consensus       211 k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nh  260 (784)
T 4ft4_B          211 RTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNH  260 (784)
T ss_dssp             EEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHC
T ss_pred             CCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHC
Confidence            34589999999999998887765      557889999999998888774

>3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=89.61  E-value=2  Score=35.82  Aligned_cols=74  Identities=19%  Similarity=0.209  Sum_probs=56.1

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~  228 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+...           -
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   86 (264)
T 3ucx_A            9 LTDKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGR-RALSVGTDITDDAQVAHLVDETMKAY   86 (264)
T ss_dssp             TTTCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            467789988887664   4566667787 899999999988888777766553 78999999987531           1


Q ss_pred             CCccEEEEcc
Q 025428          229 RQFQLVMDKG  238 (253)
Q Consensus       229 ~~fD~Vi~~~  238 (253)
                      +..|+++.+.
T Consensus        87 g~id~lv~nA   96 (264)
T 3ucx_A           87 GRVDVVINNA   96 (264)
T ss_dssp             SCCSEEEECC
T ss_pred             CCCcEEEECC
Confidence            4789988765

>3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0

Probab=89.39  E-value=1.3  Score=37.39  Aligned_cols=76  Identities=13%  Similarity=0.144  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC-cC-----------C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT-KL-----------E  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~-~~-----------~  228 (253)
                      .+++||=.|++.|.   ++..|+++|+ +|+.++.++..++.+.+.+...+-.++.++.+|+.+. ..           .
T Consensus        11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~   89 (311)
T 3o26_A           11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF   89 (311)
T ss_dssp             -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence            56678877766543   3445556677 9999999998888777777665545799999999886 20           1


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-+
T Consensus        90 g~iD~lv~nAg~  101 (311)
T 3o26_A           90 GKLDILVNNAGV  101 (311)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCcc
Confidence            478999987654

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=89.19  E-value=0.58  Score=41.84  Aligned_cols=45  Identities=18%  Similarity=0.150  Sum_probs=37.4

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~  205 (253)
                      +..++.+||-+|+|. |.++..+++. |+.+|+++|.+++.++.+++
T Consensus       182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            446788999999875 8888888886 76689999999999988875

>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}

Probab=88.99  E-value=1.9  Score=36.98  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=56.3

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C------
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~------  228 (253)
                      ..+++||=.|++.|.   ++..|+++|+ +|+.++.+++.++.+.+.+...+. ++.++.+|+.+...     .      
T Consensus        29 l~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~  106 (301)
T 3tjr_A           29 FDGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGF-DAHGVVCDVRHLDEMVRLADEAFRLL  106 (301)
T ss_dssp             STTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHhC
Confidence            366789988877653   3455666677 899999999998888877766653 78999999987531     1      


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-+
T Consensus       107 g~id~lvnnAg~  118 (301)
T 3tjr_A          107 GGVDVVFSNAGI  118 (301)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            478998877543

>3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp}

Probab=88.86  E-value=1.9  Score=35.49  Aligned_cols=75  Identities=16%  Similarity=0.271  Sum_probs=54.7

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C------C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~------~  229 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.+|.+++.++...+.+...+ .++.++.+|+.+...     .      +
T Consensus         8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~g   85 (253)
T 3qiv_A            8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADG-GTAISVAVDVSDPESAKAMADRTLAEFG   85 (253)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CEEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            56788888876553   3555556677 89999999998888877776555 368899999987531     0      3


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus        86 ~id~li~~Ag~   96 (253)
T 3qiv_A           86 GIDYLVNNAAI   96 (253)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            78998876643

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=88.72  E-value=0.72  Score=34.89  Aligned_cols=64  Identities=13%  Similarity=0.206  Sum_probs=43.7

Q ss_pred             CCEEEEEcCCC-cHH-HHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----C-CCccEEEE
Q 025428          165 SWSVLDIGTGN-GLL-LQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----E-RQFQLVMD  236 (253)
Q Consensus       165 ~~~VLDiGcGt-G~~-~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~-~~fD~Vi~  236 (253)
                      ..+|+=+|||. |.. +..|.+.|. .|+++|.+++.++.+++    .   .+.++.+|..+...    . ..+|+|+.
T Consensus         7 ~~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~----~---g~~~i~gd~~~~~~l~~a~i~~ad~vi~   77 (140)
T 3fwz_A            7 CNHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRE----R---GVRAVLGNAANEEIMQLAHLECAKWLIL   77 (140)
T ss_dssp             CSCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHH----T---TCEEEESCTTSHHHHHHTTGGGCSEEEE
T ss_pred             CCCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHH----c---CCCEEECCCCCHHHHHhcCcccCCEEEE
Confidence            35788899863 332 333334466 89999999998887764    2   45788999876531    2 46888875

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=88.71  E-value=0.68  Score=40.79  Aligned_cols=45  Identities=22%  Similarity=0.288  Sum_probs=37.0

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~  205 (253)
                      ...++.+||-+|+|. |.++..+++. |+.+|+++|.+++.++.+++
T Consensus       168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            346788999999875 8888888876 66689999999998888765

>4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp}

Probab=88.43  E-value=0.88  Score=38.65  Aligned_cols=76  Identities=18%  Similarity=0.250  Sum_probs=58.2

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------C-
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------E-  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------~-  228 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+...|. ++.++++|+.+...          . 
T Consensus         7 L~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   84 (255)
T 4g81_D            7 LTGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGY-DAHGVAFDVTDELAIEAAFSKLDAEG   84 (255)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHTT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            467888888877665   4566777787 999999999999888887777764 78889999987531          1 


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      ++.|+++.+.-+
T Consensus        85 G~iDiLVNNAG~   96 (255)
T 4g81_D           85 IHVDILINNAGI   96 (255)
T ss_dssp             CCCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            578998887643

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=88.41  E-value=1.3  Score=36.90  Aligned_cols=75  Identities=12%  Similarity=0.110  Sum_probs=55.3

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C-----CC
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E-----RQ  230 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~-----~~  230 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+...     .     +.
T Consensus         6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~g~   83 (252)
T 3h7a_A            6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGG-RIVARSLDARNEDEVTAFLNAADAHAP   83 (252)
T ss_dssp             CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHSC
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEECcCCCHHHHHHHHHHHHhhCC
Confidence            56788888877663   4556666687 899999999888888777766553 78999999987531     1     46


Q ss_pred             ccEEEEcccc
Q 025428          231 FQLVMDKGTL  240 (253)
Q Consensus       231 fD~Vi~~~~l  240 (253)
                      .|+++.+.-+
T Consensus        84 id~lv~nAg~   93 (252)
T 3h7a_A           84 LEVTIFNVGA   93 (252)
T ss_dssp             EEEEEECCCC
T ss_pred             ceEEEECCCc
Confidence            7888876543

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=88.35  E-value=0.72  Score=40.43  Aligned_cols=66  Identities=17%  Similarity=0.177  Sum_probs=46.7

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEE
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD  236 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~  236 (253)
                      +..++.+||-+|+|. |.++..+++. |+ +|+++|.+++.++.+++    .|.+.+  + .+...  +...+|+|+.
T Consensus       173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~----lGa~~v--~-~~~~~--~~~~~D~vid  240 (348)
T 3two_A          173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALS----MGVKHF--Y-TDPKQ--CKEELDFIIS  240 (348)
T ss_dssp             TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHH----TTCSEE--E-SSGGG--CCSCEEEEEE
T ss_pred             CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHh----cCCCee--c-CCHHH--HhcCCCEEEE
Confidence            446788999999875 7788888876 66 89999999998888765    354332  1 33222  2237888886

>3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2

Probab=88.21  E-value=2  Score=35.21  Aligned_cols=75  Identities=16%  Similarity=0.288  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~  229 (253)
                      .++++|=.|++.|.   ++..|+++|+ +|+.++.++..++...+.++..+. ++.++.+|+.+...           .+
T Consensus         4 ~~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~   81 (247)
T 3lyl_A            4 NEKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGF-KARGLVLNISDIESIQNFFAEIKAENL   81 (247)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEecCCCHHHHHHHHHHHHHHcC
Confidence            45678877765443   3455556677 899999999988888777766653 78999999987531           14


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus        82 ~id~li~~Ag~   92 (247)
T 3lyl_A           82 AIDILVNNAGI   92 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            67988876543

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=88.15  E-value=1.4  Score=36.90  Aligned_cols=76  Identities=13%  Similarity=0.051  Sum_probs=57.2

Q ss_pred             CCCCEEEEEcCC----CcH-HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------
Q 025428          163 LSSWSVLDIGTG----NGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (253)
Q Consensus       163 ~~~~~VLDiGcG----tG~-~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------  227 (253)
                      .+++++|=-|++    -|. ++..|++.|+ +|+.++.+++.++.+.+.++..+-.++.++++|+.+...          
T Consensus         4 l~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   82 (256)
T 4fs3_A            4 LENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGK   82 (256)
T ss_dssp             CTTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHH
Confidence            468899999853    333 5677778888 899999999888888887776654578899999987521          


Q ss_pred             C-CCccEEEEccc
Q 025428          228 E-RQFQLVMDKGT  239 (253)
Q Consensus       228 ~-~~fD~Vi~~~~  239 (253)
                      . +..|+++.+.-
T Consensus        83 ~~G~iD~lvnnAg   95 (256)
T 4fs3_A           83 DVGNIDGVYHSIA   95 (256)
T ss_dssp             HHCCCSEEEECCC
T ss_pred             HhCCCCEEEeccc
Confidence            1 57898887654

>3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0

Probab=87.89  E-value=1.9  Score=36.00  Aligned_cols=76  Identities=17%  Similarity=0.192  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--~  229 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++.+.+.+...+-.++.++.+|+.+...         .  +
T Consensus         9 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   87 (262)
T 3pk0_A            9 QGRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFG   87 (262)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence            56778877765443   3445556677 899999999988887777766553478999999987531         0  4


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus        88 ~id~lvnnAg~   98 (262)
T 3pk0_A           88 GIDVVCANAGV   98 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78988876543

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=87.67  E-value=0.97  Score=39.38  Aligned_cols=44  Identities=23%  Similarity=0.367  Sum_probs=37.1

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~  205 (253)
                      +..++.+||-+|+|. |.++..+++. |+ +|+++|.+++.++.+++
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  208 (340)
T 3s2e_A          163 DTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARR  208 (340)
T ss_dssp             TCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHH
Confidence            336788999999875 8888888887 76 99999999999888765

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=87.20  E-value=0.97  Score=39.65  Aligned_cols=46  Identities=20%  Similarity=0.217  Sum_probs=37.9

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      ...++.+||-+|+|. |.++..+++. |+.+|+++|.+++.++.+++.
T Consensus       163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~l  210 (352)
T 3fpc_A          163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEY  210 (352)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHh
Confidence            346788999999875 7888888887 666899999999988888764

>3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5}

Probab=87.09  E-value=2.3  Score=35.37  Aligned_cols=75  Identities=9%  Similarity=0.117  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~  229 (253)
                      .+++||=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+...           -+
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~g  105 (262)
T 3rkr_A           28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGG-EAESHACDLSHSDAIAAFATGVLAAHG  105 (262)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCC-ceeEEEecCCCHHHHHHHHHHHHHhcC
Confidence            56788877765442   2344555677 899999999988888777766553 78999999987531           14


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus       106 ~id~lv~~Ag~  116 (262)
T 3rkr_A          106 RCDVLVNNAGV  116 (262)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCc
Confidence            68988876544

>3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber}

Probab=86.92  E-value=2.6  Score=35.59  Aligned_cols=75  Identities=15%  Similarity=0.200  Sum_probs=53.5

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--~  229 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+...         .  +
T Consensus        23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g  100 (279)
T 3sju_A           23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGH-DVDGSSCDVTSTDEVHAAVAAAVERFG  100 (279)
T ss_dssp             --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            46788888876553   3455666677 899999999988887777765553 78999999987531         1  4


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus       101 ~id~lv~nAg~  111 (279)
T 3sju_A          101 PIGILVNSAGR  111 (279)
T ss_dssp             SCCEEEECCCC
T ss_pred             CCcEEEECCCC
Confidence            78988876543

>3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis}

Probab=86.83  E-value=2.6  Score=35.03  Aligned_cols=76  Identities=13%  Similarity=0.194  Sum_probs=54.6

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C------
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~------  228 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.+|.+++.++...+.+...+ .++.++.+|+.+...     .      
T Consensus        10 l~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~   87 (256)
T 3gaf_A           10 LNDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAG-GKAIGLECNVTDEQHREAVIKAALDQF   87 (256)
T ss_dssp             CTTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence            356788877766553   3455556687 89999999988888777776655 378999999987531     1      


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-+
T Consensus        88 g~id~lv~nAg~   99 (256)
T 3gaf_A           88 GKITVLVNNAGG   99 (256)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            478998876643

>3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A*

Probab=86.79  E-value=3.4  Score=34.41  Aligned_cols=77  Identities=17%  Similarity=0.100  Sum_probs=55.3

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh-cCCCceEEEEeccCCCcC-----------
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVDDVLDTKL-----------  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~-~g~~~i~~~~~D~~~~~~-----------  227 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++.+.+.+.. .+-.++.++.+|+.+...           
T Consensus         6 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (265)
T 3lf2_A            6 LSEAVAVVTGGSSGIGLATVELLLEAGA-AVAFCARDGERLRAAESALRQRFPGARLFASVCDVLDALQVRAFAEACERT   84 (265)
T ss_dssp             CTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHSTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCCceEEEEeCCCCCHHHHHHHHHHHHHH
Confidence            356788888877653   3555666677 899999999988877776654 333358999999987531           


Q ss_pred             CCCccEEEEcccc
Q 025428          228 ERQFQLVMDKGTL  240 (253)
Q Consensus       228 ~~~fD~Vi~~~~l  240 (253)
                      -+..|+++.+.-+
T Consensus        85 ~g~id~lvnnAg~   97 (265)
T 3lf2_A           85 LGCASILVNNAGQ   97 (265)
T ss_dssp             HCSCSEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence            1468998877654

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=86.75  E-value=1.2  Score=38.78  Aligned_cols=46  Identities=20%  Similarity=0.310  Sum_probs=37.8

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      ...++.+||-+|+|. |.++..+++. |..+|+++|.+++.++.+++.
T Consensus       168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~l  215 (345)
T 3jv7_A          168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREV  215 (345)
T ss_dssp             GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence            456788999999875 8888888876 566999999999999888763

>1xu9_A Corticosteroid 11-beta-dehydrogenase, isozyme 1; hydroxysteroid, SDR, oxidoreductase; HET: NDP CPS MES; 1.55A {Homo sapiens} SCOP: c.2.1.2 PDB: 1xu7_A* 3bzu_A* 3czr_A* 3d3e_A* 3d4n_A* 3fco_A* 3frj_A* 3h6k_A* 3hfg_A* 3oq1_A* 3qqp_A* 3pdj_A* 3d5q_A* 2rbe_A* 3byz_A* 3ey4_A* 3tfq_A* 3ch6_A* 2irw_A* 2ilt_A* ...

Probab=86.28  E-value=2.4  Score=35.72  Aligned_cols=72  Identities=13%  Similarity=0.163  Sum_probs=50.6

Q ss_pred             CCCEEEEEcCCCcHHHH----HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C------
Q 025428          164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~----~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~------  228 (253)
                      .+++||=.|++ |.++.    .|+++|+ +|++++.+++.++...+.+...+..++.++.+|+.+...     .      
T Consensus        27 ~~k~vlITGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~~~~~~~~~  104 (286)
T 1xu9_A           27 QGKKVIVTGAS-KGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM  104 (286)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-cHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHHHc
Confidence            56788877754 44444    4445577 899999999888777666555454468899999987421     1      


Q ss_pred             CCccEEEEc
Q 025428          229 RQFQLVMDK  237 (253)
Q Consensus       229 ~~fD~Vi~~  237 (253)
                      +..|+++.+
T Consensus       105 g~iD~li~n  113 (286)
T 1xu9_A          105 GGLDMLILN  113 (286)
T ss_dssp             TSCSEEEEC
T ss_pred             CCCCEEEEC
Confidence            478999876

>3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti}

Probab=86.26  E-value=2.7  Score=35.39  Aligned_cols=75  Identities=16%  Similarity=0.176  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--~  229 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+...         .  +
T Consensus         3 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~g   80 (264)
T 3tfo_A            3 MDKVILITGASGGIGEGIARELGVAGA-KILLGARRQARIEAIATEIRDAGG-TALAQVLDVTDRHSVAAFAQAAVDTWG   80 (264)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            35678877776553   3455566677 899999999988888777766553 68889999987531         1  4


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus        81 ~iD~lVnnAG~   91 (264)
T 3tfo_A           81 RIDVLVNNAGV   91 (264)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68988876543

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=86.19  E-value=1.2  Score=46.49  Aligned_cols=75  Identities=12%  Similarity=0.143  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCC-----------------C
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLD-----------------T  225 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~-----------------~  225 (253)
                      ...++||+.||.|.++.-|...|+ ..+.++|+++.+++.-+.|.     .+..++.+|+.+                 +
T Consensus       850 ~~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~~~l  924 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLGQRL  924 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSCCBC
T ss_pred             CCceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhhhhc
Confidence            345899999999999999988886 56889999999998877764     234455555431                 1


Q ss_pred             cCCCCccEEEEcccccee
Q 025428          226 KLERQFQLVMDKGTLDAI  243 (253)
Q Consensus       226 ~~~~~fD~Vi~~~~l~~i  243 (253)
                      +..+.+|+|+.......+
T Consensus       925 p~~~~vDvl~GGpPCQ~F  942 (1330)
T 3av4_A          925 PQKGDVEMLCGGPPCQGF  942 (1330)
T ss_dssp             CCTTTCSEEEECCCCTTT
T ss_pred             cccCccceEEecCCCccc
Confidence            112468988876555444

>3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron}

Probab=86.11  E-value=3.2  Score=34.38  Aligned_cols=76  Identities=12%  Similarity=0.181  Sum_probs=54.5

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc--CCCceEEEEeccCCCcC-----------
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVDDVLDTKL-----------  227 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~--g~~~i~~~~~D~~~~~~-----------  227 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...  +..++.++.+|+.+...           
T Consensus         6 ~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (250)
T 3nyw_A            6 QKGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQK   84 (250)
T ss_dssp             CCCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHh
Confidence            56788888876653   4555666687 8999999999888877766554  32468899999987531           


Q ss_pred             CCCccEEEEcccc
Q 025428          228 ERQFQLVMDKGTL  240 (253)
Q Consensus       228 ~~~fD~Vi~~~~l  240 (253)
                      -+..|+++.+.-+
T Consensus        85 ~g~iD~lvnnAg~   97 (250)
T 3nyw_A           85 YGAVDILVNAAAM   97 (250)
T ss_dssp             HCCEEEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence            1478988876643

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=85.73  E-value=1.3  Score=38.06  Aligned_cols=64  Identities=19%  Similarity=0.282  Sum_probs=44.9

Q ss_pred             CCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEE
Q 025428          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD  236 (253)
Q Consensus       162 ~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~  236 (253)
                      ..++.+||-+|+| .|.++..+++. |+ +|++++ +++.++.+++.    |.+.+  + .|..++  .+.+|+|+.
T Consensus       140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~l----Ga~~v--~-~d~~~v--~~g~Dvv~d  205 (315)
T 3goh_A          140 LTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKR----GVRHL--Y-REPSQV--TQKYFAIFD  205 (315)
T ss_dssp             CCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHH----TEEEE--E-SSGGGC--CSCEEEEEC
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHc----CCCEE--E-cCHHHh--CCCccEEEE
Confidence            3678899999996 48888888877 77 999999 99888888764    43221  1 232222  466888774

>3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str}

Probab=85.68  E-value=2.4  Score=35.24  Aligned_cols=74  Identities=15%  Similarity=0.196  Sum_probs=52.9

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--~  229 (253)
                      +++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++.+.+.+...+ .++.++.+|+.+...         .  +
T Consensus         5 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   82 (257)
T 3imf_A            5 KEKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFP-GQILTVQMDVRNTDDIQKMIEQIDEKFG   82 (257)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCST-TCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence            56778877765543   3455566677 89999999998888877765544 368999999987531         0  4


Q ss_pred             CccEEEEccc
Q 025428          230 QFQLVMDKGT  239 (253)
Q Consensus       230 ~fD~Vi~~~~  239 (253)
                      ..|+++.+.-
T Consensus        83 ~id~lv~nAg   92 (257)
T 3imf_A           83 RIDILINNAA   92 (257)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6898887654

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=85.66  E-value=1.2  Score=39.09  Aligned_cols=46  Identities=26%  Similarity=0.282  Sum_probs=38.0

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      +..++.+||-+|+|. |.++..+++. |+..|+++|.+++.++.+++.
T Consensus       176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  223 (363)
T 3m6i_A          176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI  223 (363)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh
Confidence            346788999999875 7788888877 775699999999999999875

>3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans}

Probab=85.53  E-value=4.3  Score=33.27  Aligned_cols=73  Identities=15%  Similarity=0.127  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCCcHHHHH----HHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C------
Q 025428          164 SSWSVLDIGTGNGLLLQE----LSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~----la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~------  228 (253)
                      .+++||=.|++ |.++..    |+++|+ +|++++.++..++...+.+...+ .++.++.+|+.+...     .      
T Consensus        12 ~~k~vlItGas-ggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (260)
T 3awd_A           12 DNRVAIVTGGA-QNIGLACVTALAEAGA-RVIIADLDEAMATKAVEDLRMEG-HDVSSVVMDVTNTESVQNAVRSVHEQE   88 (260)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CceEEEEecCCCHHHHHHHHHHHHHHc
Confidence            56788877754 545444    445577 89999999887776666555444 268999999987531     1      


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      +..|+|+.+..
T Consensus        89 ~~id~vi~~Ag   99 (260)
T 3awd_A           89 GRVDILVACAG   99 (260)
T ss_dssp             SCCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            36898887654

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=85.49  E-value=2.7  Score=34.06  Aligned_cols=68  Identities=15%  Similarity=0.167  Sum_probs=44.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCce-EEEEeccCCCcCC--CCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCI-KFLVDDVLDTKLE--RQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i-~~~~~D~~~~~~~--~~fD~Vi  235 (253)
                      ..+++||=.| |+|.++..++    +.|+ +|++++.++..++....       .++ +++.+|+.+....  +..|+|+
T Consensus        19 l~~~~ilVtG-atG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~-------~~~~~~~~~Dl~~~~~~~~~~~D~vi   89 (236)
T 3e8x_A           19 FQGMRVLVVG-ANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRE-------RGASDIVVANLEEDFSHAFASIDAVV   89 (236)
T ss_dssp             --CCEEEEET-TTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH-------TTCSEEEECCTTSCCGGGGTTCSEEE
T ss_pred             cCCCeEEEEC-CCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHh-------CCCceEEEcccHHHHHHHHcCCCEEE
Confidence            3567888777 4566555554    4476 99999999876554332       257 8999999722111  5689988


Q ss_pred             Eccc
Q 025428          236 DKGT  239 (253)
Q Consensus       236 ~~~~  239 (253)
                      .+..
T Consensus        90 ~~ag   93 (236)
T 3e8x_A           90 FAAG   93 (236)
T ss_dssp             ECCC
T ss_pred             ECCC
Confidence            7543

>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}

Probab=85.33  E-value=3.9  Score=34.16  Aligned_cols=77  Identities=19%  Similarity=0.259  Sum_probs=54.0

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCC------------HHHHHHHHHHHHhcCCCceEEEEeccCCCcC
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s------------~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~  227 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.+|.+            ++.++...+.+...+. ++.++.+|+.+...
T Consensus        11 l~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~   88 (278)
T 3sx2_A           11 LTGKVAFITGAARGQGRAHAVRLAADGA-DIIAVDLCDQIASVPYPLATPEELAATVKLVEDIGS-RIVARQADVRDRES   88 (278)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHHTC-CEEEEECCTTCHHH
T ss_pred             CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEecccccccccccccchHHHHHHHHHHHhcCC-eEEEEeCCCCCHHH
Confidence            366788888876553   4556666777 89999987            6777666666555553 78999999987531


Q ss_pred             -----C------CCccEEEEccccc
Q 025428          228 -----E------RQFQLVMDKGTLD  241 (253)
Q Consensus       228 -----~------~~fD~Vi~~~~l~  241 (253)
                           .      +..|+++.+.-+.
T Consensus        89 v~~~~~~~~~~~g~id~lv~nAg~~  113 (278)
T 3sx2_A           89 LSAALQAGLDELGRLDIVVANAGIA  113 (278)
T ss_dssp             HHHHHHHHHHHHCCCCEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCCC
Confidence                 1      4789988776543

>2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A*

Probab=85.29  E-value=4.5  Score=33.27  Aligned_cols=75  Identities=13%  Similarity=0.176  Sum_probs=52.1

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C------C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~------~  229 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+...     .      +
T Consensus         6 ~~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~~~~~~~~~~~~~g   83 (247)
T 2jah_A            6 QGKVALITGASSGIGEATARALAAEGA-AVAIAARRVEKLRALGDELTAAGA-KVHVLELDVADRQGVDAAVASTVEALG   83 (247)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            45788888865442   3445555677 899999999888776666655443 68899999987531     0      4


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus        84 ~id~lv~nAg~   94 (247)
T 2jah_A           84 GLDILVNNAGI   94 (247)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68998876543

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=85.24  E-value=3.1  Score=34.61  Aligned_cols=62  Identities=16%  Similarity=0.202  Sum_probs=45.6

Q ss_pred             CEEEEEcCCCcHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcc
Q 025428          166 WSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~----g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      .+||=.|+  |.++..+++.    |+ +|++++.++........       .+++++.+|+.++. -..+|+|+...
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-------~~~~~~~~D~~d~~-~~~~d~vi~~a   71 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA-------SGAEPLLWPGEEPS-LDGVTHLLIST   71 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH-------TTEEEEESSSSCCC-CTTCCEEEECC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh-------CCCeEEEecccccc-cCCCCEEEECC
Confidence            58999994  8887776654    66 89999999865543332       26899999998865 45678887644

>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}

Probab=85.22  E-value=3.6  Score=34.86  Aligned_cols=75  Identities=17%  Similarity=0.198  Sum_probs=54.1

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~  229 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+ .++.++.+|+.+...           -+
T Consensus        27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (283)
T 3v8b_A           27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAG-GQAIALEADVSDELQMRNAVRDLVLKFG  104 (283)
T ss_dssp             CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTT-CCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCHHHHHHHHHHHHHHhC
Confidence            56788888876553   3455566677 99999999988887777665544 268899999987531           14


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus       105 ~iD~lVnnAg~  115 (283)
T 3v8b_A          105 HLDIVVANAGI  115 (283)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            78998876654

>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0

Probab=85.11  E-value=3.4  Score=33.77  Aligned_cols=77  Identities=10%  Similarity=0.195  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecc--CCCc-----C-----
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDTK-----L-----  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~--~~~~-----~-----  227 (253)
                      .+++++|=.|++.|.   ++..|+++|+ +|+.++.++..++...+.+...+..++.++..|+  .+..     .     
T Consensus        12 l~~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~~~~   90 (247)
T 3i1j_A           12 LKGRVILVTGAARGIGAAAARAYAAHGA-SVVLLGRTEASLAEVSDQIKSAGQPQPLIIALNLENATAQQYRELAARVEH   90 (247)
T ss_dssp             TTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCCCceEEEeccccCCHHHHHHHHHHHHH
Confidence            356788877765443   3455556677 8999999999998888877766655678888887  3321     0     


Q ss_pred             C-CCccEEEEcccc
Q 025428          228 E-RQFQLVMDKGTL  240 (253)
Q Consensus       228 ~-~~fD~Vi~~~~l  240 (253)
                      . +..|+++.+..+
T Consensus        91 ~~g~id~lv~nAg~  104 (247)
T 3i1j_A           91 EFGRLDGLLHNASI  104 (247)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             hCCCCCEEEECCcc
Confidence            0 368988876543

>3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans}

Probab=84.98  E-value=4.1  Score=34.23  Aligned_cols=77  Identities=17%  Similarity=0.185  Sum_probs=54.9

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCcC----------
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL----------  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~~----------  227 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.+|.+++.++...+.+...+..  ++.++.+|+.+...          
T Consensus         9 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~   87 (281)
T 3svt_A            9 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTA   87 (281)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHH
Confidence            356788888876553   3455666677 8999999999888877777655432  68899999987531          


Q ss_pred             -CCCccEEEEcccc
Q 025428          228 -ERQFQLVMDKGTL  240 (253)
Q Consensus       228 -~~~fD~Vi~~~~l  240 (253)
                       -+..|+++.+.-.
T Consensus        88 ~~g~id~lv~nAg~  101 (281)
T 3svt_A           88 WHGRLHGVVHCAGG  101 (281)
T ss_dssp             HHSCCCEEEECCCC
T ss_pred             HcCCCCEEEECCCc
Confidence             1467988876643

>3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus}

Probab=84.95  E-value=1.8  Score=37.09  Aligned_cols=76  Identities=17%  Similarity=0.185  Sum_probs=54.3

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--~  229 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+..++.++.+|+.+...         .  +
T Consensus        40 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  118 (293)
T 3rih_A           40 SARSVLVTGGTKGIGRGIATVFARAGA-NVAVAARSPRELSSVTAELGELGAGNVIGVRLDVSDPGSCADAARTVVDAFG  118 (293)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHTTSSSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHHHHHcC
Confidence            56778877765543   3455566677 999999999888877777665554478999999987531         1  4


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus       119 ~iD~lvnnAg~  129 (293)
T 3rih_A          119 ALDVVCANAGI  129 (293)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            67988876543

>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}

Probab=84.95  E-value=4.3  Score=35.04  Aligned_cols=76  Identities=18%  Similarity=0.246  Sum_probs=55.5

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC-----------C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-----------E  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~-----------~  228 (253)
                      .+++||=.|++.|.   ++..|+++|+ +|++++.+++.++.+.+.+...+.. ++.++.+|+.+...           -
T Consensus         7 ~~k~vlVTGas~gIG~~la~~l~~~G~-~Vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~   85 (319)
T 3ioy_A            7 AGRTAFVTGGANGVGIGLVRQLLNQGC-KVAIADIRQDSIDKALATLEAEGSGPEVMGVQLDVASREGFKMAADEVEARF   85 (319)
T ss_dssp             TTCEEEEETTTSTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCGGGEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEcCCchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCeEEEEECCCCCHHHHHHHHHHHHHhC
Confidence            56789988877654   3455666687 8999999999888887776655432 68999999987531           1


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-+
T Consensus        86 g~id~lv~nAg~   97 (319)
T 3ioy_A           86 GPVSILCNNAGV   97 (319)
T ss_dssp             CCEEEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            467988877654

>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0

Probab=84.92  E-value=4.5  Score=33.80  Aligned_cols=75  Identities=19%  Similarity=0.188  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCC------------HHHHHHHHHHHHhcCCCceEEEEeccCCCcC-
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-  227 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s------------~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-  227 (253)
                      .++++|=.|++.|.   ++..|+++|+ +|+.+|.+            ...++.+...+...+ .++.++.+|+.+... 
T Consensus         9 ~gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v   86 (287)
T 3pxx_A            9 QDKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTG-RKAYTAEVDVRDRAAV   86 (287)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTT-SCEEEEECCTTCHHHH
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcC-CceEEEEccCCCHHHH
Confidence            56788888876553   3455666677 89999987            777777766665555 378999999987531 


Q ss_pred             ----C------CCccEEEEcccc
Q 025428          228 ----E------RQFQLVMDKGTL  240 (253)
Q Consensus       228 ----~------~~fD~Vi~~~~l  240 (253)
                          .      +..|+++.+.-+
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~  109 (287)
T 3pxx_A           87 SRELANAVAEFGKLDVVVANAGI  109 (287)
T ss_dssp             HHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHcCCCCEEEECCCc
Confidence                1      478998887654

>1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2

Probab=84.91  E-value=4.6  Score=33.70  Aligned_cols=73  Identities=14%  Similarity=0.075  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCCcHHHHHH----HhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428          164 SSWSVLDIGTGNGLLLQEL----SKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~l----a~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~  228 (253)
                      .+++||=.|++ |.++..+    ++.|+ +|++++.++..++...+.++..+. ++.++.+|+.+...           -
T Consensus        30 ~~k~vlITGas-ggIG~~la~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~~  106 (272)
T 1yb1_A           30 TGEIVLITGAG-HGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEI  106 (272)
T ss_dssp             TTCEEEEETTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEEcCHHHHHHHHHHHHhcCC-eEEEEEeeCCCHHHHHHHHHHHHHHC
Confidence            56788877755 4555444    45576 899999999888776666655443 78999999987531           1


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      +.+|+|+.+..
T Consensus       107 g~iD~li~~Ag  117 (272)
T 1yb1_A          107 GDVSILVNNAG  117 (272)
T ss_dssp             CCCSEEEECCC
T ss_pred             CCCcEEEECCC
Confidence            36899887654

>3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium}

Probab=84.89  E-value=4.5  Score=34.43  Aligned_cols=76  Identities=18%  Similarity=0.223  Sum_probs=54.3

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCC------------HHHHHHHHHHHHhcCCCceEEEEeccCCCcC
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s------------~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~  227 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.+|.+            ++.++...+.+...+. ++.++.+|+.+...
T Consensus        26 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~  103 (299)
T 3t7c_A           26 VEGKVAFITGAARGQGRSHAITLAREGA-DIIAIDVCKQLDGVKLPMSTPDDLAETVRQVEALGR-RIIASQVDVRDFDA  103 (299)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHH
T ss_pred             cCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEecccccccccccccCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHH
Confidence            367788888877664   4556666777 89999987            6677766666655553 78999999987531


Q ss_pred             ----------C-CCccEEEEcccc
Q 025428          228 ----------E-RQFQLVMDKGTL  240 (253)
Q Consensus       228 ----------~-~~fD~Vi~~~~l  240 (253)
                                . +..|+++.+.-+
T Consensus       104 v~~~~~~~~~~~g~iD~lv~nAg~  127 (299)
T 3t7c_A          104 MQAAVDDGVTQLGRLDIVLANAAL  127 (299)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHhCCCCEEEECCCC
Confidence                      1 478998876644

>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A

Probab=84.84  E-value=3.3  Score=34.26  Aligned_cols=77  Identities=14%  Similarity=0.208  Sum_probs=53.4

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecc--CCCc-----C-----
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV--LDTK-----L-----  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~--~~~~-----~-----  227 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+-.++.++..|+  .+..     +     
T Consensus        10 l~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~   88 (252)
T 3f1l_A           10 LNDRIILVTGASDGIGREAAMTYARYGA-TVILLGRNEEKLRQVASHINEETGRQPQWFILDLLTCTSENCQQLAQRIAV   88 (252)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSCCCEEEECCTTTCCHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCCCceEEEEecccCCHHHHHHHHHHHHH
Confidence            366788888876553   3455666677 8999999998888777666554433688999998  4431     0     


Q ss_pred             -CCCccEEEEcccc
Q 025428          228 -ERQFQLVMDKGTL  240 (253)
Q Consensus       228 -~~~fD~Vi~~~~l  240 (253)
                       -+..|+++.+.-+
T Consensus        89 ~~g~id~lv~nAg~  102 (252)
T 3f1l_A           89 NYPRLDGVLHNAGL  102 (252)
T ss_dssp             HCSCCSEEEECCCC
T ss_pred             hCCCCCEEEECCcc
Confidence             1478998876643

