Citrus Sinensis ID: 025472

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHcccccccHHHHHHHHHccHHHHHHHHHHHHHcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHcccccccHHHHEHEEHHHHHccccccccHHHHHHccccccccccccccc
Coil and Loop (DISEMBL)
mivsywgveapkvnkddgsewkwncfrpweayEADLSIdlkkhhapttfsdkMALWTVkslrwptdlffqrRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELdkgnienvpapaiatdywrlppnstlkdVVLVVRAdeahhrdvnhyasdihyqgrqlrespaplgyh
Flexible Loop (DISEMBL)
mivsywgveapkvnkddgsewkWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAiatdywrlppnSTLKDVVLVVRADeahhrdvnhyasdihyqgrqlrespaplgyh
Low Complexity Region (SEG)
MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH
Disordered region (IsUnstruct)
**VSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHY***************
Disordered Region (DISOPRED)
MIVSYW****************WNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRES*AP****
Disordered Region (DISEMBL)
MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH
Disordered Region (DISPRO)
*IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG**L**SPAPL***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLRESPAPLGYH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q39219	354	Ubiquinol oxidase 1a, mit	yes	no	0.996	0.709	0.884	1e-136
O23913	325	Ubiquinol oxidase 1b, mit	no	no	1.0	0.775	0.857	1e-133
Q41224	353	Ubiquinol oxidase 1, mito	N/A	no	0.996	0.711	0.864	1e-132
Q07185	321	Ubiquinol oxidase 1, mito	yes	no	1.0	0.785	0.853	1e-132
Q40578	297	Ubiquinol oxidase 2, mito	N/A	no	0.996	0.845	0.864	1e-131
O22048	329	Ubiquinol oxidase 1c, mit	no	no	1.0	0.765	0.837	1e-129
P22185	349	Ubiquinol oxidase 1, mito	N/A	no	0.996	0.719	0.808	1e-124
Q40294	318	Ubiquinol oxidase, mitoch	N/A	no	1.0	0.792	0.742	1e-116
Q41266	333	Ubiquinol oxidase 2, mito	no	no	0.988	0.747	0.746	1e-114
Q8LEE7	318	Ubiquinol oxidase 3, mito	no	no	1.0	0.792	0.714	1e-114

>sp|Q39219|AOX1A_ARATH Ubiquinol oxidase 1a, mitochondrial OS=Arabidopsis thaliana GN=AOX1A PE=1 SV=2

 Score =  485 bits (1248), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 222/251 (88%), Positives = 238/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DGSEWKWNCFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSL
Sbjct: 104 IASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSL 163

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 164 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 223

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 224 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 283

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 284 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 343

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 344 LKEAPAPIGYH 354

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.
Arabidopsis thaliana (taxid: 3702)
EC: 1EC: .EC: -EC: .EC: -EC: .EC: -

>sp|O23913|AOX1B_ARATH Ubiquinol oxidase 1b, mitochondrial OS=Arabidopsis thaliana GN=AOX1B PE=1 SV=1

 Score =  474 bits (1221), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 216/252 (85%), Positives = 237/252 (94%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +IVSYWGV+  K+ K+DG+EWKW+CFRPWE Y++DL+IDLKKHH P+T  DK+A WTVKS
Sbjct: 74  LIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLAYWTVKS 133

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGML+HCKSLRRFE SGGWIKALLEEAENE
Sbjct: 134 LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENE 193

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVAKP WYERALV AVQG+FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE
Sbjct: 194 RMHLMTFMEVAKPNWYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 253

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLKELD GNIENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYASDIHYQGR
Sbjct: 254 FLKELDNGNIENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGR 313

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 314 ELKEAPAPIGYH 325

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q41224|AOX1_TOBAC Ubiquinol oxidase 1, mitochondrial OS=Nicotiana tabacum GN=AOX1 PE=1 SV=1

 Score =  470 bits (1210), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 217/251 (86%), Positives = 234/251 (93%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV+  KV K+DG+EWKWNCFRPWE Y+ADLSIDL KHHAPTTF DK A WTVKSL
Sbjct: 103 VVSYWGVQPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKSL 162

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIK LL+EAENER
Sbjct: 163 RYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKTLLDEAENER 222

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP WYERALVFAVQGVFFNAYF+ YL+SPK AHR+VGYLEEEAIHSYTEF
Sbjct: 223 MHLMTFMEVAKPNWYERALVFAVQGVFFNAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEF 282

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DY RLP +STL DVVLVVRADEAHHRDVNH+ASDIHYQG+Q
Sbjct: 283 LKELDKGNIENVPAPAIAIDYCRLPKDSTLLDVVLVVRADEAHHRDVNHFASDIHYQGQQ 342

Query: 242 LRESPAPLGYH 252
           L++SPAP+GYH
Sbjct: 343 LKDSPAPIGYH 353

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q07185|AOX1_SOYBN Ubiquinol oxidase 1, mitochondrial OS=Glycine max GN=AOX1 PE=1 SV=1

 Score =  469 bits (1207), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 215/252 (85%), Positives = 232/252 (92%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +IVSYWG++  K+ K DG+EWKWNCF PW  Y+ADLSIDL+KH  PTTF DKMA WTVK 
Sbjct: 70  VIVSYWGIQPSKITKKDGTEWKWNCFSPWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKV 129

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR+PTD+FFQRRYGCRAMMLETVAAVPGMV GMLLHCKSLRRFEHSGGW KALLEEAENE
Sbjct: 130 LRYPTDVFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENE 189

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYL+SPKFAHRM GYLEEEAIHSYTE
Sbjct: 190 RMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTE 249

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLKELDKGNIENVPAPAIA DYW+LPP STL+DVV+VVRADEAHHRDVNH+ASDIHYQGR
Sbjct: 250 FLKELDKGNIENVPAPAIAIDYWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGR 309

Query: 241 QLRESPAPLGYH 252
           +LRE+ AP+GYH
Sbjct: 310 ELREAAAPIGYH 321

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q40578|AOX2_TOBAC Ubiquinol oxidase 2, mitochondrial OS=Nicotiana tabacum GN=AOX2 PE=1 SV=2

 Score =  468 bits (1203), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 217/251 (86%), Positives = 234/251 (93%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYWGV   KV K+DG+EWKWNCFRPWE Y+ADLSIDL KHHAPTTF DK A WTVK+L
Sbjct: 47  VVSYWGVPPSKVTKEDGTEWKWNCFRPWETYKADLSIDLTKHHAPTTFLDKFAYWTVKAL 106

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 107 RYPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 166

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKP WYERALVFAVQGVF NAYF+ YL+SPK AHR+VGYLEEEAIHSYTEF
Sbjct: 167 MHLMTFMEVAKPNWYERALVFAVQGVFINAYFVTYLLSPKLAHRIVGYLEEEAIHSYTEF 226

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP +STL+DVVLVVRADEAHHRDVNH+A DIHYQG+Q
Sbjct: 227 LKELDKGNIENVPAPAIAIDYWRLPKDSTLRDVVLVVRADEAHHRDVNHFAPDIHYQGQQ 286

Query: 242 LRESPAPLGYH 252
           L++SPAP+GYH
Sbjct: 287 LKDSPAPIGYH 297

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|O22048|AOX1C_ARATH Ubiquinol oxidase 1c, mitochondrial OS=Arabidopsis thaliana GN=AOX1C PE=1 SV=1

 Score =  462 bits (1188), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 211/252 (83%), Positives = 234/252 (92%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +IVSYWGV+  K+ K+DG+EWKW+CFRPWE Y+ADL+IDLKKHH P+T  DK+A W VKS
Sbjct: 78  LIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDKIAYWMVKS 137

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LRWPTDLFFQRRYGCRA+MLETVAAVPGMVGGML+H KSLRRFE SGGWIKALLEEAENE
Sbjct: 138 LRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLEEAENE 197

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTFMEVAKPKWYERALV +VQGVFFNAY +GY+ISPKFAHRMVGYLEEEAIHSYTE
Sbjct: 198 RMHLMTFMEVAKPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEEAIHSYTE 257

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLKELD GNIENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYASDIHYQG 
Sbjct: 258 FLKELDNGNIENVPAPAIAVDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGH 317

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 318 ELKEAPAPIGYH 329

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|P22185|AOX1_TYPVN Ubiquinol oxidase 1, mitochondrial OS=Typhonium venosum GN=AOX1 PE=1 SV=1

 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 203/251 (80%), Positives = 227/251 (90%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           +VSYW V   KV+K+DGSEW+W CFRPWE Y+ADLSIDL KHH PTT  DK+AL TVK+L
Sbjct: 99  VVSYWAVPPSKVSKEDGSEWRWTCFRPWETYQADLSIDLHKHHVPTTILDKLALRTVKAL 158

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTD+FFQRRY CRAMMLETVAAVPGMVGG+LLH KSLRRFEHSGGWI+ALLEEAENER
Sbjct: 159 RWPTDIFFQRRYACRAMMLETVAAVPGMVGGVLLHLKSLRRFEHSGGWIRALLEEAENER 218

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVA+P+WYERALV AVQGVFFNAYFLGYL+SPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 219 MHLMTFMEVAQPRWYERALVLAVQGVFFNAYFLGYLLSPKFAHRVVGYLEEEAIHSYTEF 278

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK++D G I++ PAPAIA DYWRLP  STL+DVV VVRADEAHHRDVNH+ASD+HYQ  +
Sbjct: 279 LKDIDSGAIQDCPAPAIALDYWRLPQGSTLRDVVTVVRADEAHHRDVNHFASDVHYQDLE 338

Query: 242 LRESPAPLGYH 252
           L+ +PAPLGYH
Sbjct: 339 LKTTPAPLGYH 349

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures. In S.guttatum the alternative respiratory pathway is thermogenic.

Typhonium venosum (taxid: 4463)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q40294|AOX1_MANIN Ubiquinol oxidase, mitochondrial OS=Mangifera indica GN=AOMI 1 PE=1 SV=2

 Score =  419 bits (1076), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 187/252 (74%), Positives = 220/252 (87%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           M+ +YWG+  PK+ ++DGSEW WNCF PWE Y +DLSIDLKKHH P TF DK A  TVK 
Sbjct: 67  MVSNYWGISRPKITREDGSEWPWNCFMPWETYRSDLSIDLKKHHVPRTFMDKFAYRTVKI 126

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLR+ E SGGWIKALLEEAENE
Sbjct: 127 LRVPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRKLEQSGGWIKALLEEAENE 186

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMT +E+ +PKWYER LV AVQGVFFN++F+ Y++SPK AHR+VGYLEEEAIHSYTE
Sbjct: 187 RMHLMTMVELVQPKWYERLLVLAVQGVFFNSFFVLYVLSPKLAHRIVGYLEEEAIHSYTE 246

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           +LK++D G I+N+PAPAIA DYWRLP ++TLKDV+ VVRADEAHHRDVNH+ASD+  QG+
Sbjct: 247 YLKDIDSGAIKNIPAPAIAIDYWRLPKDATLKDVITVVRADEAHHRDVNHFASDVQVQGK 306

Query: 241 QLRESPAPLGYH 252
           +LR++PAP+GYH
Sbjct: 307 ELRDAPAPVGYH 318

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Mangifera indica (taxid: 29780)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q41266|AOX2_SOYBN Ubiquinol oxidase 2, mitochondrial OS=Glycine max GN=AOX2 PE=1 SV=2

 Score =  412 bits (1059), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 186/249 (74%), Positives = 219/249 (87%)

Query: 4   SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
           SYWG+  PKV ++DG+EW WNCF PWE+Y +++SIDL KHH P    DK+A  TVK LR 
Sbjct: 85  SYWGISRPKVVREDGTEWPWNCFMPWESYRSNVSIDLTKHHVPKNVLDKVAYRTVKLLRI 144

