Citrus Sinensis ID: 025475
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 252 | 2.2.26 [Sep-21-2011] | |||||||
| A5PK19 | 699 | Methyltransferase-like pr | yes | no | 0.607 | 0.218 | 0.392 | 5e-24 | |
| Q8N6R0 | 699 | Methyltransferase-like pr | no | no | 0.603 | 0.217 | 0.394 | 8e-24 | |
| Q91YR5 | 698 | Methyltransferase-like pr | no | no | 0.595 | 0.214 | 0.387 | 1e-23 | |
| Q9VIK9 | 673 | Methyltransferase-like pr | yes | no | 0.559 | 0.209 | 0.397 | 1e-22 | |
| A5WVX1 | 690 | Methyltransferase-like pr | no | no | 0.678 | 0.247 | 0.331 | 5e-22 | |
| Q29LW1 | 673 | Methyltransferase-like pr | yes | no | 0.555 | 0.208 | 0.394 | 4e-21 | |
| O60344 | 883 | Endothelin-converting enz | no | no | 0.523 | 0.149 | 0.328 | 5e-20 | |
| Q10711 | 883 | Endothelin-converting enz | no | no | 0.555 | 0.158 | 0.319 | 2e-19 | |
| Q80Z60 | 881 | Endothelin-converting enz | no | no | 0.535 | 0.153 | 0.301 | 2e-18 | |
| Q6NTR1 | 693 | Methyltransferase-like pr | N/A | no | 0.559 | 0.203 | 0.335 | 4e-18 |
| >sp|A5PK19|MET13_BOVIN Methyltransferase-like protein 13 OS=Bos taurus GN=METTL13 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 62/158 (39%), Positives = 90/158 (56%), Gaps = 5/158 (3%)
Query: 9 NTYNYGDALYWNARYVQEGG-SFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDM 67
++ +G YW + Q G +F+WY Y L + KYI +VL+VGCGN+ +SE +
Sbjct: 7 SSKEFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVVGCGNSELSEQL 66
Query: 68 VKDGYEDIVNIDISSVAIDMMKMK-YEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126
GY+DIVNIDIS V I MK + P++ +L+MD+ M F D SF V+DKGTLD
Sbjct: 67 YDVGYQDIVNIDISEVVIKQMKERNASRRPRMSFLKMDMTQME-FPDASFQVVLDKGTLD 125
Query: 127 SLMCGTNAPI--SASQMLGEVSRLLKPGGIYMLITYGD 162
+++ +ML EV R+L+ GG Y+ I+
Sbjct: 126 AVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLAQ 163
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Bos taurus (taxid: 9913) EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: - |
| >sp|Q8N6R0|MET13_HUMAN Methyltransferase-like protein 13 OS=Homo sapiens GN=METTL13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (276), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 62/157 (39%), Positives = 88/157 (56%), Gaps = 5/157 (3%)
Query: 9 NTYNYGDALYWNARYVQEGG-SFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDM 67
++ +G YW + Q G +F+WY Y L + KYI +VL++GCGN+ +SE +
Sbjct: 7 SSREFGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVIGCGNSELSEQL 66
Query: 68 VKDGYEDIVNIDISSVAIDMMK-MKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126
GY DIVNIDIS V I MK PQ+ +L+MD+ M F D SF V+DKGTLD
Sbjct: 67 YDVGYRDIVNIDISEVVIKQMKECNATRRPQMSFLKMDMTQME-FPDASFQVVLDKGTLD 125
Query: 127 SLMCGTNAPI--SASQMLGEVSRLLKPGGIYMLITYG 161
+++ +ML EV R+L+ GG Y+ I+
Sbjct: 126 AVLTDEEEKTLQQVDRMLAEVGRVLQVGGRYLCISLA 162
|
Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q91YR5|MET13_MOUSE Methyltransferase-like protein 13 OS=Mus musculus GN=Mettl13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 60/155 (38%), Positives = 90/155 (58%), Gaps = 5/155 (3%)
Query: 9 NTYNYGDALYWNARYVQEGGS-FDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDM 67
++ +G A YW + Q G + F+WY Y L + KYI +VL++GCGN+ +SE +
Sbjct: 7 SSKEFGSADYWEKFFQQRGKTAFEWYGTYLELCEVLHKYIKPKEKVLVIGCGNSELSEQL 66
Query: 68 VKDGYEDIVNIDISSVAIDMMKMKY-EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126
GY+DIVNIDIS V I MK + P + +L+MD+ + F D +F V+DKGTLD
Sbjct: 67 YDVGYQDIVNIDISEVVIKQMKERNGSRRPHMSFLKMDMTQLE-FPDATFQVVLDKGTLD 125
Query: 127 SLMCGTNAPI--SASQMLGEVSRLLKPGGIYMLIT 159
+++ +ML EV R+L+ GG Y+ I+
Sbjct: 126 AVLTDEEEVTLRQVDRMLAEVGRVLQVGGRYLCIS 160
|
Mus musculus (taxid: 10090) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q9VIK9|MET13_DROME Methyltransferase-like protein 13 OS=Drosophila melanogaster GN=CG2614 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 107 bits (266), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/146 (39%), Positives = 86/146 (58%), Gaps = 5/146 (3%)
Query: 18 YWNARYVQEG-GSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIV 76
YWN + + G +F+WY Y L + KYI + R+LM+GCGN+ +S DM G+ DI
Sbjct: 16 YWNEFFKKRGEKAFEWYGEYLELCDQIHKYIKPADRILMLGCGNSKLSMDMYDTGFRDIT 75
Query: 77 NIDISSVAI-DMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAP 135
NIDIS +A+ M+++ + P++K+LQMD M+ F DESF +DKGTLD+L
Sbjct: 76 NIDISPIAVKKMLELNAKSRPEMKFLQMDATAMT-FPDESFSVSLDKGTLDALFADDEPE 134
Query: 136 ISA--SQMLGEVSRLLKPGGIYMLIT 159
A E+ R ++ GG Y+ I+
Sbjct: 135 TRAVVENYFKEILRTMRNGGRYVGIS 160
|
Drosophila melanogaster (taxid: 7227) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|A5WVX1|MET13_DANRE Methyltransferase-like protein 13 OS=Danio rerio GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 104 bits (260), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 58/175 (33%), Positives = 91/175 (52%), Gaps = 4/175 (2%)
Query: 13 YGDALYWNARYVQEG-GSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG 71
+ A YW + + G +F+WY Y++L + KYI +VL+VGCGN+ +SE + G
Sbjct: 11 FSSADYWERFFRKRGEKAFEWYGDYNSLCGVLHKYIKPRDKVLVVGCGNSELSEQLYDVG 70
Query: 72 YEDIVNIDISSVAIDMMKMK-YEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 130
Y + NIDIS + M + E P L + Q+D FE SF +DKGTLD++
Sbjct: 71 YRQLTNIDISETVVSHMNQRNAERRPDLSFQQLDATQTG-FESGSFQVTLDKGTLDAMAS 129
Query: 131 GTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIA 185
+ + A +ML EV R+L GG Y+ IT + ++ V W + ++ +
Sbjct: 130 EEDGAL-AGRMLAEVGRVLAVGGRYVCITLAQEHVIKLAVEHFVKGWAVRVHCLT 183
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Danio rerio (taxid: 7955) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|Q29LW1|MTE13_DROPS Methyltransferase-like protein 13 OS=Drosophila pseudoobscura pseudoobscura GN=GA15401 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 101 bits (252), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 58/147 (39%), Positives = 85/147 (57%), Gaps = 7/147 (4%)
Query: 18 YWNARYVQEG-GSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIV 76
YWN + + G +F+WY Y L + KYI ++LM+GCGN+ +S DM Y DI
Sbjct: 16 YWNEFFKKRGEKAFEWYGEYLDLCDHIHKYIKPVDKILMLGCGNSKLSMDMYDSEYRDIT 75
Query: 77 NIDISSVAI-DMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAP 135
NIDIS VA+ M++ P +K+LQMD M+ F DESF +DKGTLD+L +AP
Sbjct: 76 NIDISPVAVKKMLEQNARTRPDMKFLQMDATAMT-FPDESFSVALDKGTLDALFVD-DAP 133
Query: 136 ISASQM---LGEVSRLLKPGGIYMLIT 159
+ + + E+ R ++ GG Y ++
Sbjct: 134 ETKAVVENYFKEILRTMRNGGRYFCVS 160
|
Drosophila pseudoobscura pseudoobscura (taxid: 46245) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
| >sp|O60344|ECE2_HUMAN Endothelin-converting enzyme 2 OS=Homo sapiens GN=ECE2 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 98.2 bits (243), Expect = 5e-20, Method: Composition-based stats.
Identities = 47/143 (32%), Positives = 82/143 (57%), Gaps = 11/143 (7%)
Query: 13 YGDALYWNARY--VQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD 70
Y + YW+ RY + +DW+ +S+ R + + R+L++GCGN+ +S ++
Sbjct: 20 YREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLG 79
Query: 71 GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 130
G+ ++ ++D SSV + M+ ++ +PQL++ MDVR + F SFD V++KGTLD+L+
Sbjct: 80 GFPNVTSVDYSSVVVAAMQARHAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLDALLA 138
Query: 131 GTNAPISAS--------QMLGEV 145
G P + S Q+L EV
Sbjct: 139 GERDPWTVSSEGVHTVDQVLSEV 161
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Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|Q10711|ECE2_BOVIN Endothelin-converting enzyme 2 OS=Bos taurus GN=ECE2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/144 (31%), Positives = 83/144 (57%), Gaps = 4/144 (2%)
Query: 13 YGDALYWNARY--VQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD 70
Y + YW+ RY + ++W+ +S R + + R+L++GCGN+ +S ++
Sbjct: 20 YREVQYWDQRYQGAADSAPYEWFGDFSCFRDLLEPELRPLDRILVLGCGNSALSYELFLG 79
Query: 71 GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 130
G+ D+ ++D SSV + M+ +Y +P L++ MDVR + F SFD V++KGTLD+L+
Sbjct: 80 GFPDVTSVDYSSVVVAAMRARYAHVPTLRWETMDVRALG-FPSGSFDVVLEKGTLDALLT 138
Query: 131 GTNAPIS-ASQMLGEVSRLLKPGG 153
G P + +S+ + V ++L G
Sbjct: 139 GEQDPWTVSSEGVHTVDQVLNEAG 162
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Bos taurus (taxid: 9913) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|Q80Z60|ECE2_MOUSE Endothelin-converting enzyme 2 OS=Mus musculus GN=Ece2 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 44/146 (30%), Positives = 82/146 (56%), Gaps = 11/146 (7%)
Query: 10 TYNYGDALYWNARY--VQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDM 67
+ Y YW+ RY + G ++W+ +++ R + + R+L++GCGN+ +S ++
Sbjct: 17 NFQYRQVQYWDQRYKDAADSGPYEWFGDFASFRALLEPELCPEDRILVLGCGNSALSYEL 76
Query: 68 VKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127
G+ ++ ++D S V + M+++Y +P L++ MDVR + F SFD V++KGTLD+
Sbjct: 77 FLGGFPNVTSVDYSPVVVAAMQVRYAHVPSLRWETMDVRALD-FPSGSFDVVLEKGTLDA 135
Query: 128 LMCGTNAPISAS--------QMLGEV 145
++ G P + S Q+L EV
Sbjct: 136 MLAGEPDPWNVSSEGVHTVDQVLSEV 161
|
Converts big endothelin-1 to endothelin-1. Also involved in the processing of various neuroendocrine peptides, including neurotensin, angiotensin I, substance P, proenkephalin-derived peptides, and prodynorphin-derived peptides. May limit beta-amyloid peptide accumulation in brain. May also have methyltransferase activity. Mus musculus (taxid: 10090) EC: 3 EC: . EC: 4 EC: . EC: 2 EC: 4 EC: . EC: 7 EC: 1 |
| >sp|Q6NTR1|MET13_XENLA Methyltransferase-like protein 13 OS=Xenopus laevis GN=mettl13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 82/146 (56%), Gaps = 5/146 (3%)
Query: 18 YWNARYVQEG-GSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIV 76
YW + + G +F+WY Y L + KYI +V +VGCGN+ +SE + G +++
Sbjct: 16 YWEQFFRRRGERAFEWYGGYLELCGLLHKYIKPRDKVFVVGCGNSELSEQLYDAGCQNLT 75
Query: 77 NIDISSVAIDMMKMK-YEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAP 135
NID+S V I M + P + + MD + F+D F AV+DKGTLD++M T+
Sbjct: 76 NIDVSEVVIRQMNERNSNRRPNMTFQVMDATQTT-FDDSCFQAVLDKGTLDAIMTDTDKG 134
Query: 136 I--SASQMLGEVSRLLKPGGIYMLIT 159
+A +++ E+ R+L GG ++ ++
Sbjct: 135 TLETADKLMSEIGRVLTCGGRFLCVS 160
|
Xenopus laevis (taxid: 8355) EC: 2 EC: . EC: 1 EC: . EC: 1 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 252 | ||||||
| 356542850 | 252 | PREDICTED: methyltransferase-like protei | 1.0 | 1.0 | 0.765 | 1e-113 | |
| 225449975 | 253 | PREDICTED: methyltransferase-like protei | 1.0 | 0.996 | 0.770 | 1e-112 | |
| 449436703 | 253 | PREDICTED: methyltransferase-like protei | 1.0 | 0.996 | 0.750 | 1e-109 | |
| 388497068 | 258 | unknown [Lotus japonicus] | 0.988 | 0.965 | 0.755 | 1e-109 | |
| 224055075 | 252 | predicted protein [Populus trichocarpa] | 0.984 | 0.984 | 0.765 | 1e-108 | |
| 22331889 | 252 | S-adenosyl-L-methionine-dependent methyl | 1.0 | 1.0 | 0.726 | 1e-108 | |
| 297817412 | 251 | hypothetical protein ARALYDRAFT_486567 [ | 0.996 | 1.0 | 0.726 | 1e-107 | |
| 351726437 | 249 | uncharacterized protein LOC100527880 [Gl | 0.944 | 0.955 | 0.760 | 1e-105 | |
| 224106155 | 257 | predicted protein [Populus trichocarpa] | 0.992 | 0.972 | 0.741 | 1e-105 | |
| 357121671 | 276 | PREDICTED: methyltransferase-like protei | 0.916 | 0.836 | 0.620 | 2e-83 |
| >gi|356542850|ref|XP_003539878.1| PREDICTED: methyltransferase-like protein 13-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 193/252 (76%), Positives = 219/252 (86%)
Query: 1 MYRDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60
M+RDVSSCNTYNYG+A YW+ARY+QEGGSFDWYQRYSALRPFVR +IP SSR+LMVGCGN
Sbjct: 1 MFRDVSSCNTYNYGEAGYWDARYIQEGGSFDWYQRYSALRPFVRNFIPLSSRILMVGCGN 60
Query: 61 ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120
A+MSEDMVKDGYEDIVNIDISSVAIDMM+ KYE IPQLKY+QMDVRDMS F DESFD VI
Sbjct: 61 AVMSEDMVKDGYEDIVNIDISSVAIDMMRTKYEYIPQLKYMQMDVRDMSLFPDESFDGVI 120
Query: 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 180
DKGTLDSLMCGT+APISA+QML EV RLLKPGG Y+LITYGDP RM H+ V+NWKI
Sbjct: 121 DKGTLDSLMCGTDAPISAAQMLAEVCRLLKPGGTYILITYGDPTVRMPHISRPVFNWKIT 180
Query: 181 LYIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDEN 240
LY I RPGF+KP + S KSYLEP+P+T+ G LPA+FVLEDPDSH+IYVCKK+ND +
Sbjct: 181 LYNIPRPGFQKPESSTPSRKSYLEPIPLTEKGLLPADFVLEDPDSHYIYVCKKINDTEIE 240
Query: 241 HIPSYTLKGDIL 252
+IP+Y L D+L
Sbjct: 241 NIPAYQLTADVL 252
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225449975|ref|XP_002272409.1| PREDICTED: methyltransferase-like protein 13 [Vitis vinifera] gi|296085100|emb|CBI28595.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 195/253 (77%), Positives = 223/253 (88%), Gaps = 1/253 (0%)
Query: 1 MYRDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60
MYRDVSSCN+YNYGDALYW+ARY+QE GSFDWYQRYSALRPFVR+YIPTSSRVLMVGCGN
Sbjct: 1 MYRDVSSCNSYNYGDALYWDARYIQEAGSFDWYQRYSALRPFVRRYIPTSSRVLMVGCGN 60
Query: 61 ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120
A+MSEDMVKDGYE+I+NIDISSVAI+MM+ K+E I QL+Y+QMDV+DMSFF DESFD VI
Sbjct: 61 AVMSEDMVKDGYEEIMNIDISSVAIEMMRRKHEHIHQLQYMQMDVKDMSFFPDESFDCVI 120
Query: 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 180
DKGTLDSLMCGT+APISAS+MLGEVSRLLKPGGIYMLITYGDP RM HL VYNWK+
Sbjct: 121 DKGTLDSLMCGTDAPISASRMLGEVSRLLKPGGIYMLITYGDPTVRMPHLGRPVYNWKVV 180
Query: 181 LYIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDE- 239
LY+I RPGF+KP G +SS KSYLEPVP T+ G L FVLEDPDSH+IY+CKKM++ E
Sbjct: 181 LYVIPRPGFQKPAGSTSSAKSYLEPVPTTEKGLLLPGFVLEDPDSHYIYICKKMDETAEL 240
Query: 240 NHIPSYTLKGDIL 252
+IP+Y L ++L
Sbjct: 241 GNIPAYPLTSEVL 253
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449436703|ref|XP_004136132.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] gi|449489144|ref|XP_004158228.1| PREDICTED: methyltransferase-like protein 13-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1026), Expect = e-109, Method: Compositional matrix adjust.
Identities = 190/253 (75%), Positives = 219/253 (86%), Gaps = 1/253 (0%)
Query: 1 MYRDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60
MYRDVSSCNTYNYGDA+YW+ARY+QE GSFDWYQRYS+LRPFVRK+I TS+ VLMVGCGN
Sbjct: 1 MYRDVSSCNTYNYGDAVYWDARYLQEAGSFDWYQRYSSLRPFVRKFISTSASVLMVGCGN 60
Query: 61 ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120
A+MSEDMVKDGYEDI+N+DISSVAIDMMK KY+ IPQLKY++MDVRDMSFF DE F AVI
Sbjct: 61 AVMSEDMVKDGYEDIMNVDISSVAIDMMKRKYQFIPQLKYMEMDVRDMSFFPDEKFGAVI 120
Query: 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 180
DKGTLDSLMCGT+APISA+QMLGEVSRLLKPGG+Y+LITYGDPK RM HL YNWKI
Sbjct: 121 DKGTLDSLMCGTDAPISAAQMLGEVSRLLKPGGVYLLITYGDPKVRMPHLMRPSYNWKIA 180
Query: 181 LYIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDEN 240
L+II RPG+++P CS+ KS LE VP+T++G L FV+EDPDSHFIYVC+K++D D N
Sbjct: 181 LFIIPRPGYQRPEECSTPEKSNLEQVPLTENGLLSPNFVMEDPDSHFIYVCQKLDDSDPN 240
Query: 241 HI-PSYTLKGDIL 252
+I P Y L D L
Sbjct: 241 NIVPPYPLSTDAL 253
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|388497068|gb|AFK36600.1| unknown [Lotus japonicus] | Back alignment and taxonomy information |
|---|
Score = 399 bits (1025), Expect = e-109, Method: Compositional matrix adjust.
Identities = 188/249 (75%), Positives = 214/249 (85%)
Query: 3 RDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNAL 62
RDVSSCNTYNYGDALYW+ RY+QEGGSFDWYQRYS+LRPFVR P SS +LMVGCGNA+
Sbjct: 5 RDVSSCNTYNYGDALYWDTRYIQEGGSFDWYQRYSSLRPFVRHCFPLSSTLLMVGCGNAV 64
Query: 63 MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 122
MSEDMV+DGYEDIVNIDISSVAIDMM+ KYE IPQLKY+QMDVRDMS+F DESFD VIDK
Sbjct: 65 MSEDMVRDGYEDIVNIDISSVAIDMMRRKYEYIPQLKYMQMDVRDMSYFPDESFDGVIDK 124
Query: 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELY 182
GTLDSLMCGT+APISASQML EV RLLKPGG YMLITYGDP RM HL VYNWKI LY
Sbjct: 125 GTLDSLMCGTDAPISASQMLAEVCRLLKPGGSYMLITYGDPTVRMPHLSKPVYNWKITLY 184
Query: 183 IIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDENHI 242
I RPGF+KP +S+ KSYLEP+P+T+ G LP ++V+EDPDSHFIYVC+K+ D + +++
Sbjct: 185 NIPRPGFQKPETSTSARKSYLEPIPLTEKGSLPTDWVMEDPDSHFIYVCRKIIDTEIDNV 244
Query: 243 PSYTLKGDI 251
PSY L D+
Sbjct: 245 PSYKLTTDV 253
|
Source: Lotus japonicus Species: Lotus japonicus Genus: Lotus Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224055075|ref|XP_002298412.1| predicted protein [Populus trichocarpa] gi|222845670|gb|EEE83217.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1021), Expect = e-108, Method: Compositional matrix adjust.
Identities = 193/252 (76%), Positives = 222/252 (88%), Gaps = 4/252 (1%)
Query: 1 MYRDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60
MY DVSSCNTYNYGDALYW+ARYVQE SFDWYQRY++LRPFVR+YIPTSSRVLMVGCGN
Sbjct: 1 MYSDVSSCNTYNYGDALYWDARYVQEAESFDWYQRYASLRPFVRRYIPTSSRVLMVGCGN 60
Query: 61 ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120
ALMSEDMV DGYE+I+N+DISSVAID+M+ KYE +PQL Y++MDVRDMSFF DESFDAVI
Sbjct: 61 ALMSEDMVDDGYENIMNVDISSVAIDLMRRKYEHMPQLNYMEMDVRDMSFFPDESFDAVI 120
Query: 121 DKGTLDSLMCGTNAPISASQMLGEVSR-LLKPGGIYMLITYGDPKARMIHLKWKVYNWKI 179
DKGTLDSLMCG++APISA++MLGEVSR LLKPGGIYMLITYGDPK RM HL +Y+WKI
Sbjct: 121 DKGTLDSLMCGSDAPISAARMLGEVSRLLLKPGGIYMLITYGDPKVRMPHLTRSIYSWKI 180
Query: 180 ELYIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMND-MD 238
LY I RPGF+KP G SS+ S+LEPVPIT+ G LPA+FVL+DPDSHFIYVCKKM++ D
Sbjct: 181 VLYAIPRPGFKKPAGSSSN--SHLEPVPITETGLLPADFVLDDPDSHFIYVCKKMDETTD 238
Query: 239 ENHIPSYTLKGD 250
++I S+ L D
Sbjct: 239 LSNISSHPLIAD 250
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22331889|ref|NP_191650.2| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] gi|19347803|gb|AAL86352.1| unknown protein [Arabidopsis thaliana] gi|21689777|gb|AAM67532.1| unknown protein [Arabidopsis thaliana] gi|332646605|gb|AEE80126.1| S-adenosyl-L-methionine-dependent methyltransferase-like protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 395 bits (1015), Expect = e-108, Method: Compositional matrix adjust.
Identities = 183/252 (72%), Positives = 216/252 (85%)
Query: 1 MYRDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60
M RDVSSCNTYNYGDALYW+ARYVQ+ SFDWYQ YS+LRPFVR ++ TSSRVLMVGCGN
Sbjct: 1 MQRDVSSCNTYNYGDALYWDARYVQDALSFDWYQCYSSLRPFVRSFVSTSSRVLMVGCGN 60
Query: 61 ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120
+LMSEDMVKDGYEDI+N+DISSVAI+MM+ KY +PQLKY+QMDVRDMS+FED+SFD +I
Sbjct: 61 SLMSEDMVKDGYEDIMNVDISSVAIEMMQTKYASVPQLKYMQMDVRDMSYFEDDSFDTII 120
Query: 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 180
DKGTLDSLMCG++A +SAS+MLGEVSRL+KPGG Y LITYGDPK RM HL YNWKI
Sbjct: 121 DKGTLDSLMCGSDALLSASRMLGEVSRLIKPGGTYFLITYGDPKVRMPHLTRSAYNWKIS 180
Query: 181 LYIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDEN 240
LYII RPGF++P CSSS KS +E +PIT +G LP ++VLEDPDSHFIY+CKK ++ +E
Sbjct: 181 LYIIPRPGFKRPESCSSSAKSCMEAIPITSEGMLPHDYVLEDPDSHFIYICKKKDEDEEA 240
Query: 241 HIPSYTLKGDIL 252
+PSY L D+L
Sbjct: 241 QLPSYPLMEDVL 252
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297817412|ref|XP_002876589.1| hypothetical protein ARALYDRAFT_486567 [Arabidopsis lyrata subsp. lyrata] gi|297322427|gb|EFH52848.1| hypothetical protein ARALYDRAFT_486567 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1006), Expect = e-107, Method: Compositional matrix adjust.
Identities = 183/252 (72%), Positives = 213/252 (84%), Gaps = 1/252 (0%)
Query: 1 MYRDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60
M RDVSSCNTYNYGDALYW+ARYVQ+ SFDWYQRYS+LRPFVR ++ TSSRVLMVGCGN
Sbjct: 1 MQRDVSSCNTYNYGDALYWDARYVQDALSFDWYQRYSSLRPFVRSFVSTSSRVLMVGCGN 60
Query: 61 ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120
+LMSEDMV DGYEDI+N+DISSVAI+MM+ KY +PQLKY+QMDVRDMS+F D+SFD VI
Sbjct: 61 SLMSEDMVNDGYEDIMNVDISSVAIEMMQTKYASVPQLKYMQMDVRDMSYFADDSFDTVI 120
Query: 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 180
DKGTLDSLMCG++A +SA +MLGEVSRL+KPGG Y LITYGDPK RM HL YNWKI
Sbjct: 121 DKGTLDSLMCGSDALLSAPRMLGEVSRLIKPGGTYFLITYGDPKVRMPHLTRSAYNWKIS 180
Query: 181 LYIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDEN 240
LYII RPGF++P CSSS KS +E +PIT +G LP ++VLEDPDSHFIY+CKK D +E
Sbjct: 181 LYIIPRPGFKRPESCSSSAKSCMEAIPITSEGMLPHDYVLEDPDSHFIYICKK-KDEEEA 239
Query: 241 HIPSYTLKGDIL 252
+PSY L D+L
Sbjct: 240 QLPSYPLMADVL 251
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|351726437|ref|NP_001235079.1| uncharacterized protein LOC100527880 [Glycine max] gi|255633450|gb|ACU17083.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 181/238 (76%), Positives = 206/238 (86%)
Query: 1 MYRDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60
M+RDVSSCNTYNYG+A+YW+ARY+QE GS DWYQRYSALRPFVR +IP SSR+LMVGCGN
Sbjct: 1 MFRDVSSCNTYNYGEAVYWDARYIQEDGSCDWYQRYSALRPFVRNFIPLSSRILMVGCGN 60
Query: 61 ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120
++MSEDMVKDGYEDIVNIDISS+AIDMM KYE IPQLKYLQM+VRDMS F DESFD VI
Sbjct: 61 SVMSEDMVKDGYEDIVNIDISSIAIDMMSRKYEHIPQLKYLQMNVRDMSLFPDESFDGVI 120
Query: 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 180
DKGTLDSLMCGT+APISA+QML EV RLLKPGG Y+LITYGDP RM H+ V+NWKI
Sbjct: 121 DKGTLDSLMCGTDAPISAAQMLAEVCRLLKPGGTYILITYGDPTVRMPHISRPVFNWKIT 180
Query: 181 LYIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMD 238
LY I RPGF+KP + S KSYLEP+ +T+ G L A+FVLEDPDSH+IYVCKK+ND +
Sbjct: 181 LYNIPRPGFQKPESSTPSRKSYLEPIALTEKGLLSADFVLEDPDSHYIYVCKKINDTE 238
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224106155|ref|XP_002314063.1| predicted protein [Populus trichocarpa] gi|222850471|gb|EEE88018.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 387 bits (995), Expect = e-105, Method: Compositional matrix adjust.
Identities = 192/259 (74%), Positives = 216/259 (83%), Gaps = 9/259 (3%)
Query: 1 MYRDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60
MYRDVSSCNTYNYGDALYW+ARYVQE SFDWYQ YS+LRPFVR+YIPTSSRVLMVGCGN
Sbjct: 1 MYRDVSSCNTYNYGDALYWDARYVQEAESFDWYQHYSSLRPFVRRYIPTSSRVLMVGCGN 60
Query: 61 ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120
A MSEDMV+DGYE+I NIDISSVAID+M+ KYE + QL Y++MD RDMSFF D+SFDAV+
Sbjct: 61 ARMSEDMVEDGYENITNIDISSVAIDIMRRKYEHVHQLNYMEMDARDMSFFPDKSFDAVV 120
Query: 121 DKGTLDSL------MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKV 174
DKG SL CG++APIS+ +MLGEVSRLLKPGGIYMLITYGDPK RM HL +
Sbjct: 121 DKGIFLSLPLDLLFNCGSDAPISSVRMLGEVSRLLKPGGIYMLITYGDPKVRMPHLTRSI 180
Query: 175 YNWKIELYIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKM 234
YNWKI LYII RPGFEKPGG SS+ S+LEPVPI+D G LPA+FVLEDPDSHFIYVCKKM
Sbjct: 181 YNWKIILYIIPRPGFEKPGGSSSN--SHLEPVPISDTGVLPADFVLEDPDSHFIYVCKKM 238
Query: 235 NDMDE-NHIPSYTLKGDIL 252
++ E + I SY L D L
Sbjct: 239 DETTEVSDISSYPLIADAL 257
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357121671|ref|XP_003562541.1| PREDICTED: methyltransferase-like protein 13-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 315 bits (806), Expect = 2e-83, Method: Compositional matrix adjust.
Identities = 147/237 (62%), Positives = 187/237 (78%), Gaps = 6/237 (2%)
Query: 9 NTYNYGDALYWNARYVQEGGS-FDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDM 67
++YG+A YW+ARYV+EGG+ +DWYQRY+ALRPFVR + P +SR+LM+GCG+AL+SEDM
Sbjct: 35 TVFSYGEAGYWDARYVEEGGAPYDWYQRYAALRPFVRLFAPPASRLLMIGCGSALISEDM 94
Query: 68 VKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127
V DGY DI+NIDISSV I+MM+ KY +IPQL+Y+QMDVRDMS F DESFD IDKGTLDS
Sbjct: 95 VADGYTDIMNIDISSVVIEMMRKKYFDIPQLQYMQMDVRDMSIFSDESFDCAIDKGTLDS 154
Query: 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARP 187
LMCG AP+SA++M+ EV RLLKPGG++MLITYGDP AR+ HL V NWKI LYI+ RP
Sbjct: 155 LMCGVEAPLSAARMVLEVDRLLKPGGVFMLITYGDPSARVPHLNQPVCNWKIVLYILPRP 214
Query: 188 GFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDENHIPS 244
GF+ + +S +PVP+T+ G+LP F+ EDPDSH++YVCKK+ P+
Sbjct: 215 GFQ-----GKAKRSIFDPVPLTESGRLPDGFIPEDPDSHYVYVCKKVQGSTGTGSPT 266
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 252 | ||||||
| TAIR|locus:2101861 | 252 | AT3G60910 "AT3G60910" [Arabido | 1.0 | 1.0 | 0.726 | 4.2e-102 | |
| DICTYBASE|DDB_G0282393 | 232 | DDB_G0282393 "Methyltransferas | 0.670 | 0.728 | 0.441 | 1.7e-38 | |
| ZFIN|ZDB-GENE-070912-214 | 260 | si:ch211-224b1.4 "si:ch211-224 | 0.666 | 0.646 | 0.376 | 1.9e-28 | |
| UNIPROTKB|F1PUB6 | 255 | ECE2 "Uncharacterized protein" | 0.694 | 0.686 | 0.320 | 8.4e-26 | |
| UNIPROTKB|D4ADU7 | 255 | LOC100363561 "Protein LOC10036 | 0.658 | 0.650 | 0.316 | 2.2e-25 | |
| UNIPROTKB|G3N1Q4 | 255 | ECE2 "Endothelin-converting en | 0.658 | 0.650 | 0.327 | 5.9e-25 | |
| UNIPROTKB|F1PCU5 | 608 | F1PCU5 "Uncharacterized protei | 0.583 | 0.241 | 0.407 | 1.5e-24 | |
| UNIPROTKB|F1S7S8 | 699 | METTL13 "Uncharacterized prote | 0.579 | 0.208 | 0.417 | 1.6e-24 | |
| UNIPROTKB|F1PDJ6 | 699 | METTL13 "Uncharacterized prote | 0.583 | 0.210 | 0.407 | 2.1e-24 | |
| TAIR|locus:2116174 | 248 | AT4G34360 "AT4G34360" [Arabido | 0.690 | 0.701 | 0.358 | 3.3e-24 |
| TAIR|locus:2101861 AT3G60910 "AT3G60910" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
Identities = 183/252 (72%), Positives = 216/252 (85%)
Query: 1 MYRDVSSCNTYNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60
M RDVSSCNTYNYGDALYW+ARYVQ+ SFDWYQ YS+LRPFVR ++ TSSRVLMVGCGN
Sbjct: 1 MQRDVSSCNTYNYGDALYWDARYVQDALSFDWYQCYSSLRPFVRSFVSTSSRVLMVGCGN 60
Query: 61 ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120
+LMSEDMVKDGYEDI+N+DISSVAI+MM+ KY +PQLKY+QMDVRDMS+FED+SFD +I
Sbjct: 61 SLMSEDMVKDGYEDIMNVDISSVAIEMMQTKYASVPQLKYMQMDVRDMSYFEDDSFDTII 120
Query: 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 180
DKGTLDSLMCG++A +SAS+MLGEVSRL+KPGG Y LITYGDPK RM HL YNWKI
Sbjct: 121 DKGTLDSLMCGSDALLSASRMLGEVSRLIKPGGTYFLITYGDPKVRMPHLTRSAYNWKIS 180
Query: 181 LYIIARPGFEKPGGCSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMNDMDEN 240
LYII RPGF++P CSSS KS +E +PIT +G LP ++VLEDPDSHFIY+CKK ++ +E
Sbjct: 181 LYIIPRPGFKRPESCSSSAKSCMEAIPITSEGMLPHDYVLEDPDSHFIYICKKKDEDEEA 240
Query: 241 HIPSYTLKGDIL 252
+PSY L D+L
Sbjct: 241 QLPSYPLMEDVL 252
|
|
| DICTYBASE|DDB_G0282393 DDB_G0282393 "Methyltransferase-like protein 12, mitochondrial" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 386 (140.9 bits), Expect = 1.7e-38, Sum P(2) = 1.7e-38
Identities = 76/172 (44%), Positives = 108/172 (62%)
Query: 13 YGDALYWNARYVQEG--GSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD 70
YG YW+ RY FDWY Y L+ F+ K+ ++LM+GCGN+ + EDM D
Sbjct: 4 YGSLEYWDDRYTNLTIKKDFDWYHGYPTLKVFLNKFFKKKDKILMIGCGNSKLGEDMNDD 63
Query: 71 GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTLDSLM 129
+ DI+N+D S I+ MK + + L+YL MD RDM FF+D FD V DKGTLD++M
Sbjct: 64 EFVDIINMDYSEPLIEYMKERTKGRIGLEYLTMDGRDMKPFFKDNHFDHVFDKGTLDAVM 123
Query: 130 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIEL 181
C + +A Q+L EVSR+LKPGG ++++TYG P++R+ L ++NW EL
Sbjct: 124 CSDDDNENAKQILLEVSRVLKPGGFFIVMTYGSPESRLPLLNNPIHNWTTEL 175
|
|
| ZFIN|ZDB-GENE-070912-214 si:ch211-224b1.4 "si:ch211-224b1.4" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 317 (116.6 bits), Expect = 1.9e-28, P = 1.9e-28
Identities = 67/178 (37%), Positives = 105/178 (58%)
Query: 13 YGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGY 72
Y D YWN RY E SF+W+ ++ +++++ T +LM+GCGN+ +S DM + GY
Sbjct: 28 YKDVDYWNERYRTEE-SFEWFGDFTKFEHLLKQHVGTEENILMLGCGNSALSYDMCQAGY 86
Query: 73 EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGT 132
I N+D SSV ++ M ++++ QL +L MD R ++F D FD V++KGTLD+++
Sbjct: 87 SSITNVDYSSVCVESMAERHKDCAQLNWLCMDARRLAF-PDGVFDVVLEKGTLDAMLVEE 145
Query: 133 NAP--ISAS------QMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELY 182
P IS + Q+L EVSR+LKPGG ++ +T+ P R Y+W I+ Y
Sbjct: 146 TDPWKISENAARLLHQVLLEVSRVLKPGGRFISVTFAQPHFRKRLYAQAEYDWSIKHY 203
|
|
| UNIPROTKB|F1PUB6 ECE2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 60/187 (32%), Positives = 103/187 (55%)
Query: 3 RDVSSCNTYNYGDALYWNARY--VQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGN 60
R++ N + Y + YW+ RY + ++W+ +S+ R + + R+L++GCGN
Sbjct: 11 REIPEQNCW-YREVQYWDRRYRNAADSAPYEWFGDFSSFRALLEPELQPEDRILVLGCGN 69
Query: 61 ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120
+ +S ++ G+ D+ ++D SSV + M+ +Y +P L++ MDVR + F SFD V+
Sbjct: 70 SALSYELFLGGFPDVTSVDYSSVVVAAMQARYAHVPTLRWETMDVRALDF-PSGSFDVVL 128
Query: 121 DKGTLDSLMCGTNAPISAS--------QMLGEVSRLLKPGGIYMLITYGDPKARMIHLKW 172
+KGTLD+L+ G P + S Q+L EVSR+L GG ++ +T P R+ H
Sbjct: 129 EKGTLDALLAGEQDPWNVSSEGVHTMDQVLSEVSRVLVHGGRFISLTSAAPHFRIRHYAQ 188
Query: 173 KVYNWKI 179
Y W +
Sbjct: 189 ARYGWSL 195
|
|
| UNIPROTKB|D4ADU7 LOC100363561 "Protein LOC100363561" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 56/177 (31%), Positives = 100/177 (56%)
Query: 13 YGDALYWNARY--VQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD 70
Y YW+ RY + G ++W+ +++ R + + R+L++GCGN+ +S ++
Sbjct: 20 YRQVQYWDQRYKDAADSGPYEWFGDFASFRALLEPELCPEDRILVLGCGNSALSYELFLG 79
Query: 71 GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 130
G+ ++ ++D S V + M+++Y +P L++ MD+R + F SFD V++KGTLD+L+
Sbjct: 80 GFPNVTSVDYSPVVVAAMQVRYAHVPSLRWETMDIRALDF-PSGSFDVVLEKGTLDALLA 138
Query: 131 GTNAPISAS--------QMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKI 179
G P + S Q+L EVSR+L PGG ++ +T P R+ H Y+W +
Sbjct: 139 GEPDPWNVSSEGVHTVDQVLSEVSRVLVPGGRFISMTPAGPHFRIRHYAQPCYDWSL 195
|
|
| UNIPROTKB|G3N1Q4 ECE2 "Endothelin-converting enzyme 2 region" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 58/177 (32%), Positives = 96/177 (54%)
Query: 13 YGDALYWNARY--VQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD 70
Y + YW+ RY + ++W+ +S R + + R+L++GCGN+ +S ++
Sbjct: 20 YREVQYWDQRYQGAADSAPYEWFGDFSCFRDLLEPELRPLDRILVLGCGNSALSYEIFLG 79
Query: 71 GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 130
G+ D+ ++D SSV + M+ +Y +P L++ MDVR + F SFD V++KGTLD+L+
Sbjct: 80 GFPDVTSVDYSSVVVAAMRARYAHVPTLRWETMDVRALGF-PSGSFDVVLEKGTLDALLT 138
Query: 131 GTNAPISAS--------QMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKI 179
G P + S Q+L EVSR+L P G ++ +T P R H Y W +
Sbjct: 139 GEQDPWTVSSEGVHTVDQVLNEVSRVLVPAGRFISLTSAAPHFRTRHYAQAHYGWSL 195
|
|
| UNIPROTKB|F1PCU5 F1PCU5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 288 (106.4 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 62/152 (40%), Positives = 89/152 (58%)
Query: 12 NYGDALYWNARYVQEGG-SFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD 70
++G YW + Q G +F+WY Y L + KYI +VL++GCGN+ +SE +
Sbjct: 10 DFGSVDYWEKFFQQRGKKAFEWYGSYLELCGVLHKYIKPREKVLVIGCGNSELSEQLYDV 69
Query: 71 GYEDIVNIDISSVAIDMMKMKY-EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129
GY+DIVNIDIS V I MK + PQ+ +L+MD+ M F D SF V+DKGTLD+++
Sbjct: 70 GYQDIVNIDISEVVIKQMKERNASRRPQMSFLKMDMTQMEF-PDASFQVVLDKGTLDAVL 128
Query: 130 CGTNAPI--SASQMLGEVSRLLKPGGIYMLIT 159
+ML EV R+L+ GG Y+ I+
Sbjct: 129 TDEEEKTLQQVDRMLAEVGRVLQVGGRYLCIS 160
|
|
| UNIPROTKB|F1S7S8 METTL13 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 289 (106.8 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 63/151 (41%), Positives = 88/151 (58%)
Query: 13 YGDALYWNARYVQEGG-SFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG 71
+G YW + Q G +F+WY Y L + KYI +VL++GCGN+ +SE + G
Sbjct: 11 FGSVDYWEKFFQQRGKKAFEWYGTYLELCGVLHKYIKPREKVLVIGCGNSELSEQLYDVG 70
Query: 72 YEDIVNIDISSVAIDMMKMKY-EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 130
Y+DIVNIDIS V I MK + PQL +L+MD+ M F D SF V+DKGTLD+++
Sbjct: 71 YQDIVNIDISEVVIKQMKERNASRRPQLSFLKMDMTQMEF-PDASFQVVLDKGTLDAVLT 129
Query: 131 GTNAPI--SASQMLGEVSRLLKPGGIYMLIT 159
+ML EV R+L+ GG Y+ I+
Sbjct: 130 DEEEKTLQQVDRMLAEVGRVLQVGGRYLCIS 160
|
|
| UNIPROTKB|F1PDJ6 METTL13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 288 (106.4 bits), Expect = 2.1e-24, P = 2.1e-24
Identities = 62/152 (40%), Positives = 89/152 (58%)
Query: 12 NYGDALYWNARYVQEGG-SFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD 70
++G YW + Q G +F+WY Y L + KYI +VL++GCGN+ +SE +
Sbjct: 10 DFGSVDYWEKFFQQRGKKAFEWYGSYLELCGVLHKYIKPREKVLVIGCGNSELSEQLYDV 69
Query: 71 GYEDIVNIDISSVAIDMMKMKY-EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129
GY+DIVNIDIS V I MK + PQ+ +L+MD+ M F D SF V+DKGTLD+++
Sbjct: 70 GYQDIVNIDISEVVIKQMKERNASRRPQMSFLKMDMTQMEF-PDASFQVVLDKGTLDAVL 128
Query: 130 CGTNAPI--SASQMLGEVSRLLKPGGIYMLIT 159
+ML EV R+L+ GG Y+ I+
Sbjct: 129 TDEEEKTLQQVDRMLAEVGRVLQVGGRYLCIS 160
|
|
| TAIR|locus:2116174 AT4G34360 "AT4G34360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 67/187 (35%), Positives = 104/187 (55%)
Query: 13 YGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGY 72
Y D YW+ R+ E ++W++ YS + + I SS VL +GCGN+ + E++ KDG
Sbjct: 15 YLDPHYWDERFSSEE-HYEWFKDYSHFQHLIISNIKPSSSVLELGCGNSQLCEELYKDGI 73
Query: 73 EDIVNIDISSVAIDMMKMKY--EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 130
DI ID+SSVA++ M+ + + ++K +Q D+ D+ F + ESFD VI+KGT+D L
Sbjct: 74 VDITCIDLSSVAVEKMQSRLLPKGYKEIKVVQADMLDLPF-DSESFDVVIEKGTMDVLFV 132
Query: 131 GTN-----APISASQMLGE---VSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELY 182
P + S+++ V R+LKP GI++ IT+G P R K + W +E Y
Sbjct: 133 DAGDPWNPRPETVSKVMATLDGVHRVLKPDGIFISITFGQPHFRRPLFKDPKFTWSME-Y 191
Query: 183 IIARPGF 189
GF
Sbjct: 192 NTFGDGF 198
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.1.1 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 252 | |||
| pfam08241 | 92 | pfam08241, Methyltransf_11, Methyltransferase doma | 1e-14 | |
| cd02440 | 107 | cd02440, AdoMet_MTases, S-adenosylmethionine-depen | 1e-12 | |
| pfam13847 | 151 | pfam13847, Methyltransf_31, Methyltransferase doma | 2e-10 | |
| pfam13649 | 97 | pfam13649, Methyltransf_25, Methyltransferase doma | 2e-09 | |
| pfam12847 | 104 | pfam12847, Methyltransf_18, Methyltransferase doma | 9e-09 | |
| PRK08317 | 241 | PRK08317, PRK08317, hypothetical protein; Provisio | 7e-07 | |
| COG2227 | 243 | COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-m | 1e-06 | |
| pfam08242 | 98 | pfam08242, Methyltransf_12, Methyltransferase doma | 2e-06 | |
| TIGR02021 | 219 | TIGR02021, BchM-ChlM, magnesium protoporphyrin O-m | 3e-06 | |
| TIGR01983 | 224 | TIGR01983, UbiG, ubiquinone biosynthesis O-methylt | 8e-06 | |
| pfam13659 | 117 | pfam13659, Methyltransf_26, Methyltransferase doma | 1e-05 | |
| pfam13489 | 154 | pfam13489, Methyltransf_23, Methyltransferase doma | 2e-05 | |
| TIGR02072 | 240 | TIGR02072, BioC, biotin biosynthesis protein BioC | 3e-05 | |
| TIGR02081 | 194 | TIGR02081, metW, methionine biosynthesis protein M | 2e-04 | |
| pfam05724 | 203 | pfam05724, TPMT, Thiopurine S-methyltransferase (T | 2e-04 | |
| TIGR01934 | 223 | TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone | 2e-04 | |
| PRK05134 | 233 | PRK05134, PRK05134, bifunctional 3-demethylubiquin | 2e-04 | |
| COG2226 | 238 | COG2226, UbiE, Methylase involved in ubiquinone/me | 4e-04 | |
| COG0500 | 257 | COG0500, SmtA, SAM-dependent methyltransferases [S | 0.003 | |
| pfam07021 | 193 | pfam07021, MetW, Methionine biosynthesis protein M | 0.003 |
| >gnl|CDD|219759 pfam08241, Methyltransf_11, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 1e-14
Identities = 29/102 (28%), Positives = 50/102 (49%), Gaps = 12/102 (11%)
Query: 56 VGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDES 115
VGCG L++E + + G + +D+S + + + + K++ D D+ F DES
Sbjct: 3 VGCGTGLLAEALARRGGARVTGVDLSPEMLALARKR----APRKFVVGDAEDLP-FPDES 57
Query: 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157
FD V+ L L + L E++R+LKPGG ++
Sbjct: 58 FDVVVSSLVLHHLP-------DPERALREIARVLKPGGKLVI 92
|
Members of this family are SAM dependent methyltransferases. Length = 92 |
| >gnl|CDD|100107 cd02440, AdoMet_MTases, S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 1e-12
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 8/111 (7%)
Query: 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMK--YEEIPQLKYLQMDVRDMS 109
RVL +GCG ++ + + +DIS VA+++ + ++ L+ D ++
Sbjct: 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELP 60
Query: 110 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160
DESFD +I S + ++ L E RLLKPGG+ +L
Sbjct: 61 PEADESFDVII------SDPPLHHLVEDLARFLEEARRLLKPGGVLVLTLV 105
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). Length = 107 |
| >gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-10
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 13/115 (11%)
Query: 52 RVLMVGCGNALMSEDMVKDGYE--DIVNIDISSVAIDMMK--MKYEEIPQLKYLQMDVRD 107
+VL +GCG ++ + + ++V IDIS AI+ K K ++++Q D+ +
Sbjct: 6 KVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQGDIEE 65
Query: 108 M--SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160
+ ED SFD VI L+ L P L E+ R+LKPGG+ ++
Sbjct: 66 LPQLQLEDNSFDVVISNEVLNHL----PDPDKV---LEEIIRVLKPGGVLIVSDP 113
|
This family appears to be have methyltransferase activity. Length = 151 |
| >gnl|CDD|222287 pfam13649, Methyltransf_25, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-09
Identities = 31/102 (30%), Positives = 54/102 (52%), Gaps = 6/102 (5%)
Query: 53 VLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFF 111
+L +GCG + + + G + +DIS A+++ K + + P+++++ D RD+ F
Sbjct: 1 ILDLGCGTGRVLRALARAGPSSVTGVDISKEALELAKERLRDKGPKVRFVVADARDLP-F 59
Query: 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGG 153
E+ SFD VI L +P +L E +RLL+PGG
Sbjct: 60 EEGSFDLVI----CAGLSLDYLSPKQLRALLREAARLLRPGG 97
|
This family appears to be a methyltransferase domain. Length = 97 |
| >gnl|CDD|221804 pfam12847, Methyltransf_18, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 9e-09
Identities = 28/111 (25%), Positives = 54/111 (48%), Gaps = 16/111 (14%)
Query: 51 SRVLMVGCGNALMSEDMVK--DGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVR 106
+RVL +GCG ++ ++ + G + +D+S +++ + + P++ ++Q D
Sbjct: 3 ARVLDIGCGTGSLAIELARLFPGAR-VTGVDLSPEMLELARENAKLALGPRITFVQGDAP 61
Query: 107 DMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157
D + E FDAV G L+ ++L ++ LLKPGG +L
Sbjct: 62 D-ALDLLEGFDAVFIGGGGGDLL----------ELLDALASLLKPGGRLVL 101
|
Protein in this family function as methyltransferases. Length = 104 |
| >gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 7e-07
Identities = 35/128 (27%), Positives = 56/128 (43%), Gaps = 24/128 (18%)
Query: 40 RPFVRKY---------IPTSSRVLMVGCGN----ALMSEDMVKDGYEDIVNIDISSVAID 86
P R+Y + RVL VGCG ++ + +G +V ID S +
Sbjct: 1 LPDFRRYRARTFELLAVQPGDRVLDVGCGPGNDARELARRVGPEG--RVVGIDRSEAMLA 58
Query: 87 MMKM-KYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEV 145
+ K P +++++ D + F D SFDAV L L P ++ L E+
Sbjct: 59 LAKERAAGLGPNVEFVRGDADGLPF-PDGSFDAVRSDRVLQHL----EDP---ARALAEI 110
Query: 146 SRLLKPGG 153
+R+L+PGG
Sbjct: 111 ARVLRPGG 118
|
Length = 241 |
| >gnl|CDD|225137 COG2227, UbiG, 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 1e-06
Identities = 36/125 (28%), Positives = 54/125 (43%), Gaps = 18/125 (14%)
Query: 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSF 110
RVL VGCG ++SE + + G + ID S I++ K+ E + Y Q V D++
Sbjct: 62 RVLDVGCGGGILSEPLARLGAS-VTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLA- 119
Query: 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170
FD V ++ L + L ++L+KPGGI L T I+
Sbjct: 120 SAGGQFDVVT---CMEVLEHVPD----PESFLRACAKLVKPGGILFLST--------INR 164
Query: 171 KWKVY 175
K Y
Sbjct: 165 TLKAY 169
|
Length = 243 |
| >gnl|CDD|219760 pfam08242, Methyltransf_12, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-06
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 10/103 (9%)
Query: 56 VGCGNALMSEDMVKDGYE-DIVNIDISSVAIDMMKMKYEEIPQLKYLQMD--VRDMSFFE 112
+GCG + +++ + +DIS A++ + + L +++ V D +
Sbjct: 3 IGCGTGTLLRALLEALPGLEYTGVDISPAALEAAAERLAALGLLDAVRVRLDVLDAIDLD 62
Query: 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 155
SFD V+ L L A +L + RLLKPGG+
Sbjct: 63 PGSFDVVVASNVLHHL-----ADPR--AVLRNLRRLLKPGGVL 98
|
Members of this family are SAM dependent methyltransferases. Length = 98 |
| >gnl|CDD|233687 TIGR02021, BchM-ChlM, magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 3e-06
Identities = 22/85 (25%), Positives = 38/85 (44%), Gaps = 5/85 (5%)
Query: 45 KYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD 104
K RVL GCG L+S ++ K G + +DIS + M + + + ++ +
Sbjct: 51 KDPLKGKRVLDAGCGTGLLSIELAKRGAI-VKAVDISEQMVQMARNRAQGRDVAGNVEFE 109
Query: 105 VRDMSFFEDESFDAVIDKGTLDSLM 129
V D+ FD V+ +D L+
Sbjct: 110 VNDLLSL-CGEFDIVV---CMDVLI 130
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 219 |
| >gnl|CDD|233668 TIGR01983, UbiG, ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 8e-06
Identities = 35/110 (31%), Positives = 53/110 (48%), Gaps = 10/110 (9%)
Query: 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLK--YLQMDVRDMS 109
RVL VGCG L+SE + + G ++ ID S I++ K+ ++ P LK Y V D++
Sbjct: 48 RVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLA 106
Query: 110 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159
+SFD V L+ + + ++LLKPGGI T
Sbjct: 107 EKGAKSFDVVTCMEVLEHV-------PDPQAFIRACAQLLKPGGILFFST 149
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 224 |
| >gnl|CDD|222295 pfam13659, Methyltransf_26, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 1e-05
Identities = 29/126 (23%), Positives = 48/126 (38%), Gaps = 31/126 (24%)
Query: 52 RVLMVGCGN---ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDV 105
RVL G G+ L + D +V +++ A + + + P+++ + D
Sbjct: 3 RVLDPGAGSGAFLLAAARAGPDA--RVVGVELDPEAAALARRRLALAGLAPRVRVVVGDA 60
Query: 106 RDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQM------------LGEVSRLLKPGG 153
R++ D SFD V+ N P L RLLKPGG
Sbjct: 61 RELLELPDGSFDLVL-----------GNPPYGPRAGDPKDNRDLYDRFLAAALRLLKPGG 109
Query: 154 IYMLIT 159
+ ++IT
Sbjct: 110 VLVVIT 115
|
This family contains methyltransferase domains. Length = 117 |
| >gnl|CDD|222171 pfam13489, Methyltransf_23, Methyltransferase domain | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 2e-05
Identities = 28/144 (19%), Positives = 50/144 (34%), Gaps = 25/144 (17%)
Query: 32 WYQRYSALRPFVRKYIP---TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM 88
QR L + + +P RVL +GCG ++ + + G+ D+ +D S A+ +
Sbjct: 2 RRQRERFLARLLARLLPRLKPGGRVLDIGCGTGILLRLLRERGF-DVTGVDPSPAAVLIF 60
Query: 89 KMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRL 148
+ P +D + L+ L +L ++ L
Sbjct: 61 SLFDAPDPA-------------VLAGKYDLITAFEVLEHL-------PDPPALLQQLREL 100
Query: 149 LKPGGIYMLITYGDPKARMIHLKW 172
LKPGG +LI+
Sbjct: 101 LKPGG-VLLISTPLADDDARLFAN 123
|
This family appears to be a methyltransferase domain. Length = 154 |
| >gnl|CDD|233708 TIGR02072, BioC, biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 22/138 (15%)
Query: 34 QRYSA---LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMK 89
QR A L K I + VL +GCG ++ ++K + + DIS+ + K
Sbjct: 16 QREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIANDISAGMLAQAK 75
Query: 90 MKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPI----SASQMLGEV 145
K E ++++ D + D SFD ++ +N + SQ L E+
Sbjct: 76 TKLSE--NVQFICGDAEKLPLE-DSSFDLIV-----------SNLALQWCDDLSQALSEL 121
Query: 146 SRLLKPGGIYMLITYGDP 163
+R+LKPGG+ T+G
Sbjct: 122 ARVLKPGGLLAFSTFGPG 139
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 240 |
| >gnl|CDD|233713 TIGR02081, metW, methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 2e-04
Identities = 27/86 (31%), Positives = 41/86 (47%), Gaps = 14/86 (16%)
Query: 47 IPTSSRVLMVGCGN----ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ 102
IP SRVL +GCG+ AL+ ++ GY + ID V + + + +Q
Sbjct: 11 IPPGSRVLDLGCGDGELLALLRDEKQVRGYG--IEIDQDGVLACVAR-------GVNVIQ 61
Query: 103 MDV-RDMSFFEDESFDAVIDKGTLDS 127
D+ + F D+SFD VI TL +
Sbjct: 62 GDLDEGLEAFPDKSFDYVILSQTLQA 87
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized [Amino acid biosynthesis, Aspartate family]. Length = 194 |
| >gnl|CDD|218717 pfam05724, TPMT, Thiopurine S-methyltransferase (TPMT) | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 2e-04
Identities = 33/149 (22%), Positives = 57/149 (38%), Gaps = 31/149 (20%)
Query: 41 PFVRKYIPTSS-----RVLMVGCGNALMSEDMV--KDGYEDIVNIDISSVAIDMMKMKYE 93
P + ++ + RVL+ CG AL DMV + +V ++IS +A++ +
Sbjct: 9 PLLVRHWDALNLPPGLRVLVPLCGKAL---DMVWLAEQGHFVVGVEISELAVEKFFAEAG 65
Query: 94 EIPQLKYLQMDVRDMSFFEDE---------------SFDAVIDKGTLDSLMCGTNAPISA 138
P + L ++ E FD + D+ L +L P
Sbjct: 66 LSPPITELS-GFKEYRAGGIELLCGDFFTLPREDLGKFDLIYDRAALCAL-----PPEMR 119
Query: 139 SQMLGEVSRLLKPGGIYMLITYGDPKARM 167
+ ++ LL PGG +LIT P+
Sbjct: 120 PRYAKQMYELLPPGGRGLLITLDYPQTDH 148
|
This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyzes S-methylation of aromatic and heterocyclic sulfhydryl compounds, including anticancer and immunosuppressive thiopurines. Length = 203 |
| >gnl|CDD|233645 TIGR01934, MenG_MenH_UbiE, ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 35/141 (24%), Positives = 60/141 (42%), Gaps = 35/141 (24%)
Query: 50 SSRVLMVGCGNALMSEDMVKDGYED--IVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD 107
+VL V CG ++ ++ K + + +D SS +++ K K E ++++Q D
Sbjct: 40 GQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEA 99
Query: 108 MSFFEDESFDAV-----------IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156
+ FED SFDAV I K L E+ R+LKPGG +
Sbjct: 100 LP-FEDNSFDAVTIAFGLRNVTDIQKA------------------LREMYRVLKPGGRLV 140
Query: 157 LITYGDPKARMIHLKWKVYNW 177
++ + P ++ K Y +
Sbjct: 141 ILEFSKPANALLK---KFYKF 158
|
This model represents a family of methyltransferases involved in the biosynthesis of menaquinone and ubiqinone. Some members such as the UbiE enzyme from E. coli are believed to act in both pathways, while others may act in only the menaquinone pathway. These methyltransferases are members of the UbiE/CoQ family of methyltransferases (pfam01209) which also contains ubiquinone methyltransferases and other methyltransferases. Members of this clade include a wide distribution of bacteria and eukaryotes, but no archaea. An outgroup for this clade is provided by the phosphatidylethanolamine methyltransferase (EC 2.1.1.17) from Rhodobacter sphaeroides. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 223 |
| >gnl|CDD|235350 PRK05134, PRK05134, bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-04
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 29/114 (25%)
Query: 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSF 110
RVL VGCG ++SE M + G D+ ID S I++ ++ E ++ Y Q +++
Sbjct: 51 RVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAA 109
Query: 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEV----------SRLLKPGGI 154
FD V M +ML V ++L+KPGG+
Sbjct: 110 EHPGQFDVVT-------CM----------EMLEHVPDPASFVRACAKLVKPGGL 146
|
Length = 233 |
| >gnl|CDD|225136 COG2226, UbiE, Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 4e-04
Identities = 36/128 (28%), Positives = 57/128 (44%), Gaps = 37/128 (28%)
Query: 47 IPTSSRVLMVGCGNALMSEDMVK-DGYEDIVNIDISS----VAIDMMKMKYEEIPQLKYL 101
I +VL V CG M+ + K G ++V +DIS VA + K+K + + ++++
Sbjct: 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVARE--KLKKKGVQNVEFV 106
Query: 102 QMDVRDMSFFEDESFDAV-----------IDKGTLDSLMCGTNAPISASQMLGEVSRLLK 150
D ++ F D SFDAV IDK L E+ R+LK
Sbjct: 107 VGDAENLPF-PDNSFDAVTISFGLRNVTDIDKA------------------LKEMYRVLK 147
Query: 151 PGGIYMLI 158
PGG +++
Sbjct: 148 PGGRLLVL 155
|
Length = 238 |
| >gnl|CDD|223574 COG0500, SmtA, SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 38.0 bits (85), Expect = 0.003
Identities = 30/165 (18%), Positives = 58/165 (35%), Gaps = 13/165 (7%)
Query: 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSE-DMVKDGYE 73
+ A + L + + +P VL +GCG ++ +
Sbjct: 14 ELYDRLAELLDAFLLLAEELLDLLLVLRLLRLLPGGLGVLDIGCGTGRLALLARLGGRGA 73
Query: 74 DIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMS--FFEDESFDAVIDKGTLDSLM 129
+V +D+S + + + + E + + ++ D F + SFD VI L
Sbjct: 74 YVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH--- 130
Query: 130 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKV 174
+ ++ L E+ R+LKPGG +L L +
Sbjct: 131 -----LLPPAKALRELLRVLKPGGRLVLSDLLRDGLLEGRLAALL 170
|
Length = 257 |
| >gnl|CDD|219269 pfam07021, MetW, Methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.003
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 14/88 (15%)
Query: 43 VRKYIPTSSRVLMVGCGNA----LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQL 98
+ + IP SRVL +GCG+ L+ E+ DG + +D + VA + K L
Sbjct: 7 IARLIPPGSRVLDLGCGDGSLLYLLQEEKQVDGRG--IELDAAGVAECVAK-------GL 57
Query: 99 KYLQMDV-RDMSFFEDESFDAVIDKGTL 125
+Q D + + F D+SFD VI TL
Sbjct: 58 SVIQGDADKGLEHFPDKSFDYVILSQTL 85
|
This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalyzed by the products of the metXW genes and is equivalent to the first step in enterobacteria, gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalyzed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In Pseudomonas putida, as in gram-positive bacteria and certain fungi, the second and third steps are a direct sulfhydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells. Length = 193 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 252 | |||
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.88 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.86 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.83 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.82 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.81 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.81 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.81 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.79 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.78 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.77 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.76 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.76 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.76 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.76 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.76 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.75 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.75 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.74 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.73 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.73 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.73 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.72 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.71 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.71 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.7 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.7 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.7 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.7 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.69 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.69 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.69 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.68 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.68 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.66 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.66 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.66 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.66 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.66 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.65 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.65 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.65 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 99.65 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.65 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.64 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.63 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 99.63 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.62 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 99.61 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.6 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.59 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 99.59 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.59 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.59 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 99.59 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.58 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.58 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.57 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 99.57 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.56 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.54 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.54 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.54 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 99.54 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 99.54 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.53 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 99.53 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.52 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.52 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.52 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 99.51 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.51 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 99.51 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 99.5 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.5 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 99.49 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.49 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.49 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 99.49 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.49 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.48 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 99.48 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 99.47 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.47 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.47 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.46 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.46 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.46 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.46 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 99.46 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 99.45 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.45 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.45 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.44 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 99.44 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 99.42 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.41 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.4 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 99.4 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.39 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.39 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 99.39 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 99.38 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 99.38 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 99.38 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 99.38 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 99.38 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 99.37 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 99.37 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.37 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 99.37 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 99.37 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 99.35 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.34 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.34 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 99.32 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 99.32 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 99.31 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 99.31 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 99.3 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 99.3 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 99.29 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 99.29 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 99.28 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 99.27 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 99.26 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 99.26 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 99.25 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 99.24 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 99.24 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 99.24 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 99.22 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 99.22 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 99.21 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 99.21 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 99.2 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 99.2 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 99.2 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 99.2 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 99.2 | |