>3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0

Probab=84.76  E-value=4.5  Score=33.94  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=54.4

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeC-------------CHHHHHHHHHHHHhcCCCceEEEEeccCCCc
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-------------SEDAINLAQSLANRDGFSCIKFLVDDVLDTK  226 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~-------------s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~  226 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.+|.             +++.++...+.+...+. ++.++.+|+.+..
T Consensus        13 l~gk~~lVTGas~gIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~   90 (280)
T 3pgx_A           13 LQGRVAFITGAARGQGRSHAVRLAAEGA-DIIACDICAPVSASVTYAPASPEDLDETARLVEDQGR-KALTRVLDVRDDA   90 (280)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHTTTC-CEEEEECCTTCHH
T ss_pred             cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHH
Confidence            367788888877654   4556666777 8999998             67777777776665553 7889999998753


Q ss_pred             C-----------CCCccEEEEcccc
Q 025428          227 L-----------ERQFQLVMDKGTL  240 (253)
Q Consensus       227 ~-----------~~~fD~Vi~~~~l  240 (253)
                      .           -+..|+++.+.-+
T Consensus        91 ~v~~~~~~~~~~~g~id~lvnnAg~  115 (280)
T 3pgx_A           91 ALRELVADGMEQFGRLDVVVANAGV  115 (280)
T ss_dssp             HHHHHHHHHHHHHCCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            1           1478988876543

>3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum}

Probab=84.73  E-value=2.7  Score=35.54  Aligned_cols=76  Identities=14%  Similarity=0.141  Sum_probs=55.2

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C------
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~------  228 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+...     .      
T Consensus        30 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~d~~~v~~~~~~~~~~~  107 (276)
T 3r1i_A           30 LSGKRALITGASTGIGKKVALAYAEAGA-QVAVAARHSDALQVVADEIAGVGG-KALPIRCDVTQPDQVRGMLDQMTGEL  107 (276)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            467788888876553   3455666677 899999999888877777666553 78899999987531     1      


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-+
T Consensus       108 g~iD~lvnnAg~  119 (276)
T 3r1i_A          108 GGIDIAVCNAGI  119 (276)
T ss_dssp             SCCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            378998876643

>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*

Probab=84.55  E-value=4.8  Score=33.79  Aligned_cols=75  Identities=15%  Similarity=0.147  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~  229 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|++++.+++.++...+.+...+. ++.++.+|+.+...           -+
T Consensus        21 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g   98 (277)
T 2rhc_B           21 DSEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYG   98 (277)
T ss_dssp             TSCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHhC
Confidence            56788888865442   3444555677 899999999887766666554443 68899999987531           14


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus        99 ~iD~lv~~Ag~  109 (277)
T 2rhc_B           99 PVDVLVNNAGR  109 (277)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68998876543

>1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2

Probab=84.49  E-value=5  Score=33.55  Aligned_cols=75  Identities=15%  Similarity=0.308  Sum_probs=51.8

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc------------CC
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------------LE  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~------------~~  228 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+..            +.
T Consensus        20 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~   97 (273)
T 1ae1_A           20 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVFD   97 (273)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            56788888865443   3444555677 899999999887776666554443 6889999997753            11


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-+
T Consensus        98 g~id~lv~nAg~  109 (273)
T 1ae1_A           98 GKLNILVNNAGV  109 (273)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCcEEEECCCC
Confidence            578988876643

>3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A*

Probab=84.48  E-value=4.6  Score=33.90  Aligned_cols=76  Identities=17%  Similarity=0.251  Sum_probs=53.9

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCC----------------HHHHHHHHHHHHhcCCCceEEEEeccC
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS----------------EDAINLAQSLANRDGFSCIKFLVDDVL  223 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s----------------~~~l~~ar~~~~~~g~~~i~~~~~D~~  223 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.+|.+                ++.++...+.+...+ .++.++.+|+.
T Consensus         9 l~~k~~lVTGas~gIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~   86 (286)
T 3uve_A            9 VEGKVAFVTGAARGQGRSHAVRLAQEGA-DIIAVDICKPIRAGVVDTAIPASTPEDLAETADLVKGHN-RRIVTAEVDVR   86 (286)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCSBTTBCCCSSCCCCHHHHHHHHHHHHTTT-CCEEEEECCTT
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeccccccccccccccccCCHHHHHHHHHHHhhcC-CceEEEEcCCC
Confidence            367789988887664   4566666777 89999987                666766666555544 37899999998


Q ss_pred             CCcC---------C--CCccEEEEcccc
Q 025428          224 DTKL---------E--RQFQLVMDKGTL  240 (253)
Q Consensus       224 ~~~~---------~--~~fD~Vi~~~~l  240 (253)
                      +...         .  +..|+++.+.-+
T Consensus        87 ~~~~v~~~~~~~~~~~g~id~lv~nAg~  114 (286)
T 3uve_A           87 DYDALKAAVDSGVEQLGRLDIIVANAGI  114 (286)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCEEEECCcc
Confidence            7531         1  478998877644

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=84.36  E-value=2  Score=33.62  Aligned_cols=65  Identities=26%  Similarity=0.390  Sum_probs=41.4

Q ss_pred             CCCEEEEEcCCC-cHH-HHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----C-C-CCccEE
Q 025428          164 SSWSVLDIGTGN-GLL-LQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-E-RQFQLV  234 (253)
Q Consensus       164 ~~~~VLDiGcGt-G~~-~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----~-~-~~fD~V  234 (253)
                      .+.+|+=+|||. |.. +..|.+. |. +|+++|.+++.++.+++    .|   +.++.+|..+..    . . ..+|+|
T Consensus        38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~----~g---~~~~~gd~~~~~~l~~~~~~~~ad~v  109 (183)
T 3c85_A           38 GHAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRS----EG---RNVISGDATDPDFWERILDTGHVKLV  109 (183)
T ss_dssp             TTCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHH----TT---CCEEECCTTCHHHHHTBCSCCCCCEE
T ss_pred             CCCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHH----CC---CCEEEcCCCCHHHHHhccCCCCCCEE
Confidence            356888888762 322 3334445 66 89999999988776553    23   456777765421    1 2 468888


Q ss_pred             EE
Q 025428          235 MD  236 (253)
Q Consensus       235 i~  236 (253)
                      +.
T Consensus       110 i~  111 (183)
T 3c85_A          110 LL  111 (183)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=84.36  E-value=1.6  Score=38.74  Aligned_cols=46  Identities=22%  Similarity=0.250  Sum_probs=37.8

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      ...++.+||-+|+|. |.++..+++. |+.+|+++|.+++.++.+++.
T Consensus       179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l  226 (370)
T 4ej6_A          179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEV  226 (370)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            346788999999875 7778888876 776899999999998888764

>2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A*

Probab=84.31  E-value=4.8  Score=33.26  Aligned_cols=75  Identities=15%  Similarity=0.301  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc------------CC
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------------LE  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~------------~~  228 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+..            +.
T Consensus         8 ~~k~vlVTGas~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~~   85 (260)
T 2ae2_A            8 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHFH   85 (260)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            56788877765442   3444555677 899999999887766665554442 6888999998752            11


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-+
T Consensus        86 g~id~lv~~Ag~   97 (260)
T 2ae2_A           86 GKLNILVNNAGI   97 (260)
T ss_dssp             TCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            568998876643

>1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2

Probab=84.26  E-value=4.6  Score=33.55  Aligned_cols=75  Identities=21%  Similarity=0.277  Sum_probs=51.3

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc--CCCceEEEEeccCCCcC-----C-----
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD--GFSCIKFLVDDVLDTKL-----E-----  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~--g~~~i~~~~~D~~~~~~-----~-----  228 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...  + .++.++.+|+.+...     .     
T Consensus        12 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~   89 (267)
T 1iy8_A           12 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPD-AEVLTTVADVSDEAQVEAYVTATTER   89 (267)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTT-CCEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcCC-ceEEEEEccCCCHHHHHHHHHHHHHH
Confidence            56788888865542   3445556677 8999999998877666555433  3 368899999987531     1     


Q ss_pred             -CCccEEEEcccc
Q 025428          229 -RQFQLVMDKGTL  240 (253)
Q Consensus       229 -~~fD~Vi~~~~l  240 (253)
                       +..|+++.+.-+
T Consensus        90 ~g~id~lv~nAg~  102 (267)
T 1iy8_A           90 FGRIDGFFNNAGI  102 (267)
T ss_dssp             HSCCSEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence             367998876543

>1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2

Probab=84.16  E-value=5.2  Score=33.17  Aligned_cols=75  Identities=16%  Similarity=0.275  Sum_probs=51.7

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--~  229 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+...         .  +
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~g   83 (262)
T 1zem_A            6 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDFG   83 (262)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHHhC
Confidence            56788877765543   3445555677 899999999887776666554442 68899999987531         0  4


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus        84 ~id~lv~nAg~   94 (262)
T 1zem_A           84 KIDFLFNNAGY   94 (262)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68998876543

>1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A

Probab=84.12  E-value=7.2  Score=33.04  Aligned_cols=75  Identities=17%  Similarity=0.193  Sum_probs=47.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEE-EeccCCCcC-C---CCccE
Q 025428          163 LSSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFL-VDDVLDTKL-E---RQFQL  233 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~-~~D~~~~~~-~---~~fD~  233 (253)
                      .++.+||=.| |+|.++..++    +.|+ +|++++.++...+...+.+....-.+++++ .+|+.+... .   ..+|+
T Consensus         9 ~~~~~vlVTG-atG~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~   86 (342)
T 1y1p_A            9 PEGSLVLVTG-ANGFVASHVVEQLLEHGY-KVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAG   86 (342)
T ss_dssp             CTTCEEEEET-TTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSE
T ss_pred             CCCCEEEEEC-CccHHHHHHHHHHHHCCC-EEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCE
Confidence            3567888776 4566665554    4466 899999998766554443322111368888 799877531 1   36788


Q ss_pred             EEEccc
Q 025428          234 VMDKGT  239 (253)
Q Consensus       234 Vi~~~~  239 (253)
                      |+....
T Consensus        87 vih~A~   92 (342)
T 1y1p_A           87 VAHIAS   92 (342)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            886554

>3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei}

Probab=84.07  E-value=3.4  Score=34.72  Aligned_cols=76  Identities=17%  Similarity=0.244  Sum_probs=53.6

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C------
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~------  228 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+...     .      
T Consensus        26 l~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~  103 (270)
T 3ftp_A           26 LDKQVAIVTGASRGIGRAIALELARRGA-MVIGTATTEAGAEGIGAAFKQAGL-EGRGAVLNVNDATAVDALVESTLKEF  103 (270)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHTC-CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEEeCCCHHHHHHHHHHHHHHc
Confidence            356678877765543   3455566677 899999999888877777666553 67889999987531     1      


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-+
T Consensus       104 g~iD~lvnnAg~  115 (270)
T 3ftp_A          104 GALNVLVNNAGI  115 (270)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            468988876643

>3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A*

Probab=83.79  E-value=4.2  Score=33.68  Aligned_cols=76  Identities=13%  Similarity=0.059  Sum_probs=53.7

Q ss_pred             CCCEEEEEcCC--CcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C-----
Q 025428          164 SSWSVLDIGTG--NGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E-----  228 (253)
Q Consensus       164 ~~~~VLDiGcG--tG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~-----  228 (253)
                      .++++|=.|++  .|.   ++..|++.|+ +|+.++.++...+.+.+.....+-.++.++.+|+.+...     .     
T Consensus         6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~   84 (266)
T 3oig_A            6 EGRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQ   84 (266)
T ss_dssp             TTCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHH
T ss_pred             CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHH
Confidence            56789989876  333   4666777787 899999998766666666555443368999999988641     0     


Q ss_pred             -CCccEEEEcccc
Q 025428          229 -RQFQLVMDKGTL  240 (253)
Q Consensus       229 -~~fD~Vi~~~~l  240 (253)
                       +..|+++.+.-+
T Consensus        85 ~g~id~li~~Ag~   97 (266)
T 3oig_A           85 VGVIHGIAHCIAF   97 (266)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCeeEEEEcccc
Confidence             468888876543

>4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti}

Probab=83.68  E-value=2.6  Score=35.64  Aligned_cols=76  Identities=20%  Similarity=0.275  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--~  229 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+-..+.++.+|+.+...         .  +
T Consensus        32 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g  110 (281)
T 4dry_A           32 EGRIALVTGGGTGVGRGIAQALSAEGY-SVVITGRRPDVLDAAAGEIGGRTGNIVRAVVCDVGDPDQVAALFAAVRAEFA  110 (281)
T ss_dssp             --CEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence            56778877765543   3445556677 899999999888777766654433346899999987531         1  4


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus       111 ~iD~lvnnAG~  121 (281)
T 4dry_A          111 RLDLLVNNAGS  121 (281)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            67998876643

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=83.48  E-value=1.2  Score=39.31  Aligned_cols=45  Identities=24%  Similarity=0.223  Sum_probs=36.4

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~  205 (253)
                      +..++.+||-+|+|. |.++..+++. |+.+|+++|.+++.++.+++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  234 (373)
T 1p0f_A          188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIE  234 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            346788999999874 7777888876 77689999999998888765

>3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A*

Probab=83.15  E-value=4.6  Score=32.68  Aligned_cols=74  Identities=16%  Similarity=0.206  Sum_probs=50.6

Q ss_pred             CCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH-hcCCCceEEEEeccCCCc-----CC------C
Q 025428          165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLAN-RDGFSCIKFLVDDVLDTK-----LE------R  229 (253)
Q Consensus       165 ~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~-~~g~~~i~~~~~D~~~~~-----~~------~  229 (253)
                      ++++|=.|++.|.   ++..|+++|+ +|+.++.+++.++...+.+. ..+ .++.++.+|+.+..     +.      +
T Consensus         2 ~k~vlITGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g   79 (235)
T 3l77_A            2 MKVAVITGASRGIGEAIARALARDGY-ALALGARSVDRLEKIAHELMQEQG-VEVFYHHLDVSKAESVEEFSKKVLERFG   79 (235)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTCHHHHHHHCC-HHHHHS
T ss_pred             CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhcC-CeEEEEEeccCCHHHHHHHHHHHHHhcC
Confidence            3567777765442   3445555677 89999999988877766554 334 37899999998753     11      3


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus        80 ~id~li~~Ag~   90 (235)
T 3l77_A           80 DVDVVVANAGL   90 (235)
T ss_dssp             SCSEEEECCCC
T ss_pred             CCCEEEECCcc
Confidence            78998877654

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=83.09  E-value=1  Score=39.98  Aligned_cols=45  Identities=29%  Similarity=0.350  Sum_probs=36.9

Q ss_pred             cCCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       161 ~~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~  205 (253)
                      ...++.+||-+|+| .|.++..+++. |+.+|+++|.+++.++.+++
T Consensus       190 ~~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~  236 (378)
T 3uko_A          190 KVEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKK  236 (378)
T ss_dssp             CCCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHT
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            34678899999987 47888888877 77789999999998888765

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=83.00  E-value=1.3  Score=39.18  Aligned_cols=45  Identities=22%  Similarity=0.226  Sum_probs=36.2

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~  205 (253)
                      ...++.+||-+|+|. |.++..+++. |+.+|+++|.+++.++.+++
T Consensus       189 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  235 (374)
T 1cdo_A          189 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV  235 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            346788999999864 7777888876 66589999999998888775

>4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis}

Probab=82.94  E-value=3.6  Score=34.34  Aligned_cols=75  Identities=12%  Similarity=0.211  Sum_probs=53.3

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh-cCCCceEEEEeccCCCcC---------C--
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVDDVLDTKL---------E--  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~-~g~~~i~~~~~D~~~~~~---------~--  228 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++.+.+.+.. .+ .++.++.+|+.+...         .  
T Consensus        19 ~~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   96 (266)
T 4egf_A           19 DGKRALITGATKGIGADIARAFAAAGA-RLVLSGRDVSELDAARRALGEQFG-TDVHTVAIDLAEPDAPAELARRAAEAF   96 (266)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence            56788877766553   3455566677 899999999888877766654 34 378999999988641         0  


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-+
T Consensus        97 g~id~lv~nAg~  108 (266)
T 4egf_A           97 GGLDVLVNNAGI  108 (266)
T ss_dssp             TSCSEEEEECCC
T ss_pred             CCCCEEEECCCc
Confidence            478988876543

>3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A*

Probab=82.89  E-value=5.8  Score=32.77  Aligned_cols=75  Identities=16%  Similarity=0.198  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc-CCCceEEEEeccCCCcC-----C------
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKL-----E------  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~-g~~~i~~~~~D~~~~~~-----~------  228 (253)
                      .++++|=.|++.|.   ++..|+++|+ +|++++.+++.++...+.+... + .++.++.+|+.+...     .      
T Consensus         6 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   83 (263)
T 3ai3_A            6 SGKVAVITGSSSGIGLAIAEGFAKEGA-HIVLVARQVDRLHEAARSLKEKFG-VRVLEVAVDVATPEGVDAVVESVRSSF   83 (263)
T ss_dssp             TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHC-CCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence            45678877765442   3444555677 8999999998776665554433 4 268899999987531     1      


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-+
T Consensus        84 g~id~lv~~Ag~   95 (263)
T 3ai3_A           84 GGADILVNNAGT   95 (263)
T ss_dssp             SSCSEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368988876543

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=82.88  E-value=8.1  Score=28.06  Aligned_cols=64  Identities=16%  Similarity=0.153  Sum_probs=40.1

Q ss_pred             CCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----C-CCCccEEE
Q 025428          165 SWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----L-ERQFQLVM  235 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----~-~~~fD~Vi  235 (253)
                      +.+|+=+|+  |.++..++    +.|. +|+++|.+++.++..++.   .   ++.++.+|..+..    . -..+|+|+
T Consensus         4 ~m~i~IiG~--G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~---~---~~~~~~~d~~~~~~l~~~~~~~~d~vi   74 (140)
T 1lss_A            4 GMYIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAE---I---DALVINGDCTKIKTLEDAGIEDADMYI   74 (140)
T ss_dssp             -CEEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH---C---SSEEEESCTTSHHHHHHTTTTTCSEEE
T ss_pred             CCEEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHh---c---CcEEEEcCCCCHHHHHHcCcccCCEEE
Confidence            357888887  55544443    4465 899999999877655432   1   3456777765432    1 24688888


Q ss_pred             Ec
Q 025428          236 DK  237 (253)
Q Consensus       236 ~~  237 (253)
                      ..
T Consensus        75 ~~   76 (140)
T 1lss_A           75 AV   76 (140)
T ss_dssp             EC
T ss_pred             Ee
Confidence            64

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=82.85  E-value=1.9  Score=37.65  Aligned_cols=44  Identities=25%  Similarity=0.240  Sum_probs=35.6

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~  205 (253)
                      +..++.+||-+|+|. |.++..+++. |+ +|+++|.+++.++.+++
T Consensus       165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~  210 (352)
T 1e3j_A          165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKN  210 (352)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHH
Confidence            346788999999874 7777788776 66 69999999998888875

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=82.82  E-value=1.4  Score=38.87  Aligned_cols=46  Identities=28%  Similarity=0.322  Sum_probs=36.8

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      +..++.+||-+|+|. |.++..+++. |+.+|+++|.+++.++.+++.
T Consensus       187 ~~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~l  234 (373)
T 2fzw_A          187 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF  234 (373)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHc
Confidence            346788999999874 7777777776 776899999999988888753

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=82.68  E-value=1.4  Score=35.03  Aligned_cols=43  Identities=16%  Similarity=0.131  Sum_probs=32.6

Q ss_pred             CCCCCEEEEEcC--CCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       162 ~~~~~~VLDiGc--GtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~  205 (253)
                      ..++.+||..|+  |.|..+..++.. |+ +|+++|.+++.++.+++
T Consensus        36 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~   81 (198)
T 1pqw_A           36 LSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSR   81 (198)
T ss_dssp             CCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHT
T ss_pred             CCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHH
Confidence            357789999994  567666666654 76 89999999988776653

>4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum}

Probab=82.67  E-value=2.3  Score=35.81  Aligned_cols=76  Identities=13%  Similarity=0.150  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~  228 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+...           -
T Consensus        24 l~gk~~lVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~~  101 (271)
T 4ibo_A           24 LGGRTALVTGSSRGLGRAMAEGLAVAGA-RILINGTDPSRVAQTVQEFRNVGH-DAEAVAFDVTSESEIIEAFARLDEQG  101 (271)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTC-CEEECCCCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHHHHHHC
Confidence            366788877765543   3455566677 899999999988887777766553 78899999987531           1


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-+
T Consensus       102 g~iD~lv~nAg~  113 (271)
T 4ibo_A          102 IDVDILVNNAGI  113 (271)
T ss_dssp             CCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            468998876643

>3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0

Probab=82.63  E-value=6.6  Score=32.81  Aligned_cols=76  Identities=18%  Similarity=0.234  Sum_probs=53.7

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeC-------------CHHHHHHHHHHHHhcCCCceEEEEeccCCCc
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-------------SEDAINLAQSLANRDGFSCIKFLVDDVLDTK  226 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~-------------s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~  226 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.+|.             +++.++...+.+...+. ++.++.+|+.+..
T Consensus         9 l~~k~~lVTGas~GIG~a~a~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~   86 (277)
T 3tsc_A            9 LEGRVAFITGAARGQGRAHAVRMAAEGA-DIIAVDIAGKLPSCVPYDPASPDDLSETVRLVEAANR-RIVAAVVDTRDFD   86 (277)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEECCSCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHH
T ss_pred             cCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeccccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHH
Confidence            356788888876654   4556666777 8999998             67777776666655553 7889999998753


Q ss_pred             C----------C-CCccEEEEcccc
Q 025428          227 L----------E-RQFQLVMDKGTL  240 (253)
Q Consensus       227 ~----------~-~~fD~Vi~~~~l  240 (253)
                      .          . +..|+++.+.-+
T Consensus        87 ~v~~~~~~~~~~~g~id~lvnnAg~  111 (277)
T 3tsc_A           87 RLRKVVDDGVAALGRLDIIVANAGV  111 (277)
T ss_dssp             HHHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCEEEECCCC
Confidence            1          0 468988876643

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=82.61  E-value=2  Score=38.49  Aligned_cols=46  Identities=30%  Similarity=0.276  Sum_probs=37.2

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      ...++.+||=+|+|. |.++..+++. |+.+|+++|.+++.++.+++.
T Consensus       210 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~l  257 (404)
T 3ip1_A          210 GIRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKEL  257 (404)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHc
Confidence            346788999999864 7777777776 776899999999999988764

>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A*

Probab=82.30  E-value=4.6  Score=33.91  Aligned_cols=75  Identities=15%  Similarity=0.139  Sum_probs=52.3

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHh-cCCCceEEEEeccCCCcC---------C-
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANR-DGFSCIKFLVDDVLDTKL---------E-  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~-~g~~~i~~~~~D~~~~~~---------~-  228 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.++.+.+.++...+.+.. .+ .++.++.+|+.+...         . 
T Consensus        25 l~~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~  102 (277)
T 4fc7_A           25 LRDKVAFITGGGSGIGFRIAEIFMRHGC-HTVIASRSLPRVLTAARKLAGATG-RRCLPLSMDVRAPPAVMAAVDQALKE  102 (277)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHHHS-SCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            356788888876553   3455566677 999999998877666555533 23 378999999987531         1 


Q ss_pred             -CCccEEEEccc
Q 025428          229 -RQFQLVMDKGT  239 (253)
Q Consensus       229 -~~fD~Vi~~~~  239 (253)
                       +..|+++.+.-
T Consensus       103 ~g~id~lv~nAg  114 (277)
T 4fc7_A          103 FGRIDILINCAA  114 (277)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCCCEEEECCc
Confidence             47898887664

>2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A*

Probab=82.26  E-value=8.6  Score=33.39  Aligned_cols=77  Identities=9%  Similarity=0.047  Sum_probs=57.7

Q ss_pred             CEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC---CceEEEEeccCCCc--------CC-CCccE
Q 025428          166 WSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF---SCIKFLVDDVLDTK--------LE-RQFQL  233 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~---~~i~~~~~D~~~~~--------~~-~~fD~  233 (253)
                      ..||+||||-=.....+......+++=+| .|..++..++.+...+.   .+..++.+|+.+-.        ++ ...-+
T Consensus       104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d~~~~~l~~~g~d~~~Pt~  182 (310)
T 2uyo_A          104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA  182 (310)
T ss_dssp             CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred             CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHhhHHHHHHhccCCCCCCEE
Confidence            57999999988887777632124899999 59999999999875432   36889999998721        11 34567


Q ss_pred             EEEcccccee
Q 025428          234 VMDKGTLDAI  243 (253)
Q Consensus       234 Vi~~~~l~~i  243 (253)
                      +++-++|+++
T Consensus       183 ~i~Egvl~Yl  192 (310)
T 2uyo_A          183 WLAEGLLMYL  192 (310)
T ss_dssp             EEECSCGGGS
T ss_pred             EEEechHhhC
Confidence            8889999987

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=82.17  E-value=2.2  Score=37.50  Aligned_cols=45  Identities=22%  Similarity=0.270  Sum_probs=36.6

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      +..++.+||-+|+|. |.++..+++. |+ +|+++|.+++.++.+++.
T Consensus       186 ~~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~l  232 (363)
T 3uog_A          186 HLRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFAL  232 (363)
T ss_dssp             CCCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHc
Confidence            346788999999874 7777788876 66 999999999988887764

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=82.12  E-value=1.5  Score=38.83  Aligned_cols=45  Identities=27%  Similarity=0.330  Sum_probs=36.1

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~  205 (253)
                      ...++.+||-+|+|. |.++..+++. |+.+|+++|.+++.++.+++
T Consensus       188 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~  234 (374)
T 2jhf_A          188 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE  234 (374)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            346788999999874 7777788776 66589999999998888764

>3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0

Probab=82.09  E-value=7  Score=32.66  Aligned_cols=75  Identities=17%  Similarity=0.215  Sum_probs=52.5

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCC------------HHHHHHHHHHHHhcCCCceEEEEeccCCCcC-
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-  227 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s------------~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-  227 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.+|.+            .+.++...+.+...+ .++.++.+|+.+... 
T Consensus         9 ~~k~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v   86 (281)
T 3s55_A            9 EGKTALITGGARGMGRSHAVALAEAGA-DIAICDRCENSDVVGYPLATADDLAETVALVEKTG-RRCISAKVDVKDRAAL   86 (281)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTCSSCCCCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHH
T ss_pred             CCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCccccccccccccHHHHHHHHHHHHhcC-CeEEEEeCCCCCHHHH
Confidence            56788888876653   3555666677 89999997            666666665555555 378999999987531 


Q ss_pred             ----C------CCccEEEEcccc
Q 025428          228 ----E------RQFQLVMDKGTL  240 (253)
Q Consensus       228 ----~------~~fD~Vi~~~~l  240 (253)
                          .      +..|+++.+.-+
T Consensus        87 ~~~~~~~~~~~g~id~lv~nAg~  109 (281)
T 3s55_A           87 ESFVAEAEDTLGGIDIAITNAGI  109 (281)
T ss_dssp             HHHHHHHHHHHTCCCEEEECCCC
T ss_pred             HHHHHHHHHhcCCCCEEEECCCC
Confidence                1      478998876654

>3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti}

Probab=82.08  E-value=2.4  Score=35.91  Aligned_cols=74  Identities=14%  Similarity=0.156  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------C-C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------E-R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------~-~  229 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+ .++.++.+|+.+...          . +
T Consensus         7 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   84 (280)
T 3tox_A            7 EGKIAIVTGASSGIGRAAALLFAREGA-KVVVTARNGNALAELTDEIAGGG-GEAAALAGDVGDEALHEALVELAVRRFG   84 (280)
T ss_dssp             TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHTTTT-CCEEECCCCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence            56788887876553   3455666677 89999999998887777665444 368899999987531          1 4


Q ss_pred             CccEEEEccc
Q 025428          230 QFQLVMDKGT  239 (253)
Q Consensus       230 ~fD~Vi~~~~  239 (253)
                      ..|+++.+.-
T Consensus        85 ~iD~lvnnAg   94 (280)
T 3tox_A           85 GLDTAFNNAG   94 (280)
T ss_dssp             CCCEEEECCC
T ss_pred             CCCEEEECCC
Confidence            6898887654

>4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti}

Probab=82.08  E-value=6.9  Score=32.91  Aligned_cols=76  Identities=14%  Similarity=0.252  Sum_probs=53.2

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeC-CHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C-----
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E-----  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~-s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~-----  228 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.++. +++.++...+.+...+. ++.++.+|+.+...     .     
T Consensus        27 ~~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~v~~~~~~~~~~  104 (280)
T 4da9_A           27 KARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGA-RVIFLRADLADLSSHQATVDAVVAE  104 (280)
T ss_dssp             CCCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTC-CEEEEECCTTSGGGHHHHHHHHHHH
T ss_pred             cCCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHHHHHH
Confidence            356788888876653   4555666677 8999995 77777776666655553 78999999988641     1     


Q ss_pred             -CCccEEEEcccc
Q 025428          229 -RQFQLVMDKGTL  240 (253)
Q Consensus       229 -~~fD~Vi~~~~l  240 (253)
                       +..|+++.+.-+
T Consensus       105 ~g~iD~lvnnAg~  117 (280)
T 4da9_A          105 FGRIDCLVNNAGI  117 (280)
T ss_dssp             HSCCCEEEEECC-
T ss_pred             cCCCCEEEECCCc
Confidence             378998876644

>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}

Probab=82.06  E-value=2.8  Score=35.40  Aligned_cols=76  Identities=14%  Similarity=0.196  Sum_probs=53.8

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C-----C
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E-----R  229 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~-----~  229 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+ .++.++.+|+.+...     .     +
T Consensus        31 l~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~~~~~~~~~~~~g  108 (275)
T 4imr_A           31 LRGRTALVTGSSRGIGAAIAEGLAGAGA-HVILHGVKPGSTAAVQQRIIASG-GTAQELAGDLSEAGAGTDLIERAEAIA  108 (275)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSTTTTHHHHHHHHHTT-CCEEEEECCTTSTTHHHHHHHHHHHHS
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEecCCCHHHHHHHHHHHHHhC
Confidence            366788877766543   3455556677 89999999888777777666555 378999999987631     0     4


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus       109 ~iD~lvnnAg~  119 (275)
T 4imr_A          109 PVDILVINASA  119 (275)
T ss_dssp             CCCEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68988876643

>1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=82.02  E-value=5.1  Score=33.59  Aligned_cols=76  Identities=17%  Similarity=0.279  Sum_probs=51.2

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCcC-----C-----
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL-----E-----  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~~-----~-----  228 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+..  ++.++.+|+.+...     .     
T Consensus         5 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   83 (280)
T 1xkq_A            5 SNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQ   83 (280)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcceEEEEecCCCHHHHHHHHHHHHHh
Confidence            45677777755442   3444555677 8999999998887766665544421  68899999987531     1     


Q ss_pred             -CCccEEEEcccc
Q 025428          229 -RQFQLVMDKGTL  240 (253)
Q Consensus       229 -~~fD~Vi~~~~l  240 (253)
                       +..|+++.+.-+
T Consensus        84 ~g~iD~lv~nAg~   96 (280)
T 1xkq_A           84 FGKIDVLVNNAGA   96 (280)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             368999877643

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=81.76  E-value=1.5  Score=38.72  Aligned_cols=45  Identities=22%  Similarity=0.205  Sum_probs=36.1

Q ss_pred             cCCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       161 ~~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~  205 (253)
                      ...++.+||-+|+| .|.++..+++. |+.+|+++|.+++.++.+++
T Consensus       192 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  238 (376)
T 1e3i_A          192 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA  238 (376)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence            34678899999987 47777788876 66689999999998888765

>2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens}

Probab=81.75  E-value=4.8  Score=33.27  Aligned_cols=72  Identities=13%  Similarity=0.103  Sum_probs=49.4

Q ss_pred             CCCEEEEEcCCCcHHHH----HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC------------
Q 025428          164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------------  227 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~----~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~------------  227 (253)
                      .++++|=.|++ |.++.    .|++.|+ +|+.++.+++.++...+.+...+ .++.++.+|+.+...            
T Consensus         4 ~~k~vlVTGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T 2qq5_A            4 NGQVCVVTGAS-RGIGRGIALQLCKAGA-TVYITGRHLDTLRVVAQEAQSLG-GQCVPVVCDSSQESEVRSLFEQVDREQ   80 (260)
T ss_dssp             TTCEEEESSTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHS-SEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCC-chHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHcC-CceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            45677777754 44444    4455577 89999999988776666554444 368899999987520            


Q ss_pred             CCCccEEEEcc
Q 025428          228 ERQFQLVMDKG  238 (253)
Q Consensus       228 ~~~fD~Vi~~~  238 (253)
                      .+..|+++.+.
T Consensus        81 ~g~id~lvnnA   91 (260)
T 2qq5_A           81 QGRLDVLVNNA   91 (260)
T ss_dssp             TTCCCEEEECC
T ss_pred             CCCceEEEECC
Confidence            24679988876

>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*

Probab=81.70  E-value=1.7  Score=39.54  Aligned_cols=62  Identities=18%  Similarity=0.221  Sum_probs=43.9

Q ss_pred             CCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----C-CCccEEE
Q 025428          165 SWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----E-RQFQLVM  235 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~-~~fD~Vi  235 (253)
                      ..+|+=+|+|  .++..++    ..|. .|+++|.+++.++.+++    .   .+.++.||..+...    . ...|+|+
T Consensus         4 ~~~viIiG~G--r~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~----~---g~~vi~GDat~~~~L~~agi~~A~~vi   73 (413)
T 3l9w_A            4 GMRVIIAGFG--RFGQITGRLLLSSGV-KMVVLDHDPDHIETLRK----F---GMKVFYGDATRMDLLESAGAAKAEVLI   73 (413)
T ss_dssp             CCSEEEECCS--HHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHH----T---TCCCEESCTTCHHHHHHTTTTTCSEEE
T ss_pred             CCeEEEECCC--HHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHh----C---CCeEEEcCCCCHHHHHhcCCCccCEEE
Confidence            3578888875  4444444    3466 89999999999988874    2   45688999987531    2 5688877


Q ss_pred             E
Q 025428          236 D  236 (253)
Q Consensus       236 ~  236 (253)
                      +
T Consensus        74 v   74 (413)
T 3l9w_A           74 N   74 (413)
T ss_dssp             E
T ss_pred             E
Confidence            6

>4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens}

Probab=81.69  E-value=6.1  Score=33.26  Aligned_cols=74  Identities=18%  Similarity=0.282  Sum_probs=50.7

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC------CCCccE
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL------ERQFQL  233 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~------~~~fD~  233 (253)
                      .+++++|=-|.+.|.   ++..|++.|+ +|+.+|.+..  +.+.+.++..|. ++.++++|+.+...      .+..|+
T Consensus         7 L~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~--~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~g~iDi   82 (247)
T 4hp8_A            7 LEGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAP--DETLDIIAKDGG-NASALLIDFADPLAAKDSFTDAGFDI   82 (247)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTTC-CEEEEECCTTSTTTTTTSSTTTCCCE
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcH--HHHHHHHHHhCC-cEEEEEccCCCHHHHHHHHHhCCCCE
Confidence            467788888877775   4667777787 8999998753  233344444553 78899999877531      256888


