Citrus Sinensis ID: 025463

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MAYNDQQNMQRLVLPTTSTNPPPPTWLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQVRVQNHLHW
Secondary Structure (PSIPRED)
cccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEccccccccccccccccccccHHcccccccccccccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
mayndqqnmqrlvlpttstnpppptwlnnavrhhhhqnnddddddeeeapknnknnsasndngraedwetvkckaeivghPLYEQLLSAHVSCLriatpvdqlpkidaqLSRSRDVLAKYSAVangrvlddkELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLqsltgvspgestgatmsdddedqvdsdtnffdgsldgpdsmgfgplvptesERSLMERVRHELKHELKQVRVQNHLHW
Flexible Loop (DISEMBL)
MAYNDQQNMQRlvlpttstnpppPTWLNNAVRHHHHQNNDDDDDDEEEAPknnknnsasndngraedWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAvangrvlddkeLDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKhelkqvrvqnhlhw
Low Complexity Region (SEG)
MAYNDQQNMQRLVLpttstnpppptWLNNAVRHHHHQnnddddddeeeapknnknnsasndnGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSdddedqvdsdTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQVRVQNHLHW
Disordered region (IsUnstruct)
*******************************************************************WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQ********************************************************************************
Disordered Region (DISOPRED)
************************************************************************CKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKID**************************LDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQ************************************************************************R*QN**HW
Disordered Region (DISEMBL)
********MQRLVLPTTSTNPPPPTWLNNAVRH*******************************AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQVRVQNHLHW
Disordered Region (DISPRO)
*AYNDQQNMQRLVLPTTSTNPPPPTWLNN*V************************************WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYS***NGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLT***********************************SMGFGPLVPTESERSLMERVRHELKHELKQVRVQNHLHW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAYNDQQNMQRLVLPTTSTNPPPPTWLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQVRVQNHLHW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
O22300	426	Homeobox protein knotted-	N/A	no	0.698	0.413	0.830	9e-77
P48000	431	Homeobox protein knotted-	yes	no	0.718	0.419	0.740	1e-76
P48001	393	Homeobox protein knotted-	no	no	0.698	0.447	0.758	4e-76
O04136	427	Homeobox protein knotted-	N/A	no	0.865	0.510	0.635	3e-73
Q0J6N4	374	Homeobox protein knotted-	yes	no	0.674	0.454	0.780	3e-72
P48002	383	Homeobox protein knotted-	no	no	0.702	0.462	0.707	8e-69
Q0E3C3	313	Homeobox protein knotted-	yes	no	0.670	0.539	0.713	2e-61
Q94LW4	323	Homeobox protein knotted-	yes	no	0.686	0.535	0.674	5e-60
Q9FPQ8	291	Homeobox protein knotted-	no	no	0.678	0.587	0.611	2e-53
P46606	294	Homeobox protein HD1 OS=B	N/A	no	0.670	0.574	0.620	5e-52

>sp|O22300|LET12_SOLLC Homeobox protein knotted-1-like LET12 OS=Solanum lycopersicum GN=LET12 PE=2 SV=1

 Score =  286 bits (732), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 147/177 (83%), Positives = 162/177 (91%), Gaps = 1/177 (0%)

Query: 68  WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR 127
           WE  KCKA+I+ HPLY+QLLSAHVSCLRIATPVDQLP+IDAQL++S++V+AKYS +  G+
Sbjct: 158 WEREKCKADILNHPLYDQLLSAHVSCLRIATPVDQLPRIDAQLAQSQNVVAKYSVLGQGQ 217

Query: 128 V-LDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEST 186
             LDDK+LDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LEQSLQSLTGV+PGE T
Sbjct: 218 PPLDDKDLDQFMTHYVLLLSSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVAPGEGT 277

Query: 187 GATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
           GATMSDDD+DQ DSDTNF DG  DGPDSMGFGPLVPTESERSLMERVR ELKHELKQ
Sbjct: 278 GATMSDDDDDQADSDTNFLDGGFDGPDSMGFGPLVPTESERSLMERVRQELKHELKQ 334

May have a role to play in formative events in ovule and embryo morphogenesis.
Solanum lycopersicum (taxid: 4081)

>sp|P48000|KNAT3_ARATH Homeobox protein knotted-1-like 3 OS=Arabidopsis thaliana GN=KNAT3 PE=1 SV=1

 Score =  286 bits (732), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 143/193 (74%), Positives = 161/193 (83%), Gaps = 12/193 (6%)

Query: 60  NDNGRAE------DWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRS 113
           ND G A        W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S
Sbjct: 140 NDGGGATAADGVVSWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQS 199

Query: 114 RDVLAKYSAV---ANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDL 170
           + V+AKYSA+   A G V DDKELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++
Sbjct: 200 QHVVAKYSALGAAAQGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEI 259

Query: 171 EQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLM 230
           EQSLQSLTGVSPGE  GATMSDD+++QV+SD N FDG L   D +GFGPL+PTESERSLM
Sbjct: 260 EQSLQSLTGVSPGEGMGATMSDDEDEQVESDANMFDGGL---DVLGFGPLIPTESERSLM 316

Query: 231 ERVRHELKHELKQ 243
           ERVR ELKHELKQ
Sbjct: 317 ERVRQELKHELKQ 329

Arabidopsis thaliana (taxid: 3702)

>sp|P48001|KNAT4_ARATH Homeobox protein knotted-1-like 4 OS=Arabidopsis thaliana GN=KNAT4 PE=2 SV=3

 Score =  284 bits (726), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 138/182 (75%), Positives = 159/182 (87%), Gaps = 6/182 (3%)