Query: 64  PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
           PTDLFF+RRYGCRAMMLETVAAVPGMVGGMLLH +SLR+F+ SGGWIKALLEEAENERMH
Sbjct: 145 PTDLFFKRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRKFQQSGGWIKALLEEAENERMH 204

Query: 124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
           LMT +E+ KPKWYER LV AVQGVFFNA+F+ Y++SPK AHR+VGYLEEEAIHSYTE+LK
Sbjct: 205 LMTMVELVKPKWYERLLVLAVQGVFFNAFFVLYILSPKVAHRIVGYLEEEAIHSYTEYLK 264

Query: 184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
           +L+ G IENVPAPAIA DYWRLP ++ LKDV+ V+RADEAHHRDVNH+ASDIH+QG++LR
Sbjct: 265 DLESGAIENVPAPAIAIDYWRLPKDARLKDVITVIRADEAHHRDVNHFASDIHFQGKELR 324

Query: 244 ESPAPLGYH 252
           E+PAP+GYH
Sbjct: 325 EAPAPIGYH 333

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Glycine max (taxid: 3847)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

>sp|Q8LEE7|AOX3_ARATH Ubiquinol oxidase 3, mitochondrial OS=Arabidopsis thaliana GN=AOX3 PE=2 SV=2

 Score =  410 bits (1055), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 180/252 (71%), Positives = 220/252 (87%)

Query: 1   MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
           +I +YWG+   K+ K DGS WKWNCF+PW++Y+ D+SID+ KHH P+ F+DK A WTV++
Sbjct: 67  VISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQT 126

Query: 61  LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
           L+ P  LFFQR++ C AM+LETVAAVPGMVGGMLLH KSLRRFEHSGGWIKALLEEAENE
Sbjct: 127 LKIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENE 186

Query: 121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
           RMHLMTF+E+++PKWYERA+VF VQGVFFNAYFL Y+ISPK AHR+ GYLEEEA++SYTE
Sbjct: 187 RMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTE 246

Query: 181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
           FLK++D G  EN PAPAIA DYWRLP ++TL+DVV V+RADEAHHRD+NHYASDI ++G 
Sbjct: 247 FLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADEAHHRDINHYASDIQFKGH 306

Query: 241 QLRESPAPLGYH 252
           +L+E+PAP+GYH
Sbjct: 307 ELKEAPAPIGYH 318

Catalyzes cyanide-resistant oxygen consumption. May increase respiration when the cytochrome respiratory pathway is restricted, or in response to low temperatures.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
190710541	336	mitochondrial alternative oxidase precur	0.996	0.747	0.996	1e-149
297830954	354	hypothetical protein ARALYDRAFT_479749 [	0.996	0.709	0.888	1e-135
327554104	360	mitochondrial alternative oxidase 1a [Br	0.996	0.697	0.880	1e-135
15228734	354	alternative oxidase 1A [Arabidopsis thal	0.996	0.709	0.884	1e-135
224118194	336	predicted protein [Populus trichocarpa]	0.996	0.747	0.892	1e-134
4006943	353	alternative oxidase [Arabidopsis thalian	0.996	0.711	0.884	1e-134
82409049	330	alternative oxidase [Gossypium hirsutum]	0.996	0.760	0.888	1e-134
166876	305	oxidase [Arabidopsis thaliana]	0.996	0.822	0.884	1e-134
70799007	316	mitochondrial alternative oxidase 1 [Vig	0.996	0.794	0.892	1e-134
1872517	287	alternative oxidase, partial [Arabidopsi	0.996	0.874	0.884	1e-134

>gi|190710541|gb|ACE95101.1| mitochondrial alternative oxidase precursor [Citrus sinensis]

 Score =  533 bits (1372), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 250/251 (99%), Positives = 251/251 (100%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL
Sbjct: 86  IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 145

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER
Sbjct: 146 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 205

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 206 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH+ASDIHYQGRQ
Sbjct: 266 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHFASDIHYQGRQ 325

Query: 242 LRESPAPLGYH 252
           LRESPAPLGYH
Sbjct: 326 LRESPAPLGYH 336

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830954|ref|XP_002883359.1| hypothetical protein ARALYDRAFT_479749 [Arabidopsis lyrata subsp. lyrata] gi|297329199|gb|EFH59618.1| hypothetical protein ARALYDRAFT_479749 [Arabidopsis lyrata subsp. lyrata]

 Score =  486 bits (1250), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 223/251 (88%), Positives = 237/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DGSEWKWNCFRPWE Y ADL+IDLKKHH PTTF D++A WTVKSL
Sbjct: 104 IASYWGVEPNKITKEDGSEWKWNCFRPWETYNADLTIDLKKHHVPTTFLDRLAYWTVKSL 163

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 164 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 223

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 224 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 283

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 284 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVIVVRADEAHHRDVNHFASDIHYQGRE 343

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 344 LKEAPAPIGYH 354

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327554104|gb|AEB00555.1| mitochondrial alternative oxidase 1a [Brassica juncea]

 Score =  485 bits (1249), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 221/251 (88%), Positives = 237/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DG+EWKWNCFRPWE Y+ADL+IDL KHH PTTF D++A WTVKSL
Sbjct: 110 IASYWGVEPSKITKEDGTEWKWNCFRPWETYKADLTIDLSKHHVPTTFLDRLAYWTVKSL 169

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 170 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 229

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 230 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 289

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 290 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 349

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 350 LKEAPAPIGYH 360

Source: Brassica juncea

Species: Brassica juncea

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228734|ref|NP_188876.1| alternative oxidase 1A [Arabidopsis thaliana] gi|3915639|sp|Q39219.2|AOX1A_ARATH RecName: Full=Ubiquinol oxidase 1a, mitochondrial; AltName: Full=Alternative oxidase 1a; Flags: Precursor gi|13877807|gb|AAK43981.1|AF370166_1 putative alternative oxidase 1a precursor [Arabidopsis thaliana] gi|2506083|dbj|BAA22625.1| alternative oxidase [Arabidopsis thaliana] gi|9293872|dbj|BAB01775.1| alternative oxidase 1a precursor [Arabidopsis thaliana] gi|16323480|gb|AAL15234.1| putative alternative oxidase 1a precursor [Arabidopsis thaliana] gi|332643106|gb|AEE76627.1| alternative oxidase 1A [Arabidopsis thaliana]

 Score =  485 bits (1248), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 222/251 (88%), Positives = 238/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DGSEWKWNCFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSL
Sbjct: 104 IASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSL 163

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 164 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 223

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 224 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 283

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 284 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 343

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 344 LKEAPAPIGYH 354

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118194|ref|XP_002317754.1| predicted protein [Populus trichocarpa] gi|222858427|gb|EEE95974.1| predicted protein [Populus trichocarpa]

 Score =  483 bits (1244), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/251 (89%), Positives = 236/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWGV   +V K+DG+EWKWNCFRPWE Y ADLSI+L KHHAP TF DKMA WTVKSL
Sbjct: 86  IVSYWGVPPSRVTKEDGTEWKWNCFRPWETYSADLSINLTKHHAPVTFLDKMAYWTVKSL 145

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER
Sbjct: 146 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 205

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVA P+WYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 206 MHLMTFMEVANPRWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 265

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNI+NVPAPAIA DYWRLPPNSTL+DVV VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 266 LKELDKGNIKNVPAPAIAIDYWRLPPNSTLRDVVEVVRADEAHHRDVNHFASDIHYQGRE 325

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 326 LKEAPAPIGYH 336

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4006943|emb|CAA10364.1| alternative oxidase [Arabidopsis thaliana]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/251 (88%), Positives = 238/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DGSEWKWNCFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSL
Sbjct: 103 IASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSL 162

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 163 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 222

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 223 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 282

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 283 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 342

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 343 LKEAPAPIGYH 353

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82409049|gb|ABB73306.1| alternative oxidase [Gossypium hirsutum]

 Score =  483 bits (1243), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 223/251 (88%), Positives = 237/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWG++  KV+K+DGS WKW CFRPW+ Y+ADLSIDLKKHHAP T  DKMA WTVKSL
Sbjct: 80  IVSYWGLDPTKVSKEDGSPWKWTCFRPWDTYQADLSIDLKKHHAPVTVLDKMAYWTVKSL 139

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER
Sbjct: 140 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 199

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEV+ P+WYERALVFAVQGVFFNAYFLGY+ISPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 200 MHLMTFMEVSDPRWYERALVFAVQGVFFNAYFLGYIISPKFAHRVVGYLEEEAIHSYTEF 259

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELD GNIENVPAP IA DYWRLPPNSTL+DVVL VRADEAHHRDVNH+ASDIHYQGRQ
Sbjct: 260 LKELDNGNIENVPAPPIAIDYWRLPPNSTLRDVVLAVRADEAHHRDVNHFASDIHYQGRQ 319

Query: 242 LRESPAPLGYH 252
           L+E+PAPLGYH
Sbjct: 320 LKEAPAPLGYH 330

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166876|gb|AAA32870.1| oxidase [Arabidopsis thaliana]

 Score =  483 bits (1242), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/251 (88%), Positives = 238/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DGSEWKWNCFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSL
Sbjct: 55  IASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSL 114

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 115 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 174

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 175 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 234

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 235 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 294

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 295 LKEAPAPIGYH 305

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|70799007|gb|AAZ09196.1| mitochondrial alternative oxidase 1 [Vigna unguiculata] gi|70799009|gb|AAZ09197.1| mitochondrial alternative oxidase 1 [Vigna unguiculata]

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 224/251 (89%), Positives = 237/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWGVE  K+ K DG+EWKWNCFRPWE Y+AD+SIDL KHHAPTTF DKMALWTVK+L
Sbjct: 66  IVSYWGVEPSKITKLDGTEWKWNCFRPWETYKADVSIDLNKHHAPTTFLDKMALWTVKTL 125

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R+PTDLFFQRRYGCRAMMLETVAAVPGMV GMLLH KSLRRFEHSGGWIKALLEEAENER
Sbjct: 126 RYPTDLFFQRRYGCRAMMLETVAAVPGMVAGMLLHLKSLRRFEHSGGWIKALLEEAENER 185

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGY+ISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 186 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYMISPKFAHRMVGYLEEEAIHSYTEF 245

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYW+LPP+STLKDVV VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 246 LKELDKGNIENVPAPAIAIDYWQLPPDSTLKDVVTVVRADEAHHRDVNHFASDIHYQGRE 305

Query: 242 LRESPAPLGYH 252
           LRE+ AP+GYH
Sbjct: 306 LREAAAPIGYH 316

Source: Vigna unguiculata

Species: Vigna unguiculata

Genus: Vigna

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|1872517|gb|AAB49302.1| alternative oxidase, partial [Arabidopsis thaliana]

 Score =  482 bits (1240), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 222/251 (88%), Positives = 238/251 (94%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           I SYWGVE  K+ K+DGSEWKWNCFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSL
Sbjct: 37  IASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSL 96

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct: 97  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 156

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct: 157 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 216

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct: 217 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 276

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 277 LKEAPAPIGYH 287

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2087807	354	AOX1A "alternative oxidase 1A"	0.996	0.709	0.884	8.7e-127
TAIR|locus:2087882	325	AOX1B "alternative oxidase 1B"	1.0	0.775	0.857	4.9e-124
UNIPROTKB|Q07185	321	AOX1 "Ubiquinol oxidase 1, mit	1.0	0.785	0.853	5.1e-122
TAIR|locus:2089124	329	AOX1C "alternative oxidase 1C"	1.0	0.765	0.837	5.8e-121
UNIPROTKB|Q8W855	345	AOX1c "Alternative oxidase" [O	0.988	0.721	0.791	2.2e-112
TAIR|locus:2028311	318	AOX1D "alternative oxidase 1D"	1.0	0.792	0.714	3.1e-106
TAIR|locus:2173353	353	AOX2 "alternative oxidase 2" [	0.996	0.711	0.739	8.3e-106
ASPGD|ASPL0000047182	354	AN2099 [Emericella nidulans (t	0.615	0.437	0.578	6.8e-51
UNIPROTKB|O93788	377	AOX1 "Alternative oxidase, mit	0.638	0.427	0.502	1.4e-46
DICTYBASE|DDB_G0280819	337	aoxA [Dictyostelium discoideum	0.738	0.551	0.486	1.8e-46