Q ss_pred             EEEcccc
Q 025428          234 VMDKGTL  240 (253)
Q Consensus       234 Vi~~~~l  240 (253)
                      ++.+.-+
T Consensus        83 LVNNAGi   89 (247)
T 4hp8_A           83 LVNNAGI   89 (247)
T ss_dssp             EEECCCC
T ss_pred             EEECCCC
Confidence            8876543

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=81.67  E-value=1.6  Score=38.74  Aligned_cols=44  Identities=20%  Similarity=0.191  Sum_probs=36.3

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQS  205 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~  205 (253)
                      ...++.+||-+|+|. |.++..+++. |+ +|++++.+++.++.+++
T Consensus       191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~  236 (369)
T 1uuf_A          191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKA  236 (369)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHH
Confidence            346788999999974 7788888876 66 79999999998888876

>1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2

Probab=81.59  E-value=6.9  Score=32.63  Aligned_cols=75  Identities=15%  Similarity=0.205  Sum_probs=51.4

Q ss_pred             CCCEEEEEcCCCcHHHH----HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC-----C-----
Q 025428          164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL-----E-----  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~----~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~-----~-----  228 (253)
                      .++++|=.|++ |.++.    .|++.|+ +|++++.++..++...+.+...+.. ++.++.+|+.+...     .     
T Consensus        31 ~~k~vlVTGas-ggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~  108 (279)
T 1xg5_A           31 RDRLALVTGAS-GGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ  108 (279)
T ss_dssp             TTCEEEEESTT-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-chHHHHHHHHHHHCCC-EEEEEECChHHHHHHHHHHHhcCCCceEEEEEecCCCHHHHHHHHHHHHHh
Confidence            56678877754 44444    4445577 8999999998887776666655542 58889999987531     1     


Q ss_pred             -CCccEEEEcccc
Q 025428          229 -RQFQLVMDKGTL  240 (253)
Q Consensus       229 -~~fD~Vi~~~~l  240 (253)
                       +.+|+|+.+..+
T Consensus       109 ~g~iD~vi~~Ag~  121 (279)
T 1xg5_A          109 HSGVDICINNAGL  121 (279)
T ss_dssp             HCCCSEEEECCCC
T ss_pred             CCCCCEEEECCCC
Confidence             368988876543

>4iin_A 3-ketoacyl-acyl carrier protein reductase (FABG); structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.40A {Helicobacter pylori} PDB: 4ijk_A

Probab=81.58  E-value=5.8  Score=33.02  Aligned_cols=75  Identities=11%  Similarity=0.186  Sum_probs=51.9

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeC-CHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDY-SEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~-s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~  228 (253)
                      .+++||=.|++.|.   ++..|+++|+ +|+.++. ++...+...+.++..+. ++.++.+|+.+...           .
T Consensus        28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~v~~~~~~~~~~~  105 (271)
T 4iin_A           28 TGKNVLITGASKGIGAEIAKTLASMGL-KVWINYRSNAEVADALKNELEEKGY-KAAVIKFDAASESDFIEAIQTIVQSD  105 (271)
T ss_dssp             SCCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCC-ceEEEECCCCCHHHHHHHHHHHHHhc
Confidence            56788887776553   3455556677 8999998 66666666666665553 78999999987531           1


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-+
T Consensus       106 g~id~li~nAg~  117 (271)
T 4iin_A          106 GGLSYLVNNAGV  117 (271)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEEEECCCc
Confidence            478988876543

>1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A*

Probab=81.52  E-value=5.8  Score=32.31  Aligned_cols=73  Identities=12%  Similarity=0.120  Sum_probs=49.7

Q ss_pred             CCCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C------
Q 025428          164 SSWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~------  228 (253)
                      .+++||=.| |+|.++..++    +.|+ +|++++.++..++...+.+...+ .++.++.+|+.+...     .      
T Consensus        10 ~~~~vlVtG-asggiG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~   86 (255)
T 1fmc_A           10 DGKCAIITG-AGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLG-GQAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             TTCEEEETT-TTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEC-CccHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHHhC-CceEEEEcCCCCHHHHHHHHHHHHHhc
Confidence            456777666 4566655554    4476 89999999987776666555444 368899999987531     1      


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      +.+|+|+.+..
T Consensus        87 ~~~d~vi~~Ag   97 (255)
T 1fmc_A           87 GKVDILVNNAG   97 (255)
T ss_dssp             SSCCEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            37898887654

>2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A*

Probab=81.52  E-value=6.3  Score=32.48  Aligned_cols=74  Identities=8%  Similarity=0.090  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCCcHHHH----HHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----C------
Q 025428          164 SSWSVLDIGTGNGLLLQ----ELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----E------  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~----~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~------  228 (253)
                      .++++|=.|++ |.++.    .|++.|+ +|+.++.+++.++...+.+...+. ++.++.+|+.+...     .      
T Consensus        13 ~~k~vlVTGas-~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~~~~~~   89 (260)
T 2zat_A           13 ENKVALVTAST-DGIGLAIARRLAQDGA-HVVVSSRKQENVDRTVATLQGEGL-SVTGTVCHVGKAEDRERLVAMAVNLH   89 (260)
T ss_dssp             TTCEEEESSCS-SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEECCC-cHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            45677777654 44444    4455577 899999999877766665554443 68889999877431     1      


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+..+
T Consensus        90 g~iD~lv~~Ag~  101 (260)
T 2zat_A           90 GGVDILVSNAAV  101 (260)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            368998876543

>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}

Probab=81.50  E-value=1.9  Score=39.67  Aligned_cols=62  Identities=15%  Similarity=0.214  Sum_probs=45.0

Q ss_pred             CEEEEEcCCCcHHHHHHHhc----CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----C-CCccEEEE
Q 025428          166 WSVLDIGTGNGLLLQELSKQ----GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----E-RQFQLVMD  236 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~----g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~-~~fD~Vi~  236 (253)
                      .+|+=+|||  .++..+++.    |. .|+.+|.+++.++.+.+++      ++..++||..+...    . +..|++++
T Consensus         4 M~iiI~G~G--~vG~~la~~L~~~~~-~v~vId~d~~~~~~~~~~~------~~~~i~Gd~~~~~~L~~Agi~~ad~~ia   74 (461)
T 4g65_A            4 MKIIILGAG--QVGGTLAENLVGENN-DITIVDKDGDRLRELQDKY------DLRVVNGHASHPDVLHEAGAQDADMLVA   74 (461)
T ss_dssp             EEEEEECCS--HHHHHHHHHTCSTTE-EEEEEESCHHHHHHHHHHS------SCEEEESCTTCHHHHHHHTTTTCSEEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHhc------CcEEEEEcCCCHHHHHhcCCCcCCEEEE
Confidence            467766665  555555554    44 8999999999998777652      56899999988642    2 67888876

>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2

Probab=81.48  E-value=7  Score=32.15  Aligned_cols=72  Identities=24%  Similarity=0.358  Sum_probs=48.5

Q ss_pred             CEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCCc
Q 025428          166 WSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQF  231 (253)
Q Consensus       166 ~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~f  231 (253)
                      +++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+ .++.++.+|+.+...           -+..
T Consensus         3 k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~v~~~~~~~~~~~g~i   80 (256)
T 1geg_A            3 KVALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAG-GHAVAVKVDVSDRDQVFAAVEQARKTLGGF   80 (256)
T ss_dssp             CEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTT-CCEEEEECCTTSHHHHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHHHHhCCC
Confidence            467777755442   3344555677 89999999987776666555444 268899999987531           1378


Q ss_pred             cEEEEccc
Q 025428          232 QLVMDKGT  239 (253)
Q Consensus       232 D~Vi~~~~  239 (253)
                      |+++.+.-
T Consensus        81 d~lv~nAg   88 (256)
T 1geg_A           81 DVIVNNAG   88 (256)
T ss_dssp             CEEEECCC
T ss_pred             CEEEECCC
Confidence            99887654

>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}

Probab=81.37  E-value=2.8  Score=33.89  Aligned_cols=61  Identities=11%  Similarity=0.088  Sum_probs=41.6

Q ss_pred             EEEEEcCCCcHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----C-CCccEEEE
Q 025428          167 SVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----E-RQFQLVMD  236 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~----~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~-~~fD~Vi~  236 (253)
                      +|+=+|+  |.++..+++    .|. .|+.+|.+++.++...+.   .   ++.++.+|..+...    . ..+|+|++
T Consensus         2 ~iiIiG~--G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~---~---~~~~i~gd~~~~~~l~~a~i~~ad~vi~   71 (218)
T 3l4b_C            2 KVIIIGG--ETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKK---L---KATIIHGDGSHKEILRDAEVSKNDVVVI   71 (218)
T ss_dssp             CEEEECC--HHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHH---S---SSEEEESCTTSHHHHHHHTCCTTCEEEE
T ss_pred             EEEEECC--CHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH---c---CCeEEEcCCCCHHHHHhcCcccCCEEEE
Confidence            4566665  666655554    466 899999999988765432   1   46789999877431    1 56888876

>3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A*

Probab=80.82  E-value=7.8  Score=32.84  Aligned_cols=75  Identities=16%  Similarity=0.096  Sum_probs=52.7

Q ss_pred             CCCCEEEEEcCCCc-----HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------
Q 025428          163 LSSWSVLDIGTGNG-----LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG-----~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------  227 (253)
                      ..++++|=.|++.|     .++..|++.|+ +|+.++.++...+.+++..+..+  ++.++.+|+.+...          
T Consensus        29 l~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~  105 (293)
T 3grk_A           29 LQGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELG--AFVAGHCDVADAASIDAVFETLEK  105 (293)
T ss_dssp             TTTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHT--CEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcC--CceEEECCCCCHHHHHHHHHHHHH
Confidence            46788999997633     25666777787 89999999876666555544443  57899999987531          


Q ss_pred             -CCCccEEEEcccc
Q 025428          228 -ERQFQLVMDKGTL  240 (253)
Q Consensus       228 -~~~fD~Vi~~~~l  240 (253)
                       -+..|+++.+.-+
T Consensus       106 ~~g~iD~lVnnAG~  119 (293)
T 3grk_A          106 KWGKLDFLVHAIGF  119 (293)
T ss_dssp             HTSCCSEEEECCCC
T ss_pred             hcCCCCEEEECCcc
Confidence             1478998876543

>2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa}

Probab=80.75  E-value=4.1  Score=34.31  Aligned_cols=74  Identities=12%  Similarity=0.126  Sum_probs=50.1

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~  229 (253)
                      .++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+...+  ++.++.+|+.+...           -+
T Consensus        28 ~~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~v~~~~~~~~~~~g  104 (276)
T 2b4q_A           28 AGRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYG--DCQAIPADLSSEAGARRLAQALGELSA  104 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSS--CEEECCCCTTSHHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcC--ceEEEEeeCCCHHHHHHHHHHHHHhcC
Confidence            56788888865442   3444555677 89999999987776655554333  67888899877421           14


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-+
T Consensus       105 ~iD~lvnnAg~  115 (276)
T 2b4q_A          105 RLDILVNNAGT  115 (276)
T ss_dssp             CCSEEEECCCC
T ss_pred             CCCEEEECCCC
Confidence            68998876643

>3oec_A Carveol dehydrogenase (mytha.01326.C, A0R518 HOMO; ssgcid, structural genomics; 1.95A {Mycobacterium thermoresistibile}

Probab=80.69  E-value=6.5  Score=33.76  Aligned_cols=76  Identities=17%  Similarity=0.239  Sum_probs=52.5

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCC------------HHHHHHHHHHHHhcCCCceEEEEeccCCCcC
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS------------EDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s------------~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~  227 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.+|.+            ++.++...+.+...+. ++.++.+|+.+...
T Consensus        44 l~gk~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dv~d~~~  121 (317)
T 3oec_A           44 LQGKVAFITGAARGQGRTHAVRLAQDGA-DIVAIDLCRQQPNLDYAQGSPEELKETVRLVEEQGR-RIIARQADVRDLAS  121 (317)
T ss_dssp             TTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEECCCCCTTCCSCCCCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-eEEEEecccccccccccccCHHHHHHHHHHHHhcCC-eEEEEECCCCCHHH
Confidence            356788888876553   3555666677 89999986            6666666665555553 78999999987531


Q ss_pred             ---------C--CCccEEEEcccc
Q 025428          228 ---------E--RQFQLVMDKGTL  240 (253)
Q Consensus       228 ---------~--~~fD~Vi~~~~l  240 (253)
                               .  +..|+++.+.-+
T Consensus       122 v~~~~~~~~~~~g~iD~lVnnAg~  145 (317)
T 3oec_A          122 LQAVVDEALAEFGHIDILVSNVGI  145 (317)
T ss_dssp             HHHHHHHHHHHHSCCCEEEECCCC
T ss_pred             HHHHHHHHHHHcCCCCEEEECCCC
Confidence                     1  478998877643

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=80.28  E-value=7.1  Score=27.43  Aligned_cols=65  Identities=18%  Similarity=0.212  Sum_probs=43.2

Q ss_pred             CCEEEEEcCCCcHHHHHHH----hcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----CCCccEEEE
Q 025428          165 SWSVLDIGTGNGLLLQELS----KQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMD  236 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la----~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~~~fD~Vi~  236 (253)
                      ..+|+=+|+  |.++..++    ..|..+|+++|.+++.++...    .   .++.++..|+.+...    -..+|+|+.
T Consensus         5 ~~~v~I~G~--G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~----~---~~~~~~~~d~~~~~~~~~~~~~~d~vi~   75 (118)
T 3ic5_A            5 RWNICVVGA--GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN----R---MGVATKQVDAKDEAGLAKALGGFDAVIS   75 (118)
T ss_dssp             CEEEEEECC--SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH----T---TTCEEEECCTTCHHHHHHHTTTCSEEEE
T ss_pred             cCeEEEECC--CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH----h---CCCcEEEecCCCHHHHHHHHcCCCEEEE
Confidence            458999998  55554444    446348999999998776554    1   256778888876421    146898886


Q ss_pred             cc
Q 025428          237 KG  238 (253)
Q Consensus       237 ~~  238 (253)
                      ..
T Consensus        76 ~~   77 (118)
T 3ic5_A           76 AA   77 (118)
T ss_dssp             CS
T ss_pred             CC
Confidence            54

>1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2

Probab=80.23  E-value=8.2  Score=32.15  Aligned_cols=76  Identities=18%  Similarity=0.203  Sum_probs=50.3

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHH-HhcCCCceEEEEeccCCCcC-----C-----
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLA-NRDGFSCIKFLVDDVLDTKL-----E-----  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~-~~~g~~~i~~~~~D~~~~~~-----~-----  228 (253)
                      ..++++|=.|++.|.   ++..|++.|+ +|+.++.+++.++...+.+ ...+. ++.++.+|+.+...     .     
T Consensus        19 l~~k~~lVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~Dl~~~~~v~~~~~~~~~~   96 (267)
T 1vl8_A           19 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEK   96 (267)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHH
Confidence            356788888765442   3444555677 8999999988776665554 33342 68889999987521     0     


Q ss_pred             -CCccEEEEcccc
Q 025428          229 -RQFQLVMDKGTL  240 (253)
Q Consensus       229 -~~fD~Vi~~~~l  240 (253)
                       +..|+++.+.-+
T Consensus        97 ~g~iD~lvnnAg~  109 (267)
T 1vl8_A           97 FGKLDTVVNAAGI  109 (267)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCc
Confidence             368998876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	253
d1ri5a_	252	c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf	2e-07
d2fyta1	311	c.66.1.6 (A:238-548) Protein arginine N-methyltran	8e-06
d2p7ia1	225	c.66.1.41 (A:22-246) Hypothetical protein ECA1738	5e-05
d1g6q1_	328	c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba	6e-05
d1ne2a_	197	c.66.1.32 (A:) Hypothetical protein Ta1320 {Archae	4e-04
d1vl5a_	231	c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill	7e-04
d2a14a1	257	c.66.1.15 (A:5-261) Indolethylamine N-methyltransf	0.001
d1oria_	316	c.66.1.6 (A:) Protein arginine N-methyltransferase	0.001
d1pjza_	201	c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse	0.002
d1xxla_	234	c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus	0.003
d2g72a1	263	c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr	0.003

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

 Score = 48.4 bits (114), Expect = 2e-07
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDT 225
           SVLD+G G G  L +  + G  +  GVD +E +IN A+  A        + F   D    
Sbjct: 27  SVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGR 86

Query: 226 KLERQFQLVM 235
            ++   +  +
Sbjct: 87  HMDLGKEFDV 96

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (102), Expect = 8e-06
 Identities = 24/101 (23%), Positives = 36/101 (35%), Gaps = 8/101 (7%)

Query: 140 SQGHMLNHVEDLKSEP--------VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLT 191
           S GH   H E LK +         + +N        VLD+G G G+L    +K G   + 
Sbjct: 3   SYGHYGIHEEMLKDKIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVL 62

Query: 192 GVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQ 232
           GVD SE        +        I  +   + +  L  +  
Sbjct: 63  GVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVHLPVEKV 103

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} Length = 225

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)

Query: 161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201
            +    ++L++G+  G     L +    D+T V+ SE+AI+
Sbjct: 17  PFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAIS 56

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (95), Expect = 6e-05
 Identities = 23/97 (23%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 140 SQGHMLNHVEDLKSEP--------VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLT 191
           S  H   H E L+           + +N        VLD+G G G+L    +K G   + 
Sbjct: 6   SYDHYGIHEEMLQDTVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVI 65

Query: 192 GVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE 228
           GVD S       + +        I  L   + D  L 
Sbjct: 66  GVDMSSIIEMAKELVELNGFSDKITLLRGKLEDVHLP 102

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 197

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.2 bits (88), Expect = 4e-04
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 7/91 (7%)

Query: 163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDV 222
           +   SV+D GTGNG+L       G   +T  D   DAI  A+       F          
Sbjct: 47  IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCGGVNFMVADV----- 101

Query: 223 LDTKLERQFQLVMDKGTLDAIGLHPDGPLKR 253
             +++  ++   +      ++  H D     
Sbjct: 102 --SEISGKYDTWIMNPPFGSVVKHSDRAFID 130

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

 Score = 37.7 bits (86), Expect = 7e-04
 Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAIN 201
           VLD+ TG G +    +      +   D +ED + 
Sbjct: 19  VLDVATGGGHVANAFAPFVK-KVVAFDLTEDILK 51

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 0.001
 Identities = 8/47 (17%), Positives = 22/47 (46%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS 213
           +++DIG+G  +     +   F D+T  D+++      +    ++  +
Sbjct: 54  TLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGA 100

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 316

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.5 bits (86), Expect = 0.001
 Identities = 13/69 (18%), Positives = 27/69 (39%)

Query: 156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCI 215
           +  N        VLD+G+G G+L    +K G   + G++ S  +    + +        +
Sbjct: 25  MFHNRHLFKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKANKLDHVV 84

Query: 216 KFLVDDVLD 224
             +   V +
Sbjct: 85  TIIKGKVEE 93

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

 Score = 36.2 bits (82), Expect = 0.002
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 1/42 (2%)

Query: 167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN 208
            VL    G    +  LS QG+  + G + SE A+    +   
Sbjct: 23  RVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERG 63

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

 Score = 35.7 bits (81), Expect = 0.003
 Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSED 198
           VLDIG G G      S     +  GVD +++
Sbjct: 20  VLDIGAGAGHTALAFSPYV-QECIGVDATKE 49

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 0.003
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 168 VLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG 211
           ++DIG+G  +     +   F D+T  D+ E            + 
Sbjct: 58  LIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEP 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	253
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.72
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.71
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.67
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.66
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.66
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.65
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.63
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.63
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.62
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.62
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.61
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.6
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.59
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.58
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.58
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.54
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.52
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.52
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.49
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.45
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.45
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.44
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.43
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.43
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.42
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.38
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.36
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.35
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.33
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.33
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.32
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.31
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.3
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.3
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	99.29
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.29
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.28
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	99.26
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.25
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	99.24
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.24
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	99.23
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.19
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.19
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.18
d2h00a1	250	Methyltransferase 10 domain containing protein MET	99.18
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.17
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.16
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.14
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.14
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.14
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	99.14
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	99.13
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	99.12
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.12
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	99.11
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.08
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.06
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.06
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.06
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.04
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.0
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.95
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.94
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.93
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	98.89
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.75
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.75
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.74
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.72
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.67
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.6
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.59
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	98.53
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	98.47
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	98.35
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.33
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.33
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.22
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	98.15
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	98.09
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	98.07
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	98.06
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	98.03
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.0
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	97.92
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.91
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.88
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	97.87
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.81
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.8
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.76
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.75
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.72
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.64
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.63
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.57
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.55
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.24
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	97.05
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	97.01
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	96.98
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	96.68
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	96.5
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	96.4
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	96.29
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	95.84
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	95.28
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.2
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	95.05
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	94.38
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	94.36
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	94.32
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	94.03
d1xg5a_	257	Putative dehydrogenase ARPG836 (MGC4172) {Human (H	93.82
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	93.7
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	93.69
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	93.55
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	93.17
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	93.02
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	92.85
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	92.7
d1xkqa_	272	Hypothetical protein R05D8.7 {Caenorhabditis elega	92.58
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	92.57
d1yb1a_	244	17-beta-hydroxysteroid dehydrogenase type XI {Huma	92.55
d1xhla_	274	Hypothetical protein F25D1.5 {Caenorhabditis elega	92.11
d2ae2a_	259	Tropinone reductase {Jimsonweed (Datura stramonium	92.03
d1xq1a_	259	Tropinone reductase {Thale cress (Arabidopsis thal	91.87
d2c07a1	251	beta-keto acyl carrier protein reductase {Malaria	91.83
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	91.77
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	91.76
d1spxa_	264	Glucose dehydrogenase (5l265) {Nematode (Caenorhab	91.71
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	91.67
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	91.62
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	91.43
d1fmca_	255	7-alpha-hydroxysteroid dehydrogenase {Escherichia	91.42
d2bgka1	268	Rhizome secoisolariciresinol dehydrogenase {Mayapp	91.26
d1iy8a_	258	Levodione reductase {Corynebacterium aquaticum [Ta	90.86
d2rhca1	257	beta-keto acyl carrier protein reductase {Streptom	90.69
d1ja9a_	259	1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl	90.35
d1vl8a_	251	Gluconate 5-dehydrogenase {Thermotoga maritima [Ta	90.02
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	89.9
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	89.7
d1pjca1	168	L-alanine dehydrogenase {Phormidium lapideum [TaxI	89.61
d1gega_	255	meso-2,3-butanediol dehydrogenase {Klebsiella pneu	89.61
d2hmva1	134	Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}	89.57
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	89.51
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	89.23
d1xu9a_	269	11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom	89.08
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	88.65
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	88.58
d1zk4a1	251	R-specific alcohol dehydrogenase {Lactobacillus br	88.38
d2gdza1	254	15-hydroxyprostaglandin dehydrogenase, PGDH {Human	88.26
d1cyda_	242	Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1	88.09
d1nffa_	244	Putative oxidoreductase Rv2002 {Mycobacterium tube	87.5
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	87.37
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	87.23
d1x1ta1	260	D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas	86.63
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	86.46
d1yxma1	297	Peroxisomal trans 2-enoyl CoA reductase {Human (Ho	86.36
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	85.96
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	85.87
d1ydea1	250	Retinal dehydrogenase/reductase 3 {Human (Homo sap	85.65
d1p3da1	96	UDP-N-acetylmuramate-alanine ligase MurC {Haemophi	85.64
d1geea_	261	Glucose dehydrogenase {Bacillus megaterium [TaxId:	85.12
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	84.63
d1hdca_	254	3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre	84.59
d1ulsa_	242	beta-keto acyl carrier protein reductase {Thermus	84.58
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	84.27
d1m6ex_	359	Salicylic acid carboxyl methyltransferase (SAMT) {	84.24
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	83.49
d1k2wa_	256	Sorbitol dehydrogenase {Rhodobacter sphaeroides [T	83.02
d1bdba_	276	Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps	82.46
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	81.78
d2fy8a1	129	Potassium channel-related protein MthK {Archaeon M	81.76
d2d1ya1	248	Hypothetical protein TTHA0369 {Thermus thermophilu	81.37
d1ulua_	256	Enoyl-ACP reductase {Thermus thermophilus [TaxId:	81.33
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	81.23
d1wmaa1	275	Carbonyl reductase/20beta-hydroxysteroid dehydroge	80.86
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	80.83
d1p77a1	171	Shikimate 5-dehydrogenase AroE {Haemophilus influe	80.74
d1hxha_	253	3beta/17beta hydroxysteroid dehydrogenase {Comamon	80.58
d2ew8a1	247	(s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb	80.39

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.72  E-value=1.3e-17  Score=140.25  Aligned_cols=82  Identities=21%  Similarity=0.328  Sum_probs=76.7

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGT  239 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~  239 (253)
                      ..+++.+|||||||||.++..+++++. +|+|+|+|+.|++.|++++...++.++.++++|+.+++++ ++||+|++..+
T Consensus        13 ~~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~   91 (234)
T d1xxla_          13 ECRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFPDDSFDIITCRYA   91 (234)
T ss_dssp             TCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhcccccccccccccccccccccccccceeeeece
Confidence            447889999999999999999999965 9999999999999999999999988999999999999876 89999999999


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      +||+
T Consensus        92 l~~~   95 (234)
T d1xxla_          92 AHHF   95 (234)
T ss_dssp             GGGC
T ss_pred             eecc
Confidence            9997

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.71  E-value=2e-17  Score=137.94  Aligned_cols=81  Identities=17%  Similarity=0.324  Sum_probs=75.1

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      +.++.+|||||||+|.++..++++|. +|+|+|+|+.|++.|+++++..+..+++|+++|+.+++++ ++||+|++..++
T Consensus        13 l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~~l   91 (231)
T d1vl5a_          13 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFTDERFHIVTCRIAA   91 (231)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSCTTCEEEEEEESCG
T ss_pred             CCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhcccccccccccccccccccccccccccccccccccc
Confidence            36788999999999999999999975 9999999999999999999999988999999999999876 899999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      ||+
T Consensus        92 ~~~   94 (231)
T d1vl5a_          92 HHF   94 (231)
T ss_dssp             GGC
T ss_pred             ccc
Confidence            998

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.67  E-value=1.9e-16  Score=129.82  Aligned_cols=79  Identities=16%  Similarity=0.319  Sum_probs=74.8

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccccee
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDAI  243 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~i  243 (253)
                      ++++|||||||+|..+..|+++|+ +|+|+|+|+.|++.++++++..+++++++...|+.++.++++||+|++..++||+
T Consensus        30 ~~grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~fD~I~~~~~~~~~  108 (198)
T d2i6ga1          30 APGRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL  108 (198)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCCCCCCEEEEEEESCGGGS
T ss_pred             CCCcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhhhccccchhhhheecccccccccccEEEEeeeeecC
Confidence            456999999999999999999987 8999999999999999999999998999999999999888999999999999997

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.66  E-value=5.9e-17  Score=138.86  Aligned_cols=135  Identities=21%  Similarity=0.245  Sum_probs=101.2

Q ss_pred             hhhHhHHHHHHHhccccCCCcceeecCcchhHHHHHh----hhhcceeecCCCcCCccccc-cchHHHHhccC-CCCCEE
Q 025428           95 QSYWDSAYADELANFREHGHAGEVWFGADVMDVVASW----TKSLCISISQGHMLNHVEDL-KSEPVEENDKY-LSSWSV  168 (253)
Q Consensus        95 ~~~Wd~~y~~~~~~~~~~~~~~e~wf~~~~~~~~~~w----~~~~~~~i~~~~~~~~~~~~-~~~l~~~l~~~-~~~~~V  168 (253)
                      .+.|...|++.+.++.-    +..|.-       ..|    .......|.+++.++++.+. ++.+++.+.+. +++.+|
T Consensus        56 ~~dW~~~w~~~~~p~~~----~~~~v~-------~~~~~~~~~~~~i~i~pg~aFGTG~H~TT~l~l~~l~~~~~~g~~V  124 (254)
T d2nxca1          56 DEDWLEAWRRDLKPALA----PPFVVL-------APWHTWEGAEIPLVIEPGMAFGTGHHETTRLALKALARHLRPGDKV  124 (254)
T ss_dssp             HHHHHHHHHHHCCCEEE----TTEEEE-------CTTCCCCSSSEEEECCCC-----CCSHHHHHHHHHHHHHCCTTCEE
T ss_pred             cchHHHHHHhhCCCEEE----CCEEEE-------eccccCCCcceEEEEccccccCccccchhhHHHHHHHhhcCccCEE
Confidence            56888888887766542    222211       112    13456778899999988755 77778887765 688899


Q ss_pred             EEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          169 LDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       169 LDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      ||+|||+|.+++.+++.|. +|+|+|+|+.|++.|++|++.+++ +++++++|+.+....++||+|+++...+.
T Consensus       125 LDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~-~~~~~~~d~~~~~~~~~fD~V~ani~~~~  196 (254)
T d2nxca1         125 LDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGV-RPRFLEGSLEAALPFGPFDLLVANLYAEL  196 (254)
T ss_dssp             EEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTC-CCEEEESCHHHHGGGCCEEEEEEECCHHH
T ss_pred             EEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCC-ceeEEeccccccccccccchhhhcccccc
Confidence            9999999999999999886 899999999999999999999998 67899999876544589999999866553

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.66  E-value=2.5e-16  Score=130.08  Aligned_cols=79  Identities=29%  Similarity=0.402  Sum_probs=72.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      +++.+|||||||+|.++..+++.|. +|+|+|+|++|++.|++++...+. ++.++++|+.+++++ ++||+|++..+++
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  113 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFEDKTFDYVIFIDSIV  113 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSCTTCEEEEEEESCGG
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhccccc-cccccccccccccccCcCceEEEEecchh
Confidence            4668999999999999999999976 899999999999999999887774 688999999999876 8999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       114 ~~  115 (226)
T d1ve3a1         114 HF  115 (226)
T ss_dssp             GC
T ss_pred             hC
Confidence            97

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.65  E-value=4.4e-16  Score=131.21  Aligned_cols=79  Identities=28%  Similarity=0.488  Sum_probs=71.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEc-cccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK-GTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~-~~l~  241 (253)
                      .+..+|||||||||.++..|+++|+ +|+|||+|+.||+.|+++++..++ +++++++|+.+++++++||+|++. .+++
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~~~~fD~I~~~~~~~~  117 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAFKNEFDAVTMFFSTIM  117 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCCCSCEEEEEECSSGGG
T ss_pred             CCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccc-cchheehhhhhcccccccchHhhhhhhhh
Confidence            3567999999999999999999987 899999999999999999988876 899999999999988999999996 5667


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       118 ~~  119 (251)
T d1wzna1         118 YF  119 (251)
T ss_dssp             GS
T ss_pred             cC
Confidence            65

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.8e-16  Score=132.28  Aligned_cols=81  Identities=19%  Similarity=0.275  Sum_probs=73.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..++..++.+|+|+|+|++||+.|++++...+..+++|+++|+.+++++ ++||+|++..++|
T Consensus        59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~~l~  138 (222)
T d2ex4a1          59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTPEPDSYDVIWIQWVIG  138 (222)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccccccccccccccccccc
Confidence            456799999999999999988776679999999999999999999888877899999999998875 8999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       139 h~  140 (222)
T d2ex4a1         139 HL  140 (222)
T ss_dssp             GS
T ss_pred             cc
Confidence            97

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.63  E-value=4.1e-16  Score=131.68  Aligned_cols=79  Identities=22%  Similarity=0.299  Sum_probs=71.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEc-cccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDK-GTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~-~~l~  241 (253)
                      .++.+|||+|||+|.++..|+++|. +|+|+|+|+.||+.|++++...++ +++++++|+.+++++++||+|+|. .+++
T Consensus        36 ~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~~~~fD~i~~~~~~~~  113 (246)
T d1y8ca_          36 LVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNINRKFDLITCCLDSTN  113 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCCSCCEEEEEECTTGGG
T ss_pred             CCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCc-cceeeccchhhhcccccccccceeeeeee
Confidence            3567999999999999999999977 999999999999999999988886 899999999999888999999985 5676


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       114 ~~  115 (246)
T d1y8ca_         114 YI  115 (246)
T ss_dssp             GC
T ss_pred             cc
Confidence            65

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.4e-16  Score=131.35  Aligned_cols=80  Identities=23%  Similarity=0.249  Sum_probs=70.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC-----------------CCceEEEEeccCCC
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-----------------FSCIKFLVDDVLDT  225 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g-----------------~~~i~~~~~D~~~~  225 (253)
                      .++.+|||+|||+|..+..|+++|+ +|||||+|+.||+.|+++....+                 -.+++++++|+.++
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l  122 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDL  122 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhhc
Confidence            5778999999999999999999998 99999999999999998864321                 12689999999988


Q ss_pred             cC--CCCccEEEEcccccee
Q 025428          226 KL--ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       226 ~~--~~~fD~Vi~~~~l~~i  243 (253)
                      +.  .+.||+|+...++|++
T Consensus       123 ~~~~~~~fd~i~~~~~l~~~  142 (229)
T d2bzga1         123 PRTNIGKFDMIWDRGALVAI  142 (229)
T ss_dssp             GGSCCCCEEEEEESSSTTTS
T ss_pred             cccccCceeEEEEEEEEEec
Confidence            64  3899999999999998

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.2e-15  Score=128.99  Aligned_cols=84  Identities=21%  Similarity=0.251  Sum_probs=75.2

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      .+.++.+|||||||+|.++..+++....+|+|+|+|+.|++.|++++...|+. +++|+++|+.++..+++||+|++.++
T Consensus        30 ~l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~~~~~fD~v~~~~~  109 (245)
T d1nkva_          30 RMKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVANEKCDVAACVGA  109 (245)
T ss_dssp             CCCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCCSSCEEEEEEESC
T ss_pred             CCCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhccccCceeEEEEEeh
Confidence            44688999999999999999998873249999999999999999999999986 49999999999866699999999999


Q ss_pred             cceec
Q 025428          240 LDAIG  244 (253)
Q Consensus       240 l~~i~  244 (253)
                      ++|+.
T Consensus       110 ~~~~~  114 (245)
T d1nkva_         110 TWIAG  114 (245)
T ss_dssp             GGGTS
T ss_pred             hhccC
Confidence            99984

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.61  E-value=1.3e-15  Score=131.33  Aligned_cols=81  Identities=15%  Similarity=0.236  Sum_probs=75.0

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKG  238 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~  238 (253)
                      +.++.+|||||||+|.++..|+++ |. +|+|+|+|+.|++.|+++....|+. +++++++|+.+++++ ++||+|++..
T Consensus        65 l~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~~~sfD~V~~~~  143 (282)
T d2o57a1          65 LQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCEDNSYDFIWSQD  143 (282)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSCTTCEEEEEEES
T ss_pred             CCCCCEEEEeCCCCcHHHhhhhccCCc-EEEEEeccchhhhhhhcccccccccccccccccccccccccccccchhhccc
Confidence            367889999999999999999987 55 8999999999999999999998886 699999999999876 8999999999


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      +++|+
T Consensus       144 ~l~h~  148 (282)
T d2o57a1         144 AFLHS  148 (282)
T ss_dssp             CGGGC
T ss_pred             hhhhc
Confidence            99998