Query: 65  AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVA 124
           AE W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYS + 
Sbjct: 115 AERWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLE 174

Query: 125 NGRVL---DDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVS 181
             + L   DDKELD FMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQS TGVS
Sbjct: 175 AAQGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVS 234

Query: 182 PGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHEL 241
           PGE TGATMS+D+++QV+SD + FDGSLDG   +GFGPLVPTESERSLMERVR ELKHEL
Sbjct: 235 PGEGTGATMSEDEDEQVESDAHLFDGSLDG---LGFGPLVPTESERSLMERVRQELKHEL 291

Query: 242 KQ 243
           KQ
Sbjct: 292 KQ 293

Arabidopsis thaliana (taxid: 3702)

>sp|O04136|KNAP3_MALDO Homeobox protein knotted-1-like 3 OS=Malus domestica PE=2 SV=1

 Score =  275 bits (702), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 150/236 (63%), Positives = 179/236 (75%), Gaps = 18/236 (7%)

Query: 26  WLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNG------------------RAED 67
           WL+ + R   H+N+ D +DD   A  +    + S+D+                      +
Sbjct: 102 WLSQSHRPILHRNHSDVNDDVTVAGDSMIAAALSHDSADLKPDSILNKNEGGGGDGGVMN 161

Query: 68  WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR 127
           W+  + KAEI+ HPLYE LLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYSA+ NG 
Sbjct: 162 WQNARHKAEILAHPLYEPLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGNGM 221

Query: 128 VLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTG 187
           V DDKELDQFM +YVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQSLTGVSPGE T 
Sbjct: 222 VGDDKELDQFMRNYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTS 281

Query: 188 ATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
           ATMSDD++DQVDSD N FD  ++G DSMGFGPL+PTESERSLMERVR ELKHELKQ
Sbjct: 282 ATMSDDEDDQVDSDANLFDEGMEGHDSMGFGPLIPTESERSLMERVRQELKHELKQ 337

Malus domestica (taxid: 3750)

>sp|Q0J6N4|KNOSD_ORYSJ Homeobox protein knotted-1-like 13 OS=Oryza sativa subsp. japonica GN=OSH45 PE=2 SV=2

 Score =  271 bits (694), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 135/173 (78%), Positives = 153/173 (88%), Gaps = 3/173 (1%)

Query: 72  KCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD 131
           +CKAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S+ V+AKYSA+A     DD
Sbjct: 107 RCKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQGVVAKYSALAAAAAGDD 166

Query: 132 -KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATM 190
            +ELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LEQ+LQSLTG SPGE TGATM
Sbjct: 167 GRELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQNLQSLTGASPGEGTGATM 226

Query: 191 SDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
           SD ++DQ DS+ N +D SLDG D+MGFG  +PTESERSLMERVR ELKHELKQ
Sbjct: 227 SDGEDDQADSEANMYDPSLDGADNMGFG--LPTESERSLMERVRQELKHELKQ 277

Isoform 3 acts as trancription activator, but isoforms 1 and 2 do not.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P48002|KNAT5_ARATH Homeobox protein knotted-1-like 5 OS=Arabidopsis thaliana GN=KNAT5 PE=1 SV=2

 Score =  260 bits (664), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 128/181 (70%), Positives = 150/181 (82%), Gaps = 4/181 (2%)

Query: 65  AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVA 124
            EDW +   KA I+ HP+YEQLL+AHV+CLR+ATPVDQ+P+IDAQLS+   V AKYS + 
Sbjct: 110 GEDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTL- 168

Query: 125 NGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGE 184
            G V+D+KELD FM+HYV+LL SFKEQLQ HV VHAMEA+ ACW++EQSLQSLTGVSP E
Sbjct: 169 -GVVVDNKELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSLTGVSPSE 227

Query: 185 STGATMSDDDED-QVDSDTNFFDGSLDGPDS-MGFGPLVPTESERSLMERVRHELKHELK 242
           S G TMSDD++D QV+S+ N FDGSLDG D  MGFGPLVPTE ERSLMERV+ ELKHELK
Sbjct: 228 SNGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERVKKELKHELK 287

Query: 243 Q 243
           Q
Sbjct: 288 Q 288

Arabidopsis thaliana (taxid: 3702)

>sp|Q0E3C3|KNOS2_ORYSJ Homeobox protein knotted-1-like 2 OS=Oryza sativa subsp. japonica GN=HOS58 PE=2 SV=2

 Score =  236 bits (601), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 122/171 (71%), Positives = 139/171 (81%), Gaps = 2/171 (1%)

Query: 74  KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD-K 132
           KA +  HPLYE+LL AHV+CLR+ATPVDQLP+IDAQ++     LA  SA A        +
Sbjct: 43  KAAVAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAASAAAAAGGPSGGE 102

Query: 133 ELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSD 192
           ELD FMTHYVLLL SFKEQLQQHVRVHAMEAVM CW+LEQSLQSLTG SPGE TGATMSD
Sbjct: 103 ELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMGCWELEQSLQSLTGASPGEGTGATMSD 162

Query: 193 DDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
           D+++QVDS+ N FDG+ DG D MGFGPL+ TE ERSL+ERVRHELK+ELKQ
Sbjct: 163 DEDNQVDSEANMFDGN-DGSDGMGFGPLMLTEGERSLVERVRHELKNELKQ 212

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94LW4|KNOSB_ORYSJ Homeobox protein knotted-1-like 11 OS=Oryza sativa subsp. japonica GN=HOS59 PE=2 SV=2

 Score =  231 bits (588), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 122/181 (67%), Positives = 142/181 (78%), Gaps = 8/181 (4%)