TAIR|locus:2087807 AOX1A "alternative oxidase 1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 1245 (443.3 bits), Expect = 8.7e-127, P = 8.7e-127
 Identities = 222/251 (88%), Positives = 238/251 (94%)

Query:     2 IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
             I SYWGVE  K+ K+DGSEWKWNCFRPWE Y+AD++IDLKKHH PTTF D++A WTVKSL
Sbjct:   104 IASYWGVEPNKITKEDGSEWKWNCFRPWETYKADITIDLKKHHVPTTFLDRIAYWTVKSL 163

Query:    62 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
             RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFE SGGWIKALLEEAENER
Sbjct:   164 RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEQSGGWIKALLEEAENER 223

Query:   122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
             MHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF
Sbjct:   224 MHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 283

Query:   182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
             LKELDKGNIENVPAPAIA DYWRLP ++TL+DVV+VVRADEAHHRDVNH+ASDIHYQGR+
Sbjct:   284 LKELDKGNIENVPAPAIAIDYWRLPADATLRDVVMVVRADEAHHRDVNHFASDIHYQGRE 343

Query:   242 LRESPAPLGYH 252
             L+E+PAP+GYH
Sbjct:   344 LKEAPAPIGYH 354

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=IGI;ISS;IDA

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0045333 "cellular respiration" evidence=IDA

GO:0009409 "response to cold" evidence=IMP

GO:0031930 "mitochondria-nucleus signaling pathway" evidence=IEP

TAIR|locus:2087882 AOX1B "alternative oxidase 1B" [Arabidopsis thaliana (taxid:3702)]

 Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
 Identities = 216/252 (85%), Positives = 237/252 (94%)

Query:     1 MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
             +IVSYWGV+  K+ K+DG+EWKW+CFRPWE Y++DL+IDLKKHH P+T  DK+A WTVKS
Sbjct:    74 LIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKSDLTIDLKKHHVPSTLPDKLAYWTVKS 133

Query:    61 LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
             LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGML+HCKSLRRFE SGGWIKALLEEAENE
Sbjct:   134 LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLVHCKSLRRFEQSGGWIKALLEEAENE 193

Query:   121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
             RMHLMTFMEVAKP WYERALV AVQG+FFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE
Sbjct:   194 RMHLMTFMEVAKPNWYERALVIAVQGIFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 253

Query:   181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
             FLKELD GNIENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYASDIHYQGR
Sbjct:   254 FLKELDNGNIENVPAPAIAIDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGR 313

Query:   241 QLRESPAPLGYH 252
             +L+E+PAP+GYH
Sbjct:   314 ELKEAPAPIGYH 325

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

UNIPROTKB|Q07185 AOX1 "Ubiquinol oxidase 1, mitochondrial" [Glycine max (taxid:3847)]

 Score = 1200 (427.5 bits), Expect = 5.1e-122, P = 5.1e-122
 Identities = 215/252 (85%), Positives = 232/252 (92%)

Query:     1 MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
             +IVSYWG++  K+ K DG+EWKWNCF PW  Y+ADLSIDL+KH  PTTF DKMA WTVK 
Sbjct:    70 VIVSYWGIQPSKITKKDGTEWKWNCFSPWGTYKADLSIDLEKHMPPTTFLDKMAFWTVKV 129

Query:    61 LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
             LR+PTD+FFQRRYGCRAMMLETVAAVPGMV GMLLHCKSLRRFEHSGGW KALLEEAENE
Sbjct:   130 LRYPTDVFFQRRYGCRAMMLETVAAVPGMVAGMLLHCKSLRRFEHSGGWFKALLEEAENE 189

Query:   121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
             RMHLMTFMEVAKPKWYERALV  VQGVFFNAYFLGYL+SPKFAHRM GYLEEEAIHSYTE
Sbjct:   190 RMHLMTFMEVAKPKWYERALVITVQGVFFNAYFLGYLLSPKFAHRMFGYLEEEAIHSYTE 249

Query:   181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
             FLKELDKGNIENVPAPAIA DYW+LPP STL+DVV+VVRADEAHHRDVNH+ASDIHYQGR
Sbjct:   250 FLKELDKGNIENVPAPAIAIDYWQLPPGSTLRDVVMVVRADEAHHRDVNHFASDIHYQGR 309

Query:   241 QLRESPAPLGYH 252
             +LRE+ AP+GYH
Sbjct:   310 ELREAAAPIGYH 321

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2089124 AOX1C "alternative oxidase 1C" [Arabidopsis thaliana (taxid:3702)]

 Score = 1190 (424.0 bits), Expect = 5.8e-121, P = 5.8e-121
 Identities = 211/252 (83%), Positives = 234/252 (92%)

Query:     1 MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
             +IVSYWGV+  K+ K+DG+EWKW+CFRPWE Y+ADL+IDLKKHH P+T  DK+A W VKS
Sbjct:    78 LIVSYWGVKPMKITKEDGTEWKWSCFRPWETYKADLTIDLKKHHVPSTLPDKIAYWMVKS 137

Query:    61 LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
             LRWPTDLFFQRRYGCRA+MLETVAAVPGMVGGML+H KSLRRFE SGGWIKALLEEAENE
Sbjct:   138 LRWPTDLFFQRRYGCRAIMLETVAAVPGMVGGMLMHFKSLRRFEQSGGWIKALLEEAENE 197

Query:   121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
             RMHLMTFMEVAKPKWYERALV +VQGVFFNAY +GY+ISPKFAHRMVGYLEEEAIHSYTE
Sbjct:   198 RMHLMTFMEVAKPKWYERALVISVQGVFFNAYLIGYIISPKFAHRMVGYLEEEAIHSYTE 257

Query:   181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
             FLKELD GNIENVPAPAIA DYWRL  ++TL+DVV+VVRADEAHHRDVNHYASDIHYQG 
Sbjct:   258 FLKELDNGNIENVPAPAIAVDYWRLEADATLRDVVMVVRADEAHHRDVNHYASDIHYQGH 317

Query:   241 QLRESPAPLGYH 252
             +L+E+PAP+GYH
Sbjct:   318 ELKEAPAPIGYH 329

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

UNIPROTKB|Q8W855 AOX1c "Alternative oxidase" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1109 (395.4 bits), Expect = 2.2e-112, P = 2.2e-112
 Identities = 197/249 (79%), Positives = 220/249 (88%)

Query:     4 SYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRW 63
             SYWG+EA K+   DG EWKW+CFRPWE Y  D +IDLKKHH P    DK+A WTVK+LR 
Sbjct:    97 SYWGIEASKLASKDGVEWKWSCFRPWETYSPDTTIDLKKHHEPKVLLDKVAYWTVKALRV 156

Query:    64 PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMH 123
             PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH +SLRRFEHSGGWI+ALLEEAENERMH
Sbjct:   157 PTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLRSLRRFEHSGGWIRALLEEAENERMH 216

Query:   124 LMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK 183
             LMTFMEVAKP+WYERALV AVQGVFFNAYFLGYL+SPK AHR+VGYLEEEAIHSYTE+LK
Sbjct:   217 LMTFMEVAKPRWYERALVLAVQGVFFNAYFLGYLLSPKLAHRVVGYLEEEAIHSYTEYLK 276

Query:   184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQLR 243
             +++ G IENVPAP IA DYWRLP  +TLKDVV+VVRADEAHHRDVNH+ASD+H+QG  L+
Sbjct:   277 DIEAGKIENVPAPPIAIDYWRLPAGATLKDVVVVVRADEAHHRDVNHFASDVHFQGMDLK 336

Query:   244 ESPAPLGYH 252
             + PAPL YH
Sbjct:   337 DIPAPLDYH 345

GO:0005739 "mitochondrion" evidence=IC

TAIR|locus:2028311 AOX1D "alternative oxidase 1D" [Arabidopsis thaliana (taxid:3702)]

 Score = 1051 (375.0 bits), Expect = 3.1e-106, P = 3.1e-106
 Identities = 180/252 (71%), Positives = 220/252 (87%)

Query:     1 MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKS 60
             +I +YWG+   K+ K DGS WKWNCF+PW++Y+ D+SID+ KHH P+ F+DK A WTV++
Sbjct:    67 VISTYWGIPPTKITKPDGSAWKWNCFQPWDSYKPDVSIDVTKHHKPSNFTDKFAYWTVQT 126

Query:    61 LRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENE 120
             L+ P  LFFQR++ C AM+LETVAAVPGMVGGMLLH KSLRRFEHSGGWIKALLEEAENE
Sbjct:   127 LKIPVQLFFQRKHMCHAMLLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENE 186

Query:   121 RMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE 180
             RMHLMTF+E+++PKWYERA+VF VQGVFFNAYFL Y+ISPK AHR+ GYLEEEA++SYTE
Sbjct:   187 RMHLMTFIELSQPKWYERAIVFTVQGVFFNAYFLAYVISPKLAHRITGYLEEEAVNSYTE 246

Query:   181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR 240
             FLK++D G  EN PAPAIA DYWRLP ++TL+DVV V+RADEAHHRD+NHYASDI ++G 
Sbjct:   247 FLKDIDAGKFENSPAPAIAIDYWRLPKDATLRDVVYVIRADEAHHRDINHYASDIQFKGH 306

Query:   241 QLRESPAPLGYH 252
             +L+E+PAP+GYH
Sbjct:   307 ELKEAPAPIGYH 318

GO:0005739 "mitochondrion" evidence=ISM

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2173353 AOX2 "alternative oxidase 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1047 (373.6 bits), Expect = 8.3e-106, P = 8.3e-106
 Identities = 187/253 (73%), Positives = 217/253 (85%)

Query:     2 IVSYWGVEAPK--VNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVK 59
             + SYWG+E  K  + + DGS+W WNCF PWE Y+A+LSIDLKKHH P   +DK+A   VK
Sbjct:   101 VPSYWGIETAKMKITRKDGSDWPWNCFMPWETYQANLSIDLKKHHVPKNIADKVAYRIVK 160

Query:    60 SLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAEN 119
              LR PTD+FFQRRYGCRAMMLETVAAVPGMVGGMLLH KS+R+FEHSGGWIKALLEEAEN
Sbjct:   161 LLRIPTDIFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSIRKFEHSGGWIKALLEEAEN 220

Query:   120 ERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYT 179
             ERMHLMT ME+ KPKWYER LV  VQG+FFN++F+ Y+ISP+ AHR+VGYLEEEAIHSYT
Sbjct:   221 ERMHLMTMMELVKPKWYERLLVMLVQGIFFNSFFVCYVISPRLAHRVVGYLEEEAIHSYT 280

Query:   180 EFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQG 239
             EFLK++D G IENV APAIA DYWRLP ++TLKDVV V+RADEAHHRDVNH+ASDI  QG
Sbjct:   281 EFLKDIDNGKIENVAAPAIAIDYWRLPKDATLKDVVTVIRADEAHHRDVNHFASDIRNQG 340

Query:   240 RQLRESPAPLGYH 252
             ++LRE+ AP+GYH
Sbjct:   341 KELREAAAPIGYH 353

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA;IDA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA;TAS

GO:0010230 "alternative respiration" evidence=ISS

ASPGD|ASPL0000047182 AN2099 [Emericella nidulans (taxid:162425)]

 Score = 494 (179.0 bits), Expect = 6.8e-51, Sum P(2) = 6.8e-51
 Identities = 92/159 (57%), Positives = 119/159 (74%)