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.60  E-value=4.9e-16  Score=125.36  Aligned_cols=81  Identities=19%  Similarity=0.201  Sum_probs=70.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC------------CceEEEEeccCCCcCC--
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF------------SCIKFLVDDVLDTKLE--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~------------~~i~~~~~D~~~~~~~--  228 (253)
                      .++.+|||+|||+|..+..|+++|+ +|+|+|+|+.||+.|+++++..+.            .++.++++|+.+++..  
T Consensus        19 ~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~   97 (201)
T d1pjza_          19 VPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   97 (201)
T ss_dssp             CTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccccc
Confidence            5788999999999999999999998 999999999999999999864322            2568999999998653  


Q ss_pred             CCccEEEEccccceec
Q 025428          229 RQFQLVMDKGTLDAIG  244 (253)
Q Consensus       229 ~~fD~Vi~~~~l~~i~  244 (253)
                      ..||+|++..+++++.
T Consensus        98 ~~~D~i~~~~~l~~l~  113 (201)
T d1pjza_          98 GHCAAFYDRAAMIALP  113 (201)
T ss_dssp             HSEEEEEEESCGGGSC
T ss_pred             cceeEEEEEeeeEecc
Confidence            7899999999999873

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.59  E-value=2.9e-15  Score=127.23  Aligned_cols=83  Identities=24%  Similarity=0.278  Sum_probs=73.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC--CCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL--ERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~--~~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||+|..+..+++.|..+|+|+|+|+.||+.|++++...+.. ++.++++|+...++  .++||+|++.++
T Consensus        23 ~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~~~~  102 (252)
T d1ri5a_          23 KRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVISSQFS  102 (252)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEEEEEESC
T ss_pred             CCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceEEEEcce
Confidence            467899999999999999999988878999999999999999998876654 69999999977654  478999999999


Q ss_pred             cceecc
Q 025428          240 LDAIGL  245 (253)
Q Consensus       240 l~~i~~  245 (253)
                      +||+..
T Consensus       103 l~~~~~  108 (252)
T d1ri5a_         103 FHYAFS  108 (252)
T ss_dssp             GGGGGS
T ss_pred             eeecCC
Confidence            999853

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.58  E-value=2.8e-15  Score=121.99  Aligned_cols=91  Identities=14%  Similarity=0.208  Sum_probs=78.0

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE  228 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~  228 (253)
                      ++...++..+ .+.++.+|||+|||+|.++..+++.+ .+|+|+|++++|++.|++|++++|+. +++++++|+.+...+
T Consensus        20 eir~~il~~l-~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~~~   97 (186)
T d1l3ia_          20 EVRCLIMCLA-EPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEALCK   97 (186)
T ss_dssp             HHHHHHHHHH-CCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHHTT
T ss_pred             HHHHHHHHhc-CCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcccc
Confidence            4455555544 55789999999999999999999884 59999999999999999999999985 899999999887665


Q ss_pred             -CCccEEEEccccce
Q 025428          229 -RQFQLVMDKGTLDA  242 (253)
Q Consensus       229 -~~fD~Vi~~~~l~~  242 (253)
                       ..||+|++.+..++
T Consensus        98 ~~~~D~v~~~~~~~~  112 (186)
T d1l3ia_          98 IPDIDIAVVGGSGGE  112 (186)
T ss_dssp             SCCEEEEEESCCTTC
T ss_pred             cCCcCEEEEeCcccc
Confidence             89999999876654

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.58  E-value=2.5e-15  Score=125.55  Aligned_cols=82  Identities=23%  Similarity=0.333  Sum_probs=71.6

Q ss_pred             HHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEE
Q 025428          157 EENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMD  236 (253)
Q Consensus       157 ~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~  236 (253)
                      +.+....++.+|||||||+|.++..+++.|. +|+|+|+|++|++.|+++..    .+++++++|+.+++++++||+|++
T Consensus        13 ~~~~~~~~~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~~~~~fD~I~~   87 (225)
T d2p7ia1          13 RAFTPFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQLPRRYDNIVL   87 (225)
T ss_dssp             HHHGGGCCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCCCSSCEEEEEE
T ss_pred             HHhhhhCCCCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhcccc----cccccccccccccccccccccccc
Confidence            3333445677999999999999999999876 89999999999999998743    369999999999888899999999


Q ss_pred             cccccee
Q 025428          237 KGTLDAI  243 (253)
Q Consensus       237 ~~~l~~i  243 (253)
                      .++|||+
T Consensus        88 ~~vleh~   94 (225)
T d2p7ia1          88 THVLEHI   94 (225)
T ss_dssp             ESCGGGC
T ss_pred             cceeEec
Confidence            9999998

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.54  E-value=9.5e-15  Score=126.26  Aligned_cols=82  Identities=23%  Similarity=0.270  Sum_probs=73.4

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      +..++.+|||||||+|.++..+++. + ..+|+|+|+|+.|++.|+++....++ +++|+++|+.+++++++||+|++..
T Consensus        24 ~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~~~~~fD~v~~~~  102 (281)
T d2gh1a1          24 KITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIELNDKYDIAICHA  102 (281)
T ss_dssp             CCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCCCSSCEEEEEEES
T ss_pred             ccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-cccccccccccccccCCceEEEEeh
Confidence            4456789999999999999999986 2 23899999999999999999988776 8999999999998888999999999


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      ++||+
T Consensus       103 ~l~~~  107 (281)
T d2gh1a1         103 FLLHM  107 (281)
T ss_dssp             CGGGC
T ss_pred             hhhcC
Confidence            99997

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=2.3e-14  Score=119.54  Aligned_cols=74  Identities=23%  Similarity=0.348  Sum_probs=63.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEc-ccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDK-GTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~-~~l  240 (253)
                      .++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++.    .  ..++++|+.+++++ ++||+|++. .++
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~----~--~~~~~~~~~~l~~~~~~fD~ii~~~~~~  113 (246)
T d2avna1          41 KNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKG----V--KNVVEAKAEDLPFPSGAFEAVLALGDVL  113 (246)
T ss_dssp             CSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHT----C--SCEEECCTTSCCSCTTCEEEEEECSSHH
T ss_pred             CCCCEEEEECCCCchhcccccccce-EEEEeeccccccccccccc----c--cccccccccccccccccccceeeecchh
Confidence            3567999999999999999999976 8999999999999999863    2  23678999999886 899999985 578


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      ||+
T Consensus       114 ~~~  116 (246)
T d2avna1         114 SYV  116 (246)
T ss_dssp             HHC
T ss_pred             hhh
Confidence            886

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.52  E-value=3.6e-14  Score=115.95  Aligned_cols=89  Identities=20%  Similarity=0.278  Sum_probs=75.4

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCcCCC
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKLER  229 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~~~~  229 (253)
                      ++.|++.+.. .++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.|+++++.+++.  +++++.+|+.+...++
T Consensus        41 t~lLi~~l~~-~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~~~~~  118 (194)
T d1dusa_          41 TKILVENVVV-DKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENVKDR  118 (194)
T ss_dssp             HHHHHHHCCC-CTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTCTTS
T ss_pred             HHHHHHhCCc-CCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhhhccC
Confidence            4445555443 578899999999999999999885 49999999999999999999998886  4899999998854458


Q ss_pred             CccEEEEccccce
Q 025428          230 QFQLVMDKGTLDA  242 (253)
Q Consensus       230 ~fD~Vi~~~~l~~  242 (253)
                      +||+|+++.++|+
T Consensus       119 ~fD~Ii~~~p~~~  131 (194)
T d1dusa_         119 KYNKIITNPPIRA  131 (194)
T ss_dssp             CEEEEEECCCSTT
T ss_pred             CceEEEEcccEEe
Confidence            9999999988775

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.49  E-value=2.3e-14  Score=122.24  Aligned_cols=79  Identities=15%  Similarity=0.196  Sum_probs=69.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .+..+|||+|||+|+++..|+..++.+|+++|+|+.||+.|++++..  ..+++++++|+.+++++ ++||+|++..+||
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~--~~~~~~~~~d~~~~~~~~~~fD~I~~~~vl~  169 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG--MPVGKFILASMETATLPPNTYDLIVIQWTAI  169 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT--SSEEEEEESCGGGCCCCSSCEEEEEEESCGG
T ss_pred             CCCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc--cccceeEEccccccccCCCccceEEeecccc
Confidence            45679999999999999998877666899999999999999988653  34689999999999875 8999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       170 hl  171 (254)
T d1xtpa_         170 YL  171 (254)
T ss_dssp             GS
T ss_pred             cc
Confidence            98

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.45  E-value=1.6e-13  Score=118.36  Aligned_cols=104  Identities=24%  Similarity=0.330  Sum_probs=81.5

Q ss_pred             hcceeecCCC-cCCccccccchHHHHh-ccC-CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHh
Q 025428          134 SLCISISQGH-MLNHVEDLKSEPVEEN-DKY-LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANR  209 (253)
Q Consensus       134 ~~~~~i~~~~-~~~~~~~~~~~l~~~l-~~~-~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~  209 (253)
                      .+.+.+.++. +|...++.   +++.. ... ..+.+|||+|||+|.++..++.. ...+|+++|+|+.+++.|++|++.
T Consensus        78 ~~~~~v~~~VlIPRpeTE~---lv~~~l~~~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~  154 (274)
T d2b3ta1          78 SLPLFVSPATLIPRPDTEC---LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH  154 (274)
T ss_dssp             TEEEECCTTSCCCCTTHHH---HHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH
T ss_pred             eeEEEEeccccccccchhh---hhhhHhhhhcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHH
Confidence            3456677776 66654443   33222 222 35578999999999999999887 445999999999999999999999


Q ss_pred             cCCCceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          210 DGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       210 ~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      +++.+++++++|+.+....++||+|++|...
T Consensus       155 ~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPY  185 (274)
T d2b3ta1         155 LAIKNIHILQSDWFSALAGQQFAMIVSNPPY  185 (274)
T ss_dssp             HTCCSEEEECCSTTGGGTTCCEEEEEECCCC
T ss_pred             hCcccceeeecccccccCCCceeEEEecchh
Confidence            9998899999999886555799999998754

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.45  E-value=9.5e-14  Score=115.52  Aligned_cols=80  Identities=15%  Similarity=0.223  Sum_probs=68.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~---g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      +++.+|||+|||||.++..+++.   +..+|+|+|+|+.||+.|+++++..+.. ++.+.++|+.++++ ..+|+|++..
T Consensus        38 ~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~~-~~~d~i~~~~  116 (225)
T d1im8a_          38 TADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI-KNASMVILNF  116 (225)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCCC-CSEEEEEEES
T ss_pred             CCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhcccc-ccceeeEEee
Confidence            57789999999999999999975   2339999999999999999998876654 58889999887754 5789999999


Q ss_pred             cccee
Q 025428          239 TLDAI  243 (253)
Q Consensus       239 ~l~~i  243 (253)
                      ++|++
T Consensus       117 ~l~~~  121 (225)
T d1im8a_         117 TLQFL  121 (225)
T ss_dssp             CGGGS
T ss_pred             ecccc
Confidence            99997

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.44  E-value=3.1e-13  Score=112.29  Aligned_cols=89  Identities=21%  Similarity=0.264  Sum_probs=76.4

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CC
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQ  230 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~  230 (253)
                      .+++.+ ...++.+|||||||+|.++..+++. | ..+|+++|+++++++.|+++++..++.|+.++++|..+..+. ++
T Consensus        66 ~~l~~l-~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~~~~~  144 (213)
T d1dl5a1          66 LFMEWV-GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVPEFSP  144 (213)
T ss_dssp             HHHHHT-TCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGCC
T ss_pred             HHHHhh-hccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccccccc
Confidence            344444 3478999999999999999999986 3 238999999999999999999999999999999999886554 78


Q ss_pred             ccEEEEcccccee
Q 025428          231 FQLVMDKGTLDAI  243 (253)
Q Consensus       231 fD~Vi~~~~l~~i  243 (253)
                      ||+|++.++++++
T Consensus       145 fD~I~~~~~~~~~  157 (213)
T d1dl5a1         145 YDVIFVTVGVDEV  157 (213)
T ss_dssp             EEEEEECSBBSCC
T ss_pred             hhhhhhhccHHHh
Confidence            9999999998876

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.43  E-value=8.3e-14  Score=114.09  Aligned_cols=69  Identities=22%  Similarity=0.257  Sum_probs=61.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .+..+|||||||+|.++..+.     +++|+|+|+.|++.|+++       ++.++++|+.+++++ ++||+|++..+||
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-----~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~~~~~fD~I~~~~~l~  102 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-----IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPLKDESFDFALMVTTIC  102 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-----CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCSCTTCEEEEEEESCGG
T ss_pred             CCCCeEEEECCCCcccccccc-----eEEEEeCChhhccccccc-------ccccccccccccccccccccccccccccc
Confidence            456689999999999988773     468999999999999874       689999999999876 8999999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      |+
T Consensus       103 h~  104 (208)
T d1vlma_         103 FV  104 (208)
T ss_dssp             GS
T ss_pred             cc
Confidence            98

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.43  E-value=3.6e-13  Score=111.03  Aligned_cols=78  Identities=17%  Similarity=0.235  Sum_probs=69.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      ..+.+|||+|||||.++..++..|+.+|+|+|+++.+++.+++|++.++. +.+++++|+..+  +++||+|+++..+..
T Consensus        45 l~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~-~~~~~~~d~~~~--~~~fD~Vi~nPP~~~  121 (201)
T d1wy7a1          45 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEF--NSRVDIVIMNPPFGS  121 (201)
T ss_dssp             STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGC--CCCCSEEEECCCCSS
T ss_pred             CCCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCC-CceEEECchhhh--CCcCcEEEEcCcccc
Confidence            57889999999999999999999887999999999999999999988886 789999998764  578999999988754


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      .
T Consensus       122 ~  122 (201)
T d1wy7a1         122 Q  122 (201)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.42  E-value=1.8e-13  Score=107.82  Aligned_cols=86  Identities=21%  Similarity=0.169  Sum_probs=74.0

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCc--CCCC
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK--LERQ  230 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~--~~~~  230 (253)
                      ++...+.....+.+|||+|||||.+++.++.+|+++|+++|.++.+++.++++++.+++.+ ++++++|+....  ..++
T Consensus         4 ~~fn~l~~~~~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~   83 (152)
T d2esra1           4 AIFNMIGPYFNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGR   83 (152)
T ss_dssp             HHHHHHCSCCCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSC
T ss_pred             HHHHHHHhhCCCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccc
Confidence            4455555556789999999999999999999999999999999999999999999998875 999999997753  2488


Q ss_pred             ccEEEEccc
Q 025428          231 FQLVMDKGT  239 (253)
Q Consensus       231 fD~Vi~~~~  239 (253)
                      ||+|+++..
T Consensus        84 fDiIf~DPP   92 (152)
T d2esra1          84 FDLVFLDPP   92 (152)
T ss_dssp             EEEEEECCS
T ss_pred             cceeEechh
Confidence            999998754

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.38  E-value=4.5e-13  Score=110.10  Aligned_cols=73  Identities=27%  Similarity=0.408  Sum_probs=63.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      ..+++|||+|||||.+++.++..|+++|+|+|+++.+++.|++|+     .+++++++|+.++  +++||+|++|..+..
T Consensus        47 l~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l--~~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_          47 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEI--SGKYDTWIMNPPFGS  119 (197)
T ss_dssp             SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGC--CCCEEEEEECCCC--
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc-----ccccEEEEehhhc--CCcceEEEeCcccch
Confidence            578999999999999999999998889999999999999999875     3689999999875  578999999877643

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.36  E-value=1.3e-12  Score=112.86  Aligned_cols=80  Identities=14%  Similarity=0.247  Sum_probs=71.1

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      +.++.+|||||||+|.++..++++ |. +|+|+|+|+++++.|+++++..|+. ++.+...|..++  +++||.|++..+
T Consensus        50 l~~g~~VLDiGCG~G~~a~~~a~~~g~-~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~--~~~fD~i~si~~  126 (280)
T d2fk8a1          50 LKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF--AEPVDRIVSIEA  126 (280)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC--CCCCSEEEEESC
T ss_pred             CCCCCEEEEecCCchHHHHHHHHhCce-eEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh--ccchhhhhHhhH
Confidence            368899999999999999999987 66 9999999999999999999999886 478888887764  578999999999


Q ss_pred             cceec
Q 025428          240 LDAIG  244 (253)
Q Consensus       240 l~~i~  244 (253)
                      ++|++
T Consensus       127 ~eh~~  131 (280)
T d2fk8a1         127 FEHFG  131 (280)
T ss_dssp             GGGTC
T ss_pred             HHHhh
Confidence            99984

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=9.4e-13  Score=112.78  Aligned_cols=76  Identities=20%  Similarity=0.173  Sum_probs=66.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..+++.+. .+++|+|+|+.|++.|+++.     .++.++++|+.+++++ ++||+|++..++
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~-----~~~~~~~~d~~~l~~~~~sfD~v~~~~~~  157 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPFSDTSMDAIIRIYAP  157 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSBCTTCEEEEEEESCC
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-----ccccceeeehhhccCCCCCEEEEeecCCH
Confidence            3677999999999999999999843 38999999999999998763     4789999999999986 899999998887


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +++
T Consensus       158 ~~~  160 (268)
T d1p91a_         158 CKA  160 (268)
T ss_dssp             CCH
T ss_pred             HHH
Confidence            764

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3e-12  Score=107.09  Aligned_cols=93  Identities=15%  Similarity=0.243  Sum_probs=76.7

Q ss_pred             ccchHHHHhc-cCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCC-----CceEEEEecc
Q 025428          151 LKSEPVEEND-KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGF-----SCIKFLVDDV  222 (253)
Q Consensus       151 ~~~~l~~~l~-~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~-----~~i~~~~~D~  222 (253)
                      +.+.+++.+. ...++.+|||||||+|..+..+++. | ..+|+++|+++++++.|++++++.++     .++.++++|.
T Consensus        62 ~~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~  141 (224)
T d1i1na_          62 MHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDG  141 (224)
T ss_dssp             HHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCG
T ss_pred             HHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeec
Confidence            3445566554 3468899999999999999999986 3 33899999999999999999987654     4689999999


Q ss_pred             CCCcCC-CCccEEEEcccccee
Q 025428          223 LDTKLE-RQFQLVMDKGTLDAI  243 (253)
Q Consensus       223 ~~~~~~-~~fD~Vi~~~~l~~i  243 (253)
                      ....++ ++||+|++.++++++
T Consensus       142 ~~~~~~~~~fD~I~~~~~~~~i  163 (224)
T d1i1na_         142 RMGYAEEAPYDAIHVGAAAPVV  163 (224)
T ss_dssp             GGCCGGGCCEEEEEECSBBSSC
T ss_pred             ccccchhhhhhhhhhhcchhhc
Confidence            887665 899999999988876

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=3.7e-12  Score=110.55  Aligned_cols=80  Identities=13%  Similarity=0.259  Sum_probs=70.8

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEccc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      +.++.+|||||||.|.++..++++ |+ +|+|+++|+++++.++++++..|+.+ +.+...|...  .+++||.|++.++
T Consensus        59 l~~G~~VLDiGCG~G~~~~~~a~~~g~-~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~--~~~~fD~i~sie~  135 (291)
T d1kpia_          59 LEPGMTLLDIGCGWGSTMRHAVAEYDV-NVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEE--FDEPVDRIVSLGA  135 (291)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGG--CCCCCSEEEEESC
T ss_pred             CCCCCEEEEecCcchHHHHHHHHhcCc-ceeeccchHHHHHHHHHHHHhhccchhhhhhhhcccc--cccccceEeechh
Confidence            368899999999999999999876 66 99999999999999999999988874 8888888753  3589999999999


Q ss_pred             cceec
Q 025428          240 LDAIG  244 (253)
Q Consensus       240 l~~i~  244 (253)
                      ++|+.
T Consensus       136 ~eH~~  140 (291)
T d1kpia_         136 FEHFA  140 (291)
T ss_dssp             GGGTT
T ss_pred             HHhcc
Confidence            99984

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.32  E-value=2.3e-12  Score=111.16  Aligned_cols=81  Identities=21%  Similarity=0.218  Sum_probs=65.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC----ceEEEEeccCCC----cCCCCccEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS----CIKFLVDDVLDT----KLERQFQLV  234 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~----~i~~~~~D~~~~----~~~~~fD~V  234 (253)
                      ..+.+|||+|||+|.++..|+++|+ +|+|+|+|++||+.|+++....+..    +..+...++..+    +..++||+|
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v  133 (292)
T d1xvaa_          55 HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  133 (292)
T ss_dssp             TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCCCCCceEE
Confidence            3567999999999999999999987 8999999999999999998776543    345566666443    345789999


Q ss_pred             EEcc-ccceec
Q 025428          235 MDKG-TLDAIG  244 (253)
Q Consensus       235 i~~~-~l~~i~  244 (253)
                      ++.+ +|+|+.
T Consensus       134 ~~~~~~~~~~~  144 (292)
T d1xvaa_         134 ICLGNSFAHLP  144 (292)
T ss_dssp             EECSSCGGGSC
T ss_pred             EEecCchhhcC
Confidence            9864 788874

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=5.4e-12  Score=109.98  Aligned_cols=80  Identities=21%  Similarity=0.316  Sum_probs=67.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++++|||||||+|.++..+++.|+++|+|+|.|+.|+. ++++...++.. ++.++++|+.+++.+ .+||+|++....
T Consensus        34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~~  112 (311)
T d2fyta1          34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHLPVEKVDVIISEWMG  112 (311)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCCSCSCEEEEEECCCB
T ss_pred             CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcCccccceEEEEeeee
Confidence            578899999999999999999999889999999998865 55555555554 699999999999876 899999997666


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +++
T Consensus       113 ~~~  115 (311)
T d2fyta1         113 YFL  115 (311)
T ss_dssp             TTB
T ss_pred             eec
Confidence            654

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=4.2e-12  Score=111.62  Aligned_cols=80  Identities=29%  Similarity=0.439  Sum_probs=71.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++++|||||||+|.++..+++.|+++|+++|.|+ +++.|+++.+.+++. ++.++++|+.+++++ ++||+|++....
T Consensus        37 ~~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~~  115 (328)
T d1g6q1_          37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHLPFPKVDIIISEWMG  115 (328)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccCcccceeEEEEEecc
Confidence            36789999999999999999999988999999997 778999999888876 599999999999876 899999998777


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +++
T Consensus       116 ~~~  118 (328)
T d1g6q1_         116 YFL  118 (328)
T ss_dssp             TTB
T ss_pred             eee
Confidence            665

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.30  E-value=4.8e-12  Score=109.54  Aligned_cols=80  Identities=16%  Similarity=0.306  Sum_probs=71.9

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEccc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      +.++.+|||||||.|.++..+++. |+ +|+||++|++.++.|+++++..|+. ++++..+|..++  +++||.|++.+.
T Consensus        60 l~~G~~VLDiGCG~G~~a~~~a~~~g~-~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~--~~~fD~i~si~~  136 (285)
T d1kpga_          60 LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF--DEPVDRIVSIGA  136 (285)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC--CCCCSEEEEESC
T ss_pred             CCCCCEEEEecCcchHHHHHHHhcCCc-ceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc--cccccceeeehh
Confidence            368899999999999999998887 65 9999999999999999999888775 699999999776  478999999999


Q ss_pred             cceec
Q 025428          240 LDAIG  244 (253)
Q Consensus       240 l~~i~  244 (253)
                      ++|++
T Consensus       137 ~eh~~  141 (285)
T d1kpga_         137 FEHFG  141 (285)
T ss_dssp             GGGTC
T ss_pred             hhhcC
Confidence            99974

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1.7e-12  Score=105.32  Aligned_cols=94  Identities=9%  Similarity=-0.011  Sum_probs=79.4

Q ss_pred             ccccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc
Q 025428          147 HVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK  226 (253)
Q Consensus       147 ~~~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~  226 (253)
                      +.+.+...+...+.....+.+|||++||||.+++.++.+|+.+|++||.++.+++.+++|++..+..+++++++|+.+..
T Consensus        26 t~~~vre~lfn~l~~~~~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l  105 (183)
T d2fpoa1          26 TTDRVRETLFNWLAPVIVDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFL  105 (183)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHH
T ss_pred             CcHHHHHHHHhhhhcccchhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccc
Confidence            33455667777776656788999999999999999999999999999999999999999999888888999999987753


Q ss_pred             --CCCCccEEEEcccc
Q 025428          227 --LERQFQLVMDKGTL  240 (253)
Q Consensus       227 --~~~~fD~Vi~~~~l  240 (253)
                        ...+||+|+++..+
T Consensus       106 ~~~~~~fDlIf~DPPY  121 (183)
T d2fpoa1         106 AQKGTPHNIVFVDPPF  121 (183)
T ss_dssp             SSCCCCEEEEEECCSS
T ss_pred             cccccccCEEEEcCcc
Confidence              23789999987654

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.29  E-value=4.2e-12  Score=108.53  Aligned_cols=77  Identities=12%  Similarity=-0.003  Sum_probs=70.5

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEcc
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKG  238 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~  238 (253)
                      ..++.+|||+|||+|.+++.++++|..+|+++|+|+.+++.+++|++.+++.+ ++++++|+.++...+.||.|+++.
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~~~~~D~Ii~~~  182 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPGENIADRILMGY  182 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCCCSCEEEEEECC
T ss_pred             cCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhccCCCCCEEEECC
Confidence            35789999999999999999999987799999999999999999999999985 999999999987778999998753

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=6e-12  Score=110.10  Aligned_cols=80  Identities=18%  Similarity=0.340  Sum_probs=69.3

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++++|||||||+|.++..+++.|+++|+|+|.|+. ...++++++.+++. +++++++|+.+++++ ++||+|++....
T Consensus        32 ~~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~~~  110 (316)
T d1oria_          32 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVELPVEKVDIIISEWMG  110 (316)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCCSSSCEEEEEECCCB
T ss_pred             CCcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHcccccceeEEEeeeeee
Confidence            367899999999999999999999889999999985 57778888888876 599999999999876 899999997666


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      +++
T Consensus       111 ~~l  113 (316)
T d1oria_         111 YCL  113 (316)
T ss_dssp             BTB
T ss_pred             eee
Confidence            554

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.26  E-value=9.7e-12  Score=103.36  Aligned_cols=90  Identities=14%  Similarity=0.242  Sum_probs=77.1

Q ss_pred             cchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-C
Q 025428          152 KSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-R  229 (253)
Q Consensus       152 ~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~  229 (253)
                      ...+++.+. ..++.+|||||||+|+.+..+++. | .+|+++|+++++++.|+++++..|+.|+.++++|..+...+ +
T Consensus        67 ~a~ml~~L~-l~~g~~VLeIGsGsGY~taila~l~g-~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~~~~~  144 (215)
T d1jg1a_          67 VAIMLEIAN-LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGFPPKA  144 (215)
T ss_dssp             HHHHHHHHT-CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCGGGC
T ss_pred             HHHHHHhhc-cCccceEEEecCCCChhHHHHHHhhC-ceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCCcccC
Confidence            344444443 478899999999999999999987 5 37999999999999999999999999999999999886544 8


Q ss_pred             CccEEEEcccccee
Q 025428          230 QFQLVMDKGTLDAI  243 (253)
Q Consensus       230 ~fD~Vi~~~~l~~i  243 (253)
                      +||.|++.+.+.++
T Consensus       145 pfD~Iiv~~a~~~i  158 (215)
T d1jg1a_         145 PYDVIIVTAGAPKI  158 (215)
T ss_dssp             CEEEEEECSBBSSC
T ss_pred             cceeEEeecccccC
Confidence            99999999888765

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.25  E-value=1.2e-11  Score=103.48  Aligned_cols=85  Identities=22%  Similarity=0.277  Sum_probs=71.2

Q ss_pred             HHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccE
Q 025428          155 PVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQL  233 (253)
Q Consensus       155 l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~  233 (253)
                      +++.+ .+.++.+|||||||+|.++..|++.+ .+|+++|+++++++.|+++...  ..|+.++++|......+ ++||+
T Consensus        62 ml~~L-~l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d~~~g~~~~~pfD~  137 (224)
T d1vbfa_          62 MLDEL-DLHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSY--YNNIKLILGDGTLGYEEEKPYDR  137 (224)
T ss_dssp             HHHHT-TCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTT--CSSEEEEESCGGGCCGGGCCEEE
T ss_pred             HHHHh-hhcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhc--ccccccccCchhhcchhhhhHHH
Confidence            34433 34788999999999999999999995 4999999999999999998764  35899999998775444 78999


Q ss_pred             EEEcccccee
Q 025428          234 VMDKGTLDAI  243 (253)
Q Consensus       234 Vi~~~~l~~i  243 (253)
                      |++.+.++++
T Consensus       138 Iiv~~a~~~i  147 (224)
T d1vbfa_         138 VVVWATAPTL  147 (224)
T ss_dssp             EEESSBBSSC
T ss_pred             HHhhcchhhh
Confidence            9999888776

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=99.24  E-value=1.3e-11  Score=104.36  Aligned_cols=79  Identities=19%  Similarity=0.315  Sum_probs=68.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      ....+|||||||+|.++..++++. ..+++++|+ +++++.+++++...++. +++++.+|+.+. .+.+||+|++..+|
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~-~~~~~D~v~~~~vl  156 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP-LPRKADAIILSFVL  156 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSSCEEEEEEESCG
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh-cccchhheeecccc
Confidence            456799999999999999999883 348999998 56999999999888875 699999999764 44679999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      |++
T Consensus       157 h~~  159 (253)
T d1tw3a2         157 LNW  159 (253)
T ss_dssp             GGS
T ss_pred             ccC
Confidence            986

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.1e-13  Score=113.00  Aligned_cols=83  Identities=16%  Similarity=0.169  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc----------------------------
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC----------------------------  214 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~----------------------------  214 (253)
                      .++.+|||||||+|.++..++..++.+|+|+|+|+.||+.|+++++..+...                            
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  129 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRA  129 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhh
Confidence            4677999999999999988888877789999999999999999987554311                            


Q ss_pred             -e-EEEEeccC----CCcC-CCCccEEEEccccceecc
Q 025428          215 -I-KFLVDDVL----DTKL-ERQFQLVMDKGTLDAIGL  245 (253)
Q Consensus       215 -i-~~~~~D~~----~~~~-~~~fD~Vi~~~~l~~i~~  245 (253)
                       + .....+..    ..++ .++||+|++..+|||+..
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~fD~i~~~~~l~~~~~  167 (257)
T d2a14a1         130 AVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACC  167 (257)
T ss_dssp             HEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCS
T ss_pred             hhhcccccccccccccccccCCcccEEeehhhHHHhcc
Confidence             0 11112211    1223 378999999999999854

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.23  E-value=1.3e-11  Score=99.87  Aligned_cols=97  Identities=15%  Similarity=0.115  Sum_probs=81.9

Q ss_pred             cCCccccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEecc
Q 025428          144 MLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDV  222 (253)
Q Consensus       144 ~~~~~~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~  222 (253)
                      +..+.+.+..++..++.....+.+|||++||||.+++.++.+|+.+|+++|.++.+++.+++|++..+.. +++++++|+
T Consensus        21 ~RPt~~~vrealFn~l~~~~~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~  100 (182)
T d2fhpa1          21 TRPTTDKVKESIFNMIGPYFDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDA  100 (182)
T ss_dssp             SCCCCHHHHHHHHHHHCSCCSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCH
T ss_pred             cCcCcHHHHHHHHHHHHHhcCCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccc
Confidence            3444456677888888877789999999999999999999999999999999999999999999988876 699999998


Q ss_pred             CCCc-----CCCCccEEEEcccc
Q 025428          223 LDTK-----LERQFQLVMDKGTL  240 (253)
Q Consensus       223 ~~~~-----~~~~fD~Vi~~~~l  240 (253)
                      ....     ...+||+|+++..+
T Consensus       101 ~~~l~~~~~~~~~fDlIflDPPY  123 (182)
T d2fhpa1         101 NRALEQFYEEKLQFDLVLLDPPY  123 (182)
T ss_dssp             HHHHHHHHHTTCCEEEEEECCCG
T ss_pred             hhhhhhhcccCCCcceEEechhh
Confidence            7642     13689999987654

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.19  E-value=3.5e-11  Score=102.12  Aligned_cols=77  Identities=17%  Similarity=0.229  Sum_probs=67.3

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhc-CCCceEEEEeccCCCcCCCCccEEEEc
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRD-GFSCIKFLVDDVLDTKLERQFQLVMDK  237 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~-g~~~i~~~~~D~~~~~~~~~fD~Vi~~  237 (253)
                      ...++.+|||+|||+|.++..|++. + ..+|+++|+++++++.|+++++.. +..|+++.++|+.+...+++||.|+++
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~~~~~~fD~V~ld  161 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADFISDQMYDAVIAD  161 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTCCCSCCEEEEEEC
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecccccceeeeeeec
Confidence            4478899999999999999999986 3 348999999999999999999875 456899999999988666899999975

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.19  E-value=2.6e-11  Score=99.87  Aligned_cols=79  Identities=16%  Similarity=0.142  Sum_probs=68.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--C-CCCccEEEEccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--L-ERQFQLVMDKGT  239 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~-~~~fD~Vi~~~~  239 (253)
                      ....|||||||+|.++..+|+. ....++|+|+++.++..|.++++..+++|+.++++|+..+.  + ++++|.|+++..
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp  108 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS  108 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred             CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence            3458999999999999999998 33489999999999999999999999999999999998764  3 488999987665


Q ss_pred             cce
Q 025428          240 LDA  242 (253)
Q Consensus       240 l~~  242 (253)
                      ..+
T Consensus       109 ~P~  111 (204)
T d2fcaa1         109 DPW  111 (204)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            443

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.3e-11  Score=103.03  Aligned_cols=75  Identities=13%  Similarity=0.136  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC-CCccEEEEcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE-RQFQLVMDKG  238 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~-~~fD~Vi~~~  238 (253)
                      .++.+|||||||+|..+..+++++..+|+|||+|+.|++.|+++....+. ++.++.+++....  ++ ++||.|+...
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~fD~i~fD~  129 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTLPDGHFDGILYDT  129 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGSCTTCEEEEEECC
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhccc-ccccccccccccccccccccccceeecc
Confidence            46789999999999999999998656899999999999999999877654 6788888766542  33 7899998543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.1e-10  Score=98.89  Aligned_cols=79  Identities=18%  Similarity=0.152  Sum_probs=65.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcC-------CCCccEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKL-------ERQFQLV  234 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~-------~~~fD~V  234 (253)
                      +..++||+|||+|.++..++.+ ...+++|+|+|+++++.|++|++.+++.+ +.+++.+.....+       .++||+|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i  140 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC  140 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence            4469999999999999999987 23399999999999999999999999874 8888876654321       2579999


Q ss_pred             EEccccce
Q 025428          235 MDKGTLDA  242 (253)
Q Consensus       235 i~~~~l~~  242 (253)
                      +||..++.
T Consensus       141 vsNPPY~~  148 (250)
T d2h00a1         141 MCNPPFFA  148 (250)
T ss_dssp             EECCCCC-
T ss_pred             EecCcccc
Confidence            99998875

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.17  E-value=2.5e-11  Score=106.42  Aligned_cols=81  Identities=21%  Similarity=0.242  Sum_probs=69.2