Query: 68  WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGR 127
           WE  + KA I  HPLYE+LL AHV+CLR+ATPVDQLP+IDAQ++     LA  +A A   
Sbjct: 44  WE--REKAAIAAHPLYERLLEAHVACLRVATPVDQLPRIDAQIAARPPPLAAATAAAAAA 101

Query: 128 VLDD-----KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSP 182
                    +ELD FMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LEQ+LQSLTG SP
Sbjct: 102 AAGGAPSGGEELDLFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELEQTLQSLTGASP 161

Query: 183 GESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELK 242
            E +GATMSDD+++QVDS++N FDG+ DG D MGFGPL+ TE ERSL+ERVR ELKHELK
Sbjct: 162 REGSGATMSDDEDNQVDSESNMFDGN-DGSDGMGFGPLMLTEGERSLVERVRQELKHELK 220

Query: 243 Q 243
           Q
Sbjct: 221 Q 221

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9FPQ8|KNAT7_ARATH Homeobox protein knotted-1-like 7 OS=Arabidopsis thaliana GN=KNAT7 PE=2 SV=1

 Score =  209 bits (531), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/175 (61%), Positives = 132/175 (75%), Gaps = 4/175 (2%)

Query: 72  KCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDD 131
           + K EI  HP+YEQLL+AHV+CLR+ATP+DQLP I+AQLS+S  +L  Y++ A G   D 
Sbjct: 28  QLKGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSYASTAVGYHHDR 87

Query: 132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMS 191
            ELD F+  YV++L SFKEQLQQHVRVHA+EAVMAC ++E +L SLTG + GE +GATMS
Sbjct: 88  HELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMS 147

Query: 192 DDDED---QVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
           +D++D      SD +  D S  G D  GFGPL+PTESERSLMERVR ELK ELKQ
Sbjct: 148 EDEDDLPMDFSSDNSGVDFS-GGHDMTGFGPLLPTESERSLMERVRQELKLELKQ 201

May be involved in secondary cell wall biosynthesis.

Arabidopsis thaliana (taxid: 3702)

>sp|P46606|HD1_BRANA Homeobox protein HD1 OS=Brassica napus GN=HD1 PE=2 SV=1

 Score =  204 bits (519), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 108/174 (62%), Positives = 134/174 (77%), Gaps = 5/174 (2%)

Query: 74  KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDK- 132
           K EI  HP+Y+QLL+AHV+CLR+ATP+DQLP I+AQLS S  +L  Y++ A G    D+ 
Sbjct: 32  KGEIATHPMYDQLLAAHVACLRVATPIDQLPIIEAQLSHSHHLLRSYASTAVGFSHHDRQ 91

Query: 133 ELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSD 192
           ELD F+  YV++L SFKEQLQQHVRVHA+EAVMAC ++E +L SLTG + GE +GATMS+
Sbjct: 92  ELDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSE 151

Query: 193 DDED-QVD--SDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
           D++D Q+D  SD +  D S  G D  GFGPL+PTESERSLMERVR ELK ELKQ
Sbjct: 152 DEDDLQMDFSSDNSGVDFS-GGHDMTGFGPLLPTESERSLMERVRQELKLELKQ 204

Possible developmental regulator.

Brassica napus (taxid: 3708)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
296084578	413	unnamed protein product [Vitis vinifera]	0.869	0.530	0.654	5e-82
225463014	430	PREDICTED: homeobox protein knotted-1-li	0.805	0.472	0.732	2e-81
329757149	368	knotted-like homeobox KNOX5 [Fragaria ve	0.805	0.551	0.724	2e-81
356562896	344	PREDICTED: homeobox protein knotted-1-li	0.837	0.613	0.693	2e-81
224142451	279	predicted protein [Populus trichocarpa]	0.765	0.691	0.743	2e-81
356548471	345	PREDICTED: homeobox protein knotted-1-li	0.841	0.614	0.693	2e-81
356515190	400	PREDICTED: homeobox protein knotted-1-li	0.702	0.442	0.802	9e-81
356507510	411	PREDICTED: homeobox protein knotted-1-li	0.702	0.430	0.796	1e-80
359475858	415	PREDICTED: homeobox protein knotted-1-li	0.710	0.431	0.785	8e-80
356563910	405	PREDICTED: homeobox protein knotted-1-li	0.849	0.528	0.694	5e-79

>gi|296084578|emb|CBI25599.3| unnamed protein product [Vitis vinifera]

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 165/252 (65%), Positives = 183/252 (72%), Gaps = 33/252 (13%)

Query: 24  PTWLNNAVRHH----------HHQNNDDDDDDEEEAPK----------NNKNNSASNDN- 62
           PTWLNNA+             H Q N D       A            +NK N  +N N 
Sbjct: 62  PTWLNNAILRQQSQYADGSFLHLQTNSDSTSSPATATTTTNQWLSRSMSNKRNGGNNQNR 121

Query: 63  --GRAED---------WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLS 111
                ED         WE  + KA+I+ HPLYEQLLSAHVSCLRIATPVDQLP+IDAQL+
Sbjct: 122 GDNNGEDMLDCDSGGNWENARYKADILAHPLYEQLLSAHVSCLRIATPVDQLPRIDAQLA 181

Query: 112 RSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLE 171
           +S+ V+ KYS +AN + LDDKELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW+LE
Sbjct: 182 QSQGVVTKYSVLAN-QPLDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWELE 240