| PLN02366 | 308 | spermidine synthase | 99.2 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 99.19 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 99.18 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 99.16 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 99.16 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 99.15 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 99.14 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 99.13 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 99.13 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 99.12 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 99.11 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 99.07 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 99.07 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 99.07 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 99.05 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 99.05 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 99.05 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.04 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 99.03 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 99.02 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 99.01 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 99.01 | |
| PLN02823 | 336 | spermine synthase | 99.01 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 98.99 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.98 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 98.98 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.98 | |
| PLN02476 | 278 | O-methyltransferase | 98.97 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 98.96 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.95 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.95 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.95 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 98.92 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.92 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 98.9 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.89 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 98.88 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 98.88 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 98.88 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 98.87 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.87 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.85 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 98.84 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 98.83 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.82 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.82 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.82 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 98.8 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.8 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 98.79 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 98.76 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 98.75 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 98.74 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 98.73 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 98.73 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.72 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 98.69 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.69 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 98.68 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 98.68 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 98.64 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 98.64 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.63 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.6 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 98.59 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 98.59 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.57 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 98.56 | |
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 98.56 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 98.54 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 98.52 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 98.49 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 98.46 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 98.44 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 98.42 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 98.4 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 98.38 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 98.35 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 98.34 | |
| PF04672 | 267 | Methyltransf_19: S-adenosyl methyltransferase; Int | 98.34 | |
| COG3897 | 218 | Predicted methyltransferase [General function pred | 98.33 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 98.32 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 98.32 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 98.31 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.31 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 98.31 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 98.3 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 98.29 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 98.25 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 98.24 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 98.24 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 98.23 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 98.22 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 98.19 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 98.19 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 98.18 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 98.18 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 98.14 | |
| PF01189 | 283 | Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR | 98.1 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 98.07 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 98.05 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 98.03 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 97.84 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 97.81 | |
| KOG4589 | 232 | consensus Cell division protein FtsJ [Cell cycle c | 97.78 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 97.75 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 97.74 | |
| COG2384 | 226 | Predicted SAM-dependent methyltransferase [General | 97.74 | |
| COG4627 | 185 | Uncharacterized protein conserved in bacteria [Fun | 97.73 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 97.7 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 97.65 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 97.65 | |
| KOG1122 | 460 | consensus tRNA and rRNA cytosine-C5-methylase (nuc | 97.6 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 97.57 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 97.56 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 97.55 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 97.53 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 97.44 | |
| PF06962 | 140 | rRNA_methylase: Putative rRNA methylase; InterPro: | 97.37 | |
| PF11599 | 246 | AviRa: RRNA methyltransferase AviRa; InterPro: IPR | 97.32 | |
| PF05971 | 299 | Methyltransf_10: Protein of unknown function (DUF8 | 97.28 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 97.27 | |
| KOG3115 | 249 | consensus Methyltransferase-like protein [General | 97.24 | |
| KOG1596 | 317 | consensus Fibrillarin and related nucleolar RNA-bi | 97.11 | |
| COG0286 | 489 | HsdM Type I restriction-modification system methyl | 97.08 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 97.08 | |
| KOG2198 | 375 | consensus tRNA cytosine-5-methylases and related e | 97.0 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 96.96 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 96.9 | |
| PHA01634 | 156 | hypothetical protein | 96.9 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 96.84 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 96.83 | |
| PF04989 | 206 | CmcI: Cephalosporin hydroxylase; InterPro: IPR0070 | 96.75 | |
| PF03269 | 177 | DUF268: Caenorhabditis protein of unknown function | 96.74 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.71 | |
| KOG2793 | 248 | consensus Putative N2,N2-dimethylguanosine tRNA me | 96.62 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 96.53 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 96.42 | |
| KOG0024 | 354 | consensus Sorbitol dehydrogenase [Secondary metabo | 96.33 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 96.33 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 96.29 | |
| PF03492 | 334 | Methyltransf_7: SAM dependent carboxyl methyltrans | 96.29 | |
| PF02005 | 377 | TRM: N2,N2-dimethylguanosine tRNA methyltransferas | 96.28 | |
| KOG1099 | 294 | consensus SAM-dependent methyltransferase/cell div | 96.28 | |
| KOG2920 | 282 | consensus Predicted methyltransferase [General fun | 96.21 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 96.12 | |
| COG3129 | 292 | Predicted SAM-dependent methyltransferase [General | 96.07 | |
| PRK13699 | 227 | putative methylase; Provisional | 95.9 | |
| KOG1227 | 351 | consensus Putative methyltransferase [General func | 95.85 | |
| PLN02668 | 386 | indole-3-acetate carboxyl methyltransferase | 95.83 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 95.8 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 95.72 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 95.63 | |
| PF01795 | 310 | Methyltransf_5: MraW methylase family; InterPro: I | 95.62 | |
| PF11312 | 315 | DUF3115: Protein of unknown function (DUF3115); In | 95.62 | |
| COG0275 | 314 | Predicted S-adenosylmethionine-dependent methyltra | 95.6 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 95.57 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 95.38 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 95.23 | |
| TIGR00675 | 315 | dcm DNA-methyltransferase (dcm). All proteins in t | 95.12 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 95.1 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 94.84 | |
| KOG2078 | 495 | consensus tRNA modification enzyme [RNA processing | 94.77 | |
| COG1867 | 380 | TRM1 N2,N2-dimethylguanosine tRNA methyltransferas | 94.64 | |
| COG4301 | 321 | Uncharacterized conserved protein [Function unknow | 94.59 | |
| PRK10458 | 467 | DNA cytosine methylase; Provisional | 94.52 | |
| TIGR00027 | 260 | mthyl_TIGR00027 methyltransferase, putative, TIGR0 | 94.51 | |
| COG3510 | 237 | CmcI Cephalosporin hydroxylase [Defense mechanisms | 94.48 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 94.42 | |
| COG1255 | 129 | Uncharacterized protein conserved in archaea [Func | 94.37 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 94.27 | |
| COG2933 | 358 | Predicted SAM-dependent methyltransferase [General | 94.19 | |
| KOG2539 | 491 | consensus Mitochondrial/chloroplast ribosome small | 94.17 | |
| PF10354 | 166 | DUF2431: Domain of unknown function (DUF2431); Int | 94.03 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.99 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 93.97 | |
| PF11899 | 380 | DUF3419: Protein of unknown function (DUF3419); In | 93.95 | |
| PF10237 | 162 | N6-adenineMlase: Probable N6-adenine methyltransfe | 93.87 | |
| PF02636 | 252 | Methyltransf_28: Putative S-adenosyl-L-methionine- | 93.86 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 93.82 | |
| COG1565 | 370 | Uncharacterized conserved protein [Function unknow | 93.69 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 93.35 | |
| PF05711 | 248 | TylF: Macrocin-O-methyltransferase (TylF); InterPr | 93.29 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 93.08 | |
| KOG1253 | 525 | consensus tRNA methyltransferase [Translation, rib | 92.82 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 92.66 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 92.5 | |
| PRK05786 | 238 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 92.42 | |
| PF03686 | 127 | UPF0146: Uncharacterised protein family (UPF0146); | 92.13 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 92.11 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 91.94 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 91.91 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 91.76 | |
| KOG2651 | 476 | consensus rRNA adenine N-6-methyltransferase [RNA | 91.59 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 91.53 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 91.31 | |
| COG1568 | 354 | Predicted methyltransferases [General function pre | 91.15 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 91.12 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 90.98 | |
| COG1062 | 366 | AdhC Zn-dependent alcohol dehydrogenases, class II | 90.93 | |
| PF05206 | 259 | TRM13: Methyltransferase TRM13; InterPro: IPR00787 | 90.88 | |
| KOG1201 | 300 | consensus Hydroxysteroid 17-beta dehydrogenase 11 | 90.51 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 90.29 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 89.64 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 89.59 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 89.56 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 89.42 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.41 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 89.05 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 89.04 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 88.86 | |
| KOG3924 | 419 | consensus Putative protein methyltransferase invol | 88.85 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 88.76 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 88.66 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 88.59 | |
| TIGR00497 | 501 | hsdM type I restriction system adenine methylase ( | 88.48 | |
| PLN02827 | 378 | Alcohol dehydrogenase-like | 88.39 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 88.26 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 88.24 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 88.22 | |
| KOG0821 | 326 | consensus Predicted ribosomal RNA adenine dimethyl | 88.16 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 88.05 | |
| PRK10309 | 347 | galactitol-1-phosphate dehydrogenase; Provisional | 87.99 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 87.98 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 87.59 | |
| COG3315 | 297 | O-Methyltransferase involved in polyketide biosynt | 87.56 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 87.49 | |
| PRK08324 | 681 | short chain dehydrogenase; Validated | 87.48 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 86.83 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 86.82 | |
| PF04072 | 183 | LCM: Leucine carboxyl methyltransferase; InterPro: | 86.55 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 86.46 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 86.13 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 86.07 | |
| COG1179 | 263 | Dinucleotide-utilizing enzymes involved in molybdo | 86.0 | |
| PRK06701 | 290 | short chain dehydrogenase; Provisional | 85.87 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.64 | |
| PRK07576 | 264 | short chain dehydrogenase; Provisional | 85.31 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 85.15 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 85.15 | |
| TIGR02818 | 368 | adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr | 85.13 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 84.88 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 84.86 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 84.81 | |
| PRK07806 | 248 | short chain dehydrogenase; Provisional | 84.19 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 84.04 | |
| PF02086 | 260 | MethyltransfD12: D12 class N6 adenine-specific DNA | 83.72 | |
| cd08300 | 368 | alcohol_DH_class_III class III alcohol dehydrogena | 83.34 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 83.31 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 83.26 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 83.25 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 82.98 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 82.24 | |
| TIGR02819 | 393 | fdhA_non_GSH formaldehyde dehydrogenase, glutathio | 82.22 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 82.04 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 81.97 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 81.94 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.93 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 81.84 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.77 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 81.4 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 81.35 | |
| cd08277 | 365 | liver_alcohol_DH_like Liver alcohol dehydrogenase. | 81.24 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 80.99 | |
| cd08301 | 369 | alcohol_DH_plants Plant alcohol dehydrogenase. NAD | 80.8 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 80.64 | |
| COG0863 | 302 | DNA modification methylase [DNA replication, recom | 80.62 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 80.38 | |
| cd08238 | 410 | sorbose_phosphate_red L-sorbose-1-phosphate reduct | 80.37 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 80.27 | |
| COG4017 | 254 | Uncharacterized protein conserved in archaea [Func | 80.19 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 80.19 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 80.14 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 80.06 |
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-23 Score=165.36 Aligned_cols=167 Identities=24% Similarity=0.413 Sum_probs=89.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||||.++..+++. + ..+|+++|+|+.|++.|+++.... .+++++++|+++++ +++++||+|++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp-~~d~sfD~v~~~ 123 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLP-FPDNSFDAVTCS 123 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB---S-TT-EEEEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhc-CCCCceeEEEHH
Confidence 356779999999999999999886 3 469999999999999999998643 38999999999999 999999999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhccccccceeEEEEEecCCCCCCCCCCC--CCCc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFEKPGGCS--SSMK 200 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 200 (252)
+.++.+ .++.+.+++++|+|||||.+++.++..|...... ..+.++ ...++|..|.-+..... ..+.
T Consensus 124 fglrn~-------~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~---~~~~~y-~~~ilP~~g~l~~~~~~~Y~yL~ 192 (233)
T PF01209_consen 124 FGLRNF-------PDRERALREMYRVLKPGGRLVILEFSKPRNPLLR---ALYKFY-FKYILPLIGRLLSGDREAYRYLP 192 (233)
T ss_dssp S-GGG--------SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHH---HHHHH-------------------------
T ss_pred hhHHhh-------CCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhh---ceeeee-ecccccccccccccccccccccc
Confidence 999999 8899999999999999999999999887653222 223333 22455554433222211 1111
Q ss_pred -ccCCCcccCCCCCCccccccCCCCc
Q 025475 201 -SYLEPVPITDDGQLPAEFVLEDPDS 225 (252)
Q Consensus 201 -~~~~~~~~~~~~~~~~~~gf~~~~~ 225 (252)
+...-.+..+...+++++||..+..
T Consensus 193 ~Si~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 193 ESIRRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp --------------------------
T ss_pred cccccccccccccccccccccccccc
Confidence 2223333456666899999997763
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4e-21 Score=154.00 Aligned_cols=109 Identities=28% Similarity=0.527 Sum_probs=100.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
++.+|||+|||||.++..+++. |.++++++|+|+.|++.++++..+. .+++++++|++++| +++.+||+|.+...+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LP-f~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLP-FPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCC-CCCCccCEEEeeehh
Confidence 6889999999999999999998 4679999999999999999999653 25999999999999 999999999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
+++ .+..++|+|++|+|||||++++.++..|..
T Consensus 130 rnv-------~d~~~aL~E~~RVlKpgG~~~vle~~~p~~ 162 (238)
T COG2226 130 RNV-------TDIDKALKEMYRVLKPGGRLLVLEFSKPDN 162 (238)
T ss_pred hcC-------CCHHHHHHHHHHhhcCCeEEEEEEcCCCCc
Confidence 999 899999999999999999999999887643
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-21 Score=160.17 Aligned_cols=183 Identities=17% Similarity=0.237 Sum_probs=134.0
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCC
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~---~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~ 114 (252)
.++...++++.+|||+|||+|..+..+++. ...+++++|+|+.|++.|++++... .+++++++|+.+.+ ++
T Consensus 48 ~~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~-~~-- 124 (247)
T PRK15451 48 MLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-IE-- 124 (247)
T ss_pred HHHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCC-CC--
Confidence 334455677889999999999999888773 3459999999999999999998542 36899999998876 43
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh-hhhhhccccccceeEEEEEecCCCCCCCC
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK-ARMIHLKWKVYNWKIELYIIARPGFEKPG 193 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (252)
.+|+|+++.++||+ ++.++..++++++++|+|||.+++.+...+. ...... ....|. ......|+....
T Consensus 125 ~~D~vv~~~~l~~l-----~~~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~~~~~~--~~~~~~---~~~~~~g~s~~e 194 (247)
T PRK15451 125 NASMVVLNFTLQFL-----EPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGEL--LFNMHH---DFKRANGYSELE 194 (247)
T ss_pred CCCEEehhhHHHhC-----CHHHHHHHHHHHHHhcCCCCEEEEEEecCCCcchhHHH--HHHHHH---HHHHHcCCCHHH
Confidence 59999999999999 6677889999999999999999998844221 111111 011111 111234555433
Q ss_pred C--CCCCCcccCCCcccCCCCCCccccccCCCCceE------EEEEEecCC
Q 025475 194 G--CSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHF------IYVCKKMND 236 (252)
Q Consensus 194 ~--~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~------~~~~~K~~~ 236 (252)
. ..+.+++...+.++.....|++++||..+.++| .++|+|++.
T Consensus 195 i~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~~~~~~~~f~~~~a~k~~~ 245 (247)
T PRK15451 195 ISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKAED 245 (247)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHHcCchhHHHHHHHHhHHHHhheeccc
Confidence 3 123455677888899999999999999999655 477777543
|
|
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.82 E-value=3e-19 Score=142.62 Aligned_cols=139 Identities=19% Similarity=0.314 Sum_probs=108.9
Q ss_pred hhHHHHhccCCCceeeeccchhhHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--
Q 025475 17 LYWNARYVQEGGSFDWYQRYSALRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-- 93 (252)
Q Consensus 17 ~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~-- 93 (252)
++|+++|......+.-....+.+.+++... .+++.+|||+|||.|..+..++++|+ +|+|+|+|+.+++.+.....
T Consensus 1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~-~V~gvD~S~~Ai~~~~~~~~~~ 79 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGH-RVLGVELSEIAVEQFFAENGLT 79 (213)
T ss_pred ChHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCC-eEEEEeCCHHHHHHHHHHcCCC
Confidence 489999987755443333344455555542 25667999999999999999999998 89999999999998644221
Q ss_pred ------------CCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 94 ------------EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 94 ------------~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
...+++++++|+.+++....++||.|+...+++|+ +++.+...++.+.++|+|||++++.++.
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l-----~~~~R~~~~~~l~~lLkpgG~~ll~~~~ 154 (213)
T TIGR03840 80 PTVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIAL-----PEEMRQRYAAHLLALLPPGARQLLITLD 154 (213)
T ss_pred cceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccC-----CHHHHHHHHHHHHHHcCCCCeEEEEEEE
Confidence 12368899999998762224679999999999999 8899999999999999999987776654
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-20 Score=143.96 Aligned_cols=133 Identities=29% Similarity=0.502 Sum_probs=108.1
Q ss_pred HHhccCCCceeeeccchhhH-HHHHhhCC-----CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 21 ARYVQEGGSFDWYQRYSALR-PFVRKYIP-----TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 21 ~~y~~~~~~~~~~~~~~~l~-~~~~~~~~-----~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
..|....+.+.-++....++ .++..... ++.+|||+|||.|.++..+++.|. .|+|+|+++.+|+.|+.+...
T Consensus 25 ~~wwd~~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga-~VtgiD~se~~I~~Ak~ha~e 103 (243)
T COG2227 25 SRWWDPEGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGA-SVTGIDASEKPIEVAKLHALE 103 (243)
T ss_pred hhhcCCCCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCC-eeEEecCChHHHHHHHHhhhh
Confidence 45555555565555554443 23444433 678999999999999999999995 999999999999999998765
Q ss_pred CC-CCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 95 IP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 95 ~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.+ .+.+.+..++++. ...++||+|+|..+++|+ +++..+++.|.+++||||.+++++.++
T Consensus 104 ~gv~i~y~~~~~edl~-~~~~~FDvV~cmEVlEHv-------~dp~~~~~~c~~lvkP~G~lf~STinr 164 (243)
T COG2227 104 SGVNIDYRQATVEDLA-SAGGQFDVVTCMEVLEHV-------PDPESFLRACAKLVKPGGILFLSTINR 164 (243)
T ss_pred ccccccchhhhHHHHH-hcCCCccEEEEhhHHHcc-------CCHHHHHHHHHHHcCCCcEEEEecccc
Confidence 43 5678888888876 444899999999999999 999999999999999999999999764
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.7e-19 Score=140.20 Aligned_cols=139 Identities=19% Similarity=0.330 Sum_probs=108.5
Q ss_pred ChhhHHHHhccCCCceeeeccchhhHHHHHh-hCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc
Q 025475 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRK-YIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 93 (252)
Q Consensus 15 ~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~ 93 (252)
++++|+++|.+....+.-....+.+.+.+.. ..+++.+|||+|||.|..+..++++|. +|+|||+|+.+++.+.....
T Consensus 2 ~~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~-~V~avD~s~~Ai~~~~~~~~ 80 (218)
T PRK13255 2 DPDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGH-EVLGVELSELAVEQFFAENG 80 (218)
T ss_pred CHhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCC-eEEEEccCHHHHHHHHHHcC
Confidence 3679999998876544333334445555543 235667999999999999999999987 89999999999998743211
Q ss_pred --------------CCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 94 --------------EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 94 --------------~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...++++.++|+.++.....+.||.|+...+++|+ +++.+..++..+.++|+|||++++.+
T Consensus 81 l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l-----~~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 81 LTPQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIAL-----PEEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred CCccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhC-----CHHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 12368899999998852233589999999999999 88999999999999999999766544
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.5e-19 Score=123.63 Aligned_cols=95 Identities=31% Similarity=0.571 Sum_probs=84.1
Q ss_pred EEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCC
Q 025475 54 LMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN 133 (252)
Q Consensus 54 LD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~ 133 (252)
||+|||+|..+..+++.+..+++++|+++.+++.++++... ..+.+.++|+.+++ +++++||+|++..+++|+
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~-~~~~~~~~d~~~l~-~~~~sfD~v~~~~~~~~~----- 73 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKN-EGVSFRQGDAEDLP-FPDNSFDVVFSNSVLHHL----- 73 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTT-STEEEEESBTTSSS-S-TT-EEEEEEESHGGGS-----
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccc-cCchheeehHHhCc-cccccccccccccceeec-----
Confidence 89999999999999999555999999999999999999854 35669999999998 999999999999999999
Q ss_pred ChhhHHHHHHHHHHcccCCcEEEE
Q 025475 134 APISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 134 ~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
+++.++++++.|+|||||.+++
T Consensus 74 --~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 74 --EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp --SHHHHHHHHHHHHEEEEEEEEE
T ss_pred --cCHHHHHHHHHHHcCcCeEEeC
Confidence 9999999999999999999975
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.9e-18 Score=142.66 Aligned_cols=110 Identities=22% Similarity=0.401 Sum_probs=96.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhc-----CCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYE-----EIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~-----~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
++++.+|||+|||+|.++..+++. + ..+++|+|+|+.|++.|+++.. ...+++++++|+.+++ +++++||+|
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp-~~~~sfD~V 149 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP-FDDCYFDAI 149 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC-CCCCCEeEE
Confidence 456779999999999999988876 3 3589999999999999987653 1247899999999998 888899999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+++.++||+ .++..++++++|+|||||++++.++..+.
T Consensus 150 ~~~~~l~~~-------~d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 150 TMGYGLRNV-------VDRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred EEecccccC-------CCHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 999999999 78999999999999999999999987654
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.6e-18 Score=129.10 Aligned_cols=186 Identities=25% Similarity=0.431 Sum_probs=134.3
Q ss_pred CCCCCCCChhhHHHHhccCCCc--------eeeeccchh--hHHHHHhh-----CCCCC-cEEEEcccCcHhHHHHHHcC
Q 025475 8 CNTYNYGDALYWNARYVQEGGS--------FDWYQRYSA--LRPFVRKY-----IPTSS-RVLMVGCGNALMSEDMVKDG 71 (252)
Q Consensus 8 ~~~~~~~~~~~w~~~y~~~~~~--------~~~~~~~~~--l~~~~~~~-----~~~~~-~vLD~G~G~G~~~~~l~~~~ 71 (252)
-+.+..|.++|||+.|..+-.. --|+..... +..++... +.+.. +|||+|||+|.+...|++.|
T Consensus 10 l~~S~LGtK~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~eg 89 (227)
T KOG1271|consen 10 LGQSKLGTKSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEG 89 (227)
T ss_pred ccccccchHHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhc
Confidence 4556789999999998754222 236654322 23333322 34444 99999999999999999998
Q ss_pred -CCcEEEEeCCHHHHHHHHHhhcCC--C-CCeEEEccccCCCCCCCCCeeEEEeccchhhhc-CCCCChhhHHHHHHHHH
Q 025475 72 -YEDIVNIDISSVAIDMMKMKYEEI--P-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM-CGTNAPISASQMLGEVS 146 (252)
Q Consensus 72 -~~~v~~vD~s~~~i~~a~~~~~~~--~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~-~~~~~~~~~~~~l~~~~ 146 (252)
....+|+|+|+.+++.|+...++. + .|++.+.|+.+.. +..++||+|+-.+++..+. ++......+.-.+..+.
T Consensus 90 f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~-~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~ 168 (227)
T KOG1271|consen 90 FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPD-FLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVE 168 (227)
T ss_pred CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCc-ccccceeEEeecCceeeeecCCCCcccceeeehhhHh
Confidence 445999999999999999887543 2 4999999999986 7888999999999999874 33333344577789999
Q ss_pred HcccCCcEEEEEEcCChhhhhhhccccccceeEEEEEecCCCCCCCCCCC
Q 025475 147 RLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFEKPGGCS 196 (252)
Q Consensus 147 ~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (252)
++|+|||+++|..++.-...+..... ..+ ......+|.+-|.+.+...
T Consensus 169 ~ll~~~gifvItSCN~T~dELv~~f~-~~~-f~~~~tvp~ptF~FgG~~G 216 (227)
T KOG1271|consen 169 KLLSPGGIFVITSCNFTKDELVEEFE-NFN-FEYLSTVPTPTFMFGGSVG 216 (227)
T ss_pred hccCCCcEEEEEecCccHHHHHHHHh-cCC-eEEEEeeccceEEeccccc
Confidence 99999999999998765443333311 112 2345667777788877643
|
|
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.7e-18 Score=121.33 Aligned_cols=105 Identities=30% Similarity=0.426 Sum_probs=87.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc---CCCCCeEEEccc-cCCCCCCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE---EIPQLKYLQMDV-RDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~---~~~~v~~~~~d~-~~~~~~~~~~~D~v~~~~ 123 (252)
|+.+|||+|||+|.++..+++. ...+++++|+|+.+++.++++.. ..++++++++|+ .... ..++||+|++..
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~~~D~v~~~~ 78 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPD--FLEPFDLVICSG 78 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTT--TSSCEEEEEECS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcc--cCCCCCEEEECC
Confidence 4679999999999999999993 34589999999999999999982 235899999999 4443 345699999999
Q ss_pred -chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 -TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 -~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+++++ .+.+++..+++++.+.|+|||++++.+
T Consensus 79 ~~~~~~----~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 79 FTLHFL----LPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GSGGGC----CHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred Cccccc----cchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 66644 133678999999999999999999876
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-18 Score=140.63 Aligned_cols=115 Identities=19% Similarity=0.340 Sum_probs=96.9
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCee
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D 117 (252)
.++....+++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.|+++.... ++++++++|+.++....+++||
T Consensus 36 ~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~-~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD 114 (255)
T PRK11036 36 RLLAELPPRPLRVLDAGGGEGQTAIKLAELGH-QVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVD 114 (255)
T ss_pred HHHHhcCCCCCEEEEeCCCchHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCC
Confidence 34433334566999999999999999999875 8999999999999999987543 3689999999886435567899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+|++..+++|+ .++..+++++.++|+|||.+++..++..
T Consensus 115 ~V~~~~vl~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~n~~ 153 (255)
T PRK11036 115 LILFHAVLEWV-------ADPKSVLQTLWSVLRPGGALSLMFYNAN 153 (255)
T ss_pred EEEehhHHHhh-------CCHHHHHHHHHHHcCCCeEEEEEEECcc
Confidence 99999999999 7888999999999999999998876643
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=137.95 Aligned_cols=118 Identities=16% Similarity=0.338 Sum_probs=99.8
Q ss_pred hHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCee
Q 025475 39 LRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 39 l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D 117 (252)
...++... ++++.+|||+|||+|..+..++.....+|+++|+|+.+++.++++....+++.++++|+.+.+ +++++||
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~-~~~~~FD 119 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKD-FPENTFD 119 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCC-CCCCCeE
Confidence 44444443 467789999999999999888775334899999999999999998765557999999998877 7788999
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+|++..+++|+ +.+++..++++++++|||||.+++.++..
T Consensus 120 ~V~s~~~l~h~-----~~~d~~~~l~~i~r~LkPGG~lvi~d~~~ 159 (263)
T PTZ00098 120 MIYSRDAILHL-----SYADKKKLFEKCYKWLKPNGILLITDYCA 159 (263)
T ss_pred EEEEhhhHHhC-----CHHHHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 99999999988 55689999999999999999999988643
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.9e-18 Score=133.11 Aligned_cols=128 Identities=21% Similarity=0.414 Sum_probs=99.8
Q ss_pred ChhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 15 ~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
+..||...|..... .+.+.+.+. ..++.+|||+|||+|.++..+++.|. +|+++|+|+.+++.++++.+.
T Consensus 5 ~~~~~~~~~~~~~~-------~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~-~V~gvD~S~~~i~~a~~~~~~ 74 (197)
T PRK11207 5 DENYFTDKYGLTRT-------HSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGF-DVTAWDKNPMSIANLERIKAA 74 (197)
T ss_pred hHHHHHHhcCCCCC-------hHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHH
Confidence 45577776653322 223333332 23457999999999999999999875 899999999999999987743
Q ss_pred --CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 95 --IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 95 --~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..++++.+.|+.+.+ + .++||+|+++.++||+ ++.++..+++++.++|+|||++++..
T Consensus 75 ~~~~~v~~~~~d~~~~~-~-~~~fD~I~~~~~~~~~-----~~~~~~~~l~~i~~~LkpgG~~~~~~ 134 (197)
T PRK11207 75 ENLDNLHTAVVDLNNLT-F-DGEYDFILSTVVLMFL-----EAKTIPGLIANMQRCTKPGGYNLIVA 134 (197)
T ss_pred cCCCcceEEecChhhCC-c-CCCcCEEEEecchhhC-----CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 235888899988776 4 4579999999999998 77789999999999999999976644
|
|
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=130.66 Aligned_cols=142 Identities=15% Similarity=0.175 Sum_probs=115.5
Q ss_pred CChhhHHHHhccCCCceeeeccchhhHHHHHhhC-CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh
Q 025475 14 GDALYWNARYVQEGGSFDWYQRYSALRPFVRKYI-PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY 92 (252)
Q Consensus 14 ~~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~ 92 (252)
-+.++|+++|.+....|.-....+.|.+.+.... +++.+||+.|||.|..+..|+++|+ +|+|+|+|+.+++.+.+..
T Consensus 7 ~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~-~V~GvDlS~~Ai~~~~~e~ 85 (226)
T PRK13256 7 NNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGV-KVIGIELSEKAVLSFFSQN 85 (226)
T ss_pred CCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCC-cEEEEecCHHHHHHHHHHc
Confidence 3678999999998777655444455556665543 3567999999999999999999998 7999999999999986632
Q ss_pred c--------------CCCCCeEEEccccCCCC--CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 93 E--------------EIPQLKYLQMDVRDMSF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 93 ~--------------~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
. ...++++.++|+++++. -..++||+|+...+++++ +++.+.+.++.+.++|+|||.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Al-----pp~~R~~Y~~~l~~lL~pgg~ll 160 (226)
T PRK13256 86 TINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIAL-----PNDLRTNYAKMMLEVCSNNTQIL 160 (226)
T ss_pred CCCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcC-----CHHHHHHHHHHHHHHhCCCcEEE
Confidence 0 12378999999999862 123589999999999999 99999999999999999999988
Q ss_pred EEEcC
Q 025475 157 LITYG 161 (252)
Q Consensus 157 i~~~~ 161 (252)
+..+.
T Consensus 161 ll~~~ 165 (226)
T PRK13256 161 LLVME 165 (226)
T ss_pred EEEEe
Confidence 87753
|
|
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-18 Score=136.80 Aligned_cols=163 Identities=17% Similarity=0.273 Sum_probs=120.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C------CCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEccccCCCCCCCCCe
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G------YEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~------~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~ 116 (252)
+++++||++||||..+..+.++ + ..+|+++|+|++|++.++++.... ..+.++++|++++| +++.+|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~Lp-Fdd~s~ 178 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLP-FDDDSF 178 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCC-CCCCcc
Confidence 4569999999999999999887 2 368999999999999999988432 24899999999999 999999
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh-hhhhhccccccceeEEEEEecCCCCCCCCCC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK-ARMIHLKWKVYNWKIELYIIARPGFEKPGGC 195 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (252)
|..++.+.+... .++.+.++++||+|||||++.+.++..-. ....++ ...| ....+|..|..+.+..
T Consensus 179 D~yTiafGIRN~-------th~~k~l~EAYRVLKpGGrf~cLeFskv~~~~l~~f---y~~y--sf~VlpvlG~~iagd~ 246 (296)
T KOG1540|consen 179 DAYTIAFGIRNV-------THIQKALREAYRVLKPGGRFSCLEFSKVENEPLKWF---YDQY--SFDVLPVLGEIIAGDR 246 (296)
T ss_pred eeEEEecceecC-------CCHHHHHHHHHHhcCCCcEEEEEEccccccHHHHHH---HHhh--hhhhhchhhHhhhhhH
Confidence 999986555555 99999999999999999999999987655 233333 2222 2345677664444432
Q ss_pred CCC---CcccCCCcccCCCCCCccccccCCCC
Q 025475 196 SSS---MKSYLEPVPITDDGQLPAEFVLEDPD 224 (252)
Q Consensus 196 ~~~---~~~~~~~~~~~~~~~~~~~~gf~~~~ 224 (252)
.+. .+++..-.+.++...+.+++||..+.
T Consensus 247 ~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 247 KSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred hhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 211 12233333333555578889998775
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.75 E-value=7.5e-18 Score=142.09 Aligned_cols=106 Identities=20% Similarity=0.408 Sum_probs=93.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
++.+|||+|||+|.++..++..|. +|+|+|+++++++.|+.+.... .+++++++|+.+++ +.+++||+|++..++
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~-~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~-~~~~~FD~Vi~~~vL 208 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGA-TVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLA-DEGRKFDAVLSLEVI 208 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhh-hccCCCCEEEEhhHH
Confidence 455899999999999999988765 8999999999999999876432 37899999998887 667899999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+|+ .++..+++++.++|||||.+++.+.+..
T Consensus 209 eHv-------~d~~~~L~~l~r~LkPGG~liist~nr~ 239 (322)
T PLN02396 209 EHV-------ANPAEFCKSLSALTIPNGATVLSTINRT 239 (322)
T ss_pred Hhc-------CCHHHHHHHHHHHcCCCcEEEEEECCcC
Confidence 999 8889999999999999999999987653
|
|
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=130.64 Aligned_cols=106 Identities=22% Similarity=0.388 Sum_probs=91.1
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++++.+|||+|||+|..+..+++. +..+++|+|+|+.|++.|+++. +++.+.++|+.+ + +++++||+|+++.+
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~---~~~~~~~~d~~~-~-~~~~sfD~V~~~~v 114 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL---PNINIIQGSLFD-P-FKDNFFDLVLTKGV 114 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC---CCCcEEEeeccC-C-CCCCCEEEEEECCh
Confidence 4567779999999999999999886 4468999999999999999875 357888999888 5 77889999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++|+ ++++..++++++++++ ++++++.++..|
T Consensus 115 L~hl-----~p~~~~~~l~el~r~~--~~~v~i~e~~~~ 146 (204)
T TIGR03587 115 LIHI-----NPDNLPTAYRELYRCS--NRYILIAEYYNP 146 (204)
T ss_pred hhhC-----CHHHHHHHHHHHHhhc--CcEEEEEEeeCC
Confidence 9999 7788999999999997 568888886543
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.5e-17 Score=140.99 Aligned_cols=106 Identities=21% Similarity=0.348 Sum_probs=94.0
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++....+|+|+|+|+.+++.++++.... ++++++++|+.+.+ +++++||+|++..+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~-~~~~~FD~V~s~~~ 195 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQP-FEDGQFDLVWSMES 195 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCC-CCCCCccEEEECCc
Confidence 456799999999999999999874349999999999999999876432 36899999999987 88899999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++|+ .+..+++++++++|||||.+++.++.
T Consensus 196 ~~h~-------~d~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 196 GEHM-------PDKRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred hhcc-------CCHHHHHHHHHHHcCCCcEEEEEEec
Confidence 9999 78899999999999999999998764
|
|
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-17 Score=125.52 Aligned_cols=138 Identities=21% Similarity=0.419 Sum_probs=100.9
Q ss_pred CChhhHHHHhccCCCcee----eeccchhhHHHHHhhCCCC--CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHH
Q 025475 14 GDALYWNARYVQEGGSFD----WYQRYSALRPFVRKYIPTS--SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDM 87 (252)
Q Consensus 14 ~~~~~w~~~y~~~~~~~~----~~~~~~~l~~~~~~~~~~~--~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~ 87 (252)
++.++|++.+.+ .++|. ||...+. ...+...++.+ .++||+|||.|.++..|+.+ ..+++++|+|+.+++.
T Consensus 4 ~~~~~l~~~la~-~DPW~~~~~~YE~~K~-~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~r-Cd~LlavDis~~Al~~ 80 (201)
T PF05401_consen 4 DNYQLLNRELAN-DDPWGFETSWYERRKY-RATLLAALPRRRYRRALEVGCSIGVLTERLAPR-CDRLLAVDISPRALAR 80 (201)
T ss_dssp SHHHHHHHHHTS-SSGGGTTT-HHHHHHH-HHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGG-EEEEEEEES-HHHHHH
T ss_pred cHHHHHHHHhCC-CCCCCCCCCHHHHHHH-HHHHHHhcCccccceeEecCCCccHHHHHHHHh-hCceEEEeCCHHHHHH
Confidence 456777776654 35554 4443221 12232223333 48999999999999999998 4589999999999999
Q ss_pred HHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCCh-hhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 88 MKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAP-ISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 88 a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~-~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|++++.+.++|++++.|+.+. .+.++||+|+++.+++++ .+ +++..++..+.+.|+|||.+++.++.
T Consensus 81 Ar~Rl~~~~~V~~~~~dvp~~--~P~~~FDLIV~SEVlYYL-----~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 81 ARERLAGLPHVEWIQADVPEF--WPEGRFDLIVLSEVLYYL-----DDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp HHHHTTT-SSEEEEES-TTT-----SS-EEEEEEES-GGGS-----SSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred HHHhcCCCCCeEEEECcCCCC--CCCCCeeEEEEehHhHcC-----CCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 999999888999999999776 477899999999999999 53 67899999999999999999998864
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-17 Score=124.07 Aligned_cols=105 Identities=30% Similarity=0.576 Sum_probs=90.9
Q ss_pred CCCcEEEEcccCcHhHHHHHH-cC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC-CCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVK-DG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF-FEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~-~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~-~~~~~~D~v~~~~ 123 (252)
.+.+|||+|||+|.++..+++ .+ ..+++|+|+|+.|++.|+.+++. .++++++++|+.+++. ++ +.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELE-EKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSS-TTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccC-CCeeEEEEcC
Confidence 467999999999999999994 33 56899999999999999998753 3489999999999642 22 7899999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+++|+ .+...+++++.++|+++|.+++.++.
T Consensus 82 ~l~~~-------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHF-------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGT-------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhc-------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 99999 88899999999999999999998876
|
... |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=131.59 Aligned_cols=138 Identities=25% Similarity=0.403 Sum_probs=109.0
Q ss_pred hhhHHHHhccCCCceeeeccchhhHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-
Q 025475 16 ALYWNARYVQEGGSFDWYQRYSALRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE- 93 (252)
Q Consensus 16 ~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~- 93 (252)
.++|+++|.+....|+.....+.|.+++... .+++.+||..|||.|.....|+++|+ +|+|+|+|+.+++.+.+...
T Consensus 3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~-~VvGvDls~~Ai~~~~~e~~~ 81 (218)
T PF05724_consen 3 PEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGH-DVVGVDLSPTAIEQAFEENNL 81 (218)
T ss_dssp HHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTE-EEEEEES-HHHHHHHHHHCTT
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCC-eEEEEecCHHHHHHHHHHhcc
Confidence 6899999999988888777777788887773 45566999999999999999999987 99999999999999844321
Q ss_pred -------------CCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 94 -------------EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 94 -------------~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...+|++.++|+++++....++||+|+-..+++.+ +++.+.+..+.+.++|+|||.+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Al-----pp~~R~~Ya~~l~~ll~p~g~~lLi~ 155 (218)
T PF05724_consen 82 EPTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCAL-----PPEMRERYAQQLASLLKPGGRGLLIT 155 (218)
T ss_dssp EEECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS------GGGHHHHHHHHHHCEEEEEEEEEEE
T ss_pred CCCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccC-----CHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 11367899999999863333589999999999988 89999999999999999999954444
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.5e-17 Score=126.21 Aligned_cols=129 Identities=22% Similarity=0.412 Sum_probs=97.4
Q ss_pred ChhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 15 ~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
..+||.++|..... .+.+.+.+ ..+ ++.++||+|||.|+.+..|+++|+ .|+++|.|+.+++.+++....