Q ss_pred             HhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----CCCCcc
Q 025428          158 ENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LERQFQ  232 (253)
Q Consensus       158 ~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~~~~fD  232 (253)
                      .+....++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++|++.+|+.+++++++|+.+..     ..++||
T Consensus       139 ~~~~~~~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD  217 (318)
T d1wxxa2         139 LYMERFRGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFD  217 (318)
T ss_dssp             HHGGGCCEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             HHHHHhCCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCC
Confidence            3334457889999999999999998865 5599999999999999999999999989999999997742     237899


Q ss_pred             EEEEccc
Q 025428          233 LVMDKGT  239 (253)
Q Consensus       233 ~Vi~~~~  239 (253)
                      +|+++..
T Consensus       218 ~Vi~DpP  224 (318)
T d1wxxa2         218 LVVLDPP  224 (318)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9998754

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.16  E-value=6.3e-11  Score=101.26  Aligned_cols=79  Identities=18%  Similarity=0.230  Sum_probs=67.7

Q ss_pred             hccCCCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHHhc---CCCceEEEEeccCCCcCC-CCcc
Q 025428          159 NDKYLSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRD---GFSCIKFLVDDVLDTKLE-RQFQ  232 (253)
Q Consensus       159 l~~~~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~~~---g~~~i~~~~~D~~~~~~~-~~fD  232 (253)
                      .....++.+|||+|||+|.++..|++. |. .+|+++|+++++++.|+++++..   ...|+.++++|+.+.+++ ++||
T Consensus        91 ~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~~~~~~fD  170 (264)
T d1i9ga_          91 EGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSELPDGSVD  170 (264)
T ss_dssp             HTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCCCCTTCEE
T ss_pred             HhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEecccccccccCCCcc
Confidence            344578999999999999999999987 43 49999999999999999998764   245899999999988775 8999


Q ss_pred             EEEEc
Q 025428          233 LVMDK  237 (253)
Q Consensus       233 ~Vi~~  237 (253)
                      .|+++
T Consensus       171 aV~ld  175 (264)
T d1i9ga_         171 RAVLD  175 (264)
T ss_dssp             EEEEE
T ss_pred             eEEEe
Confidence            99874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.14  E-value=5.4e-11  Score=98.27  Aligned_cols=63  Identities=19%  Similarity=0.157  Sum_probs=56.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~  227 (253)
                      .++.+|||+|||+|..+..+++. +..+|+|+|+|+.|++.++++++..  .|+.++.+|+.....
T Consensus        55 kpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~  118 (209)
T d1nt2a_          55 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWK  118 (209)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGG
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhcc--CCceEEEeeccCccc
Confidence            68899999999999999999987 4458999999999999999998775  489999999988754

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.14  E-value=4.1e-11  Score=105.25  Aligned_cols=84  Identities=24%  Similarity=0.295  Sum_probs=71.4

Q ss_pred             HHHhccC-CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc-----CC
Q 025428          156 VEENDKY-LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-----LE  228 (253)
Q Consensus       156 ~~~l~~~-~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~-----~~  228 (253)
                      ...+... .++.+|||+|||+|.++..++..|+++|+++|+|+.+++.|++|++.+|+. +++++++|+.+..     ..
T Consensus       136 r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~~~~~~~~~  215 (324)
T d2as0a2         136 RLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEMEKLQKKG  215 (324)
T ss_dssp             HHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHTT
T ss_pred             HHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhhhHHHHhcc
Confidence            3344443 568999999999999999999998889999999999999999999999996 6999999987642     23


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      .+||+|+++..
T Consensus       216 ~~fD~Vi~DpP  226 (324)
T d2as0a2         216 EKFDIVVLDPP  226 (324)
T ss_dssp             CCEEEEEECCC
T ss_pred             CCCCchhcCCc
Confidence            78999998654

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.14  E-value=1.2e-10  Score=95.95  Aligned_cols=75  Identities=20%  Similarity=0.251  Sum_probs=65.4

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc--CC-CCccEEEEcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK--LE-RQFQLVMDKG  238 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~--~~-~~fD~Vi~~~  238 (253)
                      ....|||||||+|.++..+|+. +...++|+|+++.++..|.+++...+++|+.++++|+.++.  ++ .++|.|+++.
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~f  109 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF  109 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred             CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccc
Confidence            3458999999999999999998 34489999999999999999999999999999999998875  33 7899887644

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=99.14  E-value=1.9e-11  Score=97.88  Aligned_cols=90  Identities=19%  Similarity=0.232  Sum_probs=67.8

Q ss_pred             ccchHHHHhcc-CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCC--c
Q 025428          151 LKSEPVEENDK-YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDT--K  226 (253)
Q Consensus       151 ~~~~l~~~l~~-~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~--~  226 (253)
                      +...+..++.. ..++.+|||+|||+|.+++.++.+|+ +++++|+|+.+++.+++|++.+++.+ +....+|....  .
T Consensus        27 v~e~lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~  105 (171)
T d1ws6a1          27 LRKALFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAK  105 (171)
T ss_dssp             HHHHHHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHH
T ss_pred             HHHHHHHHhhccccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhccccccc
Confidence            34455555553 35788999999999999999999987 89999999999999999999998853 44444443211  1


Q ss_pred             -CCCCccEEEEccccc
Q 025428          227 -LERQFQLVMDKGTLD  241 (253)
Q Consensus       227 -~~~~fD~Vi~~~~l~  241 (253)
                       ...+||+|+++..++
T Consensus       106 ~~~~~fD~If~DPPY~  121 (171)
T d1ws6a1         106 AQGERFTVAFMAPPYA  121 (171)
T ss_dssp             HTTCCEEEEEECCCTT
T ss_pred             ccCCccceeEEccccc
Confidence             237899999876543

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.13  E-value=4.6e-11  Score=99.69  Aligned_cols=93  Identities=13%  Similarity=0.201  Sum_probs=74.4

Q ss_pred             ccchHHHHhc-cCCCCCEEEEEcCCCcHHHHHHHhc----CC---CcEEEEeCCHHHHHHHHHHHHhc-----CCCceEE
Q 025428          151 LKSEPVEEND-KYLSSWSVLDIGTGNGLLLQELSKQ----GF---SDLTGVDYSEDAINLAQSLANRD-----GFSCIKF  217 (253)
Q Consensus       151 ~~~~l~~~l~-~~~~~~~VLDiGcGtG~~~~~la~~----g~---~~v~gvD~s~~~l~~ar~~~~~~-----g~~~i~~  217 (253)
                      +...+++.+. ...++.+|||||||||+++..+++.    |.   .+|+++|+++++++.|++++...     ++.|+.+
T Consensus        66 ~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~  145 (223)
T d1r18a_          66 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  145 (223)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             hHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEE
Confidence            3455566553 4568899999999999999888876    21   27999999999999999987543     4458999


Q ss_pred             EEeccCCCcCC-CCccEEEEcccccee
Q 025428          218 LVDDVLDTKLE-RQFQLVMDKGTLDAI  243 (253)
Q Consensus       218 ~~~D~~~~~~~-~~fD~Vi~~~~l~~i  243 (253)
                      +++|..+...+ ++||.|++.+.++++
T Consensus       146 ~~~d~~~~~~~~~~fD~Iiv~~a~~~~  172 (223)
T d1r18a_         146 VEGDGRKGYPPNAPYNAIHVGAAAPDT  172 (223)
T ss_dssp             EESCGGGCCGGGCSEEEEEECSCBSSC
T ss_pred             EecccccccccccceeeEEEEeechhc
Confidence            99999886554 899999999988765

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=99.12  E-value=1.1e-10  Score=100.15  Aligned_cols=103  Identities=21%  Similarity=0.243  Sum_probs=79.0

Q ss_pred             cceeecCCC-cCCccccccchHHHHhccC---CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc
Q 025428          135 LCISISQGH-MLNHVEDLKSEPVEENDKY---LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (253)
Q Consensus       135 ~~~~i~~~~-~~~~~~~~~~~l~~~l~~~---~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~  210 (253)
                      +.+.+.++. +|...++.   +++.+.+.   ....++||+|||+|.++..++..+..+|+++|+|+.+++.|++|++++
T Consensus        80 ~~f~v~~~vlIPRpeTE~---lv~~~~~~~~~~~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~  156 (271)
T d1nv8a_          80 LSFLVEEGVFVPRPETEE---LVELALELIRKYGIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH  156 (271)
T ss_dssp             EEEECCTTSCCCCTTHHH---HHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT
T ss_pred             eEEEEecCccCchhhhhh---hhhhhhhhhccccccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHc
Confidence            445566665 66655443   33332221   345689999999999999999876669999999999999999999999


Q ss_pred             CCCc-eEEEEeccCCCcCC--CCccEEEEcccc
Q 025428          211 GFSC-IKFLVDDVLDTKLE--RQFQLVMDKGTL  240 (253)
Q Consensus       211 g~~~-i~~~~~D~~~~~~~--~~fD~Vi~~~~l  240 (253)
                      ++.+ +.+..+|+.+....  ++||+|++|...
T Consensus       157 ~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPY  189 (271)
T d1nv8a_         157 GVSDRFFVRKGEFLEPFKEKFASIEMILSNPPY  189 (271)
T ss_dssp             TCTTSEEEEESSTTGGGGGGTTTCCEEEECCCC
T ss_pred             CCCceeEEeecccccccccccCcccEEEEcccc
Confidence            9875 78889998876432  789999998753

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.12  E-value=9.6e-11  Score=98.15  Aligned_cols=78  Identities=8%  Similarity=0.042  Sum_probs=62.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC--CCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL--ERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~--~~~fD~Vi~~~~  239 (253)
                      .++.+|||+|||+|..+..+++.+ ...|+|+|+|+.|++.+++++...  .++..+.+|......  +..+|++++...
T Consensus        73 kpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~~~~~~~~v~~i~~~  150 (230)
T d1g8sa_          73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYANIVEKVDVIYED  150 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             CCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCcccccccceeEEeecc
Confidence            678999999999999999999983 348999999999999999987654  478889999887653  356777665444


Q ss_pred             cce
Q 025428          240 LDA  242 (253)
Q Consensus       240 l~~  242 (253)
                      +++
T Consensus       151 ~~~  153 (230)
T d1g8sa_         151 VAQ  153 (230)
T ss_dssp             CCS
T ss_pred             ccc
Confidence            443

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=99.11  E-value=1.8e-10  Score=97.73  Aligned_cols=79  Identities=20%  Similarity=0.187  Sum_probs=68.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      ....+|||||||+|.++..++++ +..+++++|+ +++++.++++++..++. ++.++.+|+.+. .+..||+|++..+|
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~-~p~~~D~v~~~~vL  157 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP-LPVTADVVLLSFVL  157 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC-CSCCEEEEEEESCG
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc-ccccchhhhccccc
Confidence            45579999999999999999998 2348999998 78999999999888875 599999999863 45679999999999


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      |++
T Consensus       158 h~~  160 (256)
T d1qzza2         158 LNW  160 (256)
T ss_dssp             GGS
T ss_pred             ccc
Confidence            986

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.08  E-value=8.2e-11  Score=102.54  Aligned_cols=83  Identities=17%  Similarity=0.221  Sum_probs=70.6

Q ss_pred             HHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc-----CC
Q 025428          156 VEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK-----LE  228 (253)
Q Consensus       156 ~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~-----~~  228 (253)
                      .+.+....++.+|||++||||.+++.++..|+ +|++||.|+.+++.|++|++.+|+.  +++|+++|+.+..     ..
T Consensus       124 ~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~  202 (309)
T d2igta1         124 KNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRG  202 (309)
T ss_dssp             HHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHT
T ss_pred             HHHHhhccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcC
Confidence            33455556788999999999999999999887 8999999999999999999999886  4999999997753     23


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      ++||+|+++..
T Consensus       203 ~~fD~IilDPP  213 (309)
T d2igta1         203 STYDIILTDPP  213 (309)
T ss_dssp             CCBSEEEECCC
T ss_pred             CCCCEEEECCC
Confidence            78999998643

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.5e-11  Score=102.07  Aligned_cols=80  Identities=18%  Similarity=0.223  Sum_probs=59.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc------CC-CcEEEEeCCHHHHHHHHHHHHhc-CCCceE--EEEeccCCC------c-
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ------GF-SDLTGVDYSEDAINLAQSLANRD-GFSCIK--FLVDDVLDT------K-  226 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~------g~-~~v~gvD~s~~~l~~ar~~~~~~-g~~~i~--~~~~D~~~~------~-  226 (253)
                      +..+|||||||+|.++..+++.      +. .+++|+|+|+.|++.++++++.. .+.++.  +.+.++.+.      + 
T Consensus        40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (280)
T d1jqea_          40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKK  119 (280)
T ss_dssp             SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSS
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccC
Confidence            4458999999999998877653      11 26899999999999999997653 333443  444444321      2 


Q ss_pred             CCCCccEEEEcccccee
Q 025428          227 LERQFQLVMDKGTLDAI  243 (253)
Q Consensus       227 ~~~~fD~Vi~~~~l~~i  243 (253)
                      .+++||+|++..+|||+
T Consensus       120 ~~~~fD~I~~~~~l~~~  136 (280)
T d1jqea_         120 ELQKWDFIHMIQMLYYV  136 (280)
T ss_dssp             SCCCEEEEEEESCGGGC
T ss_pred             CCCceeEEEEccceecC
Confidence            24899999999999998

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=3.5e-10  Score=96.63  Aligned_cols=81  Identities=17%  Similarity=0.206  Sum_probs=67.6

Q ss_pred             HHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcCCCCccE
Q 025428          157 EENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKLERQFQL  233 (253)
Q Consensus       157 ~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~~~~fD~  233 (253)
                      -......++.+|||+|||+|.++..+++. + ..+|+++|+++++++.|+++++..++. ++.+...|+........||.
T Consensus        96 i~~l~i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~~~~~~D~  175 (266)
T d1o54a_          96 AMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGFDEKDVDA  175 (266)
T ss_dssp             HHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCCSCCSEEE
T ss_pred             HHhhCCCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccccccceee
Confidence            33345578999999999999999999987 2 348999999999999999999999875 68999999866544578999


Q ss_pred             EEEc
Q 025428          234 VMDK  237 (253)
Q Consensus       234 Vi~~  237 (253)
                      |+.+
T Consensus       176 V~~d  179 (266)
T d1o54a_         176 LFLD  179 (266)
T ss_dssp             EEEC
T ss_pred             eEec
Confidence            8753

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.9e-10  Score=101.02  Aligned_cols=80  Identities=14%  Similarity=0.203  Sum_probs=64.1

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc-------C--CCceEEEEeccCCCcCC-C-
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-------G--FSCIKFLVDDVLDTKLE-R-  229 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~-------g--~~~i~~~~~D~~~~~~~-~-  229 (253)
                      +.++.+|||+|||+|.++..++.. ++.+++|||+|+.|++.|+++.+..       |  ..+++|+++|+.+.++. . 
T Consensus       149 l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~  228 (328)
T d1nw3a_         149 MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERI  228 (328)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHH
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccccccccccc
Confidence            367889999999999999999876 6668999999999999998876542       2  23799999999988754 2 


Q ss_pred             -CccEEEEccccc
Q 025428          230 -QFQLVMDKGTLD  241 (253)
Q Consensus       230 -~fD~Vi~~~~l~  241 (253)
                       ..|+|+++..++
T Consensus       229 ~~advi~~~~~~f  241 (328)
T d1nw3a_         229 ANTSVIFVNNFAF  241 (328)
T ss_dssp             HHCSEEEECCTTT
T ss_pred             CcceEEEEcceec
Confidence             247888766544

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=5.1e-10  Score=98.84  Aligned_cols=102  Identities=18%  Similarity=0.223  Sum_probs=82.8

Q ss_pred             cceeecCCCcCCccccccchHHHHhcc---CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC
Q 025428          135 LCISISQGHMLNHVEDLKSEPVEENDK---YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  211 (253)
Q Consensus       135 ~~~~i~~~~~~~~~~~~~~~l~~~l~~---~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g  211 (253)
                      +.+.+.+..+.+........+.+.+..   ..++.+|||+.||+|.++..|+++ +++|+|+|+++.+++.|++|++.+|
T Consensus       180 ~~~~i~p~sFfQ~N~~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~-~~~V~gvE~~~~ai~~A~~na~~n~  258 (358)
T d1uwva2         180 LRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNG  258 (358)
T ss_dssp             EEEECCSSSCCCSBHHHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTT
T ss_pred             EEEEECCchhhccchhhhhHHHHHHHHhhccCCCceEEEecccccccchhcccc-ccEEEeccCcHHHHHHHHHhHHhcc
Confidence            445666777777666666666655443   356789999999999999999998 5599999999999999999999999


Q ss_pred             CCceEEEEeccCCCcC-----CCCccEEEEc
Q 025428          212 FSCIKFLVDDVLDTKL-----ERQFQLVMDK  237 (253)
Q Consensus       212 ~~~i~~~~~D~~~~~~-----~~~fD~Vi~~  237 (253)
                      +.|++|+.+|..+...     ..++|+|+.+
T Consensus       259 i~n~~~~~~~~~~~~~~~~~~~~~~d~vilD  289 (358)
T d1uwva2         259 LQNVTFYHENLEEDVTKQPWAKNGFDKVLLD  289 (358)
T ss_dssp             CCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred             cccceeeecchhhhhhhhhhhhccCceEEeC
Confidence            9999999999877531     2678998875

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.00  E-value=5.1e-10  Score=97.91  Aligned_cols=81  Identities=14%  Similarity=0.121  Sum_probs=69.9

Q ss_pred             hccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCc-----CCCCc
Q 025428          159 NDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTK-----LERQF  231 (253)
Q Consensus       159 l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~-----~~~~f  231 (253)
                      .....++.+|||++||+|.+++.++..|+.+|+++|+|+.+++.+++|++.+++.  +++++++|+.+..     ..++|
T Consensus       139 ~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~f  218 (317)
T d2b78a2         139 INGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTY  218 (317)
T ss_dssp             HHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCE
T ss_pred             HHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCC
Confidence            3455678999999999999999999888889999999999999999999999884  6999999997652     13689


Q ss_pred             cEEEEccc
Q 025428          232 QLVMDKGT  239 (253)
Q Consensus       232 D~Vi~~~~  239 (253)
                      |+|+++..
T Consensus       219 D~Ii~DPP  226 (317)
T d2b78a2         219 DIIIIDPP  226 (317)
T ss_dssp             EEEEECCC
T ss_pred             CEEEEcCh
Confidence            99998643

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.95  E-value=3.5e-10  Score=96.10  Aligned_cols=83  Identities=18%  Similarity=0.164  Sum_probs=61.8

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-----------------------------
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-----------------------------  213 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-----------------------------  213 (253)
                      .++.+|||||||+|.+....+..++.+|+|+|+|+.|++.+++++......                             
T Consensus        53 ~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (263)
T d2g72a1          53 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA  132 (263)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhh
Confidence            467899999999998876666555669999999999999999887543210                             


Q ss_pred             -ceEEEEeccCCCc------C-CCCccEEEEccccceecc
Q 025428          214 -CIKFLVDDVLDTK------L-ERQFQLVMDKGTLDAIGL  245 (253)
Q Consensus       214 -~i~~~~~D~~~~~------~-~~~fD~Vi~~~~l~~i~~  245 (253)
                       .......|+....      . +++||+|++..+|||+..
T Consensus       133 ~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~  172 (263)
T d2g72a1         133 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSP  172 (263)
T ss_dssp             HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCS
T ss_pred             hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHcc
Confidence             1234455664422      1 258999999999999953

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.94  E-value=6.3e-10  Score=89.75  Aligned_cols=98  Identities=15%  Similarity=0.087  Sum_probs=76.2

Q ss_pred             cCCccccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCc--eEEEEec
Q 025428          144 MLNHVEDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSC--IKFLVDD  221 (253)
Q Consensus       144 ~~~~~~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~--i~~~~~D  221 (253)
                      +..+.+.+..++...+.....+.+|||+.||||.+++..+.+|+.+|+.||.+..+++..++|++..+..+  ..+...|
T Consensus        23 ~RPt~~~vrealFn~l~~~~~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d  102 (183)
T d2ifta1          23 LRPTGDRVKETLFNWLMPYIHQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQS  102 (183)
T ss_dssp             -----CHHHHHHHHHHHHHHTTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSC
T ss_pred             cCcCcHHHHHHHHHHhhhhcccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhccccccccccccc
Confidence            34444567777888877656788999999999999999999999999999999999999999999887753  6667776


Q ss_pred             cCCCc---C-CCCccEEEEccccc
Q 025428          222 VLDTK---L-ERQFQLVMDKGTLD  241 (253)
Q Consensus       222 ~~~~~---~-~~~fD~Vi~~~~l~  241 (253)
                      +.+..   . ..+||+|++...++
T Consensus       103 ~~~~l~~~~~~~~fDlIFlDPPY~  126 (183)
T d2ifta1         103 SLDFLKQPQNQPHFDVVFLDPPFH  126 (183)
T ss_dssp             HHHHTTSCCSSCCEEEEEECCCSS
T ss_pred             ccccccccccCCcccEEEechhHh
Confidence            54432   2 25799999876654

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=1.9e-09  Score=94.45  Aligned_cols=79  Identities=20%  Similarity=0.191  Sum_probs=63.2

Q ss_pred             hccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcC-----------CCceEEEEeccCCC
Q 025428          159 NDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDG-----------FSCIKFLVDDVLDT  225 (253)
Q Consensus       159 l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g-----------~~~i~~~~~D~~~~  225 (253)
                      .....++.+|||+|||+|.++..|++. | ..+|+++|+++++++.|++|++..+           ..|+.+.++|+.+.
T Consensus        93 ~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~  172 (324)
T d2b25a1          93 MMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGA  172 (324)
T ss_dssp             HHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCC
T ss_pred             HhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhc
Confidence            345578999999999999999999987 3 3389999999999999999987532           24799999999876


Q ss_pred             cC---CCCccEEEEc
Q 025428          226 KL---ERQFQLVMDK  237 (253)
Q Consensus       226 ~~---~~~fD~Vi~~  237 (253)
                      ..   ...||.|+++
T Consensus       173 ~~~~~~~~fD~V~LD  187 (324)
T d2b25a1         173 TEDIKSLTFDAVALD  187 (324)
T ss_dssp             C-------EEEEEEC
T ss_pred             ccccCCCCcceEeec
Confidence            53   2689999864

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.89  E-value=3e-09  Score=88.64  Aligned_cols=73  Identities=15%  Similarity=0.293  Sum_probs=60.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----CCCccEEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMD  236 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~~~fD~Vi~  236 (253)
                      .++.+|||+|||+|..+..+++. |. .+|+|+|+|+.|++.++++++..  .++..+..|......    ...+|+|++
T Consensus        72 ~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~--~~~~~i~~d~~~~~~~~~~~~~vD~i~~  149 (227)
T d1g8aa_          72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYRALVPKVDVIFE  149 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGTTTCCCEEEEEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc--CCceEEEEECCCcccccccccceEEEEE
Confidence            68899999999999999999997 43 48999999999999999987654  478888888866531    267888876


Q ss_pred             c
Q 025428          237 K  237 (253)
Q Consensus       237 ~  237 (253)
                      .
T Consensus       150 d  150 (227)
T d1g8aa_         150 D  150 (227)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=1.2e-08  Score=91.80  Aligned_cols=77  Identities=17%  Similarity=0.248  Sum_probs=57.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcC-------C--CceEE-EEeccCCCcC-C--
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG-------F--SCIKF-LVDDVLDTKL-E--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g-------~--~~i~~-~~~D~~~~~~-~--  228 (253)
                      .++.++||||||+|.++..+|.. |+++++|||+|+.|++.|+++++..+       .  ..+.+ ..++..+.+. .  
T Consensus       215 kpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~f~~~~~~d~~  294 (406)
T d1u2za_         215 KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAEL  294 (406)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHHH
T ss_pred             CCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeechhhccccccc
Confidence            68899999999999999999987 77789999999999999999886532       1  12333 3455544332 1  


Q ss_pred             -CCccEEEEccc
Q 025428          229 -RQFQLVMDKGT  239 (253)
Q Consensus       229 -~~fD~Vi~~~~  239 (253)
                       ..+|+|+++..
T Consensus       295 ~~~adVV~inn~  306 (406)
T d1u2za_         295 IPQCDVILVNNF  306 (406)
T ss_dssp             GGGCSEEEECCT
T ss_pred             cccceEEEEecc
Confidence             45788887653

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.75  E-value=1.4e-08  Score=84.94  Aligned_cols=75  Identities=16%  Similarity=0.206  Sum_probs=61.9

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l  240 (253)
                      .++.+|||||||+|.++..|++.+. +|+++|+++.+++..+++...  .+|++++++|+.++.++ .....|+.|-.+
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~~~-~v~avE~D~~l~~~l~~~~~~--~~n~~i~~~D~l~~~~~~~~~~~vv~NLPY   95 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQRCN-FVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQFKFPKNQSYKIFGNIPY   95 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHSS-EEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGCCCCSSCCCEEEEECCG
T ss_pred             CCCCeEEEECCCchHHHHHHHhCcC-ceEEEeeccchHHHHHHHhhc--ccchhhhhhhhhhccccccccceeeeeehh
Confidence            5788999999999999999999954 999999999999999987653  35899999999998765 333456665543

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=8.8e-09  Score=84.95  Aligned_cols=88  Identities=16%  Similarity=0.180  Sum_probs=71.3

Q ss_pred             ccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCc-
Q 025428          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTK-  226 (253)
Q Consensus       151 ~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~-  226 (253)
                      ....++..+.+..+.++|||+|||+|..+..+++.  ...+|+++|+++++++.|+++++..|+. +|+++.+|..+.. 
T Consensus        43 ~~G~lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~  122 (214)
T d2cl5a1          43 AKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIP  122 (214)
T ss_dssp             HHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGG
T ss_pred             HHHHHHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeecccccccc
Confidence            34455555555557789999999999999999975  2349999999999999999999999987 4999999987752 


Q ss_pred             -----CC-CCccEEEEcc
Q 025428          227 -----LE-RQFQLVMDKG  238 (253)
Q Consensus       227 -----~~-~~fD~Vi~~~  238 (253)
                           .. ++||+|+..+
T Consensus       123 ~l~~~~~~~~~D~ifiD~  140 (214)
T d2cl5a1         123 QLKKKYDVDTLDMVFLDH  140 (214)
T ss_dssp             GHHHHSCCCCEEEEEECS
T ss_pred             chhhcccccccceeeecc
Confidence                 12 6799999864

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.72  E-value=2e-08  Score=81.44  Aligned_cols=82  Identities=12%  Similarity=0.142  Sum_probs=66.6

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L  227 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~  227 (253)
                      ++++.+. +.++..+||++||+|.++..+++. +..+|+|+|.+++|++.|+++++..+ .++.++++++.++.     +
T Consensus        14 evi~~l~-~~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~~~~~~~   91 (192)
T d1m6ya2          14 EVIEFLK-PEDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTL   91 (192)
T ss_dssp             HHHHHHC-CCTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHT
T ss_pred             HHHHhhC-CCCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHHHHHHHc
Confidence            3444443 367889999999999999999987 44599999999999999999998765 37999999987753     2


Q ss_pred             C-CCccEEEEc
Q 025428          228 E-RQFQLVMDK  237 (253)
Q Consensus       228 ~-~~fD~Vi~~  237 (253)
                      . ++||.|+..
T Consensus        92 ~~~~vdgIl~D  102 (192)
T d1m6ya2          92 GIEKVDGILMD  102 (192)
T ss_dssp             TCSCEEEEEEE
T ss_pred             CCCCcceeeec
Confidence            2 789988764

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=2e-08  Score=83.15  Aligned_cols=89  Identities=13%  Similarity=0.146  Sum_probs=74.2

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCc
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK  226 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~  226 (253)
                      ..+..++..+.+..+.++||+||||+|..+..++.. + ..+++++|++++..+.|+++++..|+.+ ++++.+|+.+..
T Consensus        45 ~~~g~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l  124 (219)
T d2avda1          45 CEQAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETL  124 (219)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcc
Confidence            345677777777778899999999999999999976 2 3499999999999999999999999875 999999986642


Q ss_pred             -------CCCCccEEEEcc
Q 025428          227 -------LERQFQLVMDKG  238 (253)
Q Consensus       227 -------~~~~fD~Vi~~~  238 (253)
                             ..++||+|+...
T Consensus       125 ~~~~~~~~~~~fD~ifiD~  143 (219)
T d2avda1         125 DELLAAGEAGTFDVAVVDA  143 (219)
T ss_dssp             HHHHHTTCTTCEEEEEECS
T ss_pred             hhhhhhcccCCccEEEEeC
Confidence                   136899999754

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.60  E-value=1.6e-09  Score=91.35  Aligned_cols=76  Identities=20%  Similarity=0.300  Sum_probs=63.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~~~~l~  241 (253)
                      .++.+|||||||+|.++..|++.+. +|++||+++.+++.++++...  ..|++++++|+.+++++ ..++.|+++-.++
T Consensus        28 ~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~--~~n~~ii~~D~l~~~~~~~~~~~vv~NLPY~  104 (245)
T d1yuba_          28 KETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKL--NTRVTLIHQDILQFQFPNKQRYKIVGNIPYH  104 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTT--CSEEEECCSCCTTTTCCCSSEEEEEEECCSS
T ss_pred             CCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhh--ccchhhhhhhhhccccccceeeeEeeeeehh
Confidence            4678999999999999999999955 999999999999988776543  35899999999998876 5667788776543

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.59  E-value=3.3e-08  Score=85.97  Aligned_cols=81  Identities=25%  Similarity=0.230  Sum_probs=66.2

Q ss_pred             cCCCCCEEEEEcCCCcHHHHHHHhc----CC--CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEE
Q 025428          161 KYLSSWSVLDIGTGNGLLLQELSKQ----GF--SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLV  234 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~~~la~~----g~--~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~V  234 (253)
                      ...++.+|||.|||+|.++..+..+    +.  .+++|+|+++.+++.|+.++...+. +..+.++|........+||+|
T Consensus       114 ~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~fD~v  192 (328)
T d2f8la1         114 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANLLVDPVDVV  192 (328)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCCCCCCEEEE
T ss_pred             CCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhh-hhhhhcccccccccccccccc
Confidence            3356679999999999999888753    11  2799999999999999999887765 677888888776666899999


Q ss_pred             EEccccce
Q 025428          235 MDKGTLDA  242 (253)
Q Consensus       235 i~~~~l~~  242 (253)
                      +++..+..
T Consensus       193 i~NPPy~~  200 (328)
T d2f8la1         193 ISDLPVGY  200 (328)
T ss_dssp             EEECCCSE
T ss_pred             ccCCCCCC
Confidence            99988743

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=98.53  E-value=2.5e-07  Score=75.67  Aligned_cols=76  Identities=20%  Similarity=0.184  Sum_probs=68.1

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      ++.+|||+|||.|.-++.+|-. +..+++.+|.+..-+...++.....++.|++++++.+++.....+||+|++..+
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fD~V~sRA~  141 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPSEPPFDGVISRAF  141 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCCCSCEEEEECSCS
T ss_pred             cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhccccccceehhhhh
Confidence            4579999999999999999976 335999999999999999999999999999999999999876678999998765

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.47  E-value=9.2e-08  Score=79.43  Aligned_cols=89  Identities=12%  Similarity=0.177  Sum_probs=73.3

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc-C-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCc
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ-G-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTK  226 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~-g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~  226 (253)
                      ..+..++.++.+..+.++||+|||++|.-+..++.. + ..+++.+|.+++..+.|++++++.|+.+ |+++++++.+..
T Consensus        45 ~~~g~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L  124 (227)
T d1susa1          45 ADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVL  124 (227)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHH
Confidence            335567777776677889999999999999999965 2 3499999999999999999999999874 999999997652


Q ss_pred             --------CCCCccEEEEcc
Q 025428          227 --------LERQFQLVMDKG  238 (253)
Q Consensus       227 --------~~~~fD~Vi~~~  238 (253)
                              ..++||+|+...
T Consensus       125 ~~l~~~~~~~~~fD~iFiDa  144 (227)
T d1susa1         125 DEMIKDEKNHGSYDFIFVDA  144 (227)
T ss_dssp             HHHHHCGGGTTCBSEEEECS
T ss_pred             HHHHhccccCCceeEEEecc
Confidence                    135899999754

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.5e-06  Score=74.56  Aligned_cols=93  Identities=15%  Similarity=0.144  Sum_probs=76.2

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~  227 (253)
                      +..+.+...+..+.++.+|||+++|.|.-+..++..  +...++++|+++.-++..++++++.|+.++.+...|...+..
T Consensus        80 D~sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~  159 (293)
T d2b9ea1          80 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP  159 (293)
T ss_dssp             CTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT
T ss_pred             CCcccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcc
Confidence            444556666666678999999999999999988865  344899999999999999999999999999999999887643


Q ss_pred             C----CCccEEEEccccce
Q 025428          228 E----RQFQLVMDKGTLDA  242 (253)
Q Consensus       228 ~----~~fD~Vi~~~~l~~  242 (253)
                      .    +.||.|+.....-.
T Consensus       160 ~~~~~~~fD~VL~DaPCSg  178 (293)
T d2b9ea1         160 SDPRYHEVHYILLDPSCSG  178 (293)
T ss_dssp             TCGGGTTEEEEEECCCCCC
T ss_pred             cccccceeeEEeecCcccc
Confidence            2    67999998765443

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=9.2e-07  Score=75.37  Aligned_cols=77  Identities=19%  Similarity=0.261  Sum_probs=64.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCC-CceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGF-SCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~-~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      .++..||+||+|+|.++..|++.+. +|+++++++.+++..++++..... .+++++++|+....++. +..|+.|-.++
T Consensus        20 ~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~~~~-~~~vV~NLPY~   97 (278)
T d1zq9a1          20 RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTDLPF-FDTCVANLPYQ   97 (278)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSCCCC-CSEEEEECCGG
T ss_pred             CCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhhhhh-hhhhhcchHHH
Confidence            5678999999999999999999965 999999999999999998866543 47999999999886654 45677765443

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.33  E-value=2.4e-07  Score=75.09  Aligned_cols=85  Identities=16%  Similarity=0.247  Sum_probs=62.9

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~  227 (253)
                      .+...|++++.. .++.+|||.|||+|.++..+.+.  ....++|+|+++.++..+         .+..++++|......
T Consensus         6 ~i~~~m~~l~~~-~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~---------~~~~~~~~~~~~~~~   75 (223)
T d2ih2a1           6 EVVDFMVSLAEA-PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILADFLLWEP   75 (223)
T ss_dssp             HHHHHHHHHCCC-CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEESCGGGCCC
T ss_pred             HHHHHHHHhcCC-CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhc---------ccceeeeeehhcccc
Confidence            344445555443 57789999999999999888765  234799999998755432         245788899887766


Q ss_pred             CCCccEEEEccccceec
Q 025428          228 ERQFQLVMDKGTLDAIG  244 (253)
Q Consensus       228 ~~~fD~Vi~~~~l~~i~  244 (253)
                      ...||+|+++..+....
T Consensus        76 ~~~fd~ii~npP~~~~~   92 (223)
T d2ih2a1          76 GEAFDLILGNPPYGIVG   92 (223)
T ss_dssp             SSCEEEEEECCCCCCBS
T ss_pred             ccccceecccCcccccc
Confidence            68999999998876553

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.22  E-value=3.2e-07  Score=77.19  Aligned_cols=70  Identities=14%  Similarity=0.172  Sum_probs=56.3