Query: 172 QSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLME 231
           QSLQSLTGVSPGE TGATMSDD++DQ DS+ N FDGSLDGPDSMGFGPLVPTE+ERSLME
Sbjct: 241 QSLQSLTGVSPGEGTGATMSDDEDDQADSEINLFDGSLDGPDSMGFGPLVPTETERSLME 300

Query: 232 RVRHELKHELKQ 243
           RVR ELKHELKQ
Sbjct: 301 RVRQELKHELKQ 312

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463014|ref|XP_002265494.1| PREDICTED: homeobox protein knotted-1-like 3 [Vitis vinifera]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 153/209 (73%), Positives = 174/209 (83%), Gaps = 6/209 (2%)

Query: 40  DDDDDDEEEAPKNNKNNSASN-----DNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCL 94
           D + + E+    NN+N   +N     D     +WE  + KA+I+ HPLYEQLLSAHVSCL
Sbjct: 133 DLNGNQEKRNGGNNQNRGDNNGEDMLDCDSGGNWENARYKADILAHPLYEQLLSAHVSCL 192

Query: 95  RIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQ 154
           RIATPVDQLP+IDAQL++S+ V+ KYS +AN + LDDKELDQFMTHYVLLL SFKEQLQQ
Sbjct: 193 RIATPVDQLPRIDAQLAQSQGVVTKYSVLAN-QPLDDKELDQFMTHYVLLLCSFKEQLQQ 251

Query: 155 HVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDS 214
           HVRVHAMEAVMACW+LEQSLQSLTGVSPGE TGATMSDD++DQ DS+ N FDGSLDGPDS
Sbjct: 252 HVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDEDDQADSEINLFDGSLDGPDS 311

Query: 215 MGFGPLVPTESERSLMERVRHELKHELKQ 243
           MGFGPLVPTE+ERSLMERVR ELKHELKQ
Sbjct: 312 MGFGPLVPTETERSLMERVRQELKHELKQ 340

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|329757149|gb|AEC04754.1| knotted-like homeobox KNOX5 [Fragaria vesca]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 150/207 (72%), Positives = 172/207 (83%), Gaps = 4/207 (1%)

Query: 41  DDDDDEEEAPKNNKNNSA----SNDNGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRI 96
           D  D + +A  NNK+       S       +W+  + KAEI+ HPLYE LLSAHV+CLRI
Sbjct: 4   DSADMKNDAALNNKSEGGVAVESGGGDGVMNWQNARHKAEILAHPLYEPLLSAHVACLRI 63

Query: 97  ATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHV 156
           ATPVDQLP+IDAQL++S++V+AKYS +++G V DDKELDQFM HYVLLL SFKEQLQQHV
Sbjct: 64  ATPVDQLPRIDAQLAQSQNVVAKYSGMSHGMVGDDKELDQFMRHYVLLLCSFKEQLQQHV 123

Query: 157 RVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMG 216
           RVHAMEAVMACW++EQSLQSLTGVSPGE TGATMSDDDE+QVDSD N FDGS+DG DSMG
Sbjct: 124 RVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDDEEQVDSDANLFDGSMDGHDSMG 183

Query: 217 FGPLVPTESERSLMERVRHELKHELKQ 243
           FGPL+PTESERSLMERVR ELKHELKQ
Sbjct: 184 FGPLIPTESERSLMERVRQELKHELKQ 210

Source: Fragaria vesca

Species: Fragaria vesca

Genus: Fragaria

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562896|ref|XP_003549704.1| PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 154/222 (69%), Positives = 183/222 (82%), Gaps = 11/222 (4%)

Query: 22  PPPTWLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHP 81
           PPPTWLNN      +    +  D E+   +NN++ S    N  +ED    + KA+I+GHP
Sbjct: 33  PPPTWLNNV-----NARQQNFLDTEKSVDRNNRSES----NCESEDLR--EYKADILGHP 81

Query: 82  LYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHY 141
           LY+QLLSAHVSCLRIATPVDQLP+IDAQL +S+ V+ KYSA+A+  V+D+KELDQFMTHY
Sbjct: 82  LYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALAHNGVVDEKELDQFMTHY 141

Query: 142 VLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSD 201
           VLLL +FKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGE TGATMSDD++DQ +S+
Sbjct: 142 VLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESN 201

Query: 202 TNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
            N ++GSLDG +++GFGPLVPTESERSLMERVRHELKHELKQ
Sbjct: 202 ANLYEGSLDGGETLGFGPLVPTESERSLMERVRHELKHELKQ 243

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224142451|ref|XP_002324571.1| predicted protein [Populus trichocarpa] gi|222866005|gb|EEF03136.1| predicted protein [Populus trichocarpa]

 Score =  308 bits (788), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 145/195 (74%), Positives = 169/195 (86%), Gaps = 2/195 (1%)

Query: 51  KNNKNNSASND--NGRAEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDA 108
           +N  NN +  +  +  +++WE  KCKAEI+GHP YEQLL+AHV+CLRIATPVDQL +ID 
Sbjct: 1   ENTTNNGSEEELVDSVSDNWERAKCKAEILGHPFYEQLLAAHVACLRIATPVDQLARIDT 60

Query: 109 QLSRSRDVLAKYSAVANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACW 168
           QL+RS+DV+AKYS V  G V+D+KELDQFMTHY LLL SFK+QLQQHVRVHAMEAVMACW
Sbjct: 61  QLARSQDVIAKYSGVGCGHVVDEKELDQFMTHYALLLCSFKDQLQQHVRVHAMEAVMACW 120

Query: 169 DLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERS 228
           +LEQSLQSLTGVSPGE TGATMSDD++DQ +SDTNF DG+LDG D+MGFGPLVPTE+ERS
Sbjct: 121 ELEQSLQSLTGVSPGEGTGATMSDDEDDQAESDTNFNDGNLDGLDTMGFGPLVPTETERS 180