T Consensus 5 ~~~y~~kky~~~~~-------hs~v~~a~-~~~-~~g~~LDlgcG~GRNalyLA~~G~-~VtAvD~s~~al~~l~~~a~~ 74 (192)
T PF03848_consen 5 PEDYFHKKYGLTPT-------HSEVLEAV-PLL-KPGKALDLGCGEGRNALYLASQGF-DVTAVDISPVALEKLQRLAEE 74 (192)
T ss_dssp STTHHHHHHTB-----------HHHHHHC-TTS--SSEEEEES-TTSHHHHHHHHTT--EEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCCCC-------cHHHHHHH-hhc-CCCcEEEcCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHhh
Confidence 35688888865433 22333322 223 456999999999999999999998 899999999999998887643
Q ss_pred CC-CCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 95 IP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 95 ~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.. .++..+.|+.+.. ++ +.||+|++..+++|+ +++.+.++++.+...++|||++++.++
T Consensus 75 ~~l~i~~~~~Dl~~~~-~~-~~yD~I~st~v~~fL-----~~~~~~~i~~~m~~~~~pGG~~li~~~ 134 (192)
T PF03848_consen 75 EGLDIRTRVADLNDFD-FP-EEYDFIVSTVVFMFL-----QRELRPQIIENMKAATKPGGYNLIVTF 134 (192)
T ss_dssp TT-TEEEEE-BGCCBS--T-TTEEEEEEESSGGGS------GGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cCceeEEEEecchhcc-cc-CCcCEEEEEEEeccC-----CHHHHHHHHHHHHhhcCCcEEEEEEEe
Confidence 22 5889999998876 44 679999999999999 889999999999999999999887553
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.71 E-value=1e-16 Score=126.83 Aligned_cols=104 Identities=17% Similarity=0.309 Sum_probs=87.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
++.+|||+|||+|.++..++++|. +|+++|+|+.|++.++++....+ ++.+.+.|+...+ + +++||+|+++.++||
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~-~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~I~~~~~~~~ 106 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGY-DVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAA-L-NEDYDFIFSTVVFMF 106 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhcc-c-cCCCCEEEEeccccc
Confidence 456999999999999999999875 89999999999999988764322 4677777776554 3 357999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+ +..+...++++++++|+|||++++.++
T Consensus 107 ~-----~~~~~~~~l~~~~~~LkpgG~lli~~~ 134 (195)
T TIGR00477 107 L-----QAGRVPEIIANMQAHTRPGGYNLIVAA 134 (195)
T ss_pred C-----CHHHHHHHHHHHHHHhCCCcEEEEEEe
Confidence 8 767889999999999999999766653
|
Part of a tellurite-reducing operon tehA and tehB |
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=130.19 Aligned_cols=110 Identities=23% Similarity=0.363 Sum_probs=93.8
Q ss_pred HHHHhhCC--CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeE
Q 025475 41 PFVRKYIP--TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 41 ~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
..+...++ +..+|||+|||+|.++..++..+. +++++|+|+.|++.++.+.. ...++++|+.+++ +++++||+
T Consensus 32 ~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~~D~s~~~l~~a~~~~~---~~~~~~~d~~~~~-~~~~~fD~ 106 (251)
T PRK10258 32 DALLAMLPQRKFTHVLDAGCGPGWMSRYWRERGS-QVTALDLSPPMLAQARQKDA---ADHYLAGDIESLP-LATATFDL 106 (251)
T ss_pred HHHHHhcCccCCCeEEEeeCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC---CCCEEEcCcccCc-CCCCcEEE
Confidence 33344443 356899999999999999988764 89999999999999998753 3578899999887 77889999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|+++.++++. .++..++.+++++|+|||.++++++..
T Consensus 107 V~s~~~l~~~-------~d~~~~l~~~~~~Lk~gG~l~~~~~~~ 143 (251)
T PRK10258 107 AWSNLAVQWC-------GNLSTALRELYRVVRPGGVVAFTTLVQ 143 (251)
T ss_pred EEECchhhhc-------CCHHHHHHHHHHHcCCCeEEEEEeCCC
Confidence 9999999998 788999999999999999999988654
|
|
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-16 Score=127.57 Aligned_cols=109 Identities=24% Similarity=0.402 Sum_probs=94.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+++.+|||+|||+|.++..+++. + ..+++++|+++.+++.++++.+. .++++++++|+.+.+ +++++||+|++..
T Consensus 44 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~ 122 (231)
T TIGR02752 44 QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELP-FDDNSFDYVTIGF 122 (231)
T ss_pred CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCC-CCCCCccEEEEec
Confidence 46779999999999999999876 3 45899999999999999988753 347899999998887 6778999999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+++++ ++..++++++.++|+|||.+++.+...+.
T Consensus 123 ~l~~~-------~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~ 156 (231)
T TIGR02752 123 GLRNV-------PDYMQVLREMYRVVKPGGKVVCLETSQPT 156 (231)
T ss_pred ccccC-------CCHHHHHHHHHHHcCcCeEEEEEECCCCC
Confidence 99998 78889999999999999999998866543
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-17 Score=130.43 Aligned_cols=101 Identities=30% Similarity=0.517 Sum_probs=87.2
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--------CCeEEEccccCCCCCCCCCeeEEEe
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP--------QLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~--------~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+++|||+|||+|.++..|++.|. .|+|+|+++.|++.|++.....| ++++.+.++++.. +.||+|+|
T Consensus 90 g~~ilDvGCGgGLLSepLArlga-~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~----~~fDaVvc 164 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGA-QVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT----GKFDAVVC 164 (282)
T ss_pred CceEEEeccCccccchhhHhhCC-eeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc----cccceeee
Confidence 36899999999999999999985 99999999999999999853332 2456666666654 34999999
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
..+++|+ .+++.+++.+.++|+|||.+++++.++
T Consensus 165 sevleHV-------~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 165 SEVLEHV-------KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHHHHHH-------hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 9999999 999999999999999999999998754
|
|
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.7e-17 Score=114.74 Aligned_cols=95 Identities=31% Similarity=0.661 Sum_probs=81.3
Q ss_pred EEEEcccCcHhHHHHHHcC----CCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCeeEEEec-cchh
Q 025475 53 VLMVGCGNALMSEDMVKDG----YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDK-GTLD 126 (252)
Q Consensus 53 vLD~G~G~G~~~~~l~~~~----~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~-~~l~ 126 (252)
|||+|||+|..+..+.+.. ..+++++|+|+.|++.++++.... .+++++++|+.+++ ...++||+|++. .+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~-~~~~~~D~v~~~~~~~~ 79 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLP-FSDGKFDLVVCSGLSLH 79 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHH-HHSSSEEEEEE-TTGGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCc-ccCCCeeEEEEcCCccC
Confidence 7999999999999999873 269999999999999999998542 38999999999987 677799999995 4599
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCc
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGG 153 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG 153 (252)
|+ +++...++++++.++|+|||
T Consensus 80 ~~-----~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 80 HL-----SPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GS-----SHHHHHHHHHHHHHTEEEEE
T ss_pred CC-----CHHHHHHHHHHHHHHhCCCC
Confidence 99 88999999999999999998
|
|
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-16 Score=127.47 Aligned_cols=168 Identities=17% Similarity=0.222 Sum_probs=119.9
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEE
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~---~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
..+++.+|||+|||+|..+..+++. ...+++|+|+|+.|++.|++++... .+++++++|+.+.+ ++ .+|+|
T Consensus 50 ~~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~--~~d~v 126 (239)
T TIGR00740 50 FVTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE-IK--NASMV 126 (239)
T ss_pred hCCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC-CC--CCCEE
Confidence 3467779999999999999999875 2458999999999999999987542 36899999998876 43 58999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh-hhhh-ccccccceeEEEEEecCCCCCCCC--CC
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA-RMIH-LKWKVYNWKIELYIIARPGFEKPG--GC 195 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~~ 195 (252)
++..++||+ +++++..++++++++|+|||.+++.+...+.. .... +......|. ...|++... ..
T Consensus 127 ~~~~~l~~~-----~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~~~~~~~~~~~~~~------~~~g~~~~~~~~~ 195 (239)
T TIGR00740 127 ILNFTLQFL-----PPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFK------RANGYSELEISQK 195 (239)
T ss_pred eeecchhhC-----CHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHhHHHHHHHHHHHHH------HHcCCCHHHHHHH
Confidence 999999999 77788999999999999999999998643321 1111 100000111 112221110 01
Q ss_pred CCCCcccCCCcccCCCCCCccccccCCCCceE
Q 025475 196 SSSMKSYLEPVPITDDGQLPAEFVLEDPDSHF 227 (252)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~ 227 (252)
...+.+...+.+..+...+++++||..+..+|
T Consensus 196 ~~~~~~~~~~~s~~~~~~~l~~aGF~~~~~~~ 227 (239)
T TIGR00740 196 RTALENVMRTDSIETHKARLKNVGFSHVELWF 227 (239)
T ss_pred HHHHhccCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 12334556677778888899999999877543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.8e-16 Score=127.02 Aligned_cols=109 Identities=21% Similarity=0.267 Sum_probs=89.2
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.+.+....+++.+|||+|||+|.++..+++....+++|+|+|++|++.|+... ..+++|+.+++ +++++||+|
T Consensus 42 ~~~l~~~~~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~------~~~~~d~~~lp-~~d~sfD~v 114 (226)
T PRK05785 42 VKTILKYCGRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD------DKVVGSFEALP-FRDKSFDVV 114 (226)
T ss_pred HHHHHHhcCCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc------ceEEechhhCC-CCCCCEEEE
Confidence 34444444557799999999999999998873248999999999999998752 45789999988 889999999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
++..+++|+ .++.+.+++++|+|||. +.+.++..|.
T Consensus 115 ~~~~~l~~~-------~d~~~~l~e~~RvLkp~--~~ile~~~p~ 150 (226)
T PRK05785 115 MSSFALHAS-------DNIEKVIAEFTRVSRKQ--VGFIAMGKPD 150 (226)
T ss_pred EecChhhcc-------CCHHHHHHHHHHHhcCc--eEEEEeCCCC
Confidence 999999999 88999999999999993 3345555543
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.3e-16 Score=130.08 Aligned_cols=100 Identities=20% Similarity=0.262 Sum_probs=87.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+++.. ..+++|+|+|+.|++.+++. +++++++|+.+++ +.++||+|+++.++|
T Consensus 28 ~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-----~~~~~~~d~~~~~--~~~~fD~v~~~~~l~ 100 (255)
T PRK14103 28 ERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-----GVDARTGDVRDWK--PKPDTDVVVSNAALQ 100 (255)
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-----CCcEEEcChhhCC--CCCCceEEEEehhhh
Confidence 356799999999999999998873 34899999999999999764 5789999998774 456899999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+ .++.+++++++++|+|||.+++..+.
T Consensus 101 ~~-------~d~~~~l~~~~~~LkpgG~l~~~~~~ 128 (255)
T PRK14103 101 WV-------PEHADLLVRWVDELAPGSWIAVQVPG 128 (255)
T ss_pred hC-------CCHHHHHHHHHHhCCCCcEEEEEcCC
Confidence 99 78899999999999999999987543
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-16 Score=120.48 Aligned_cols=104 Identities=31% Similarity=0.560 Sum_probs=86.3
Q ss_pred HHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 43 VRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 43 ~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+....+++.+|||+|||.|.++..+.+.+. +++++|+++.+++. .++.....+..... .++++||+|+++
T Consensus 16 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~~~g~D~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~fD~i~~~ 85 (161)
T PF13489_consen 16 LLPRLKPGKRVLDIGCGTGSFLRALAKRGF-EVTGVDISPQMIEK--------RNVVFDNFDAQDPP-FPDGSFDLIICN 85 (161)
T ss_dssp HHTCTTTTSEEEEESSTTSHHHHHHHHTTS-EEEEEESSHHHHHH--------TTSEEEEEECHTHH-CHSSSEEEEEEE
T ss_pred HhcccCCCCEEEEEcCCCCHHHHHHHHhCC-EEEEEECCHHHHhh--------hhhhhhhhhhhhhh-ccccchhhHhhH
Confidence 333356778999999999999999988877 99999999999988 12344444444444 567799999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.+++|+ .++..++++++++|+|||++++.++...
T Consensus 86 ~~l~~~-------~d~~~~l~~l~~~LkpgG~l~~~~~~~~ 119 (161)
T PF13489_consen 86 DVLEHL-------PDPEEFLKELSRLLKPGGYLVISDPNRD 119 (161)
T ss_dssp SSGGGS-------SHHHHHHHHHHHCEEEEEEEEEEEEBTT
T ss_pred HHHhhc-------ccHHHHHHHHHHhcCCCCEEEEEEcCCc
Confidence 999999 7899999999999999999999997754
|
... |
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.5e-16 Score=129.07 Aligned_cols=102 Identities=19% Similarity=0.359 Sum_probs=88.4
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
+.+|||+|||+|.++..+++.|. +|+++|+|+.+++.++++....+ ++++...|+.... . +++||+|++..+++|+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~-~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~-~-~~~fD~I~~~~vl~~l 197 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGF-DVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSAS-I-QEEYDFILSTVVLMFL 197 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEechhccc-c-cCCccEEEEcchhhhC
Confidence 45999999999999999999875 99999999999999998875422 6788888887765 3 6789999999999998
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++++...++++++++|+|||++++..
T Consensus 198 -----~~~~~~~~l~~~~~~LkpgG~~l~v~ 223 (287)
T PRK12335 198 -----NRERIPAIIKNMQEHTNPGGYNLIVC 223 (287)
T ss_pred -----CHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 77789999999999999999977654
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-16 Score=128.33 Aligned_cols=109 Identities=20% Similarity=0.379 Sum_probs=96.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CC-CCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IP-QLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+++|++|||||||.|.++..+++....+|+|+++|+++.+.+++++.. .. ++++...|..++. +.||.|++.+
T Consensus 70 L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~----e~fDrIvSvg 145 (283)
T COG2230 70 LKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFE----EPFDRIVSVG 145 (283)
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccc----cccceeeehh
Confidence 679999999999999999999999545999999999999999997743 33 7888888888875 2399999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
.++|+ ..+....+++.++++|+|||.+++.+...+.
T Consensus 146 mfEhv-----g~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 146 MFEHV-----GKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred hHHHh-----CcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 99999 7788999999999999999999998877655
|
|
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-16 Score=130.96 Aligned_cols=103 Identities=26% Similarity=0.333 Sum_probs=88.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh--c-CCCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY--E-EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~--~-~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.+.+|||+|||+|.++..++..|...|+|+|+|+.++..++... . ...++.++.+|+.+++ . .++||+|++..++
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp-~-~~~FD~V~s~~vl 199 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLP-A-LKAFDTVFSMGVL 199 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCC-C-cCCcCEEEECChh
Confidence 46799999999999999999988667999999999987654432 2 2347899999999987 5 7789999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+|. .++..++++++++|+|||.+++.+.
T Consensus 200 ~H~-------~dp~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 200 YHR-------RSPLDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred hcc-------CCHHHHHHHHHHhcCCCcEEEEEEE
Confidence 999 8889999999999999999988654
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.2e-16 Score=137.36 Aligned_cols=106 Identities=23% Similarity=0.332 Sum_probs=93.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|..+..+++....+++|+|+|+.+++.|+++.... .+++++++|+.+.+ +++++||+|++..+++
T Consensus 265 ~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~s~~~l~ 343 (475)
T PLN02336 265 KPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKT-YPDNSFDVIYSRDTIL 343 (475)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCC-CCCCCEEEEEECCccc
Confidence 466799999999999999888764448999999999999999887543 36899999998877 7778999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+ .++..++++++++|+|||.+++.++.
T Consensus 344 h~-------~d~~~~l~~~~r~LkpgG~l~i~~~~ 371 (475)
T PLN02336 344 HI-------QDKPALFRSFFKWLKPGGKVLISDYC 371 (475)
T ss_pred cc-------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 99 88899999999999999999998764
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.1e-16 Score=127.05 Aligned_cols=105 Identities=17% Similarity=0.260 Sum_probs=86.2
Q ss_pred CCCcEEEEcccCcH----hHHHHHHcC------CCcEEEEeCCHHHHHHHHHhhc------C------------------
Q 025475 49 TSSRVLMVGCGNAL----MSEDMVKDG------YEDIVNIDISSVAIDMMKMKYE------E------------------ 94 (252)
Q Consensus 49 ~~~~vLD~G~G~G~----~~~~l~~~~------~~~v~~vD~s~~~i~~a~~~~~------~------------------ 94 (252)
++.+|+|+|||+|. ++..+++.+ ..+|+|+|+|+.|++.|++..- .
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45699999999996 444454432 2489999999999999998531 0
Q ss_pred -----CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 95 -----IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 95 -----~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..++++.+.|+.+.+ .+.++||+|+|.++++|+ +++...+++++++++|+|||++++..
T Consensus 179 v~~~ir~~V~F~~~dl~~~~-~~~~~fD~I~crnvl~yf-----~~~~~~~~l~~l~~~L~pGG~L~lg~ 242 (264)
T smart00138 179 VKPELKERVRFAKHNLLAES-PPLGDFDLIFCRNVLIYF-----DEPTQRKLLNRFAEALKPGGYLFLGH 242 (264)
T ss_pred EChHHhCcCEEeeccCCCCC-CccCCCCEEEechhHHhC-----CHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 026899999999876 567899999999999999 77788899999999999999999865
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.1e-16 Score=128.93 Aligned_cols=104 Identities=20% Similarity=0.242 Sum_probs=87.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHH---hhcCCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKM---KYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~---~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..++..|...|+|+|+|+.|+..++. ......++.+..+++.+++ . ..+||+|++..+
T Consensus 120 ~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp-~-~~~FD~V~s~gv 197 (314)
T TIGR00452 120 LKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLH-E-LYAFDTVFSMGV 197 (314)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCC-C-CCCcCEEEEcch
Confidence 3567999999999999999988886689999999999876543 2223346788889988886 3 347999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
++|. .++..++++++++|+|||.+++.+.
T Consensus 198 L~H~-------~dp~~~L~el~r~LkpGG~Lvletl 226 (314)
T TIGR00452 198 LYHR-------KSPLEHLKQLKHQLVIKGELVLETL 226 (314)
T ss_pred hhcc-------CCHHHHHHHHHHhcCCCCEEEEEEE
Confidence 9999 8889999999999999999998764
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.1e-15 Score=122.92 Aligned_cols=104 Identities=29% Similarity=0.531 Sum_probs=92.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.+.+|||+|||+|.++..+++.+ ..+++++|+++.+++.++.+.. +++.++.+|+.+.+ +++++||+|+++.+++|
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~d~~~~~-~~~~~fD~vi~~~~l~~ 110 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS--ENVQFICGDAEKLP-LEDSSFDLIVSNLALQW 110 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC--CCCeEEecchhhCC-CCCCceeEEEEhhhhhh
Confidence 34689999999999999999886 4579999999999999998875 37889999999887 67789999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+ .++..++.+++++|+|||.+++.++..
T Consensus 111 ~-------~~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 111 C-------DDLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred c-------cCHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 9 788999999999999999999987654
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.3e-15 Score=125.78 Aligned_cols=100 Identities=20% Similarity=0.384 Sum_probs=87.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+++.. ..+++++|+|+.|++.++++. +++.++.+|+.++. +..+||+|+++.++|
T Consensus 30 ~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~---~~~~~~~~d~~~~~--~~~~fD~v~~~~~l~ 104 (258)
T PRK01683 30 ENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL---PDCQFVEADIASWQ--PPQALDLIFANASLQ 104 (258)
T ss_pred cCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC---CCCeEEECchhccC--CCCCccEEEEccChh
Confidence 456799999999999999998873 458999999999999999876 46889999998764 446899999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+ .+...++++++++|+|||.+++..
T Consensus 105 ~~-------~d~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 105 WL-------PDHLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred hC-------CCHHHHHHHHHHhcCCCcEEEEEC
Confidence 99 788899999999999999998864
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.4e-15 Score=116.14 Aligned_cols=114 Identities=23% Similarity=0.385 Sum_probs=91.9
Q ss_pred HhhCCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEE
Q 025475 44 RKYIPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 44 ~~~~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
...++++.+|||+|||+|..+..++.. ...+|+++|+++.+++.++++.+.. ++++++++|+.+.. . .++||+|+
T Consensus 40 ~~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~-~-~~~fDlV~ 117 (187)
T PRK00107 40 APYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFG-Q-EEKFDVVT 117 (187)
T ss_pred HhhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCC-C-CCCccEEE
Confidence 345666889999999999999988864 3569999999999999999987543 36999999999876 4 67899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
++. + .++..+++.++++|+|||.+++.............
T Consensus 118 ~~~----~-------~~~~~~l~~~~~~LkpGG~lv~~~~~~~~~~l~~~ 156 (187)
T PRK00107 118 SRA----V-------ASLSDLVELCLPLLKPGGRFLALKGRDPEEEIAEL 156 (187)
T ss_pred Ecc----c-------cCHHHHHHHHHHhcCCCeEEEEEeCCChHHHHHHH
Confidence 864 2 45678999999999999999998765544444433
|
|
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.1e-15 Score=129.44 Aligned_cols=107 Identities=23% Similarity=0.335 Sum_probs=91.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+++. +..+++++|+|+.|++.++++.. ..+++++.+|+.+.+ +++++||+|+++.+++
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~-~~~i~~i~gD~e~lp-~~~~sFDvVIs~~~L~ 189 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEP-LKECKIIEGDAEDLP-FPTDYADRYVSAGSIE 189 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhh-ccCCeEEeccHHhCC-CCCCceeEEEEcChhh
Confidence 35679999999999999888775 34589999999999999998764 247889999999887 7788999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+ .+...++++++++|+|||.+++.....+
T Consensus 190 ~~-------~d~~~~L~e~~rvLkPGG~LvIi~~~~p 219 (340)
T PLN02490 190 YW-------PDPQRGIKEAYRVLKIGGKACLIGPVHP 219 (340)
T ss_pred hC-------CCHHHHHHHHHHhcCCCcEEEEEEecCc
Confidence 98 6778899999999999999988764433
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-16 Score=119.37 Aligned_cols=105 Identities=25% Similarity=0.325 Sum_probs=92.8
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCe-EEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLK-YLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~-~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
.||++|||||..-...-......|+++|.++.|-+.+.+.++.. .++. ++.++.+++++++++++|+||+..+|...
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLCSv 158 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCTLVLCSV 158 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEEEEEecc
Confidence 68999999999888776554569999999999999998887542 3565 99999999988899999999999999988
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+++.+.|+++.|+|+|||++++.++...
T Consensus 159 -------e~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 159 -------EDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred -------CCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 9999999999999999999999997654
|
|
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-15 Score=126.22 Aligned_cols=108 Identities=23% Similarity=0.397 Sum_probs=86.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
++++.+|||+|||.|.++..+++. |. +|+|+.+|++..+.+++++...+ .+++..+|..+++ . +||.|++.
T Consensus 60 l~~G~~vLDiGcGwG~~~~~~a~~~g~-~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~-~---~fD~IvSi 134 (273)
T PF02353_consen 60 LKPGDRVLDIGCGWGGLAIYAAERYGC-HVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLP-G---KFDRIVSI 134 (273)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-------S-SEEEEE
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCc-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccC-C---CCCEEEEE
Confidence 678999999999999999999999 55 89999999999999999986533 6889999988876 2 89999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
.+++|+ +.++...+++++.++|+|||.+++..+..+.
T Consensus 135 ~~~Ehv-----g~~~~~~~f~~~~~~LkpgG~~~lq~i~~~~ 171 (273)
T PF02353_consen 135 EMFEHV-----GRKNYPAFFRKISRLLKPGGRLVLQTITHRD 171 (273)
T ss_dssp SEGGGT-----CGGGHHHHHHHHHHHSETTEEEEEEEEEE--
T ss_pred echhhc-----ChhHHHHHHHHHHHhcCCCcEEEEEeccccc
Confidence 999999 8889999999999999999999987765443
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.9e-15 Score=125.84 Aligned_cols=107 Identities=16% Similarity=0.329 Sum_probs=92.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
++++.+|||+|||+|..+..++.. + ..+++++|+++.+++.++++... .++++++.+|+.+++ +++++||+|+++
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~-~~~~~fD~Vi~~ 153 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALP-VADNSVDVIISN 153 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCC-CCCCceeEEEEc
Confidence 567889999999999988777665 3 34799999999999999998643 347889999998887 777899999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.+++|. .+...++++++++|+|||.+++.++.
T Consensus 154 ~v~~~~-------~d~~~~l~~~~r~LkpGG~l~i~~~~ 185 (272)
T PRK11873 154 CVINLS-------PDKERVFKEAFRVLKPGGRFAISDVV 185 (272)
T ss_pred CcccCC-------CCHHHHHHHHHHHcCCCcEEEEEEee
Confidence 999988 77889999999999999999998753
|
|
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.3e-15 Score=115.41 Aligned_cols=108 Identities=15% Similarity=0.255 Sum_probs=84.7
Q ss_pred CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.+|||+|||+|..+..++..+ ..+|+++|.++.+++.++++.+.. ++++++++|+.++. ..++||+|+++. ++
T Consensus 43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--~~~~fD~I~s~~-~~ 119 (181)
T TIGR00138 43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--HEEQFDVITSRA-LA 119 (181)
T ss_pred CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc--ccCCccEEEehh-hh
Confidence 6799999999999999988764 458999999999999998877532 46999999998874 456899999865 33
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
+...+++.++++|+|||.+++............+
T Consensus 120 ----------~~~~~~~~~~~~LkpgG~lvi~~~~~~~~~~~~~ 153 (181)
T TIGR00138 120 ----------SLNVLLELTLNLLKVGGYFLAYKGKKYLDEIEEA 153 (181)
T ss_pred ----------CHHHHHHHHHHhcCCCCEEEEEcCCCcHHHHHHH
Confidence 3456788889999999999987644444443333
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-15 Score=113.80 Aligned_cols=113 Identities=23% Similarity=0.301 Sum_probs=94.8
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC-CCCCCCCeeE
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-SFFEDESFDA 118 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~-~~~~~~~~D~ 118 (252)
.+.+...++++.+|||+|||.|.+...+.+....+.+|+|++++.+..|-++ .+.++++|+.+- ..+++++||.
T Consensus 4 ~~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r-----Gv~Viq~Dld~gL~~f~d~sFD~ 78 (193)
T PF07021_consen 4 LQIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR-----GVSVIQGDLDEGLADFPDQSFDY 78 (193)
T ss_pred HHHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc-----CCCEEECCHHHhHhhCCCCCccE
Confidence 3567788999999999999999999999987556899999999998888765 578999999763 4488999999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhh
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARM 167 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~ 167 (252)
|+++.+++++ ..+..+++++.|+ |...+++.++...++.
T Consensus 79 VIlsqtLQ~~-------~~P~~vL~EmlRV---gr~~IVsFPNFg~W~~ 117 (193)
T PF07021_consen 79 VILSQTLQAV-------RRPDEVLEEMLRV---GRRAIVSFPNFGHWRN 117 (193)
T ss_pred EehHhHHHhH-------hHHHHHHHHHHHh---cCeEEEEecChHHHHH
Confidence 9999999999 9999999998776 5577777766554433
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.4e-17 Score=113.99 Aligned_cols=95 Identities=29% Similarity=0.496 Sum_probs=63.7
Q ss_pred EEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCC-CCCCCeeEEEeccchhhhc
Q 025475 54 LMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSF-FEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 54 LD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~-~~~~~~D~v~~~~~l~~~~ 129 (252)
||+|||+|.++..+++. ...+++++|+|+.|++.+++++.... +......+..+... ...++||+|++..++||+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999988 35599999999999988888876543 23344444333321 123589999999999999
Q ss_pred CCCCChhhHHHHHHHHHHcccCCcEE
Q 025475 130 CGTNAPISASQMLGEVSRLLKPGGIY 155 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l 155 (252)
+++..++++++++|+|||.+
T Consensus 80 ------~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 ------EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ------S-HHHHHHHHTTT-TSS-EE
T ss_pred ------hhHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999986
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=8.4e-15 Score=131.56 Aligned_cols=113 Identities=25% Similarity=0.323 Sum_probs=91.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCC-CCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF-FEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~-~~~~~~D~v~~~~~l 125 (252)
++.+|||+|||+|..+..++... ..+++|+|+|+.|++.|+++.... .++.++++|+.+++. +++++||+|+++.++
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~vL 497 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSSIL 497 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEchHH
Confidence 56799999999999998888753 569999999999999999876432 367888999887652 567889999999999
Q ss_pred hhhcCCCC------ChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 126 DSLMCGTN------APISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 126 ~~~~~~~~------~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|++..-.+ +..+..+++++++++|||||.+++.+..
T Consensus 498 H~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~v 539 (677)
T PRK06922 498 HELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDGI 539 (677)
T ss_pred HhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 97621111 2467899999999999999999998743
|
|
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.5e-14 Score=117.76 Aligned_cols=106 Identities=28% Similarity=0.500 Sum_probs=92.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhc-CCCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYE-EIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~-~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++.. ...++++++.|+.+.+ +.+++||+|++..
T Consensus 17 ~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~ 95 (241)
T PRK08317 17 VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGLP-FPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccCC-CCCCCceEEEEec
Confidence 4567799999999999999998863 4589999999999999998842 2347899999998877 6778999999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++|+ .++..+++++.++|+|||.+++.++
T Consensus 96 ~~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~ 125 (241)
T PRK08317 96 VLQHL-------EDPARALAEIARVLRPGGRVVVLDT 125 (241)
T ss_pred hhhcc-------CCHHHHHHHHHHHhcCCcEEEEEec
Confidence 99999 7889999999999999999998774
|
|
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-14 Score=125.67 Aligned_cols=107 Identities=23% Similarity=0.433 Sum_probs=90.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++++.+|||+|||+|.++..+++....+|+++|+|+.+++.++++.... .+++...|..+. +++||+|++..+++
T Consensus 165 l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l-~v~~~~~D~~~l----~~~fD~Ivs~~~~e 239 (383)
T PRK11705 165 LKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL-PVEIRLQDYRDL----NGQFDRIVSVGMFE 239 (383)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC-eEEEEECchhhc----CCCCCEEEEeCchh
Confidence 4577899999999999999998864348999999999999999988543 477777777554 35799999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+ +..+...++++++++|+|||.+++.++..+
T Consensus 240 hv-----g~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 240 HV-----GPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred hC-----ChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 98 667788999999999999999999876543
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-15 Score=114.10 Aligned_cols=111 Identities=20% Similarity=0.348 Sum_probs=95.6
Q ss_pred hHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCe
Q 025475 39 LRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 39 l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
..+++.+- +.+..+|.|+|||+|..+..++++ ....++|+|-|++|++.|+.+. +++++..+|+.++. ++.++
T Consensus 19 a~dLla~Vp~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl---p~~~f~~aDl~~w~--p~~~~ 93 (257)
T COG4106 19 ARDLLARVPLERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL---PDATFEEADLRTWK--PEQPT 93 (257)
T ss_pred HHHHHhhCCccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC---CCCceecccHhhcC--CCCcc
Confidence 34444443 235569999999999999999998 3569999999999999998876 67899999999996 67789
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|++++|.+++++ ++-..++.++...|.|||.|.+....
T Consensus 94 dllfaNAvlqWl-------pdH~~ll~rL~~~L~Pgg~LAVQmPd 131 (257)
T COG4106 94 DLLFANAVLQWL-------PDHPELLPRLVSQLAPGGVLAVQMPD 131 (257)
T ss_pred chhhhhhhhhhc-------cccHHHHHHHHHhhCCCceEEEECCC
Confidence 999999999999 88889999999999999999997754
|
|
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-14 Score=115.69 Aligned_cols=108 Identities=30% Similarity=0.515 Sum_probs=94.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++.+|||+|||+|..+..+++.+. .+++++|+++.+++.++++.....+++++.+|+.+.+ +..++||+|+++..++
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~i~~~~~~~ 117 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALP-FEDNSFDAVTIAFGLR 117 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCC-CCCCcEEEEEEeeeeC
Confidence 577999999999999999988753 4899999999999999998763347899999999887 6677899999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+. .++..+++++.++|+|||.+++.+...+.
T Consensus 118 ~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 148 (223)
T TIGR01934 118 NV-------TDIQKALREMYRVLKPGGRLVILEFSKPA 148 (223)
T ss_pred Cc-------ccHHHHHHHHHHHcCCCcEEEEEEecCCC
Confidence 88 78899999999999999999998865443
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-14 Score=117.59 Aligned_cols=101 Identities=20% Similarity=0.336 Sum_probs=87.7
Q ss_pred cEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 52 RVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
+|||+|||+|..+..+++.. ..+++++|+|+.+++.+++++... ++++++..|+.+.+ .+ ++||+|++..+++|
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~-~~-~~fD~I~~~~~l~~ 79 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDP-FP-DTYDLVFGFEVIHH 79 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCC-CC-CCCCEeehHHHHHh
Confidence 69999999999999998874 458999999999999999987542 36899999987665 43 58999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+ .+...++++++++|+|||.+++.++.
T Consensus 80 ~-------~~~~~~l~~~~~~LkpgG~l~i~~~~ 106 (224)
T smart00828 80 I-------KDKMDLFSNISRHLKDGGHLVLADFI 106 (224)
T ss_pred C-------CCHHHHHHHHHHHcCCCCEEEEEEcc
Confidence 9 77899999999999999999998763
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=110.60 Aligned_cols=117 Identities=25% Similarity=0.415 Sum_probs=88.8
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCCCCCCC
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~~ 115 (252)
+.+.+... +..+|||+|||+|.++..++..+ ..+++++|+++.+++.+++++...+ +++++..|..+.. +.++
T Consensus 23 L~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~--~~~~ 98 (170)
T PF05175_consen 23 LLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL--PDGK 98 (170)
T ss_dssp HHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC--CTTC
T ss_pred HHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc--cccc
Confidence 33444443 56799999999999999999986 3379999999999999999986532 4889999987764 5789
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
||+|+++.+++.- .........++++.+.++|+|||.++++...
T Consensus 99 fD~Iv~NPP~~~~--~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~~ 142 (170)
T PF05175_consen 99 FDLIVSNPPFHAG--GDDGLDLLRDFIEQARRYLKPGGRLFLVINS 142 (170)
T ss_dssp EEEEEE---SBTT--SHCHHHHHHHHHHHHHHHEEEEEEEEEEEET
T ss_pred eeEEEEccchhcc--cccchhhHHHHHHHHHHhccCCCEEEEEeec
Confidence 9999999986643 1112235788999999999999999765543
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.2e-14 Score=128.48 Aligned_cols=106 Identities=18% Similarity=0.287 Sum_probs=90.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC--CCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD--MSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~--~~~~~~~~~D~v~~~~~l~ 126 (252)
++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++......++++++++|+.+ .+ +++++||+|+++.+++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~-~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~~-~~~~~fD~I~~~~~l~ 114 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKA-GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDLN-ISDGSVDLIFSNWLLM 114 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhC-CEEEEEeCCHHHHHHHHHHhccCCceEEEEecccccccC-CCCCCEEEEehhhhHH
Confidence 45699999999999999999885 48999999999999887654444578999999964 44 6678999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+ +++...+++++++++|+|||++++.+..
T Consensus 115 ~l-----~~~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 115 YL-----SDKEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred hC-----CHHHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 99 6666899999999999999999997743
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=116.21 Aligned_cols=108 Identities=26% Similarity=0.462 Sum_probs=94.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++.+|||+|||+|.++..++..+ ..+++++|+++.+++.+++++.. ..++.++.+|+.+.+ ...++||+|++..
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~I~~~~ 129 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALP-FPDNSFDAVTIAF 129 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCC-CCCCCccEEEEec
Confidence 56799999999999999998875 47999999999999999998754 246899999998876 6667899999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+++++ .+...++.++.++|++||.+++.++..+.
T Consensus 130 ~l~~~-------~~~~~~l~~~~~~L~~gG~li~~~~~~~~ 163 (239)
T PRK00216 130 GLRNV-------PDIDKALREMYRVLKPGGRLVILEFSKPT 163 (239)
T ss_pred ccccC-------CCHHHHHHHHHHhccCCcEEEEEEecCCC
Confidence 99998 78899999999999999999998865543
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.1e-14 Score=114.39 Aligned_cols=112 Identities=19% Similarity=0.267 Sum_probs=85.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
+.++.+|||+|||+|.++..++..+..+++++|+++.+++.+++++...+ ++.+++.|+.+. +..++||+|+++..+
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy 111 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARA--VEFRPFDVVVSNPPY 111 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhh--ccCCCeeEEEECCCC
Confidence 45677999999999999999988765599999999999999998875422 578888888764 356789999998764
Q ss_pred hhhc--------------CCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 126 DSLM--------------CGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 126 ~~~~--------------~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.... .+.........+++++.++|++||.+++...
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~ 160 (223)
T PRK14967 112 VPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQS 160 (223)
T ss_pred CCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 4220 0001112356788999999999999988653
|
|
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.3e-14 Score=112.84 Aligned_cols=150 Identities=21% Similarity=0.347 Sum_probs=110.3
Q ss_pred CChhhHHHHhccCCCce----eeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC---CCcEEEEeCCHHHHH
Q 025475 14 GDALYWNARYVQEGGSF----DWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG---YEDIVNIDISSVAID 86 (252)
Q Consensus 14 ~~~~~w~~~y~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~---~~~v~~vD~s~~~i~ 86 (252)
....|||..|......+ .|+.. ..-.++...-+...+||++|||.|.....+++-. .-.++++|.|+.+++
T Consensus 34 ~~~k~wD~fy~~~~~rFfkdR~wL~~--Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~ 111 (264)
T KOG2361|consen 34 EASKYWDTFYKIHENRFFKDRNWLLR--EFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIE 111 (264)
T ss_pred chhhhhhhhhhhccccccchhHHHHH--hhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHH
Confidence 45679999998877654 33221 1111111111122289999999999999988863 258999999999999
Q ss_pred HHHHhhcCCC-CCeEEEccccCCC---CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 87 MMKMKYEEIP-QLKYLQMDVRDMS---FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 87 ~a~~~~~~~~-~v~~~~~d~~~~~---~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
..+++..-.+ ++...+.|+.... ....+++|.|++.++|..+ +++.....+++++++|||||.|++.+++.
T Consensus 112 ~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi-----~pek~~~a~~nl~~llKPGG~llfrDYg~ 186 (264)
T KOG2361|consen 112 LVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAI-----HPEKMQSVIKNLRTLLKPGGSLLFRDYGR 186 (264)
T ss_pred HHHhccccchhhhcccceeccchhccCCCCcCccceEEEEEEEecc-----ChHHHHHHHHHHHHHhCCCcEEEEeeccc
Confidence 9999875433 4555555655422 1567899999999999998 88999999999999999999999999987
Q ss_pred hhhhhhhc
Q 025475 163 PKARMIHL 170 (252)
Q Consensus 163 ~~~~~~~~ 170 (252)
.+.....+
T Consensus 187 ~DlaqlRF 194 (264)
T KOG2361|consen 187 YDLAQLRF 194 (264)
T ss_pred chHHHHhc
Confidence 76544444
|
|
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=4.6e-14 Score=114.79 Aligned_cols=107 Identities=19% Similarity=0.305 Sum_probs=86.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~----~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
.++.+|||+|||+|.++..+++. | ..+++|+|+|+.|++.++++... +++++.+.+...++ ..+++||+|+++
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~-~~~~~~~~~~~~l~-~~~~~fD~V~~~ 136 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRR-PGVTFRQAVSDELV-AEGERFDVVTSN 136 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcccc-CCCeEEEEeccccc-ccCCCccEEEEC
Confidence 35569999999999998888753 3 34899999999999999988643 35777777776666 566789999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.++||+ ++++...++++++++++ |.+++.+...+
T Consensus 137 ~~lhh~-----~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 137 HFLHHL-----DDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CeeecC-----ChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 999999 55567889999999998 56667776655
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.5e-14 Score=117.14 Aligned_cols=104 Identities=28% Similarity=0.366 Sum_probs=84.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHH---hhcCCCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKM---KYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~---~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.+.+|||||||+|.++..++..|...|+|+|.++...-+.+. .+.....+...-..+++++ . .+.||+|++.++|
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp-~-~~~FDtVF~MGVL 192 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLP-N-LGAFDTVFSMGVL 192 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhcc-c-cCCcCEEEEeeeh
Confidence 567999999999999999999998899999999887665433 2222223334435677777 3 6789999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|. .++-..|+++++.|++||.+++-+..
T Consensus 193 YHr-------r~Pl~~L~~Lk~~L~~gGeLvLETlv 221 (315)
T PF08003_consen 193 YHR-------RSPLDHLKQLKDSLRPGGELVLETLV 221 (315)
T ss_pred hcc-------CCHHHHHHHHHHhhCCCCEEEEEEee
Confidence 999 99999999999999999999987643
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=101.05 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=81.5
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++.. ..+++++|+++.+++.++++.+. .++++++..|+.+.......+||+|++...
T Consensus 18 ~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 18 RPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChhhcCCCCEEEECCc
Confidence 456799999999999999999873 46899999999999999988754 346888888876532123358999998654
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+ ...++++.+++.|+|||.+++..
T Consensus 98 ~~----------~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 98 GG----------LLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred ch----------hHHHHHHHHHHHcCCCCEEEEEe
Confidence 33 34688999999999999998865
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.8e-14 Score=108.95 Aligned_cols=110 Identities=21% Similarity=0.259 Sum_probs=86.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
++.+|||+|||+|.++..++..+. +++++|+++.+++.+++++... .+++++++|..+.. .++||+|+++.++++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~---~~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK-CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGV---RGKFDVILFNPPYLP 94 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHHcCCceEEEEccccccc---CCcccEEEECCCCCC
Confidence 456899999999999999999876 8999999999999999987532 26788888887653 348999999998876
Q ss_pred hcCCC--------------CChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 128 LMCGT--------------NAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 128 ~~~~~--------------~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
..... .+......+++++.++|+|||.+++.....
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~ 143 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL 143 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc
Confidence 51100 001125678999999999999998887554
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-14 Score=111.51 Aligned_cols=141 Identities=16% Similarity=0.253 Sum_probs=99.2
Q ss_pred ChhhHHHHhccCCCceeeeccchhh-----HHHHHhhCC-------CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCH
Q 025475 15 DALYWNARYVQEGGSFDWYQRYSAL-----RPFVRKYIP-------TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISS 82 (252)
Q Consensus 15 ~~~~w~~~y~~~~~~~~~~~~~~~l-----~~~~~~~~~-------~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~ 82 (252)
..+||++.-.+..++..-+...+.+ ..+|.+... ...+.||.|||.|+.+..++..-+.+|-.||.++
T Consensus 9 a~~YW~~v~atvdGMLGG~~~is~~Di~gS~~FL~~l~~~~~~~~~~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~ 88 (218)
T PF05891_consen 9 AKEYWENVPATVDGMLGGFGHISRIDIQGSRNFLKKLKRGRKPGKPKFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVE 88 (218)
T ss_dssp HHHHHHTS-SSHHHHTTT-GGGHHHHHHHHHHHHHCCCT---------SEEEEET-TTTHHHHHTCCCC-SEEEEEES-H
T ss_pred HHHHHcCCCCCccccccCCCCCChHHHHHHHHHHHHHHhhcccCCCCcceEEecccccchhHHHHHHHhcCEeEEeccCH
Confidence 3578987666555544444433221 334444322 2349999999999999988776677999999999
Q ss_pred HHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 83 VAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 83 ~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..++.|++.+.. ....++.+..+.++. ....+||+|++.+++.|+ .+++..++|++|...|+|+|.+++-+.
T Consensus 89 ~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~-P~~~~YDlIW~QW~lghL-----TD~dlv~fL~RCk~~L~~~G~IvvKEN 162 (218)
T PF05891_consen 89 KFLEQAKEYLGKDNPRVGEFYCVGLQDFT-PEEGKYDLIWIQWCLGHL-----TDEDLVAFLKRCKQALKPNGVIVVKEN 162 (218)
T ss_dssp HHHHHHHHHTCCGGCCEEEEEES-GGG-----TT-EEEEEEES-GGGS------HHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred HHHHHHHHHhcccCCCcceEEecCHhhcc-CCCCcEeEEEehHhhccC-----CHHHHHHHHHHHHHhCcCCcEEEEEec
Confidence 999999988754 223678888888886 445789999999999999 999999999999999999999999875
Q ss_pred C
Q 025475 161 G 161 (252)
Q Consensus 161 ~ 161 (252)
.
T Consensus 163 ~ 163 (218)
T PF05891_consen 163 V 163 (218)
T ss_dssp E
T ss_pred C
Confidence 3
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=9.9e-14 Score=119.74 Aligned_cols=163 Identities=41% Similarity=0.777 Sum_probs=138.3
Q ss_pred CCCCCCCCChhhHHHHhccCC-CceeeeccchhhHHHHHhhCCCCC-cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHH
Q 025475 7 SCNTYNYGDALYWNARYVQEG-GSFDWYQRYSALRPFVRKYIPTSS-RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVA 84 (252)
Q Consensus 7 ~~~~~~~~~~~~w~~~y~~~~-~~~~~~~~~~~l~~~~~~~~~~~~-~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~ 84 (252)
+.....+++..||+.+|..++ ..++||..+..+...|...+.+.. +++.+|||.-.+...+.+.|+..++.+|+|+-.
T Consensus 4 p~~~~~~~s~~~wd~rf~~rg~~~~ewY~~~l~l~~~i~~~~~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~ 83 (482)
T KOG2352|consen 4 PQEQLSFGSVVYWDKRFQPRGSDPFEWYGALLSLSGSIMKYLSPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVV 83 (482)
T ss_pred cccccccCcchhhhhhccccCCChHHHHHHHHHHHHHHHHhhchhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHH
Confidence 455668999999999999885 778999998888888888877776 999999999999999999998899999999999
Q ss_pred HHHHHHhh-cCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChh---hHHHHHHHHHHcccCCcEEEEEEc
Q 025475 85 IDMMKMKY-EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPI---SASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 85 i~~a~~~~-~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~---~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
++.+.... ...+...+...|+..+. +++++||+|+..++++++++.....- .....+.++.|+|++||+++.++.
T Consensus 84 V~~m~~~~~~~~~~~~~~~~d~~~l~-fedESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 84 VAAMQVRNAKERPEMQMVEMDMDQLV-FEDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred HHHHHhccccCCcceEEEEecchhcc-CCCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 99988876 44457899999999998 99999999999999999987765555 677889999999999999888886
Q ss_pred C--Chhhhhhhc
Q 025475 161 G--DPKARMIHL 170 (252)
Q Consensus 161 ~--~~~~~~~~~ 170 (252)
. .|..+...+
T Consensus 163 ~~~vp~~r~~e~ 174 (482)
T KOG2352|consen 163 VQVVPQGRKPEW 174 (482)
T ss_pred eeeccCCCCeee
Confidence 4 444433333
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.6e-14 Score=102.92 Aligned_cols=111 Identities=24% Similarity=0.412 Sum_probs=86.5
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-CCCCCCeeEEEeccch
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 125 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-~~~~~~~D~v~~~~~l 125 (252)
|.+|||+|||+|.++..+++.+..+++++|+++.+++.++.++... .+++++++|+.+.. ...+++||+|+++..+
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~ 80 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPY 80 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--ST
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCC
Confidence 3589999999999999999997569999999999999999998643 36899999998764 3567899999999987
Q ss_pred hhhc-CCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 126 DSLM-CGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 126 ~~~~-~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.... ...........+++++.++|+|||.+++..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~~ 116 (117)
T PF13659_consen 81 GPRSGDKAALRRLYSRFLEAAARLLKPGGVLVFITP 116 (117)
T ss_dssp TSBTT----GGCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 6431 1111223557889999999999999988763
|
... |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.7e-13 Score=117.78 Aligned_cols=117 Identities=18% Similarity=0.302 Sum_probs=90.5
Q ss_pred HHHHHhhCCC--CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEccccCCCCC
Q 025475 40 RPFVRKYIPT--SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFF 111 (252)
Q Consensus 40 ~~~~~~~~~~--~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~~~~~~ 111 (252)
.+++...++. ..+|||+|||+|.++..+++.+ ..+++++|+|+.+++.++++++.. .++++...|..+. .
T Consensus 217 trllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~--~ 294 (378)
T PRK15001 217 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--V 294 (378)
T ss_pred HHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc--C
Confidence 4556666653 3589999999999999999874 559999999999999999987432 2567888887553 3
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
...+||+|+++.++|... ..+.....++++.++++|+|||.++++..
T Consensus 295 ~~~~fDlIlsNPPfh~~~--~~~~~ia~~l~~~a~~~LkpGG~L~iV~n 341 (378)
T PRK15001 295 EPFRFNAVLCNPPFHQQH--ALTDNVAWEMFHHARRCLKINGELYIVAN 341 (378)
T ss_pred CCCCEEEEEECcCcccCc--cCCHHHHHHHHHHHHHhcccCCEEEEEEe
Confidence 445899999999887531 01334567899999999999999998863
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-13 Score=110.19 Aligned_cols=100 Identities=24% Similarity=0.386 Sum_probs=84.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..++..+. +++|+|+|+.|+..|+++.... .++.+.++|+.+.+ ++||+|++..+
T Consensus 54 ~~~~~vLDiGcG~G~~~~~la~~~~-~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~fD~ii~~~~ 128 (219)
T TIGR02021 54 LKGKRVLDAGCGTGLLSIELAKRGA-IVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC----GEFDIVVCMDV 128 (219)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC----CCcCEEEEhhH
Confidence 3567999999999999999998854 8999999999999999987532 26889999987764 68999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
++|+ +.++...+++++.+++++++++.+
T Consensus 129 l~~~-----~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 129 LIHY-----PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred HHhC-----CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9988 667788999999999887655554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=114.40 Aligned_cols=108 Identities=22% Similarity=0.345 Sum_probs=83.8
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCee
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D 117 (252)
+.+.....++.+|||+|||+|.++..++..|..+++++|+++.+++.++++..... .+.....+... ...++||
T Consensus 151 ~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~---~~~~~fD 227 (288)
T TIGR00406 151 EWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ---PIEGKAD 227 (288)
T ss_pred HHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc---ccCCCce
Confidence 34445556778999999999999999988887799999999999999999875422 34455554222 3456899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|+++...+ ....++.++.++|+|||+++++.+.
T Consensus 228 lVvan~~~~----------~l~~ll~~~~~~LkpgG~li~sgi~ 261 (288)
T TIGR00406 228 VIVANILAE----------VIKELYPQFSRLVKPGGWLILSGIL 261 (288)
T ss_pred EEEEecCHH----------HHHHHHHHHHHHcCCCcEEEEEeCc
Confidence 999976533 3467899999999999999998764
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=106.74 Aligned_cols=101 Identities=16% Similarity=0.224 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.++++.... .+++++++|... . + .++||+|++..
T Consensus 29 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~-~-~-~~~~D~v~~~~ 105 (187)
T PRK08287 29 LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPI-E-L-PGKADAIFIGG 105 (187)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchh-h-c-CcCCCEEEECC
Confidence 3567799999999999999998874 458999999999999999887532 468888888743 2 2 35799999876
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..+++ ..+++.+.+.|+|||.+++...
T Consensus 106 ~~~~~----------~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 106 SGGNL----------TAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred CccCH----------HHHHHHHHHhcCCCeEEEEEEe
Confidence 54433 5678899999999999988654
|
|
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.8e-13 Score=108.18 Aligned_cols=111 Identities=20% Similarity=0.351 Sum_probs=89.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCC-CCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF-FEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~-~~~~~~D~v~~~~ 123 (252)
...+|||+|||+|..+..++.+ ...++++||+.+.+.+.|+++.+.. .++++++.|+.++.. ....+||+|+||.
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NP 123 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNP 123 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCC
Confidence 4569999999999999999998 4579999999999999999998653 389999999998753 3345799999999
Q ss_pred chhhhcCC-CCCh----------hhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 TLDSLMCG-TNAP----------ISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~-~~~~----------~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+++-..-. .+++ -+..++++.+..+||+||.+.++.
T Consensus 124 Pyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~ 170 (248)
T COG4123 124 PYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVH 170 (248)
T ss_pred CCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEe
Confidence 87654211 0111 124788899999999999999877
|
|
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.51 E-value=9.1e-14 Score=110.56 Aligned_cols=113 Identities=21% Similarity=0.210 Sum_probs=85.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccc-cCCCC-CCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDV-RDMSF-FEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~-~~~~~-~~~~~~D~v~~~~ 123 (252)
++.+|||+|||+|..+..++... ..+++++|+|+.+++.+++++.. .++++++++|+ ..++. +++++||+|+++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~~ 119 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLNF 119 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEEC
Confidence 56799999999999999998763 45899999999999999988743 34789999998 55431 4567899999875
Q ss_pred chhhhcC-CCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMC-GTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+..+... ..........++++++++|+|||.+++.+..
T Consensus 120 ~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~~ 158 (202)
T PRK00121 120 PDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATDW 158 (202)
T ss_pred CCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcCC
Confidence 4322100 0001112578899999999999999997744
|
|
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=113.56 Aligned_cols=110 Identities=22% Similarity=0.358 Sum_probs=86.9
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCe----EEEccccCCCCCCCCC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLK----YLQMDVRDMSFFEDES 115 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~----~~~~d~~~~~~~~~~~ 115 (252)
.+.+.+...++.+|||+|||+|.++...++.|..+++|+|++|.+++.++.+...++ +. ....+.... ...++
T Consensus 153 L~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~-v~~~~~~~~~~~~~~--~~~~~ 229 (300)
T COG2264 153 LEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNG-VELLVQAKGFLLLEV--PENGP 229 (300)
T ss_pred HHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcC-Cchhhhcccccchhh--cccCc
Confidence 567777888999999999999999999999998899999999999999999986532 22 222222222 23368
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
||+|++|-..+ -...+...+.++|+|||+++++..-.