Query:    76 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
             R + LE+VA VPGMVGGML H +SLRR +   GWI+ LLEEA NERMHL+TF+++A+P W
Sbjct:   152 RFVFLESVAGVPGMVGGMLRHLRSLRRMKRDNGWIETLLEEAYNERMHLLTFLKMAEPGW 211

Query:   136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI---EN 192
             + R +V   QGVFFN +FL YLISP+  HR VGYLEEEA+ +YT  +K+L+ G +   E 
Sbjct:   212 FMRLMVLGAQGVFFNGFFLSYLISPRTCHRFVGYLEEEAVLTYTRAIKDLESGRLPHWEK 271

Query:   193 VPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNH 230
             + AP IA  YW++P  N T+KD++L VRADEA HR+VNH
Sbjct:   272 LEAPEIAVKYWKMPEGNRTMKDLLLYVRADEAKHREVNH 310

GO:0005739 "mitochondrion" evidence=IDA

GO:0009916 "alternative oxidase activity" evidence=IEA

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0010230 "alternative respiration" evidence=IEA

GO:0034599 "cellular response to oxidative stress" evidence=IEA

UNIPROTKB|O93788 AOX1 "Alternative oxidase, mitochondrial" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 457 (165.9 bits), Expect = 1.4e-46, Sum P(2) = 1.4e-46
 Identities = 84/167 (50%), Positives = 118/167 (70%)

Query:    76 RAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKW 135
             R + LE++AAVPGMV GML H  SLRR +   GWI+ LLEEA NERMHL+TF+++ +P W
Sbjct:   151 RFIFLESIAAVPGMVAGMLRHLHSLRRLKRDNGWIETLLEEAYNERMHLLTFLKMCEPGW 210

Query:   136 YERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIEN--- 192
               + L+   QGV+FNA F+ YLISPK  HR VGYLEEEA+H+YT  ++EL++G++     
Sbjct:   211 LMKILIIGAQGVYFNAMFVAYLISPKICHRFVGYLEEEAVHTYTRSIEELERGDLPKWSD 270

Query:   193 --VPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASDIH 236
                  P IA  YW +P  + T++D++L +RADEA+HR V+H   +++
Sbjct:   271 PKFQVPEIAVSYWGMPEGHRTMRDLLLYIRADEANHRGVHHTLGNLN 317

GO:0043581 "mycelium development" evidence=IEP

DICTYBASE|DDB_G0280819 aoxA [Dictyostelium discoideum (taxid:44689)]

 Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
 Identities = 91/187 (48%), Positives = 133/187 (71%)

Query:    48 TFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSG 107
             + SD  A ++V  LR  ++LFF+ ++   A++LETVAAVPG+V GM LH K+LR  + S 
Sbjct:   102 SLSDNFAKFSVLFLRKFSNLFFKEKFLHYAIVLETVAAVPGLVAGMFLHLKTLRNMQ-SN 160

Query:   108 GWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMV 167
              WIK L++E ENERMHL++FME+ KP   ER +V   Q +++N + + Y++SPK AHR  
Sbjct:   161 NWIKILMDEMENERMHLLSFMELTKPTLLERGMVAVTQAIYWNLFLVFYVLSPKTAHRFT 220

Query:   168 GYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRD 227
             GYLEE+A+ +YT  L+++D G + N  AP IA +YW LP ++TL+D++LV+R DE+ HR 
Sbjct:   221 GYLEEQAVVTYTHMLEDIDSGKVPNYKAPQIAIEYWGLPEDATLRDLILVIRQDESDHRL 280

Query:   228 VNHYASD 234
             VNH  S+
Sbjct:   281 VNHEISN 287

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0009916 "alternative oxidase activity" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41224	AOX1_TOBAC	1, ., -, ., -, ., -	0.8645	0.9960	0.7110	N/A	no
Q07185	AOX1_SOYBN	1, ., -, ., -, ., -	0.8531	1.0	0.7850	yes	no
P22185	AOX1_TYPVN	1, ., -, ., -, ., -	0.8087	0.9960	0.7191	N/A	no
Q39219	AOX1A_ARATH	1, ., -, ., -, ., -	0.8844	0.9960	0.7090	yes	no
Q40578	AOX2_TOBAC	1, ., -, ., -, ., -	0.8645	0.9960	0.8451	N/A	no
Q40294	AOX1_MANIN	1, ., -, ., -, ., -	0.7420	1.0	0.7924	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
PLN02478	328	PLN02478, PLN02478, alternative oxidase	0.0
pfam01786	214	pfam01786, AOX, Alternative oxidase	1e-119
cd01053	168	cd01053, AOX, Alternative oxidase, ferritin-like d	9e-97

>gnl|CDD|215265 PLN02478, PLN02478, alternative oxidase

 Score =  541 bits (1394), Expect = 0.0
 Identities = 217/251 (86%), Positives = 234/251 (93%)

Query: 2   IVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSL 61
           IVSYWG+E  K+ K+DG+EWKWNCFRPWE Y+ADLSIDLKKHH P T  DK+A WTVKSL
Sbjct: 78  IVSYWGIEPAKITKEDGTEWKWNCFRPWETYKADLSIDLKKHHVPKTLLDKIAYWTVKSL 137

Query: 62  RWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENER 121
           R PTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLH KSLRRFEHSGGWIKALLEEAENER
Sbjct: 138 RVPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENER 197

Query: 122 MHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF 181
           MHLMTFMEVAKPKWYERALV AVQGVFFNAYFLGYLISPKFAHR+VGYLEEEAIHSYTEF
Sbjct: 198 MHLMTFMEVAKPKWYERALVIAVQGVFFNAYFLGYLISPKFAHRIVGYLEEEAIHSYTEF 257

Query: 182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGRQ 241
           LK+LD G IENVPAPAIA DYWRLP ++TL+DVV VVRADEAHHRDVNH+ASDIHYQG++
Sbjct: 258 LKDLDAGKIENVPAPAIAIDYWRLPADATLRDVVTVVRADEAHHRDVNHFASDIHYQGKE 317

Query: 242 LRESPAPLGYH 252
           L+E+PAP+GYH
Sbjct: 318 LKEAPAPIGYH 328

Length = 328

>gnl|CDD|216699 pfam01786, AOX, Alternative oxidase

 Score =  339 bits (873), Expect = e-119
 Identities = 125/214 (58%), Positives = 155/214 (72%), Gaps = 9/214 (4%)

Query: 30  EAYEADLSIDLK-KHHAPTTFSDKMALWTVKSLRWPTDL-------FFQRRYGCRAMMLE 81
             Y  D   ++K  H  P T  DK+A + VK LRW  DL         + R+  RA+ LE
Sbjct: 1   PIYTEDELENVKVTHREPKTLGDKVAFFLVKFLRWCFDLVTGYRYEMTEERWLHRAIFLE 60

Query: 82  TVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALV 141
           TVA VPGMVGGML H +SLRR +  GGWI+ LLEEAENERMHL+TF+E+ KP W+ER LV
Sbjct: 61  TVAGVPGMVGGMLRHLRSLRRLKRDGGWIETLLEEAENERMHLLTFLELGKPGWFERFLV 120

Query: 142 FAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATD 201
              QGVFFNA+FL YL+SP+ AHR VGYLEEEA+ +YT FLK+++ G + NVPAP IA D
Sbjct: 121 LLAQGVFFNAFFLLYLLSPRMAHRFVGYLEEEAVVTYTHFLKDIEAGKLPNVPAPEIAID 180

Query: 202 YWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASD 234
           YWRLP  ++TL+DV+LV+RADEAHHRDVNH  ++
Sbjct: 181 YWRLPELDATLRDVILVIRADEAHHRDVNHTLAN 214

The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transfered directly from reduced ubiquinol to oxygen forming water. This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process. In rice the transcript levels of the alternative oxidase are increased by low temperature. Length = 214

>gnl|CDD|153112 cd01053, AOX, Alternative oxidase, ferritin-like diiron-binding domain

 Score =  280 bits (718), Expect = 9e-97
 Identities = 97/168 (57%), Positives = 122/168 (72%)

Query: 69  FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFM 128
           ++ R+  R + LETVA VPGMV GMLLH  SLR     GGWIK LLEEAENERMHL+ F 
Sbjct: 1   YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFE 60

Query: 129 EVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKG 188
           E+  P W+ R  V   Q VF+NAYFL YLISP+ AHR VGYLEEEA+ +YTEFLK++++G
Sbjct: 61  ELGGPGWWFRRFVAQHQAVFYNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEG 120

Query: 189 NIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIH 236
              ++PAP IA +Y+RL  ++TL DV + +RADEA HR VNH  +D+ 
Sbjct: 121 LKPDLPAPEIAIEYYRLGEDATLYDVFVAIRADEAEHRKVNHACADLG 168

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular disulfide bridge between monomeric subunits. The enzyme is non-proton-motive and does not contribute to the conservation of energy. The heat that dissipates from AOX activity is used in thermogenic plants to volatilize primary amines to attract pollinating insects. Other functions have been proposed: i) that the alternative oxidase allows Krebs-cycle turnover when the energy charge of the cell is high, and ii) that the enzyme protects against oxidative stress. The expression of AOX is induced when plants are exposed to a variety of stresses including chilling, pathogen attack, senescence and fruit ripening. Length = 168

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PLN02478	328	alternative oxidase	100.0
PF01786	207	AOX: Alternative oxidase; InterPro: IPR002680 The	100.0
cd01053	168	AOX Alternative oxidase, ferritin-like diiron-bind	100.0
cd01042	165	DMQH Demethoxyubiquinone hydroxylase, ferritin-lik	97.86
PF03232	172	COQ7: Ubiquinone biosynthesis protein COQ7; InterP	97.78
COG2941	204	CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzym	96.96
cd07908	154	Mn_catalase_like Manganese catalase-like protein,	96.72
cd01045	139	Ferritin_like_AB Uncharacterized family of ferriti	95.87
cd01051	156	Mn_catalase Manganese catalase, ferritin-like diir	94.39
cd01044	125	Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin	93.74
cd00657	130	Ferritin_like Ferritin-like superfamily of diiron-	93.6
KOG4061	217	consensus DMQ mono-oxygenase/Ubiquinone biosynthes	86.41
PRK13456	186	DNA protection protein DPS; Provisional	83.39

>PLN02478 alternative oxidase

Probab=100.00  E-value=5.8e-116  Score=803.92  Aligned_cols=252  Identities=86%  Similarity=1.459  Sum_probs=250.4