Q ss_pred             hHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC
Q 025428          154 EPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (253)
Q Consensus       154 ~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~  227 (253)
                      .+++.+. ..++..||+||||+|.++..|++.+ .+|+++|+++.+++..+++....  .|++++++|+.++.+
T Consensus        12 ~Iv~~~~-~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~--~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          12 SIVSAIN-PQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHHC-CCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCH
T ss_pred             HHHHhcC-CCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhc--cchhHHhhhhhhhcc
Confidence            3444443 2467899999999999999999985 59999999999999998754322  489999999998754

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.15  E-value=1.2e-06  Score=73.12  Aligned_cols=72  Identities=18%  Similarity=0.194  Sum_probs=55.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLD  241 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~  241 (253)
                      ....+|||||||+|.++..++++ +.-+++.+|+ ++.++.+      ....+++++.+|+.+. .+ ..|+|++..+||
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~------~~~~ri~~~~gd~~~~-~p-~~D~~~l~~vLh  150 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA------PPLSGIEHVGGDMFAS-VP-QGDAMILKAVCH  150 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC------CCCTTEEEEECCTTTC-CC-CEEEEEEESSGG
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc------CCCCCeEEecCCcccc-cc-cceEEEEehhhh
Confidence            34579999999999999999988 3348999998 4444321      2235799999999864 33 459999999999


Q ss_pred             ee
Q 025428          242 AI  243 (253)
Q Consensus       242 ~i  243 (253)
                      ..
T Consensus       151 ~~  152 (244)
T d1fp1d2         151 NW  152 (244)
T ss_dssp             GS
T ss_pred             hC
Confidence            85

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.09  E-value=1.8e-06  Score=69.43  Aligned_cols=81  Identities=12%  Similarity=0.155  Sum_probs=54.7

Q ss_pred             CCCCEEEEEcCCCcHH----HHHHHhc----CCC-cEEEEeCCHHHHHHHHHHH--------------H----hcCC---
Q 025428          163 LSSWSVLDIGTGNGLL----LQELSKQ----GFS-DLTGVDYSEDAINLAQSLA--------------N----RDGF---  212 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~----~~~la~~----g~~-~v~gvD~s~~~l~~ar~~~--------------~----~~g~---  212 (253)
                      .+..+|+++|||||--    ++.+...    +.. +++|+|+|+.+|+.|++-.              .    ..+-   
T Consensus        23 ~~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~  102 (193)
T d1af7a2          23 HGEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHE  102 (193)
T ss_dssp             CSCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSC
T ss_pred             CCCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCcc
Confidence            3456999999999984    3334332    111 6999999999999998521              0    0000   


Q ss_pred             ----------CceEEEEeccCCCcC--CCCccEEEEcccccee
Q 025428          213 ----------SCIKFLVDDVLDTKL--ERQFQLVMDKGTLDAI  243 (253)
Q Consensus       213 ----------~~i~~~~~D~~~~~~--~~~fD~Vi~~~~l~~i  243 (253)
                                ..+.+...+......  .+.||+|+|.++|.++
T Consensus       103 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf  145 (193)
T d1af7a2         103 GLVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF  145 (193)
T ss_dssp             SEEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS
T ss_pred             ceeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc
Confidence                      124566666665432  3789999999999986

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=98.07  E-value=2e-06  Score=71.79  Aligned_cols=71  Identities=15%  Similarity=0.174  Sum_probs=55.7

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      ...+|||||||+|.++..++++ +..++++.|. ++.++.+.      ...+++++.+|+.+.. + .+|++++..+||.
T Consensus        80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~------~~~rv~~~~gD~f~~~-p-~aD~~~l~~vLHd  150 (244)
T d1fp2a2          80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS------GSNNLTYVGGDMFTSI-P-NADAVLLKYILHN  150 (244)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC------CBTTEEEEECCTTTCC-C-CCSEEEEESCGGG
T ss_pred             CceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc------ccCceEEEecCcccCC-C-CCcEEEEEeeccc
Confidence            4468999999999999999988 3349999998 44544321      2247999999998743 3 5799999999997


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      .
T Consensus       151 w  151 (244)
T d1fp2a2         151 W  151 (244)
T ss_dssp             S
T ss_pred             C
Confidence            5

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.06  E-value=2.2e-06  Score=72.82  Aligned_cols=76  Identities=22%  Similarity=0.346  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc----------CCCceEEEEeccCCCcC-CCCc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD----------GFSCIKFLVDDVLDTKL-ERQF  231 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~----------g~~~i~~~~~D~~~~~~-~~~f  231 (253)
                      ....+||.||+|.|..+..+++++..+|+++|+++.+++.|++.....          .-++++++.+|+..... .++|
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~y  150 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNRGF  150 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCCCE
T ss_pred             CCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccCCC
Confidence            466899999999999999999887779999999999999999865322          12479999999976532 3789


Q ss_pred             cEEEEcc
Q 025428          232 QLVMDKG  238 (253)
Q Consensus       232 D~Vi~~~  238 (253)
                      |+|+...
T Consensus       151 DvIi~D~  157 (276)
T d1mjfa_         151 DVIIADS  157 (276)
T ss_dssp             EEEEEEC
T ss_pred             CEEEEeC
Confidence            9999754

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=98.03  E-value=4.9e-06  Score=74.58  Aligned_cols=93  Identities=17%  Similarity=0.172  Sum_probs=73.8

Q ss_pred             ccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc----C----------CCcEEEEeCCHHHHHHHHHHHHhcCCC-
Q 025428          149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ----G----------FSDLTGVDYSEDAINLAQSLANRDGFS-  213 (253)
Q Consensus       149 ~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~----g----------~~~v~gvD~s~~~l~~ar~~~~~~g~~-  213 (253)
                      .++...|++++.. ..+.+|+|.+||+|.++..+.++    +          ...+.|+|+++.+...|+.++...|+. 
T Consensus       148 ~~Iv~~mv~ll~~-~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~~  226 (425)
T d2okca1         148 RPLIQAMVDCINP-QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT  226 (425)
T ss_dssp             HHHHHHHHHHHCC-CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred             hhhhHhhheeccC-cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCcc
Confidence            4555666666544 46789999999999999888764    1          125999999999999999998877764 


Q ss_pred             -ceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          214 -CIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       214 -~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                       +..+.++|........+||+|+++..+..
T Consensus       227 ~~~~i~~~d~l~~~~~~~fD~Ii~NPPfg~  256 (425)
T d2okca1         227 DRSPIVCEDSLEKEPSTLVDVILANPPFGT  256 (425)
T ss_dssp             SCCSEEECCTTTSCCSSCEEEEEECCCSSC
T ss_pred             ccceeecCchhhhhcccccceEEecCCCCC
Confidence             46788899887766689999999998854

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.00  E-value=3e-06  Score=75.05  Aligned_cols=75  Identities=21%  Similarity=0.088  Sum_probs=60.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCc---------------eEEEEeccCCCc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSC---------------IKFLVDDVLDTK  226 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~---------------i~~~~~D~~~~~  226 (253)
                      .++.+|||..||||..++..+.. |..+|++.|+|+.+++.+++|++.|++.+               +.+.+.|+..+.
T Consensus        44 ~~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          44 LNPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             hCCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            46789999999999999987764 67799999999999999999999887643               556666665443


Q ss_pred             C--CCCccEEEEc
Q 025428          227 L--ERQFQLVMDK  237 (253)
Q Consensus       227 ~--~~~fD~Vi~~  237 (253)
                      .  ...||+|...
T Consensus       124 ~~~~~~fDvIDiD  136 (375)
T d2dula1         124 AERHRYFHFIDLD  136 (375)
T ss_dssp             HHSTTCEEEEEEC
T ss_pred             HhhcCcCCcccCC
Confidence            2  3679988764

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.92  E-value=1.6e-05  Score=68.53  Aligned_cols=92  Identities=12%  Similarity=0.028  Sum_probs=75.5

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL  227 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~  227 (253)
                      +..+.+...+..+.++.+|||+++|.|.=+..++..  +...++++|+++.-+...++++++.|+.++.+...|...++.
T Consensus       102 D~aS~l~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~  181 (313)
T d1ixka_         102 EASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE  181 (313)
T ss_dssp             CHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG
T ss_pred             cccccchhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccc
Confidence            445566666667788999999999999998888876  233799999999999999999999999899888888877654


Q ss_pred             -CCCccEEEEccccc
Q 025428          228 -ERQFQLVMDKGTLD  241 (253)
Q Consensus       228 -~~~fD~Vi~~~~l~  241 (253)
                       ...||.|++....-
T Consensus       182 ~~~~fD~ILvDaPCS  196 (313)
T d1ixka_         182 LNVEFDKILLDAPCT  196 (313)
T ss_dssp             GCCCEEEEEEECCTT
T ss_pred             ccccccEEEEccccc
Confidence             47899999865433

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.91  E-value=1.1e-05  Score=66.89  Aligned_cols=76  Identities=16%  Similarity=0.199  Sum_probs=65.6

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----CCCccEEEEcc
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----ERQFQLVMDKG  238 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~~~fD~Vi~~~  238 (253)
                      ...+++|||||.|.-++.++-. +..+++.+|.+..-+...+......++.|+.++++.++++..    .++||+|++..
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA  149 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA  149 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence            4569999999999999999974 555999999999999999999999999999999998876542    36899999976


Q ss_pred             c
Q 025428          239 T  239 (253)
Q Consensus       239 ~  239 (253)
                      +
T Consensus       150 v  150 (239)
T d1xdza_         150 V  150 (239)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.88  E-value=6.8e-06  Score=70.93  Aligned_cols=76  Identities=21%  Similarity=0.240  Sum_probs=62.1

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc--C---CCceEEEEeccCCCc--CCCCccEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--G---FSCIKFLVDDVLDTK--LERQFQLV  234 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~--g---~~~i~~~~~D~~~~~--~~~~fD~V  234 (253)
                      ...++||.||+|.|..+..++++ +..+|++||+++++++.|++.+...  +   -++++++.+|+.+.-  .+++||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            45679999999999999999887 4569999999999999999986431  1   136999999998863  24789999


Q ss_pred             EEcc
Q 025428          235 MDKG  238 (253)
Q Consensus       235 i~~~  238 (253)
                      +...
T Consensus       156 i~D~  159 (312)
T d1uira_         156 IIDL  159 (312)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9643

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=97.87  E-value=1.1e-05  Score=67.41  Aligned_cols=76  Identities=14%  Similarity=0.061  Sum_probs=59.5

Q ss_pred             CCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc---C------CCceEEEEeccCCCcC--CCCccE
Q 025428          165 SWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD---G------FSCIKFLVDDVLDTKL--ERQFQL  233 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~---g------~~~i~~~~~D~~~~~~--~~~fD~  233 (253)
                      ..+|||.-||.|..+..++..|+ +|+++|.++.+....+..+++.   .      ..+++++++|..++..  ..+||+
T Consensus        89 ~~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~Dv  167 (250)
T d2oyra1          89 LPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (250)
T ss_dssp             CCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CCEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCE
Confidence            34899999999999999999987 8999999998776666554432   1      1379999999877542  367999


Q ss_pred             EEEccccc
Q 025428          234 VMDKGTLD  241 (253)
Q Consensus       234 Vi~~~~l~  241 (253)
                      |+....+.
T Consensus       168 IYlDPMFp  175 (250)
T d2oyra1         168 VYLDPMFP  175 (250)
T ss_dssp             EEECCCCC
T ss_pred             EEECCCCc
Confidence            99876653

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.81  E-value=1.3e-05  Score=68.67  Aligned_cols=76  Identities=18%  Similarity=0.268  Sum_probs=62.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc--CC--CceEEEEeccCCCcC--CCCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTKL--ERQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~--g~--~~i~~~~~D~~~~~~--~~~fD~Vi  235 (253)
                      ...++||-||.|.|..+..++++ +..+|+++|+++.+++.|++.+...  .+  ++++++.+|+.+.-.  +++||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            45689999999999999999988 4568999999999999999976432  12  379999999987643  37899999


Q ss_pred             Ecc
Q 025428          236 DKG  238 (253)
Q Consensus       236 ~~~  238 (253)
                      ...
T Consensus       168 ~D~  170 (295)
T d1inla_         168 IDS  170 (295)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            753

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.80  E-value=3.5e-05  Score=61.26  Aligned_cols=72  Identities=14%  Similarity=0.165  Sum_probs=59.2

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----CC-CCccEEE
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LE-RQFQLVM  235 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~~-~~fD~Vi  235 (253)
                      +.++..++|..+|.|.++..+++.+. +|+|+|.++++++.+++..    ..++.++++++.++.     .. +.+|.|+
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~~~-~viaiD~D~~ai~~a~~~~----~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl   90 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILERGG-RVIGLDQDPEAVARAKGLH----LPGLTVVQGNFRHLKRHLAALGVERVDGIL   90 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHTC----CTTEEEEESCGGGHHHHHHHTTCSCEEEEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcccC-cEEEEhhhhhHHHHHhhcc----ccceeEeehHHHHHHHHHHHcCCCccCEEE
Confidence            36888999999999999999999854 9999999999999998742    247899999988764     12 6799888


Q ss_pred             Ecc
Q 025428          236 DKG  238 (253)
Q Consensus       236 ~~~  238 (253)
                      ...
T Consensus        91 ~DL   93 (182)
T d1wg8a2          91 ADL   93 (182)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            754

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.76  E-value=2.5e-05  Score=66.04  Aligned_cols=76  Identities=24%  Similarity=0.332  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc-C-C--CceEEEEeccCCCc--CCCCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD-G-F--SCIKFLVDDVLDTK--LERQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~-g-~--~~i~~~~~D~~~~~--~~~~fD~Vi  235 (253)
                      ...++||-||.|.|..+..+.++ +..+|+.+|+++++++.|++..... + +  ++++++.+|....-  .+++||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            45679999999999999999987 5679999999999999999976432 1 1  37999999987753  247899999


Q ss_pred             Ecc
Q 025428          236 DKG  238 (253)
Q Consensus       236 ~~~  238 (253)
                      ...
T Consensus       154 ~D~  156 (274)
T d1iy9a_         154 VDS  156 (274)
T ss_dssp             ESC
T ss_pred             EcC
Confidence            864

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.75  E-value=3.1e-05  Score=65.68  Aligned_cols=93  Identities=14%  Similarity=0.095  Sum_probs=73.1

Q ss_pred             ccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCC-CcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-
Q 025428          149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGF-SDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-  226 (253)
Q Consensus       149 ~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~-~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-  226 (253)
                      ++..+.+...+..+.++.+|||+++|.|.-+..++..+. ..|+++|+++.-++..++++++.|+.++.....|..... 
T Consensus        87 QD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~  166 (284)
T d1sqga2          87 QDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQW  166 (284)
T ss_dssp             CCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHH
T ss_pred             ccccccccccccCccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchh
Confidence            355556666666778899999999999999999998743 479999999999999999999999977766666554332 


Q ss_pred             -CCCCccEEEEccccc
Q 025428          227 -LERQFQLVMDKGTLD  241 (253)
Q Consensus       227 -~~~~fD~Vi~~~~l~  241 (253)
                       .+..||.|++....-
T Consensus       167 ~~~~~fd~IL~DaPCS  182 (284)
T d1sqga2         167 CGEQQFDRILLDAPCS  182 (284)
T ss_dssp             HTTCCEEEEEEECCCC
T ss_pred             cccccccEEEEecccc
Confidence             247899999865443

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=2e-05  Score=67.07  Aligned_cols=76  Identities=22%  Similarity=0.401  Sum_probs=62.6

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc--CC--CceEEEEeccCCCcC--CCCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTKL--ERQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~--g~--~~i~~~~~D~~~~~~--~~~fD~Vi  235 (253)
                      ...++||-||.|.|..+..+.++ +..+++++|+++++++.|++.+...  ..  ++++++.+|+...-.  .++||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            45689999999999999999988 5679999999999999999976431  11  379999999877642  37899999


Q ss_pred             Ecc
Q 025428          236 DKG  238 (253)
Q Consensus       236 ~~~  238 (253)
                      ...
T Consensus       157 ~D~  159 (285)
T d2o07a1         157 TDS  159 (285)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            853

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=8.8e-05  Score=58.69  Aligned_cols=70  Identities=23%  Similarity=0.257  Sum_probs=55.7

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---------CCCCc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LERQF  231 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---------~~~~f  231 (253)
                      .++.+|||+||+.|.++..+.++  ....++++|+.+.           ..+.++.++++|+.+..         ..++|
T Consensus        21 k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~   89 (180)
T d1ej0a_          21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALLERVGDSKV   89 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCE
T ss_pred             CCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhhhhccCcce
Confidence            57789999999999999999876  3458999998761           24567999999997743         13689


Q ss_pred             cEEEEcccccee
Q 025428          232 QLVMDKGTLDAI  243 (253)
Q Consensus       232 D~Vi~~~~l~~i  243 (253)
                      |+|++.+..+..
T Consensus        90 DlVlSD~ap~~s  101 (180)
T d1ej0a_          90 QVVMSDMAPNMS  101 (180)
T ss_dssp             EEEEECCCCCCC
T ss_pred             eEEEecccchhc
Confidence            999998876643

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.63  E-value=2.3e-05  Score=67.43  Aligned_cols=76  Identities=21%  Similarity=0.351  Sum_probs=62.5

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcC--C--CceEEEEeccCCCc--CCCCccEEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDG--F--SCIKFLVDDVLDTK--LERQFQLVM  235 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g--~--~~i~~~~~D~~~~~--~~~~fD~Vi  235 (253)
                      ...++||-||.|.|..+..++++ +..+|+++|+++++++.|++-+....  +  ++++++.+|..+.-  ..++||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            45679999999999999999997 44699999999999999999764321  1  36999999998763  247899999


Q ss_pred             Ecc
Q 025428          236 DKG  238 (253)
Q Consensus       236 ~~~  238 (253)
                      ...
T Consensus       185 ~D~  187 (312)
T d2b2ca1         185 TDS  187 (312)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            864

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.57  E-value=5.2e-05  Score=64.55  Aligned_cols=76  Identities=16%  Similarity=0.335  Sum_probs=61.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhc--CC--CceEEEEeccCCCc--C-CCCccEE
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRD--GF--SCIKFLVDDVLDTK--L-ERQFQLV  234 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~--g~--~~i~~~~~D~~~~~--~-~~~fD~V  234 (253)
                      ...++||-||.|.|..+..+.++ +..+++++|+++++++.|++-....  ..  ++++++.+|..+.-  . .++||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            45679999999999999999998 5568999999999999999965321  11  37999999987653  2 2689999


Q ss_pred             EEcc
Q 025428          235 MDKG  238 (253)
Q Consensus       235 i~~~  238 (253)
                      +...
T Consensus       159 i~D~  162 (290)
T d1xj5a_         159 IVDS  162 (290)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9754

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.55  E-value=2.5e-05  Score=64.69  Aligned_cols=71  Identities=15%  Similarity=0.219  Sum_probs=53.0

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccccce
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTLDA  242 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l~~  242 (253)
                      ...+|||||||+|.++..++++ +..+++++|+.+ .++.++      ...+++++.+|+.+. .+ ..|+++...++|.
T Consensus        81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~~------~~~r~~~~~~d~~~~-~P-~ad~~~l~~vlh~  151 (243)
T d1kyza2          81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDAP------SYPGVEHVGGDMFVS-IP-KADAVFMKWICHD  151 (243)
T ss_dssp             SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTCC------CCTTEEEEECCTTTC-CC-CCSCEECSSSSTT
T ss_pred             CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhcc------cCCceEEeccccccc-CC-CcceEEEEEEeec
Confidence            4578999999999999999998 334999999965 333222      224799999999764 33 3577888888886


Q ss_pred             e
Q 025428          243 I  243 (253)
Q Consensus       243 i  243 (253)
                      .
T Consensus       152 ~  152 (243)
T d1kyza2         152 W  152 (243)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.24  E-value=0.00025  Score=64.89  Aligned_cols=92  Identities=12%  Similarity=0.048  Sum_probs=65.4

Q ss_pred             ccccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhc----C---------------CCcEEEEeCCHHHHHHHHHHHHh
Q 025428          149 EDLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQ----G---------------FSDLTGVDYSEDAINLAQSLANR  209 (253)
Q Consensus       149 ~~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~----g---------------~~~v~gvD~s~~~l~~ar~~~~~  209 (253)
                      .++...|++++.. ..+.+|+|.+||+|.++..+.++    .               ...++|+|+++.+...|+.++..
T Consensus       150 ~~Iv~~mv~ll~~-~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~l  228 (524)
T d2ar0a1         150 RPLIKTIIHLLKP-QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL  228 (524)
T ss_dssp             HHHHHHHHHHHCC-CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred             cchhHhhhhcccC-ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHHh
Confidence            3555566665544 56779999999999999877653    1               11589999999999999998876


Q ss_pred             cCCC-----ceEEEEeccCCCcC--CCCccEEEEccccc
Q 025428          210 DGFS-----CIKFLVDDVLDTKL--ERQFQLVMDKGTLD  241 (253)
Q Consensus       210 ~g~~-----~i~~~~~D~~~~~~--~~~fD~Vi~~~~l~  241 (253)
                      .+..     .-.+..++......  ..+||+|++|..+.
T Consensus       229 ~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg  267 (524)
T d2ar0a1         229 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFG  267 (524)
T ss_dssp             TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCT
T ss_pred             hcccccccccchhhhhhhhhhcccccccceeEEecCCcc
Confidence            6653     12345555544321  26899999998774

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=97.05  E-value=0.00046  Score=57.70  Aligned_cols=59  Identities=8%  Similarity=-0.064  Sum_probs=48.0

Q ss_pred             cccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC
Q 025428          150 DLKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG  211 (253)
Q Consensus       150 ~~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g  211 (253)
                      .+...++++..  .++..|||..||+|..+......|. +.+|+|++++.++.|++|+....
T Consensus       238 ~L~~rlI~~~s--~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~~~  296 (320)
T d1booa_         238 KLPEFFIRMLT--EPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLDNN  296 (320)
T ss_dssp             HHHHHHHHHHC--CTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSCSC
T ss_pred             HHHHHhhhhcc--cCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHhcc
Confidence            33444444443  4789999999999999999999976 99999999999999999876543

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=97.01  E-value=0.00062  Score=55.21  Aligned_cols=55  Identities=24%  Similarity=0.229  Sum_probs=45.8

Q ss_pred             ccchHHHHhccCCCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH
Q 025428          151 LKSEPVEENDKYLSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN  208 (253)
Q Consensus       151 ~~~~l~~~l~~~~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~  208 (253)
                      +...++++..  .++..|||..||+|..+....+.|. +.+|+|++++-++.|++|+.
T Consensus       201 L~~~lI~~~s--~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         201 LIERIIRASS--NPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             HHHHHHHHHC--CTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--CCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence            3334444443  4788999999999999999999965 99999999999999999975

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.98  E-value=0.00074  Score=57.92  Aligned_cols=59  Identities=15%  Similarity=0.131  Sum_probs=50.2

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCC
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDT  225 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~  225 (253)
                      .+..|||||.|.|.++..|... +..+++++|+++..++..+++...   .+++++++|+..+
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~---~~~~ii~~D~l~~  102 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG---SPLQILKRDPYDW  102 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT---SSCEEECSCTTCH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC---CCcEEEeCchhhc
Confidence            5678999999999999999987 456899999999999998887542   4789999998754

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.68  E-value=0.0016  Score=53.28  Aligned_cols=47  Identities=17%  Similarity=0.056  Sum_probs=43.0

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRD  210 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~  210 (253)
                      .++..|||..||+|..+......|. +.+|+|+++..++.|++|+...
T Consensus       206 ~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~~  252 (279)
T d1eg2a_         206 HPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFL  252 (279)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC
T ss_pred             CCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHHh
Confidence            4788999999999999999999965 9999999999999999998753

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=96.50  E-value=0.00071  Score=55.43  Aligned_cols=71  Identities=18%  Similarity=0.253  Sum_probs=49.2

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhc----C-CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----CCCcc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQ----G-FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----ERQFQ  232 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~----g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----~~~fD  232 (253)
                      .+.++||+||++.|.-+..++..    + ..+++|+|+++.......     ....+++++++|..+...     ...+|
T Consensus        79 ~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~~~~I~~i~gDs~~~~~~~~l~~~~~d  153 (232)
T d2bm8a1          79 LRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENITLHQGDCSDLTTFEHLREMAHP  153 (232)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEEEEECCSSCSGGGGGGSSSCSS
T ss_pred             hCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----ccccceeeeecccccHHHHHHHHhcCCC
Confidence            35679999999999887766642    2 348999999875433221     223579999999876532     24678


Q ss_pred             EEEEcc
Q 025428          233 LVMDKG  238 (253)
Q Consensus       233 ~Vi~~~  238 (253)
                      +|+..+
T Consensus       154 lIfID~  159 (232)
T d2bm8a1         154 LIFIDN  159 (232)
T ss_dssp             EEEEES
T ss_pred             EEEEcC
Confidence            877654

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=96.40  E-value=0.0086  Score=49.70  Aligned_cols=71  Identities=14%  Similarity=0.209  Sum_probs=57.1

Q ss_pred             EEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEEcccccee
Q 025428          167 SVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTLDAI  243 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~~~~l~~i  243 (253)
                      +|||+.||.|.+..-|-..|+..+.++|+++.+++.-+.|.      .-.++++|+.++...  ...|+++......-+
T Consensus         2 k~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~------~~~~~~~Di~~~~~~~~~~~dll~~g~PCq~f   74 (324)
T d1dcta_           2 NLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNH------SAKLIKGDISKISSDEFPKCDGIIGGPPCQSW   74 (324)
T ss_dssp             EEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHC------CSEEEESCTTTSCGGGSCCCSEEEECCCCTTT
T ss_pred             eEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHC------CCCCccCChhhCCHhHcccccEEeeccccccc
Confidence            69999999999999988889977779999999998887764      235788999998643  568988876555544

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=96.29  E-value=0.0011  Score=54.74  Aligned_cols=77  Identities=19%  Similarity=0.162  Sum_probs=58.9

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhcC-----------------------------------------CCcEEEEeCCHHHHHH
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQG-----------------------------------------FSDLTGVDYSEDAINL  202 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~g-----------------------------------------~~~v~gvD~s~~~l~~  202 (253)
                      .+..+||..||+|++++..+-..                                         ...++|.|+++.+++.
T Consensus        50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~  129 (249)
T d1o9ga_          50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA  129 (249)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence            44579999999999988776521                                         0146799999999999


Q ss_pred             H---HHHHHhcCCCc-eEEEEeccCCCcC------CCCccEEEEcccc
Q 025428          203 A---QSLANRDGFSC-IKFLVDDVLDTKL------ERQFQLVMDKGTL  240 (253)
Q Consensus       203 a---r~~~~~~g~~~-i~~~~~D~~~~~~------~~~fD~Vi~~~~l  240 (253)
                      |   ++|++..|+.. |.+.+.|+.+...      +...++|++|...
T Consensus       130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPY  177 (249)
T d1o9ga_         130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPY  177 (249)
T ss_dssp             HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCG
T ss_pred             HHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCc
Confidence            8   46888888874 9999999977542      3567899987654

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=95.84  E-value=0.0034  Score=52.80  Aligned_cols=74  Identities=12%  Similarity=0.071  Sum_probs=57.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC--CCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE--RQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~--~~fD~Vi~~~~l  240 (253)
                      ..+.+|||+.||.|.+...|-..|+.-+.++|+++.+++.-+.|..     +  ..++|+.++...  ..+|+++.....
T Consensus         9 ~~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~-----~--~~~~Di~~~~~~~~~~~Dll~ggpPC   81 (327)
T d2c7pa1           9 LTGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFG-----E--KPEGDITQVNEKTIPDHDILCAGFPC   81 (327)
T ss_dssp             TTTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHS-----C--CCBSCGGGSCGGGSCCCSEEEEECCC
T ss_pred             CCCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCC-----C--CCcCchhcCchhhcceeeeeeccccc
Confidence            3567999999999999999988899777889999999999888753     1  125788877543  568998875544


Q ss_pred             cee
Q 025428          241 DAI  243 (253)
Q Consensus       241 ~~i  243 (253)
                      .-+
T Consensus        82 q~f   84 (327)
T d2c7pa1          82 QAF   84 (327)
T ss_dssp             TTT
T ss_pred             chh
Confidence            433

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=95.28  E-value=0.003  Score=52.03  Aligned_cols=75  Identities=9%  Similarity=0.038  Sum_probs=44.4

Q ss_pred             CCCCEEEEEcCCCcHHHHHHHhcC-CCcEEEEeCCHHHHHHHHHHHHhcCCCc-eEEEEeccCCCcCCCCccEEEEccc
Q 025428          163 LSSWSVLDIGTGNGLLLQELSKQG-FSDLTGVDYSEDAINLAQSLANRDGFSC-IKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~~~~~la~~g-~~~v~gvD~s~~~l~~ar~~~~~~g~~~-i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      .+..+|+|+|||.|.++..++.+. ...|.|+++--..-+ .-...+..+. + +++...+-.....+...|+|+|...
T Consensus        65 ~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e-~P~~~~~~~~-ni~~~~~~~dv~~l~~~~~D~vlcDm~  141 (257)
T d2p41a1          65 TPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE-EPIPMSTYGW-NLVRLQSGVDVFFIPPERCDTLLCDIG  141 (257)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC-CCCCCCSTTG-GGEEEECSCCTTTSCCCCCSEEEECCC
T ss_pred             cCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc-CCcccccccc-ccccchhhhhHHhcCCCcCCEEEeeCC
Confidence            566799999999999999999873 236778777321000 0000011111 3 4454443333324578999999753

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.20  E-value=0.015  Score=45.61  Aligned_cols=46  Identities=17%  Similarity=0.135  Sum_probs=38.4

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      ...++.+||-+|||. |.++..+++. |+.+|+++|.+++.++.|++.
T Consensus        22 ~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~   69 (195)
T d1kola2          22 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQ   69 (195)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhc
Confidence            346889999999997 6677777765 777999999999999998874

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=95.05  E-value=0.016  Score=44.53  Aligned_cols=45  Identities=20%  Similarity=0.319  Sum_probs=37.7

Q ss_pred             CCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       162 ~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      ..++.+||-+||| .|.++..+++. |+.+|+++|.+++.++.+++.
T Consensus        26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~l   72 (182)
T d1vj0a2          26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEI   72 (182)
T ss_dssp             CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccchhheecccccccccccccccccccccccccc
Confidence            3578899999998 47778888877 776899999999999988764

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=94.38  E-value=0.033  Score=42.64  Aligned_cols=46  Identities=26%  Similarity=0.245  Sum_probs=39.0

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      +..++.+||=+|||. |.++..+++. |+.+|+++|.+++-++.+++.
T Consensus        24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~l   71 (174)
T d1jqba2          24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFY   71 (174)
T ss_dssp             TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHH
T ss_pred             CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhh
Confidence            346788999999986 8888888887 777899999999999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.36  E-value=0.02  Score=43.50  Aligned_cols=44  Identities=20%  Similarity=0.084  Sum_probs=37.4

Q ss_pred             CCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       162 ~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      ..++.+||-+|+| .|.++..+++. |+ +|+++|.|++.++.+++.
T Consensus        25 ~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~l   70 (168)
T d1piwa2          25 CGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKM   70 (168)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHH
T ss_pred             cCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhcc
Confidence            3678899999998 77888888876 76 899999999999988875

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.32  E-value=0.028  Score=46.84  Aligned_cols=73  Identities=15%  Similarity=0.215  Sum_probs=53.8

Q ss_pred             CEEEEEcCCCcHHHHHHHhcCCC--cEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC----CCccEEEEccc
Q 025428          166 WSVLDIGTGNGLLLQELSKQGFS--DLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE----RQFQLVMDKGT  239 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~g~~--~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~----~~fD~Vi~~~~  239 (253)
                      .+|+|+.||.|.+...|-..|+.  -+.++|+++.+++.-+.|.     ++..++++|+.++...    ..+|+++....
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~~~~~~Dll~ggpP   77 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEFDRLSFDMILMSPP   77 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHHHHHCCSEEEECCC
T ss_pred             CEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHcCCCCccEEEeecc
Confidence            47999999999999888777764  3679999999998888764     3556788898877532    36899887665


Q ss_pred             ccee
Q 025428          240 LDAI  243 (253)
Q Consensus       240 l~~i  243 (253)
                      ...+
T Consensus        78 Cq~f   81 (343)
T d1g55a_          78 CQPF   81 (343)
T ss_dssp             ----
T ss_pred             cccc
Confidence            5444

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=94.03  E-value=0.03  Score=42.98  Aligned_cols=45  Identities=24%  Similarity=0.348  Sum_probs=36.9

Q ss_pred             CCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       162 ~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      .+++.+||=+|||. |.++..+++. |+.+|+++|.+++.++.|++.
T Consensus        27 ~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          27 VKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            46788999999984 5555666665 777999999999999999986

>d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative dehydrogenase ARPG836 (MGC4172)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.12  Score=41.91  Aligned_cols=77  Identities=14%  Similarity=0.253  Sum_probs=59.6

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC----------C
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL----------E  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~----------~  228 (253)
                      .+++.+|=.|++.|.   ++..|++.|+ +|+.++.+++.++.+.+.++..+.. ++.++++|+.+..-          .
T Consensus         8 lk~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~   86 (257)
T d1xg5a_           8 WRDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQ   86 (257)
T ss_dssp             GTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHh
Confidence            367899999988776   4566667788 8999999999999988888777654 58899999987530          1


Q ss_pred             -CCccEEEEcccc
Q 025428          229 -RQFQLVMDKGTL  240 (253)
Q Consensus       229 -~~fD~Vi~~~~l  240 (253)
                       +..|+++.+.-.
T Consensus        87 ~g~iD~lVnnAg~   99 (257)
T d1xg5a_          87 HSGVDICINNAGL   99 (257)
T ss_dssp             HCCCSEEEECCCC
T ss_pred             cCCCCEEEecccc
Confidence             578988876533

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=93.70  E-value=0.084  Score=38.10  Aligned_cols=61  Identities=18%  Similarity=0.210  Sum_probs=43.6

Q ss_pred             EEEEEcCCCcHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----C-CCccEEEE
Q 025428          167 SVLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----E-RQFQLVMD  236 (253)
Q Consensus       167 ~VLDiGcGtG~~~~~la~----~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~-~~fD~Vi~  236 (253)
                      +|+=+|+  |.++..+++    .|. .|+.+|.+++.++.+++..      ++.+++||..+...    . ...|.+++
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~------~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI------DALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC------SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh------hhhhccCcccchhhhhhcChhhhhhhcc
Confidence            4566665  666666654    365 8999999999998776541      46789999987642    2 56788776

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=93.69  E-value=0.036  Score=42.51  Aligned_cols=46  Identities=24%  Similarity=0.233  Sum_probs=39.1

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      +..++.+||=+|||. |.++..+++. |+..|+.+|.+++-++.|++.
T Consensus        25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~   72 (174)
T d1e3ia2          25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKAL   72 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHh
Confidence            346788999999997 8888888887 777899999999988888874

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=93.55  E-value=0.16  Score=41.13  Aligned_cols=74  Identities=16%  Similarity=0.293  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--  228 (253)
                      .+++++|=-|.+.|.   ++..|++.|+ +|+.+|.+++.++.+.+.++..|. ++.++.+|+.+...         .  
T Consensus         3 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (260)
T d1zema1           3 FNGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGV-EARSYVCDVTSEEAVIGTVDSVVRDF   80 (260)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTS-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            367899988887765   5677777887 899999999999999888877664 78899999987530         1  