T Consensus 230 ~DvIVANILA~----------vl~~La~~~~~~lkpgg~lIlSGIl~ 266 (300)
T COG2264 230 FDVIVANILAE----------VLVELAPDIKRLLKPGGRLILSGILE 266 (300)
T ss_pred ccEEEehhhHH----------HHHHHHHHHHHHcCCCceEEEEeehH
Confidence 99999986322 34688999999999999999988643
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-13 Score=112.61 Aligned_cols=104 Identities=18% Similarity=0.297 Sum_probs=85.9
Q ss_pred CCCcEEEEcccCcHhHHHHHH--c-CCCcEEEEeCCHHHHHHHHHhhcC----CCCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 49 TSSRVLMVGCGNALMSEDMVK--D-GYEDIVNIDISSVAIDMMKMKYEE----IPQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~--~-~~~~v~~vD~s~~~i~~a~~~~~~----~~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
++.+|+|+|||.|.++..++. . ..++++++|+++++++.|++.+.. .++++|.++|+.+.. ...+.||+|++
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~-~~l~~FDlVF~ 201 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVT-ESLKEYDVVFL 201 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcc-cccCCcCEEEE
Confidence 567999999998855444333 3 255899999999999999999843 236999999998864 23467999999
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. +++++ +.+++.++++.+.+.|+|||.+++..
T Consensus 202 ~-ALi~~-----dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 202 A-ALVGM-----DKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred e-ccccc-----ccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9 88888 66899999999999999999999876
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.7e-13 Score=112.04 Aligned_cols=104 Identities=27% Similarity=0.509 Sum_probs=82.2
Q ss_pred HHHHhhCC-CCCcEEEEcccCcHhHHHHHHcC----CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCC
Q 025475 41 PFVRKYIP-TSSRVLMVGCGNALMSEDMVKDG----YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 41 ~~~~~~~~-~~~~vLD~G~G~G~~~~~l~~~~----~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~ 115 (252)
..+...++ +..+|||+|||+|.++..++... ...++|+|+|+.+++.|+++. +++.+.++|+.+++ +++++
T Consensus 76 ~~l~~~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~---~~~~~~~~d~~~lp-~~~~s 151 (272)
T PRK11088 76 NLLAERLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY---PQVTFCVASSHRLP-FADQS 151 (272)
T ss_pred HHHHHhcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC---CCCeEEEeecccCC-CcCCc
Confidence 34444443 34589999999999999988752 237999999999999998764 56899999999988 88889
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
||+|++... ...+++++|+|+|||+++++.+..
T Consensus 152 fD~I~~~~~--------------~~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 152 LDAIIRIYA--------------PCKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred eeEEEEecC--------------CCCHHHHHhhccCCCEEEEEeCCC
Confidence 999997532 113578999999999999987543
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=6.3e-15 Score=112.90 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=96.3
Q ss_pred EEEeCCHHHHHHHHHhhcC-----CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHccc
Q 025475 76 VNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLK 150 (252)
Q Consensus 76 ~~vD~s~~~i~~a~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~ 150 (252)
+|+|+|+.|++.|+++... ..+++++++|+.+++ +++++||+|++..+++++ .++.+++++++|+||
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp-~~~~~fD~v~~~~~l~~~-------~d~~~~l~ei~rvLk 72 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLP-FDDCEFDAVTMGYGLRNV-------VDRLRAMKEMYRVLK 72 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCC-CCCCCeeEEEecchhhcC-------CCHHHHHHHHHHHcC
Confidence 4899999999999876532 236899999999998 888899999999999999 899999999999999
Q ss_pred CCcEEEEEEcCChhhhhhhccccccceeEEEEEecCCCCCCCCCCCCCC----cccCCCcccCCCCCCccccccCCCCce
Q 025475 151 PGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFEKPGGCSSSM----KSYLEPVPITDDGQLPAEFVLEDPDSH 226 (252)
Q Consensus 151 ~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~gf~~~~~~ 226 (252)
|||.+++.++..+....... ...|..... .+..+.- ... .... .+.....+..+...+++++||.++...
T Consensus 73 pGG~l~i~d~~~~~~~~~~~---~~~~~~~~~-~~~~~~~-~~~-~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 73 PGSRVSILDFNKSNQSVTTF---MQGWMIDNV-VVPVATV-YDL-AKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred cCeEEEEEECCCCChHHHHH---HHHHHccch-HhhhhHH-hCC-hHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 99999999988665422222 222332111 1111211 111 1111 122344455556668999999988754
Q ss_pred EE
Q 025475 227 FI 228 (252)
Q Consensus 227 ~~ 228 (252)
++
T Consensus 147 ~~ 148 (160)
T PLN02232 147 EI 148 (160)
T ss_pred EC
Confidence 43
|
|
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.4e-13 Score=114.13 Aligned_cols=105 Identities=20% Similarity=0.227 Sum_probs=88.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++..+|||+|||+|.++..++++. ..+++++|. +.+++.+++++... ++++++.+|+.+.+ ++ .+|+|++..
T Consensus 148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~-~~--~~D~v~~~~ 223 (306)
T TIGR02716 148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-YP--EADAVLFCR 223 (306)
T ss_pred CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC-CC--CCCEEEeEh
Confidence 466799999999999999999884 458999998 78999998887542 36899999998754 44 369999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++|++ +++...++++++++.|+|||++++.++.
T Consensus 224 ~lh~~-----~~~~~~~il~~~~~~L~pgG~l~i~d~~ 256 (306)
T TIGR02716 224 ILYSA-----NEQLSTIMCKKAFDAMRSGGRLLILDMV 256 (306)
T ss_pred hhhcC-----ChHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 99988 6677789999999999999999999864
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-13 Score=108.74 Aligned_cols=106 Identities=31% Similarity=0.509 Sum_probs=89.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+ ++++.+.|+.+.+....++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGA-NVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 366999999999999999888765 79999999999999998875432 588888888876522247899999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|+ .++..+++++.++|++||.+++.....
T Consensus 124 ~~-------~~~~~~l~~~~~~L~~gG~l~i~~~~~ 152 (224)
T TIGR01983 124 HV-------PDPQAFIRACAQLLKPGGILFFSTINR 152 (224)
T ss_pred hC-------CCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 99 788999999999999999999887653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.5e-13 Score=116.18 Aligned_cols=121 Identities=14% Similarity=0.177 Sum_probs=88.8
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCe
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~ 116 (252)
+.+.+...++++.+|||+|||+|.++..++.. ...+++++|+|+.+++.++++.+..+ +++++++|+.+......++|
T Consensus 241 LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e~~l~~~~~F 320 (423)
T PRK14966 241 LVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFDTDMPSEGKW 320 (423)
T ss_pred HHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhccccccCCCc
Confidence 34444444566679999999999999998875 35589999999999999999986433 68999999876431124579
Q ss_pred eEEEeccchhhh------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSL------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+|+++.++... .-+....+....+++.+.+.|+|||.+++-.
T Consensus 321 DLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi 381 (423)
T PRK14966 321 DIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH 381 (423)
T ss_pred cEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999875311 0112233345688888899999999987533
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-13 Score=106.75 Aligned_cols=98 Identities=26% Similarity=0.362 Sum_probs=79.9
Q ss_pred HHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-CCCCCCCCeeEEE
Q 025475 42 FVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVI 120 (252)
Q Consensus 42 ~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~~D~v~ 120 (252)
.+...++++.+|||+|||+|.++..+++.....++++|+++.+++.++.. +++++++|+.+ .+.+++++||+|+
T Consensus 6 ~i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~-----~~~~~~~d~~~~l~~~~~~sfD~Vi 80 (194)
T TIGR02081 6 SILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR-----GVNVIQGDLDEGLEAFPDKSFDYVI 80 (194)
T ss_pred HHHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc-----CCeEEEEEhhhcccccCCCCcCEEE
Confidence 34455667789999999999999988876545789999999999988753 47888999876 3225677899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccC
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKP 151 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~ 151 (252)
++.+++|+ .++..+++++.+++++
T Consensus 81 ~~~~l~~~-------~d~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 81 LSQTLQAT-------RNPEEILDEMLRVGRH 104 (194)
T ss_pred EhhHhHcC-------cCHHHHHHHHHHhCCe
Confidence 99999999 8889999999887653
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.5e-13 Score=109.65 Aligned_cols=106 Identities=27% Similarity=0.477 Sum_probs=89.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++... ..+.++..++.+.+....++||+|++..+++|
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~~l~~ 126 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARLGA-DVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCMEMLEH 126 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCC-eEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhhHhhc
Confidence 567999999999999999988764 8999999999999999886432 25677888877664234578999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
. .+...+++.+.++|+|||.+++..+..
T Consensus 127 ~-------~~~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 127 V-------PDPASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred c-------CCHHHHHHHHHHHcCCCcEEEEEecCC
Confidence 8 788899999999999999999887653
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-12 Score=111.89 Aligned_cols=107 Identities=18% Similarity=0.285 Sum_probs=85.5
Q ss_pred CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
..+|||+|||+|.++..+++.+ ..+++++|+|+.+++.++++++..+ ..+++..|+... ..++||+|+++.++|+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~---~~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSD---IKGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccc---cCCCccEEEECCCccC
Confidence 3489999999999999999874 4589999999999999999885533 456777776543 2468999999999886
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.. ..+......+++++.+.|+|||.++++...
T Consensus 274 g~--~~~~~~~~~~i~~a~~~LkpgG~L~iVan~ 305 (342)
T PRK09489 274 GI--QTSLDAAQTLIRGAVRHLNSGGELRIVANA 305 (342)
T ss_pred Cc--cccHHHHHHHHHHHHHhcCcCCEEEEEEeC
Confidence 20 113356789999999999999999988754
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=2.1e-13 Score=107.80 Aligned_cols=112 Identities=22% Similarity=0.290 Sum_probs=84.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC--CCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF--FEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~ 123 (252)
...+|||+|||+|.++..++... ...++|+|+++.+++.|+++... ..+++++++|+.+++. ++++++|.|+++.
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 34589999999999999999874 55899999999999999887643 3489999999976531 3456899999876
Q ss_pred chhhhcCCCC---ChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 124 TLDSLMCGTN---APISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 124 ~l~~~~~~~~---~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+-.+. ... ..-....+++++.++|+|||.+++.+...
T Consensus 96 pdpw~--k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~td~~ 135 (194)
T TIGR00091 96 PDPWP--KKRHNKRRITQPHFLKEYANVLKKGGVIHFKTDNE 135 (194)
T ss_pred CCcCC--CCCccccccCCHHHHHHHHHHhCCCCEEEEEeCCH
Confidence 53322 000 00012578999999999999999887544
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.5e-13 Score=112.44 Aligned_cols=114 Identities=18% Similarity=0.212 Sum_probs=87.7
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC-CC--CCeEEEccccCCCCCCCC-
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE-IP--QLKYLQMDVRDMSFFEDE- 114 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~-~~--~v~~~~~d~~~~~~~~~~- 114 (252)
..+...++++.+|||+|||+|..+..+++.. ..+++++|+|++|++.+++++.. .+ ++..+++|+.+.......
T Consensus 55 ~~ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~ 134 (301)
T TIGR03438 55 DEIAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEP 134 (301)
T ss_pred HHHHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhccc
Confidence 3345556677899999999999999998874 35899999999999999888743 33 356789999874212222
Q ss_pred ---CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 115 ---SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ---~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...++++..+++++ ++++...++++++++|+|||.+++..
T Consensus 135 ~~~~~~~~~~gs~~~~~-----~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 135 AAGRRLGFFPGSTIGNF-----TPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred ccCCeEEEEecccccCC-----CHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 33455555678888 77889999999999999999998754
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=8.7e-13 Score=105.19 Aligned_cols=98 Identities=16% Similarity=0.222 Sum_probs=79.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
.++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... ++++++.+|..+.. ....+||+|++.
T Consensus 71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Ii~~ 149 (205)
T PRK13944 71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL-EKHAPFDAIIVT 149 (205)
T ss_pred CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC-ccCCCccEEEEc
Confidence 466799999999999998888762 358999999999999999887543 25889999998754 345689999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+++++ . +++.+.|+|||++++..
T Consensus 150 ~~~~~~-------~------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 150 AAASTI-------P------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred cCcchh-------h------HHHHHhcCcCcEEEEEE
Confidence 887776 2 36789999999998754
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.3e-12 Score=105.32 Aligned_cols=103 Identities=17% Similarity=0.198 Sum_probs=79.2
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||+|.++..+++.. ..+|+++|+++.|++.+.++.....++.++.+|+.+... ...++||+|++..
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~d~ 149 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQDV 149 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEECC
Confidence 4578899999999999999998873 358999999999999887776555689999999875310 1135699999542
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
. .+.....++++++++|||||.++++
T Consensus 150 ~---------~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 150 A---------QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred C---------ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 1 1123355689999999999999994
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.4e-13 Score=108.84 Aligned_cols=109 Identities=22% Similarity=0.357 Sum_probs=83.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.+.+|||+|||+|.++..++... ..+++++|+++.+++.++.+... ..+++++++|+.+. ++.++||+|+++.++
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~--~~~~~fD~Vi~npPy 164 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEP--LPGGKFDLIVSNPPY 164 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhcc--CcCCceeEEEECCCC
Confidence 34589999999999999999873 45899999999999999998753 23689999998774 456789999998765
Q ss_pred hhhc-------------------CCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 126 DSLM-------------------CGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 126 ~~~~-------------------~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.... .+.........+++.+.++|++||.+++..
T Consensus 165 ~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 165 IPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred CchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4210 000011223578899999999999998754
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.9e-13 Score=106.71 Aligned_cols=97 Identities=24% Similarity=0.304 Sum_probs=79.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++++... .++.+..+|+. ..+++||+|++..+
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~~-~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~----~~~~~fD~v~~~~~ 136 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRGA-KVVASDISPQMVEEARERAPEAGLAGNITFEVGDLE----SLLGRFDTVVCLDV 136 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCch----hccCCcCEEEEcch
Confidence 4567999999999999999998865 7999999999999999987542 36888888842 23468999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGI 154 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 154 (252)
++|+ +.+....+++++.++++.++.
T Consensus 137 l~~~-----~~~~~~~~l~~l~~~~~~~~~ 161 (230)
T PRK07580 137 LIHY-----PQEDAARMLAHLASLTRGSLI 161 (230)
T ss_pred hhcC-----CHHHHHHHHHHHHhhcCCeEE
Confidence 9988 667788899999987754443
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.46 E-value=8.7e-13 Score=108.39 Aligned_cols=106 Identities=22% Similarity=0.308 Sum_probs=78.6
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
..+.....++.+|||+|||+|.++..++..|..+++++|+++.+++.+++++...+ +. +..... ..+.+||+|+
T Consensus 111 ~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~-~~----~~~~~~-~~~~~fD~Vv 184 (250)
T PRK00517 111 EALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNG-VE----LNVYLP-QGDLKADVIV 184 (250)
T ss_pred HHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcC-CC----ceEEEc-cCCCCcCEEE
Confidence 34444556788999999999999998888876579999999999999999875432 21 101111 1122799999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
++... .....+++++.++|+|||.++++.+..
T Consensus 185 ani~~----------~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 185 ANILA----------NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred EcCcH----------HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 87543 334678999999999999999987553
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.2e-13 Score=111.09 Aligned_cols=110 Identities=26% Similarity=0.409 Sum_probs=84.4
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeE
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
.+++.+...++.+|||+|||+|.++...++.|..+|+++|++|.+++.|+++...++ ..++......+ ...++||+
T Consensus 152 l~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~~~~~---~~~~~~dl 228 (295)
T PF06325_consen 152 LELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVSLSED---LVEGKFDL 228 (295)
T ss_dssp HHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEESCTSC---TCCS-EEE
T ss_pred HHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEEEecc---cccccCCE
Confidence 566777778889999999999999999999998899999999999999999985433 12332222222 33478999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|++|-..+ -+..++..+.++|+|||+++++..-.
T Consensus 229 vvANI~~~----------vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 229 VVANILAD----------VLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp EEEES-HH----------HHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred EEECCCHH----------HHHHHHHHHHHhhCCCCEEEEccccH
Confidence 99986544 34678888999999999999988643
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.5e-13 Score=105.76 Aligned_cols=99 Identities=16% Similarity=0.201 Sum_probs=80.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+.++.+|||+|||+|..+..+++. + ..+++++|+++.+++.+++++.. ..+++++++|..... ....+||+|++.
T Consensus 74 ~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~-~~~~~fD~I~~~ 152 (212)
T PRK13942 74 LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGY-EENAPYDRIYVT 152 (212)
T ss_pred CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCC-CcCCCcCEEEEC
Confidence 457789999999999999988876 2 35899999999999999998854 347999999987754 456789999987
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
....++ ...+.+.|+|||.+++..
T Consensus 153 ~~~~~~-------------~~~l~~~LkpgG~lvi~~ 176 (212)
T PRK13942 153 AAGPDI-------------PKPLIEQLKDGGIMVIPV 176 (212)
T ss_pred CCcccc-------------hHHHHHhhCCCcEEEEEE
Confidence 665544 235677899999988854
|
|
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-12 Score=104.14 Aligned_cols=103 Identities=17% Similarity=0.334 Sum_probs=81.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+.++.+|||+|||+|.++..++.. + ..+++++|+++.+++.+++++... .++.++++|..+......+.||+|++
T Consensus 38 ~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~ 117 (198)
T PRK00377 38 LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFI 117 (198)
T ss_pred CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEE
Confidence 457779999999999999998765 3 458999999999999999887543 36888999987643123467999998
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
... . ..+..+++.+.++|+|||.+++..
T Consensus 118 ~~~---~-------~~~~~~l~~~~~~LkpgG~lv~~~ 145 (198)
T PRK00377 118 GGG---S-------EKLKEIISASWEIIKKGGRIVIDA 145 (198)
T ss_pred CCC---c-------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 542 2 456788999999999999998744
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-12 Score=110.26 Aligned_cols=97 Identities=18% Similarity=0.251 Sum_probs=76.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-------CCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-------PQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-------~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
++.+|||+|||+|.++..+++.|. +|+++|+|+.|++.++++.... .++++.+.|+.+. +++||+|++
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~-~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l----~~~fD~Vv~ 218 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGA-IVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL----SGKYDTVTC 218 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----CCCcCEEEE
Confidence 466999999999999999999875 8999999999999999987532 2567777776543 367999999
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
..+++|+ +.+....+++.+.++ .++|.++
T Consensus 219 ~~vL~H~-----p~~~~~~ll~~l~~l-~~g~liI 247 (315)
T PLN02585 219 LDVLIHY-----PQDKADGMIAHLASL-AEKRLII 247 (315)
T ss_pred cCEEEec-----CHHHHHHHHHHHHhh-cCCEEEE
Confidence 9999988 555566777777754 5555543
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.44 E-value=1e-12 Score=105.67 Aligned_cols=99 Identities=13% Similarity=0.133 Sum_probs=79.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+.++.+|||+|||+|.++..+++.. ..+|+++|+++.+++.|++++... .+++++++|..+.. ....+||+|++.
T Consensus 75 ~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~-~~~~~fD~Ii~~ 153 (215)
T TIGR00080 75 LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW-EPLAPYDRIYVT 153 (215)
T ss_pred CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC-cccCCCCEEEEc
Confidence 4577799999999999999998873 235999999999999999988543 47899999997754 344689999987
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
....++ ...+.+.|+|||++++..
T Consensus 154 ~~~~~~-------------~~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 154 AAGPKI-------------PEALIDQLKEGGILVMPV 177 (215)
T ss_pred CCcccc-------------cHHHHHhcCcCcEEEEEE
Confidence 665544 345778899999998854
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.8e-12 Score=103.58 Aligned_cols=107 Identities=21% Similarity=0.238 Sum_probs=80.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC-------CCCCCCee
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFD 117 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~~D 117 (252)
++++.+|||+|||+|.++..+++.. ...|+++|+++ + ...++++++++|+.+.. .+.+++||
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~--------~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D 119 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-M--------DPIVGVDFLQGDFRDELVLKALLERVGDSKVQ 119 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-c--------cCCCCcEEEecCCCChHHHHHHHHHhCCCCCC
Confidence 4677899999999999999998873 35899999988 1 12356899999998852 14567899
Q ss_pred EEEeccchhhhcCCCCChh------hHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 118 AVIDKGTLDSLMCGTNAPI------SASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~------~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+|+++.+.++. +.+..+ ....+++++.++|+|||.+++..+....
T Consensus 120 ~V~S~~~~~~~--g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~~ 170 (209)
T PRK11188 120 VVMSDMAPNMS--GTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGEG 170 (209)
T ss_pred EEecCCCCccC--CChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCcC
Confidence 99998765543 111111 1256899999999999999998766543
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.9e-12 Score=102.04 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=79.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
..++.+|||+|||+|..+..++... .+++++|+++.+++.++++++.. .+++++.+|..+.. ...++||+|++...
T Consensus 76 ~~~~~~VLeiG~GsG~~t~~la~~~-~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~I~~~~~ 153 (212)
T PRK00312 76 LKPGDRVLEIGTGSGYQAAVLAHLV-RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW-PAYAPFDRILVTAA 153 (212)
T ss_pred CCCCCEEEEECCCccHHHHHHHHHh-CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC-CcCCCcCEEEEccC
Confidence 3467799999999999998887774 48999999999999999988543 36899999986643 23468999999876
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+++ .+.+.+.|+|||.+++...
T Consensus 154 ~~~~-------------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 154 APEI-------------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred chhh-------------hHHHHHhcCCCcEEEEEEc
Confidence 6555 2456789999999988664
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.8e-12 Score=108.75 Aligned_cols=114 Identities=17% Similarity=0.173 Sum_probs=89.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.+++.+|||+|||+|.++..++..+. .++|+|+++.|++.++.+++.. .++.+.++|+.+++ ..+++||+|+++.+
T Consensus 180 ~~~g~~vLDp~cGtG~~lieaa~~~~-~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~-~~~~~~D~Iv~dPP 257 (329)
T TIGR01177 180 VTEGDRVLDPFCGTGGFLIEAGLMGA-KVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLP-LSSESVDAIATDPP 257 (329)
T ss_pred CCCcCEEEECCCCCCHHHHHHHHhCC-eEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCC-cccCCCCEEEECCC
Confidence 46777999999999999988877754 8999999999999999988543 35789999999987 66778999999876
Q ss_pred hhhhcCC--CCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 125 LDSLMCG--TNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 125 l~~~~~~--~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+...... ........++++++.++|+|||.+++.....
T Consensus 258 yg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~~~ 297 (329)
T TIGR01177 258 YGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVPTR 297 (329)
T ss_pred CcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEcCC
Confidence 5421000 0111336889999999999999998877544
|
This family is found exclusively in the Archaea. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.8e-12 Score=105.51 Aligned_cols=110 Identities=21% Similarity=0.321 Sum_probs=84.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc-C-CCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE-E-IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~-~-~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|..+..++... ..+++++|+++.+++.++++.. . ..++.++++|+.+.. ..++||+|+++.+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~--~~~~fD~Iv~npP 184 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL--PGGRFDLIVSNPP 184 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC--CCCceeEEEECCC
Confidence 356699999999999999999874 4689999999999999999876 2 237899999986643 3568999999876
Q ss_pred hhhh-------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 125 LDSL-------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 125 l~~~-------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+... ..+....+....+++++.++|++||.+++..
T Consensus 185 y~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~ 238 (275)
T PRK09328 185 YIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI 238 (275)
T ss_pred cCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 4321 0011223445788999999999999998744
|
|
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=99.40 E-value=5.9e-12 Score=88.16 Aligned_cols=100 Identities=30% Similarity=0.515 Sum_probs=83.7
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCCeEEEccccCCCCCCCCCeeEEEeccchhh-h
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS-L 128 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~-~ 128 (252)
+++|+|||.|..+..++.....+++++|+++.++..+++... ...+++++..|+.+......+++|+|+++.++++ .
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~~ 80 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDPPLHHLV 80 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEccceeehh
Confidence 589999999999999988545699999999999999984332 2247889999998875224568999999999888 5
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
.....+++.+.+.|++||.+++.
T Consensus 81 -------~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 81 -------EDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -------hHHHHHHHHHHHHcCCCCEEEEE
Confidence 78899999999999999999875
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.5e-12 Score=104.56 Aligned_cols=109 Identities=15% Similarity=0.239 Sum_probs=83.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
++.+|||+|||+|.++..++... ..+++++|+|+.+++.|+++.... .+++++++|+.+. ++.++||+|+++.+
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~--~~~~~fD~Iv~NPP 198 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAA--LPGRKYDLIVSNPP 198 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhc--cCCCCccEEEECCC
Confidence 34689999999999999999874 458999999999999999998543 3689999998654 34557999999865
Q ss_pred hhhh------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 125 LDSL------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 125 l~~~------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+... ..+..+......+++.+.++|+|||.+++-.
T Consensus 199 y~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 199 YVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred CCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 4211 0011122345788999999999999988644
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.6e-11 Score=100.32 Aligned_cols=150 Identities=18% Similarity=0.220 Sum_probs=98.7
Q ss_pred CCCCCCChhhHHHHhccCCC-ceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHH
Q 025475 9 NTYNYGDALYWNARYVQEGG-SFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAID 86 (252)
Q Consensus 9 ~~~~~~~~~~w~~~y~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~ 86 (252)
++-.|+++++--+.|..... ....+-....+...+........+|||+|||+|.++..++.+. ..+++++|+++.|++
T Consensus 23 ~~~~~~~~~~v~~~~~g~~~~~~G~FfTP~~i~~~f~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~ 102 (279)
T PHA03411 23 RPLTYEEKEFCYNNYHGDGLGGSGAFFTPEGLAWDFTIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFAR 102 (279)
T ss_pred cccccCcHHHHHHhcccccccCceeEcCCHHHHHHHHhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHH
Confidence 33456666665555554310 1122222333332222222334699999999999998887763 358999999999999
Q ss_pred HHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCCh-----------hh--HHHHHHHHHHcccCCc
Q 025475 87 MMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAP-----------IS--ASQMLGEVSRLLKPGG 153 (252)
Q Consensus 87 ~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~-----------~~--~~~~l~~~~~~L~~gG 153 (252)
.+++++ ++++++++|+.+.. ...+||+|+++.++++........ +. ..+.+.....+|+|+|
T Consensus 103 ~Ar~n~---~~v~~v~~D~~e~~--~~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G 177 (279)
T PHA03411 103 IGKRLL---PEAEWITSDVFEFE--SNEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTG 177 (279)
T ss_pred HHHHhC---cCCEEEECchhhhc--ccCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCc
Confidence 999875 46899999998875 346899999999988861111000 00 2466777789999999
Q ss_pred EEEEEEcCCh
Q 025475 154 IYMLITYGDP 163 (252)
Q Consensus 154 ~l~i~~~~~~ 163 (252)
.+++..-+.|
T Consensus 178 ~~~~~yss~~ 187 (279)
T PHA03411 178 SAGFAYSGRP 187 (279)
T ss_pred eEEEEEeccc
Confidence 8877644433
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-11 Score=103.25 Aligned_cols=110 Identities=15% Similarity=0.241 Sum_probs=84.0
Q ss_pred CcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--C-CCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 51 SRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--P-QLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+|||+|||+|.++..++... ..+++++|+|+.+++.++++.... . +++++++|+.+. ++..+||+|+++.++.
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNPPyi 193 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEP--LAGQKIDIIVSNPPYI 193 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhcc--CcCCCccEEEECCCCC
Confidence 589999999999999999874 458999999999999999987532 2 489999998764 3444799999986533
Q ss_pred hh------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 127 SL------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 127 ~~------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.. ..+..+......++..+.++|+|||.+++-....
T Consensus 194 ~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~ 247 (284)
T TIGR00536 194 DEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW 247 (284)
T ss_pred CcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc
Confidence 11 0011223467889999999999999987755433
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.7e-12 Score=109.22 Aligned_cols=108 Identities=19% Similarity=0.248 Sum_probs=85.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCC-CCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMS-FFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~-~~~~~~~D~v~~~~~ 124 (252)
.+..+||+|||+|.++..++... ...++|+|+++.++..+.+++.. ..++.++++|+..+. .++++++|.|+++.+
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~lnFP 201 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLPSNSVEKIFVHFP 201 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCCCCceeEEEEeCC
Confidence 34589999999999999999874 45899999999999999888744 458999999997642 267889999998654
Q ss_pred hhhhcCCCCChh----hHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSLMCGTNAPI----SASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.-+. ... ....+++++.|+|++||.+.+.+-.
T Consensus 202 dPW~-----KkrHRRlv~~~fL~e~~RvLkpGG~l~l~TD~ 237 (390)
T PRK14121 202 VPWD-----KKPHRRVISEDFLNEALRVLKPGGTLELRTDS 237 (390)
T ss_pred CCcc-----ccchhhccHHHHHHHHHHHcCCCcEEEEEEEC
Confidence 3322 111 1258999999999999999997743
|
|
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.1e-12 Score=99.29 Aligned_cols=114 Identities=13% Similarity=0.174 Sum_probs=83.5
Q ss_pred hhHHHHHhhC--CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCC
Q 025475 38 ALRPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFE 112 (252)
Q Consensus 38 ~l~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~ 112 (252)
.+..++...+ .++.+|||+|||+|.++..++... ..+++++|+++.+++.++++++.. .+++++.+|+.+.....
T Consensus 27 ~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~~ 106 (196)
T PRK07402 27 EVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQL 106 (196)
T ss_pred HHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhhC
Confidence 3444444443 466799999999999999988653 458999999999999999987542 46889999886521122
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
...+|.++... . .....+++++.++|+|||.+++.....
T Consensus 107 ~~~~d~v~~~~----~-------~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 107 APAPDRVCIEG----G-------RPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred CCCCCEEEEEC----C-------cCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 23457665421 1 355788999999999999999887653
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.1e-11 Score=91.82 Aligned_cols=113 Identities=17% Similarity=0.227 Sum_probs=89.2
Q ss_pred hhHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCC
Q 025475 38 ALRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFE 112 (252)
Q Consensus 38 ~l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~ 112 (252)
.++.+..+. +.++.+++|+|||+|+.+..++..+ ..+++++|-++++++..+++.... +|+.++.+++-+.. ..
T Consensus 21 EIRal~ls~L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L-~~ 99 (187)
T COG2242 21 EIRALTLSKLRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL-PD 99 (187)
T ss_pred HHHHHHHHhhCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh-cC
Confidence 344443333 4577799999999999999999655 679999999999999999988653 58999999987653 12
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
..++|.|+..+. .....+++.+...|++||++++.....
T Consensus 100 ~~~~daiFIGGg-----------~~i~~ile~~~~~l~~ggrlV~naitl 138 (187)
T COG2242 100 LPSPDAIFIGGG-----------GNIEEILEAAWERLKPGGRLVANAITL 138 (187)
T ss_pred CCCCCEEEECCC-----------CCHHHHHHHHHHHcCcCCeEEEEeecH
Confidence 227999998765 455788999999999999999866543
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=7.9e-12 Score=97.25 Aligned_cols=113 Identities=22% Similarity=0.311 Sum_probs=87.5
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
..-|||||||+|..+..+.+.|+ .++|+|+|+.|++.|.+..-. -.++.+|+-.-.++..++||.|++...+.++.
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh-~wiGvDiSpsML~~a~~~e~e---gdlil~DMG~GlpfrpGtFDg~ISISAvQWLc 126 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGH-QWIGVDISPSMLEQAVERELE---GDLILCDMGEGLPFRPGTFDGVISISAVQWLC 126 (270)
T ss_pred CcEEEEeccCCCcchheeccCCc-eEEeecCCHHHHHHHHHhhhh---cCeeeeecCCCCCCCCCccceEEEeeeeeeec
Confidence 55899999999999999999985 899999999999999964311 25777887653338999999999998887752
Q ss_pred CCC----CChhhHHHHHHHHHHcccCCcEEEEEEcCChhhh
Q 025475 130 CGT----NAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 166 (252)
Q Consensus 130 ~~~----~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~ 166 (252)
... .+...+..++..++.+|++|+..++..+-.....
T Consensus 127 nA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~~q 167 (270)
T KOG1541|consen 127 NADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENEAQ 167 (270)
T ss_pred ccCccccChHHHHHHHhhhhhhhhccCceeEEEecccchHH
Confidence 222 2333456678889999999999999876544433
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=5e-12 Score=105.56 Aligned_cols=109 Identities=20% Similarity=0.326 Sum_probs=84.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-------CCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-------EIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~-------~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
+.+.+||++|||+|..+..++++ +..+|++||+++.+++.|++.+. ..++++++.+|..++.....++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 45669999999999999999987 46689999999999999999874 24579999999987642345789999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++..+-.+. ....-....+++.+++.|+|||.+++..
T Consensus 155 i~D~~dp~~---~~~~l~t~ef~~~~~~~L~~gGvlv~~~ 191 (283)
T PRK00811 155 IVDSTDPVG---PAEGLFTKEFYENCKRALKEDGIFVAQS 191 (283)
T ss_pred EECCCCCCC---chhhhhHHHHHHHHHHhcCCCcEEEEeC
Confidence 986432211 0111123778899999999999988753
|
|
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.9e-12 Score=101.11 Aligned_cols=100 Identities=17% Similarity=0.291 Sum_probs=78.8
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
.++|+|||+|..++.++++ +.+|+|+|+|+.|++.+++..+.. ...++...++.++. -.+++.|+|++..++|++
T Consensus 36 ~a~DvG~G~Gqa~~~iae~-~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~-g~e~SVDlI~~Aqa~HWF 113 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEH-YKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLL-GGEESVDLITAAQAVHWF 113 (261)
T ss_pred eEEEeccCCCcchHHHHHh-hhhheeecCCHHHHHHhhcCCCcccccCCcccccccccccc-CCCcceeeehhhhhHHhh
Confidence 8999999999888888888 569999999999999998876421 12333444444443 347899999999999998
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCc-EEEEEEcC
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGG-IYMLITYG 161 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG-~l~i~~~~ 161 (252)
+...+.++++|+|+++| .+.+..++
T Consensus 114 --------dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 114 --------DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred --------chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 78889999999997766 76666655
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.7e-12 Score=102.06 Aligned_cols=110 Identities=14% Similarity=0.125 Sum_probs=81.9
Q ss_pred CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-CCCCCeeEEEeccchhh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-FEDESFDAVIDKGTLDS 127 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~~~D~v~~~~~l~~ 127 (252)
+.+|||+|||+|.++..++... ..+++++|+|+.+++.+++++... +++++++|+.+... ...++||+|+++.++..
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~-~~~~~~~D~~~~l~~~~~~~fDlVv~NPPy~~ 165 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADA-GGTVHEGDLYDALPTALRGRVDILAANAPYVP 165 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-CCEEEEeechhhcchhcCCCEeEEEECCCCCC
Confidence 3489999999999999998763 348999999999999999998653 36889999876421 12357999999987542
Q ss_pred h-------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 128 L-------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 128 ~-------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. ..+....+....++..+.++|+|||.+++...
T Consensus 166 ~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~ 217 (251)
T TIGR03704 166 TDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETS 217 (251)
T ss_pred chhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 1 00111122356888888999999999987654
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=97.40 Aligned_cols=110 Identities=25% Similarity=0.432 Sum_probs=84.0
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--C--CeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP--Q--LKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~--~--v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.++.+|||+|||+|.++..++..+ .+++++|+++.+++.+++++.... + +.++.+|+.+. +.+.+||+|+++.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~-~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~d~vi~n~ 98 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNG-KKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEP--FRGDKFDVILFNP 98 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhc-ceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccccc--ccccCceEEEECC
Confidence 456689999999999999999885 599999999999999988874321 2 78888888764 3455899999987
Q ss_pred chhhh--------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSL--------------MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~--------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+.+. ..+..+......+++++.++|+|||.+++...
T Consensus 99 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~ 149 (188)
T PRK14968 99 PYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQS 149 (188)
T ss_pred CcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEc
Confidence 65431 01111234567889999999999999887653
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.1e-11 Score=99.20 Aligned_cols=120 Identities=17% Similarity=0.316 Sum_probs=90.8
Q ss_pred HHHHHhhCC--CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCCCCCC
Q 025475 40 RPFVRKYIP--TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 40 ~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~ 114 (252)
.+++.+.++ .+.+|||+|||.|.++..+++.. ..+++.+|+|..+++.+++++..+. +..+...|+.+.. .+
T Consensus 147 S~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v--~~- 223 (300)
T COG2813 147 SRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPV--EG- 223 (300)
T ss_pred HHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccccc--cc-
Confidence 455555544 33499999999999999999985 6799999999999999999986432 3356677776653 33
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+||+|++|.++|.= -.-...--++++....+.|++||.|.++....+.
T Consensus 224 kfd~IisNPPfh~G--~~v~~~~~~~~i~~A~~~L~~gGeL~iVan~~l~ 271 (300)
T COG2813 224 KFDLIISNPPFHAG--KAVVHSLAQEIIAAAARHLKPGGELWIVANRHLP 271 (300)
T ss_pred cccEEEeCCCccCC--cchhHHHHHHHHHHHHHhhccCCEEEEEEcCCCC
Confidence 89999999998842 0001122358999999999999999998875443
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-12 Score=107.26 Aligned_cols=111 Identities=27% Similarity=0.316 Sum_probs=82.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--------CC----CCeEEEccccCCC---CCCC
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------IP----QLKYLQMDVRDMS---FFED 113 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--------~~----~v~~~~~d~~~~~---~~~~ 113 (252)
++.+|||+|||-|..+......+...++|+|++...|+.|+++++. .. ...++.+|..... .+..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 6779999999999988888888878999999999999999999821 11 2456777765421 1233
Q ss_pred --CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 114 --ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 114 --~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.+||+|-|..++|+. |. +.+....+|+.+.+.|+|||+++.+.+..
T Consensus 142 ~~~~FDvVScQFalHY~-Fe--se~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYA-FE--SEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGG-GS--SHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHh-cC--CHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 589999999999996 33 45777889999999999999999988543
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.2e-11 Score=97.32 Aligned_cols=141 Identities=16% Similarity=0.191 Sum_probs=94.7
Q ss_pred CCCCCCChhhHHHHhccCCCc----eeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHc----CCCcEEEEeC
Q 025475 9 NTYNYGDALYWNARYVQEGGS----FDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD----GYEDIVNIDI 80 (252)
Q Consensus 9 ~~~~~~~~~~w~~~y~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~----~~~~v~~vD~ 80 (252)
++-.+.+++|--+.|...... ..-+.....+.+.+......+.+|||+|||+|.++..+++. ...+++++|+
T Consensus 5 ~~~~~~~~~f~~~n~~~~~~~~~~~~GqFfTP~~iAr~~~i~~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEI 84 (241)
T PHA03412 5 KALTYEEKLFIIENFHEGAFTNNSELGAFFTPIGLARDFTIDACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVEL 84 (241)
T ss_pred ccccHHHHHHHHhhcccccccccccCCccCCCHHHHHHHHHhccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEEC
Confidence 334456666666666543211 12233334454444322234669999999999999998874 2348999999
Q ss_pred CHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCC-----ChhhHHHHHHHHHHcccCCcE
Q 025475 81 SSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN-----APISASQMLGEVSRLLKPGGI 154 (252)
Q Consensus 81 s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~-----~~~~~~~~l~~~~~~L~~gG~ 154 (252)
++.+++.|+++. +++.+++.|+.... + +++||+|++|.++.-...... +......++..+.+++++|+.
T Consensus 85 D~~Al~~Ar~n~---~~~~~~~~D~~~~~-~-~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~ 158 (241)
T PHA03412 85 NHTYYKLGKRIV---PEATWINADALTTE-F-DTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTF 158 (241)
T ss_pred CHHHHHHHHhhc---cCCEEEEcchhccc-c-cCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEE
Confidence 999999999876 35889999998765 3 568999999999775421110 112356688888886666664
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=102.39 Aligned_cols=107 Identities=14% Similarity=0.248 Sum_probs=82.7
Q ss_pred CcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 51 SRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+|||+|||+|.++..++... ..+++++|+|+.+++.|+++.... .+++++++|+.+. ++.++||+|+++.++.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~--l~~~~fDlIvsNPPyi 212 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAA--LPGRRYDLIVSNPPYV 212 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhh--CCCCCccEEEECCCCC
Confidence 589999999999999998874 458999999999999999998543 3589999998764 3446799999986532
Q ss_pred hh------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SL------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
-. ..+..+......+++.+.++|+|||.+++-.
T Consensus 213 ~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~ 263 (307)
T PRK11805 213 DAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV 263 (307)
T ss_pred CccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 10 0011123445788999999999999998743
|
|
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.5e-11 Score=100.17 Aligned_cols=121 Identities=17% Similarity=0.150 Sum_probs=87.4
Q ss_pred ceeeeccchhhHHHHHhh-----CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEE
Q 025475 29 SFDWYQRYSALRPFVRKY-----IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYL 101 (252)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~-----~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~ 101 (252)
...|-...+-|...+..- +.++.+|||+|||+|.++..+++. + ...|++||+++.+.+.........+++.++
T Consensus 107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I 186 (293)
T PTZ00146 107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPI 186 (293)
T ss_pred eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEE
Confidence 445655555565444222 568889999999999999999988 2 458999999997665554444333688999
Q ss_pred EccccCCCC--CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 102 QMDVRDMSF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 102 ~~d~~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
..|+..... ...+++|+|++... . +.+...++.+++++|||||.+++.
T Consensus 187 ~~Da~~p~~y~~~~~~vDvV~~Dva--~-------pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 187 IEDARYPQKYRMLVPMVDVIFADVA--Q-------PDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ECCccChhhhhcccCCCCEEEEeCC--C-------cchHHHHHHHHHHhccCCCEEEEE
Confidence 999865310 23357999998753 1 255667778899999999999984
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3e-11 Score=106.47 Aligned_cols=116 Identities=18% Similarity=0.276 Sum_probs=89.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||+|..+..+++. +..+++++|+++.+++.++++++.. .++++++.|..+++....++||.|+++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~D 314 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILVD 314 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEEC
Confidence 356779999999999999998886 2458999999999999999998653 357899999887653345689999987
Q ss_pred cchhhhcCCCCCh---------------hhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 123 GTLDSLMCGTNAP---------------ISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 123 ~~l~~~~~~~~~~---------------~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.++........++ ....+++..+.+.|+|||.++.++++.
T Consensus 315 aPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~ 369 (431)
T PRK14903 315 APCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTV 369 (431)
T ss_pred CCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 6553321111111 134778999999999999999998763
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-11 Score=110.55 Aligned_cols=107 Identities=17% Similarity=0.263 Sum_probs=81.5
Q ss_pred CCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 50 SSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
+.+|||+|||+|.++..++.. ...+++++|+|+.+++.|+++.... .+++++++|+.+. ...++||+|+++.++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~--~~~~~fDlIvsNPPY 216 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFEN--IEKQKFDFIVSNPPY 216 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhh--CcCCCccEEEECCCC
Confidence 358999999999999988875 3458999999999999999987532 3688999998654 345689999998754
Q ss_pred hhh-------------------cCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 126 DSL-------------------MCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 126 ~~~-------------------~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
... ..+..+.+....+++.+.++|+|||.+++.
T Consensus 217 i~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 217 ISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred CCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 321 011122344577888999999999998764
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.8e-11 Score=92.87 Aligned_cols=102 Identities=14% Similarity=0.190 Sum_probs=78.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...++++++++|+.+++ +++..+|.|+++..++.
T Consensus 12 ~~~~~vLEiG~G~G~lt~~l~~~~-~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~-~~~~~~d~vi~n~Py~~ 89 (169)
T smart00650 12 RPGDTVLEIGPGKGALTEELLERA-ARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFD-LPKLQPYKVVGNLPYNI 89 (169)
T ss_pred CCcCEEEEECCCccHHHHHHHhcC-CeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCC-ccccCCCEEEECCCccc
Confidence 456699999999999999999984 5999999999999999999866568999999999987 56667999999877653
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. .+...++++.. .+.++|.+++..
T Consensus 90 ~------~~~i~~~l~~~--~~~~~~~l~~q~ 113 (169)
T smart00650 90 S------TPILFKLLEEP--PAFRDAVLMVQK 113 (169)
T ss_pred H------HHHHHHHHhcC--CCcceEEEEEEH
Confidence 2 23344444332 234677776643
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.8e-11 Score=98.80 Aligned_cols=115 Identities=15% Similarity=0.114 Sum_probs=86.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||+|..+..+++.. .+.++++|+++.+++.++++++.. .++++++.|..+++ ...++||+|+++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Vl~D 147 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFG-AAVPKFDAILLD 147 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhh-hhccCCCEEEEc
Confidence 3567799999999999999988762 358999999999999999998653 36888999987765 344569999987
Q ss_pred cchhhhcCCCCC--------hh-------hHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 123 GTLDSLMCGTNA--------PI-------SASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 123 ~~l~~~~~~~~~--------~~-------~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
....-...-..+ ++ ...++++.+.++|+|||+++.+++..
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~ 202 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSL 202 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 643321100011 11 23568999999999999999888763
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.8e-11 Score=110.68 Aligned_cols=125 Identities=15% Similarity=0.155 Sum_probs=92.2
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEccccCCCCCC
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDMSFFE 112 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d~~~~~~~~ 112 (252)
+..+.++.... ++.+|||+|||+|.++..++..|..+|+++|+|+.+++.++++++.+ .+++++++|+.++....
T Consensus 527 r~~R~~~~~~~-~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~ 605 (702)
T PRK11783 527 RPTRRMIGQMA-KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEA 605 (702)
T ss_pred HHHHHHHHHhc-CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHc
Confidence 33445555543 47799999999999999999988768999999999999999998532 26899999987753112
Q ss_pred CCCeeEEEeccchhhhcCC----CCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 113 DESFDAVIDKGTLDSLMCG----TNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~----~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
..+||+|+++.+...-.-. .....+...++..+.++|+|||.+++.....
T Consensus 606 ~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~~~ 659 (702)
T PRK11783 606 REQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNNKR 659 (702)
T ss_pred CCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 4689999998763211000 0012456778889999999999998876543
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.6e-11 Score=104.50 Aligned_cols=115 Identities=18% Similarity=0.283 Sum_probs=86.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCC-CCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSF-FEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~-~~~~~~D~v~~~~ 123 (252)
..++.+|||+|||+|..+..+++.. ..+++++|+++.+++.++++++..+ +++++++|+.+.+. ...++||.|+++.
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 321 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWDGQPFDRILLDA 321 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcccCCCCEEEECC
Confidence 3467799999999999999999874 3589999999999999999986543 47889999987642 2356799999876
Q ss_pred chhhhcC--------CCCChh-------hHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMC--------GTNAPI-------SASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~--------~~~~~~-------~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+...... ....++ ...+++..+.++|+|||.++++++.
T Consensus 322 Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 322 PCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 5331100 001112 2357899999999999999998864
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.2e-11 Score=95.90 Aligned_cols=106 Identities=17% Similarity=0.240 Sum_probs=75.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC-------CCCCCCee
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FFEDESFD 117 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~-------~~~~~~~D 117 (252)
++++.+|||+|||+|.++..++... ..+++++|+++.+ ..++++++++|+.+.. ..+.++||
T Consensus 30 i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~~~i~~~~~d~~~~~~~~~l~~~~~~~~~D 100 (188)
T TIGR00438 30 IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PIENVDFIRGDFTDEEVLNKIRERVGDDKVD 100 (188)
T ss_pred cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cCCCceEEEeeCCChhHHHHHHHHhCCCCcc
Confidence 4678899999999999999888763 4479999999864 1246788888987642 13456799
Q ss_pred EEEeccchhhhcCC-C---CChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 118 AVIDKGTLDSLMCG-T---NAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 118 ~v~~~~~l~~~~~~-~---~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|+++.+.+..... . ...+...++++.++++|+|||.+++..+.
T Consensus 101 ~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~ 148 (188)
T TIGR00438 101 VVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQ 148 (188)
T ss_pred EEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEcc
Confidence 99987542210000 0 01123578999999999999999986543
|
|
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.1e-11 Score=98.72 Aligned_cols=100 Identities=18% Similarity=0.237 Sum_probs=84.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++..+|+|||+|.|.++..+++.. ..+++.+|+ |..++.+++ .++++++.+|+++. ++. +|++++.+++|
T Consensus 99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~----~~rv~~~~gd~f~~--~P~--~D~~~l~~vLh 169 (241)
T PF00891_consen 99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE----ADRVEFVPGDFFDP--LPV--ADVYLLRHVLH 169 (241)
T ss_dssp TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH----TTTEEEEES-TTTC--CSS--ESEEEEESSGG
T ss_pred cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc----ccccccccccHHhh--hcc--ccceeeehhhh
Confidence 455689999999999999999884 568999999 889998888 46899999999833 454 99999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCC--cEEEEEEcC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPG--GIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~g--G~l~i~~~~ 161 (252)
++ ++++..++|+++++.|+|| |.|+|.++.
T Consensus 170 ~~-----~d~~~~~iL~~~~~al~pg~~g~llI~e~~ 201 (241)
T PF00891_consen 170 DW-----SDEDCVKILRNAAAALKPGKDGRLLIIEMV 201 (241)
T ss_dssp GS------HHHHHHHHHHHHHHSEECTTEEEEEEEEE
T ss_pred hc-----chHHHHHHHHHHHHHhCCCCCCeEEEEeec
Confidence 99 8999999999999999999 999999864
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.8e-11 Score=99.90 Aligned_cols=113 Identities=14% Similarity=0.271 Sum_probs=85.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+++.+|||+|||+|.++..++... ..+++++|+++.+++.|++.+.. .++++++.+|..+......++||+|+++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~ 144 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDG 144 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeC
Confidence 456689999999999999998763 56899999999999999998753 35799999998765312335799999863
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
. +.. ..+..-....+++.+.+.|+|||.+++..+..+
T Consensus 145 ~-~~~--~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~~ 181 (262)
T PRK04457 145 F-DGE--GIIDALCTQPFFDDCRNALSSDGIFVVNLWSRD 181 (262)
T ss_pred C-CCC--CCccccCcHHHHHHHHHhcCCCcEEEEEcCCCc
Confidence 1 110 111112347899999999999999998665543
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.4e-11 Score=104.69 Aligned_cols=117 Identities=20% Similarity=0.244 Sum_probs=87.7
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEccccCCCC-C--
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDMSF-F-- 111 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d~~~~~~-~-- 111 (252)
.+..+.. +.++.+|||+|||+|.++..++..+..+++++|+|+.+++.+++++..+ .+++++++|+.+... +
T Consensus 211 ~R~~~~~-~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~ 289 (396)
T PRK15128 211 SRLATRR-YVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRD 289 (396)
T ss_pred HHHHHHH-hcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHh
Confidence 3334433 3457899999999999998877767669999999999999999998532 268899999987521 1
Q ss_pred CCCCeeEEEeccchhhhcCCCCCh-------hhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAP-------ISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~-------~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..++||+|+++.+...- +. .....++..+.++|++||.+++.+++
T Consensus 290 ~~~~fDlVilDPP~f~~-----~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs 341 (396)
T PRK15128 290 RGEKFDVIVMDPPKFVE-----NKSQLMGACRGYKDINMLAIQLLNPGGILLTFSCS 341 (396)
T ss_pred cCCCCCEEEECCCCCCC-----ChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 24579999999774221 11 23455666788999999999987765
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.6e-11 Score=91.96 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=84.8
Q ss_pred hhhHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCC
Q 025475 37 SALRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFED 113 (252)
Q Consensus 37 ~~l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~ 113 (252)
.....++... +.++.+|||||||+|..+..+++... +|+.+|..+...+.|++++... .|+.++++|...-- .+.
T Consensus 59 ~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~-~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~-~~~ 136 (209)
T COG2518 59 HMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVG-RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGW-PEE 136 (209)
T ss_pred HHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhC-eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCC-CCC
Confidence 3344444333 45788999999999999999999844 9999999999999999999654 47999999987753 355
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+||.|+.......+ +. .+.+.|++||++++..-
T Consensus 137 aPyD~I~Vtaaa~~v---------P~----~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 137 APYDRIIVTAAAPEV---------PE----ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CCcCEEEEeeccCCC---------CH----HHHHhcccCCEEEEEEc
Confidence 789999987765554 22 34566999999998663
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=9.8e-11 Score=103.96 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=85.1
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.++.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++... .+++++++|+.+.. ++++||+|++..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~--~~~~fD~Vl~D~ 326 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFS--PEEQPDAILLDA 326 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccc--cCCCCCEEEEcC
Confidence 46779999999999999888775 2358999999999999999988643 36899999998774 456899999764
Q ss_pred chhhhcCCC--------CChh-------hHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 124 TLDSLMCGT--------NAPI-------SASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 124 ~l~~~~~~~--------~~~~-------~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+..-..... ..++ ....++.++.++|+|||+++.+++..