Q ss_pred             CCcceeeecCCCCCCCCCCccccccccccccccchhhhccccCCCCCccchHHHHHHHHHhhhcccccccccccceeeee
Q 025472            1 MIVSYWGVEAPKVNKDDGSEWKWNCFRPWEAYEADLSIDLKKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMML   80 (252)
Q Consensus         1 ~~~~ywg~~~~k~~~~DGt~w~W~~f~p~~tY~~~~~~~~~~h~~P~~~~D~~A~~~vk~lr~~~D~~~~~r~~~R~~~L   80 (252)
                      +++|||||.|+|+++||||+|+|+||+||++|+++..+++.+|++|++++||+|+++||+||+++|+||++||++|++||
T Consensus        77 ~~~~ywg~~~~~~~~~dg~~~~w~~~~p~~~y~~~~~~~~~~H~~P~~~~Dk~A~~~Vk~lR~~~D~~f~~R~~~R~ifL  156 (328)
T PLN02478         77 AIVSYWGIEPAKITKEDGTEWKWNCFRPWETYKADLSIDLKKHHVPKTLLDKIAYWTVKSLRVPTDLFFQRRYGCRAMML  156 (328)
T ss_pred             eeeeecccCCcccccCCCCCCCccCcCCCccccHhhhchhhcCCCCCchHHHHHHHHHHHHHHHHHHHhhcchhhHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ehhccCChhHHHHHHHhhhhhccccCcchHHHHHHHHHhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHhCh
Q 025472           81 ETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISP  160 (252)
Q Consensus        81 ETVA~VPgmv~~~~~Hl~sLr~~~rd~gwI~~lleEaeNErmHLl~~~el~~p~~~~R~lv~~~Q~vf~~~~~~~YlvsP  160 (252)
                      ||||||||||+||++||+|||+|+||+|||++||||||||||||||||++++|+|++|++++++|++|||+||++||+||
T Consensus       157 ETVA~VPGmV~gmlrHL~SLRr~krd~gWIrtLLeEAeNERMHLLtf~~l~~p~w~eR~lv~~aQgvf~~~ff~~YLiSP  236 (328)
T PLN02478        157 ETVAAVPGMVGGMLLHLKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVIAVQGVFFNAYFLGYLISP  236 (328)
T ss_pred             HHHhcCchHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhhccccccccc
Q 025472          161 KFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR  240 (252)
Q Consensus       161 r~ahrfvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vNH~~ad~~~~~~  240 (252)
                      |+|||||||||||||+|||+||++||+|+|+|+|||+||++||+||+++||||||++||+||++||+|||++||++.||+
T Consensus       237 r~aHRfvGYLEEEAV~TYT~~L~eid~G~l~n~pAP~IAi~YW~LP~~atLrDVi~~IRaDEa~HRdVNH~~sd~~~~~~  316 (328)
T PLN02478        237 KFAHRIVGYLEEEAIHSYTEFLKDLDAGKIENVPAPAIAIDYWRLPADATLRDVVTVVRADEAHHRDVNHFASDIHYQGK  316 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCCCCChHHHHHhCCCCCCcHHHHHHHHHhhhhhhhccCcchhhhhhccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCCCCC
Q 025472          241 QLRESPAPLGYH  252 (252)
Q Consensus       241 ~~~~~~~~~~~~  252 (252)
                      +++++|+|+|||
T Consensus       317 ~~~~~~~~~~~~  328 (328)
T PLN02478        317 ELKEAPAPIGYH  328 (328)
T ss_pred             ccCCCCCCCCCC
Confidence            999999999999

>PF01786 AOX: Alternative oxidase; InterPro: IPR002680 The alternative oxidase is used as a second terminal oxidase in the mitochondria, electrons are transferred directly from reduced ubiquinol to oxygen forming water []

Probab=100.00  E-value=5.2e-89  Score=601.38  Aligned_cols=203  Identities=59%  Similarity=1.037  Sum_probs=197.9

Q ss_pred             ccchhhhcc-ccCCCCCccchHHHHHHHHHhhhcccccccccccceeeeeehhccCChhHHHHHHHhhhhhccccCcchH
Q 025472           32 YEADLSIDL-KKHHAPTTFSDKMALWTVKSLRWPTDLFFQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWI  110 (252)
Q Consensus        32 Y~~~~~~~~-~~h~~P~~~~D~~A~~~vk~lr~~~D~~~~~r~~~R~~~LETVA~VPgmv~~~~~Hl~sLr~~~rd~gwI  110 (252)
                      |+.+...++ .+|++|++++|++|+++||+||+++|++|++||++|++||||||||||||++|++||+|||+|+||+|||
T Consensus         3 ~~~~~~~~v~~~h~~p~~~~d~~A~~~v~~lr~~~D~~~~~r~~~R~~~LEtVA~VPg~v~~~~~Hl~slr~~~rd~g~I   82 (207)
T PF01786_consen    3 YTEEELESVQVTHREPKTFSDRVAYGIVKFLRWFFDLLFEKRWLHRFIFLETVAGVPGMVGGMVRHLRSLRRMKRDGGWI   82 (207)
T ss_pred             CCHHHHhhcccccCCCCcHHHHHHHHHHHHHHHHHHHhccccchhheeeeeecccCChHHHHHHHHHHHHhCCCCCCcHH
Confidence            556555555 5999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCC
Q 025472          111 KALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNI  190 (252)
Q Consensus       111 ~~lleEaeNErmHLl~~~el~~p~~~~R~lv~~~Q~vf~~~~~~~YlvsPr~ahrfvgylEEeAv~tYt~~l~~id~g~l  190 (252)
                      ++|+|||||||||||||+++++|+|++|++++++|++|||+|+++|++|||+|||||||||||||+|||+||+|||+|+|
T Consensus        83 ~~lleEaeNErmHLli~~~l~~p~~~~R~lv~~~q~vf~~~~~~~Yl~sPr~ahrfvgylEeeAv~tYt~~l~di~~g~l  162 (207)
T PF01786_consen   83 KTLLEEAENERMHLLIFEELGKPSWFDRFLVLHAQGVFYNIFFLLYLVSPRTAHRFVGYLEEEAVHTYTEFLEDIDEGKL  162 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHcccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHhhCCCC-CCCHHHHHHHHHhhhhHhHhhhhhccc
Q 025472          191 ENVPAPAIATDYWRLPP-NSTLKDVVLVVRADEAHHRDVNHYASD  234 (252)
Q Consensus       191 ~~~paP~iA~~Yw~Lp~-~atlrDvi~~IRaDEa~Hr~vNH~~ad  234 (252)
                      +|+|||+||++||+||+ ++||||||++||+||++||++||++||
T Consensus       163 ~~~paP~iAi~Yw~l~~~~atlrDvi~~IRaDEa~Hr~vNH~~a~  207 (207)
T PF01786_consen  163 PNMPAPEIAIDYWGLPELDATLRDVILAIRADEAEHRDVNHTLAD  207 (207)
T ss_pred             CCCCCCHHHHHHhCCCccCchHHHHHHHHHhhHHHHHHhhhhhcC
Confidence            99999999999999999 999999999999999999999999997

This is not coupled to ATP synthesis and is not inhibited by cyanide, this pathway is a single step process []. In Oryza sativa (Rice) the transcript levels of the alternative oxidase are increased by low temperature []. It has been predicted to contain a coupled diiron centre on the basis of a conserved sequence motif consisting of the proposed iron ligands, four Glu and two His residues []. The EPR study of Arabidopsis thaliana (Mouse-ear cress) alternative oxidase AOX1a shows that the enzyme contains a hydroxo-bridged mixed-valent Fe(II)/Fe(III) binuclear iron centre []. A catalytic cycle has been proposed that involves diiron centre and at least one transient protein-derived radical, most probably an invariant Tyr residue [].; GO: 0007585 respiratory gaseous exchange, 0055114 oxidation-reduction process, 0005740 mitochondrial envelope

>cd01053 AOX Alternative oxidase, ferritin-like diiron-binding domain

Probab=100.00  E-value=2.6e-82  Score=542.77  Aligned_cols=167  Identities=58%  Similarity=0.979  Sum_probs=165.3

Q ss_pred             ccccccceeeeeehhccCChhHHHHHHHhhhhhccccCcchHHHHHHHHHhHHHHHHHHHHHhCCchHHHHHHHHHHHHH
Q 025472           69 FQRRYGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVF  148 (252)
Q Consensus        69 ~~~r~~~R~~~LETVA~VPgmv~~~~~Hl~sLr~~~rd~gwI~~lleEaeNErmHLl~~~el~~p~~~~R~lv~~~Q~vf  148 (252)
                      |++||++||+||||||||||||++|++||+|||+|+||+||||+|||||||||||||||+++++|++++|.++..+|++|
T Consensus         1 ~~~r~~~R~~~LEtVA~vPgmv~~~~~HL~slr~~~rd~~wi~~lleEaeNErmHLltf~~l~~p~~~~r~~v~~~q~vf   80 (168)
T cd01053           1 YEDRWLARFIFLETVARVPGMVAGMLLHLYSLRGMWRDGGWIKTLLEEAENERMHLLIFEELGGPGWWFRRFVAQHQAVF   80 (168)
T ss_pred             CCCcceehhhhhhHhccCcHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 025472          149 FNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV  228 (252)
Q Consensus       149 ~~~~~~~YlvsPr~ahrfvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~v  228 (252)
                      ||+|+++|++|||+|||||||||||||+|||+||++||+|+++|+|||+||++||+||+++||||||++||+||++||+|
T Consensus        81 y~~~~~~YlisPr~ahrfvgylEEeAV~TYt~~L~~id~g~~~~~paP~iAi~Yw~l~~~atl~Dvi~~IR~DEa~Hr~v  160 (168)
T cd01053          81 YNAYFLLYLISPRLAHRFVGYLEEEAVDTYTEFLKDIEEGLKPDLPAPEIAIEYYRLGEDATLYDVFVAIRADEAEHRKV  160 (168)
T ss_pred             HHHHHHHHHhhHHHHHHHHHhhhHHHHHHHHHHHHHhhccccCCCCCCHHHHHHhCCCCCCcHHHHHHHHHhhHHhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhcccc
Q 025472          229 NHYASDI  235 (252)
Q Consensus       229 NH~~ad~  235 (252)
                      ||++||+
T Consensus       161 nh~~~~~  167 (168)
T cd01053         161 NHACADL  167 (168)
T ss_pred             HHHhhcC
Confidence            9999986

Alternative oxidase (AOX) is a mitochondrial ubiquinol oxidase found in plants and some fungi and protists. AOX is a member of the ferritin-like diiron-carboxylate superfamily. The plant mitochondrial protein alternative oxidase catalyses dioxygen dependent ubiquinol oxidation to yield ubiquinone and water. AOX is a cyanide-resistant, salicylhydroxamic acid-sensitive oxidase that transfers electrons from ubiquinol to oxygen, bypassing the cytochrome chain. AOX has been proposed to contain a hydroxo-bridged diiron center within a four-helix bundle and a proximal redox-active tyrosine residue. AOX is proposed to be peripherally associated with the matrix side of the inner mitochondrial membrane. Fungal and protozoan AOXs generally exist as monomers. In plants, AOX is dimeric. Pyruvate is an allosteric activator of plant AOX involved in the reversible inactivation of the enzyme though the formation of an intermolecular

>cd01042 DMQH Demethoxyubiquinone hydroxylase, ferritin-like diiron-binding domain

Probab=97.86  E-value=0.00021  Score=61.89  Aligned_cols=102  Identities=25%  Similarity=0.324  Sum_probs=79.4

Q ss_pred             chHHHHHHH-HHhHHHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHH
Q 025472          108 GWIKALLEE-AENERMHLMTFMEVA-----KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEF  181 (252)
Q Consensus       108 gwI~~lleE-aeNErmHLl~~~el~-----~p~~~~R~lv~~~Q~vf~~~~~~~YlvsPr~ahrfvgylEEeAv~tYt~~  181 (252)
                      .-++..++| ++.|.-||..|.+..     +|+++--+.-.    .=|.+-++.=++.++.++-|+.-+|+....-|.+-
T Consensus        29 ~~~~~~l~~~~~~E~~Hl~~f~~~i~~~~~rps~l~PlW~~----~gf~lG~~tal~G~~~a~~~~~avE~~V~~Hy~~q  104 (165)
T cd01042          29 PAVRPLIKEMLDEEKDHLAWFEELLPELGVRPSLLLPLWYV----AGFALGALTALLGKKAAMACTAAVETVVEEHYNDQ  104 (165)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHH----HHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHH
Confidence            345555555 788999999998885     57766554422    22445666778899999999999999999999999


Q ss_pred             HHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhh
Q 025472          182 LKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHY  231 (252)
Q Consensus       182 l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vNH~  231 (252)
                      |+++..-                  .|..+++.|..+|+||.+|++.--.
T Consensus       105 l~~L~~~------------------~d~~l~~~l~~~r~DE~~H~d~A~~  136 (165)
T cd01042         105 LRELPAQ------------------PDKELRAIIEQFRDDELEHADIAEE  136 (165)
T ss_pred             HHHhhcc------------------CCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9998321                  2688999999999999999987543

Demethoxyubiquinone hydroxylases (DMQH) are members of the ferritin-like, diiron-carboxylate family which are present in eukaryotes (the CLK-1/CAT5 family) and prokaryotes (the Coq7 family). DMQH participates in one of the last steps of ubiquinone biosysnthesis and is responsible for DMQ hydroxylation, resulting in the formation of hydroxyubiquinone, a precursor of ubiquinone. CLK-1 is a mitochondrial inner membrane protein and Coq7 is a proposed interfacial integral membrane protein. Mutations in the Caenorhabditis elegans gene clk-1 affect biological timing and extend longevity. The conserved residues of a diiron center are present in this domain.