Query: 229 LMERVRHELKHELKQ 243
           LMERVR ELKHE KQ
Sbjct: 181 LMERVRQELKHEFKQ 195

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548471|ref|XP_003542625.1| PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max]

 Score =  307 bits (787), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 154/222 (69%), Positives = 181/222 (81%), Gaps = 10/222 (4%)

Query: 22  PPPTWLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHP 81
           PPPTWLNN   +   QN  D +         ++N S SN     E  +  + KA+I+GHP
Sbjct: 33  PPPTWLNNVNVNARQQNFLDSEKS------VDRNRSESN----CESEDLREYKADILGHP 82

Query: 82  LYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKELDQFMTHY 141
           LY+QLLSAHVSCLRIATPVDQLP+IDAQL +S+ V+ KYSA+A+  V+D+KELDQFMTHY
Sbjct: 83  LYDQLLSAHVSCLRIATPVDQLPRIDAQLQQSQRVVEKYSALAHNGVVDEKELDQFMTHY 142

Query: 142 VLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSD 201
           VLLL +FKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGE TGATMSDD++DQ +S+
Sbjct: 143 VLLLCAFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEGTGATMSDDEDDQAESN 202

Query: 202 TNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
            N ++GSLDG +++GFGPLVPTESERSLMERVRHELKHELKQ
Sbjct: 203 ANLYEGSLDGGETLGFGPLVPTESERSLMERVRHELKHELKQ 244

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515190|ref|XP_003526284.1| PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max]

 Score =  305 bits (782), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 142/177 (80%), Positives = 163/177 (92%)

Query: 67  DWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANG 126
           +W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYSA    
Sbjct: 133 NWQNARLKAEILTHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSAFGQA 192

Query: 127 RVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEST 186
            V DDKELDQF++HYVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQSLTGVSPGE T
Sbjct: 193 IVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGT 252

Query: 187 GATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
           GATMSDD+++QVDSD N FDG+LDGPDSMGFGPL+PTE+ERSLMERVRHELKHELKQ
Sbjct: 253 GATMSDDEDEQVDSDANLFDGALDGPDSMGFGPLIPTENERSLMERVRHELKHELKQ 309

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356507510|ref|XP_003522507.1| PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max]

 Score =  305 bits (782), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 141/177 (79%), Positives = 163/177 (92%)

Query: 67  DWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANG 126
           +W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYSA    
Sbjct: 144 NWQNARLKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLTQSQNVVAKYSAFGQA 203

Query: 127 RVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGEST 186
            V DDKELDQF++HYVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQSLTGVSPGE T
Sbjct: 204 IVGDDKELDQFLSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGT 263

Query: 187 GATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
           GATMSD++++QVDSD N FDG+LDGPDSMGFGPL+PTE+ERSLMERVRHELKHELKQ
Sbjct: 264 GATMSDEEDEQVDSDANLFDGALDGPDSMGFGPLIPTENERSLMERVRHELKHELKQ 320

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359475858|ref|XP_002285407.2| PREDICTED: homeobox protein knotted-1-like 3-like [Vitis vinifera]

 Score =  302 bits (774), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 143/182 (78%), Positives = 164/182 (90%), Gaps = 3/182 (1%)

Query: 65  AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVA 124
           A +W+  + KAEI+ HPLYEQLLS+HV+CLRIATPVDQLP+IDAQL++S+ V++KYSA+ 
Sbjct: 144 AVNWQNARQKAEILAHPLYEQLLSSHVACLRIATPVDQLPRIDAQLAQSQHVVSKYSALG 203

Query: 125 NGR---VLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVS 181
           +G    + D+KELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQSLTGVS
Sbjct: 204 HGNSQMLGDEKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVS 263

Query: 182 PGESTGATMSDDDEDQVDSDTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHEL 241
           PGE TGATMSDD+EDQ+DSD N FDGSL+G DSMGFGPLVPTESERSLMERVR ELKHEL
Sbjct: 264 PGEGTGATMSDDEEDQIDSDANLFDGSLEGADSMGFGPLVPTESERSLMERVRQELKHEL 323

Query: 242 KQ 243
           KQ
Sbjct: 324 KQ 325

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356563910|ref|XP_003550200.1| PREDICTED: homeobox protein knotted-1-like 3-like [Glycine max]

 Score =  300 bits (767), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 152/219 (69%), Positives = 169/219 (77%), Gaps = 5/219 (2%)

Query: 26  WLNNAVRHHHHQNNDDDDDDEEEAPKNNKNNSASNDNGRAEDWETVKCKAEIVGHPLYEQ 85
           WL     H H     DD   E       ++    +  G A  W+  +CK EI+ HPLYEQ
Sbjct: 101 WLARPALHRHPGEVIDDGAGESMV----EHADLKDGGGDAVSWQIGRCKTEILQHPLYEQ 156

Query: 86  LLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVA-NGRVLDDKELDQFMTHYVLL 144
           LLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKY+    N  V DDKELDQFM+HYVLL
Sbjct: 157 LLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYAVFGHNNIVADDKELDQFMSHYVLL 216

Query: 145 LYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSDDDEDQVDSDTNF 204
           L SFKEQLQQHVRVHAMEAVMACW+LEQSLQSLTGVSPGE TGATMSDD+ DQVDSD N 
Sbjct: 217 LCSFKEQLQQHVRVHAMEAVMACWELEQSLQSLTGVSPGEGTGATMSDDENDQVDSDANL 276