T Consensus 327 Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~ 380 (445)
T PRK14904 327 PCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSI 380 (445)
T ss_pred CCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 321110000 0111 23568999999999999999998764
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.3e-10 Score=90.54 Aligned_cols=101 Identities=23% Similarity=0.383 Sum_probs=65.2
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeE
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
+.+.+.+ .++...|.|+|||.+.++..+.. +. +|+..|+... +-.+..+|+...| +++++.|+
T Consensus 63 iI~~l~~-~~~~~viaD~GCGdA~la~~~~~-~~-~V~SfDLva~-------------n~~Vtacdia~vP-L~~~svDv 125 (219)
T PF05148_consen 63 IIEWLKK-RPKSLVIADFGCGDAKLAKAVPN-KH-KVHSFDLVAP-------------NPRVTACDIANVP-LEDESVDV 125 (219)
T ss_dssp HHHHHCT-S-TTS-EEEES-TT-HHHHH--S-----EEEEESS-S-------------STTEEES-TTS-S---TT-EEE
T ss_pred HHHHHHh-cCCCEEEEECCCchHHHHHhccc-Cc-eEEEeeccCC-------------CCCEEEecCccCc-CCCCceeE
Confidence 3344443 35566999999999999976643 23 7999999653 3467899999999 99999999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+|+...|.- .+...++.|+.|+||+||.|.|.+....-
T Consensus 126 ~VfcLSLMG--------Tn~~~fi~EA~RvLK~~G~L~IAEV~SRf 163 (219)
T PF05148_consen 126 AVFCLSLMG--------TNWPDFIREANRVLKPGGILKIAEVKSRF 163 (219)
T ss_dssp EEEES---S--------S-HHHHHHHHHHHEEEEEEEEEEEEGGG-
T ss_pred EEEEhhhhC--------CCcHHHHHHHHheeccCcEEEEEEecccC
Confidence 997665544 58899999999999999999999965433
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=99.24 E-value=8.2e-11 Score=99.72 Aligned_cols=111 Identities=15% Similarity=0.234 Sum_probs=83.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhh--c-------CCCCCeEEEccccCCCCCCCCCe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKY--E-------EIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~--~-------~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
.+.+.+||++|||+|..+..+++.. ..++++||+++.+++.|+... . ..++++++.+|..++.....++|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 3556699999999999999999874 569999999999999999721 1 24689999999988632345689
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+|++..+ ... ...........+++.+++.|+|||++++..
T Consensus 228 DVIIvDl~-DP~-~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs 268 (374)
T PRK01581 228 DVIIIDFP-DPA-TELLSTLYTSELFARIATFLTEDGAFVCQS 268 (374)
T ss_pred cEEEEcCC-Ccc-ccchhhhhHHHHHHHHHHhcCCCcEEEEec
Confidence 99999742 110 000112234778999999999999988765
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.3e-11 Score=94.64 Aligned_cols=100 Identities=18% Similarity=0.263 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+.++.+|||+|||+|..+..++.. + ...|+++|+.+..++.|++++.. ..++.++++|..... ....+||.|++.
T Consensus 70 l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~-~~~apfD~I~v~ 148 (209)
T PF01135_consen 70 LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW-PEEAPFDRIIVT 148 (209)
T ss_dssp C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT-GGG-SEEEEEES
T ss_pred cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc-ccCCCcCEEEEe
Confidence 578889999999999999999887 3 34799999999999999999864 348999999987653 345689999998
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.....+ -..+.+.|++||++++..-
T Consensus 149 ~a~~~i-------------p~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 149 AAVPEI-------------PEALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp SBBSS---------------HHHHHTEEEEEEEEEEES
T ss_pred eccchH-------------HHHHHHhcCCCcEEEEEEc
Confidence 765544 2335677999999988553
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=8e-11 Score=99.53 Aligned_cols=99 Identities=18% Similarity=0.164 Sum_probs=77.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
++++.+|||+|||+|.++..+++.. ...|+++|+++.+++.|+++++. ..++.++++|..+.. ....+||+|++.
T Consensus 78 i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~-~~~~~fD~Ii~~ 156 (322)
T PRK13943 78 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGV-PEFAPYDVIFVT 156 (322)
T ss_pred CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcc-cccCCccEEEEC
Confidence 4567799999999999999998863 23699999999999999998754 346889999987664 344679999987
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
....++ ...+.+.|+|||.+++..
T Consensus 157 ~g~~~i-------------p~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 157 VGVDEV-------------PETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CchHHh-------------HHHHHHhcCCCCEEEEEe
Confidence 655544 234667899999988754
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.1e-10 Score=101.58 Aligned_cols=114 Identities=18% Similarity=0.244 Sum_probs=85.5
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCC---CCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSF---FEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~---~~~~~~D~v~ 120 (252)
.++.+|||+|||+|..+..+++. + .++++++|+++.+++.+++++... .+++++++|+.+.+. ...++||.|+
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~Vl 330 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRIL 330 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEEE
Confidence 46779999999999999999886 2 458999999999999999998653 368999999987642 2346899999
Q ss_pred eccchhhhcCCC--C------Chhh-------HHHHHHHHHHcccCCcEEEEEEcC
Q 025475 121 DKGTLDSLMCGT--N------APIS-------ASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 121 ~~~~l~~~~~~~--~------~~~~-------~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++....-..... + ++++ ..++++++.++|||||+++.+++.
T Consensus 331 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcs 386 (434)
T PRK14901 331 LDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCT 386 (434)
T ss_pred EeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 865322110000 0 1111 478899999999999999988765
|
|
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.8e-10 Score=90.63 Aligned_cols=105 Identities=22% Similarity=0.325 Sum_probs=72.6
Q ss_pred CCCcEEEEcccCcH----hHHHHHHc-----C-CCcEEEEeCCHHHHHHHHHhh-------------------c--C---
Q 025475 49 TSSRVLMVGCGNAL----MSEDMVKD-----G-YEDIVNIDISSVAIDMMKMKY-------------------E--E--- 94 (252)
Q Consensus 49 ~~~~vLD~G~G~G~----~~~~l~~~-----~-~~~v~~vD~s~~~i~~a~~~~-------------------~--~--- 94 (252)
+..+|+..||++|. ++..+.+. + ..+++|+|+|+.+++.|++-. . +
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34599999999996 33334441 1 248999999999999998721 0 0
Q ss_pred ------CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 95 ------IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 95 ------~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...|+|.+.|+.+.+ ...+.||+|+|.+++.++ +.+...++++.+++.|+|||+|++..
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~-~~~~~fD~I~CRNVlIYF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPD-PPFGRFDLIFCRNVLIYF-----DPETQQRVLRRLHRSLKPGGYLFLGH 175 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S-------EEEEEE-SSGGGS------HHHHHHHHHHHGGGEEEEEEEEE-T
T ss_pred eEChHHcCceEEEecccCCCC-cccCCccEEEecCEEEEe-----CHHHHHHHHHHHHHHcCCCCEEEEec
Confidence 026889999998833 456789999999999999 88999999999999999999999855
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2e-10 Score=101.97 Aligned_cols=114 Identities=17% Similarity=0.221 Sum_probs=85.1
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.++.+|||+|||+|..+..+++. +..+++++|+++.+++.++++++.. .+++++++|+.+......++||+|+++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~D~ 328 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILVDA 328 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEEcC
Confidence 46679999999999999999886 2468999999999999999988643 3689999999876421226899999876
Q ss_pred chhhhcCC--------CCChhh-------HHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCG--------TNAPIS-------ASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~--------~~~~~~-------~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
........ ..++.+ ...+++.+.++|+|||.++.+++.
T Consensus 329 Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 329 PCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 53221000 011112 256899999999999999987765
|
|
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-10 Score=95.80 Aligned_cols=105 Identities=13% Similarity=0.192 Sum_probs=81.9
Q ss_pred CCcEEEEcccCcH----hHHHHHHcC-----CCcEEEEeCCHHHHHHHHHhh------------------cC------C-
Q 025475 50 SSRVLMVGCGNAL----MSEDMVKDG-----YEDIVNIDISSVAIDMMKMKY------------------EE------I- 95 (252)
Q Consensus 50 ~~~vLD~G~G~G~----~~~~l~~~~-----~~~v~~vD~s~~~i~~a~~~~------------------~~------~- 95 (252)
..+|+..||++|. ++..+.+.. ..+|+|+|+|+.+++.|++-. .. .
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4699999999996 333333421 247999999999999998741 00 0
Q ss_pred --------CCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 96 --------PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 96 --------~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|+|.+.|+.+.+....+.||+|+|.+++.|+ +++.+.++++++++.|+|||+|++..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF-----~~~~~~~vl~~l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYF-----DKTTQERILRRFVPLLKPDGLLFAGH 262 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcC-----CHHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 257888899887541235789999999999999 88899999999999999999987754
|
|
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.7e-10 Score=96.06 Aligned_cols=106 Identities=24% Similarity=0.396 Sum_probs=80.4
Q ss_pred cEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 52 RVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
+|||+|||+|..+..++... ..+|+++|+|+.+++.|+++....+ ++.+++.|.++.. .++||+||+|.++-.-
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~~~---~~~fDlIVsNPPYip~ 189 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFEPL---RGKFDLIVSNPPYIPA 189 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccccc---CCceeEEEeCCCCCCC
Confidence 79999999999999999985 4599999999999999999986543 4455555655542 2389999999875432
Q ss_pred c------------------CCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 129 M------------------CGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 129 ~------------------~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. .+....+....++.++.+.|++||.+++-.-
T Consensus 190 ~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le~g 239 (280)
T COG2890 190 EDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILEIG 239 (280)
T ss_pred cccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEEEC
Confidence 1 0112234568888999999999998877553
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=99.20 E-value=3.7e-10 Score=99.79 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=82.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC-C--CeEEEccccCCCC-CCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP-Q--LKYLQMDVRDMSF-FEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~-~--v~~~~~d~~~~~~-~~~~~~D~v~~~ 122 (252)
.++.+|||+|||+|..+..+++. +.++++++|+++.+++.++++++..+ . +.+..+|...... ...++||.|++.
T Consensus 237 ~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~VllD 316 (426)
T TIGR00563 237 QNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILLD 316 (426)
T ss_pred CCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEEc
Confidence 46779999999999999999886 34589999999999999999986533 2 3335666655431 145679999976
Q ss_pred cchhhhcCC--CC------Chh-------hHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 123 GTLDSLMCG--TN------API-------SASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 123 ~~l~~~~~~--~~------~~~-------~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
......... .+ .++ ...++++++.++|||||.+++++++-
T Consensus 317 aPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~ 371 (426)
T TIGR00563 317 APCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSV 371 (426)
T ss_pred CCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 432221000 00 111 24788999999999999999998764
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.6e-11 Score=101.41 Aligned_cols=127 Identities=18% Similarity=0.137 Sum_probs=98.9
Q ss_pred chhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEccccCCCC-
Q 025475 36 YSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDMSF- 110 (252)
Q Consensus 36 ~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d~~~~~~- 110 (252)
++..+..+..... +.+||++-|-||.++..++..|..+|+.||+|..++++|+++++-+ ..+.++++|++++-.
T Consensus 205 qR~~R~~l~~~~~-GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~ 283 (393)
T COG1092 205 QRDNRRALGELAA-GKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRK 283 (393)
T ss_pred hHHHHHHHhhhcc-CCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHH
Confidence 4555667777767 8899999999999999999999889999999999999999998532 257899999988632
Q ss_pred --CCCCCeeEEEeccchhhh-cC-CCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 111 --FEDESFDAVIDKGTLDSL-MC-GTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 111 --~~~~~~D~v~~~~~l~~~-~~-~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
-...+||+|++.++-..- .. ...-..+...++..+.++|+|||.++++++...
T Consensus 284 ~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~~ 340 (393)
T COG1092 284 AERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSRH 340 (393)
T ss_pred HHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 234589999998762210 00 012235668889999999999999999987644
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-10 Score=96.42 Aligned_cols=107 Identities=19% Similarity=0.269 Sum_probs=81.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
+.+.+||++|||+|..+..+++.. ..+++++|+++.+++.+++.+.. .++++++.+|..+......++||+|+
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi 150 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVII 150 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEE
Confidence 345599999999999999998875 56899999999999999997632 24688888887664212346899999
Q ss_pred eccchhhhcCCCCChhh--HHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPIS--ASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+..+...- +... ...+++.+.++|+|||.+++..
T Consensus 151 ~D~~~~~~-----~~~~l~~~ef~~~~~~~L~pgG~lv~~~ 186 (270)
T TIGR00417 151 VDSTDPVG-----PAETLFTKEFYELLKKALNEDGIFVAQS 186 (270)
T ss_pred EeCCCCCC-----cccchhHHHHHHHHHHHhCCCcEEEEcC
Confidence 87542211 1122 4688899999999999998864
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.4e-11 Score=96.79 Aligned_cols=117 Identities=25% Similarity=0.381 Sum_probs=92.8
Q ss_pred HHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----C----CCeEEEccccCC-----
Q 025475 42 FVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----P----QLKYLQMDVRDM----- 108 (252)
Q Consensus 42 ~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~----~v~~~~~d~~~~----- 108 (252)
+|....+++..++++|||-|..++.....|..+++|+||++-.|+.|+.++.+. . .+.++.+|.+..
T Consensus 110 LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~ 189 (389)
T KOG1975|consen 110 LINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDL 189 (389)
T ss_pred HHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHh
Confidence 345556778899999999999888888888889999999999999999988531 1 357888887542
Q ss_pred CCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 109 SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 109 ~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
-++.+.+||+|-|.+++|+. |. +.+..+-+++++.+.|+|||+++-+.+.
T Consensus 190 ~e~~dp~fDivScQF~~HYa-Fe--tee~ar~~l~Nva~~LkpGG~FIgTiPd 239 (389)
T KOG1975|consen 190 LEFKDPRFDIVSCQFAFHYA-FE--TEESARIALRNVAKCLKPGGVFIGTIPD 239 (389)
T ss_pred ccCCCCCcceeeeeeeEeee-ec--cHHHHHHHHHHHHhhcCCCcEEEEecCc
Confidence 11345559999999999984 22 4467788999999999999999887654
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.1e-10 Score=96.46 Aligned_cols=110 Identities=22% Similarity=0.348 Sum_probs=83.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCC-CCCCCeeE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSF-FEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~-~~~~~~D~ 118 (252)
.+.+.+||++|||.|..+..++++. ..+++.||+++.+++.+++.+.. .++++++.+|...+.. .+.++||+
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDv 168 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDA 168 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCE
Confidence 3567799999999999999999884 56899999999999999998742 3589999999876531 23568999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|++...-.+. ....-....+++.+.+.|+|||.+++..
T Consensus 169 Ii~D~~dp~~---~~~~L~t~ef~~~~~~~L~pgGvlv~q~ 206 (308)
T PLN02366 169 IIVDSSDPVG---PAQELFEKPFFESVARALRPGGVVCTQA 206 (308)
T ss_pred EEEcCCCCCC---chhhhhHHHHHHHHHHhcCCCcEEEECc
Confidence 9986432211 0111124678999999999999997643
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.9e-10 Score=90.86 Aligned_cols=104 Identities=5% Similarity=0.042 Sum_probs=77.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++.+|||+|||+|.++..++.++..+++++|.++.+++.++++++.. .+++++++|+.+.......+||+|+++.++.
T Consensus 53 ~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~~~~~fDlV~~DPPy~ 132 (199)
T PRK10909 53 VDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQPGTPHNVVFVDPPFR 132 (199)
T ss_pred CCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhhcCCCceEEEECCCCC
Confidence 46699999999999999877776679999999999999999987543 3689999998764212245699999998743
Q ss_pred hhcCCCCChhhHHHHHHHHHH--cccCCcEEEEEEc
Q 025475 127 SLMCGTNAPISASQMLGEVSR--LLKPGGIYMLITY 160 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~--~L~~gG~l~i~~~ 160 (252)
. .....+++.+.. +|+++|.+++...
T Consensus 133 ~--------g~~~~~l~~l~~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 133 K--------GLLEETINLLEDNGWLADEALIYVESE 160 (199)
T ss_pred C--------ChHHHHHHHHHHCCCcCCCcEEEEEec
Confidence 2 223344444443 4789998887653
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.3e-11 Score=96.65 Aligned_cols=111 Identities=21% Similarity=0.283 Sum_probs=85.6
Q ss_pred hHHHHHhhCC-CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-CCCCCe
Q 025475 39 LRPFVRKYIP-TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-FEDESF 116 (252)
Q Consensus 39 l~~~~~~~~~-~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-~~~~~~ 116 (252)
+.+.|...-. +-.++||+|||||..+..+... ..+++|||+|.+|++.|.++-- --+..++++..+.. ..+++|
T Consensus 114 l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~-a~~ltGvDiS~nMl~kA~eKg~---YD~L~~Aea~~Fl~~~~~er~ 189 (287)
T COG4976 114 LAEMIGKADLGPFRRMLDLGCGTGLTGEALRDM-ADRLTGVDISENMLAKAHEKGL---YDTLYVAEAVLFLEDLTQERF 189 (287)
T ss_pred HHHHHHhccCCccceeeecccCcCcccHhHHHH-HhhccCCchhHHHHHHHHhccc---hHHHHHHHHHHHhhhccCCcc
Confidence 4444444322 2359999999999999999887 4589999999999999987631 11334455543321 456789
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+|++..++.++ -.+..++--+...|+|||.+.++.-
T Consensus 190 DLi~AaDVl~Yl-------G~Le~~~~~aa~~L~~gGlfaFSvE 226 (287)
T COG4976 190 DLIVAADVLPYL-------GALEGLFAGAAGLLAPGGLFAFSVE 226 (287)
T ss_pred cchhhhhHHHhh-------cchhhHHHHHHHhcCCCceEEEEec
Confidence 999999999999 8899999999999999999998773
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.16 E-value=3.2e-10 Score=92.11 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=80.0
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCC-----CCCCCee
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF-----FEDESFD 117 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~-----~~~~~~D 117 (252)
.++.+|||+|||+|..+..++.. +.++++++|+++++++.|+++++.. .+++++.+|+.+..+ .+.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 35669999999999988888765 3569999999999999999998643 368999999876421 1246899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
+|++.. +......++..+.++|+|||.+++-
T Consensus 147 ~VfiDa----------~k~~y~~~~~~~~~ll~~GG~ii~d 177 (234)
T PLN02781 147 FAFVDA----------DKPNYVHFHEQLLKLVKVGGIIAFD 177 (234)
T ss_pred EEEECC----------CHHHHHHHHHHHHHhcCCCeEEEEE
Confidence 999753 2245667899999999999988763
|
|
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.2e-10 Score=92.12 Aligned_cols=94 Identities=21% Similarity=0.328 Sum_probs=77.8
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
..++||+|+|.|..+..++.. +.+|++.|.|+.|..+.+++ ..+ +.+..++. -.+.+||+|.|.++|+.-
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~-f~~v~aTE~S~~Mr~rL~~k-----g~~--vl~~~~w~-~~~~~fDvIscLNvLDRc- 164 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPL-FKEVYATEASPPMRWRLSKK-----GFT--VLDIDDWQ-QTDFKFDVISCLNVLDRC- 164 (265)
T ss_pred CCceEEecCCCcHHHHHHHhh-cceEEeecCCHHHHHHHHhC-----CCe--EEehhhhh-ccCCceEEEeehhhhhcc-
Confidence 458999999999999999887 55899999999998877765 233 33444444 234579999999999988
Q ss_pred CCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 130 CGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.++..+|+.+++.|+|+|.++++.
T Consensus 165 ------~~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 165 ------DRPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred ------CCHHHHHHHHHHHhCCCCEEEEEE
Confidence 899999999999999999998865
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-09 Score=83.07 Aligned_cols=168 Identities=15% Similarity=0.212 Sum_probs=106.8
Q ss_pred hhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhc
Q 025475 16 ALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYE 93 (252)
Q Consensus 16 ~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~ 93 (252)
..-++..|+...++|-.......-...+..+ ....++|+|||+|..+.++++. +...+.++|++|.+.+...+...
T Consensus 12 ~~~f~dVYEPaEDTFlLlDaLekd~~eL~~~--~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~ 89 (209)
T KOG3191|consen 12 RLDFSDVYEPAEDTFLLLDALEKDAAELKGH--NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR 89 (209)
T ss_pred hhhhhhccCccchhhHHHHHHHHHHHHHhhc--CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH
Confidence 3334566666555543322211112222222 2568999999999999999887 35579999999999998877764
Q ss_pred CC-CCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCC--------------CCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 94 EI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCG--------------TNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 94 ~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~--------------~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
.+ .++..+++|+.+.- ..++.|+++.+..+--.-+. ....+-..+++..+-.+|.|.|.+++.
T Consensus 90 ~n~~~~~~V~tdl~~~l--~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv 167 (209)
T KOG3191|consen 90 CNRVHIDVVRTDLLSGL--RNESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLV 167 (209)
T ss_pred hcCCccceeehhHHhhh--ccCCccEEEECCCcCcCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEee
Confidence 33 36789999998764 44899999998865433221 223334577788888999999999887
Q ss_pred EcC--ChhhhhhhccccccceeEEEEEecCCCC
Q 025475 159 TYG--DPKARMIHLKWKVYNWKIELYIIARPGF 189 (252)
Q Consensus 159 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 (252)
... .|..-...+ ....|........+.|.
T Consensus 168 ~~~~N~p~ei~k~l--~~~g~~~~~~~~Rk~~~ 198 (209)
T KOG3191|consen 168 ALRANKPKEILKIL--EKKGYGVRIAMQRKAGG 198 (209)
T ss_pred ehhhcCHHHHHHHH--hhcccceeEEEEEecCC
Confidence 754 444333333 33444433333333333
|
|
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-10 Score=91.98 Aligned_cols=90 Identities=23% Similarity=0.447 Sum_probs=73.1
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
+....|.|+|||.+.++. .. ...|+.+|+.+ .+-+++.+|+.+.| +++++.|++|+...|.
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~-~~kV~SfDL~a-------------~~~~V~~cDm~~vP-l~d~svDvaV~CLSLM- 239 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SE-RHKVHSFDLVA-------------VNERVIACDMRNVP-LEDESVDVAVFCLSLM- 239 (325)
T ss_pred cCceEEEecccchhhhhh---cc-ccceeeeeeec-------------CCCceeeccccCCc-CccCcccEEEeeHhhh-
Confidence 556699999999998776 22 34899999855 25688999999998 9999999999654433
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
-.+...++.+++|+|++||.++|.+....
T Consensus 240 -------gtn~~df~kEa~RiLk~gG~l~IAEv~SR 268 (325)
T KOG3045|consen 240 -------GTNLADFIKEANRILKPGGLLYIAEVKSR 268 (325)
T ss_pred -------cccHHHHHHHHHHHhccCceEEEEehhhh
Confidence 26889999999999999999999986543
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.3e-10 Score=87.01 Aligned_cols=120 Identities=22% Similarity=0.273 Sum_probs=93.4
Q ss_pred chhhHHHHHhhCCCCCc-EEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCC-CeEEEccccCCC-
Q 025475 36 YSALRPFVRKYIPTSSR-VLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQ-LKYLQMDVRDMS- 109 (252)
Q Consensus 36 ~~~l~~~~~~~~~~~~~-vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~-v~~~~~d~~~~~- 109 (252)
...+.+.+...++.... |||||||||..+..++.+- .....-.|+++......+..... .+| ..-+..|+.+.+
T Consensus 11 k~pIl~vL~~~l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w 90 (204)
T PF06080_consen 11 KDPILEVLKQYLPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPW 90 (204)
T ss_pred HhHHHHHHHHHhCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCC
Confidence 34577888888887776 9999999999999999984 55888999998886666655432 222 234566766542
Q ss_pred CC------CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 110 FF------EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 110 ~~------~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.. ..++||+|++.+++|-. +.+....+++.+.++|++||.|++..+
T Consensus 91 ~~~~~~~~~~~~~D~i~~~N~lHI~-----p~~~~~~lf~~a~~~L~~gG~L~~YGP 142 (204)
T PF06080_consen 91 PWELPAPLSPESFDAIFCINMLHIS-----PWSAVEGLFAGAARLLKPGGLLFLYGP 142 (204)
T ss_pred ccccccccCCCCcceeeehhHHHhc-----CHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 01 24589999999999988 889999999999999999999998653
|
The function of this family is unknown. |
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.5e-10 Score=87.32 Aligned_cols=76 Identities=24% Similarity=0.429 Sum_probs=66.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.+.+|+|+|||||.++...+..|..+|+|+|+++++++.++++.+.. .++.++++|+.++. +.+|.|++|.++-.
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~----~~~dtvimNPPFG~ 120 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFR----GKFDTVIMNPPFGS 120 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcC----CccceEEECCCCcc
Confidence 45589999999999999999999889999999999999999998653 47999999999875 46889999987554
Q ss_pred h
Q 025475 128 L 128 (252)
Q Consensus 128 ~ 128 (252)
.
T Consensus 121 ~ 121 (198)
T COG2263 121 Q 121 (198)
T ss_pred c
Confidence 3
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.3e-10 Score=102.26 Aligned_cols=110 Identities=18% Similarity=0.274 Sum_probs=82.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCC-CcEEEEeCCHHHHHHHHHh--hc-------CCCCCeEEEccccCCCCCCCCCee
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGY-EDIVNIDISSVAIDMMKMK--YE-------EIPQLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~-~~v~~vD~s~~~i~~a~~~--~~-------~~~~v~~~~~d~~~~~~~~~~~~D 117 (252)
+++.+|||+|||+|..+..+++++. .+++++|+++++++.++++ +. +.++++++.+|..+.....+++||
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 5567999999999999999998753 6999999999999999984 21 235799999999875323346899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+++..-... .....-....+++.+.+.|+|||.+++..
T Consensus 376 vIi~D~~~~~~--~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 376 VIIVDLPDPSN--PALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEEeCCCCCC--cchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 99997542221 00011123568899999999999998864
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.8e-10 Score=88.57 Aligned_cols=104 Identities=24% Similarity=0.311 Sum_probs=88.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CC-CCeEEEccccCCCCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IP-QLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~~-~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+.++.+|+|.|.|+|.++..++.. | .++++..|+.++..+.|+++++. .. ++++...|+.+.. ..+ .||+|+.
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~-~~~-~vDav~L 169 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGI-DEE-DVDAVFL 169 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccc-ccc-ccCEEEE
Confidence 678999999999999999999975 3 57999999999999999999965 22 4889999998875 333 8999997
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+.++++.+++.++++|+|||.+++..+....
T Consensus 170 ------------Dmp~PW~~le~~~~~Lkpgg~~~~y~P~veQ 200 (256)
T COG2519 170 ------------DLPDPWNVLEHVSDALKPGGVVVVYSPTVEQ 200 (256)
T ss_pred ------------cCCChHHHHHHHHHHhCCCcEEEEEcCCHHH
Confidence 3389999999999999999999887765443
|
|
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.6e-09 Score=77.72 Aligned_cols=119 Identities=23% Similarity=0.306 Sum_probs=98.2
Q ss_pred cchhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC-
Q 025475 35 RYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS- 109 (252)
Q Consensus 35 ~~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~- 109 (252)
+.+.+.+.+.+.+. .+.-|||+|+|+|.++..++++| ...++++|+|++.+....+.+ +.++++++|+.++.
T Consensus 32 sSs~lA~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~---p~~~ii~gda~~l~~ 108 (194)
T COG3963 32 SSSILARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY---PGVNIINGDAFDLRT 108 (194)
T ss_pred CcHHHHHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC---CCccccccchhhHHH
Confidence 33445666666654 45589999999999999999997 558999999999999998887 45678899988764
Q ss_pred ---CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 110 ---FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 110 ---~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+.....||.|++...+-.+ +.....++++.+...|..||.++-.+++
T Consensus 109 ~l~e~~gq~~D~viS~lPll~~-----P~~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 109 TLGEHKGQFFDSVISGLPLLNF-----PMHRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred HHhhcCCCeeeeEEeccccccC-----cHHHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 2556779999999888877 7788899999999999999999988876
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.9e-10 Score=90.44 Aligned_cols=107 Identities=21% Similarity=0.348 Sum_probs=85.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh-c-C--CCCCeEEEccccCCC-CCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY-E-E--IPQLKYLQMDVRDMS-FFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~-~-~--~~~v~~~~~d~~~~~-~~~~~~~D~v~~ 121 (252)
.+.+.+|||.|.|-|..+...+++|..+|+.++.++..++.|.-+- + + ...++++.+|+.+.. .+.+.+||+|+-
T Consensus 132 ~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiH 211 (287)
T COG2521 132 VKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIH 211 (287)
T ss_pred cccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEee
Confidence 3467899999999999999999999879999999999999887653 1 1 126899999998753 378899999998
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
..+ -++....-.-..+.++++|+|++||.++-
T Consensus 212 DPP----RfS~AgeLYseefY~El~RiLkrgGrlFH 243 (287)
T COG2521 212 DPP----RFSLAGELYSEEFYRELYRILKRGGRLFH 243 (287)
T ss_pred CCC----ccchhhhHhHHHHHHHHHHHcCcCCcEEE
Confidence 765 22222334568889999999999999864
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-09 Score=86.78 Aligned_cols=112 Identities=21% Similarity=0.326 Sum_probs=79.1
Q ss_pred HHhhCCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC-------------------------
Q 025475 43 VRKYIPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP------------------------- 96 (252)
Q Consensus 43 ~~~~~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~------------------------- 96 (252)
+.+..-.+..+|||||..|.++..+++. +...++|+||++..|..|+.++....
T Consensus 52 L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~~~ 131 (288)
T KOG2899|consen 52 LEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQRN 131 (288)
T ss_pred ccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccccc
Confidence 3333345668999999999999999998 56689999999999999999874311
Q ss_pred ------------CCeEEEccc----cCCCCCCCCCeeEEEeccc--hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 97 ------------QLKYLQMDV----RDMSFFEDESFDAVIDKGT--LDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 97 ------------~v~~~~~d~----~~~~~~~~~~~D~v~~~~~--l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
++.++..+. .++..+....||+|+|--+ +-|+ .-+++.+..++++++++|.|||+|++
T Consensus 132 ~a~~a~t~~~p~n~~f~~~n~vle~~dfl~~~~~~fDiIlcLSiTkWIHL---NwgD~GL~~ff~kis~ll~pgGiLvv 207 (288)
T KOG2899|consen 132 EADRAFTTDFPDNVWFQKENYVLESDDFLDMIQPEFDIILCLSITKWIHL---NWGDDGLRRFFRKISSLLHPGGILVV 207 (288)
T ss_pred cccccccccCCcchhcccccEEEecchhhhhccccccEEEEEEeeeeEec---ccccHHHHHHHHHHHHhhCcCcEEEE
Confidence 111111111 0010123467999998654 4454 22457789999999999999999987
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.8e-09 Score=88.59 Aligned_cols=104 Identities=16% Similarity=0.234 Sum_probs=82.0
Q ss_pred CCcEEEEcccCcH----hHHHHHHcC------CCcEEEEeCCHHHHHHHHHhh-------c------------C--C---
Q 025475 50 SSRVLMVGCGNAL----MSEDMVKDG------YEDIVNIDISSVAIDMMKMKY-------E------------E--I--- 95 (252)
Q Consensus 50 ~~~vLD~G~G~G~----~~~~l~~~~------~~~v~~vD~s~~~i~~a~~~~-------~------------~--~--- 95 (252)
..+|+-.||++|. ++..+.+.+ ..+|+|+|+|..+++.|+.-. . . .
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5599999999996 333343432 358999999999999997621 0 0 0
Q ss_pred -------CCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 96 -------PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 96 -------~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|.|.+.|+.+.+ ...+.||+|+|-+++.++ +.+...++++.++..|+|||+|++..
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~-~~~~~fD~IfCRNVLIYF-----d~~~q~~il~~f~~~L~~gG~LflG~ 241 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDS-PFLGKFDLIFCRNVLIYF-----DEETQERILRRFADSLKPGGLLFLGH 241 (268)
T ss_pred EEChHHhcccEEeecCCCCCc-cccCCCCEEEEcceEEee-----CHHHHHHHHHHHHHHhCCCCEEEEcc
Confidence 14778888887765 356679999999999999 88999999999999999999999854
|
|
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-09 Score=86.14 Aligned_cols=103 Identities=23% Similarity=0.364 Sum_probs=77.9
Q ss_pred cEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc--CCCCCeEEEccccCCC-C-CCCCCeeEEEeccchh
Q 025475 52 RVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS-F-FEDESFDAVIDKGTLD 126 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~--~~~~v~~~~~d~~~~~-~-~~~~~~D~v~~~~~l~ 126 (252)
.+||+|||.|.++..++... ...++|+|+....+..+..+.. ...|+.++++|+.... . ++++++|.|..+++
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP-- 97 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYINFP-- 97 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEES---
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEeCC--
Confidence 89999999999999999874 6699999999999988887774 4569999999998732 1 45689999997543
Q ss_pred hhcCCCCChhh--------HHHHHHHHHHcccCCcEEEEEEcC
Q 025475 127 SLMCGTNAPIS--------ASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.|.+.. ...++..+.++|++||.+.+.+-.
T Consensus 98 -----DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~TD~ 135 (195)
T PF02390_consen 98 -----DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFATDV 135 (195)
T ss_dssp ---------SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEES-
T ss_pred -----CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEeCC
Confidence 222222 278999999999999999998844
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.05 E-value=6.6e-10 Score=92.70 Aligned_cols=103 Identities=22% Similarity=0.315 Sum_probs=81.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
=.+..|||+|||+|.++.+.++.|..+|++||-|.-+ +.|++.+..+. .++++++.+.+.. +|.++.|+|++-+.
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~-LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIE-LPVEKVDIIVSEWM 136 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEe-cCccceeEEeehhh
Confidence 3677999999999999999999998899999987654 88888775432 4899999999986 77789999999876
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
=++++++ ..+..++-.--+.|+|||.++
T Consensus 137 Gy~Ll~E----sMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYE----SMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHh----hhhhhhhhhhhhccCCCceEc
Confidence 5554221 455666666679999999854
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.04 E-value=2e-09 Score=102.98 Aligned_cols=119 Identities=15% Similarity=0.182 Sum_probs=86.7
Q ss_pred CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC------------------CCCeEEEccccCCCC
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI------------------PQLKYLQMDVRDMSF 110 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~------------------~~v~~~~~d~~~~~~ 110 (252)
+.+|||+|||+|.++..++... ..+++++|+|+.+++.|+++...+ .+++++++|+.+...
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~ 198 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCR 198 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhcc
Confidence 3589999999999999999874 468999999999999999988531 258999999987531
Q ss_pred CCCCCeeEEEeccchhhh---------------------------cC----CCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 111 FEDESFDAVIDKGTLDSL---------------------------MC----GTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~---------------------------~~----~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
....+||+||+|.++-.- +. +..+....++++.++.++|+|||.+++-.
T Consensus 199 ~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i~~~a~~~L~pgG~l~lEi 278 (1082)
T PLN02672 199 DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFGLGLIARAVEEGISVIKPMGIMIFNM 278 (1082)
T ss_pred ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 112369999999874310 00 12333445788899999999999887644
Q ss_pred cCChhhhhh
Q 025475 160 YGDPKARMI 168 (252)
Q Consensus 160 ~~~~~~~~~ 168 (252)
-........
T Consensus 279 G~~q~~~v~ 287 (1082)
T PLN02672 279 GGRPGQAVC 287 (1082)
T ss_pred CccHHHHHH
Confidence 334444443
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.9e-09 Score=91.61 Aligned_cols=100 Identities=16% Similarity=0.192 Sum_probs=73.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++.+|||+|||+|.++..++..+ .+|+|+|+++.+++.|+++.+. ..+++++++|+.++.....++||+|+++.+-.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~~-~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr~ 251 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATPG-MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVNPPRR 251 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEECCCCC
Confidence 45799999999999999999986 5999999999999999998854 34799999999876412335799999875521
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
-+ ...+++. ...++|++.++++.
T Consensus 252 G~---------~~~~~~~-l~~~~~~~ivyvsc 274 (315)
T PRK03522 252 GI---------GKELCDY-LSQMAPRFILYSSC 274 (315)
T ss_pred Cc---------cHHHHHH-HHHcCCCeEEEEEC
Confidence 11 1222232 33357777776654
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.02 E-value=3.2e-09 Score=94.34 Aligned_cols=109 Identities=13% Similarity=0.259 Sum_probs=80.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCC-C--CCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMS-F--FEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~-~--~~~~~~D~v~~~ 122 (252)
.++.+|||+|||+|.++..++..+ .+++++|+|+.|++.|+++... ..+++++++|+.+.. . +.+++||+|+++
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~-~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQA-AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 356799999999999999999885 5899999999999999998753 347999999987532 1 334679999987
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
.+..- ....++.+.+ +++++.++++. .|....+.+
T Consensus 375 PPr~g----------~~~~~~~l~~-~~~~~ivyvSC--np~tlaRDl 409 (443)
T PRK13168 375 PPRAG----------AAEVMQALAK-LGPKRIVYVSC--NPATLARDA 409 (443)
T ss_pred cCCcC----------hHHHHHHHHh-cCCCeEEEEEe--ChHHhhccH
Confidence 65332 2344555555 58888888865 344434333
|
|
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.4e-09 Score=87.29 Aligned_cols=125 Identities=20% Similarity=0.226 Sum_probs=96.5
Q ss_pred hhhHHHHHh--hCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEc-cccCCCCC
Q 025475 37 SALRPFVRK--YIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQM-DVRDMSFF 111 (252)
Q Consensus 37 ~~l~~~~~~--~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~-d~~~~~~~ 111 (252)
+.+++.+.. .+.+|..|||.-||||.+...+...|. +++|+|++..|++.++.|++..+ ...+... |+.+++ +
T Consensus 183 P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~-~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp-l 260 (347)
T COG1041 183 PRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGA-RVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP-L 260 (347)
T ss_pred HHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCc-eEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC-C
Confidence 334444433 356888999999999999999999886 99999999999999999997653 4545555 999998 8
Q ss_pred CCCCeeEEEeccchhhhcCCCC--ChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 112 EDESFDAVIDKGTLDSLMCGTN--APISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++.++|.|++..++---..-.. -.+-..++++.+.++|++||++++.....+
T Consensus 261 ~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p~~~ 314 (347)
T COG1041 261 RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAPRDP 314 (347)
T ss_pred CCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecCCcc
Confidence 8878999999887543210111 134578899999999999999998876333
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.4e-09 Score=90.07 Aligned_cols=129 Identities=22% Similarity=0.257 Sum_probs=89.9
Q ss_pred eccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEccccCC
Q 025475 33 YQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDM 108 (252)
Q Consensus 33 ~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d~~~~ 108 (252)
+-.++..+.++... ..+.+|||+-|-||.++...+..|..+|+.||.|..+++++++++.-+ ..+++++.|+.++
T Consensus 108 FlDqR~nR~~v~~~-~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~ 186 (286)
T PF10672_consen 108 FLDQRENRKWVRKY-AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKF 186 (286)
T ss_dssp -GGGHHHHHHHHHH-CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHH
T ss_pred cHHHHhhHHHHHHH-cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHH
Confidence 33345566777665 457899999999999999999988779999999999999999997422 3689999999874
Q ss_pred CC--CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 109 SF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 109 ~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
-. -..++||+|++..+-..- ....-..+..+++..+.++|+|||.|++++++..
T Consensus 187 l~~~~~~~~fD~IIlDPPsF~k-~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~ 242 (286)
T PF10672_consen 187 LKRLKKGGRFDLIILDPPSFAK-SKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSHH 242 (286)
T ss_dssp HHHHHHTT-EEEEEE--SSEES-STCEHHHHHHHHHHHHHHTEEEEEEEEEEE--TT
T ss_pred HHHHhcCCCCCEEEECCCCCCC-CHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcc
Confidence 21 124689999998762211 0001124567788999999999999988876543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=99.01 E-value=4.2e-09 Score=89.57 Aligned_cols=111 Identities=23% Similarity=0.369 Sum_probs=82.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
+.+.+||.+|+|.|..+..+++.. ..+++.||+++.+++.+++.+.. .++++++.+|...+.....++||+|+
T Consensus 102 ~~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi 181 (336)
T PLN02823 102 PNPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVII 181 (336)
T ss_pred CCCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEE
Confidence 455689999999999999998864 56899999999999999998742 36899999999886423456899999
Q ss_pred eccchhhhcCCCCChhhHHHHHH-HHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLG-EVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~-~~~~~L~~gG~l~i~~ 159 (252)
+... .....+.+..-....+++ .+.+.|+|||.+++..
T Consensus 182 ~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 182 GDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred ecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEec
Confidence 8732 110000000012356777 8999999999987653
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.8e-09 Score=84.64 Aligned_cols=102 Identities=20% Similarity=0.241 Sum_probs=82.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEE-ccccCCCC-CCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQ-MDVRDMSF-FEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~-~d~~~~~~-~~~~~~D~v~ 120 (252)
.+..+|||+|.+.|..+.+++.. . ..+++.+|+++++.+.|+++++..+ .+..+. +|..+... ...++||+|+
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 46679999999999999999987 2 5689999999999999999997543 477777 47665431 3468999999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
... ...+...+++.+.++|+|||.+++=.
T Consensus 138 IDa----------dK~~yp~~le~~~~lLr~GGliv~DN 166 (219)
T COG4122 138 IDA----------DKADYPEYLERALPLLRPGGLIVADN 166 (219)
T ss_pred EeC----------ChhhCHHHHHHHHHHhCCCcEEEEee
Confidence 753 44677889999999999999998744
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.6e-09 Score=86.70 Aligned_cols=76 Identities=12% Similarity=0.284 Sum_probs=65.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...++++++++|+.+.+ ++ .+|.|+++.+++
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~L~~~~-~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~-~~--~~d~Vv~NlPy~ 102 (258)
T PRK14896 27 DTDGDPVLEIGPGKGALTDELAKRA-KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVD-LP--EFNKVVSNLPYQ 102 (258)
T ss_pred CCCcCeEEEEeCccCHHHHHHHHhC-CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCC-ch--hceEEEEcCCcc
Confidence 3466799999999999999999985 4899999999999999998865568999999998876 44 489999988865
|
|
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=84.97 Aligned_cols=104 Identities=17% Similarity=0.306 Sum_probs=77.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCC-CC--CCCCeeEEEec
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMS-FF--EDESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~-~~--~~~~~D~v~~~ 122 (252)
.+.++||+.||+|.++...+++|..+|+.||.++.+++..+++++..+ .++++..|..... .. ...+||+|++.
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIflD 121 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFLD 121 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE-
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEEC
Confidence 477999999999999999999998899999999999999999986433 4788888865432 11 46789999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHH--HcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVS--RLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~i~~ 159 (252)
+++..- .....++..+. .+|+++|.+++-.
T Consensus 122 PPY~~~-------~~~~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 122 PPYAKG-------LYYEELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp -STTSC-------HHHHHHHHHHHHTTSEEEEEEEEEEE
T ss_pred CCcccc-------hHHHHHHHHHHHCCCCCCCEEEEEEe
Confidence 887754 22466777776 7899999887654
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.2e-09 Score=84.25 Aligned_cols=101 Identities=17% Similarity=0.247 Sum_probs=80.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCC-----CCCCCeeE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF-----FEDESFDA 118 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~-----~~~~~~D~ 118 (252)
+..+|||+|+++|..+..+++. + .++++.+|+++...+.|++.++.. .+++++.+|..+.-. ...++||+
T Consensus 45 ~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD~ 124 (205)
T PF01596_consen 45 RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFDF 124 (205)
T ss_dssp T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEEE
T ss_pred CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCceeE
Confidence 4569999999999999999986 2 469999999999999999998643 379999999876421 12458999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+... +..+....++.+.++|++||.+++-.
T Consensus 125 VFiDa----------~K~~y~~y~~~~~~ll~~ggvii~DN 155 (205)
T PF01596_consen 125 VFIDA----------DKRNYLEYFEKALPLLRPGGVIIADN 155 (205)
T ss_dssp EEEES----------TGGGHHHHHHHHHHHEEEEEEEEEET
T ss_pred EEEcc----------cccchhhHHHHHhhhccCCeEEEEcc
Confidence 99864 33567788889999999999988743
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=5.2e-09 Score=86.37 Aligned_cols=100 Identities=15% Similarity=0.141 Sum_probs=80.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-CC----CCCCee
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FF----EDESFD 117 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-~~----~~~~~D 117 (252)
.+..+|||+|+++|..+..++.. + .++++++|.+++..+.|+++++.. .+++++.+|+.+.. .+ ..++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 34669999999999999999875 2 457999999999999999999653 37999999987642 11 136899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
+|+... +..+...+++.+.++|++||.+++
T Consensus 197 ~VFIDa----------~K~~Y~~y~e~~l~lL~~GGvIV~ 226 (278)
T PLN02476 197 FAFVDA----------DKRMYQDYFELLLQLVRVGGVIVM 226 (278)
T ss_pred EEEECC----------CHHHHHHHHHHHHHhcCCCcEEEE
Confidence 999763 336778889999999999999876
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-09 Score=81.90 Aligned_cols=107 Identities=23% Similarity=0.316 Sum_probs=74.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEccccCC---CCCCCCCeeE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDM---SFFEDESFDA 118 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~~~---~~~~~~~~D~ 118 (252)
.++.+|||+|||+|..+..++.. +..+|+..|.++ .++.++.+++.+ +++.+...|-.+. ......+||+
T Consensus 44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 46679999999999999999998 666999999999 999999887542 3566666654331 1023468999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|++..+++.- +....+++.+.++|+++|.+++....+
T Consensus 123 IlasDv~Y~~-------~~~~~L~~tl~~ll~~~~~vl~~~~~R 159 (173)
T PF10294_consen 123 ILASDVLYDE-------ELFEPLVRTLKRLLKPNGKVLLAYKRR 159 (173)
T ss_dssp EEEES--S-G-------GGHHHHHHHHHHHBTT-TTEEEEEE-S
T ss_pred EEEecccchH-------HHHHHHHHHHHHHhCCCCEEEEEeCEe
Confidence 9999999977 889999999999999999877766544
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.95 E-value=6.3e-09 Score=81.78 Aligned_cols=103 Identities=11% Similarity=0.056 Sum_probs=75.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCC-C-CC-CCeeEEEec
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF-F-ED-ESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~-~-~~-~~~D~v~~~ 122 (252)
.+.+|||++||+|.++..++.+|..+++++|.++.+++.++++++.. .+++++++|+.+... . .. ..+|+|+..
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~D 128 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYLD 128 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEEC
Confidence 46799999999999999999999779999999999999999987543 257899999965421 1 12 247999988
Q ss_pred cchhhhcCCCCChhhHHHHHHHH--HHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEV--SRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~--~~~L~~gG~l~i~~ 159 (252)
..+..- ....++..+ ..+|+++|.+++-.
T Consensus 129 PPy~~~--------~~~~~l~~l~~~~~l~~~~iiv~E~ 159 (189)
T TIGR00095 129 PPFFNG--------ALQALLELCENNWILEDTVLIVVEE 159 (189)
T ss_pred cCCCCC--------cHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 775422 233334433 35788888776544
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.9e-10 Score=86.19 Aligned_cols=105 Identities=18% Similarity=0.289 Sum_probs=88.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
....++|+|||.|.....+...+..+++-+|.|-.|++.++..-...-.+.....|-+.++ +.+.++|+|+++..+|++
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ld-f~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLD-FKENSVDLIISSLSLHWT 150 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCCCceEEEEEecchhccc-ccccchhhhhhhhhhhhh
Confidence 4458999999999999999999877999999999999998865321113456667777777 899999999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.++...+.+|...|||+|.++.+-++
T Consensus 151 -------NdLPg~m~~ck~~lKPDg~Fiasmlg 176 (325)
T KOG2940|consen 151 -------NDLPGSMIQCKLALKPDGLFIASMLG 176 (325)
T ss_pred -------ccCchHHHHHHHhcCCCccchhHHhc
Confidence 88999999999999999998876544
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-09 Score=90.51 Aligned_cols=109 Identities=12% Similarity=0.163 Sum_probs=80.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++.+|||+|||+|.++..++..+ .+++++|+++.+++.++++.+.. .+++++++|+.+.......+||+|+++.+-.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~~-~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~DPPr~ 311 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGPD-TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVNPPRR 311 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhcC-CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEECCCCC
Confidence 45699999999999999999876 58999999999999999988543 3789999999775311224699999987643
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
-+ ...+++.+.+ ++|++.++++. .|....+.+
T Consensus 312 G~---------~~~~l~~l~~-~~p~~ivyvsc--~p~TlaRDl 343 (374)
T TIGR02085 312 GI---------GKELCDYLSQ-MAPKFILYSSC--NAQTMAKDI 343 (374)
T ss_pred CC---------cHHHHHHHHh-cCCCeEEEEEe--CHHHHHHHH
Confidence 22 2334444443 68888888765 455544444
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.9e-09 Score=85.86 Aligned_cols=103 Identities=17% Similarity=0.224 Sum_probs=87.8
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
-...+|+|+|.|..+..+... +.++-+++.+...+-.+...+. +.|+.+.+|+++-. | +-|+|++.+++||+
T Consensus 178 v~~avDvGgGiG~v~k~ll~~-fp~ik~infdlp~v~~~a~~~~--~gV~~v~gdmfq~~--P--~~daI~mkWiLhdw- 249 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSK-YPHIKGINFDLPFVLAAAPYLA--PGVEHVAGDMFQDT--P--KGDAIWMKWILHDW- 249 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHh-CCCCceeecCHHHHHhhhhhhc--CCcceecccccccC--C--CcCeEEEEeecccC-
Confidence 358999999999999999995 5589999999888887777764 34888888886543 2 45699999999999
Q ss_pred CCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 130 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
++++..++|++|+..|+|||.+++.+..-|.
T Consensus 250 ----tDedcvkiLknC~~sL~~~GkIiv~E~V~p~ 280 (342)
T KOG3178|consen 250 ----TDEDCVKILKNCKKSLPPGGKIIVVENVTPE 280 (342)
T ss_pred ----ChHHHHHHHHHHHHhCCCCCEEEEEeccCCC
Confidence 9999999999999999999999999975554
|
|
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.92 E-value=6.7e-09 Score=86.41 Aligned_cols=76 Identities=13% Similarity=0.243 Sum_probs=63.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+++.+. +++++|+++.|++.+++++.. ++++++++|+.+++ +++-..|.|++|.+++
T Consensus 41 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~avE~d~~~~~~~~~~~~~-~~v~~i~~D~~~~~-~~~~~~~~vv~NlPY~ 116 (272)
T PRK00274 41 QPGDNVLEIGPGLGALTEPLLERAA-KVTAVEIDRDLAPILAETFAE-DNLTIIEGDALKVD-LSELQPLKVVANLPYN 116 (272)
T ss_pred CCcCeEEEeCCCccHHHHHHHHhCC-cEEEEECCHHHHHHHHHhhcc-CceEEEEChhhcCC-HHHcCcceEEEeCCcc
Confidence 4667999999999999999999865 999999999999999988754 68999999999876 4432258899887654
|
|
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=98.90 E-value=1e-08 Score=83.41 Aligned_cols=105 Identities=20% Similarity=0.257 Sum_probs=80.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC--CCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS--FFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~--~~~~~~~D~v 119 (252)
+.||.+|||.|.|+|.++..++.. + .++|+..|+.++..+.|+++++.. .++++...|+.+-. ...+..+|.|
T Consensus 38 i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav 117 (247)
T PF08704_consen 38 IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDEELESDFDAV 117 (247)
T ss_dssp --TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccccccCcccEE
Confidence 679999999999999999999976 3 669999999999999999998642 37899999997533 1124679999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcc-cCCcEEEEEEcCCh
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLL-KPGGIYMLITYGDP 163 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~~gG~l~i~~~~~~ 163 (252)
+.. .+++..++..+.+.| ++||.+++..++-.