>PF03232 COQ7: Ubiquinone biosynthesis protein COQ7; InterPro: IPR011566 Coq7 (also known as Clk-1) is a di-iron carboxylate protein occuring in both prokaryotes and eukaryotes that is essential for ubiquinone biosynthesis [, ]

Probab=97.78  E-value=0.00036  Score=60.77  Aligned_cols=102  Identities=25%  Similarity=0.311  Sum_probs=79.0

Q ss_pred             HHHHHHH-HHhHHHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHH
Q 025472          110 IKALLEE-AENERMHLMTFMEVA-----KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLK  183 (252)
Q Consensus       110 I~~lleE-aeNErmHLl~~~el~-----~p~~~~R~lv~~~Q~vf~~~~~~~YlvsPr~ahrfvgylEEeAv~tYt~~l~  183 (252)
                      ++..+.| ++.|.-||..|.++.     .|+++.-+.-    +.-|.+-++.=++.++.+.-++.-+|+....-|.+-|+
T Consensus        34 ~~~~l~~~~~~E~~Hl~~f~~~l~~~~~RpS~l~Plw~----~~g~~LG~~tal~G~~~~~a~t~avE~~V~~Hy~~Ql~  109 (172)
T PF03232_consen   34 LRPFLKEMAEEEKDHLAWFEQLLPELRVRPSLLNPLWY----VAGFALGALTALLGDKAAMACTAAVETVVEEHYNDQLR  109 (172)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHcCCCCcHHHHHHH----HHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444 668999999999886     4777655543    22245566678999999999999999999999999999


Q ss_pred             HhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhh
Q 025472          184 ELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH  230 (252)
Q Consensus       184 ~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vNH  230 (252)
                      ++....               .++|..++++|..+|+||.+|++.--
T Consensus       110 ~L~~~~---------------~~~d~~l~~~i~~~r~DE~~H~d~A~  141 (172)
T PF03232_consen  110 ELPAMG---------------EEEDPELRAIIEQFRDDELEHRDTAI  141 (172)
T ss_pred             HHHhcc---------------ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            983211               13456799999999999999998653

It has been implicated in the aging process as mutations in the Caenorhabditis elegans gene lead to increased lifespan []. Coq7 is a membrane-bound protein that functions as a monooxygenase to hydroxylate demethoxyubiquinone (2-methoxy-5-methyl-6-polyprenyl-1,4-benzoquinone) in the penultimate step of ubiquinone biosynthesis []. Biochemical studies indicate that NADH can serve directly as a reductant for catalytic activation of dioxygen and substrate oxidation by the enzyme, with no requirement for an additional reductase protein component []. This direct reaction with NADH is so far unique amongst members of the di-iron carboxylate protein family. This entry is specific for the bacterial Coq7 proteins.; GO: 0006744 ubiquinone biosynthetic process, 0055114 oxidation-reduction process

>COG2941 CAT5 Ubiquinone biosynthesis protein COQ7 [Coenzyme metabolism]

Probab=96.96  E-value=0.0092  Score=53.30  Aligned_cols=97  Identities=24%  Similarity=0.197  Sum_probs=74.1

Q ss_pred             HHHHHHHhHHHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHHHhc
Q 025472          112 ALLEEAENERMHLMTFMEVA-----KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELD  186 (252)
Q Consensus       112 ~lleEaeNErmHLl~~~el~-----~p~~~~R~lv~~~Q~vf~~~~~~~YlvsPr~ahrfvgylEEeAv~tYt~~l~~id  186 (252)
                      .+.|-++.|-.||-+|.+..     .|+++--+---    .=|.+-.+.=|+++++|.-|++-.|+.-..-|.+-|+.+.
T Consensus        75 ~l~em~d~E~~HL~~f~~~l~e~~vRPsll~P~W~~----~~FalGA~a~Llgdk~am~~teavE~vIe~Hy~~ql~~L~  150 (204)
T COG2941          75 QLKEMADEEIDHLAWFEQRLLELGVRPSLLNPLWYA----AAFALGAGAGLLGDKAAMGFTEAVETVIEKHYDGQLRELP  150 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHH----HHHHHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34445677889999988774     58765543321    1134455688999999999999999999999999998872


Q ss_pred             CCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhh
Q 025472          187 KGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHY  231 (252)
Q Consensus       187 ~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vNH~  231 (252)
                                         ..|+.++--+...|.||..|.+.--.
T Consensus       151 -------------------~~d~~lr~~l~qfR~DE~eH~d~Ai~  176 (204)
T COG2941         151 -------------------NLDAELRAILAQFRDDELEHLDNAIA  176 (204)
T ss_pred             -------------------hccHHHHHHHHHHhhHHHHHHHHHHH
Confidence                               13568999999999999999886443

>cd07908 Mn_catalase_like Manganese catalase-like protein, ferritin-like diiron-binding domain

Probab=96.72  E-value=0.0045  Score=51.33  Aligned_cols=126  Identities=16%  Similarity=0.135  Sum_probs=89.1

Q ss_pred             eeehhccCChhHHHHHHHhhhhhccccCcchH-HHHHHHHHhHHHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHHH
Q 025472           79 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWI-KALLEEAENERMHLMTFMEVA-----KPKWYERALVFAVQGVFFNAY  152 (252)
Q Consensus        79 ~LETVA~VPgmv~~~~~Hl~sLr~~~rd~gwI-~~lleEaeNErmHLl~~~el~-----~p~~~~R~lv~~~Q~vf~~~~  152 (252)
                      ++|-++|.-|=-.++.+.++.....+....-+ +.+...|.-|.-|..++.++.     +|.+...+..   .+.++..-
T Consensus        18 ~~~~~~g~~~E~~ai~~Y~y~~~~~~~~~~~~k~~f~~lA~eE~~H~~~l~~~i~~lgg~p~~~~~~~~---~~~~~~~~   94 (154)
T cd07908          18 LLDDYAGTNSELTAISQYIYQHLISEEKYPEIAETFLGIAIVEMHHLEILGQLIVLLGGDPRYRSSSSD---KFTYWTGK   94 (154)
T ss_pred             HHHHhCCcchHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhccc---cCCcCCcc
Confidence            56677777777788888888877666533334 456677999999999998883     4654332111   11111111


Q ss_pred             HHHHHhChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 025472          153 FLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV  228 (252)
Q Consensus       153 ~~~YlvsPr~ahrfvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~v  228 (252)
                      .+...-++..+.++.--+|+.|+..|.+.++.+                     +|...++++..|.+||..|.+.
T Consensus        95 ~~~~~~~~~~~L~~~~~~E~~ai~~Y~~~~~~~---------------------~d~~~r~ll~~I~~eE~~H~~~  149 (154)
T cd07908          95 YVNYGESIKEMLKLDIASEKAAIAKYKRQAETI---------------------KDPYIRALLNRIILDEKLHIKI  149 (154)
T ss_pred             ccCCccCHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHHHHHHHH
Confidence            112334667799999999999999999999864                     3578999999999999999764

This uncharacterized bacterial protein family has a ferritin-like domain similar to that of the manganese catalase protein of Lactobacillus plantarum and the bll3758 protein of Bradyrhizobium japonicum. Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterio

>cd01045 Ferritin_like_AB Uncharacterized family of ferritin-like proteins found in archaea and bacteria

Probab=95.87  E-value=0.33  Score=37.58  Aligned_cols=99  Identities=22%  Similarity=0.203  Sum_probs=67.0

Q ss_pred             hHHH-HHHHHHhHHHHHHHHHHHhC-------CchHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHH
Q 025472          109 WIKA-LLEEAENERMHLMTFMEVAK-------PKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE  180 (252)
Q Consensus       109 wI~~-lleEaeNErmHLl~~~el~~-------p~~~~R~lv~~~Q~vf~~~~~~~YlvsPr~ahrfvgylEEeAv~tYt~  180 (252)
                      -++. +..-|..|+.|..++.++..       |..-............+..-......+++.+-+..--+|..|+..|.+
T Consensus        28 ~~~~~~~~la~eE~~H~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~E~~~~~~Y~~  107 (139)
T cd01045          28 ELKKLFEELAEEEKEHAERLEELYEKLFGEELPELEPEDYKEEVEEEPEFKKALESLMDPLEALRLAIEIEKDAIEFYEE  107 (139)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcccHHHHHHHHhhhhhHHHHHHhccCHHHHHHHHHHHHHHHHHHHHH
Confidence            3554 45569999999999988841       222111111011111111123455667788999999999999999999


Q ss_pred             HHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 025472          181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV  228 (252)
Q Consensus       181 ~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~v  228 (252)
                      +++.+                     .|...++++..|..||..|...
T Consensus       108 ~~~~~---------------------~d~~~~~~~~~l~~~E~~H~~~  134 (139)
T cd01045         108 LAEKA---------------------EDPEVKKLFEELAEEERGHLRL  134 (139)
T ss_pred             HHHHc---------------------CCHHHHHHHHHHHHHHHHHHHH
Confidence            99876                     2357899999999999999754

Ferritin-like domain found in archaea and bacteria (Ferritin_like_AB). This uncharacterized domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins whose function is unknown. This family includes unknown or hypothetical proteins which were sequenced from mostly anaerobic or microaerophilic metal-metabolizing and/or nitrogen-fixing microbes. The family includes sequences from ferric-, sulfate-, and arsenic-reducing bacteria, Geobacter, Magnetospirillum, Desulfovibrio, and Desulfitobacterium. Also included are several nitrogen-fixing endosymbiotic bacteria, Rhizobium, Mesorhizobium, and Bradyrhizobium; also phototrophic purple nonsulfur bacteria, Rhodobacter and Rhodopseudomonas, as well as, obligate thermophiles, Thermotoga, Thermoanaerobacter, and Pyrococcus. The conserved residues of a diiron center are present in this uncharacterized domain.