Q ss_pred             CCccEEEEcc
Q 025428          229 RQFQLVMDKG  238 (253)
Q Consensus       229 ~~fD~Vi~~~  238 (253)
                      +..|+++.+.
T Consensus        81 g~iDilVnna   90 (260)
T d1zema1          81 GKIDFLFNNA   90 (260)
T ss_dssp             SCCCEEEECC
T ss_pred             CCCCeehhhh
Confidence            5789888764

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=93.17  E-value=0.2  Score=40.44  Aligned_cols=77  Identities=16%  Similarity=0.305  Sum_probs=59.5

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc------------C
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------------L  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~------------~  227 (253)
                      .+++++|=.|+..|.   ++..|++.|+ +|+.++.+++-++.+.+.+...+. ++.++.+|+.+..            +
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~-~~~~~~~D~s~~~~~~~~~~~~~~~~   81 (258)
T d1ae1a_           4 LKGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGL-NVEGSVCDLLSRTERDKLMQTVAHVF   81 (258)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CceEEEeecCCHHHHHHHHHHHHHHh
Confidence            378899999988763   5667777788 999999999999998888877764 7888899997753            1


Q ss_pred             CCCccEEEEccccc
Q 025428          228 ERQFQLVMDKGTLD  241 (253)
Q Consensus       228 ~~~fD~Vi~~~~l~  241 (253)
                      .+..|+++.+.-++
T Consensus        82 ~g~idilinnag~~   95 (258)
T d1ae1a_          82 DGKLNILVNNAGVV   95 (258)
T ss_dssp             TSCCCEEEECCCCC
T ss_pred             CCCcEEEecccccc
Confidence            25678888765443

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=93.02  E-value=0.15  Score=43.55  Aligned_cols=78  Identities=17%  Similarity=0.303  Sum_probs=53.4

Q ss_pred             CCCEEEEEcCCCcHHHHHHHhc-C-------CCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEE
Q 025428          164 SSWSVLDIGTGNGLLLQELSKQ-G-------FSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVM  235 (253)
Q Consensus       164 ~~~~VLDiGcGtG~~~~~la~~-g-------~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi  235 (253)
                      +..+|+++|+|+|.++.-+.+. .       ..+++-+|.|+.+.+.-+++++  ...++.+. .++...+  ...-+|+
T Consensus        79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~--~~~~i~w~-~~~~~~~--~~~g~ii  153 (365)
T d1zkda1          79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA--GIRNIHWH-DSFEDVP--EGPAVIL  153 (365)
T ss_dssp             SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST--TCSSEEEE-SSGGGSC--CSSEEEE
T ss_pred             ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhc--ccccceec-cChhhcc--cCCeEEE
Confidence            4458999999999998766543 1       1258899999987776666654  23356554 3444332  2336899


Q ss_pred             EccccceeccC
Q 025428          236 DKGTLDAIGLH  246 (253)
Q Consensus       236 ~~~~l~~i~~~  246 (253)
                      +|..|++++++
T Consensus       154 aNE~fDAlPv~  164 (365)
T d1zkda1         154 ANEYFDVLPIH  164 (365)
T ss_dssp             EESSGGGSCCE
T ss_pred             ecccCccccce
Confidence            99999998764

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.85  E-value=0.092  Score=39.53  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=35.5

Q ss_pred             CCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       162 ~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      ..++.+||=+|||. |.++..+++. |+.+|+++|.+++-++.|++.
T Consensus        24 ~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~   70 (171)
T d1pl8a2          24 VTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEI   70 (171)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHh
Confidence            35788999999974 4555556655 777899999999999988864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=92.70  E-value=0.1  Score=39.09  Aligned_cols=44  Identities=25%  Similarity=0.222  Sum_probs=36.8

Q ss_pred             CCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       162 ~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      .+++.+||-+||| .|.++..+++. |+ +|+++|.+++-++.|++.
T Consensus        24 ~~~g~~vlV~G~G~vG~~~~~~ak~~Ga-~vi~v~~~~~r~~~a~~~   69 (170)
T d1e3ja2          24 VQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNC   69 (170)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEEcccccchhhHhhHhhhcc-cccccchHHHHHHHHHHc
Confidence            3678899999998 67777777777 65 999999999999999874

>d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein R05D8.7
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.58  E-value=0.19  Score=40.81  Aligned_cols=75  Identities=17%  Similarity=0.305  Sum_probs=58.3

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCcC----------
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL----------  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~~----------  227 (253)
                      .+++++|=.|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+...+..  ++.++.+|+.+...          
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~   81 (272)
T d1xkqa_           3 FSNKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLK   81 (272)
T ss_dssp             TTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHH
Confidence            367888888877763   4667777787 8999999999999999888776653  58899999987531          


Q ss_pred             C-CCccEEEEcc
Q 025428          228 E-RQFQLVMDKG  238 (253)
Q Consensus       228 ~-~~fD~Vi~~~  238 (253)
                      . +..|+++.+.
T Consensus        82 ~~g~iDilvnnA   93 (272)
T d1xkqa_          82 QFGKIDVLVNNA   93 (272)
T ss_dssp             HHSCCCEEEECC
T ss_pred             HhCCceEEEeCC
Confidence            1 5789888764

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=92.57  E-value=0.067  Score=40.80  Aligned_cols=46  Identities=26%  Similarity=0.247  Sum_probs=36.5

Q ss_pred             cCCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      +.+++.+||=+|||. |.++..+++. |+.+|+++|.+++-++.+++.
T Consensus        24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~l   71 (174)
T d1p0fa2          24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIEL   71 (174)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHc
Confidence            346889999999984 4455556655 888999999999999999874

>d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 17-beta-hydroxysteroid dehydrogenase type XI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.55  E-value=0.3  Score=39.10  Aligned_cols=77  Identities=16%  Similarity=0.169  Sum_probs=60.2

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~  228 (253)
                      ..++.+|=-|++.|.   ++..|+++|+ +|+.+|.+++.++...+.+...+. ++.++.+|+.+...           -
T Consensus         5 l~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dvs~~~~v~~~~~~i~~~~   82 (244)
T d1yb1a_           5 VTGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGA-KVHTFVVDCSNREDIYSSAKKVKAEI   82 (244)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            467888888888876   5677777888 899999999999988888877663 78999999988631           2


Q ss_pred             CCccEEEEccccc
Q 025428          229 RQFQLVMDKGTLD  241 (253)
Q Consensus       229 ~~fD~Vi~~~~l~  241 (253)
                      +..|+++.+.-+.
T Consensus        83 g~idilinnag~~   95 (244)
T d1yb1a_          83 GDVSILVNNAGVV   95 (244)
T ss_dssp             CCCSEEEECCCCC
T ss_pred             CCCceeEeecccc
Confidence            5688888766544

>d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein F25D1.5
species: Caenorhabditis elegans [TaxId: 6239]

Probab=92.11  E-value=0.25  Score=40.13  Aligned_cols=75  Identities=21%  Similarity=0.304  Sum_probs=58.7

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCcC----------C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL----------E  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~~----------~  228 (253)
                      +++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+...+..  ++.++++|+.+...          .
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~   81 (274)
T d1xhla_           3 SGKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAK   81 (274)
T ss_dssp             TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHH
Confidence            67888888887774   4667777787 8999999999999998888777653  58999999987531          1


Q ss_pred             -CCccEEEEccc
Q 025428          229 -RQFQLVMDKGT  239 (253)
Q Consensus       229 -~~fD~Vi~~~~  239 (253)
                       +..|+++.+.-
T Consensus        82 ~G~iDilVnnAG   93 (274)
T d1xhla_          82 FGKIDILVNNAG   93 (274)
T ss_dssp             HSCCCEEEECCC
T ss_pred             cCCceEEEeecc
Confidence             57899887653

>d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), II [TaxId: 4076]

Probab=92.03  E-value=0.32  Score=39.13  Aligned_cols=76  Identities=16%  Similarity=0.314  Sum_probs=58.4

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc------------C
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------------L  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~------------~  227 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+...+. ++.++.+|+.+..            +
T Consensus         6 L~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d2ae2a_           6 LEGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGF-KVEASVCDLSSRSERQELMNTVANHF   83 (259)
T ss_dssp             CTTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-EEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-CceEEEeeCCCHHHHHHHHHHHHHHh
Confidence            478899988887764   4667777787 899999999999988888877664 7888999997742            1


Q ss_pred             CCCccEEEEcccc
Q 025428          228 ERQFQLVMDKGTL  240 (253)
Q Consensus       228 ~~~fD~Vi~~~~l  240 (253)
                      ..+.|+++.+.-+
T Consensus        84 ~~~idilvnnAG~   96 (259)
T d2ae2a_          84 HGKLNILVNNAGI   96 (259)
T ss_dssp             TTCCCEEEECCCC
T ss_pred             CCCceEEEECCce
Confidence            2468988876543

>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.87  E-value=0.28  Score=39.57  Aligned_cols=76  Identities=18%  Similarity=0.220  Sum_probs=59.2

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc------------C
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------------L  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~------------~  227 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+...+. ++.++.+|+.+..            +
T Consensus         6 LkgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~-~~~~~~~Dv~~~~~v~~~~~~~~~~~   83 (259)
T d1xq1a_           6 LKAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGF-QVTGSVCDASLRPEREKLMQTVSSMF   83 (259)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-ceEEEeccCCCHHHHHHHHHHHHHHh
Confidence            378899999988775   5677777888 899999999999988888776654 7899999997642            1


Q ss_pred             CCCccEEEEcccc
Q 025428          228 ERQFQLVMDKGTL  240 (253)
Q Consensus       228 ~~~fD~Vi~~~~l  240 (253)
                      .+..|+++.+.-.
T Consensus        84 ~g~idilvnnAG~   96 (259)
T d1xq1a_          84 GGKLDILINNLGA   96 (259)
T ss_dssp             TTCCSEEEEECCC
T ss_pred             CCCcccccccccc
Confidence            3568888876543

>d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.83  E-value=0.28  Score=39.30  Aligned_cols=77  Identities=12%  Similarity=0.174  Sum_probs=57.2

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~  228 (253)
                      ..++.+|=.|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.++..+. ++.++++|+.+..-           -
T Consensus         8 lenKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~~   85 (251)
T d2c07a1           8 GENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGY-ESSGYAGDVSKKEEISEVINKILTEH   85 (251)
T ss_dssp             CSSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTC-CEEEEECCTTCHHHHHHHHHHHHHHC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHhc
Confidence            367788888876663   3455555677 899999999999998888877664 78899999987520           1


Q ss_pred             CCccEEEEccccc
Q 025428          229 RQFQLVMDKGTLD  241 (253)
Q Consensus       229 ~~fD~Vi~~~~l~  241 (253)
                      +..|+++.+....
T Consensus        86 g~iDilvnnag~~   98 (251)
T d2c07a1          86 KNVDILVNNAGIT   98 (251)
T ss_dssp             SCCCEEEECCCCC
T ss_pred             CCceeeeeccccc
Confidence            6789888766443

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=91.77  E-value=0.21  Score=43.23  Aligned_cols=51  Identities=18%  Similarity=0.130  Sum_probs=42.6

Q ss_pred             CCCCCEEEEEcCCCcHHHHHHHhc---CCCcEEEEeCCHHHHHHHHHHHHhcCC
Q 025428          162 YLSSWSVLDIGTGNGLLLQELSKQ---GFSDLTGVDYSEDAINLAQSLANRDGF  212 (253)
Q Consensus       162 ~~~~~~VLDiGcGtG~~~~~la~~---g~~~v~gvD~s~~~l~~ar~~~~~~g~  212 (253)
                      ..++..++|||+-.|..+..++..   ...+|+++|.++...+..+++++.+..
T Consensus       210 l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~  263 (395)
T d2py6a1         210 FSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTD  263 (395)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTT
T ss_pred             cCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhccc
Confidence            356789999999999998877654   235899999999999999999887654

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=91.76  E-value=0.25  Score=37.85  Aligned_cols=75  Identities=11%  Similarity=0.077  Sum_probs=52.7

Q ss_pred             cCCCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----CCCCccE
Q 025428          161 KYLSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQL  233 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----~~~~fD~  233 (253)
                      ...++++||=.|++.|.   ++..|+++|+ +|+.++.+++.++...+.+....  ++.+...|+.+..    .-+..|+
T Consensus        19 ~~l~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~iDi   95 (191)
T d1luaa1          19 GSVKGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRF--KVNVTAAETADDASRAEAVKGAHF   95 (191)
T ss_dssp             SCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHH--TCCCEEEECCSHHHHHHHTTTCSE
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhcc--chhhhhhhcccHHHHHHHhcCcCe
Confidence            33688999999976554   3556667787 89999999999988877765432  4456666665542    1256888


Q ss_pred             EEEcc
Q 025428          234 VMDKG  238 (253)
Q Consensus       234 Vi~~~  238 (253)
                      ++.+.
T Consensus        96 lin~A  100 (191)
T d1luaa1          96 VFTAG  100 (191)
T ss_dssp             EEECC
T ss_pred             eeecC
Confidence            88764

>d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase (5l265)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=91.71  E-value=0.3  Score=39.36  Aligned_cols=75  Identities=13%  Similarity=0.214  Sum_probs=57.0

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC--ceEEEEeccCCCcC----------C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS--CIKFLVDDVLDTKL----------E  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~--~i~~~~~D~~~~~~----------~  228 (253)
                      +++.+|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+...+..  ++.++++|+.+...          .
T Consensus         4 ~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (264)
T d1spxa_           4 AEKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGK   82 (264)
T ss_dssp             TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHH
Confidence            67788888877665   3566667787 8999999999999988888776653  58999999977531          1


Q ss_pred             -CCccEEEEccc
Q 025428          229 -RQFQLVMDKGT  239 (253)
Q Consensus       229 -~~fD~Vi~~~~  239 (253)
                       +..|+++.+.-
T Consensus        83 ~g~iDilvnnAG   94 (264)
T d1spxa_          83 FGKLDILVNNAG   94 (264)
T ss_dssp             HSCCCEEEECCC
T ss_pred             hCCCCEeecccc
Confidence             57898887653

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=91.67  E-value=0.21  Score=37.51  Aligned_cols=45  Identities=24%  Similarity=0.337  Sum_probs=35.3

Q ss_pred             CCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       162 ~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      ..++.+||-+|+|. |.++..+++. |+..|+++|.+++-++.+++.
T Consensus        30 ~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~   76 (172)
T d1h2ba2          30 LYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERL   76 (172)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHT
T ss_pred             cCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhc
Confidence            46788999999985 4445666654 877999999999988888864

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=91.62  E-value=0.28  Score=39.91  Aligned_cols=77  Identities=14%  Similarity=0.123  Sum_probs=55.9

Q ss_pred             CCCCEEEEEcCCCc---HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG---~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~  228 (253)
                      .+++++|=-|++.|   .++..|++.|+ +|+.+|.+++.++.+.+.+....-.++.++.+|+.+..-           .
T Consensus        23 l~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~  101 (294)
T d1w6ua_          23 FQGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVA  101 (294)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhc
Confidence            57889999998777   35666677787 999999999888777665543322368889999977531           2


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-.
T Consensus       102 g~iDilvnnAg~  113 (294)
T d1w6ua_         102 GHPNIVINNAAG  113 (294)
T ss_dssp             CSCSEEEECCCC
T ss_pred             cccchhhhhhhh
Confidence            578888876543

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.43  E-value=0.4  Score=38.17  Aligned_cols=72  Identities=21%  Similarity=0.276  Sum_probs=54.0

Q ss_pred             CCCCEEEEEcCCCc---HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----CC--CCcc
Q 025428          163 LSSWSVLDIGTGNG---LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LE--RQFQ  232 (253)
Q Consensus       163 ~~~~~VLDiGcGtG---~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~~--~~fD  232 (253)
                      .+++++|=.|++.|   .++..|++.|+ +|+.+|.+++.++...+..     .++..++.|+.+..     +.  ++.|
T Consensus         5 L~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~d~~~v~~~~~~~g~iD   78 (244)
T d1pr9a_           5 LAGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC-----PGIEPVCVDLGDWEATERALGSVGPVD   78 (244)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCC
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHhCCce
Confidence            47889999998877   35677777888 8999999998887665542     35788889987753     12  6789


Q ss_pred             EEEEcccc
Q 025428          233 LVMDKGTL  240 (253)
Q Consensus       233 ~Vi~~~~l  240 (253)
                      +++.+.-.
T Consensus        79 ilVnnAg~   86 (244)
T d1pr9a_          79 LLVNNAAV   86 (244)
T ss_dssp             EEEECCCC
T ss_pred             EEEecccc
Confidence            88876644

>d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 7-alpha-hydroxysteroid dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=91.42  E-value=0.32  Score=39.08  Aligned_cols=76  Identities=14%  Similarity=0.147  Sum_probs=56.7

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------C-
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------E-  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------~-  228 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.++..|. ++.++++|+.+...          . 
T Consensus         9 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~-~~~~~~~Dvs~~~~~~~~~~~~~~~~   86 (255)
T d1fmca_           9 LDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFAISKL   86 (255)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCC-cEEEEEccCCCHHHHHHHHHHHHHHc
Confidence            367888877766554   3455666677 899999999999988888877664 78889999987521          1 


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-.
T Consensus        87 g~iDilvnnAG~   98 (255)
T d1fmca_          87 GKVDILVNNAGG   98 (255)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCCCEeeeCCcC
Confidence            578988876543

>d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Rhizome secoisolariciresinol dehydrogenase
species: Mayapple (Podophyllum peltatum) [TaxId: 35933]

Probab=91.26  E-value=0.33  Score=39.14  Aligned_cols=75  Identities=13%  Similarity=0.183  Sum_probs=55.5

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C----C--
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L----E--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~----~--  228 (253)
                      .+++.+|=.|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+...+  ++.++++|+.+..     +    .  
T Consensus         4 L~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (268)
T d2bgka1           4 LQDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPD--VISFVHCDVTKDEDVRNLVDTTIAKH   80 (268)
T ss_dssp             TTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTT--TEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCC--ceEEEEccCCCHHHHHHHHHHHHHHc
Confidence            478899999987775   3556667787 89999999998888777664432  5788999997752     1    1  


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-.
T Consensus        81 g~iD~lVnnAG~   92 (268)
T d2bgka1          81 GKLDIMFGNVGV   92 (268)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcceecccccc
Confidence            578998876544

>d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Levodione reductase
species: Corynebacterium aquaticum [TaxId: 144185]

Probab=90.86  E-value=0.5  Score=37.95  Aligned_cols=75  Identities=21%  Similarity=0.249  Sum_probs=57.8

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEEeccCCCcC----------C-
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFS-CIKFLVDDVLDTKL----------E-  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~-~i~~~~~D~~~~~~----------~-  228 (253)
                      +++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+...+.. ++.++++|+.+...          . 
T Consensus         3 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~   81 (258)
T d1iy8a_           3 TDRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERF   81 (258)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHh
Confidence            67889989988775   5777888887 8999999999998887776554433 68889999987531          1 


Q ss_pred             CCccEEEEccc
Q 025428          229 RQFQLVMDKGT  239 (253)
Q Consensus       229 ~~fD~Vi~~~~  239 (253)
                      +..|+++.+.-
T Consensus        82 G~iDiLVnnAG   92 (258)
T d1iy8a_          82 GRIDGFFNNAG   92 (258)
T ss_dssp             SCCSEEEECCC
T ss_pred             CCCCEEEECCc
Confidence            57899887754

>d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Streptomyces coelicolor [TaxId: 1902]

Probab=90.69  E-value=0.53  Score=37.60  Aligned_cols=73  Identities=15%  Similarity=0.158  Sum_probs=54.3

Q ss_pred             CCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCC
Q 025428          165 SWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQ  230 (253)
Q Consensus       165 ~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~  230 (253)
                      ++.+|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.++..+. ++.++.+|+.+...           -++
T Consensus         2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~-~~~~~~~Dvs~~~~v~~~~~~~~~~~g~   79 (257)
T d2rhca1           2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGV-EADGRTCDVRSVPEIEALVAAVVERYGP   79 (257)
T ss_dssp             CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeecCCHHHHHHHHHHHHHHhCC
Confidence            3455666766554   4566667787 899999999999998888877664 78899999987531           157


Q ss_pred             ccEEEEccc
Q 025428          231 FQLVMDKGT  239 (253)
Q Consensus       231 fD~Vi~~~~  239 (253)
                      .|+++.+.-
T Consensus        80 iDilVnnAG   88 (257)
T d2rhca1          80 VDVLVNNAG   88 (257)
T ss_dssp             CSEEEECCC
T ss_pred             CCEEEeccc
Confidence            898887653

>d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,6,8-tetrahydroxynaphthalene reductase
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=90.35  E-value=0.4  Score=38.36  Aligned_cols=78  Identities=19%  Similarity=0.208  Sum_probs=56.9

Q ss_pred             cCCCCCEEEEEcCCCc---HHHHHHHhcCCCcEEE-EeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----C----
Q 025428          161 KYLSSWSVLDIGTGNG---LLLQELSKQGFSDLTG-VDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----L----  227 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG---~~~~~la~~g~~~v~g-vD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~----  227 (253)
                      ++..++++|=.|++.|   .++..|++.|+ +|+. ...+++.++.+.+.+...|. ++.++++|+.+..     +    
T Consensus         2 ~~L~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~   79 (259)
T d1ja9a_           2 KPLAGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGA-QGVAIQADISKPSEVVALFDKAV   79 (259)
T ss_dssp             CTTTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCC-CceEecCCCCCHHHHHHHHHHHH
Confidence            3457889998886655   45666777788 6665 56788888888888887775 7889999997742     0    


Q ss_pred             -C-CCccEEEEcccc
Q 025428          228 -E-RQFQLVMDKGTL  240 (253)
Q Consensus       228 -~-~~fD~Vi~~~~l  240 (253)
                       . +..|+++.+.-.
T Consensus        80 ~~~g~idilinnag~   94 (259)
T d1ja9a_          80 SHFGGLDFVMSNSGM   94 (259)
T ss_dssp             HHHSCEEEEECCCCC
T ss_pred             HHcCCCcEEEecccc
Confidence             1 568888876654

>d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Gluconate 5-dehydrogenase
species: Thermotoga maritima [TaxId: 2336]

Probab=90.02  E-value=0.52  Score=37.66  Aligned_cols=76  Identities=20%  Similarity=0.232  Sum_probs=56.2

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHH-HhcCCCceEEEEeccCCCc-----C----C-
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLA-NRDGFSCIKFLVDDVLDTK-----L----E-  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~-~~~g~~~i~~~~~D~~~~~-----~----~-  228 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+ +..+. ++.++.+|+.+..     +    . 
T Consensus         3 l~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~   80 (251)
T d1vl8a_           3 LRGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGV-ETMAFRCDVSNYEEVKKLLEAVKEK   80 (251)
T ss_dssp             CTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCC-cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            367899999988774   5677777888 8999999998887766554 34453 6888999998753     1    1 


Q ss_pred             -CCccEEEEcccc
Q 025428          229 -RQFQLVMDKGTL  240 (253)
Q Consensus       229 -~~fD~Vi~~~~l  240 (253)
                       +..|+++.+.-+
T Consensus        81 ~g~iDiLVnnAG~   93 (251)
T d1vl8a_          81 FGKLDTVVNAAGI   93 (251)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             cCCCCEEEECCCC
Confidence             578998876543

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=89.90  E-value=0.31  Score=36.64  Aligned_cols=69  Identities=23%  Similarity=0.314  Sum_probs=45.9

Q ss_pred             CCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc------CCCCccE
Q 025428          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK------LERQFQL  233 (253)
Q Consensus       162 ~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~------~~~~fD~  233 (253)
                      ..++.+||=+|||. |.++..+++. |...++.+|.+++-++.+++.    |..  +++..+-.+..      .++.||+
T Consensus        26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~----Ga~--~~i~~~~~~~~~~i~~~t~gg~D~   99 (174)
T d1f8fa2          26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQL----GAT--HVINSKTQDPVAAIKEITDGGVNF   99 (174)
T ss_dssp             CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHH----TCS--EEEETTTSCHHHHHHHHTTSCEEE
T ss_pred             CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHc----CCe--EEEeCCCcCHHHHHHHHcCCCCcE
Confidence            46788999999974 4455666655 887889999999999988875    432  23332222211      1356898


Q ss_pred             EEE
Q 025428          234 VMD  236 (253)
Q Consensus       234 Vi~  236 (253)
                      |+.
T Consensus       100 vid  102 (174)
T d1f8fa2         100 ALE  102 (174)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            885

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=89.70  E-value=0.31  Score=36.09  Aligned_cols=44  Identities=20%  Similarity=0.326  Sum_probs=35.6

Q ss_pred             CCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          162 YLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       162 ~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      .+++.+||=+|+| .|.++..+++. |. +|+++|.+++.++.+++.
T Consensus        25 ~~~g~~VlV~GaG~vG~~~~~~ak~~G~-~Vi~~~~~~~~~~~a~~~   70 (166)
T d1llua2          25 ARPGQWVAISGIGGLGHVAVQYARAMGL-HVAAIDIDDAKLELARKL   70 (166)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHT
T ss_pred             CCCCCEEEEeeccccHHHHHHHHHHcCC-ccceecchhhHHHhhhcc
Confidence            4678899999997 56677777776 64 999999999999988764

>d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: L-alanine dehydrogenase
species: Phormidium lapideum [TaxId: 32060]

Probab=89.61  E-value=0.2  Score=38.19  Aligned_cols=68  Identities=13%  Similarity=0.233  Sum_probs=48.5

Q ss_pred             CCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCC-CCccEEEE
Q 025428          164 SSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLE-RQFQLVMD  236 (253)
Q Consensus       164 ~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~-~~fD~Vi~  236 (253)
                      +..+|+=||+| .|..+...+.. |+ .|+.+|.+++.++..+.....    ++++...+-..+... ...|+||.
T Consensus        31 ~pa~V~ViGaGvaG~~A~~~A~~lGA-~V~~~D~~~~~l~~l~~~~~~----~~~~~~~~~~~l~~~~~~aDivI~  101 (168)
T d1pjca1          31 KPGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS----RVELLYSNSAEIETAVAEADLLIG  101 (168)
T ss_dssp             CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG----GSEEEECCHHHHHHHHHTCSEEEE
T ss_pred             CCcEEEEECCChHHHHHHHHHhhCCC-EEEEEeCcHHHHHHHHHhhcc----cceeehhhhhhHHHhhccCcEEEE
Confidence            56799999999 57777777776 65 999999999999888776432    455555544333211 46788876

>d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: meso-2,3-butanediol dehydrogenase
species: Klebsiella pneumoniae [TaxId: 573]

Probab=89.61  E-value=0.72  Score=36.76  Aligned_cols=71  Identities=24%  Similarity=0.353  Sum_probs=52.4

Q ss_pred             EEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CCCcc
Q 025428          167 SVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ERQFQ  232 (253)
Q Consensus       167 ~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~~fD  232 (253)
                      .+|=-|++.|.   ++..|++.|+ +|+.+|.+++.++...+.+...+. ++.++++|+.+...           -++.|
T Consensus         3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD   80 (255)
T d1gega_           3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGG-HAVAVKVDVSDRDQVFAAVEQARKTLGGFD   80 (255)
T ss_dssp             EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCTTSHHHHHHHHHHHHHHTTCCC
T ss_pred             EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence            34666766554   3456666787 899999999999988888877664 78889999987531           16789


Q ss_pred             EEEEccc
Q 025428          233 LVMDKGT  239 (253)
Q Consensus       233 ~Vi~~~~  239 (253)
                      +++.+.-
T Consensus        81 ilVnnAG   87 (255)
T d1gega_          81 VIVNNAG   87 (255)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            8887653

>d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn bsu222
species: Bacillus subtilis [TaxId: 1423]

Probab=89.57  E-value=0.16  Score=36.32  Aligned_cols=59  Identities=22%  Similarity=0.331  Sum_probs=39.2

Q ss_pred             EEEEcCCCcHHHHHHHh----cCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----C-CCccEEEE
Q 025428          168 VLDIGTGNGLLLQELSK----QGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----E-RQFQLVMD  236 (253)
Q Consensus       168 VLDiGcGtG~~~~~la~----~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----~-~~fD~Vi~  236 (253)
                      ++=+|+  |.++..+++    .|. .|+.+|.+++.++.++.    .   ....+.+|..+...    . ...|.|+.
T Consensus         3 ~iIiG~--G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~----~---~~~~~~gd~~~~~~l~~a~i~~a~~vi~   70 (134)
T d2hmva1           3 FAVIGL--GRFGGSIVKELHRMGH-EVLAVDINEEKVNAYAS----Y---ATHAVIANATEENELLSLGIRNFEYVIV   70 (134)
T ss_dssp             EEEECC--SHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTT----T---CSEEEECCTTCTTHHHHHTGGGCSEEEE
T ss_pred             EEEECC--CHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHH----h---CCcceeeecccchhhhccCCccccEEEE
Confidence            444454  566655554    366 89999999999887753    2   34677899877642    2 45776664

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=89.51  E-value=0.16  Score=37.98  Aligned_cols=45  Identities=22%  Similarity=0.192  Sum_probs=35.4

Q ss_pred             cCCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      +..++.+||=+||| .|.++..+++. |+ +++++|.+++-++.+++.
T Consensus        27 ~~~~G~~VlI~GaG~vG~~a~qlak~~Ga-~~i~~~~~~~~~~~a~~l   73 (168)
T d1uufa2          27 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKAL   73 (168)
T ss_dssp             TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHH
T ss_pred             CCCCCCEEEEeccchHHHHHHHHhhcccc-cchhhccchhHHHHHhcc
Confidence            34678899999987 47777778776 66 788999999888877764

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=89.23  E-value=0.23  Score=37.06  Aligned_cols=46  Identities=28%  Similarity=0.303  Sum_probs=35.9

Q ss_pred             cCCCCCEEEEEcCC-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTG-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcG-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      +.+++.+||=.||| .|.++..+++. |+..|+++|.+++.++.+++.
T Consensus        25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~l   72 (176)
T d2fzwa2          25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEF   72 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHh
Confidence            34688899999887 44555666665 878999999999999988875

>d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 11-beta-hydroxysteroid dehydrogenase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.62  Score=37.41  Aligned_cols=79  Identities=14%  Similarity=0.221  Sum_probs=57.8

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------C
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------E  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~  228 (253)
                      .+++++|=.|++.|.   ++..|+++|+ +|+.++.+++.++.+.+......-.++.+...|..+...           .
T Consensus        12 L~GK~alITGassGIG~aiA~~la~~G~-~Vil~~r~~~~l~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~   90 (269)
T d1xu9a_          12 LQGKKVIVTGASKGIGREMAYHLAKMGA-HVVVTARSKETLQKVVSHCLELGAASAHYIAGTMEDMTFAEQFVAQAGKLM   90 (269)
T ss_dssp             GTTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHhhhhcccchhhhhhhhhHHHHHHHHHHHHHHh
Confidence            478899999988875   4666777787 999999999999988776654443467788888766421           1


Q ss_pred             CCccEEEEccccce
Q 025428          229 RQFQLVMDKGTLDA  242 (253)
Q Consensus       229 ~~fD~Vi~~~~l~~  242 (253)
                      +..|+++.+.....
T Consensus        91 g~~~~li~nag~~~  104 (269)
T d1xu9a_          91 GGLDMLILNHITNT  104 (269)
T ss_dssp             TSCSEEEECCCCCC
T ss_pred             CCcccccccccccc
Confidence            56788887665443

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=88.65  E-value=0.76  Score=36.87  Aligned_cols=76  Identities=14%  Similarity=0.179  Sum_probs=56.7

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCC-HHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS-EDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s-~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------  227 (253)
                      .+++++|=.|++.|.   ++..|++.|+ +|+.+|.+ ++.++...+.+...+. ++.++++|+.+...           
T Consensus        16 L~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~-~~~~~~~D~~~~~~v~~~~~~~~~~   93 (272)
T d1g0oa_          16 LEGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGS-DAACVKANVGVVEDIVRMFEEAVKI   93 (272)
T ss_dssp             CTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCC-ceeeEeCCCCCHHHHHHHHHHHHHH
Confidence            478899999988774   6777778888 89999986 5677777777776664 78899999987420           


Q ss_pred             CCCccEEEEcccc
Q 025428          228 ERQFQLVMDKGTL  240 (253)
Q Consensus       228 ~~~fD~Vi~~~~l  240 (253)
                      .+..|+++.+.-.
T Consensus        94 ~g~idilV~nag~  106 (272)
T d1g0oa_          94 FGKLDIVCSNSGV  106 (272)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCcccccccc
Confidence            1567888876543

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.58  E-value=0.36  Score=36.12  Aligned_cols=68  Identities=18%  Similarity=0.306  Sum_probs=47.3

Q ss_pred             cCCCCCEEEEEcC--CCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc---------CC
Q 025428          161 KYLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK---------LE  228 (253)
Q Consensus       161 ~~~~~~~VLDiGc--GtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~---------~~  228 (253)
                      ++.++.+||-.|+  |.|.++..+++. |+ +|++++.+++.++.+++    .|.+.  ++  |..+..         ..
T Consensus        25 ~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~-~vi~~~~~~~~~~~~~~----~Ga~~--vi--~~~~~~~~~~i~~~t~~   95 (174)
T d1yb5a2          25 CVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQ----NGAHE--VF--NHREVNYIDKIKKYVGE   95 (174)
T ss_dssp             CCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHH----TTCSE--EE--ETTSTTHHHHHHHHHCT
T ss_pred             CCCCCCEEEEEeccccccccccccccccCc-ccccccccccccccccc----cCccc--cc--ccccccHHHHhhhhhcc
Confidence            3467889999996  577888888887 66 89999999988887765    45533  22  222221         13


Q ss_pred             CCccEEEEc
Q 025428          229 RQFQLVMDK  237 (253)
Q Consensus       229 ~~fD~Vi~~  237 (253)
                      +.+|+|+..
T Consensus        96 ~g~d~v~d~  104 (174)
T d1yb5a2          96 KGIDIIIEM  104 (174)
T ss_dssp             TCEEEEEES
T ss_pred             CCceEEeec
Confidence            569998874

>d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: R-specific alcohol dehydrogenase
species: Lactobacillus brevis [TaxId: 1580]

Probab=88.38  E-value=0.61  Score=37.21  Aligned_cols=75  Identities=13%  Similarity=0.164  Sum_probs=55.1

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--  228 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+...  .++.++++|+.+...         .  
T Consensus         4 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (251)
T d1zk4a1           4 LDGKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTP--DQIQFFQHDSSDEDGWTKLFDATEKAF   80 (251)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCT--TTEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCC--CcEEEEEccCCCHHHHHHHHHHHHHHh
Confidence            367888888876664   4566677787 8999999999888877766432  368999999987531         1  


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-.
T Consensus        81 G~iDiLVnnAg~   92 (251)
T d1zk4a1          81 GPVSTLVNNAGI   92 (251)
T ss_dssp             SSCCEEEECCCC
T ss_pred             CCceEEEecccc
Confidence            578988876543