T Consensus 118 fLD------------lp~Pw~~i~~~~~~L~~~gG~i~~fsP~ie 150 (247)
T PF08704_consen 118 FLD------------LPDPWEAIPHAKRALKKPGGRICCFSPCIE 150 (247)
T ss_dssp EEE------------SSSGGGGHHHHHHHE-EEEEEEEEEESSHH
T ss_pred EEe------------CCCHHHHHHHHHHHHhcCCceEEEECCCHH
Confidence 974 377888999999999 89999988776533
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.2e-08 Score=83.23 Aligned_cols=145 Identities=20% Similarity=0.214 Sum_probs=89.1
Q ss_pred CCChhhHHHHhccCCCcee---eec-cchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHH
Q 025475 13 YGDALYWNARYVQEGGSFD---WYQ-RYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM 88 (252)
Q Consensus 13 ~~~~~~w~~~y~~~~~~~~---~~~-~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a 88 (252)
++..+|.+..|........ ... ....+.+.+...-.++.++||+|||+-.....-+..-..+++..|+++..++..
T Consensus 16 FdP~~Yl~~yY~~~~~~~~~~~~~~~~L~~l~~~f~~g~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el 95 (256)
T PF01234_consen 16 FDPRAYLDTYYSFPSGDDAEDEILLFFLKNLHETFSSGGVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREEL 95 (256)
T ss_dssp B-HHHHHHHHHSTSSS-CHHHHHHHHHHHHHHHHHHTSSS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHH
T ss_pred CCHHHHHHHhcCCCccCcccchhHHHHHHHHHHHhCccCcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHH
Confidence 4445666667754433321 110 011222223222234558999999985543333333366899999999998877
Q ss_pred HHhhcCCC------------------------------CC-eEEEccccCCCCCCC-----CCeeEEEeccchhhhcCCC
Q 025475 89 KMKYEEIP------------------------------QL-KYLQMDVRDMSFFED-----ESFDAVIDKGTLDSLMCGT 132 (252)
Q Consensus 89 ~~~~~~~~------------------------------~v-~~~~~d~~~~~~~~~-----~~~D~v~~~~~l~~~~~~~ 132 (252)
++.+++.. .| .++.+|+.+.+++.. .+||+|++..+++.. .
T Consensus 96 ~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a---~ 172 (256)
T PF01234_consen 96 EKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRRAVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESA---C 172 (256)
T ss_dssp HHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHHHEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH----
T ss_pred HHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHHhhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHH---c
Confidence 76543210 12 377889987654433 359999999999986 4
Q ss_pred CChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 133 NAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 133 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+.+...++++++.++|||||.|++...
T Consensus 173 ~d~~~y~~al~ni~~lLkpGG~Lil~~~ 200 (256)
T PF01234_consen 173 KDLDEYRRALRNISSLLKPGGHLILAGV 200 (256)
T ss_dssp SSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCcEEEEEEE
Confidence 5668899999999999999999999774
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.9e-09 Score=81.80 Aligned_cols=103 Identities=23% Similarity=0.316 Sum_probs=73.5
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~ 115 (252)
+..+...+.++.+|+|+.||.|.++..++..+ ...|+++|++|.+++.++++...+ ..+..+++|..++. ....
T Consensus 92 r~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~--~~~~ 169 (200)
T PF02475_consen 92 RRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFL--PEGK 169 (200)
T ss_dssp HHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-----TT-
T ss_pred HHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhc--Cccc
Confidence 44555667889999999999999999999843 558999999999999999988532 36889999999986 3778
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEE
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 155 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l 155 (252)
+|.|+++.+- ....++..+.+++++||.+
T Consensus 170 ~drvim~lp~-----------~~~~fl~~~~~~~~~~g~i 198 (200)
T PF02475_consen 170 FDRVIMNLPE-----------SSLEFLDAALSLLKEGGII 198 (200)
T ss_dssp EEEEEE--TS-----------SGGGGHHHHHHHEEEEEEE
T ss_pred cCEEEECChH-----------HHHHHHHHHHHHhcCCcEE
Confidence 9999987542 2234677788899999876
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-08 Score=82.35 Aligned_cols=103 Identities=24% Similarity=0.296 Sum_probs=82.2
Q ss_pred CcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC--CCCCCeeEEEeccch
Q 025475 51 SRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF--FEDESFDAVIDKGTL 125 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~~l 125 (252)
..+||||||.|.+...++... ...++|||+....+..|...+.. .+|+.+++.|+..+.+ .++++.|-|..++
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-- 127 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYINF-- 127 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEEC--
Confidence 489999999999999999984 66899999999988888877743 3489999999977532 3555999999743
Q ss_pred hhhcCCCCChhhH--------HHHHHHHHHcccCCcEEEEEEc
Q 025475 126 DSLMCGTNAPISA--------SQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 126 ~~~~~~~~~~~~~--------~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..|-+..+ ..+++.+.++|++||.+.+.+-
T Consensus 128 -----PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aTD 165 (227)
T COG0220 128 -----PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFATD 165 (227)
T ss_pred -----CCCCCCccccccccCCHHHHHHHHHHccCCCEEEEEec
Confidence 33333333 6789999999999999999873
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=98.88 E-value=4.1e-08 Score=80.88 Aligned_cols=75 Identities=16% Similarity=0.287 Sum_probs=62.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCee---EEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFD---AVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D---~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++.+. .++++|+++.+++.++.++...++++++++|+.+.+ +. .+| +|+++.+
T Consensus 28 ~~~~~VLEiG~G~G~lt~~L~~~~~-~v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~-~~--~~d~~~~vvsNlP 103 (253)
T TIGR00755 28 LEGDVVLEIGPGLGALTEPLLKRAK-KVTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVD-LP--DFPKQLKVVSNLP 103 (253)
T ss_pred CCcCEEEEeCCCCCHHHHHHHHhCC-cEEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCC-hh--HcCCcceEEEcCC
Confidence 4567999999999999999999864 799999999999999988755568999999998876 43 466 7887766
Q ss_pred hh
Q 025475 125 LD 126 (252)
Q Consensus 125 l~ 126 (252)
++
T Consensus 104 y~ 105 (253)
T TIGR00755 104 YN 105 (253)
T ss_pred hh
Confidence 44
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.6e-08 Score=79.54 Aligned_cols=113 Identities=17% Similarity=0.229 Sum_probs=82.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEcccc----CCCCCCCCCeeEEE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVR----DMSFFEDESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~----~~~~~~~~~~D~v~ 120 (252)
.+..+||+|||+|..+..++.. +.+.++++|.|+.++..|.+++... +.+.++..+++ +..+...+..|+++
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dllv 227 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLLV 227 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEEe
Confidence 4458999999999999999876 4679999999999999999998542 35666644443 22224568899999
Q ss_pred eccchhhh--c-----------------CCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 121 DKGTLDSL--M-----------------CGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 121 ~~~~l~~~--~-----------------~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|..+-.- + .+.........++.-+.|.|++||.+.+-...
T Consensus 228 sNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~ 287 (328)
T KOG2904|consen 228 SNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVE 287 (328)
T ss_pred cCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEecc
Confidence 99875422 0 01123334466777788999999999886653
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1e-08 Score=90.53 Aligned_cols=111 Identities=18% Similarity=0.302 Sum_probs=76.4
Q ss_pred hHHHHHhhCCC------CCcEEEEcccCcHhHHHHHHcC-----CCcEEEEeCCHHHHHHHHHhhc--C-CCCCeEEEcc
Q 025475 39 LRPFVRKYIPT------SSRVLMVGCGNALMSEDMVKDG-----YEDIVNIDISSVAIDMMKMKYE--E-IPQLKYLQMD 104 (252)
Q Consensus 39 l~~~~~~~~~~------~~~vLD~G~G~G~~~~~l~~~~-----~~~v~~vD~s~~~i~~a~~~~~--~-~~~v~~~~~d 104 (252)
+...+...... +..|||+|||+|.++...++.+ ..+|++||-++.++...+.+.+ + .+.|+++.+|
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d 249 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGD 249 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 44445554332 4689999999999998887764 5699999999998887766532 2 2479999999
Q ss_pred ccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 105 VRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 105 ~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
++++. . ..++|+||+=.. ..++ ..+.....+....+.|||||.++
T Consensus 250 ~r~v~-l-pekvDIIVSElL-Gsfg----~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 250 MREVE-L-PEKVDIIVSELL-GSFG----DNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp TTTSC-H-SS-EEEEEE----BTTB----TTTSHHHHHHHGGGGEEEEEEEE
T ss_pred ccCCC-C-CCceeEEEEecc-CCcc----ccccCHHHHHHHHhhcCCCCEEe
Confidence 99996 3 348999998543 2221 22455567888899999999854
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=6e-08 Score=71.06 Aligned_cols=106 Identities=13% Similarity=0.254 Sum_probs=75.7
Q ss_pred hHHHHHhhCC--CCCcEEEEcccCcH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCC
Q 025475 39 LRPFVRKYIP--TSSRVLMVGCGNAL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 39 l~~~~~~~~~--~~~~vLD~G~G~G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~ 115 (252)
+.+++...++ ++.+++|+|||+|. ++..+.+.|. +|+++|+++.+++.++.+ .+++++.|+++...-.-..
T Consensus 4 i~~~l~~~~~~~~~~kileIG~GfG~~vA~~L~~~G~-~ViaIDi~~~aV~~a~~~-----~~~~v~dDlf~p~~~~y~~ 77 (134)
T PRK04148 4 IAEFIAENYEKGKNKKIVELGIGFYFKVAKKLKESGF-DVIVIDINEKAVEKAKKL-----GLNAFVDDLFNPNLEIYKN 77 (134)
T ss_pred HHHHHHHhcccccCCEEEEEEecCCHHHHHHHHHCCC-EEEEEECCHHHHHHHHHh-----CCeEEECcCCCCCHHHHhc
Confidence 4445555443 34689999999996 8888888876 999999999999998876 3689999999876222356
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+|+|.+.. ++.+++..+.++.+-+ |.-+++.....
T Consensus 78 a~liysir----------pp~el~~~~~~la~~~--~~~~~i~~l~~ 112 (134)
T PRK04148 78 AKLIYSIR----------PPRDLQPFILELAKKI--NVPLIIKPLSG 112 (134)
T ss_pred CCEEEEeC----------CCHHHHHHHHHHHHHc--CCCEEEEcCCC
Confidence 89999743 4455555555555533 45676666543
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.8e-08 Score=86.16 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=86.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||.|.-+..++.. +.+.++++|+++.-++.+++++... .++.+...|...+.....+.||.|++.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILvD 190 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILLD 190 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEEc
Confidence 357789999999999999999886 2458999999999999999988654 367888888876642334579999977
Q ss_pred cchhhhcCCCCChh---------------hHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 123 GTLDSLMCGTNAPI---------------SASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 123 ~~l~~~~~~~~~~~---------------~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..+.-....-.+++ ...++|..+.++|||||+|+.++++
T Consensus 191 aPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 191 APCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred CCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 65432211111111 1278899999999999999988876
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.83 E-value=2.8e-08 Score=82.33 Aligned_cols=105 Identities=23% Similarity=0.348 Sum_probs=82.8
Q ss_pred CcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 51 SRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.+||-+|.|.|..++.++++. ..+++.||+++..++.+++.+.. .++++++..|..++..-...+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 599999999999999999996 66999999999999999998842 36889999999887422334799999864
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
+=. . +....-.-..+++.++++|+++|.++..
T Consensus 158 tdp-~--gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-V--GPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-C--CcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 311 1 0001112378999999999999999987
|
|
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=80.47 Aligned_cols=101 Identities=17% Similarity=0.266 Sum_probs=64.6
Q ss_pred hHHHHHhh-C-CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCC-eEEEccccCCC--CC--
Q 025475 39 LRPFVRKY-I-PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQL-KYLQMDVRDMS--FF-- 111 (252)
Q Consensus 39 l~~~~~~~-~-~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v-~~~~~d~~~~~--~~-- 111 (252)
+..++... + .++.+|||+|||+|.++..+++.|..+++++|+++.|+....+. .+++ .+...|+.... .+
T Consensus 63 L~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~---~~~v~~~~~~ni~~~~~~~~~~ 139 (228)
T TIGR00478 63 LKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQ---DERVKVLERTNIRYVTPADIFP 139 (228)
T ss_pred HHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhc---CCCeeEeecCCcccCCHhHcCC
Confidence 34444443 1 25668999999999999999999877999999999877652222 1222 23344444321 01
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
.-..+|+++++ +...+..+.++|++ |.+++.
T Consensus 140 d~~~~DvsfiS---------------~~~~l~~i~~~l~~-~~~~~L 170 (228)
T TIGR00478 140 DFATFDVSFIS---------------LISILPELDLLLNP-NDLTLL 170 (228)
T ss_pred CceeeeEEEee---------------hHhHHHHHHHHhCc-CeEEEE
Confidence 11256666643 23357888899999 776553
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.2e-08 Score=80.65 Aligned_cols=99 Identities=10% Similarity=0.089 Sum_probs=79.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-CC-----CCCCee
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FF-----EDESFD 117 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-~~-----~~~~~D 117 (252)
+..+|||+|+++|..+..++.. + .++++.+|.+++..+.|+..++.. .+|+++.+++.+.. .+ ..++||
T Consensus 79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD 158 (247)
T PLN02589 79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTFD 158 (247)
T ss_pred CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCccc
Confidence 4559999999999999999875 2 458999999999999999998643 37999999987642 11 136899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
+|+... +.......++.+.++|++||.+++
T Consensus 159 ~iFiDa----------dK~~Y~~y~~~~l~ll~~GGviv~ 188 (247)
T PLN02589 159 FIFVDA----------DKDNYINYHKRLIDLVKVGGVIGY 188 (247)
T ss_pred EEEecC----------CHHHhHHHHHHHHHhcCCCeEEEE
Confidence 999863 335667888888999999999876
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.3e-08 Score=83.73 Aligned_cols=78 Identities=18% Similarity=0.377 Sum_probs=65.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++.. .++++++++|+.+.+ ++ .||+|+++.
T Consensus 34 ~~~~~~VLEIG~G~G~LT~~Ll~~~-~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~-~~--~~d~VvaNl 109 (294)
T PTZ00338 34 IKPTDTVLEIGPGTGNLTEKLLQLA-KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE-FP--YFDVCVANV 109 (294)
T ss_pred CCCcCEEEEecCchHHHHHHHHHhC-CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-cc--ccCEEEecC
Confidence 4567799999999999999999885 4899999999999999998753 357999999998765 33 689999987
Q ss_pred chhhh
Q 025475 124 TLDSL 128 (252)
Q Consensus 124 ~l~~~ 128 (252)
+++-.
T Consensus 110 PY~Is 114 (294)
T PTZ00338 110 PYQIS 114 (294)
T ss_pred CcccC
Confidence 76643
|
|
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.1e-08 Score=77.16 Aligned_cols=110 Identities=24% Similarity=0.326 Sum_probs=76.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCc---------EEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCC
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YED---------IVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFED 113 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~---------v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~ 113 (252)
..++..++|..||+|.+....+..+ ... ++|+|+++.+++.++.++...+ .+.+.+.|+.+++ +.+
T Consensus 26 ~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~-~~~ 104 (179)
T PF01170_consen 26 WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP-LPD 104 (179)
T ss_dssp --TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG-GTT
T ss_pred CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc-ccc
Confidence 3567799999999999999887764 223 8899999999999999986432 5789999999998 777
Q ss_pred CCeeEEEeccchhhhcCCC--CChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 114 ESFDAVIDKGTLDSLMCGT--NAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~--~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+++|+|+++.++.-- .+. ....-..++++++.++|++ ..+++..
T Consensus 105 ~~~d~IvtnPPyG~r-~~~~~~~~~ly~~~~~~~~~~l~~-~~v~l~~ 150 (179)
T PF01170_consen 105 GSVDAIVTNPPYGRR-LGSKKDLEKLYRQFLRELKRVLKP-RAVFLTT 150 (179)
T ss_dssp SBSCEEEEE--STTS-HCHHHHHHHHHHHHHHHHHCHSTT-CEEEEEE
T ss_pred CCCCEEEECcchhhh-ccCHHHHHHHHHHHHHHHHHHCCC-CEEEEEE
Confidence 899999999876542 010 1122346678888999988 4444444
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.6e-08 Score=87.45 Aligned_cols=110 Identities=16% Similarity=0.270 Sum_probs=78.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCC-C--CCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMS-F--FEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~-~--~~~~~~D~v~~~ 122 (252)
.++.+|||+|||+|.++..+++.. .+++++|+++.+++.|++++.. ..+++++++|+.+.. . ....+||+|+++
T Consensus 291 ~~~~~vLDl~cG~G~~sl~la~~~-~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 291 QGEELVVDAYCGVGTFTLPLAKQA-KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQPWAGQIPDVLLLD 369 (431)
T ss_pred CCCCEEEEcCCCcCHHHHHHHHhC-CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHHhcCCCCCEEEEC
Confidence 355799999999999999999874 4899999999999999998753 347999999987631 1 234579999986
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
.+-.- ....+++.+.+ +++++.++++. .|....+.+
T Consensus 370 PPr~G---------~~~~~l~~l~~-l~~~~ivyvsc--~p~tlard~ 405 (431)
T TIGR00479 370 PPRKG---------CAAEVLRTIIE-LKPERIVYVSC--NPATLARDL 405 (431)
T ss_pred cCCCC---------CCHHHHHHHHh-cCCCEEEEEcC--CHHHHHHHH
Confidence 54211 12445555544 78888777653 354443333
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=7.1e-08 Score=81.45 Aligned_cols=80 Identities=19% Similarity=0.193 Sum_probs=58.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC----CCeEEE-ccccCCCC---CCCCCeeEE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP----QLKYLQ-MDVRDMSF---FEDESFDAV 119 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~----~v~~~~-~d~~~~~~---~~~~~~D~v 119 (252)
.+.++||||||+|.....++.. ...+++|+|+++.+++.|+++++..+ ++++.. .+..+... ...+.||+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 3469999999999877777654 23489999999999999999986542 466643 33333210 235689999
Q ss_pred Eeccchhhh
Q 025475 120 IDKGTLDSL 128 (252)
Q Consensus 120 ~~~~~l~~~ 128 (252)
+|+.+++.-
T Consensus 194 vcNPPf~~s 202 (321)
T PRK11727 194 LCNPPFHAS 202 (321)
T ss_pred EeCCCCcCc
Confidence 999997753
|
|
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=98.76 E-value=5e-08 Score=79.84 Aligned_cols=110 Identities=21% Similarity=0.354 Sum_probs=81.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc------CCCCCeEEEccccCCCCCCCC-CeeE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSFFEDE-SFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~------~~~~v~~~~~d~~~~~~~~~~-~~D~ 118 (252)
.+.+.+||-+|.|.|..+..++++. ..+++.||+++.+++.|++.+. ..++++++..|...+..-... +||+
T Consensus 74 ~~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDv 153 (246)
T PF01564_consen 74 HPNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDV 153 (246)
T ss_dssp SSST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEE
T ss_pred CCCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccE
Confidence 4567799999999999999999885 5689999999999999999873 246899999999876322333 8999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+....-... ....--...+++.+.+.|++||.+++..
T Consensus 154 Ii~D~~dp~~---~~~~l~t~ef~~~~~~~L~~~Gv~v~~~ 191 (246)
T PF01564_consen 154 IIVDLTDPDG---PAPNLFTREFYQLCKRRLKPDGVLVLQA 191 (246)
T ss_dssp EEEESSSTTS---CGGGGSSHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeCCCCCC---CcccccCHHHHHHHHhhcCCCcEEEEEc
Confidence 9986432111 0011224788999999999999999865
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-08 Score=74.30 Aligned_cols=77 Identities=22% Similarity=0.432 Sum_probs=66.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.++|+|||.|-+.......+...++|+|++|++++.++++..... ++.++++|+.+.. +..+.||.++.+..+.
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle-~~~g~fDtaviNppFG 125 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLE-LKGGIFDTAVINPPFG 125 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchh-ccCCeEeeEEecCCCC
Confidence 577999999999999977766667789999999999999999986644 6799999999987 6678899999998654
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.1e-08 Score=79.91 Aligned_cols=96 Identities=11% Similarity=0.179 Sum_probs=75.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
.+.+.+||-+|.|.|..++.++++.. +|+.||+++.+++.+++.+.. .|+++++.. ..+...++||+|+
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~~~~~~~fDVII 144 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LLDLDIKKYDLII 144 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hhhccCCcCCEEE
Confidence 45667999999999999999999964 999999999999999996632 356777652 2111236899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+... ....+.+.+++.|+|||.++...
T Consensus 145 vDs~------------~~~~fy~~~~~~L~~~Gi~v~Qs 171 (262)
T PRK00536 145 CLQE------------PDIHKIDGLKRMLKEDGVFISVA 171 (262)
T ss_pred EcCC------------CChHHHHHHHHhcCCCcEEEECC
Confidence 8632 22567788999999999998864
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6.3e-08 Score=75.20 Aligned_cols=110 Identities=19% Similarity=0.276 Sum_probs=84.8
Q ss_pred chhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHc-C--CCcEEEEeCCHHHHHHHHHhhcC------------CCCCeE
Q 025475 36 YSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD-G--YEDIVNIDISSVAIDMMKMKYEE------------IPQLKY 100 (252)
Q Consensus 36 ~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~-~--~~~v~~vD~s~~~i~~a~~~~~~------------~~~v~~ 100 (252)
+..+.+.|...+.|+.+.||+|+|+|.++..++.. + ....+|+|.-++.++.+++++.. .+++.+
T Consensus 69 ha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 69 HATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 35566777778899999999999999999999855 3 22449999999999999998732 236788
Q ss_pred EEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 101 LQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 101 ~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.+|..... ....+||.|.+.. ...+..+++...|++||.+++..
T Consensus 149 vvGDgr~g~-~e~a~YDaIhvGA-------------aa~~~pq~l~dqL~~gGrllip~ 193 (237)
T KOG1661|consen 149 VVGDGRKGY-AEQAPYDAIHVGA-------------AASELPQELLDQLKPGGRLLIPV 193 (237)
T ss_pred EeCCccccC-CccCCcceEEEcc-------------CccccHHHHHHhhccCCeEEEee
Confidence 999998875 4667899999752 22334556667799999998844
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.73 E-value=8.9e-08 Score=73.95 Aligned_cols=105 Identities=18% Similarity=0.213 Sum_probs=79.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCC--CCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFED--ESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~--~~~D~v~~~~ 123 (252)
.+.++||+-+|+|.++...+++|...++.||.+..++...+++.+.. .+++++..|......... ++||+|++..
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflDP 122 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLDP 122 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeCC
Confidence 36799999999999999999999889999999999999999998543 368888888875421122 2599999998
Q ss_pred chhhhcCCCCChhhHHHHHHH--HHHcccCCcEEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGE--VSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~--~~~~L~~gG~l~i~~ 159 (252)
+++.= .-+....+.. -..+|+|+|.+++-.
T Consensus 123 Py~~~------l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 123 PYAKG------LLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCccc------hhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 87721 1222333333 457899999988744
|
|
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-07 Score=75.50 Aligned_cols=106 Identities=19% Similarity=0.281 Sum_probs=86.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC---CCcEEEEeCCHHHHHHHHHhhcC--CCCC-eEEEccccCCCCCC--CCCeeEEE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG---YEDIVNIDISSVAIDMMKMKYEE--IPQL-KYLQMDVRDMSFFE--DESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~---~~~v~~vD~s~~~i~~a~~~~~~--~~~v-~~~~~d~~~~~~~~--~~~~D~v~ 120 (252)
.+.+|||+.||.|......+... ...+...|+|+..++.+++.++. ..++ ++.++|+++...+. ....++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 44599999999999988888763 35899999999999999998865 3455 99999998864322 34579999
Q ss_pred eccchhhhcCCCCChh-hHHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPI-SASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.++.++.+ ++. .....+.-+.+++.|||+++.+.
T Consensus 215 VsGL~ElF-----~Dn~lv~~sl~gl~~al~pgG~lIyTg 249 (311)
T PF12147_consen 215 VSGLYELF-----PDNDLVRRSLAGLARALEPGGYLIYTG 249 (311)
T ss_pred EecchhhC-----CcHHHHHHHHHHHHHHhCCCcEEEEcC
Confidence 99999988 443 45667999999999999998765
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.4e-07 Score=76.77 Aligned_cols=95 Identities=15% Similarity=0.252 Sum_probs=75.3
Q ss_pred eeeccchhhHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC
Q 025475 31 DWYQRYSALRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS 109 (252)
Q Consensus 31 ~~~~~~~~l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~ 109 (252)
.|+.....+..++... +.++..|||||+|.|.++..+++.+. +|+++|+++.++...++.....++++++.+|+...+
T Consensus 11 nFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~-~v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d 89 (259)
T COG0030 11 NFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAA-RVTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFD 89 (259)
T ss_pred ccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEEeCHHHHHHHHHhcccccceEEEeCchhcCc
Confidence 3444444455555443 44567999999999999999999965 799999999999999999876678999999999887
Q ss_pred CCCCC-CeeEEEeccchhh
Q 025475 110 FFEDE-SFDAVIDKGTLDS 127 (252)
Q Consensus 110 ~~~~~-~~D~v~~~~~l~~ 127 (252)
++.- .++.|++|-+++-
T Consensus 90 -~~~l~~~~~vVaNlPY~I 107 (259)
T COG0030 90 -FPSLAQPYKVVANLPYNI 107 (259)
T ss_pred -chhhcCCCEEEEcCCCcc
Confidence 5432 6889999887653
|
|
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=8e-08 Score=83.38 Aligned_cols=98 Identities=21% Similarity=0.269 Sum_probs=76.3
Q ss_pred CCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 50 SSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.+|||++||+|..+..++.. +..+|+++|+++.+++.++++++. ..++++.+.|+..+. .....||+|+++..
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l-~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALL-HEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHH-hhcCCCCEEEECCC--
Confidence 358999999999999999775 445899999999999999998843 335678889987653 11457999998642
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.....++..+.+.+++||.++++.
T Consensus 135 ---------Gs~~~~l~~al~~~~~~gilyvSA 158 (382)
T PRK04338 135 ---------GSPAPFLDSAIRSVKRGGLLCVTA 158 (382)
T ss_pred ---------CCcHHHHHHHHHHhcCCCEEEEEe
Confidence 233557777677789999999973
|
|
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.5e-07 Score=78.09 Aligned_cols=101 Identities=17% Similarity=0.215 Sum_probs=76.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.+..|||+|||+|.++...+..|..+|++|+-| +|.+.|+...+.+ .+|.++.+.+++.. + .++.|++++-..-
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiEdie-L-PEk~DviISEPMG 253 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIEDIE-L-PEKVDVIISEPMG 253 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCcccccc-C-chhccEEEeccch
Confidence 566899999999999999999998899999974 5888888887653 37889999999886 4 4579999986542
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
.-+ . +...+.. .-.+++.|+|.|.++=
T Consensus 254 ~mL-~---NERMLEs-Yl~Ark~l~P~GkMfP 280 (517)
T KOG1500|consen 254 YML-V---NERMLES-YLHARKWLKPNGKMFP 280 (517)
T ss_pred hhh-h---hHHHHHH-HHHHHhhcCCCCcccC
Confidence 222 1 2233333 3345699999998753
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.1e-07 Score=78.70 Aligned_cols=112 Identities=24% Similarity=0.239 Sum_probs=90.4
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCe
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~ 116 (252)
+..+......|.+|+|+-||.|.++..++..|..+|+++|++|.+++.+++++.-+ +.+..+++|..+.. ...+.+
T Consensus 179 R~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~-~~~~~a 257 (341)
T COG2520 179 RARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVA-PELGVA 257 (341)
T ss_pred HHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhh-hccccC
Confidence 44455666779999999999999999999998656999999999999999998532 24889999999986 333789
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|-|+++.. ....+++..+.+.+++||.+-..+....
T Consensus 258 DrIim~~p-----------~~a~~fl~~A~~~~k~~g~iHyy~~~~e 293 (341)
T COG2520 258 DRIIMGLP-----------KSAHEFLPLALELLKDGGIIHYYEFVPE 293 (341)
T ss_pred CEEEeCCC-----------CcchhhHHHHHHHhhcCcEEEEEeccch
Confidence 99998754 4445677788888899999887765543
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=98.64 E-value=7e-07 Score=75.46 Aligned_cols=114 Identities=14% Similarity=0.195 Sum_probs=85.0
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhhc--CCCCCeE--EEccccCCCC-
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKYE--EIPQLKY--LQMDVRDMSF- 110 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~----~-~~~v~~vD~s~~~i~~a~~~~~--~~~~v~~--~~~d~~~~~~- 110 (252)
..|...++++..++|+|||+|.-+..+++. + ...++++|+|.++++.+.+++. ..+.+++ +++|..+...
T Consensus 68 ~~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~ 147 (319)
T TIGR03439 68 SDIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAW 147 (319)
T ss_pred HHHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhh
Confidence 345566778889999999999987776654 2 3479999999999999999887 3455554 7888866421
Q ss_pred C----CCCCeeEEEecc-chhhhcCCCCChhhHHHHHHHHHH-cccCCcEEEEEE
Q 025475 111 F----EDESFDAVIDKG-TLDSLMCGTNAPISASQMLGEVSR-LLKPGGIYMLIT 159 (252)
Q Consensus 111 ~----~~~~~D~v~~~~-~l~~~~~~~~~~~~~~~~l~~~~~-~L~~gG~l~i~~ 159 (252)
+ ......+++..+ ++..+ .++....+|+++.+ .|+|||.+++..
T Consensus 148 l~~~~~~~~~r~~~flGSsiGNf-----~~~ea~~fL~~~~~~~l~~~d~lLiG~ 197 (319)
T TIGR03439 148 LKRPENRSRPTTILWLGSSIGNF-----SRPEAAAFLAGFLATALSPSDSFLIGL 197 (319)
T ss_pred cccccccCCccEEEEeCccccCC-----CHHHHHHHHHHHHHhhCCCCCEEEEec
Confidence 1 122356666554 67777 77888999999999 999999988743
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.3e-07 Score=76.21 Aligned_cols=108 Identities=18% Similarity=0.213 Sum_probs=77.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEE--Ecc-ccCCCCCCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYL--QMD-VRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~--~~d-~~~~~~~~~~~~D~v~~~~ 123 (252)
.+.+|||+|||+|..+..+.+. ...+++++|.|+.|++.++..+...+..... ..+ ..+. ....+.|+|++.+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~DLvi~s~ 110 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDF--LPFPPDDLVIASY 110 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhccc--ccCCCCcEEEEeh
Confidence 3459999999999876665554 2558999999999999999987654322111 111 1111 1222349999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
+|..+ +...+..+++.+.+.+++ .|++++.+.|..
T Consensus 111 ~L~EL-----~~~~r~~lv~~LW~~~~~--~LVlVEpGt~~G 145 (274)
T PF09243_consen 111 VLNEL-----PSAARAELVRSLWNKTAP--VLVLVEPGTPAG 145 (274)
T ss_pred hhhcC-----CchHHHHHHHHHHHhccC--cEEEEcCCChHH
Confidence 98888 447788888888887766 999999887754
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.4e-07 Score=74.12 Aligned_cols=131 Identities=21% Similarity=0.216 Sum_probs=87.8
Q ss_pred CCCCChhhHHHHhccCCCceeeeccchhhHHHHHhhCC------CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHH
Q 025475 11 YNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIP------TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVA 84 (252)
Q Consensus 11 ~~~~~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~------~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~ 84 (252)
+..|..+.|...-...+..-.-..+..-+.+++..... ...++|||||=+....... .+.-+|+.+|+++.
T Consensus 7 ~~~GGl~~YQ~AS~~Gq~~~RGGdSSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~--~~~fdvt~IDLns~- 83 (219)
T PF11968_consen 7 EALGGLEAYQRASKQGQSKDRGGDSSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACST--SGWFDVTRIDLNSQ- 83 (219)
T ss_pred HHccCHHHHHHHHHhcCCCCCCCchhHHHHHHhhhhccccccccccceEEeecccCCCCcccc--cCceeeEEeecCCC-
Confidence 34455555554333322222222233344555544421 2359999999754433322 23447999999773
Q ss_pred HHHHHHhhcCCCCCeEEEccccCCC--CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcE-----EEE
Q 025475 85 IDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGI-----YML 157 (252)
Q Consensus 85 i~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~-----l~i 157 (252)
.-.+.++|+.+.| ..+++.||+|+++.+|.++ |++..+-.+++++++.|+++|. |++
T Consensus 84 ------------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfV----P~p~~RG~Ml~r~~~fL~~~g~~~~~~LFl 147 (219)
T PF11968_consen 84 ------------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFV----PDPKQRGEMLRRAHKFLKPPGLSLFPSLFL 147 (219)
T ss_pred ------------CCCceeeccccCCCCCCcccceeEEEEEEEEeeC----CCHHHHHHHHHHHHHHhCCCCccCcceEEE
Confidence 3467899998876 1246789999999999999 7788999999999999999999 888
Q ss_pred EEc
Q 025475 158 ITY 160 (252)
Q Consensus 158 ~~~ 160 (252)
+.+
T Consensus 148 VlP 150 (219)
T PF11968_consen 148 VLP 150 (219)
T ss_pred EeC
Confidence 764
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.60 E-value=2.1e-07 Score=83.81 Aligned_cols=106 Identities=10% Similarity=0.021 Sum_probs=80.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc--CCCCCeEEEccccCCC-CCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMS-FFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~--~~~~v~~~~~d~~~~~-~~~~~~~D~v~~~~~ 124 (252)
.+..+||+|||.|.++..++... ...++|+|+....+..+.+... +..|+.+++.|+..+. .++++++|.|+++++
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 45689999999999999999884 5689999999988777766653 3458888888775432 157788999997543
Q ss_pred hhhhcCCCCChhhH--------HHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSLMCGTNAPISA--------SQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~~~~~~~~~~--------~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.|.+..+ ..+++.+.++|++||.+.+.+-.
T Consensus 427 -------DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~TD~ 464 (506)
T PRK01544 427 -------DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFASDI 464 (506)
T ss_pred -------CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEcCC
Confidence 3222222 78899999999999999988743
|
|
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.7e-07 Score=74.53 Aligned_cols=76 Identities=18% Similarity=0.373 Sum_probs=65.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+++...|||+|+|||.++..+++.|. +|+++|+++.|+...+++.++.+ ..+++.+|+...+ ++ .||.+|++.
T Consensus 56 ~k~tD~VLEvGPGTGnLT~~lLe~~k-kVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-~P--~fd~cVsNl 131 (315)
T KOG0820|consen 56 LKPTDVVLEVGPGTGNLTVKLLEAGK-KVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-LP--RFDGCVSNL 131 (315)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHhcC-eEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC-Cc--ccceeeccC
Confidence 66778999999999999999999975 99999999999999999997654 6899999998775 33 699999976
Q ss_pred chh
Q 025475 124 TLD 126 (252)
Q Consensus 124 ~l~ 126 (252)
.+.
T Consensus 132 Pyq 134 (315)
T KOG0820|consen 132 PYQ 134 (315)
T ss_pred Ccc
Confidence 544
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.8e-07 Score=79.43 Aligned_cols=105 Identities=11% Similarity=0.184 Sum_probs=71.9
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCC----------C-----C
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFF----------E-----D 113 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~----------~-----~ 113 (252)
.+|||++||+|.++..+++.. .+|+++|+++.+++.+++++.. ..+++++++|+.+...- . .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~-~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 277 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF-RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDLKS 277 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccccc
Confidence 479999999999999888764 5899999999999999998854 33789999998764210 0 1
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
..||+|+...+- . ....++++.+. ++++.++++. .|..-.+.+
T Consensus 278 ~~~d~v~lDPPR--~-------G~~~~~l~~l~---~~~~ivYvsC--~p~tlaRDl 320 (353)
T TIGR02143 278 YNCSTIFVDPPR--A-------GLDPDTCKLVQ---AYERILYISC--NPETLKANL 320 (353)
T ss_pred CCCCEEEECCCC--C-------CCcHHHHHHHH---cCCcEEEEEc--CHHHHHHHH
Confidence 237999986541 1 11234444443 3677777654 344444444
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.57 E-value=3e-08 Score=86.53 Aligned_cols=96 Identities=22% Similarity=0.376 Sum_probs=66.8
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCC-----HHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDIS-----SVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s-----~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+||+|||+|+++..+++++ |+.+-++ +..++.|.++- .+. .+-......+| +++++||+|-|..|+.
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~---V~t~s~a~~d~~~~qvqfaleRG--vpa-~~~~~~s~rLP-fp~~~fDmvHcsrc~i 192 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERN---VTTMSFAPNDEHEAQVQFALERG--VPA-MIGVLGSQRLP-FPSNAFDMVHCSRCLI 192 (506)
T ss_pred EEEeccceeehhHHHHhhCC---ceEEEcccccCCchhhhhhhhcC--cch-hhhhhcccccc-CCccchhhhhcccccc
Confidence 79999999999999999984 4444333 34444444431 111 11122235677 9999999999998876
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.. . +.-..+|-++.|+|+|||+++++..
T Consensus 193 ~W-----~-~~~g~~l~evdRvLRpGGyfv~S~p 220 (506)
T PF03141_consen 193 PW-----H-PNDGFLLFEVDRVLRPGGYFVLSGP 220 (506)
T ss_pred cc-----h-hcccceeehhhhhhccCceEEecCC
Confidence 54 2 2224588999999999999988763
|
; GO: 0008168 methyltransferase activity |
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.5e-07 Score=79.18 Aligned_cols=108 Identities=11% Similarity=0.227 Sum_probs=73.2
Q ss_pred hHHHHHhhCC-CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC-CC--
Q 025475 39 LRPFVRKYIP-TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF-FE-- 112 (252)
Q Consensus 39 l~~~~~~~~~-~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~-~~-- 112 (252)
+...+...+. .+.++||++||+|.++..++.. ..+|+++|+++.+++.+++++.. ..+++++++|+.+... +.
T Consensus 195 l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~-~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~ 273 (362)
T PRK05031 195 MLEWALDATKGSKGDLLELYCGNGNFTLALARN-FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGV 273 (362)
T ss_pred HHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh-CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc
Confidence 3344444443 2357999999999999988776 45899999999999999998743 3478999999876421 10
Q ss_pred ------------CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 113 ------------DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 113 ------------~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..+||+|++..+-. ....++++.+.+ +++.++++.
T Consensus 274 ~~~~~~~~~~~~~~~~D~v~lDPPR~---------G~~~~~l~~l~~---~~~ivyvSC 320 (362)
T PRK05031 274 REFNRLKGIDLKSYNFSTIFVDPPRA---------GLDDETLKLVQA---YERILYISC 320 (362)
T ss_pred ccccccccccccCCCCCEEEECCCCC---------CCcHHHHHHHHc---cCCEEEEEe
Confidence 12589999876521 112344444433 567766654
|
|
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.1e-07 Score=72.98 Aligned_cols=111 Identities=21% Similarity=0.305 Sum_probs=81.5
Q ss_pred hhHHHHHhhCC------CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-----------------
Q 025475 38 ALRPFVRKYIP------TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE----------------- 94 (252)
Q Consensus 38 ~l~~~~~~~~~------~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~----------------- 94 (252)
.+...|.+..+ .+.+||-.|||.|+++..++..|+ .+.|.|.|--|+-..+-.+..
T Consensus 39 ~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~-~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~s 117 (270)
T PF07942_consen 39 PILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGY-AVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFS 117 (270)
T ss_pred HHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccc-eEEEEEchHHHHHHHHHHHcccCCCCcEEEecceeccc
Confidence 34444555443 245999999999999999999998 899999999886544332110
Q ss_pred -------------------------CCCCeEEEccccCCCCCC--CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHH
Q 025475 95 -------------------------IPQLKYLQMDVRDMSFFE--DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSR 147 (252)
Q Consensus 95 -------------------------~~~v~~~~~d~~~~~~~~--~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~ 147 (252)
..++....+|+.+.-... .++||+|+..+.++.. .+.-..++.|.+
T Consensus 118 n~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA-------~Ni~~Yi~tI~~ 190 (270)
T PF07942_consen 118 NQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA-------ENIIEYIETIEH 190 (270)
T ss_pred CCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech-------HHHHHHHHHHHH
Confidence 013556666666653112 3689999998777776 899999999999
Q ss_pred cccCCcEEE
Q 025475 148 LLKPGGIYM 156 (252)
Q Consensus 148 ~L~~gG~l~ 156 (252)
+|||||+.+
T Consensus 191 lLkpgG~WI 199 (270)
T PF07942_consen 191 LLKPGGYWI 199 (270)
T ss_pred HhccCCEEE
Confidence 999999655
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.3e-07 Score=81.08 Aligned_cols=112 Identities=22% Similarity=0.272 Sum_probs=93.9
Q ss_pred HHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeE
Q 025475 42 FVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 42 ~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
.+...+.++..++|+|||.|.....+...+...++++|.++..+.++...... .....++.+|+.+.+ +++..||.
T Consensus 103 ~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~-fedn~fd~ 181 (364)
T KOG1269|consen 103 ALRESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMP-FEDNTFDG 181 (364)
T ss_pred HHhhcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCC-CCccccCc
Confidence 34444567778999999999999999888766999999999888777776532 123445888999998 89999999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+.+..+..|. ++....+.+++|+++|||+.++.++.
T Consensus 182 v~~ld~~~~~-------~~~~~~y~Ei~rv~kpGG~~i~~e~i 217 (364)
T KOG1269|consen 182 VRFLEVVCHA-------PDLEKVYAEIYRVLKPGGLFIVKEWI 217 (364)
T ss_pred EEEEeecccC-------CcHHHHHHHHhcccCCCceEEeHHHH
Confidence 9999999999 99999999999999999999987653
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=3e-07 Score=79.42 Aligned_cols=98 Identities=9% Similarity=0.163 Sum_probs=79.0
Q ss_pred CcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 51 SRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+|||+.||+|..+..++.. |..+|+++|+++.+++.++++++.+ .++++.+.|+..........||+|.... +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdlDP-f- 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDIDP-F- 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEeCC-C-
Confidence 58999999999999999987 5679999999999999999998543 3578889998876312235799999864 1
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.....++..+.+.+++||.++++.
T Consensus 124 ---------Gs~~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 ---------GTPAPFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred ---------CCcHHHHHHHHHhcccCCEEEEEe
Confidence 233468888899999999999974
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.6e-07 Score=72.15 Aligned_cols=107 Identities=20% Similarity=0.303 Sum_probs=66.7
Q ss_pred CCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------C-CC--CCCeeE
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------F-FE--DESFDA 118 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~-~~--~~~~D~ 118 (252)
+.+|||+||++|.++..+++++ ..+++|+|+.+. ...+++..+++|+.+.. . +. ...+|+
T Consensus 24 ~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~~~~~~i~~d~~~~~~~~~i~~~~~~~~~~~dl 94 (181)
T PF01728_consen 24 GFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPLQNVSFIQGDITNPENIKDIRKLLPESGEKFDL 94 (181)
T ss_dssp TEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS-TTEEBTTGGGEEEEHSHHGGGSHGTTTCSESE
T ss_pred ccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccccceeeeecccchhhHHHhhhhhccccccCcce
Confidence 4699999999999999999997 569999999875 11134555566655421 1 11 268999
Q ss_pred EEeccchhhhcCCC----CChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 119 VIDKGTLDSLMCGT----NAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 119 v~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
|++........... .........+.-+...|++||.+++..+..+..
T Consensus 95 v~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~~~~ 145 (181)
T PF01728_consen 95 VLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKGPEI 145 (181)
T ss_dssp EEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSSTTS
T ss_pred eccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccCccH
Confidence 99988322110000 011334555566678899999999888765443
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-07 Score=75.50 Aligned_cols=113 Identities=26% Similarity=0.353 Sum_probs=87.7
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCe
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
+...+++... +.+..++|+|||.|.....- ....++++|++...+..+++.- ......+|+...+ +.+.+|
T Consensus 34 p~v~qfl~~~-~~gsv~~d~gCGngky~~~~---p~~~~ig~D~c~~l~~~ak~~~----~~~~~~ad~l~~p-~~~~s~ 104 (293)
T KOG1331|consen 34 PMVRQFLDSQ-PTGSVGLDVGCGNGKYLGVN---PLCLIIGCDLCTGLLGGAKRSG----GDNVCRADALKLP-FREESF 104 (293)
T ss_pred HHHHHHHhcc-CCcceeeecccCCcccCcCC---CcceeeecchhhhhccccccCC----CceeehhhhhcCC-CCCCcc
Confidence 4455555554 55889999999998754321 2346999999998887776542 2267889999998 888999
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|.+++..++||+ .....+..+++++.|.|+|||...+..+..
T Consensus 105 d~~lsiavihhl----sT~~RR~~~l~e~~r~lrpgg~~lvyvwa~ 146 (293)
T KOG1331|consen 105 DAALSIAVIHHL----STRERRERALEELLRVLRPGGNALVYVWAL 146 (293)
T ss_pred ccchhhhhhhhh----hhHHHHHHHHHHHHHHhcCCCceEEEEehh
Confidence 999999999998 344677899999999999999987776653
|
|
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.3e-06 Score=68.11 Aligned_cols=100 Identities=19% Similarity=0.311 Sum_probs=75.2
Q ss_pred CCCCC-cEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSS-RVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~-~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
++... +++|+|+|.|.-+..++-.. ..+++.+|.+..-+...+..... ..|+++++..+++ . ....+||+|++.
T Consensus 45 ~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~-~-~~~~~fd~v~aR 122 (184)
T PF02527_consen 45 LPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEE-P-EYRESFDVVTAR 122 (184)
T ss_dssp S-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHH-T-TTTT-EEEEEEE
T ss_pred hccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecc-c-ccCCCccEEEee
Confidence 34333 89999999999888877653 55899999998776666665532 3589999999998 3 456789999986
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+ .....+++-+..++++||.+++.-
T Consensus 123 Av-----------~~l~~l~~~~~~~l~~~G~~l~~K 148 (184)
T PF02527_consen 123 AV-----------APLDKLLELARPLLKPGGRLLAYK 148 (184)
T ss_dssp SS-----------SSHHHHHHHHGGGEEEEEEEEEEE
T ss_pred hh-----------cCHHHHHHHHHHhcCCCCEEEEEc
Confidence 54 566778888999999999988754
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=7e-07 Score=74.57 Aligned_cols=77 Identities=10% Similarity=0.066 Sum_probs=63.0
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCC---CCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED---ESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~---~~~D~v~~~ 122 (252)
.++..++|.+||.|..+..+++.. ..+|+|+|.++.+++.+++++....++++++.|+.++..... .++|.|++.
T Consensus 18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~l~~~~~~vDgIl~D 97 (296)
T PRK00050 18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEVLAEGLGKVDGILLD 97 (296)
T ss_pred CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHHHHcCCCccCEEEEC
Confidence 466799999999999999999884 468999999999999999887554579999999987642222 279999987
Q ss_pred cc
Q 025475 123 GT 124 (252)
Q Consensus 123 ~~ 124 (252)
..
T Consensus 98 LG 99 (296)
T PRK00050 98 LG 99 (296)
T ss_pred CC
Confidence 54
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.4e-06 Score=70.65 Aligned_cols=114 Identities=18% Similarity=0.264 Sum_probs=84.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC---CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCCC-C-CCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG---YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSFF-E-DESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~---~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~~-~-~~~~D~v~ 120 (252)
.++.+|||++++.|.-+..+++.. ...|+++|+++.=++..+++++..+ ++..++.|....+.. . .++||.|+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~iL 234 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRIL 234 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEEE
Confidence 467899999999999999988873 2246999999999999999987654 677888887765422 2 23599999
Q ss_pred eccchhhhcCC--------CCChh-------hHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 121 DKGTLDSLMCG--------TNAPI-------SASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 121 ~~~~l~~~~~~--------~~~~~-------~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+..++.-...- ...+. -..++|..+.++|||||.|+.++++
T Consensus 235 lDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS 290 (355)
T COG0144 235 LDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCS 290 (355)
T ss_pred ECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccC
Confidence 88654422110 01111 1377889999999999999999876
|
|
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=98.38 E-value=3e-06 Score=71.93 Aligned_cols=128 Identities=19% Similarity=0.249 Sum_probs=80.6
Q ss_pred eccchhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHc--------CCCcEEEEeCCHHHHHHHHHhhc--C--CCCC
Q 025475 33 YQRYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKD--------GYEDIVNIDISSVAIDMMKMKYE--E--IPQL 98 (252)
Q Consensus 33 ~~~~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~--------~~~~v~~vD~s~~~i~~a~~~~~--~--~~~v 98 (252)
+.....+..++.+.+. ++.+|+|.+||+|.+...+.+. ...+++|+|+++.++..++.++. . ....
T Consensus 28 ~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~ 107 (311)
T PF02384_consen 28 FYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNI 107 (311)
T ss_dssp C---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGC
T ss_pred eehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccc
Confidence 3344566677666643 4458999999999998888762 34589999999999999887652 1 1234
Q ss_pred eEEEccccCCCCCC-CCCeeEEEeccchhhhcCC--------------CCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 99 KYLQMDVRDMSFFE-DESFDAVIDKGTLDSLMCG--------------TNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 99 ~~~~~d~~~~~~~~-~~~~D~v~~~~~l~~~~~~--------------~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+...|....+... ...||+|+++.++....+. .+....-..++..+.+.|++||++.++.+
T Consensus 108 ~i~~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 108 NIIQGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp EEEES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 58888876554233 5789999999876543010 01111224578899999999999777663
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.4e-06 Score=66.17 Aligned_cols=106 Identities=22% Similarity=0.257 Sum_probs=76.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-------CCCCCee
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-------FEDESFD 117 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-------~~~~~~D 117 (252)
+.++.+|+|+||-+|.+++.+++.. ...|+++|+.|-- -.+++.++++|+++... +....+|
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~---------~~~~V~~iq~d~~~~~~~~~l~~~l~~~~~D 113 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK---------PIPGVIFLQGDITDEDTLEKLLEALGGAPVD 113 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc---------cCCCceEEeeeccCccHHHHHHHHcCCCCcc
Confidence 6788999999999999999998883 3359999997631 22479999999987541 3445579
Q ss_pred EEEeccch--------hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 118 AVIDKGTL--------DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 118 ~v~~~~~l--------~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
+|++...- +|. ....-....+.-+..+|++||.+++..+.....
T Consensus 114 vV~sD~ap~~~g~~~~Dh~----r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~~~ 165 (205)
T COG0293 114 VVLSDMAPNTSGNRSVDHA----RSMYLCELALEFALEVLKPGGSFVAKVFQGEDF 165 (205)
T ss_pred eEEecCCCCcCCCccccHH----HHHHHHHHHHHHHHHeeCCCCeEEEEEEeCCCH
Confidence 99976543 332 111223455666778999999999988765543
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1e-05 Score=64.15 Aligned_cols=100 Identities=16% Similarity=0.160 Sum_probs=78.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-----CCCCCCeeE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-----FFEDESFDA 118 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-----~~~~~~~D~ 118 (252)
.++++||+|.-||..+..++.. ..++++++|+++...+.+.+..+.. ..|+++++...+.- ....++||.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 4569999999999988888776 2569999999999999998776532 36889998876642 245688999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
++... ..........++.+++++||.+++-
T Consensus 153 aFvDa----------dK~nY~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 153 AFVDA----------DKDNYSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred EEEcc----------chHHHHHHHHHHHhhcccccEEEEe
Confidence 99742 2345568899999999999999873
|
|
| >PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.34 E-value=3.4e-06 Score=68.88 Aligned_cols=107 Identities=19% Similarity=0.245 Sum_probs=71.6
Q ss_pred cEEEEcccC--cHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCC--CeEEEccccCCCC----------CCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQ--LKYLQMDVRDMSF----------FEDES 115 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~--v~~~~~d~~~~~~----------~~~~~ 115 (252)
..||+|||- -...-.+++. ..++|+.||.+|-.+..++..+...++ ..++++|+++... +.-..
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~iL~~p~~~~~lD~~r 150 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAILAHPEVRGLLDFDR 150 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHHHCSHHHHCC--TTS
T ss_pred eEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHHhcCHHHHhcCCCCC
Confidence 899999993 2233334433 356999999999999999999877666 8999999998531 11123
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.=.|++..++||+ ++.+++..++..+++.|.||++|.++....
T Consensus 151 PVavll~~vLh~v----~D~~dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 151 PVAVLLVAVLHFV----PDDDDPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp --EEEECT-GGGS-----CGCTHHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred CeeeeeeeeeccC----CCccCHHHHHHHHHHhCCCCceEEEEecCC
Confidence 3467788899998 444789999999999999999999988654
|
; PDB: 3GIW_A 3GO4_A 2QE6_A. |
| >COG3897 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=3.6e-06 Score=64.93 Aligned_cols=115 Identities=17% Similarity=0.270 Sum_probs=81.2
Q ss_pred hHHHHHhhC--CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCC
Q 025475 39 LRPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 39 l~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~ 115 (252)
+.+.+..+- -.+++|||+|+|+|..+...+..|...++..|+.|..+...+-+.+.+. .+.+...|... .+..