Query: 205 FDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
           FD S DG DSMGFGPLVPTESERSLMERVR ELKHELKQ
Sbjct: 277 FDCSFDGADSMGFGPLVPTESERSLMERVRQELKHELKQ 315

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2184911	393	KNAT4 "KNOTTED1-like homeobox	0.698	0.447	0.736	4.1e-65
TAIR|locus:2146945	431	KNAT3 "KNOTTED1-like homeobox	0.686	0.401	0.743	8.5e-65
TAIR|locus:2116632	383	KNAT5 "KNOTTED1-like homeobox	0.698	0.459	0.677	2.7e-59
TAIR|locus:2015554	291	KNAT7 "KNOTTED-like homeobox o	0.670	0.580	0.595	1.8e-46
TAIR|locus:2128828	398	KNAT1 "KNOTTED-like from Arabi	0.345	0.218	0.365	1.8e-06
TAIR|locus:2027089	382	STM "SHOOT MERISTEMLESS" [Arab	0.428	0.282	0.289	5.3e-06
UNIPROTKB|P46609	361	OSH1 "Homeobox protein knotted	0.361	0.252	0.33	2.7e-05

TAIR|locus:2184911 KNAT4 "KNOTTED1-like homeobox gene 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
 Identities = 134/182 (73%), Positives = 150/182 (82%)

Query:    65 AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAV- 123
             AE W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S++V+AKYS + 
Sbjct:   115 AERWQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSTLE 174

Query:   124 -ANGRVL-DDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVS 181
              A G +  DDKELD FMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQS TGVS
Sbjct:   175 AAQGLLAGDDKELDHFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSFTGVS 234

Query:   182 PGESTGATMSXXXXXXXXXXTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHEL 241
             PGE TGATMS           + FDGSLDG   +GFGPLVPTESERSLMERVR ELKHEL
Sbjct:   235 PGEGTGATMSEDEDEQVESDAHLFDGSLDG---LGFGPLVPTESERSLMERVRQELKHEL 291

Query:   242 KQ 243
             KQ
Sbjct:   292 KQ 293

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA;NAS

GO:0005737 "cytoplasm" evidence=NAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0048513 "organ development" evidence=RCA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2146945 KNAT3 "KNOTTED1-like homeobox gene 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
 Identities = 133/179 (74%), Positives = 147/179 (82%)

Query:    68 WETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAV---A 124
             W+  + KAEI+ HPLYEQLLSAHV+CLRIATPVDQLP+IDAQL++S+ V+AKYSA+   A
Sbjct:   154 WQNARHKAEILSHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQHVVAKYSALGAAA 213

Query:   125 NGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGE 184
              G V DDKELDQFMTHYVLLL SFKEQLQQHVRVHAMEAVMACW++EQSLQSLTGVSPGE
Sbjct:   214 QGLVGDDKELDQFMTHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGE 273

Query:   185 STGATMSXXXXXXXXXXTNFFDGSLDGPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
               GATMS           N FDG LD    +GFGPL+PTESERSLMERVR ELKHELKQ
Sbjct:   274 GMGATMSDDEDEQVESDANMFDGGLD---VLGFGPLIPTESERSLMERVRQELKHELKQ 329

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0009722 "detection of cytokinin stimulus" evidence=IEP

GO:0071345 "cellular response to cytokine stimulus" evidence=IDA

GO:0048513 "organ development" evidence=RCA

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2116632 KNAT5 "KNOTTED1-like homeobox gene 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
 Identities = 122/180 (67%), Positives = 140/180 (77%)

Query:    66 EDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVAN 125
             EDW +   KA I+ HP+YEQLL+AHV+CLR+ATPVDQ+P+IDAQLS+   V AKYS +  
Sbjct:   111 EDWRSASYKAAILRHPMYEQLLAAHVACLRVATPVDQIPRIDAQLSQLHTVAAKYSTL-- 168

Query:   126 GRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGES 185
             G V+D+KELD FM+HYV+LL SFKEQLQ HV VHAMEA+ ACW++EQSLQSLTGVSP ES
Sbjct:   169 GVVVDNKELDHFMSHYVVLLCSFKEQLQHHVCVHAMEAITACWEIEQSLQSLTGVSPSES 228

Query:   186 TGATMSXXXXXXXXXX-TNFFDGSLDGPDS-MGFGPLVPTESERSLMERVRHELKHELKQ 243
              G TMS            N FDGSLDG D  MGFGPLVPTE ERSLMERV+ ELKHELKQ
Sbjct:   229 NGKTMSDDEDDNQVESEVNMFDGSLDGSDCLMGFGPLVPTERERSLMERVKKELKHELKQ 288

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0009727 "detection of ethylene stimulus" evidence=IEP

GO:0071369 "cellular response to ethylene stimulus" evidence=IDA

GO:0048513 "organ development" evidence=RCA

TAIR|locus:2015554 KNAT7 "KNOTTED-like homeobox of Arabidopsis thaliana 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 103/173 (59%), Positives = 126/173 (72%)

Query:    74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKE 133
             K EI  HP+YEQLL+AHV+CLR+ATP+DQLP I+AQLS+S  +L  Y++ A G   D  E
Sbjct:    30 KGEIATHPMYEQLLAAHVACLRVATPIDQLPIIEAQLSQSHHLLRSYASTAVGYHHDRHE 89

Query:   134 LDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSXX 193
             LD F+  YV++L SFKEQLQQHVRVHA+EAVMAC ++E +L SLTG + GE +GATMS  
Sbjct:    90 LDNFLAQYVMVLCSFKEQLQQHVRVHAVEAVMACREIENNLHSLTGATLGEGSGATMSED 149