>d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 15-hydroxyprostaglandin dehydrogenase, PGDH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.26  E-value=0.88  Score=36.17  Aligned_cols=76  Identities=16%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC-CCceEEEEeccCCCcC----------C-
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG-FSCIKFLVDDVLDTKL----------E-  228 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g-~~~i~~~~~D~~~~~~----------~-  228 (253)
                      .++.+|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+.... -.++.++.+|+.+...          . 
T Consensus         2 ~GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~   80 (254)
T d2gdza1           2 NGKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHF   80 (254)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHc
Confidence            46788888877664   3555666687 89999999999888877765432 2368899999987531          1 


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-.
T Consensus        81 G~iDilVnnAg~   92 (254)
T d2gdza1          81 GRLDILVNNAGV   92 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCcCeecccccc
Confidence            578888876543

>d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.09  E-value=0.97  Score=35.75  Aligned_cols=71  Identities=18%  Similarity=0.270  Sum_probs=51.3

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc-----CC--CCcc
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK-----LE--RQFQ  232 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~-----~~--~~fD  232 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++-++...+..     .++..++.|+.+..     +.  ++.|
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~-----~~~~~~~~Dv~~~~~v~~~~~~~g~iD   76 (242)
T d1cyda_           3 FSGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC-----PGIEPVCVDLGDWDATEKALGGIGPVD   76 (242)
T ss_dssp             CTTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS-----TTCEEEECCTTCHHHHHHHHTTCCCCS
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEEeCCCHHHHHHHHHHcCCCe
Confidence            367899988887764   4666677787 8999999998776655432     35788889987753     12  6789


Q ss_pred             EEEEccc
Q 025428          233 LVMDKGT  239 (253)
Q Consensus       233 ~Vi~~~~  239 (253)
                      +++.+.-
T Consensus        77 ilVnnAg   83 (242)
T d1cyda_          77 LLVNNAA   83 (242)
T ss_dssp             EEEECCC
T ss_pred             EEEECCc
Confidence            8887653

>d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Putative oxidoreductase Rv2002
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.50  E-value=1  Score=35.70  Aligned_cols=73  Identities=11%  Similarity=0.178  Sum_probs=54.5

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--  228 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++...+.+.    .++.++++|+.+...         .  
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~   78 (244)
T d1nffa_           4 LTGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA----DAARYVHLDVTQPAQWKAAVDTAVTAF   78 (244)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG----GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh----CcceEEEeecCCHHHHHHHHHHHHHHh
Confidence            477899999988774   5677777888 89999999988877666542    367889999987531         1  


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-.
T Consensus        79 g~idilinnAG~   90 (244)
T d1nffa_          79 GGLHVLVNNAGI   90 (244)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCeEEEECCcc
Confidence            568988876543

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=87.37  E-value=0.34  Score=36.15  Aligned_cols=46  Identities=20%  Similarity=0.141  Sum_probs=34.9

Q ss_pred             cCCCCCEEEEEcCCCcHHH-HHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGNGLLL-QELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~~~-~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      +.+++.+||=+|+|.+.++ ..+++. +...|+++|.+++-++.+++.
T Consensus        25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~   72 (175)
T d1cdoa2          25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVF   72 (175)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHc
Confidence            3468899999999875543 334433 777999999999999888864

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.23  E-value=0.54  Score=34.77  Aligned_cols=40  Identities=33%  Similarity=0.571  Sum_probs=29.7

Q ss_pred             EEEEEcCCC--cHHHHHHHhcCCC-cEEEEeCCHHHHHHHHHH
Q 025428          167 SVLDIGTGN--GLLLQELSKQGFS-DLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       167 ~VLDiGcGt--G~~~~~la~~g~~-~v~gvD~s~~~l~~ar~~  206 (253)
                      +|+=||||.  |.++..|.+.|.. +|+|+|.+++.++.+++.
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~   45 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL   45 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHh
Confidence            577898873  3345556556653 899999999999988875

>d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: D(-)-3-hydroxybutyrate dehydrogenase
species: Pseudomonas fragi [TaxId: 296]

Probab=86.63  E-value=0.69  Score=36.95  Aligned_cols=76  Identities=13%  Similarity=0.238  Sum_probs=53.6

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCC-HHHHHHHHHHHHh-cCCCceEEEEeccCCCcC---------C
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYS-EDAINLAQSLANR-DGFSCIKFLVDDVLDTKL---------E  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s-~~~l~~ar~~~~~-~g~~~i~~~~~D~~~~~~---------~  228 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.++.+ ++.++.+.+.+.. .+ .++.++.+|+.+...         .
T Consensus         2 L~gK~alITGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~g-~~~~~~~~Dv~~~~~v~~~~~~~~~   79 (260)
T d1x1ta1           2 LKGKVAVVTGSTSGIGLGIATALAAQGA-DIVLNGFGDAAEIEKVRAGLAAQHG-VKVLYDGADLSKGEAVRGLVDNAVR   79 (260)
T ss_dssp             CTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEECCSCHHHHHHHHHHHHHHHT-SCEEEECCCTTSHHHHHHHHHHHHH
T ss_pred             CCcCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHHhcC-CcEEEEECCCCCHHHHHHHHHHHHH
Confidence            367788877777665   5567777788 89999996 5667766665543 34 378899999987531         1


Q ss_pred             --CCccEEEEcccc
Q 025428          229 --RQFQLVMDKGTL  240 (253)
Q Consensus       229 --~~fD~Vi~~~~l  240 (253)
                        +..|+++.+.-.
T Consensus        80 ~~G~iDiLVnnAG~   93 (260)
T d1x1ta1          80 QMGRIDILVNNAGI   93 (260)
T ss_dssp             HHSCCSEEEECCCC
T ss_pred             HhCCCcEEEeeccc
Confidence              578988876543

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=86.46  E-value=0.55  Score=34.78  Aligned_cols=45  Identities=24%  Similarity=0.391  Sum_probs=35.6

Q ss_pred             CCCCCEEEEEcC-C-CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          162 YLSSWSVLDIGT-G-NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       162 ~~~~~~VLDiGc-G-tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      ..++.+||=+|| | .|.++..+++. |...|+++|.+++-++.+++.
T Consensus        25 ~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~   72 (170)
T d1jvba2          25 LDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRA   72 (170)
T ss_dssp             CCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHH
T ss_pred             CCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHc
Confidence            367889999996 3 56666666665 777999999999998888874

>d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Peroxisomal trans 2-enoyl CoA reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.36  E-value=1.6  Score=35.55  Aligned_cols=76  Identities=11%  Similarity=0.153  Sum_probs=55.4

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcC----CCceEEEEeccCCCcC--------
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDG----FSCIKFLVDDVLDTKL--------  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g----~~~i~~~~~D~~~~~~--------  227 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+....    -.++.++.+|+.+...        
T Consensus        10 L~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~   88 (297)
T d1yxma1          10 LQGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKST   88 (297)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHH
Confidence            478899988877765   3456667787 89999999998887776665321    1268899999987531        


Q ss_pred             ---CCCccEEEEccc
Q 025428          228 ---ERQFQLVMDKGT  239 (253)
Q Consensus       228 ---~~~fD~Vi~~~~  239 (253)
                         -+..|+++.+..
T Consensus        89 ~~~~G~iDiLVnnAg  103 (297)
T d1yxma1          89 LDTFGKINFLVNNGG  103 (297)
T ss_dssp             HHHHSCCCEEEECCC
T ss_pred             HHHhCCeEEEEeecc
Confidence               157898887654

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=85.96  E-value=0.5  Score=37.82  Aligned_cols=76  Identities=12%  Similarity=0.132  Sum_probs=54.3

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHH-HhcCCCceEEEEeccCCCcC-----------
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLA-NRDGFSCIKFLVDDVLDTKL-----------  227 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~-~~~g~~~i~~~~~D~~~~~~-----------  227 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+ +..|. ++.++++|+.+...           
T Consensus         7 l~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dv~~~~~v~~~~~~~~~~   84 (260)
T d1h5qa_           7 FVNKTIIVTGGNRGIGLAFTRAVAAAGA-NVAVIYRSAADAVEVTEKVGKEFGV-KTKAYQCDVSNTDIVTKTIQQIDAD   84 (260)
T ss_dssp             CTTEEEEEETTTSHHHHHHHHHHHHTTE-EEEEEESSCTTHHHHHHHHHHHHTC-CEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCC-ceEEEEccCCCHHHHHHHHHHHHHH
Confidence            467889999977664   4566777787 8999999987776655544 34453 78899999987531           


Q ss_pred             CCCccEEEEcccc
Q 025428          228 ERQFQLVMDKGTL  240 (253)
Q Consensus       228 ~~~fD~Vi~~~~l  240 (253)
                      -+..|+++.+.-+
T Consensus        85 ~g~iDilVnnAg~   97 (260)
T d1h5qa_          85 LGPISGLIANAGV   97 (260)
T ss_dssp             SCSEEEEEECCCC
T ss_pred             hCCCcEecccccc
Confidence            1578988876543

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=85.87  E-value=0.66  Score=34.52  Aligned_cols=44  Identities=18%  Similarity=0.102  Sum_probs=36.0

Q ss_pred             CCCCCEEEEEcCC--CcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          162 YLSSWSVLDIGTG--NGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       162 ~~~~~~VLDiGcG--tG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      .+++.+||=.|+|  .|.++..+++. |+ +|++++.|++-++.+++.
T Consensus        26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga-~Vi~~~~s~~k~~~~~~l   72 (179)
T d1qora2          26 IKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKA   72 (179)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHH
T ss_pred             CCCCCEEEEEccccccchHHHHHHHHhCC-eEeecccchHHHHHHHhc
Confidence            3577899888555  67888888887 66 999999999999888864

>d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Retinal dehydrogenase/reductase 3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.65  E-value=1.4  Score=35.07  Aligned_cols=72  Identities=15%  Similarity=0.211  Sum_probs=53.4

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--  228 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++...+..     .++.++.+|+.+...         .  
T Consensus         4 l~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~-----~~~~~~~~Dvs~~~~v~~~~~~~~~~~   77 (250)
T d1ydea1           4 YAGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL-----PGAVFILCDVTQEDDVKTLVSETIRRF   77 (250)
T ss_dssp             TTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC-----TTEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc-----CCCeEEEccCCCHHHHHHHHHHHHHhc
Confidence            378899999987774   4566777787 8999999998887666542     367889999977531         1  


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-.
T Consensus        78 g~iDilVnnAG~   89 (250)
T d1ydea1          78 GRLDCVVNNAGH   89 (250)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEecccc
Confidence            578998877643

>d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Haemophilus influenzae [TaxId: 727]

Probab=85.64  E-value=0.84  Score=31.06  Aligned_cols=68  Identities=16%  Similarity=0.310  Sum_probs=39.7

Q ss_pred             CCCCEEEEEcC-CCc--HHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEccc
Q 025428          163 LSSWSVLDIGT-GNG--LLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGT  239 (253)
Q Consensus       163 ~~~~~VLDiGc-GtG--~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~  239 (253)
                      ...++|.=||. |+|  .++..|.++|+ +|+|.|......-   +.+...|+   .+..+...+. . ...|+|+....
T Consensus         6 ~~~~~ihfiGigG~GMs~LA~~L~~~G~-~VsGSD~~~~~~~---~~L~~~Gi---~v~~g~~~~~-i-~~~d~vV~S~A   76 (96)
T d1p3da1           6 RRVQQIHFIGIGGAGMSGIAEILLNEGY-QISGSDIADGVVT---QRLAQAGA---KIYIGHAEEH-I-EGASVVVVSSA   76 (96)
T ss_dssp             TTCCEEEEETTTSTTHHHHHHHHHHHTC-EEEEEESCCSHHH---HHHHHTTC---EEEESCCGGG-G-TTCSEEEECTT
T ss_pred             hhCCEEEEEEECHHHHHHHHHHHHhCCC-EEEEEeCCCChhh---hHHHHCCC---eEEECCcccc-C-CCCCEEEECCC
Confidence            35567777764 344  55677888898 9999998642111   22233444   4555444332 2 45788876544

>d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Glucose dehydrogenase
species: Bacillus megaterium [TaxId: 1404]

Probab=85.12  E-value=1.3  Score=35.47  Aligned_cols=76  Identities=17%  Similarity=0.141  Sum_probs=54.9

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCH-HHHHHHHHHHHhcCCCceEEEEeccCCCcC----------C
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSE-DAINLAQSLANRDGFSCIKFLVDDVLDTKL----------E  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~-~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------~  228 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.++.+. ..++...+.++..+. ++.++++|+.+...          .
T Consensus         5 L~gK~alITGas~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~~~~~~~~~g~-~~~~~~~Dvt~~~~v~~~~~~~~~~   82 (261)
T d1geea_           5 LEGKVVVITGSSTGLGKSMAIRFATEKA-KVVVNYRSKEDEANSVLEEIKKVGG-EAIAVKGDVTVESDVINLVQSAIKE   82 (261)
T ss_dssp             GTTCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTC-EEEEEECCTTSHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHHHHH
Confidence            467888888887774   4567777787 899999874 567777776666664 68889999987531          1


Q ss_pred             -CCccEEEEcccc
Q 025428          229 -RQFQLVMDKGTL  240 (253)
Q Consensus       229 -~~fD~Vi~~~~l  240 (253)
                       +..|+++.+.-+
T Consensus        83 ~G~iDiLVnnAG~   95 (261)
T d1geea_          83 FGKLDVMINNAGL   95 (261)
T ss_dssp             HSCCCEEEECCCC
T ss_pred             hCCCCEeecccee
Confidence             578988876543

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.63  E-value=1  Score=32.93  Aligned_cols=44  Identities=25%  Similarity=0.387  Sum_probs=34.2

Q ss_pred             CCCCCEEEEEcCCC-cHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          162 YLSSWSVLDIGTGN-GLLLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       162 ~~~~~~VLDiGcGt-G~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      ..++.+||=.|+|. |.+...+++. |. +|+++|.+++-++.+++.
T Consensus        25 ~~~g~~vlv~G~G~iG~~a~~~a~~~g~-~v~~~~~~~~r~~~~k~~   70 (168)
T d1rjwa2          25 AKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKEL   70 (168)
T ss_dssp             CCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT
T ss_pred             CCCCCEEEEeecccchhhhhHHHhcCCC-eEeccCCCHHHhhhhhhc
Confidence            35788999999984 5556666666 55 899999999999888763

>d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase
species: Streptomyces hydrogenans [TaxId: 1905]

Probab=84.59  E-value=1.5  Score=34.97  Aligned_cols=73  Identities=16%  Similarity=0.162  Sum_probs=53.4

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--  228 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++...+.+   + .++.++++|+.+...         .  
T Consensus         3 L~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~v~~~~~~~~~~~   77 (254)
T d1hdca_           3 LSGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATAREL---G-DAARYQHLDVTIEEDWQRVVAYAREEF   77 (254)
T ss_dssp             CCCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT---G-GGEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C-CceEEEEcccCCHHHHHHHHHHHHHHc
Confidence            478899999988873   5677777888 8999999998776554432   2 368899999987531         1  


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      ++.|+++.+.-+
T Consensus        78 g~iDilVnnAg~   89 (254)
T d1hdca_          78 GSVDGLVNNAGI   89 (254)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCccEEEecCcc
Confidence            578988876544

>d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Thermus thermophilus [TaxId: 274]

Probab=84.58  E-value=1.4  Score=34.82  Aligned_cols=69  Identities=23%  Similarity=0.265  Sum_probs=50.5

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--~  229 (253)
                      +++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+      ++.++.+|+.+..-         .  +
T Consensus         4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~------~~~~~~~Dv~~~~~v~~~~~~~~~~~g   76 (242)
T d1ulsa_           4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV------GAHPVVMDVADPASVERGFAEALAHLG   76 (242)
T ss_dssp             TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT------TCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc------CCeEEEEecCCHHHHHHHHHHHHHhcC
Confidence            67888988887774   3556666787 8999999998887765532      56788899987531         1  5


Q ss_pred             CccEEEEccc
Q 025428          230 QFQLVMDKGT  239 (253)
Q Consensus       230 ~fD~Vi~~~~  239 (253)
                      ..|+++.+.-
T Consensus        77 ~iDilVnnAG   86 (242)
T d1ulsa_          77 RLDGVVHYAG   86 (242)
T ss_dssp             SCCEEEECCC
T ss_pred             CceEEEECCc
Confidence            7898887654

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=84.27  E-value=1.7  Score=34.30  Aligned_cols=72  Identities=17%  Similarity=0.231  Sum_probs=52.2

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC-----------CC
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL-----------ER  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~-----------~~  229 (253)
                      +++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++...+.+.    .++.++..|+.+...           -+
T Consensus         3 ~gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~----~~~~~~~~Dv~~~~~v~~~~~~~~~~~g   77 (243)
T d1q7ba_           3 EGKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG----ANGKGLMLNVTDPASIESVLEKIRAEFG   77 (243)
T ss_dssp             TTCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG----GGEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC----CCCcEEEEEecCHHHhhhhhhhhhcccC
Confidence            67788888877664   4566677787 99999999998887766543    257788899877421           15


Q ss_pred             CccEEEEcccc
Q 025428          230 QFQLVMDKGTL  240 (253)
Q Consensus       230 ~fD~Vi~~~~l  240 (253)
                      ..|+++.+.-.
T Consensus        78 ~iDilVnnAg~   88 (243)
T d1q7ba_          78 EVDILVNNAGI   88 (243)
T ss_dssp             SCSEEEECCCC
T ss_pred             Ccceehhhhhh
Confidence            78988876543

>d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Salicylic acid carboxyl methyltransferase (SAMT)
domain: Salicylic acid carboxyl methyltransferase (SAMT)
species: Clarkia breweri [TaxId: 36903]

Probab=84.24  E-value=0.43  Score=40.69  Aligned_cols=83  Identities=12%  Similarity=0.085  Sum_probs=47.0

Q ss_pred             CEEEEEcCCCcHHHHHHHhc------------CC--C---cEEEEeCCHHHHHHHHHHHHhc-CC-Cc--eEEEEeccCC
Q 025428          166 WSVLDIGTGNGLLLQELSKQ------------GF--S---DLTGVDYSEDAINLAQSLANRD-GF-SC--IKFLVDDVLD  224 (253)
Q Consensus       166 ~~VLDiGcGtG~~~~~la~~------------g~--~---~v~gvD~s~~~l~~ar~~~~~~-g~-~~--i~~~~~D~~~  224 (253)
                      -+|.|+||.+|..++.+...            +.  .   +|+--|.-.+=-...-+.+... .. .+  +.-+-|.+..
T Consensus        53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~  132 (359)
T d1m6ex_          53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG  132 (359)
T ss_dssp             ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred             eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence            57999999999987544432            10  0   4445554332222111111111 10 11  3334455555


Q ss_pred             CcCC-CCccEEEEccccceeccCCC
Q 025428          225 TKLE-RQFQLVMDKGTLDAIGLHPD  248 (253)
Q Consensus       225 ~~~~-~~fD~Vi~~~~l~~i~~~pd  248 (253)
                      -.+| ++.+++++..+|||+.--|.
T Consensus       133 rLfP~~Slh~~~Ss~alHWLS~vP~  157 (359)
T d1m6ex_         133 RLFPRNTLHFIHSSYSLMWLSQVPI  157 (359)
T ss_dssp             CCSCTTCBSCEEEESCTTBCSSCCS
T ss_pred             hcCCCCceEEeeehhhhhhhhcCCc
Confidence            5555 89999999999999976564

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=83.49  E-value=0.16  Score=38.39  Aligned_cols=66  Identities=12%  Similarity=0.106  Sum_probs=44.3

Q ss_pred             CCCCCEEEEEcC--CCcHHHHHHHhc-CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----CCCCccEE
Q 025428          162 YLSSWSVLDIGT--GNGLLLQELSKQ-GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LERQFQLV  234 (253)
Q Consensus       162 ~~~~~~VLDiGc--GtG~~~~~la~~-g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----~~~~fD~V  234 (253)
                      ..++.+||=.|.  |.|.++..+++. |+ +|++++.+++-++.+++    .|.+.+  +  |..+..    ..+.+|+|
T Consensus        25 ~~~g~~VlI~ga~G~vG~~aiqlak~~G~-~vi~~~~~~~~~~~~~~----lGa~~~--i--~~~~~~~~~~~~~g~D~v   95 (171)
T d1iz0a2          25 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLA----LGAEEA--A--TYAEVPERAKAWGGLDLV   95 (171)
T ss_dssp             CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHH----TTCSEE--E--EGGGHHHHHHHTTSEEEE
T ss_pred             CCCCCEEEEEeccccchhhhhhhhccccc-ccccccccccccccccc----ccccee--e--ehhhhhhhhhcccccccc
Confidence            467889998884  357788888887 65 89999999988877765    354332  1  222211    13568888


Q ss_pred             EE
Q 025428          235 MD  236 (253)
Q Consensus       235 i~  236 (253)
                      +.
T Consensus        96 ~d   97 (171)
T d1iz0a2          96 LE   97 (171)
T ss_dssp             EE
T ss_pred             cc
Confidence            75

>d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sorbitol dehydrogenase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=83.02  E-value=1.8  Score=34.33  Aligned_cols=73  Identities=15%  Similarity=0.236  Sum_probs=53.6

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--~  229 (253)
                      +++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++.+.+.+   + .++.++.+|+.+...         .  +
T Consensus         4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~-~~~~~~~~Dvt~~~~v~~~~~~~~~~~g   78 (256)
T d1k2wa_           4 DGKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEI---G-PAACAIALDVTDQASIDRCVAELLDRWG   78 (256)
T ss_dssp             TTEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHH---C-TTEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C-CceEEEEeeCCCHHHHHHHHHHHHHHhC
Confidence            67788888887774   4667777787 8999999998777665543   3 368889999987531         1  5


Q ss_pred             CccEEEEccccc
Q 025428          230 QFQLVMDKGTLD  241 (253)
Q Consensus       230 ~fD~Vi~~~~l~  241 (253)
                      ..|+++.+.-..
T Consensus        79 ~iDilVnnAg~~   90 (256)
T d1k2wa_          79 SIDILVNNAALF   90 (256)
T ss_dssp             CCCEEEECCCCC
T ss_pred             CccEEEeecccc
Confidence            789888876543

>d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase
species: Pseudomonas sp., lb400 [TaxId: 306]

Probab=82.46  E-value=2.6  Score=33.74  Aligned_cols=71  Identities=18%  Similarity=0.243  Sum_probs=51.5

Q ss_pred             CCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--C
Q 025428          164 SSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--R  229 (253)
Q Consensus       164 ~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--~  229 (253)
                      +++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++...+..   + .++.++++|+.+...         .  +
T Consensus         4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~---~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~g   78 (276)
T d1bdba_           4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDH---G-DNVLGIVGDVRSLEDQKQAASRCVARFG   78 (276)
T ss_dssp             TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH---G-GGEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc---C-CCeeEEecccccHHHHHHHHHHHHHHhC
Confidence            67889888877665   3566666787 9999999998887665543   2 368899999987531         1  5


Q ss_pred             CccEEEEccc
Q 025428          230 QFQLVMDKGT  239 (253)
Q Consensus       230 ~fD~Vi~~~~  239 (253)
                      ..|+++.+.-
T Consensus        79 ~idilvnnAG   88 (276)
T d1bdba_          79 KIDTLIPNAG   88 (276)
T ss_dssp             CCCEEECCCC
T ss_pred             Cccccccccc
Confidence            7888887654

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=81.78  E-value=0.86  Score=33.88  Aligned_cols=46  Identities=22%  Similarity=0.203  Sum_probs=34.8

Q ss_pred             cCCCCCEEEEEcCCCcH-HHHHHHhc-CCCcEEEEeCCHHHHHHHHHH
Q 025428          161 KYLSSWSVLDIGTGNGL-LLQELSKQ-GFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       161 ~~~~~~~VLDiGcGtG~-~~~~la~~-g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      +.+++.+||=+|+|.+. +...+++. |..+|+++|.+++-++.+++.
T Consensus        25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~   72 (176)
T d2jhfa2          25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEV   72 (176)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHT
T ss_pred             CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHh
Confidence            34688999999996433 34444444 777999999999999988875

>d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Potassium channel-related protein MthK
species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]

Probab=81.76  E-value=0.74  Score=32.54  Aligned_cols=56  Identities=14%  Similarity=0.066  Sum_probs=41.4

Q ss_pred             CCCcHHHHHHHhc--CCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCc----CC-CCccEEEE
Q 025428          173 TGNGLLLQELSKQ--GFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTK----LE-RQFQLVMD  236 (253)
Q Consensus       173 cGtG~~~~~la~~--g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~----~~-~~fD~Vi~  236 (253)
                      ||.|.++..+++.  +. .++.+|.+++.++..+..       ++.++.||..+..    .. ...+.+++
T Consensus         6 ~G~g~~g~~l~~~L~~~-~i~vi~~d~~~~~~~~~~-------~~~~i~Gd~~~~~~L~~a~i~~A~~vi~   68 (129)
T d2fy8a1           6 CGWSESTLECLRELRGS-EVFVLAEDENVRKKVLRS-------GANFVHGDPTRVSDLEKANVRGARAVIV   68 (129)
T ss_dssp             ESCCHHHHHHHHTSCGG-GEEEEESCTTHHHHHHHT-------TCEEEESCTTSHHHHHHTTCTTCSEEEE
T ss_pred             ECCCHHHHHHHHHHcCC-CCEEEEcchHHHHHHHhc-------CccccccccCCHHHHHHhhhhcCcEEEE
Confidence            5678888888886  43 899999999988766542       5689999987753    12 56777775

>d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Hypothetical protein TTHA0369
species: Thermus thermophilus [TaxId: 274]

Probab=81.37  E-value=1.9  Score=34.05  Aligned_cols=70  Identities=16%  Similarity=0.300  Sum_probs=49.8

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--  228 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++..+.+++.       +..+++.|+.+...         .  
T Consensus         3 l~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~-------~~~~~~~Dv~~~~~v~~~~~~~~~~~   74 (248)
T d2d1ya1           3 FAGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAI-------GGAFFQVDLEDERERVRFVEEAAYAL   74 (248)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHH-------TCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-------CCeEEEEeCCCHHHHHHHHHHHHHhc
Confidence            467899988877664   3566667787 899999998876655432       34678889987531         1  


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      ++.|+++.+.-+
T Consensus        75 G~iDiLVnnAG~   86 (248)
T d2d1ya1          75 GRVDVLVNNAAI   86 (248)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCeEEEeCcC
Confidence            578988876543

>d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Enoyl-ACP reductase
species: Thermus thermophilus [TaxId: 274]

Probab=81.33  E-value=2  Score=33.83  Aligned_cols=74  Identities=19%  Similarity=0.161  Sum_probs=53.4

Q ss_pred             CCCCEEEEEcCC----CcH-HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------
Q 025428          163 LSSWSVLDIGTG----NGL-LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------  227 (253)
Q Consensus       163 ~~~~~VLDiGcG----tG~-~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------  227 (253)
                      .+++++|=-|++    -|. ++..|++.|+ +|+..+.++...+.+.+.....+  +..++++|+.+..-          
T Consensus         6 L~gK~alITGas~~~GIG~aiA~~la~~Ga-~V~i~~~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~~~~~   82 (256)
T d1ulua_           6 LSGKKALVMGVTNQRSLGFAIAAKLKEAGA-EVALSYQAERLRPEAEKLAEALG--GALLFRADVTQDEELDALFAGVKE   82 (256)
T ss_dssp             CTTCEEEEESCCCSSSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTT--CCEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEeCcHHHHHHHHHhhhccC--cccccccccCCHHHHHHHHHHHHH
Confidence            478899999964    343 6677888888 89999999887777776655443  56788899877521          


Q ss_pred             -CCCccEEEEccc
Q 025428          228 -ERQFQLVMDKGT  239 (253)
Q Consensus       228 -~~~fD~Vi~~~~  239 (253)
                       -+..|+++.+..
T Consensus        83 ~~g~iDilVnnag   95 (256)
T d1ulua_          83 AFGGLDYLVHAIA   95 (256)
T ss_dssp             HHSSEEEEEECCC
T ss_pred             hcCCceEEEeccc
Confidence             157888886553

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.23  E-value=1.3  Score=33.70  Aligned_cols=42  Identities=24%  Similarity=0.198  Sum_probs=32.3

Q ss_pred             CEEEEEcCCC--cHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHH
Q 025428          166 WSVLDIGTGN--GLLLQELSKQGFSDLTGVDYSEDAINLAQSLAN  208 (253)
Q Consensus       166 ~~VLDiGcGt--G~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~  208 (253)
                      ++|-=||+|+  ..++..++..|+ .|+.+|.+++.++.++++++
T Consensus         5 kkvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~   48 (192)
T d1f0ya2           5 KHVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIE   48 (192)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHH
T ss_pred             EEEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHH
Confidence            4788888874  223556666787 99999999999998888764

>d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.86  E-value=3.3  Score=32.82  Aligned_cols=76  Identities=14%  Similarity=0.118  Sum_probs=53.9

Q ss_pred             CCEEEEEcCCCcHHH----HHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------C-C
Q 025428          165 SWSVLDIGTGNGLLL----QELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------E-R  229 (253)
Q Consensus       165 ~~~VLDiGcGtG~~~----~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------~-~  229 (253)
                      +++|.=|=.|++.++    ..|++.+..+|+.++.+++.++.+.+.++..+. ++.++.+|+.+..-          . +
T Consensus         2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dvs~~~sv~~~~~~~~~~~g   80 (275)
T d1wmaa1           2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGL-SPRFHQLDIDDLQSIRALRDFLRKEYG   80 (275)
T ss_dssp             CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTC-CCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred             CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEEecCCHHHHHHHHHHHHHhcC
Confidence            456644444444444    445555344999999999999999888877764 78999999988531          1 6


Q ss_pred             CccEEEEccccc
Q 025428          230 QFQLVMDKGTLD  241 (253)
Q Consensus       230 ~fD~Vi~~~~l~  241 (253)
                      ..|++|.|.-+.
T Consensus        81 ~iDiLVnNAGi~   92 (275)
T d1wmaa1          81 GLDVLVNNAGIA   92 (275)
T ss_dssp             SEEEEEECCCCC
T ss_pred             CcEEEEEcCCcC
Confidence            799999886543

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=80.83  E-value=1.1  Score=32.76  Aligned_cols=39  Identities=23%  Similarity=0.323  Sum_probs=28.6

Q ss_pred             EEEEEcCC--CcHHHHHHHhcCCCcEEEEeCCHHHHHHHHHH
Q 025428          167 SVLDIGTG--NGLLLQELSKQGFSDLTGVDYSEDAINLAQSL  206 (253)
Q Consensus       167 ~VLDiGcG--tG~~~~~la~~g~~~v~gvD~s~~~l~~ar~~  206 (253)
                      +|.=||+|  -+.++..|.+.|+ +|++.|.+++.++.++++
T Consensus         2 kI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~   42 (165)
T d2f1ka2           2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER   42 (165)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT
T ss_pred             EEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHh
Confidence            46667776  3345566666777 999999999988877663

>d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Shikimate 5-dehydrogenase AroE
species: Haemophilus influenzae [TaxId: 727]

Probab=80.74  E-value=5.4  Score=29.38  Aligned_cols=73  Identities=14%  Similarity=0.074  Sum_probs=45.9

Q ss_pred             CCCCEEEEEcCCC-cHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcCCCCccEEEEcccc
Q 025428          163 LSSWSVLDIGTGN-GLLLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKLERQFQLVMDKGTL  240 (253)
Q Consensus       163 ~~~~~VLDiGcGt-G~~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~~~~fD~Vi~~~~l  240 (253)
                      .++++||=+|||- ++.....+..+..+++-+..+.+..+...+++...+  ++.....+...   ...+|+|+..-.+
T Consensus        16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~--~~~~~~~~~~~---~~~~diiIN~tp~   89 (171)
T d1p77a1          16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYG--NIQAVSMDSIP---LQTYDLVINATSA   89 (171)
T ss_dssp             CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGS--CEEEEEGGGCC---CSCCSEEEECCCC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhcc--ccchhhhcccc---ccccceeeecccc
Confidence            4778999999973 333333223456799999999977777666664332  44444444322   2568888875443

>d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 3beta/17beta hydroxysteroid dehydrogenase
species: Comamonas testosteroni [TaxId: 285]

Probab=80.58  E-value=1.7  Score=34.51  Aligned_cols=73  Identities=18%  Similarity=0.211  Sum_probs=52.8

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC----------C-
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL----------E-  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~----------~-  228 (253)
                      .+++++|=-|++.|.   ++..|++.|+ +|+.+|.+++.++...+.+   + .+..++++|+.+...          . 
T Consensus         4 L~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~~~~~~~~~~~~~~---~-~~~~~~~~Dv~~~~~~~~~~~~~~~~~   78 (253)
T d1hxha_           4 LQGKVALVTGGASGVGLEVVKLLLGEGA-KVAFSDINEAAGQQLAAEL---G-ERSMFVRHDVSSEADWTLVMAAVQRRL   78 (253)
T ss_dssp             TTTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHH---C-TTEEEECCCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHh---C-CCeEEEEeecCCHHHHHHHHHHHHHHh
Confidence            467888988877663   4666677787 8999999998887766554   2 257788889877531          1 


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      +..|+++.+.-.
T Consensus        79 g~iDilVnnAG~   90 (253)
T d1hxha_          79 GTLNVLVNNAGI   90 (253)
T ss_dssp             CSCCEEEECCCC
T ss_pred             CCCCeEEecccc
Confidence            578988887644

>d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: (s)-1-phenylethanol dehydrogenase
species: Azoarcus sp. ebn1 [TaxId: 76114]

Probab=80.39  E-value=2.3  Score=33.51  Aligned_cols=74  Identities=15%  Similarity=0.198  Sum_probs=51.0

Q ss_pred             CCCCEEEEEcCCCcH---HHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHhcCCCceEEEEeccCCCcC---------C--
Q 025428          163 LSSWSVLDIGTGNGL---LLQELSKQGFSDLTGVDYSEDAINLAQSLANRDGFSCIKFLVDDVLDTKL---------E--  228 (253)
Q Consensus       163 ~~~~~VLDiGcGtG~---~~~~la~~g~~~v~gvD~s~~~l~~ar~~~~~~g~~~i~~~~~D~~~~~~---------~--  228 (253)
                      .+++.+|=-|++.|.   ++..|++.|+ +|+.+|.++.  +.+.+.++..+ .++.++++|+.+..-         .  
T Consensus         3 L~gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~~~~~--~~~~~~~~~~g-~~~~~~~~Dvs~~~~v~~~~~~~~~~~   78 (247)
T d2ew8a1           3 LKDKLAVITGGANGIGRAIAERFAVEGA-DIAIADLVPA--PEAEAAIRNLG-RRVLTVKCDVSQPGDVEAFGKQVISTF   78 (247)
T ss_dssp             TTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCC--HHHHHHHHHTT-CCEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCch--HHHHHHHHHcC-CcEEEEEeeCCCHHHHHHHHHHHHHHc
Confidence            367888888877663   4666777788 8999999764  23334444445 378899999987531         1  


Q ss_pred             CCccEEEEcccc
Q 025428          229 RQFQLVMDKGTL  240 (253)
Q Consensus       229 ~~fD~Vi~~~~l  240 (253)
                      ++.|+++.+.-+
T Consensus        79 G~iDilVnnAG~   90 (247)
T d2ew8a1          79 GRCDILVNNAGI   90 (247)
T ss_dssp             SCCCEEEECCCC
T ss_pred             CCCCEEEECCCC
Confidence            578988876544