T Consensus 67 lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g----~~~~ 142 (218)
T COG3897 67 LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIG----SPPA 142 (218)
T ss_pred HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccceeEEeeccccC----CCcc
Confidence 444444442 2677999999999999999999998899999999988888887775544 56777776654 2346
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
||+++...+++.- ..-.+++.-..++...|-.+++.++.++.
T Consensus 143 ~Dl~LagDlfy~~-------~~a~~l~~~~~~l~~~g~~vlvgdp~R~~ 184 (218)
T COG3897 143 FDLLLAGDLFYNH-------TEADRLIPWKDRLAEAGAAVLVGDPGRAY 184 (218)
T ss_pred eeEEEeeceecCc-------hHHHHHHHHHHHHHhCCCEEEEeCCCCCC
Confidence 9999998876643 45556666334444445566666665543
|
|
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.5e-06 Score=66.52 Aligned_cols=98 Identities=16% Similarity=0.177 Sum_probs=78.4
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh--cCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY--EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~--~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
..+.|+|+|+|.++...+.. ..+|++++.+|...+.|.+++ .+..+++++.+|+.+.. + ...|+|+|-..=..+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~-A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~-f--e~ADvvicEmlDTaL 109 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA-AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD-F--ENADVVICEMLDTAL 109 (252)
T ss_pred hceeeccCCcchHHHHHHhh-hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc-c--cccceeHHHHhhHHh
Confidence 58999999999999988887 669999999999999999995 45568999999999987 5 468999884321111
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
=.+.....++.+...|+.++.++=
T Consensus 110 -----i~E~qVpV~n~vleFLr~d~tiiP 133 (252)
T COG4076 110 -----IEEKQVPVINAVLEFLRYDPTIIP 133 (252)
T ss_pred -----hcccccHHHHHHHHHhhcCCcccc
Confidence 114556778888889999998764
|
|
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=98.32 E-value=7.3e-07 Score=67.77 Aligned_cols=74 Identities=18% Similarity=0.243 Sum_probs=53.5
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCC-CCCCC-eeEEEeccchh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSF-FEDES-FDAVIDKGTLD 126 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~-~~~~~-~D~v~~~~~l~ 126 (252)
.|+|+.||.|..+..+++.. .+|+++|+++..++.++.++.-.+ +++++++|..+... ..... +|+|+++.++-
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~-~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSPPWG 80 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF-DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSPPWG 80 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT--EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE---BS
T ss_pred EEEEeccCcCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECCCCC
Confidence 69999999999999999984 489999999999999999986543 79999999987631 22222 89999987543
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=98.31 E-value=6.2e-06 Score=68.30 Aligned_cols=76 Identities=16% Similarity=0.319 Sum_probs=64.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCC---CCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED---ESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~---~~~D~v~~~~~ 124 (252)
.++..|+|+|+|.|.++..+++.+ .+++++|+++.+++..++.+...++++++.+|+.++. ... .....|+++.+
T Consensus 29 ~~~~~VlEiGpG~G~lT~~L~~~~-~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~~~-~~~~~~~~~~~vv~NlP 106 (262)
T PF00398_consen 29 SEGDTVLEIGPGPGALTRELLKRG-KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLKWD-LYDLLKNQPLLVVGNLP 106 (262)
T ss_dssp GTTSEEEEESSTTSCCHHHHHHHS-SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTTSC-GGGHCSSSEEEEEEEET
T ss_pred CCCCEEEEeCCCCccchhhHhccc-CcceeecCcHhHHHHHHHHhhhcccceeeecchhccc-cHHhhcCCceEEEEEec
Confidence 367799999999999999999997 6999999999999999998876679999999999886 332 45678888776
Q ss_pred h
Q 025475 125 L 125 (252)
Q Consensus 125 l 125 (252)
+
T Consensus 107 y 107 (262)
T PF00398_consen 107 Y 107 (262)
T ss_dssp G
T ss_pred c
Confidence 5
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.6e-06 Score=76.78 Aligned_cols=112 Identities=14% Similarity=0.134 Sum_probs=79.1
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc------C-------------------------------------CCcEEEEeCCHHH
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD------G-------------------------------------YEDIVNIDISSVA 84 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~------~-------------------------------------~~~v~~vD~s~~~ 84 (252)
.++..++|.+||+|.+....+.. | ..+++|+|+++.+
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 45679999999999999887652 0 1258999999999
Q ss_pred HHHHHHhhcCCC---CCeEEEccccCCCC-CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcc---cCCcEEEE
Q 025475 85 IDMMKMKYEEIP---QLKYLQMDVRDMSF-FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLL---KPGGIYML 157 (252)
Q Consensus 85 i~~a~~~~~~~~---~v~~~~~d~~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L---~~gG~l~i 157 (252)
++.|+.++...+ .+++.++|+.+++. ...+++|+|++|.++..- .....+...+.+.+.+.+ .+|+.+++
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r---~~~~~~l~~lY~~lg~~lk~~~~g~~~~l 345 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGER---LGEEPALIALYSQLGRRLKQQFGGWNAAL 345 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCc---cCchHHHHHHHHHHHHHHHHhCCCCeEEE
Confidence 999999986432 58899999988752 223579999999886532 112234444444444444 38888888
Q ss_pred EEcCC
Q 025475 158 ITYGD 162 (252)
Q Consensus 158 ~~~~~ 162 (252)
.+...
T Consensus 346 lt~~~ 350 (702)
T PRK11783 346 FSSSP 350 (702)
T ss_pred EeCCH
Confidence 77543
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-05 Score=62.62 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=82.7
Q ss_pred eeeeccchhhHHHHHhh-----CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE
Q 025475 30 FDWYQRYSALRPFVRKY-----IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ 102 (252)
Q Consensus 30 ~~~~~~~~~l~~~~~~~-----~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~ 102 (252)
..|-...+-|...+..- +.++.+||-+|+.+|.....+... | .+.|++|+.|+...+..-...+.-+|+-.+.
T Consensus 49 R~W~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl 128 (229)
T PF01269_consen 49 RVWNPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPIL 128 (229)
T ss_dssp EEE-TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEE
T ss_pred eecCchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeee
Confidence 45655555666655443 468889999999999999988887 4 5689999999965444433333336888889
Q ss_pred ccccCCCCC--CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 103 MDVRDMSFF--EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 103 ~d~~~~~~~--~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.|++.+..+ .-+..|+|++.-. .+.+.+-++.++...||+||.++++-
T Consensus 129 ~DAr~P~~Y~~lv~~VDvI~~DVa---------Qp~Qa~I~~~Na~~fLk~gG~~~i~i 178 (229)
T PF01269_consen 129 EDARHPEKYRMLVEMVDVIFQDVA---------QPDQARIAALNARHFLKPGGHLIISI 178 (229)
T ss_dssp S-TTSGGGGTTTS--EEEEEEE-S---------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccCCChHHhhcccccccEEEecCC---------ChHHHHHHHHHHHhhccCCcEEEEEE
Confidence 999875422 2347999997643 33677778889999999999988865
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.5e-05 Score=59.73 Aligned_cols=101 Identities=30% Similarity=0.465 Sum_probs=72.9
Q ss_pred EEEEcccCcHhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCC--CeEEEccccC--CCCCCC-CCeeEEEeccch
Q 025475 53 VLMVGCGNALMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQ--LKYLQMDVRD--MSFFED-ESFDAVIDKGTL 125 (252)
Q Consensus 53 vLD~G~G~G~~~~~l~~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~--v~~~~~d~~~--~~~~~~-~~~D~v~~~~~l 125 (252)
++|+|||+|... .+..... ..++++|+++.++..++........ +.+...+... .+ +.. ..||++.....+
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~ 129 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLP-FEDSASFDLVISLLVL 129 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCC-CCCCCceeEEeeeeeh
Confidence 999999999976 3333321 3789999999999986655432111 5788888776 44 555 489999444445
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++. . ....+.++.+.++++|.+++......
T Consensus 130 ~~~-------~-~~~~~~~~~~~l~~~g~~~~~~~~~~ 159 (257)
T COG0500 130 HLL-------P-PAKALRELLRVLKPGGRLVLSDLLRD 159 (257)
T ss_pred hcC-------C-HHHHHHHHHHhcCCCcEEEEEeccCC
Confidence 554 2 88899999999999999998876543
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.7e-06 Score=74.03 Aligned_cols=116 Identities=18% Similarity=0.287 Sum_probs=82.2
Q ss_pred HHHHhhCC--CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCC--CCC
Q 025475 41 PFVRKYIP--TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFF--EDE 114 (252)
Q Consensus 41 ~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~--~~~ 114 (252)
..+..++. ++.+++|+=||.|.++..++.. ..+|+|+|+++.+++.|+++.+.+ .|++++.++.++.... ...
T Consensus 283 ~~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~-~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~~~~ 361 (432)
T COG2265 283 ETALEWLELAGGERVLDLYCGVGTFGLPLAKR-VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWWEGY 361 (432)
T ss_pred HHHHHHHhhcCCCEEEEeccCCChhhhhhccc-CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhccccC
Confidence 33444443 5569999999999999999977 459999999999999999998654 3799999999887522 234
Q ss_pred CeeEEEeccchhhhcCCCCChhhHH-HHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISAS-QMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~-~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
.+|+|+...+ ..... .+++.+.+ ++|..+++++. .|..-.+.+
T Consensus 362 ~~d~VvvDPP----------R~G~~~~~lk~l~~-~~p~~IvYVSC--NP~TlaRDl 405 (432)
T COG2265 362 KPDVVVVDPP----------RAGADREVLKQLAK-LKPKRIVYVSC--NPATLARDL 405 (432)
T ss_pred CCCEEEECCC----------CCCCCHHHHHHHHh-cCCCcEEEEeC--CHHHHHHHH
Confidence 7899998643 22223 44555444 57777777755 344433333
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=98.25 E-value=6.9e-06 Score=74.73 Aligned_cols=78 Identities=15% Similarity=0.225 Sum_probs=56.6
Q ss_pred CCcEEEEcccCcHhHHHHHHcC---------CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCC----CCCCC
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG---------YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMS----FFEDE 114 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~---------~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~----~~~~~ 114 (252)
..+|||.|||+|.+...++... ...++|+|+++.++..++.++...+ .+.+.+.|..... .-..+
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~~ 111 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYLD 111 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccccccccC
Confidence 4589999999999998887642 1478999999999999998875433 3455555543221 01125
Q ss_pred CeeEEEeccchhh
Q 025475 115 SFDAVIDKGTLDS 127 (252)
Q Consensus 115 ~~D~v~~~~~l~~ 127 (252)
.||+|+.|.++.-
T Consensus 112 ~fD~IIgNPPy~~ 124 (524)
T TIGR02987 112 LFDIVITNPPYGR 124 (524)
T ss_pred cccEEEeCCCccc
Confidence 7999999998664
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.24 E-value=7.7e-06 Score=65.20 Aligned_cols=107 Identities=19% Similarity=0.240 Sum_probs=77.1
Q ss_pred hHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCC-CeEEEccccCCCC-CCCC
Q 025475 39 LRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQ-LKYLQMDVRDMSF-FEDE 114 (252)
Q Consensus 39 l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~-v~~~~~d~~~~~~-~~~~ 114 (252)
|...+..+ ..++.++||+|+.||.++..++++|..+|+++|..-..+..--++ .++ +.+...|++.+.. .-.+
T Consensus 67 L~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR~---d~rV~~~E~tN~r~l~~~~~~~ 143 (245)
T COG1189 67 LEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLRN---DPRVIVLERTNVRYLTPEDFTE 143 (245)
T ss_pred HHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHhc---CCcEEEEecCChhhCCHHHccc
Confidence 44445544 346779999999999999999999988999999987655543332 233 3455566666531 1123
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
..|++++.-.+..+ ..+|..+..+++++|.++..
T Consensus 144 ~~d~~v~DvSFISL----------~~iLp~l~~l~~~~~~~v~L 177 (245)
T COG1189 144 KPDLIVIDVSFISL----------KLILPALLLLLKDGGDLVLL 177 (245)
T ss_pred CCCeEEEEeehhhH----------HHHHHHHHHhcCCCceEEEE
Confidence 68899987655444 78899999999999987664
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.1e-06 Score=64.48 Aligned_cols=181 Identities=12% Similarity=0.148 Sum_probs=105.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHH----H--HHHHhh--cCCCCCeEEEccccCCCCCCCCCe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAI----D--MMKMKY--EEIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i----~--~a~~~~--~~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
++++.+|+|+=.|.|.++..+... | .+.|++.-..+... . ..+... ....|++.+-.+...+. +.+..
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~--~pq~~ 123 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALG--APQKL 123 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccC--CCCcc
Confidence 578899999999999999999886 3 33566554433211 1 111111 11125555555555553 44567
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh-hhhhhccc-cccceeEEEEEecCCCCCCCCC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK-ARMIHLKW-KVYNWKIELYIIARPGFEKPGG 194 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 194 (252)
|+++.+...|-+-.-..++....++...+++.|||||.+.+.++.... .....-.. ...+--.........||.+..+
T Consensus 124 d~~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 124 DLVPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRADPGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred cccccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEeccccCCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 888876665544222223566788899999999999999998865221 11100000 0000000011122356666544
Q ss_pred CCCCCcccCCCcccCCCCCCccccccCCCCceEEEEEEecC
Q 025475 195 CSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFIYVCKKMN 235 (252)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~~~~~K~~ 235 (252)
+.....+-.....|.-++..+...-.|.|-++||+
T Consensus 204 ------S~ilaNp~D~~~i~v~dp~~rGetDrf~~kF~Kp~ 238 (238)
T COG4798 204 ------SEILANPDDPRGIWVFDPTIRGETDRFTLKFRKPA 238 (238)
T ss_pred ------ehhhcCCCCCCceeecCccccCccceeEEEeecCC
Confidence 33334444456667777888888889999999984
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.5e-07 Score=71.80 Aligned_cols=95 Identities=19% Similarity=0.309 Sum_probs=73.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
.+.++||+|+|.|..+..++.. ..+|++.++|..|..+.+..- +-+....+.. ..+-++|+|.|.+.++--
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~-feevyATElS~tMr~rL~kk~-------ynVl~~~ew~-~t~~k~dli~clNlLDRc 182 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPT-FEEVYATELSWTMRDRLKKKN-------YNVLTEIEWL-QTDVKLDLILCLNLLDRC 182 (288)
T ss_pred CCeeEEeccCCCcchhhhhcch-HHHHHHHHhhHHHHHHHhhcC-------Cceeeehhhh-hcCceeehHHHHHHHHhh
Confidence 3459999999999999999887 458999999999998887652 1122222232 223369999999988866
Q ss_pred cCCCCChhhHHHHHHHHHHcccC-CcEEEEEE
Q 025475 129 MCGTNAPISASQMLGEVSRLLKP-GGIYMLIT 159 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~-gG~l~i~~ 159 (252)
.++-++++.++.+|+| +|.++++-
T Consensus 183 -------~~p~kLL~Di~~vl~psngrvivaL 207 (288)
T KOG3987|consen 183 -------FDPFKLLEDIHLVLAPSNGRVIVAL 207 (288)
T ss_pred -------cChHHHHHHHHHHhccCCCcEEEEE
Confidence 6889999999999999 89887754
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.22 E-value=5.7e-06 Score=65.76 Aligned_cols=97 Identities=16% Similarity=0.286 Sum_probs=74.0
Q ss_pred CCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCC-eeEEEeccch
Q 025475 50 SSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDES-FDAVIDKGTL 125 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~-~D~v~~~~~l 125 (252)
+.+++|+|+|.|.-+..++-. ...+++.+|....=+...+..... .+|++++++.++++. .+.. ||+|++..+
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~--~~~~~~D~vtsRAv- 144 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFG--QEKKQYDVVTSRAV- 144 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcc--cccccCcEEEeehc-
Confidence 579999999999988887733 344799999997766666555433 458999999999986 2223 999998643
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.....+++-+..++++||.+++.-
T Consensus 145 ----------a~L~~l~e~~~pllk~~g~~~~~k 168 (215)
T COG0357 145 ----------ASLNVLLELCLPLLKVGGGFLAYK 168 (215)
T ss_pred ----------cchHHHHHHHHHhcccCCcchhhh
Confidence 566777888899999999876533
|
|
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.8e-06 Score=65.21 Aligned_cols=102 Identities=20% Similarity=0.175 Sum_probs=61.2
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-----------CCCCCeEEEccccCCCCCC--
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-----------EIPQLKYLQMDVRDMSFFE-- 112 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~-----------~~~~v~~~~~d~~~~~~~~-- 112 (252)
+.++...+|+|||.|.....++.. +..+.+|||+.+...+.|+.... ....+++..+|+.+.+ +.
T Consensus 40 l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~-~~~~ 118 (205)
T PF08123_consen 40 LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPD-FVKD 118 (205)
T ss_dssp --TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHH-HHHH
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccH-hHhh
Confidence 456779999999999988877655 56579999999988877765331 1235778888877643 11
Q ss_pred -CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 113 -DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 113 -~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
-...|+|++++.+-. ++....+.+...-||+|-+++.
T Consensus 119 ~~s~AdvVf~Nn~~F~--------~~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 119 IWSDADVVFVNNTCFD--------PDLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp HGHC-SEEEE--TTT---------HHHHHHHHHHHTTS-TT-EEEE
T ss_pred hhcCCCEEEEeccccC--------HHHHHHHHHHHhcCCCCCEEEE
Confidence 135899999876432 4455556777778888877654
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.19 E-value=2.1e-05 Score=67.30 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=80.5
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCC---------------------------------C-------cEEEEeCCHHHHHH
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGY---------------------------------E-------DIVNIDISSVAIDM 87 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~---------------------------------~-------~v~~vD~s~~~i~~ 87 (252)
.++..++|.-||+|.+....+..+. . .++|+|+++.+++.
T Consensus 190 ~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~ 269 (381)
T COG0116 190 KPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEG 269 (381)
T ss_pred CCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHH
Confidence 4556899999999999999887741 1 27799999999999
Q ss_pred HHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChh-hHHHHHHHHHHcccCCcEEEEEEc
Q 025475 88 MKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPI-SASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 88 a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+.+....+ .|++.++|+.++.. +-+.+|+|++|.++---.-+...-. -...+.+.+.+.++.-+..++++.
T Consensus 270 Ak~NA~~AGv~d~I~f~~~d~~~l~~-~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 270 AKANARAAGVGDLIEFKQADATDLKE-PLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHhcCCCceEEEEEcchhhCCC-CCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 999986533 69999999999862 2278999999998653211111111 334555666677776677777663
|
|
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.1e-05 Score=61.45 Aligned_cols=108 Identities=14% Similarity=0.140 Sum_probs=77.0
Q ss_pred EEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 53 VLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 53 vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
|.|+||.-|.+...+++.| ..+++++|+++..++.|+++++.. .++++..+|..+.- -+.+..|+|+..++
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l-~~~e~~d~ivIAGM---- 75 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL-KPGEDVDTIVIAGM---- 75 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG---GGG---EEEEEEE----
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc-CCCCCCCEEEEecC----
Confidence 6899999999999999998 557999999999999999998653 36899999976642 12233789988775
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
.-.-..+++.+....++....+++........-..++
T Consensus 76 -----GG~lI~~ILe~~~~~~~~~~~lILqP~~~~~~LR~~L 112 (205)
T PF04816_consen 76 -----GGELIIEILEAGPEKLSSAKRLILQPNTHAYELRRWL 112 (205)
T ss_dssp ------HHHHHHHHHHTGGGGTT--EEEEEESS-HHHHHHHH
T ss_pred -----CHHHHHHHHHhhHHHhccCCeEEEeCCCChHHHHHHH
Confidence 2345678888888877776688887776666555555
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=1e-05 Score=68.26 Aligned_cols=88 Identities=13% Similarity=0.159 Sum_probs=66.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.++.++||+||++|.++..++++|. +|++||.++- ...+...++|...+.|..... ...+.+|.++|..+
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~-~V~AVD~g~l-----~~~L~~~~~V~h~~~d~fr~~-p~~~~vDwvVcDmv-- 279 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGM-FVTAVDNGPM-----AQSLMDTGQVEHLRADGFKFR-PPRKNVDWLVCDMV-- 279 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCC-EEEEEechhc-----CHhhhCCCCEEEEeccCcccC-CCCCCCCEEEEecc--
Confidence 35788999999999999999999987 9999996542 222334568899998887764 22678999999765
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPG 152 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~g 152 (252)
..+..+++-+.+.|..|
T Consensus 280 ---------e~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 280 ---------EKPARVAELMAQWLVNG 296 (357)
T ss_pred ---------cCHHHHHHHHHHHHhcC
Confidence 45556667777777654
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=2e-05 Score=66.42 Aligned_cols=107 Identities=20% Similarity=0.289 Sum_probs=81.2
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhh-----c----CCCCCeEEEccccCCCCCCCCCe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKY-----E----EIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~-----~----~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
++...+||-+|.|.|--.+.+.+.. ..+++.||++|.|++.++.+. + ..++++++..|+.++..-..+.|
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 3455689999999999999999985 779999999999999998542 1 13589999999988753345689
Q ss_pred eEEEeccchhhhcCCCCChh----hHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSLMCGTNAPI----SASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|.|+.... .+.++. .-..+..-+.+.|+++|.+++..
T Consensus 367 D~vIVDl~------DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQa 407 (508)
T COG4262 367 DVVIVDLP------DPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQA 407 (508)
T ss_pred cEEEEeCC------CCCCcchhhhhhHHHHHHHHHhcCcCceEEEec
Confidence 99997532 111111 12556677889999999999865
|
|
| >PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.4e-05 Score=66.86 Aligned_cols=115 Identities=21% Similarity=0.261 Sum_probs=84.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCC-CCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSF-FEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~-~~~~~~D~v~~ 121 (252)
..++.+|||++++.|.-+..+++.- .++++++|+++.-+...+.+....+ ++.....|...... .....||.|+.
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 3567799999999999998888872 5699999999999999988886544 67777777776521 23346999998
Q ss_pred ccchhhhcCCCCChh---------------hHHHHHHHHHHcc----cCCcEEEEEEcC
Q 025475 122 KGTLDSLMCGTNAPI---------------SASQMLGEVSRLL----KPGGIYMLITYG 161 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~---------------~~~~~l~~~~~~L----~~gG~l~i~~~~ 161 (252)
.....-...-..+++ ...++|+.+.+.+ +|||+++.+++.
T Consensus 163 DaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsTCS 221 (283)
T PF01189_consen 163 DAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYSTCS 221 (283)
T ss_dssp ECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEESH
T ss_pred CCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEecc
Confidence 765433211111111 1367889999999 999999999875
|
In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A .... |
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.1e-05 Score=59.09 Aligned_cols=105 Identities=20% Similarity=0.241 Sum_probs=83.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-CCCCCeEEEccccCC-CCCCCCCeeEEEeccch
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-EIPQLKYLQMDVRDM-SFFEDESFDAVIDKGTL 125 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~-~~~~v~~~~~d~~~~-~~~~~~~~D~v~~~~~l 125 (252)
.++.+||.+|-|-|.....+.+....+-+.++..|..+++.+..-- +..+|.+..+--++. +.++++.||-|+-.-.-
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~~L~d~~FDGI~yDTy~ 179 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLNTLPDKHFDGIYYDTYS 179 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccccceEEEecchHhhhccccccCcceeEeechh
Confidence 4678999999999999999998875577889999999999988753 234677776655543 23678889999976655
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+. ++...+.+.+.++|||+|.+-...
T Consensus 180 e~y-------Edl~~~hqh~~rLLkP~gv~SyfN 206 (271)
T KOG1709|consen 180 ELY-------EDLRHFHQHVVRLLKPEGVFSYFN 206 (271)
T ss_pred hHH-------HHHHHHHHHHhhhcCCCceEEEec
Confidence 666 899999999999999999876543
|
|
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.5e-05 Score=68.86 Aligned_cols=85 Identities=20% Similarity=0.332 Sum_probs=57.0
Q ss_pred hHHHHHhhCCC-CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC-----
Q 025475 39 LRPFVRKYIPT-SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF----- 110 (252)
Q Consensus 39 l~~~~~~~~~~-~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~----- 110 (252)
+...+...++. +.++||+-||.|.++..++... .+|+|||+++.+++.|++++.. ..+++++.++..++..
T Consensus 185 l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~-~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~ 263 (352)
T PF05958_consen 185 LYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKA-KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKA 263 (352)
T ss_dssp HHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCS-SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS
T ss_pred HHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhC-CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhh
Confidence 34444455442 2389999999999999999984 5999999999999999999854 3489999877654321
Q ss_pred ----------CCCCCeeEEEeccc
Q 025475 111 ----------FEDESFDAVIDKGT 124 (252)
Q Consensus 111 ----------~~~~~~D~v~~~~~ 124 (252)
.....+|+|+..++
T Consensus 264 r~~~~~~~~~~~~~~~d~vilDPP 287 (352)
T PF05958_consen 264 REFNRLKGIDLKSFKFDAVILDPP 287 (352)
T ss_dssp -GGTTGGGS-GGCTTESEEEE---
T ss_pred HHHHhhhhhhhhhcCCCEEEEcCC
Confidence 11236899997654
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00014 Score=56.49 Aligned_cols=122 Identities=20% Similarity=0.260 Sum_probs=88.2
Q ss_pred ceeeeccchhhHHHHHhh-----CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE
Q 025475 29 SFDWYQRYSALRPFVRKY-----IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ 102 (252)
Q Consensus 29 ~~~~~~~~~~l~~~~~~~-----~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~ 102 (252)
...|-...+.+...+..- ++++.+||-+|+.+|.....+... +.+.+++|++|+...+..-..+..-+|+--+.
T Consensus 51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL 130 (231)
T COG1889 51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPIL 130 (231)
T ss_pred eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeee
Confidence 345655555555554433 468889999999999998888887 45689999999987665555555557888888
Q ss_pred ccccCCCCC--CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 103 MDVRDMSFF--EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 103 ~d~~~~~~~--~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.|+.....+ --+..|+|+..-. .+.+..-+..++...|++||+++++-
T Consensus 131 ~DA~~P~~Y~~~Ve~VDviy~DVA---------Qp~Qa~I~~~Na~~FLk~~G~~~i~i 180 (231)
T COG1889 131 EDARKPEKYRHLVEKVDVIYQDVA---------QPNQAEILADNAEFFLKKGGYVVIAI 180 (231)
T ss_pred cccCCcHHhhhhcccccEEEEecC---------CchHHHHHHHHHHHhcccCCeEEEEE
Confidence 998775421 2245899986432 44666777889999999999877754
|
|
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=97.84 E-value=8.9e-05 Score=55.42 Aligned_cols=75 Identities=16% Similarity=0.317 Sum_probs=54.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHH-----cCCCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEccccCCCCCCCCCee
Q 025475 48 PTSSRVLMVGCGNALMSEDMVK-----DGYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~-----~~~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~~D 117 (252)
.+..+|+|+|||.|.++..++. ....+|+++|.++..++.++++.... .++++...++.+.. .....+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 101 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADES--SSDPPD 101 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhc--ccCCCe
Confidence 3566999999999999999998 44559999999999999988876432 24555555554432 245677
Q ss_pred EEEeccc
Q 025475 118 AVIDKGT 124 (252)
Q Consensus 118 ~v~~~~~ 124 (252)
+++.-++
T Consensus 102 ~~vgLHa 108 (141)
T PF13679_consen 102 ILVGLHA 108 (141)
T ss_pred EEEEeec
Confidence 7776543
|
|
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00016 Score=58.49 Aligned_cols=114 Identities=17% Similarity=0.145 Sum_probs=73.8
Q ss_pred hhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCC
Q 025475 38 ALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 38 ~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~ 115 (252)
.+.+.+...+++..+|+|+|||.--++....... ...++|+|++..+++..+..+... .+.++...|+..-+ +...
T Consensus 94 ~fY~~if~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~--~~~~ 171 (251)
T PF07091_consen 94 EFYDEIFGRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDP--PKEP 171 (251)
T ss_dssp HHHHHHCCCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSH--TTSE
T ss_pred HHHHHHHhcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccC--CCCC
Confidence 3444445556677899999999988888777653 459999999999999999887543 36777888887654 5668
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.|+.+..=+++.+ ..+.....++-+.++=.| .++|+.+
T Consensus 172 ~DlaLllK~lp~l-----e~q~~g~g~~ll~~~~~~--~~vVSfP 209 (251)
T PF07091_consen 172 ADLALLLKTLPCL-----ERQRRGAGLELLDALRSP--HVVVSFP 209 (251)
T ss_dssp ESEEEEET-HHHH-----HHHSTTHHHHHHHHSCES--EEEEEEE
T ss_pred cchhhHHHHHHHH-----HHHhcchHHHHHHHhCCC--eEEEecc
Confidence 9999999888888 222223334434443333 5555553
|
|
| >KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00067 Score=52.21 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=70.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-cccCCC-------CCCCCCe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DVRDMS-------FFEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-d~~~~~-------~~~~~~~ 116 (252)
+.|+.+|||+||.+|.++.-..++ ..+.+.|||+-. +...+.+.++++ |+++.. .++....
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~~Ga~~i~~~dvtdp~~~~ki~e~lp~r~V 137 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPPEGATIIQGNDVTDPETYRKIFEALPNRPV 137 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCCCCcccccccccCCHHHHHHHHHhCCCCcc
Confidence 568889999999999999988877 256899999832 111124566666 676642 1466789
Q ss_pred eEEEeccchhhhcCCCCChhh----HHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 117 DAVIDKGTLDSLMCGTNAPIS----ASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~----~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
|+|++...-........+-.. ..+++.-....+.|+|.+++-.|.+..
T Consensus 138 dvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 138 DVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred cEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 999987543221111111111 123334445677899999998887544
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00029 Score=57.29 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=78.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCC-CCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF-FEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~-~~~~~~D~v~ 120 (252)
+.|+.+|+|-|.|+|+++..+++. + -++++.+|+.+.-.+.|++.++.. .++++..-|+..... ..+..+|.|+
T Consensus 103 i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ks~~aDaVF 182 (314)
T KOG2915|consen 103 IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLIKSLKADAVF 182 (314)
T ss_pred CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccccccccceEE
Confidence 568999999999999999999887 2 568999999998888888887542 389999999987652 3367899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCc-EEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGG-IYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG-~l~i~~ 159 (252)
... ..+..++..++.+||.+| +++...
T Consensus 183 LDl------------PaPw~AiPha~~~lk~~g~r~csFS 210 (314)
T KOG2915|consen 183 LDL------------PAPWEAIPHAAKILKDEGGRLCSFS 210 (314)
T ss_pred EcC------------CChhhhhhhhHHHhhhcCceEEecc
Confidence 742 566667777778888777 444433
|
|
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00022 Score=58.90 Aligned_cols=103 Identities=18% Similarity=0.373 Sum_probs=65.7
Q ss_pred CCcEEEEcccCcHhHHHHHHc--C-CCcEEEEeCCHHHHHHHHHhhc-C---CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 50 SSRVLMVGCGNALMSEDMVKD--G-YEDIVNIDISSVAIDMMKMKYE-E---IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~--~-~~~v~~vD~s~~~i~~a~~~~~-~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+.+|+=+|||.=-++..+... + ...++++|+++.+++.+++..+ . ..+++++.+|..+.. ..-..||+|+..
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~-~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT-YDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG--GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc-cccccCCEEEEh
Confidence 359999999987666665543 3 3479999999999999998776 2 237899999998765 334579999876
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
....- +.+...+++..+.+.+++|..+++-.
T Consensus 200 alVg~------~~e~K~~Il~~l~~~m~~ga~l~~Rs 230 (276)
T PF03059_consen 200 ALVGM------DAEPKEEILEHLAKHMAPGARLVVRS 230 (276)
T ss_dssp TT-S----------SHHHHHHHHHHHS-TTSEEEEEE
T ss_pred hhccc------ccchHHHHHHHHHhhCCCCcEEEEec
Confidence 44321 23688999999999999999998865
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >COG2384 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00081 Score=53.20 Aligned_cols=127 Identities=13% Similarity=0.080 Sum_probs=91.2
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~ 115 (252)
...+.+.++.+.++.|+||--|.+...+.+.+ ...+++.|+++..++.|.++++... .++..++|....- ..++.
T Consensus 7 L~~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l-~~~d~ 85 (226)
T COG2384 7 LTTVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL-ELEDE 85 (226)
T ss_pred HHHHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc-CccCC
Confidence 34455666777789999999999999999987 6689999999999999999986544 5666667764432 34457
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhcccccccee
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWK 178 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~ 178 (252)
+|+|+..+.=- .-...++++-.+-|+.--++++.....+..-..++ ...+|.
T Consensus 86 ~d~ivIAGMGG---------~lI~~ILee~~~~l~~~~rlILQPn~~~~~LR~~L--~~~~~~ 137 (226)
T COG2384 86 IDVIVIAGMGG---------TLIREILEEGKEKLKGVERLILQPNIHTYELREWL--SANSYE 137 (226)
T ss_pred cCEEEEeCCcH---------HHHHHHHHHhhhhhcCcceEEECCCCCHHHHHHHH--HhCCce
Confidence 99998876422 44567777777777644577777666665555555 334444
|
|
| >COG4627 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.73 E-value=2.1e-05 Score=58.39 Aligned_cols=57 Identities=26% Similarity=0.398 Sum_probs=46.6
Q ss_pred CeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 98 LKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 98 v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+.+++-...... |.+++.|+|++..+++|+ ..+.-..++++++|.|||||+|-++.+
T Consensus 31 vdlvc~As~e~~-F~dns~d~iyaeHvlEHl-----t~~Eg~~alkechr~Lrp~G~LriAvP 87 (185)
T COG4627 31 VDLVCRASNESM-FEDNSVDAIYAEHVLEHL-----TYDEGTSALKECHRFLRPGGKLRIAVP 87 (185)
T ss_pred cchhhhhhhhcc-CCCcchHHHHHHHHHHHH-----hHHHHHHHHHHHHHHhCcCcEEEEEcC
Confidence 444433334445 889999999999999999 777889999999999999999999764
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00012 Score=59.37 Aligned_cols=80 Identities=8% Similarity=-0.046 Sum_probs=62.5
Q ss_pred CCCC--cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-----------CCCeEEEccccCCCCCCCC
Q 025475 48 PTSS--RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-----------PQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 48 ~~~~--~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-----------~~v~~~~~d~~~~~~~~~~ 114 (252)
+++. +|||+-+|.|..+..++..|. +|+++|-++.+....+..+... .+++++.+|..++..-...
T Consensus 85 k~g~~p~VLD~TAGlG~Da~~las~G~-~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~ 163 (250)
T PRK10742 85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (250)
T ss_pred CCCCCCEEEECCCCccHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCC
Confidence 4544 899999999999999999987 5999999999888777766431 3578888888775322234
Q ss_pred CeeEEEeccchhhh
Q 025475 115 SFDAVIDKGTLDSL 128 (252)
Q Consensus 115 ~~D~v~~~~~l~~~ 128 (252)
+||+|++...+.|-
T Consensus 164 ~fDVVYlDPMfp~~ 177 (250)
T PRK10742 164 RPQVVYLDPMFPHK 177 (250)
T ss_pred CCcEEEECCCCCCC
Confidence 79999999877664
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=53.70 Aligned_cols=57 Identities=18% Similarity=0.201 Sum_probs=46.9
Q ss_pred cEEEEcccCcHhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCC
Q 025475 52 RVLMVGCGNALMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDM 108 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~-~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~ 108 (252)
.++|+|||.|..+..++..+. .+++++|+++.+.+.++++++.. +++++++..+.+-
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~~ 60 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGDR 60 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeCC
Confidence 489999999999999998863 37999999999999999987532 4677777776653
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00028 Score=58.52 Aligned_cols=115 Identities=18% Similarity=0.323 Sum_probs=75.7
Q ss_pred chhhHHHHHhhCCC------CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cC------------
Q 025475 36 YSALRPFVRKYIPT------SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EE------------ 94 (252)
Q Consensus 36 ~~~l~~~~~~~~~~------~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~---~~------------ 94 (252)
+..+.+.+.+..++ +.+||-.|||.|+++..++..|. .+-|=+.|--|+=...-.+ +.
T Consensus 131 ykpii~~l~~lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~-~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~ 209 (369)
T KOG2798|consen 131 YKPIIEELNSLFPSRGKERTKIRILVPGAGLGRLAYDLACLGF-KCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQ 209 (369)
T ss_pred hhhHHHHHHhhCCCccccccCceEEecCCCchhHHHHHHHhcc-cccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeec
Confidence 34456666666554 56999999999999999999985 5566677665542221111 00
Q ss_pred ---------------CC------------CCeEEEccccCCCC--CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHH
Q 025475 95 ---------------IP------------QLKYLQMDVRDMSF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEV 145 (252)
Q Consensus 95 ---------------~~------------~v~~~~~d~~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~ 145 (252)
.| ...+..+|+.+.-. -..+.+|+|+..+.++.. .+.-..++.|
T Consensus 210 ~sn~~~~dDQlrpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa-------~NileYi~tI 282 (369)
T KOG2798|consen 210 YSNSLSRDDQLRPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA-------HNILEYIDTI 282 (369)
T ss_pred cccccccccccccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech-------HHHHHHHHHH
Confidence 01 12223345444320 123469999988777766 8899999999
Q ss_pred HHcccCCcEEEEE
Q 025475 146 SRLLKPGGIYMLI 158 (252)
Q Consensus 146 ~~~L~~gG~l~i~ 158 (252)
+.+|+|||+.+=.
T Consensus 283 ~~iLk~GGvWiNl 295 (369)
T KOG2798|consen 283 YKILKPGGVWINL 295 (369)
T ss_pred HHhccCCcEEEec
Confidence 9999999997643
|
|
| >KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00039 Score=59.88 Aligned_cols=113 Identities=16% Similarity=0.160 Sum_probs=80.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCC--CCCCCeeEEEe
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSF--FEDESFDAVID 121 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~--~~~~~~D~v~~ 121 (252)
.++.||||+++-.|.-+..++.. +.+.|++.|.+..-++..+.++...+ +..+...|..+++. ++. +||-|+.
T Consensus 240 q~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~~~-~fDRVLL 318 (460)
T KOG1122|consen 240 QPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEFPG-SFDRVLL 318 (460)
T ss_pred CCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCceEEEccCcccccccccCc-ccceeee
Confidence 47779999999999877777665 35689999999999988888886544 55666677766541 333 8999998
Q ss_pred ccchhhhcC--------CCC-------ChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 122 KGTLDSLMC--------GTN-------APISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 122 ~~~l~~~~~--------~~~-------~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..+..-... ... -..-.++++..+..++++||+|+.++++
T Consensus 319 DAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 319 DAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred cCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 765442100 011 1122477888889999999999998875
|
|
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.0001 Score=64.89 Aligned_cols=69 Identities=14% Similarity=0.356 Sum_probs=56.2
Q ss_pred hHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCC
Q 025475 39 LRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDM 108 (252)
Q Consensus 39 l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~ 108 (252)
+-..+..+ ++.+..++|+.||||.+++.+++. ...|+|+++++++++-|+.+...+ .|.+|+++-.++.
T Consensus 371 Lys~i~e~~~l~~~k~llDv~CGTG~iglala~~-~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~ 443 (534)
T KOG2187|consen 371 LYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG-VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDL 443 (534)
T ss_pred HHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc-ccceeeeecChhhcchhhhcchhcCccceeeeecchhhc
Confidence 34445554 467789999999999999999887 669999999999999999988543 3899999966654
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.56 E-value=7.2e-05 Score=58.88 Aligned_cols=97 Identities=18% Similarity=0.210 Sum_probs=69.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCC---CCCCCCeeEEEec
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMS---FFEDESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~---~~~~~~~D~v~~~ 122 (252)
....|+|.-||.|..+..++.++. .|+++|++|--+..|+.+++-.+ +|+++++|+.+.. ++....+|+|+.+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~-~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~~K~~~~~vf~s 172 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGP-YVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKADKIKYDCVFLS 172 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCC-eEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhhhhheeeeeecC
Confidence 445899999999988888888865 89999999999999999986432 8999999998752 1333446788766
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGG 153 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG 153 (252)
.....- +....-+-.+...++|.|
T Consensus 173 ppwggp-------~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 173 PPWGGP-------SYLRADVYDLETHLKPMG 196 (263)
T ss_pred CCCCCc-------chhhhhhhhhhhhcchhH
Confidence 543322 444444444555555544
|
|
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=53.66 Aligned_cols=115 Identities=16% Similarity=0.136 Sum_probs=78.3
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEccccCC-CCCCCCCeeEEE
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDM-SFFEDESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~~~-~~~~~~~~D~v~ 120 (252)
.+.+||++|.|. |..+..++-. ....|...|-++..++..++....+ ..+.....+...- .......||.|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 456899999995 4444444433 3558999999999999888765321 1121111111111 113445899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
+..++.+- +...++++.|.++|+|.|..++..+.+...-...+
T Consensus 109 aADClFfd-------E~h~sLvdtIk~lL~p~g~Al~fsPRRg~sL~kF~ 151 (201)
T KOG3201|consen 109 AADCLFFD-------EHHESLVDTIKSLLRPSGRALLFSPRRGQSLQKFL 151 (201)
T ss_pred eccchhHH-------HHHHHHHHHHHHHhCcccceeEecCcccchHHHHH
Confidence 99998876 88899999999999999998888776665433333
|
|
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=97.53 E-value=4.6e-05 Score=53.91 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=43.9
Q ss_pred EEEcccCcHhHHHHHHc----CCCcEEEEeCCHH---HHHHHHHhhcCCCCCeEEEccccCCC-CCCCCCeeEEEeccch
Q 025475 54 LMVGCGNALMSEDMVKD----GYEDIVNIDISSV---AIDMMKMKYEEIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 125 (252)
Q Consensus 54 LD~G~G~G~~~~~l~~~----~~~~v~~vD~s~~---~i~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~~~D~v~~~~~l 125 (252)
||+|+..|..+..+++. +..+++++|..+. .-+..++ ..-..++++++++..+.. .+..+++|+++.....
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~-~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKK-AGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhh-cCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 68999999988887764 1237999999994 3333332 111237899999986642 1335689999987642
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. . +.....++.+.+.|+|||.+++-+
T Consensus 80 ~-~-------~~~~~dl~~~~~~l~~ggviv~dD 105 (106)
T PF13578_consen 80 S-Y-------EAVLRDLENALPRLAPGGVIVFDD 105 (106)
T ss_dssp --H-------HHHHHHHHHHGGGEEEEEEEEEE-
T ss_pred C-H-------HHHHHHHHHHHHHcCCCeEEEEeC
Confidence 2 2 566778899999999999988643
|
|
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00044 Score=58.24 Aligned_cols=110 Identities=15% Similarity=0.158 Sum_probs=67.7
Q ss_pred CCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC------CCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 50 SSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI------PQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~------~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+.+|||+|.|.|.-+..+-.. ....++.++.|+..-+.......+. .+..-+..|-..++ ....+++++.
T Consensus 114 pqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp--~ad~ytl~i~ 191 (484)
T COG5459 114 PQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLP--AADLYTLAIV 191 (484)
T ss_pred cchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCC--ccceeehhhh
Confidence 347999999998766555443 1346788888887666655544221 11222333333333 3345666554
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
..-|-+. .+.......++.+..++.|||.+++++.+.|..
T Consensus 192 ~~eLl~d----~~ek~i~~~ie~lw~l~~~gg~lVivErGtp~G 231 (484)
T COG5459 192 LDELLPD----GNEKPIQVNIERLWNLLAPGGHLVIVERGTPAG 231 (484)
T ss_pred hhhhccc----cCcchHHHHHHHHHHhccCCCeEEEEeCCCchh
Confidence 4332222 233445668999999999999999999887754
|
|
| >PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00093 Score=49.42 Aligned_cols=86 Identities=24% Similarity=0.349 Sum_probs=57.9
Q ss_pred cEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCC-CCeeEEEeccchhhhcCCC----CChhhHHHHHHHH
Q 025475 74 DIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFED-ESFDAVIDKGTLDSLMCGT----NAPISASQMLGEV 145 (252)
Q Consensus 74 ~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~-~~~D~v~~~~~l~~~~~~~----~~~~~~~~~l~~~ 145 (252)
+|+++|+-+++++..++++... .+++++..+=.++...-+ +++|+++.|.. ++.-+. -.++...+.++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFNLG--YLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFNLG--YLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEEES--B-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEECC--cCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999999653 368999988777764333 48999998753 221111 1224457788899
Q ss_pred HHcccCCcEEEEEEcC
Q 025475 146 SRLLKPGGIYMLITYG 161 (252)
Q Consensus 146 ~~~L~~gG~l~i~~~~ 161 (252)
.++|++||.+.++.+.
T Consensus 79 l~lL~~gG~i~iv~Y~ 94 (140)
T PF06962_consen 79 LELLKPGGIITIVVYP 94 (140)
T ss_dssp HHHEEEEEEEEEEE--
T ss_pred HHhhccCCEEEEEEeC
Confidence 9999999999888764
|
; PDB: 3EEY_H 3LBY_A 3MTI_A. |
| >PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.004 Score=49.12 Aligned_cols=109 Identities=15% Similarity=0.097 Sum_probs=67.5
Q ss_pred CcEEEEcccCcHhHHHHHHc-C--CCcEEEEeCCHHHHHHHHHhhcC---------------------------------
Q 025475 51 SRVLMVGCGNALMSEDMVKD-G--YEDIVNIDISSVAIDMMKMKYEE--------------------------------- 94 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~-~--~~~v~~vD~s~~~i~~a~~~~~~--------------------------------- 94 (252)
.++.|.+||.|.+..-+.-. + ...+++.|+++++++.|++++.-
T Consensus 53 ~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA~ 132 (246)
T PF11599_consen 53 YTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESAD 132 (246)
T ss_dssp EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH
T ss_pred eeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHHH
Confidence 38999999999977666443 2 55899999999999999886410
Q ss_pred -----------CCCCeEEEccccCCCC----CCCCCeeEEEeccchhhhcCCCC--ChhhHHHHHHHHHHcccCCcEEEE
Q 025475 95 -----------IPQLKYLQMDVRDMSF----FEDESFDAVIDKGTLDSLMCGTN--APISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 95 -----------~~~v~~~~~d~~~~~~----~~~~~~D~v~~~~~l~~~~~~~~--~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
.....+.+.|+++... ......|+|+...++-++-.+.. +..-...+++.++.+|..++++.+
T Consensus 133 RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~v 212 (246)
T PF11599_consen 133 RLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVAV 212 (246)
T ss_dssp HHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEEE
T ss_pred HHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEEE
Confidence 0134577888887431 12234699999988777633333 445568899999999966666666
Q ss_pred EE
Q 025475 158 IT 159 (252)
Q Consensus 158 ~~ 159 (252)
++
T Consensus 213 ~~ 214 (246)
T PF11599_consen 213 SD 214 (246)
T ss_dssp EE
T ss_pred ec
Confidence 44
|
This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A. |
| >PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0012 Score=55.12 Aligned_cols=78 Identities=19% Similarity=0.224 Sum_probs=43.6
Q ss_pred CCcEEEEcccCcHh-HHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEcc----ccCCCCCCCCCeeEE
Q 025475 50 SSRVLMVGCGNALM-SEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMD----VRDMSFFEDESFDAV 119 (252)
Q Consensus 50 ~~~vLD~G~G~G~~-~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d----~~~~~~~~~~~~D~v 119 (252)
..++||||+|.... .+..+.. ++ +++|+|+++..++.|+++++.. .+|+++... +.+......+.||..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W-~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft 181 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGW-SFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFT 181 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCC-eEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEE
Confidence 45899999997643 3333332 57 9999999999999999998654 257766543 222111234689999
Q ss_pred Eeccchhhh
Q 025475 120 IDKGTLDSL 128 (252)
Q Consensus 120 ~~~~~l~~~ 128 (252)
+|+.+++.-
T Consensus 182 mCNPPFy~s 190 (299)
T PF05971_consen 182 MCNPPFYSS 190 (299)
T ss_dssp EE-----SS
T ss_pred ecCCccccC
Confidence 999997754
|
The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0014 Score=55.08 Aligned_cols=78 Identities=12% Similarity=0.149 Sum_probs=62.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCC----CCCCCeeEEEe
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF----FEDESFDAVID 121 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~----~~~~~~D~v~~ 121 (252)
.++..++|.-+|.|..+..+++. +.++++|+|.++.+++.+++.+... +++++++++..++.. ....++|.|++
T Consensus 19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEHLDELLVTKIDGILV 98 (305)
T ss_pred CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHHHHhcCCCcccEEEE
Confidence 46679999999999999999986 3479999999999999999987653 378999999887542 23356898888
Q ss_pred ccch
Q 025475 122 KGTL 125 (252)
Q Consensus 122 ~~~l 125 (252)
+..+
T Consensus 99 DLGv 102 (305)
T TIGR00006 99 DLGV 102 (305)
T ss_pred eccC
Confidence 7543
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >KOG3115 consensus Methyltransferase-like protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0011 Score=51.62 Aligned_cols=111 Identities=20% Similarity=0.247 Sum_probs=67.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc-------C--CCCCeEEEccccCCC-C-CCCCCe
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE-------E--IPQLKYLQMDVRDMS-F-FEDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~-------~--~~~v~~~~~d~~~~~-~-~~~~~~ 116 (252)
+...+.|||||-|.+...++... ..-++|++|-...-+..++++. . .+|+.+...+...+. + +..++.
T Consensus 60 ~kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqL 139 (249)
T KOG3115|consen 60 KKVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQL 139 (249)
T ss_pred ccceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccc
Confidence 34579999999999999999885 5578888887766666665542 1 346777777766542 1 223333
Q ss_pred eEEEe-ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVID-KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+-.+. ..--|.-..-....--...++.++.-+|++||.++.++
T Consensus 140 skmff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 140 SKMFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ccceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 33332 21111110000000112567888889999999998876
|
|
| >KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0024 Score=51.18 Aligned_cols=101 Identities=19% Similarity=0.229 Sum_probs=73.0
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHH----HHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCee
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSV----AIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~----~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D 117 (252)
+++++.+||-+|+++|.....+... | ...|++|+.|+. .+..|+++ +||-.+..|++.... +.-+-.|
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR----tNiiPIiEDArhP~KYRmlVgmVD 228 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR----TNIIPIIEDARHPAKYRMLVGMVD 228 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc----CCceeeeccCCCchheeeeeeeEE
Confidence 3679999999999999988887776 3 568999999974 45555544 577777778776532 2223567
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|++.- ..+++...+.-+++..||+||-++++-
T Consensus 229 vIFaDv---------aqpdq~RivaLNA~~FLk~gGhfvisi 261 (317)
T KOG1596|consen 229 VIFADV---------AQPDQARIVALNAQYFLKNGGHFVISI 261 (317)
T ss_pred EEeccC---------CCchhhhhhhhhhhhhhccCCeEEEEE
Confidence 777642 244566666778889999999988865
|
|
| >COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.013 Score=52.94 Aligned_cols=127 Identities=17% Similarity=0.165 Sum_probs=84.2
Q ss_pred ccchhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHc-C----CCcEEEEeCCHHHHHHHHHhhc--CCC-CCeEEEc
Q 025475 34 QRYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKD-G----YEDIVNIDISSVAIDMMKMKYE--EIP-QLKYLQM 103 (252)
Q Consensus 34 ~~~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~-~----~~~v~~vD~s~~~i~~a~~~~~--~~~-~v~~~~~ 103 (252)
...+.+.+++.+.+. +..+|+|..||+|.+.....+. + ...++|.|+++.....|+.+.- +.. ++....+
T Consensus 169 yTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~ 248 (489)
T COG0286 169 YTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHG 248 (489)
T ss_pred CChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccc
Confidence 344567777777665 4558999999999877776654 1 2469999999999999998862 222 3455555
Q ss_pred cccCCCCC----CCCCeeEEEeccchhhhcC----------------C--CCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 104 DVRDMSFF----EDESFDAVIDKGTLDSLMC----------------G--TNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 104 d~~~~~~~----~~~~~D~v~~~~~l~~~~~----------------~--~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|...-+.. ....||.|+++..+.-..+ + .+....-..++..+...|+|||+..++..