Query:   194 XXXXXXXXTNFFDGSLD---GPDSMGFGPLVPTESERSLMERVRHELKHELKQ 243
                     ++   G +D   G D  GFGPL+PTESERSLMERVR ELK ELKQ
Sbjct:   150 EDDLPMDFSSDNSG-VDFSGGHDMTGFGPLLPTESERSLMERVRQELKLELKQ 201

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010089 "xylem development" evidence=RCA;IMP

GO:2000652 "regulation of secondary cell wall biogenesis" evidence=IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2128828 KNAT1 "KNOTTED-like from Arabidopsis thaliana" [Arabidopsis thaliana (taxid:3702)]

 Score = 131 (51.2 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 34/93 (36%), Positives = 52/93 (55%)

Query:    74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDA--QLSRSRDVLAKYSAVANGRVLDD 131
             KA+I+ HP Y  LL A++ C +I  P D + +I A  Q   +R   +  S  A+ R   D
Sbjct:   135 KAKIIAHPHYSTLLQAYLDCQKIGAPPDVVDRITAARQDFEARQQRSTPSVSASSR---D 191

Query:   132 KELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAV 164
              ELDQFM  Y  +L  ++E+L + ++  AME +
Sbjct:   192 PELDQFMEAYCDMLVKYREELTRPIQ-EAMEFI 223

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0045165 "cell fate commitment" evidence=IMP

GO:0010051 "xylem and phloem pattern formation" evidence=RCA;IMP

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

GO:0001708 "cell fate specification" evidence=IMP

TAIR|locus:2027089 STM "SHOOT MERISTEMLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 127 (49.8 bits), Expect = 5.3e-06, P = 5.3e-06
 Identities = 33/114 (28%), Positives = 62/114 (54%)

Query:    74 KAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVANGRVLDDKE 133
             KA+I+ HP Y +LL+A+V+C ++  P + + +++   S +    A  S    G + +D  
Sbjct:   122 KAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACSSAAAAAA--SMGPTGCLGEDPG 179

Query:   134 LDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTG 187
             LDQFM  Y  +L  ++++L +  +    EA++    +E   +SL+  SP   +G
Sbjct:   180 LDQFMEAYCEMLVKYEQELSKPFK----EAMVFLQRVECQFKSLSLSSPSSFSG 229

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0019827 "stem cell maintenance" evidence=TAS

GO:0009934 "regulation of meristem structural organization" evidence=IMP

GO:0009691 "cytokinin biosynthetic process" evidence=TAS

GO:0048440 "carpel development" evidence=RCA;IMP

GO:0007389 "pattern specification process" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009887 "organ morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0010051 "xylem and phloem pattern formation" evidence=RCA

GO:0010093 "specification of floral organ identity" evidence=RCA

GO:0048438 "floral whorl development" evidence=RCA

GO:0048439 "flower morphogenesis" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0048513 "organ development" evidence=RCA

GO:0048519 "negative regulation of biological process" evidence=RCA

UNIPROTKB|P46609 OSH1 "Homeobox protein knotted-1-like 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 121 (47.7 bits), Expect = 2.7e-05, P = 2.7e-05
 Identities = 33/100 (33%), Positives = 58/100 (58%)

Query:    65 AEDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSR-SRDV-LAKYSA 122
             A D E +K K  I+ HP Y  LL+A++ C ++  P    P++ A+L+  ++D+ L + +A
Sbjct:    98 AADVEAIKAK--IISHPHYSSLLAAYLDCQKVGAP----PEVAARLTAVAQDLELRQRTA 151

Query:   123 VANGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAME 162
             +       + ELDQFM  Y  +L  ++E+L + ++  AME
Sbjct:   152 LGVLGAATEPELDQFMEAYHEMLVKYREELTRPLQ-EAME 190

GO:0003677 "DNA binding" evidence=IMP

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IMP

GO:0005634 "nucleus" evidence=IGI

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0J6N4	KNOSD_ORYSJ	No assigned EC number	0.7803	0.6746	0.4545	yes	no
Q0E3C3	KNOS2_ORYSJ	No assigned EC number	0.7134	0.6706	0.5399	yes	no
P48000	KNAT3_ARATH	No assigned EC number	0.7409	0.7182	0.4199	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
pfam03791	52	pfam03791, KNOX2, KNOX2 domain	1e-17
pfam03790	45	pfam03790, KNOX1, KNOX1 domain	1e-14

>gnl|CDD|112597 pfam03791, KNOX2, KNOX2 domain

 Score = 74.2 bits (183), Expect = 1e-17
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 4/54 (7%)

Query: 126 GRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG 179
             +  D ELDQFM  Y  +L  +KE+L +       EA+    ++E  LQ+L G
Sbjct: 3   RCIGADPELDQFMEAYCDVLVKYKEELSRPFD----EAMTFLNEIETQLQNLCG 52

The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerisation. Length = 52

>gnl|CDD|112596 pfam03790, KNOX1, KNOX1 domain

 Score = 65.7 bits (161), Expect = 1e-14
 Identities = 12/42 (28%), Positives = 25/42 (59%)

Query: 73  CKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSR 114
            KA+I  HPLY +LL+A++ C ++  P +   +++     ++
Sbjct: 3   IKAKIASHPLYPRLLAAYIDCQKVGAPPEVAARLEEIRRENQ 44

The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerisation. Length = 45

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PF03791	52	KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEIN	99.93
PF03790	45	KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEIN	99.88
KOG0773	342	consensus Transcription factor MEIS1 and related H	99.14
PF03789	22	ELK: ELK domain ; InterPro: IPR005539 This domain	86.02