>cd01051 Mn_catalase Manganese catalase, ferritin-like diiron-binding domain

Probab=94.39  E-value=0.12  Score=44.06  Aligned_cols=120  Identities=18%  Similarity=0.159  Sum_probs=79.2

Q ss_pred             eeehhccCChhHHHHHHHhhhhhccccCcchHHHHHHHHHhHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHh
Q 025472           79 MLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAKPKWYERALVFAVQGVFFNAYFLGYLI  158 (252)
Q Consensus        79 ~LETVA~VPgmv~~~~~Hl~sLr~~~rd~gwI~~lleEaeNErmHLl~~~el~~p~~~~R~lv~~~Q~vf~~~~~~~Ylv  158 (252)
                      ++|-++|.-|=..++++-++.-..++.+...-..+++.|-.|..|+.++.++-.-     +.. -..+..|   ...|+.
T Consensus        25 l~~~~gG~~gEl~ai~qYl~q~~~~~~~~~~~d~l~~ia~eEm~H~e~la~~I~~-----Lg~-~~~g~pw---~~~yv~   95 (156)
T cd01051          25 LQEQLGGAFGELSAAMQYLFQSFNFREDPKYRDLLLDIGTEELSHLEMVATLIAM-----LLK-DSQGVPW---TAAYIQ   95 (156)
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HcC-CCCCCcC---CCcccC
Confidence            6677777777777777777776666433344456778899999999987776210     000 0011111   223322


Q ss_pred             ---ChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 025472          159 ---SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV  228 (252)
Q Consensus       159 ---sPr~ahrfvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~v  228 (252)
                         .+...-+-+=-.|+.|..+|.+.++.+                     +|.+.+|++..|++||..|.+.
T Consensus        96 ~~~d~~~~L~~ni~aE~~Ai~~Y~~l~~~~---------------------~Dp~v~~~l~~I~~rE~~H~~~  147 (156)
T cd01051          96 SSGNLVADLRSNIAAESRARLTYERLYEMT---------------------DDPGVKDTLSFLLVREIVHQNA  147 (156)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHc---------------------CCHHHHHHHHHHHHHHHHHHHH
Confidence               223333333445999999999999987                     3688999999999999999763

Manganese (Mn) catalase is a member of a broad superfamily of ferritin-like diiron enzymes. While many diiron enzymes catalyze dioxygen-dependent reactions, manganese catalase performs peroxide-dependent oxidation-reduction. Catalases are important antioxidant metalloenzymes that catalyze disproportionation of hydrogen peroxide, forming dioxygen and water. Manganese catalase, a nonheme type II catalase, contains a binuclear manganese cluster that catalyzes the redox dismutation of hydrogen peroxide, interconverting between dimanganese(II) [(2,2)] and dimanganese(III) [(3,3)] oxidation states during turnover. Mn catalases are found in a broad range of microorganisms in microaerophilic environments, including the mesophilic lactic acid bacteria (e.g., Lactobacillus plantarum) and bacterial and archaeal thermophiles (e.g., Thermus thermophilus and Pyrobaculum caldifontis). L. plantarum and T. thermophilus holoenz

>cd01044 Ferritin_CCC1_N Ferritin-CCC1, N-terminal ferritin-like diiron-binding domain

Probab=93.74  E-value=1.1  Score=36.16  Aligned_cols=93  Identities=28%  Similarity=0.435  Sum_probs=63.8

Q ss_pred             hhccccCcchHHH-HHHHHHhHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhh
Q 025472          100 LRRFEHSGGWIKA-LLEEAENERMHLMTFMEVAK-----PKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEE  173 (252)
Q Consensus       100 Lr~~~rd~gwI~~-lleEaeNErmHLl~~~el~~-----p~~~~R~lv~~~Q~vf~~~~~~~YlvsPr~ahrfvgylEEe  173 (252)
                      |-....|.. ++. +..-|+.|+.|..+|.++.+     |. ...     ....++  .++.=+++|..+.++..-.|+.
T Consensus        20 la~~~~~~~-~k~~f~~lA~~E~~H~~~~~~~~~~~~~~~~-~~~-----~~~~~~--~~l~~~~g~~~~l~~~~~~E~~   90 (125)
T cd01044          20 LAKREKDPE-NREILLKLAEDERRHAEFWKKFLGKRGVPPP-RPK-----LKIFFY--KLLARIFGPTFVLKLLERGEER   90 (125)
T ss_pred             HHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-Ccc-----HHHHHH--HHHHHHHhHHHHHHHHHHhHHh
Confidence            333343433 554 55569999999999999862     22 111     111111  1233456888899999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhh
Q 025472          174 AIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDV  228 (252)
Q Consensus       174 Av~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~v  228 (252)
                      |+..|++..+.                           +..+..|-.||..|...
T Consensus        91 ai~~Y~~~~~~---------------------------~~~~~~Ii~dE~~H~~~  118 (125)
T cd01044          91 AIEKYDRLLEE---------------------------RPELKEIIADELEHEEV  118 (125)
T ss_pred             hHhhHHhhhhh---------------------------hHHHHHHHHHHHHHHHH
Confidence            99999998776                           35778999999999765

Ferritin-like N-terminal domain present in an uncharacterized family of proteins found in bacteria and archaea. These proteins also have a C-terminal CCC1-like transmembrane domain and are thought to be involved in iron and/or manganese transport. This domain has the conserved residues of a diiron center found in other ferritin-like proteins.

>cd00657 Ferritin_like Ferritin-like superfamily of diiron-containing four-helix-bundle proteins

Probab=93.60  E-value=0.94  Score=33.19  Aligned_cols=96  Identities=24%  Similarity=0.222  Sum_probs=65.5

Q ss_pred             CcchHHHHHHHHHhHHHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHH
Q 025472          106 SGGWIKALLEEAENERMHLMTFMEVA-----KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTE  180 (252)
Q Consensus       106 d~gwI~~lleEaeNErmHLl~~~el~-----~p~~~~R~lv~~~Q~vf~~~~~~~YlvsPr~ahrfvgylEEeAv~tYt~  180 (252)
                      +.+..+.+...+..|+.|...+.++.     +|.......       ....-......+|..+-...--.|..+...|..
T Consensus        26 ~~~~~~~~~~~a~~E~~H~~~l~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~E~~~~~~y~~   98 (130)
T cd00657          26 DPDLKDELLEIADEERRHADALAERLRELGGTPPLPPAHL-------LAAYALPKTSDDPAEALRAALEVEARAIAAYRE   98 (130)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHH-------HHhcccCCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence            44556667777999999999999884     343322210       001111123345666666667778889998988


Q ss_pred             HHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhh
Q 025472          181 FLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN  229 (252)
Q Consensus       181 ~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vN  229 (252)
                      +++..                    + |..+++++..+..||..|...-
T Consensus        99 ~~~~~--------------------~-d~~~~~~~~~~~~~E~~H~~~~  126 (130)
T cd00657          99 LIEQA--------------------D-DPELRRLLERILADEQRHAAWF  126 (130)
T ss_pred             HHHhc--------------------C-ChHHHHHHHHHHHHHHHHHHHH
Confidence            88765                    1 6778999999999999998753

Ferritin-like, diiron-carboxylate proteins participate in a range of functions including iron regulation, mono-oxygenation, and reactive radical production. These proteins are characterized by the fact that they catalyze dioxygen-dependent oxidation-hydroxylation reactions within diiron centers; one exception is manganese catalase, which catalyzes peroxide-dependent oxidation-reduction within a dimanganese center. Diiron-carboxylate proteins are further characterized by the presence of duplicate metal ligands, glutamates and histidines (ExxH) and two additional glutamates within a four-helix bundle. Outside of these conserved residues there is little obvious homology. Members include bacterioferritin, ferritin, rubrerythrin, aromatic and alkene monooxygenase hydroxylases (AAMH), ribonucleotide reductase R2 (RNRR2), acyl-ACP-desaturases (Acyl_ACP_Desat), manganese (Mn) catalases, demethoxyub

>KOG4061 consensus DMQ mono-oxygenase/Ubiquinone biosynthesis protein COQ7/CLK-1/CAT5 [General function prediction only]

Probab=86.41  E-value=2.8  Score=37.70  Aligned_cols=92  Identities=23%  Similarity=0.242  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCC
Q 025472          119 NERMHLMTFMEVA-----KPKWYERALVFAVQGVFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENV  193 (252)
Q Consensus       119 NErmHLl~~~el~-----~p~~~~R~lv~~~Q~vf~~~~~~~YlvsPr~ahrfvgylEEeAv~tYt~~l~~id~g~l~~~  193 (252)
                      .|-.||.+|.++.     .|+.+.-+--+.+    |-+-...-|++|+.|-.-..-+|+--..-|-.-|+++-+..    
T Consensus        89 qEk~Hl~tf~~l~~k~rVrpT~l~P~w~vag----falGaGTALlg~eaAMACT~AVEtvIg~HYNdQlr~l~~~~----  160 (217)
T KOG4061|consen   89 QEKEHLKTFENLALKHRVRPTVLTPLWNVAG----FALGAGTALLGKEAAMACTEAVETVIGGHYNDQLRELAEDD----  160 (217)
T ss_pred             HHHHHHHHHHHHHHHccCCchhhhhHHHHHH----HHhccchhhhChHHHHHHHHHHHHHHHHhhhHHHHHHHHhC----
Confidence            4678999999986     4776655443222    23444578999999988888888888888887777762211    


Q ss_pred             CCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhh
Q 025472          194 PAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN  229 (252)
Q Consensus       194 paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vN  229 (252)
                                 -+++-.|+-.|...|+||.+|.|+-
T Consensus       161 -----------pe~~kell~~i~~fRDeEleHhdtg  185 (217)
T KOG4061|consen  161 -----------PEEHKELLSTITKFRDEELEHHDTG  185 (217)
T ss_pred             -----------cHhHHHHHHHHHHHhHHHHHhhccc
Confidence                       1344678899999999999998764

>PRK13456 DNA protection protein DPS; Provisional

Probab=83.39  E-value=3  Score=37.17  Aligned_cols=117  Identities=21%  Similarity=0.215  Sum_probs=69.7

Q ss_pred             HhhhhhccccCcchHHHHHHHHH-hHHHHHHHHHH----Hh-CCch-HHHHHHHHHHHHHHHHHHHHHHhC-hhhHhhhh
Q 025472           96 HCKSLRRFEHSGGWIKALLEEAE-NERMHLMTFME----VA-KPKW-YERALVFAVQGVFFNAYFLGYLIS-PKFAHRMV  167 (252)
Q Consensus        96 Hl~sLr~~~rd~gwI~~lleEae-NErmHLl~~~e----l~-~p~~-~~R~lv~~~Q~vf~~~~~~~Ylvs-Pr~ahrfv  167 (252)
                      |-..+.|+.++.  |+..|+++- -|+-|-..+.+    |+ .|.. ...|.-+..+.       .+++-. |...-.++
T Consensus        42 ~a~~~~G~~~e~--V~e~le~a~~EEl~HA~~lAeRI~qLGG~P~~~p~~~~~ls~~~-------~~~~p~d~tdv~~mL  112 (186)
T PRK13456         42 LRAHLIGLEGEG--LKEIAEDARLEDRNHFEALVPRIYELGGKLPRDIREFHDISACP-------DAYLPENPTDPKEIL  112 (186)
T ss_pred             HHHHHhCcCcHH--HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCChHHHhhhhcCc-------cccCCCCcchHHHHH
Confidence            444456666543  666666655 88889876542    33 3432 22222222221       011211 22233333


Q ss_pred             hhh---hhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhhhccccccccc
Q 025472          168 GYL---EEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNHYASDIHYQGR  240 (252)
Q Consensus       168 gyl---EEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vNH~~ad~~~~~~  240 (252)
                      ...   |..|+.+|++.++...                   ..|-+=+|+++.|-+||.+|.+--..+=...+.|.
T Consensus       113 ~~~L~AEr~AI~~Y~eii~~~~-------------------~kDp~T~~l~~~IL~dE~eH~~dl~~lL~~~~~~~  169 (186)
T PRK13456        113 KVLLEAERCAIRTYTEICDMTA-------------------GKDPRTYDLALAILQEEIEHEAWFSELLGGGPSGH  169 (186)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-------------------cCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            322   7899999999999983                   34677889999999999999987766655444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d1nnqa1	133	Rubrerythrin, N-terminal domain {Archaeon Pyrococc	87.03
d1jkva_	266	Manganese catalase (T-catalase) {Lactobacillus pla	85.24
d1lkoa1	146	Rubrerythrin, N-terminal domain {Desulfovibrio vul	84.68
d1yuza1	135	Nigerythrin, N-terminal domain {Desulfovibrio vulg	82.03

>d1nnqa1 a.25.1.1 (A:2-134) Rubrerythrin, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Rubrerythrin, N-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=87.03  E-value=1.7  Score=32.55  Aligned_cols=121  Identities=15%  Similarity=0.040  Sum_probs=78.0