>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2

Probab=99.93  E-value=2e-26  Score=165.41  Aligned_cols=51  Identities=45%  Similarity=0.674  Sum_probs=48.5

Q ss_pred             CCCCCCChhHHHHHHHHHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhhhC
Q 025463          125 NGRVLDDKELDQFMTHYVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTG  179 (252)
Q Consensus       125 ~~~ig~DPELDqFMeaYc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sLtg  179 (252)
                      ++++|+||||||||++||.||+||||||+|||    +||++|||+||+||++|||
T Consensus         2 ~~~~~~dpELDqFMeaYc~~L~kykeeL~~p~----~EA~~f~~~ie~qL~~Lt~   52 (52)
T PF03791_consen    2 SSSIGADPELDQFMEAYCDMLVKYKEELQRPF----QEAMEFCREIEQQLSSLTG   52 (52)
T ss_pred             CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhC
Confidence            35789999999999999999999999999999    6999999999999999996

KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus

>PF03790 KNOX1: KNOX1 domain ; InterPro: IPR005540 The MEINOX region is comprised of two domains, KNOX1 and KNOX2

Probab=99.88  E-value=1.2e-23  Score=147.34  Aligned_cols=44  Identities=34%  Similarity=0.687  Sum_probs=41.4

Q ss_pred             hhhhHHHhcCCChHHHHHHHHhhhcccCCCCchhhHHHHHhhhH
Q 025463           71 VKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSR  114 (252)
Q Consensus        71 ~~iKAkI~sHPlYp~LL~AyidCqKVGAPpevl~rLd~~~~~~q  114 (252)
                      +.|||+|++||+||+||+|||+|||||||||++++|++++++++
T Consensus         1 e~iKA~I~~HP~Y~~Ll~Ayi~C~KVGAP~e~~~~L~e~~~~~~   44 (45)
T PF03790_consen    1 EAIKAKIASHPLYPRLLAAYIDCQKVGAPPEVVARLDEILAESQ   44 (45)
T ss_pred             ChHHHHHHcCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhc
Confidence            47999999999999999999999999999999999999988754

KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus

>KOG0773 consensus Transcription factor MEIS1 and related HOX domain proteins [Transcription]

Probab=99.14  E-value=8e-12  Score=114.52  Aligned_cols=125  Identities=19%  Similarity=0.190  Sum_probs=100.4

Q ss_pred             hhhhhhhhhHHHhcCCChHHHHHHHHhhhcccCCCCchhhHHHHHhhhHHHHhhhhcccC-----CCCCCChhHHHHHHH
Q 025463           66 EDWETVKCKAEIVGHPLYEQLLSAHVSCLRIATPVDQLPKIDAQLSRSRDVLAKYSAVAN-----GRVLDDKELDQFMTH  140 (252)
Q Consensus        66 ~~~e~~~iKAkI~sHPlYp~LL~AyidCqKVGAPpevl~rLd~~~~~~q~~~~k~s~~~~-----~~ig~DPELDqFMea  140 (252)
                      ..+....+|+.+.+||+|..++.||++|++++.|.+.+.++.+.........+++...+.     ...+.+++++.||..
T Consensus        45 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~s~~~~~~~~~~~~~~~~~k  124 (342)
T KOG0773|consen   45 IMVSLASSKYLTAAQELLDEFCSAGLDCLKGKMPYDPVPRSPASLSPPEDKGARRGNATRESATLKAWLEEHRLNPYPSK  124 (342)
T ss_pred             cccccccccccccchhHHhHHhhccccccccccCcCccccccccccCccccccccccccccccccccchhhhhhccCchH
Confidence            456677899999999999999999999999999999999977765543322222221111     136789999999999


Q ss_pred             HHHHHHHHHHHHhhHHhhhhHHHHHHHHHHHHHHhhhhCCCCCCCCCCCCCC
Q 025463          141 YVLLLYSFKEQLQQHVRVHAMEAVMACWDLEQSLQSLTGVSPGESTGATMSD  192 (252)
Q Consensus       141 Yc~mL~kYKEEL~rP~r~~a~EA~~F~~~IE~QL~sLtg~Sp~egtgat~Sd  192 (252)
                      |+.+|..++..|+..+.+  ++|+.++++|+..+...++.++....+.+...
T Consensus       125 ~~~~ll~~~~~~~~~~~~--~~~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~  174 (342)
T KOG0773|consen  125 LEKILLAVITKLTLTQVS--TWFANARRRLKKELKMTWGPTPLALDGISRHF  174 (342)
T ss_pred             HHHHHHHHHHHhhhhhHH--HHHHHHHHHHHhccCCCCCCccccccchhhhh
Confidence            999999999999999733  89999999999999999999887665554443

>PF03789 ELK: ELK domain ; InterPro: IPR005539 This domain is required for the nuclear localisation of these proteins []

Probab=86.02  E-value=0.37  Score=29.66  Aligned_cols=14  Identities=36%  Similarity=0.306  Sum_probs=12.2

Q ss_pred             HHHHHHhHHHhhhc
Q 025463          236 ELKHELKQVRVQNH  249 (252)
Q Consensus       236 elk~elkqg~~~k~  249 (252)
                      |||++|+++|+..|
T Consensus         1 ELK~~LlrkY~g~i   14 (22)
T PF03789_consen    1 ELKHQLLRKYSGYI   14 (22)
T ss_pred             CHHHHHHHHHhHhH
Confidence            68999999998876

All of these proteins are members of the Tale/Knox homeodomain family, a subfamily, containing homeobox IPR001356 from INTERPRO.; GO: 0003677 DNA binding, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00