Q ss_pred             ccceeeeeehhccCChhHHHHHHHhhhhhccccCcchHHHHHHHHHhHHHHHHHHHHHhC--CchHHHHHHHHHHHHHHH
Q 025472           73 YGCRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVAK--PKWYERALVFAVQGVFFN  150 (252)
Q Consensus        73 ~~~R~~~LETVA~VPgmv~~~~~Hl~sLr~~~rd~gwI~~lleEaeNErmHLl~~~el~~--p~~~~R~lv~~~Q~vf~~  150 (252)
                      ++++++--|+-|..=|+..+.+.=      -+.....=+.+.++|.+|+.|...+.+...  ++-. ..+....++    
T Consensus        10 ~L~~A~~gE~~A~~~Y~~~A~~a~------~~G~~~lA~~f~~~A~eE~~HA~~~~~~i~~l~~~~-~~L~~~~~~----   78 (133)
T d1nnqa1          10 FLEEAFAGESMAHMRYLIFAEKAE------QEGFPNIAKLFRAIAYAEFVHAKNHFIALGKLGKTP-ENLQMGIEG----   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHH-HHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH------HCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHH-hhhHHHHHH----
Confidence            456677778888877877665411      111113345667889999999998888763  2211 111111111    


Q ss_pred             HHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhhh
Q 025472          151 AYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVNH  230 (252)
Q Consensus       151 ~~~~~YlvsPr~ahrfvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vNH  230 (252)
                                         -+.+++..|.++++..++                  -.|...+++|..|.+||..|.+-=-
T Consensus        79 -------------------e~~e~~~~Y~e~~~~a~~------------------egd~~~a~~f~~i~~~E~~Ha~~f~  121 (133)
T d1nnqa1          79 -------------------ETFEVEEMYPVYNKAAEF------------------QGEKEAVRTTHYALEAEKIHAELYR  121 (133)
T ss_dssp             -------------------HHHHHHTHHHHHHHHHHH------------------TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -------------------hHHHHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence                               134788889999877643                  3456789999999999999988766


Q ss_pred             hcccccccccc
Q 025472          231 YASDIHYQGRQ  241 (252)
Q Consensus       231 ~~ad~~~~~~~  241 (252)
                      .+-+...+|+.
T Consensus       122 ~~l~~le~g~~  132 (133)
T d1nnqa1         122 KAKEKAEKGED  132 (133)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHcCCC
Confidence            66665555544

>d1jkva_ a.25.1.3 (A:) Manganese catalase (T-catalase) {Lactobacillus plantarum [TaxId: 1590]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Manganese catalase (T-catalase)
domain: Manganese catalase (T-catalase)
species: Lactobacillus plantarum [TaxId: 1590]

Probab=85.24  E-value=0.18  Score=43.50  Aligned_cols=128  Identities=16%  Similarity=0.169  Sum_probs=84.3

Q ss_pred             eeeehhccCChhHHHHHHHhhhhhccccCcchHH-HHHHHHHhHHHHHHHHHHHh-----CCch------HHHHHHHHHH
Q 025472           78 MMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIK-ALLEEAENERMHLMTFMEVA-----KPKW------YERALVFAVQ  145 (252)
Q Consensus        78 ~~LETVA~VPgmv~~~~~Hl~sLr~~~rd~gwI~-~lleEaeNErmHLl~~~el~-----~p~~------~~R~lv~~~Q  145 (252)
                      .++|-++|.=|=-.++++-|.--..++ +.+.++ .|++=+--|..|+-++-.+-     +.+.      .+..+....+
T Consensus        24 ~L~e~~GG~~GElsa~~qYl~Q~~~~~-~~~~~~dll~dIatEEl~HlEmvat~I~~Ll~~~~~~~~~~~~~~~~~~~~~  102 (266)
T d1jkva_          24 RLQESLGGQWGETTGMMSYLSQGWAST-GAEKYKDLLLDTGTEEMAHVEMISTMIGYLLEDAPFGPEDLKRDPSLATTMA  102 (266)
T ss_dssp             HHHHHHHSTTSHHHHHHHHHHHHHHCC-SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHCTTHHHHHH
T ss_pred             HHHHHhCCCchHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhhcccchhHHHHhc
Confidence            367888888887777778877766555 345565 56777999999998775552     1111      0111111112


Q ss_pred             HH---HHHH--------------HHHHHHh---ChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCC
Q 025472          146 GV---FFNA--------------YFLGYLI---SPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRL  205 (252)
Q Consensus       146 ~v---f~~~--------------~~~~Ylv---sPr~ahrfvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~L  205 (252)
                      +.   ++..              +...|+.   .+...-|.+=..|..|..+|.+.++.+                    
T Consensus       103 G~~p~~~~~~g~g~~~~ds~G~pWt~~Yv~~~Gnl~~DL~~NiaAE~~Ar~~Y~rl~~~t--------------------  162 (266)
T d1jkva_         103 GMDPEHSLVHGLNASLNNPNGAAWNAGYVTSSGNLVADMRFNVVRESEARLQVSRLYSMT--------------------  162 (266)
T ss_dssp             HSCHHHHHTTSSCCCSBCTTCCBCBGGGCCCCSCHHHHHHHHHHHHHHHHHHHHHHHTTC--------------------
T ss_pred             CCCcceeeeccCcccccCCCCCCCCccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHhc--------------------
Confidence            21   1100              1223333   356777777888999999999988876                    


Q ss_pred             CCCCCHHHHHHHHHhhhhHhHh
Q 025472          206 PPNSTLKDVVLVVRADEAHHRD  227 (252)
Q Consensus       206 p~~atlrDvi~~IRaDEa~Hr~  227 (252)
                       +|-..+|++..|++||..|..
T Consensus       163 -dDp~vk~~L~fL~~rE~~H~~  183 (266)
T d1jkva_         163 -EDEGVRDMLKFLLARETQHQL  183 (266)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHH
T ss_pred             -CChhHHHHHHHHHHHHHHHHH
Confidence             468899999999999999965

>d1lkoa1 a.25.1.1 (A:2-147) Rubrerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Rubrerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=84.68  E-value=1.6  Score=32.28  Aligned_cols=127  Identities=13%  Similarity=-0.065  Sum_probs=73.9

Q ss_pred             ceeeeeehhccCChhHHHHHHHhhhhhccccCcchHHHHHHHHHhHHHHHHHHHHHh-----CCchHHHHHHHHHHHHHH
Q 025472           75 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA-----KPKWYERALVFAVQGVFF  149 (252)
Q Consensus        75 ~R~~~LETVA~VPgmv~~~~~Hl~sLr~~~rd~gwI~~lleEaeNErmHLl~~~el~-----~p~~~~R~lv~~~Q~vf~  149 (252)
                      ++++--|..|..=|+..+.+..-      +.-.+.-+.+.++|..|+.|...+.++.     .|....  ....      
T Consensus        13 ~~a~~~E~~A~~~Y~~~A~~a~~------~g~~~ia~~f~~~A~eE~~HA~~l~~~l~~lg~~p~~~~--~~~~------   78 (146)
T d1lkoa1          13 LTAFAGESQARNRYNYFGGQAKK------DGFVQISDIFAETADQEREHAKRLFKFLEGGDLEIVAAF--PAGI------   78 (146)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHHHHHHHCCSSCCCCCCCC--CCCC------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcCCCC--Cccc------
Confidence            34444566666666666554211      1112444667888999999999999984     221100  0000      


Q ss_pred             HHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhHhhh
Q 025472          150 NAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHRDVN  229 (252)
Q Consensus       150 ~~~~~~YlvsPr~ahrfvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr~vN  229 (252)
                            .--++...-...---|.+|+..|.++++..++                  -.|...+++|..|-.||..|.+.=
T Consensus        79 ------~~~~~~~l~~~~~~~e~e~~~~y~~~~~~a~~------------------~~D~~~~~~f~~i~~~E~~H~~~f  134 (146)
T d1lkoa1          79 ------IADTHANLIASAAGEHHEYTEMYPSFARIARE------------------EGYEEIARVFASIAVAEEFHEKRF  134 (146)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence                  00000011111122266799999999886633                  346778999999999999998765


Q ss_pred             hhcccccccc
Q 025472          230 HYASDIHYQG  239 (252)
Q Consensus       230 H~~ad~~~~~  239 (252)
                      ..+.+...+|
T Consensus       135 ~~~l~~l~~~  144 (146)
T d1lkoa1         135 LDFARNIKEG  144 (146)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHcC
Confidence            5555444333

>d1yuza1 a.25.1.1 (A:23-157) Nigerythrin, N-terminal domain {Desulfovibrio vulgaris [TaxId: 881]}

class: All alpha proteins
fold: Ferritin-like
superfamily: Ferritin-like
family: Ferritin
domain: Nigerythrin, N-terminal domain
species: Desulfovibrio vulgaris [TaxId: 881]

Probab=82.03  E-value=1.2  Score=32.70  Aligned_cols=113  Identities=15%  Similarity=-0.030  Sum_probs=65.4

Q ss_pred             ceeeeeehhccCChhHHHHHHHhhhhhccccCcchHHHHHHHHHhHHHHHHHHHHHh-----CCchHHHHHH---HHHHH
Q 025472           75 CRAMMLETVAAVPGMVGGMLLHCKSLRRFEHSGGWIKALLEEAENERMHLMTFMEVA-----KPKWYERALV---FAVQG  146 (252)
Q Consensus        75 ~R~~~LETVA~VPgmv~~~~~Hl~sLr~~~rd~gwI~~lleEaeNErmHLl~~~el~-----~p~~~~R~lv---~~~Q~  146 (252)
                      ++++-.|.-|..=|+..+.+.-      -+...+.-+.+.++|.+|+.|...+.+..     .|..-..-..   .... 
T Consensus        12 ~~a~~~E~~A~~~Yl~~A~~~~------~~g~~~ia~~f~~~A~eE~~HA~~l~~~l~~lgg~p~~~~~~~~~~~~~~~-   84 (135)
T d1yuza1          12 KAAIAGETGAHAKYTAFAKAAR------EQGYEQIARLFEATAAAELIHIGLEYALVAEMEPGYEKPTVAAPSAYSCDL-   84 (135)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCCCC--CCCCCHHH-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh------HCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccccCcCCchhh-
Confidence            4455556666666665555421      11112445778899999999999887763     1211000000   0000 


Q ss_pred             HHHHHHHHHHHhChhhHhhhhhhhhhhHHHHHHHHHHHhcCCCCCCCCCCHHHHHhhCCCCCCCHHHHHHHHHhhhhHhH
Q 025472          147 VFFNAYFLGYLISPKFAHRMVGYLEEEAIHSYTEFLKELDKGNIENVPAPAIATDYWRLPPNSTLKDVVLVVRADEAHHR  226 (252)
Q Consensus       147 vf~~~~~~~YlvsPr~ahrfvgylEEeAv~tYt~~l~~id~g~l~~~paP~iA~~Yw~Lp~~atlrDvi~~IRaDEa~Hr  226 (252)
                         ++..            -..--|.|++..|.++++..++                  -.|...+|.|..|-.||-.|.
T Consensus        85 ---~L~~------------~~~~ee~e~~~~Y~~~~~~A~~------------------~~d~~~~~~f~~i~~~E~~H~  131 (135)
T d1yuza1          85 ---NLIS------------GANGEIYETSDMYPAFIRKAQE------------------EGNSKAVHVFTRAKLAESVHA  131 (135)
T ss_dssp             ---HHHH------------HHHHHHHHHHTHHHHHHHHHHH------------------HTCHHHHHHHHHHHHHHHHHH
T ss_pred             ---hHHH------------HHHHHHHHHHHHHHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHH
Confidence               0000            0001145799999999886532                  235667899999999999997


Q ss_pred             h
Q 025472          227 D  227 (252)
Q Consensus       227 ~  227 (252)
                      +
T Consensus       132 e  132 (135)
T d1yuza1         132 E  132 (135)
T ss_dssp             H
T ss_pred             H
Confidence            5