T Consensus 249 dtl~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl~ 327 (489)
T COG0286 249 DTLSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVLP 327 (489)
T ss_pred ccccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEec
Confidence 54433312 3367999999987641100 1 11112227789999999999887665543
|
|
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0022 Score=53.46 Aligned_cols=73 Identities=15% Similarity=0.203 Sum_probs=59.3
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCC-CCCeeEEEeccchhhh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-DESFDAVIDKGTLDSL 128 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~-~~~~D~v~~~~~l~~~ 128 (252)
+++|+.||.|.+...+...|...+.++|+++.+++..+.++.. ..+++|+.++.... ...+|+++...++..+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~----~~~~~Di~~~~~~~~~~~~D~l~~gpPCq~f 75 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPN----KLIEGDITKIDEKDFIPDIDLLTGGFPCQPF 75 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCC----CCccCccccCchhhcCCCCCEEEeCCCChhh
Confidence 6999999999999999998877889999999999999988743 25678888775222 3579999998876644
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0064 Score=51.83 Aligned_cols=119 Identities=17% Similarity=0.159 Sum_probs=79.0
Q ss_pred HHhhCCCCCcEEEEcccCcHhHHHHHHcC-----CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCC-----
Q 025475 43 VRKYIPTSSRVLMVGCGNALMSEDMVKDG-----YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSF----- 110 (252)
Q Consensus 43 ~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-----~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~----- 110 (252)
+.--+.++.+|||+++..|.-+..+++.. ...+++=|.++.=+..........+ ++.+...++..++.
T Consensus 149 L~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~~ 228 (375)
T KOG2198|consen 149 LALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLKD 228 (375)
T ss_pred hhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceecccccccc
Confidence 33346788999999999999998888763 1268999999887777766664433 44455555544432
Q ss_pred ---CCCCCeeEEEeccchhhh--cCCCC--------------ChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 111 ---FEDESFDAVIDKGTLDSL--MCGTN--------------APISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 111 ---~~~~~~D~v~~~~~l~~~--~~~~~--------------~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.....||-|++.-...+= +...+ =+.-...++.+..++||+||.++-++++
T Consensus 229 ~~~~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCS 298 (375)
T KOG2198|consen 229 GNDKEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCS 298 (375)
T ss_pred CchhhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccC
Confidence 133469999886533221 00000 0112356788889999999999999976
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0013 Score=58.13 Aligned_cols=117 Identities=15% Similarity=0.300 Sum_probs=72.9
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHH----HHHHHHHhhcCCCCCeEEEccc-cCCCCCCCCCeeEEEeccchh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSV----AIDMMKMKYEEIPQLKYLQMDV-RDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~----~i~~a~~~~~~~~~v~~~~~d~-~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.|+|+.+|.|.++..|.+.. |..+...+. .+...-.+ +-+-. -.|- +.++ .-..+||+|.++..+.
T Consensus 368 NVMDMnAg~GGFAAAL~~~~---VWVMNVVP~~~~ntL~vIydR----GLIG~-yhDWCE~fs-TYPRTYDLlHA~~lfs 438 (506)
T PF03141_consen 368 NVMDMNAGYGGFAAALIDDP---VWVMNVVPVSGPNTLPVIYDR----GLIGV-YHDWCEAFS-TYPRTYDLLHADGLFS 438 (506)
T ss_pred eeeeecccccHHHHHhccCC---ceEEEecccCCCCcchhhhhc----ccchh-ccchhhccC-CCCcchhheehhhhhh
Confidence 79999999999999998863 555544443 11111111 00111 1111 1222 2346899999998876
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhccccccceeEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELY 182 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (252)
.. .+.-+...++-++.|+|+|+|.++|-+...-..+...+ .....|....+
T Consensus 439 ~~----~~rC~~~~illEmDRILRP~G~~iiRD~~~vl~~v~~i-~~~lrW~~~~~ 489 (506)
T PF03141_consen 439 LY----KDRCEMEDILLEMDRILRPGGWVIIRDTVDVLEKVKKI-AKSLRWEVRIH 489 (506)
T ss_pred hh----cccccHHHHHHHhHhhcCCCceEEEeccHHHHHHHHHH-HHhCcceEEEE
Confidence 65 23346788899999999999999998754444444444 35666764433
|
; GO: 0008168 methyltransferase activity |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0095 Score=44.19 Aligned_cols=106 Identities=8% Similarity=0.162 Sum_probs=71.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
+..+.+|+|+|.|......++.|....+|+++++..+..++-+.-. ...+.|..-|+.+.+ +.+-.+-+|+- +
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~d-l~dy~~vviFg--a- 147 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVD-LRDYRNVVIFG--A- 147 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcc-ccccceEEEee--h-
Confidence 4458999999999999999999866899999999998887766421 236778888887776 55444434432 2
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhh
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARM 167 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~ 167 (252)
++....+-.++..-|..+-.++..-+--|.++.
T Consensus 148 ---------es~m~dLe~KL~~E~p~nt~vvacRFPLP~w~l 180 (199)
T KOG4058|consen 148 ---------ESVMPDLEDKLRTELPANTRVVACRFPLPTWQL 180 (199)
T ss_pred ---------HHHHhhhHHHHHhhCcCCCeEEEEecCCCccch
Confidence 133344445555556667777766655555433
|
|
| >PHA01634 hypothetical protein | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0058 Score=44.08 Aligned_cols=46 Identities=9% Similarity=-0.005 Sum_probs=42.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
.+.+|+|+|++.|..++.++..|+..|++++.++...+..+++++.
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~ 73 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAY 73 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhh
Confidence 4679999999999999999999998999999999999999887753
|
|
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0027 Score=52.41 Aligned_cols=111 Identities=21% Similarity=0.252 Sum_probs=82.3
Q ss_pred HhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCC-CCCCC
Q 025475 44 RKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSF-FEDES 115 (252)
Q Consensus 44 ~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~-~~~~~ 115 (252)
...++...++|-+|.|.|...+..+.+. ..+++.+|++...++..+..+.. .+++.+..+|...+-. ...++
T Consensus 116 l~s~~npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~ 195 (337)
T KOG1562|consen 116 LCSHPNPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENP 195 (337)
T ss_pred cccCCCCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCC
Confidence 3445677799999999999999988885 55899999999999998887642 3578999998876532 45789
Q ss_pred eeEEEeccc--hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGT--LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~--l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
||+|+..-. .... -..-...++..+.+.||+||++++..
T Consensus 196 ~dVii~dssdpvgpa-----~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 196 FDVIITDSSDPVGPA-----CALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred ceEEEEecCCccchH-----HHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 999986321 0000 00123667778889999999998866
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.024 Score=45.77 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=61.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCC-CCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDM-SFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~-~~~~~~~~D~v~~~~~l~ 126 (252)
.+.+||-+|-..-......+.....+|+.+|+++..++..++..+..+ +++.+..|+++. |+.-.++||+++...+.-
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TDPPyT 123 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFTDPPYT 123 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE---SS
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEeCCCCC
Confidence 577999999765432222223335699999999999999988875433 599999999875 323357899999987633
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCc-EEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGG-IYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG-~l~i~~ 159 (252)
+ +...-++.+....|+..| ..++.-
T Consensus 124 -~-------~G~~LFlsRgi~~Lk~~g~~gy~~~ 149 (243)
T PF01861_consen 124 -P-------EGLKLFLSRGIEALKGEGCAGYFGF 149 (243)
T ss_dssp -H-------HHHHHHHHHHHHTB-STT-EEEEEE
T ss_pred -H-------HHHHHHHHHHHHHhCCCCceEEEEE
Confidence 2 677888999999998766 444433
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) [] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0056 Score=48.37 Aligned_cols=102 Identities=15% Similarity=0.115 Sum_probs=55.1
Q ss_pred CCcEEEEcccCcHhHHHHHHc-----CCCcEEEEeCCHHHHHH-HHHhhcCCCCCeEEEccccCCCC------C-CCCCe
Q 025475 50 SSRVLMVGCGNALMSEDMVKD-----GYEDIVNIDISSVAIDM-MKMKYEEIPQLKYLQMDVRDMSF------F-EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~-----~~~~v~~vD~s~~~i~~-a~~~~~~~~~v~~~~~d~~~~~~------~-~~~~~ 116 (252)
+..|+|+|.-.|..+...++. +.++|+++|++...... +.+...-.++|+++++|..+... . .....
T Consensus 33 Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~~~~~~ 112 (206)
T PF04989_consen 33 PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSIDPEIVDQVRELASPPHP 112 (206)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSSTHHHHTSGSS----SS
T ss_pred CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCCHHHHHHHHHhhccCCc
Confidence 458999999998877766553 35699999996432221 12211123589999999877531 1 12234
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+|+... -|.. ++..+.|+....++++|+++++-+
T Consensus 113 vlVilDs-~H~~-------~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 113 VLVILDS-SHTH-------EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp EEEEESS------------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred eEEEECC-CccH-------HHHHHHHHHhCccCCCCCEEEEEe
Confidence 4555543 2322 566778888999999999999855
|
Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E. |
| >PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0011 Score=49.71 Aligned_cols=108 Identities=19% Similarity=0.292 Sum_probs=68.5
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHH-HHHhhcCCCCCeEEEccccC-CCCCCCCCeeEEEeccchhh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDM-MKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~-a~~~~~~~~~v~~~~~d~~~-~~~~~~~~~D~v~~~~~l~~ 127 (252)
+++.+-+|+..=..=...+.+|.++++.||.++--++. .+.+. ..+...|+.. +. .-.++||.+.+..+++|
T Consensus 2 ~~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~~~dr~-----ssi~p~df~~~~~-~y~~~fD~~as~~siEh 75 (177)
T PF03269_consen 2 GKSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEEFRDRL-----SSILPVDFAKNWQ-KYAGSFDFAASFSSIEH 75 (177)
T ss_pred CceEEEEecCCchhhHHHHHcCCceEEEEeecccccCccccccc-----ccccHHHHHHHHH-Hhhccchhhheechhcc
Confidence 45788888886666666667788799999987532111 11111 1111222211 11 23467999999999999
Q ss_pred hcCC----CCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 128 LMCG----TNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 128 ~~~~----~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
...+ +.++..-...+.++.++||+||.+++..+..+
T Consensus 76 ~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~vPvG~ 115 (177)
T PF03269_consen 76 FGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLGVPVGT 115 (177)
T ss_pred ccccccCCCCCccccHHHHHHHHHhhccCCeEEEEeecCC
Confidence 8432 23333445677889999999999999876543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.014 Score=49.71 Aligned_cols=98 Identities=21% Similarity=0.261 Sum_probs=69.8
Q ss_pred hhCCCCCcEEEEccc-CcHhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 45 KYIPTSSRVLMVGCG-NALMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 45 ~~~~~~~~vLD~G~G-~G~~~~~l~~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..+.|+.+|+-+|+| .|..+..+++ .| .+|+++|.+++-.+.|++.-++ .++...-.+..+.-.+.||+|+..
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd----~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGAD----HVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCc----EEEEcCCchhhHHhHhhCcEEEEC
Confidence 446788999999987 5678888888 46 5999999999999999887432 444433111110112239999965
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
-. ...++...+.|++||.++++...
T Consensus 237 v~--------------~~~~~~~l~~l~~~G~~v~vG~~ 261 (339)
T COG1064 237 VG--------------PATLEPSLKALRRGGTLVLVGLP 261 (339)
T ss_pred CC--------------hhhHHHHHHHHhcCCEEEEECCC
Confidence 33 44578888999999999987755
|
|
| >KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.017 Score=46.99 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=66.2
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh-------cCCC-CCeEEEccccCCCC--CCCCC-eeE
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY-------EEIP-QLKYLQMDVRDMSF--FEDES-FDA 118 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~-------~~~~-~v~~~~~d~~~~~~--~~~~~-~D~ 118 (252)
..+||++|+|+|..+..++.....+|+..|....... .+.+. ...+ .+.+...+=...+. +..+. +|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~~~~-L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKVVEN-LKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhhHHH-HHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 4479999999998888888865558998888644322 22221 1111 23333222111110 12233 999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|++..++++. +....++..+..+|..+|.+++...-+
T Consensus 166 ilasDvvy~~-------~~~e~Lv~tla~ll~~~~~i~l~~~lr 202 (248)
T KOG2793|consen 166 ILASDVVYEE-------ESFEGLVKTLAFLLAKDGTIFLAYPLR 202 (248)
T ss_pred EEEeeeeecC-------CcchhHHHHHHHHHhcCCeEEEEEecc
Confidence 9999998877 667777777888888888766666433
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.005 Score=54.71 Aligned_cols=115 Identities=17% Similarity=0.275 Sum_probs=79.2
Q ss_pred hhHHHHHhhCCC-----CCcEEEEcccCcHhHHHHHHc-----CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccc
Q 025475 38 ALRPFVRKYIPT-----SSRVLMVGCGNALMSEDMVKD-----GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDV 105 (252)
Q Consensus 38 ~l~~~~~~~~~~-----~~~vLD~G~G~G~~~~~l~~~-----~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~ 105 (252)
++...+..+.+. ..+|+-+|+|.|-+.....+. .-.++++|+-+|.++...+..--. ..+|+++..|+
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~~DM 430 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIISSDM 430 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEeccc
Confidence 444555555432 237889999999887766554 133799999999998877764311 34799999999
Q ss_pred cCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 106 RDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 106 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
+++. .+..+.|++|+- .|..+.+. +--...|.-+...|||+|+.+=.
T Consensus 431 R~w~-ap~eq~DI~VSE-LLGSFGDN----ELSPECLDG~q~fLkpdgIsIP~ 477 (649)
T KOG0822|consen 431 RKWN-APREQADIIVSE-LLGSFGDN----ELSPECLDGAQKFLKPDGISIPS 477 (649)
T ss_pred cccC-CchhhccchHHH-hhccccCc----cCCHHHHHHHHhhcCCCceEccc
Confidence 9997 445789998863 23333222 33456778888999999886643
|
|
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0093 Score=47.77 Aligned_cols=51 Identities=14% Similarity=0.147 Sum_probs=40.7
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHH
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKM 90 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~ 90 (252)
+..+|....+++..|||.-||+|+.+....+.|- +++|+|+++..++.|++
T Consensus 181 ~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R-~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 181 IERLIKASTNPGDIVLDPFAGSGTTAVAAEELGR-RYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp HHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT--EEEEEESSHHHHHHHHH
T ss_pred HHHHHHhhhccceeeehhhhccChHHHHHHHcCC-eEEEEeCCHHHHHHhcC
Confidence 4556666677889999999999999999999865 89999999999998864
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.024 Score=47.67 Aligned_cols=106 Identities=18% Similarity=0.299 Sum_probs=69.8
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEE--EccccCCC--CCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYL--QMDVRDMS--FFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~--~~d~~~~~--~~~~~~~D~v 119 (252)
++++.+||-+|+|+ |..+...++. |..+|+.+|+++.-++.|++.-... .++.-. ..++.+.. ......+|+.
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~~Ga~~~~~~~~~~~~~~~~~~v~~~~g~~~~d~~ 246 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKKFGATVTDPSSHKSSPQELAELVEKALGKKQPDVT 246 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHHhCCeEEeeccccccHHHHHHHHHhhccccCCCeE
Confidence 56888999999996 7777777766 7889999999999999999832110 000000 01111110 0223458888
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
+.. .-.+..++.....++.||.++++.+..+..
T Consensus 247 ~dC-------------sG~~~~~~aai~a~r~gGt~vlvg~g~~~~ 279 (354)
T KOG0024|consen 247 FDC-------------SGAEVTIRAAIKATRSGGTVVLVGMGAEEI 279 (354)
T ss_pred EEc-------------cCchHHHHHHHHHhccCCEEEEeccCCCcc
Confidence 843 334455677778899999988888776543
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0068 Score=52.73 Aligned_cols=71 Identities=14% Similarity=0.248 Sum_probs=53.9
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEec
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
.|||+|.|||.++...+..|...+++++.=..|.+.|++.....+ +|+++...-++....+....|+++.-
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e 142 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVRE 142 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHh
Confidence 799999999999999999987789999999999999999876543 56666655555431223346666643
|
|
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.015 Score=48.69 Aligned_cols=53 Identities=17% Similarity=0.128 Sum_probs=45.8
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 93 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~ 93 (252)
..+|...-.++..|||.-||+|+.+....+.|- +++|+|++++.++.|+.++.
T Consensus 199 erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR-~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 199 KRIILASSNPGDIVLDPFAGSFTTGAVAKASGR-KFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHH
Confidence 445555567888999999999999999988864 99999999999999999974
|
|
| >PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine | Back alignment and domain information |
|---|
Probab=96.29 E-value=0.04 Score=47.29 Aligned_cols=116 Identities=18% Similarity=0.153 Sum_probs=62.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc------------C-----CCcEEEEeCCHHHHHHHHHhhc-------CCCC--CeEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD------------G-----YEDIVNIDISSVAIDMMKMKYE-------EIPQ--LKYL 101 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~------------~-----~~~v~~vD~s~~~i~~a~~~~~-------~~~~--v~~~ 101 (252)
+...+|+|+||..|..+..+... + .-+|+.-|+-..-....-+.+. ..++ +..+
T Consensus 15 ~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~gv 94 (334)
T PF03492_consen 15 PKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSGV 94 (334)
T ss_dssp TTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEEE
T ss_pred CCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEec
Confidence 44459999999999988877653 0 1267777874322222111111 1122 2334
Q ss_pred EccccCCCCCCCCCeeEEEeccchhhhcCCC---CC------------------h-----------hhHHHHHHHHHHcc
Q 025475 102 QMDVRDMSFFEDESFDAVIDKGTLDSLMCGT---NA------------------P-----------ISASQMLGEVSRLL 149 (252)
Q Consensus 102 ~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~---~~------------------~-----------~~~~~~l~~~~~~L 149 (252)
-+.+.+-. +++++.|++++..++|++..-+ .+ + .|...+|+.=.+=|
T Consensus 95 pgSFy~rL-fP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~EL 173 (334)
T PF03492_consen 95 PGSFYGRL-FPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEEL 173 (334)
T ss_dssp ES-TTS---S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred Cchhhhcc-CCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhhee
Confidence 45555544 7899999999999999984211 10 1 22344444445668
Q ss_pred cCCcEEEEEEcCChh
Q 025475 150 KPGGIYMLITYGDPK 164 (252)
Q Consensus 150 ~~gG~l~i~~~~~~~ 164 (252)
++||.++++..+.+.
T Consensus 174 v~GG~mvl~~~gr~~ 188 (334)
T PF03492_consen 174 VPGGRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEEEEE-ST
T ss_pred ccCcEEEEEEeeccc
Confidence 899999998876655
|
Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B. |
| >PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2 | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.014 Score=50.91 Aligned_cols=101 Identities=21% Similarity=0.270 Sum_probs=70.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--C--CCeEEEccccCCCCCCCCCeeEEEec
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--P--QLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~--~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
.+.+|||.=+|+|.=+...+.. +..+|++-|+|+++++..+++++.+ . .+++.+.|+..+-......||+|=..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~IDlD 128 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVIDLD 128 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEEE-
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEEeC
Confidence 4569999999999866666555 4569999999999999999997432 2 36777778766521256789999865
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. .-.+..+++.+.+.++.||.|.++..
T Consensus 129 P-----------fGSp~pfldsA~~~v~~gGll~vTaT 155 (377)
T PF02005_consen 129 P-----------FGSPAPFLDSALQAVKDGGLLCVTAT 155 (377)
T ss_dssp ------------SS--HHHHHHHHHHEEEEEEEEEEE-
T ss_pred C-----------CCCccHhHHHHHHHhhcCCEEEEecc
Confidence 2 25567789999999999999999763
|
1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: |
| >KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.013 Score=46.80 Aligned_cols=106 Identities=24% Similarity=0.307 Sum_probs=70.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHc--------CC--CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC-------CC
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD--------GY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-------FF 111 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~--------~~--~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~-------~~ 111 (252)
.-.|++|+++..|+++.-+.++ +. .++++||+-+= +-.+.|..+++|++... .|
T Consensus 41 gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~M---------aPI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 41 GVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPM---------APIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccC---------CccCceEEeecccCCHhHHHHHHHHh
Confidence 3458999999999999988775 11 13999998542 11246788899998753 15
Q ss_pred CCCCeeEEEeccc-----hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 112 EDESFDAVIDKGT-----LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 112 ~~~~~D~v~~~~~-----l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
..++.|+|+|.+. +|.+ -+--..+-+.+.++-...+|++||.++.--+....
T Consensus 112 ggekAdlVvcDGAPDvTGlHd~-DEy~Q~qLllaAl~i~t~Vlk~Gg~FVaKifRg~~ 168 (294)
T KOG1099|consen 112 GGEKADLVVCDGAPDVTGLHDL-DEYVQAQLLLAALNIATCVLKPGGSFVAKIFRGRD 168 (294)
T ss_pred CCCCccEEEeCCCCCccccccH-HHHHHHHHHHHHHHHHhheecCCCeeehhhhccCc
Confidence 5678999999874 4443 00001122355667778999999999876555443
|
|
| >KOG2920 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0018 Score=53.24 Aligned_cols=105 Identities=23% Similarity=0.300 Sum_probs=66.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh-------c--CCCC---CeEEEccccCCCCCCCC-
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY-------E--EIPQ---LKYLQMDVRDMSFFEDE- 114 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~-------~--~~~~---v~~~~~d~~~~~~~~~~- 114 (252)
-.+.+|||+|||.|-........+...+...|+|...++.-..-. . ...+ ..+....+.+......+
T Consensus 115 ~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~~ 194 (282)
T KOG2920|consen 115 FSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTER 194 (282)
T ss_pred ecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhccc
Confidence 367799999999999999988888668999999888763221110 0 0001 11111111122211123
Q ss_pred -CeeEEEeccchhhhcCCCCChhhHHHH-HHHHHHcccCCcEEEEEE
Q 025475 115 -SFDAVIDKGTLDSLMCGTNAPISASQM-LGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 -~~D~v~~~~~l~~~~~~~~~~~~~~~~-l~~~~~~L~~gG~l~i~~ 159 (252)
.||+|.+..+++.. ...+.. ......+++++|.++++.
T Consensus 195 ~~ydlIlsSetiy~~-------~~~~~~~~~~r~~l~~~D~~~~~aA 234 (282)
T KOG2920|consen 195 THYDLILSSETIYSI-------DSLAVLYLLHRPCLLKTDGVFYVAA 234 (282)
T ss_pred cchhhhhhhhhhhCc-------chhhhhHhhhhhhcCCccchhhhhh
Confidence 68999998888876 555555 666677889999887644
|
|
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0079 Score=48.53 Aligned_cols=76 Identities=17% Similarity=0.196 Sum_probs=46.6
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cC---C-----CCCeEEEccccCCCCCCCCCeeEE
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EE---I-----PQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~---~~---~-----~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.+|||.-+|-|..+..++..|. +|+++|-||-+....+.-+ .. . .+++++.+|..++...++.+||+|
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~-~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVV 155 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGC-KVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVV 155 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT---EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEE
T ss_pred CEEEECCCcchHHHHHHHccCC-eEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEE
Confidence 3899999999999999988876 8999999987654444322 11 1 268999999988643456899999
Q ss_pred Eeccchhh
Q 025475 120 IDKGTLDS 127 (252)
Q Consensus 120 ~~~~~l~~ 127 (252)
.+...+.+
T Consensus 156 Y~DPMFp~ 163 (234)
T PF04445_consen 156 YFDPMFPE 163 (234)
T ss_dssp EE--S---
T ss_pred EECCCCCC
Confidence 99887665
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >COG3129 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.0092 Score=47.65 Aligned_cols=89 Identities=19% Similarity=0.314 Sum_probs=56.2
Q ss_pred hhHHHHHhh---CC-CCCcEEEEcccCcHhHHHH--HHcCCCcEEEEeCCHHHHHHHHHhhcCCC----CCeEEEccccC
Q 025475 38 ALRPFVRKY---IP-TSSRVLMVGCGNALMSEDM--VKDGYEDIVNIDISSVAIDMMKMKYEEIP----QLKYLQMDVRD 107 (252)
Q Consensus 38 ~l~~~~~~~---~~-~~~~vLD~G~G~G~~~~~l--~~~~~~~v~~vD~s~~~i~~a~~~~~~~~----~v~~~~~d~~~ 107 (252)
.+..++.+- ++ ++.++||+|.|.-..--.+ .+.|+ +++|.|+++..++.|+..+..++ .+++....-.+
T Consensus 63 ~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgw-rfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~ 141 (292)
T COG3129 63 HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGW-RFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSD 141 (292)
T ss_pred HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecc-eeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcc
Confidence 344555443 22 5568999998864332222 22356 89999999999999999886543 34443322111
Q ss_pred -C---CCCCCCCeeEEEeccchhh
Q 025475 108 -M---SFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 108 -~---~~~~~~~~D~v~~~~~l~~ 127 (252)
+ ..-..+.||+++|+..+|.
T Consensus 142 ~if~giig~nE~yd~tlCNPPFh~ 165 (292)
T COG3129 142 AIFNGIIGKNERYDATLCNPPFHD 165 (292)
T ss_pred ccccccccccceeeeEecCCCcch
Confidence 1 1023578999999999874
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.034 Score=44.98 Aligned_cols=54 Identities=11% Similarity=0.185 Sum_probs=45.4
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
..++.....++..|||.-||+|+.+....+.|. +++|+|+++...+.+.+++..
T Consensus 154 ~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r-~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 154 QPLIESFTHPNAIVLDPFAGSGSTCVAALQSGR-RYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred HHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCC-CEEEEecCHHHHHHHHHHHHH
Confidence 345555566888999999999999999988865 899999999999999888743
|
|
| >KOG1227 consensus Putative methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.0052 Score=50.86 Aligned_cols=73 Identities=11% Similarity=0.079 Sum_probs=56.1
Q ss_pred CCCCcEEEEcccCcHhHH-HHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSE-DMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~-~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..+..|.|+=+|.|.++. .+...|...|+++|.+|.+++..++.++.+. +..++.+|-+... +....|-|...
T Consensus 193 c~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~--~~~~AdrVnLG 269 (351)
T KOG1227|consen 193 CDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPK--PRLRADRVNLG 269 (351)
T ss_pred cccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccC--ccccchheeec
Confidence 345789999999999999 7778888899999999999999999875432 3445555555553 56677887753
|
|
| >PLN02668 indole-3-acetate carboxyl methyltransferase | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.057 Score=47.01 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=37.3
Q ss_pred CCCCCeeEEEeccchhhhcCCC---CC-----------------h-----------hhHHHHHHHHHHcccCCcEEEEEE
Q 025475 111 FEDESFDAVIDKGTLDSLMCGT---NA-----------------P-----------ISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~---~~-----------------~-----------~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++.++.+++++..++|++..-+ .+ + .|...+|+.=.+-|.|||.++++.
T Consensus 158 fP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~Ra~ELvpGG~mvl~~ 237 (386)
T PLN02668 158 FPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRARAQEMKRGGAMFLVC 237 (386)
T ss_pred cCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEE
Confidence 7889999999999999983211 00 0 123444444556789999999988
Q ss_pred cCChh
Q 025475 160 YGDPK 164 (252)
Q Consensus 160 ~~~~~ 164 (252)
.+++.
T Consensus 238 ~Gr~~ 242 (386)
T PLN02668 238 LGRTS 242 (386)
T ss_pred ecCCC
Confidence 77653
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.12 Score=46.73 Aligned_cols=99 Identities=18% Similarity=0.340 Sum_probs=64.5
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-----------CC-C----
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-----------MS-F---- 110 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-----------~~-~---- 110 (252)
++.+|+-+|||. |..+...+.. |. +|+++|.++.-++.++..- .+++..|..+ .. .
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lGA-~V~a~D~~~~rle~aeslG-----A~~v~i~~~e~~~~~~gya~~~s~~~~~~ 237 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLGA-IVRAFDTRPEVAEQVESMG-----AEFLELDFEEEGGSGDGYAKVMSEEFIKA 237 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC-----CeEEEeccccccccccchhhhcchhHHHH
Confidence 577999999996 7777777766 66 8999999999999888742 1222222111 10 0
Q ss_pred ----CCC--CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 111 ----FED--ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 111 ----~~~--~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+.+ ..+|+|+..-.. +....+..+.+++.+.+++||.++....
T Consensus 238 ~~~~~~~~~~gaDVVIetag~-------pg~~aP~lit~~~v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 238 EMALFAEQAKEVDIIITTALI-------PGKPAPKLITAEMVASMKPGSVIVDLAA 286 (509)
T ss_pred HHHHHHhccCCCCEEEECCCC-------CcccCcchHHHHHHHhcCCCCEEEEEcc
Confidence 011 358999964321 1212333345889999999999887765
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.032 Score=48.21 Aligned_cols=99 Identities=19% Similarity=0.282 Sum_probs=67.1
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcccc-C----CCCCCC-CCeeEEE
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVR-D----MSFFED-ESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~-~----~~~~~~-~~~D~v~ 120 (252)
++.+|+-+|||+ |.++..+++. |..+++++|.++.-++.|++.... ..+.-... + ...... ..+|+++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~----~~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGA----DVVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCC----eEeecCccccHHHHHHHHhCCCCCCEEE
Confidence 344899999996 8887777766 677999999999999999986422 11111111 0 100122 3699999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
-.-. ....+..+.+++++||.+.+.....+.
T Consensus 244 e~~G-------------~~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 244 EAVG-------------SPPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ECCC-------------CHHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 6322 233788899999999999887765433
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.069 Score=45.85 Aligned_cols=95 Identities=18% Similarity=0.288 Sum_probs=60.0
Q ss_pred CCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE---ccccCCCCCCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ---MDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~---~d~~~~~~~~~~~~D~v~~~ 122 (252)
.++.+||-.||| .|..+..+++. |..+++++|.+++-++.+++.-.. .++. .++.+.. ...+.+|+|+..
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~~-~~~g~~D~vid~ 242 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD----KLVNPQNDDLDHYK-AEKGYFDVSFEV 242 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc----EEecCCcccHHHHh-ccCCCCCEEEEC
Confidence 356789989986 36676666665 555799999999988888764211 1111 1122221 112358988853
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
-. -...++.+.++|++||.+++...
T Consensus 243 ~G-------------~~~~~~~~~~~l~~~G~iv~~G~ 267 (343)
T PRK09880 243 SG-------------HPSSINTCLEVTRAKGVMVQVGM 267 (343)
T ss_pred CC-------------CHHHHHHHHHHhhcCCEEEEEcc
Confidence 11 12356677788999999888764
|
|
| >PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.041 Score=46.43 Aligned_cols=77 Identities=9% Similarity=0.154 Sum_probs=56.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCC----C-CCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF----F-EDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~----~-~~~~~D~v~ 120 (252)
.++..++|.--|.|..+..+++. +..+++|+|.++.+++.+++++... +++.++..++.++.. . ....+|.|+
T Consensus 19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~l~~~l~~~~~~~~~dgiL 98 (310)
T PF01795_consen 19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSNLDEYLKELNGINKVDGIL 98 (310)
T ss_dssp -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGGHHHHHHHTTTTS-EEEEE
T ss_pred CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHHHHHHHHHccCCCccCEEE
Confidence 46669999999999999999987 3579999999999999999988653 579999999887642 2 335789988
Q ss_pred eccc
Q 025475 121 DKGT 124 (252)
Q Consensus 121 ~~~~ 124 (252)
+...
T Consensus 99 ~DLG 102 (310)
T PF01795_consen 99 FDLG 102 (310)
T ss_dssp EE-S
T ss_pred Eccc
Confidence 8654
|
The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A. |
| >PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.038 Score=46.30 Aligned_cols=107 Identities=21% Similarity=0.273 Sum_probs=75.7
Q ss_pred CcEEEEcccCcHhHHHHHHc-------C-----C---------CcEEEEeCCHH--HHHHHHHhhcCC------------
Q 025475 51 SRVLMVGCGNALMSEDMVKD-------G-----Y---------EDIVNIDISSV--AIDMMKMKYEEI------------ 95 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~-------~-----~---------~~v~~vD~s~~--~i~~a~~~~~~~------------ 95 (252)
.+||-||.|.|.-...++.. . . ..++.||+.+. .+......+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 59999999998754444332 0 1 27999999864 455555443221
Q ss_pred ----C---CCeEEEccccCCCC------CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 96 ----P---QLKYLQMDVRDMSF------FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 96 ----~---~v~~~~~d~~~~~~------~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+ +++|.+.|+..+.. +...+.++|...++++-++... .....++|.++-..+++|..|+|++
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s--~~kTt~FLl~Lt~~~~~GslLLVvD 242 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTS--ISKTTKFLLRLTDICPPGSLLLVVD 242 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcC--hHHHHHHHHHHHhhcCCCcEEEEEc
Confidence 1 57899999887752 1113578888888888764443 4677899999999999999999987
|
|
| >COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.084 Score=44.06 Aligned_cols=76 Identities=12% Similarity=0.110 Sum_probs=60.1
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCC----CCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF----FEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~----~~~~~~D~v~ 120 (252)
.++...+|.--|.|..+..+++.. .++++++|.++.+++.|++.+.. .+++.+++.++.++.. ...+.+|-|+
T Consensus 22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~l~~~l~~~~i~~vDGiL 101 (314)
T COG0275 22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFANLAEALKELGIGKVDGIL 101 (314)
T ss_pred CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHHHHHHHHhcCCCceeEEE
Confidence 466799999999999999999985 45799999999999999999866 3488999988876532 2234667776
Q ss_pred ecc
Q 025475 121 DKG 123 (252)
Q Consensus 121 ~~~ 123 (252)
...
T Consensus 102 ~DL 104 (314)
T COG0275 102 LDL 104 (314)
T ss_pred Eec
Confidence 554
|
|
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.0079 Score=42.33 Aligned_cols=41 Identities=22% Similarity=0.396 Sum_probs=30.7
Q ss_pred CeeEEEeccc--hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 115 SFDAVIDKGT--LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 115 ~~D~v~~~~~--l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
.||+|+|..+ +-|+ .-.++.+..++++++++|+|||.+++-
T Consensus 1 ~yDvilclSVtkWIHL---n~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHL---NWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHH---HHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEe---cCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 4899999776 3344 114556789999999999999999873
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.025 Score=48.02 Aligned_cols=71 Identities=15% Similarity=0.259 Sum_probs=55.9
Q ss_pred cEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCeeEEEeccchhhh
Q 025475 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~~l~~~ 128 (252)
+++|+-||.|.+...+.+.|...+.++|+++.+.+.-+.++. .....|+.+... ++. .+|+++...++..+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~-----~~~~~Di~~~~~~~l~~-~~D~l~ggpPCQ~f 74 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP-----EVICGDITEIDPSDLPK-DVDLLIGGPPCQGF 74 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT-----EEEESHGGGCHHHHHHH-T-SEEEEE---TTT
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc-----ccccccccccccccccc-cceEEEeccCCceE
Confidence 689999999999999999997789999999999999999884 788889988751 333 59999998776654
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.09 Score=46.01 Aligned_cols=107 Identities=20% Similarity=0.329 Sum_probs=67.0
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-----CCCC-CCCCeeE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-----MSFF-EDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-----~~~~-~~~~~D~ 118 (252)
+.++.+||..|||. |..+..+++. |..+++++|.+++..+.+++... ..++...-.+ .... ....+|+
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~----~~vi~~~~~~~~~~~l~~~~~~~~~D~ 257 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLG----AETINFEEVDDVVEALRELTGGRGPDV 257 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC----cEEEcCCcchHHHHHHHHHcCCCCCCE
Confidence 45677999999987 8888888776 44469999999999998887631 1222111110 1001 2336898
Q ss_pred EEeccchh-----------hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 119 VIDKGTLD-----------SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~-----------~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+..-.-+ |.++ +..+....++++.+.|+++|.+++...
T Consensus 258 vld~vg~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 258 CIDAVGMEAHGSPLHKAEQALLK---LETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred EEECCCCcccccccccccccccc---cccCchHHHHHHHHHhccCCEEEEEcC
Confidence 88742111 1100 112335578889999999999988753
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >TIGR00675 dcm DNA-methyltransferase (dcm) | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.048 Score=46.46 Aligned_cols=72 Identities=13% Similarity=0.146 Sum_probs=55.8
Q ss_pred EEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 53 VLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 53 vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
|+|+-||.|.+..-+.+.|..-+.++|+++.+.+..+.++.. .++.+|+.++....-..+|+++....+..+
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~----~~~~~Di~~~~~~~~~~~dvl~gg~PCq~f 72 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN----KVPFGDITKISPSDIPDFDILLGGFPCQPF 72 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC----CCCccChhhhhhhhCCCcCEEEecCCCccc
Confidence 589999999999999988875677899999999999988743 445678877641112358999988776654
|
All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.038 Score=46.35 Aligned_cols=63 Identities=14% Similarity=0.069 Sum_probs=42.7
Q ss_pred CCeEEEccccCC-CCCCCCCeeEEEeccchhhh-cCCCC--------ChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 97 QLKYLQMDVRDM-SFFEDESFDAVIDKGTLDSL-MCGTN--------APISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 97 ~v~~~~~d~~~~-~~~~~~~~D~v~~~~~l~~~-~~~~~--------~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.+++++|..+. ..++++++|+|+++..+.-- ..... ...-....+.+++++||+||.+++..
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~~ 80 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIMN 80 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 457888998874 22677899999998875320 00000 00223578899999999999998854
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.025 Score=47.82 Aligned_cols=79 Identities=15% Similarity=0.169 Sum_probs=60.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHH-------HHhhcCCC----CCeEEEccccCCCCCCCCC
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM-------KMKYEEIP----QLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a-------~~~~~~~~----~v~~~~~d~~~~~~~~~~~ 115 (252)
+.+|..|+|.-.|||.+....+.-|. -|+|.||+-.+++.. +.++++.+ -+.+..+|..+.+-.....
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa-~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~ 284 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGA-YVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLK 284 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcc-eeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhcce
Confidence 57889999999999999999998875 899999998888743 23343332 3567788888766233567
Q ss_pred eeEEEeccchh
Q 025475 116 FDAVIDKGTLD 126 (252)
Q Consensus 116 ~D~v~~~~~l~ 126 (252)
||.|+|..++.
T Consensus 285 fDaIvcDPPYG 295 (421)
T KOG2671|consen 285 FDAIVCDPPYG 295 (421)
T ss_pred eeEEEeCCCcc
Confidence 99999987643
|
|
| >KOG2078 consensus tRNA modification enzyme [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.029 Score=48.75 Aligned_cols=76 Identities=20% Similarity=0.271 Sum_probs=61.0
Q ss_pred eeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---C-CCeEEEccccC
Q 025475 32 WYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---P-QLKYLQMDVRD 107 (252)
Q Consensus 32 ~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~-~v~~~~~d~~~ 107 (252)
|-.++....+.+....+++..|.|+.||.|-++..++..+ +.|++-|+++++++..+.+++-+ + ++++...|+.+
T Consensus 232 WnsRL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~-crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~ 310 (495)
T KOG2078|consen 232 WNSRLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKG-CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKD 310 (495)
T ss_pred eeccchhHHHHHhhccCCcchhhhhhcCcCccccchhhcC-cEEEecCCCHHHHHHHHHhccccccchhheeeecccHHH
Confidence 5555556666777778899999999999999999999987 59999999999999999988532 2 46777766654
Q ss_pred C
Q 025475 108 M 108 (252)
Q Consensus 108 ~ 108 (252)
+
T Consensus 311 F 311 (495)
T KOG2078|consen 311 F 311 (495)
T ss_pred H
Confidence 3
|
|
| >COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.13 Score=44.09 Aligned_cols=99 Identities=18% Similarity=0.204 Sum_probs=71.5
Q ss_pred CCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 50 SSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
..+|+|.-||+|.=+...+.. +..+++.-|+||.+++.+++++..+ .+...+..|...+-......||+|=...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~~~~~fd~IDiDP--- 129 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHELHRAFDVIDIDP--- 129 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHhcCCCccEEecCC---
Confidence 568999999999876666655 4448999999999999999998643 2455555665544212236788886542
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.-.+.-++..+.+.++.||+|.++.
T Consensus 130 --------FGSPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 130 --------FGSPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred --------CCCCchHHHHHHHHhhcCCEEEEEe
Confidence 2444567777888888999998865
|
|
| >COG4301 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.59 Score=38.04 Aligned_cols=105 Identities=21% Similarity=0.269 Sum_probs=72.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhh-cCCCC--CeEEEccccCC-CCCCCCCe-eE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKY-EEIPQ--LKYLQMDVRDM-SFFEDESF-DA 118 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~----~-~~~v~~vD~s~~~i~~a~~~~-~~~~~--v~~~~~d~~~~-~~~~~~~~-D~ 118 (252)
.+...+|+|+|+..-+..+... + ..+++.+|+|...++..-+.+ ...+. +.-+++|.... ...+..+- =.
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHHHHhcccCCCeEEE
Confidence 3568999999999877777654 3 458999999999887655544 34453 44555665432 11222222 23
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
++...++..+ ++.....++..+...|+||-++++.
T Consensus 158 ~flGStlGN~-----tp~e~~~Fl~~l~~a~~pGd~~LlG 192 (321)
T COG4301 158 VFLGSTLGNL-----TPGECAVFLTQLRGALRPGDYFLLG 192 (321)
T ss_pred EEecccccCC-----ChHHHHHHHHHHHhcCCCcceEEEe
Confidence 3334456666 8889999999999999999988774
|
|
| >PRK10458 DNA cytosine methylase; Provisional | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.2 Score=44.89 Aligned_cols=79 Identities=13% Similarity=0.131 Sum_probs=58.7
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC----------------CC
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF----------------ED 113 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~----------------~~ 113 (252)
..+++|+-||.|.+..-+...|...+.++|+++.+.+.-+.++...+.......|+.++... .-
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~~~~~ 167 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCDPATHRFNEDIRDITLSHKEGVSDEEAAEHIRQHI 167 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCCCccceeccChhhCccccccccchhhhhhhhhccC
Confidence 34999999999999999988887678999999999998888874333445556677665310 01
Q ss_pred CCeeEEEeccchhhh
Q 025475 114 ESFDAVIDKGTLDSL 128 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~ 128 (252)
...|+++...++..+
T Consensus 168 p~~DvL~gGpPCQ~F 182 (467)
T PRK10458 168 PDHDVLLAGFPCQPF 182 (467)
T ss_pred CCCCEEEEcCCCCcc
Confidence 257999988776644
|
|
| >TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.6 Score=38.61 Aligned_cols=112 Identities=14% Similarity=0.186 Sum_probs=72.0
Q ss_pred HHHhhCCC-CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCC-HHHHHHHHHhhcC-----CCCCeEEEccccC-CCC---
Q 025475 42 FVRKYIPT-SSRVLMVGCGNALMSEDMVKDGYEDIVNIDIS-SVAIDMMKMKYEE-----IPQLKYLQMDVRD-MSF--- 110 (252)
Q Consensus 42 ~~~~~~~~-~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s-~~~i~~a~~~~~~-----~~~v~~~~~d~~~-~~~--- 110 (252)
.+.+.+.. ...|+.+|||-=.-...+... . .+..+|++ |+.++.-++.+.. ..+.+++.+|+.+ +..
T Consensus 73 ~i~~~~~~g~~qvV~LGaGlDTr~~Rl~~~-~-~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~ 150 (260)
T TIGR00027 73 FLLAAVAAGIRQVVILGAGLDTRAYRLPWP-D-GTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALA 150 (260)
T ss_pred HHHHHHhcCCcEEEEeCCccccHHHhcCCC-C-CCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHH
Confidence 34444432 337999999975555444322 1 34455555 5566655555542 2467888999862 110
Q ss_pred ---CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 111 ---FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 111 ---~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+.....-++++-+++.++ +.+...++++.+.+...+|+.+++-..
T Consensus 151 ~~gfd~~~ptl~i~EGvl~YL-----~~~~v~~ll~~i~~~~~~gs~l~~d~~ 198 (260)
T TIGR00027 151 AAGFDPTAPTAWLWEGLLMYL-----TEEAVDALLAFIAELSAPGSRLAFDYV 198 (260)
T ss_pred hCCCCCCCCeeeeecchhhcC-----CHHHHHHHHHHHHHhCCCCcEEEEEec
Confidence 222345578888899999 889999999999998888888776443
|
This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants. |
| >COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.16 Score=39.54 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=71.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC------CCCCCee
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF------FEDESFD 117 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~----~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~------~~~~~~D 117 (252)
.+..|+++|+-.|..+.+++.. | ..+|+++|++-..++.+-.. .+.|.+++++-.++.. ...+.--
T Consensus 69 ~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e---~p~i~f~egss~dpai~eqi~~~~~~y~k 145 (237)
T COG3510 69 QPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE---VPDILFIEGSSTDPAIAEQIRRLKNEYPK 145 (237)
T ss_pred CCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc---CCCeEEEeCCCCCHHHHHHHHHHhcCCCc
Confidence 3458999999988877777664 5 35999999986654433332 3689999999887641 2233334
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.++-..-|+. +..-+-++-+.++|..|-++++-+
T Consensus 146 IfvilDsdHs~-------~hvLAel~~~~pllsaG~Y~vVeD 180 (237)
T COG3510 146 IFVILDSDHSM-------EHVLAELKLLAPLLSAGDYLVVED 180 (237)
T ss_pred EEEEecCCchH-------HHHHHHHHHhhhHhhcCceEEEec
Confidence 55555666666 777778888889999999988865
|
|
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.24 Score=46.01 Aligned_cols=97 Identities=21% Similarity=0.321 Sum_probs=60.3
Q ss_pred cEEEEcccCcHhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhh------cC-----CCCCeEEEccccCCCCCC---
Q 025475 52 RVLMVGCGNALMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKY------EE-----IPQLKYLQMDVRDMSFFE--- 112 (252)
Q Consensus 52 ~vLD~G~G~G~~~~~l~~~----~-~~~v~~vD~s~~~i~~a~~~~------~~-----~~~v~~~~~d~~~~~~~~--- 112 (252)
.|+-+|+|.|-+....++. + ..++++||-++.++...+.+. .+ .+.|+++..|++.+. .+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~-~pe~~ 781 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIA-TAAEN 781 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccc-ccccc
Confidence 6899999999887776654 3 348999999966433333222 11 125899999999984 22
Q ss_pred --------CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccC----CcE
Q 025475 113 --------DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP----GGI 154 (252)
Q Consensus 113 --------~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~----gG~ 154 (252)
-+++|+||+ ..|-.+.+.+-+|+. |.-+.+.||+ +|+
T Consensus 782 ~s~~~P~~~gKaDIVVS-ELLGSFGDNELSPEC----LDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 782 GSLTLPADFGLCDLIVS-ELLGSLGDNELSPEC----LEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred ccccccccccccceehH-hhhcccccccCCHHH----HHHHHHhhhhhcccccc
Confidence 136899986 233333333344454 4445555554 665
|
|
| >COG1255 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.89 Score=32.32 Aligned_cols=98 Identities=14% Similarity=0.274 Sum_probs=63.0
Q ss_pred HHHHHhhCCCCCcEEEEcccCc-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCC-CCCee
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNA-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-DESFD 117 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~-~~~~D 117 (252)
...+.....++ +|.++|.|.= ..+..++++|+ .++++|+++. .+. ..++++.-|+++.. .. =...|
T Consensus 5 a~~iAre~~~g-kVvEVGiG~~~~VA~~L~e~g~-dv~atDI~~~---~a~------~g~~~v~DDitnP~-~~iY~~A~ 72 (129)
T COG1255 5 AEYIARENARG-KVVEVGIGFFLDVAKRLAERGF-DVLATDINEK---TAP------EGLRFVVDDITNPN-ISIYEGAD 72 (129)
T ss_pred HHHHHHHhcCC-cEEEEccchHHHHHHHHHHcCC-cEEEEecccc---cCc------ccceEEEccCCCcc-HHHhhCcc
Confidence 33444433334 9999999974 46777778885 9999999887 111 25789999998864 21 13478
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|.+. +++..+...+-.+.+.++ ..+++....
T Consensus 73 lIYSi----------RpppEl~~~ildva~aVg--a~l~I~pL~ 104 (129)
T COG1255 73 LIYSI----------RPPPELQSAILDVAKAVG--APLYIKPLT 104 (129)
T ss_pred ceeec----------CCCHHHHHHHHHHHHhhC--CCEEEEecC
Confidence 88763 344566666666666544 356665543
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.17 Score=43.32 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=60.5
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCeeEEEeccchhh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDKGTLDS 127 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~~l~~ 127 (252)
..+++|+-||.|.+..-+...|+.-+.++|+++.+++.-+.++.. ..++..|+..... +....+|+++....+..
T Consensus 3 ~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~---~~~~~~di~~~~~~~~~~~~~DvligGpPCQ~ 79 (328)
T COG0270 3 KMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH---GDIILGDIKELDGEALRKSDVDVLIGGPPCQD 79 (328)
T ss_pred CceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC---CceeechHhhcChhhccccCCCEEEeCCCCcc
Confidence 358999999999999999999977899999999999999988753 4667777776541 11117899999887776
Q ss_pred h
Q 025475 128 L 128 (252)
Q Consensus 128 ~ 128 (252)
+
T Consensus 80 F 80 (328)
T COG0270 80 F 80 (328)
T ss_pred h
Confidence 5
|
|
| >COG2933 Predicted SAM-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.2 Score=41.06 Aligned_cols=73 Identities=14% Similarity=0.106 Sum_probs=54.0
Q ss_pred hhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 45 KYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 45 ~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
+++.+++...|+|+-.|.++..+.+++- .|++||-.+-+-. +.+.+.|+-...|.+.+. ......|-.+|..+
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr~m-~V~aVDng~ma~s-----L~dtg~v~h~r~DGfk~~-P~r~~idWmVCDmV 279 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKRNM-RVYAVDNGPMAQS-----LMDTGQVTHLREDGFKFR-PTRSNIDWMVCDMV 279 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhcce-EEEEeccchhhhh-----hhcccceeeeeccCcccc-cCCCCCceEEeehh
Confidence 4467899999999999999999999965 8999998663322 223356778888888776 23456777777543
|
|
| >KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.33 Score=42.96 Aligned_cols=108 Identities=12% Similarity=0.094 Sum_probs=68.9
Q ss_pred CcEEEEcccCcH--hHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEc--cccC--CCCCCCCCeeEEEec
Q 025475 51 SRVLMVGCGNAL--MSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQM--DVRD--MSFFEDESFDAVIDK 122 (252)
Q Consensus 51 ~~vLD~G~G~G~--~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~--d~~~--~~~~~~~~~D~v~~~ 122 (252)
..++|+|+|.|. .+...+..+ ...++.||.+..|.........+.. .-..... .+.+ ++......||+|++.
T Consensus 202 d~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~~g~~~v~~~~~~r~~~pi~~~~~yDlvi~a 281 (491)
T KOG2539|consen 202 DLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSHIGEPIVRKLVFHRQRLPIDIKNGYDLVICA 281 (491)
T ss_pred HHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhhcCchhccccchhcccCCCCcccceeeEEee
Confidence 378888888654 444444444 5589999999999998888775411 1111111 1222 231344569999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHH-HcccCCcEEEEEEcCC
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVS-RLLKPGGIYMLITYGD 162 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~-~~L~~gG~l~i~~~~~ 162 (252)
+.++++ .+...+....++.+ ....+|+.+++++.+.
T Consensus 282 h~l~~~----~s~~~R~~v~~s~~r~~~r~g~~lViIe~g~ 318 (491)
T KOG2539|consen 282 HKLHEL----GSKFSRLDVPESLWRKTDRSGYFLVIIEKGT 318 (491)
T ss_pred eeeecc----CCchhhhhhhHHHHHhccCCCceEEEEecCC
Confidence 998887 34445555555555 4557889999988553
|
|
| >PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.9 Score=34.84 Aligned_cols=107 Identities=18% Similarity=0.214 Sum_probs=65.3
Q ss_pred EEcccCcHhHHHHHHc-C-CCcEEEEeCCHH--HHHHHH---Hhh---cCCCCCeEEEccccCCCC---CCCCCeeEEEe
Q 025475 55 MVGCGNALMSEDMVKD-G-YEDIVNIDISSV--AIDMMK---MKY---EEIPQLKYLQMDVRDMSF---FEDESFDAVID 121 (252)
Q Consensus 55 D~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~--~i~~a~---~~~---~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~ 121 (252)
-||=|.-+++..+++. + ...+++.-+... ..+... .++ +..+..-....|++++.. .....||.|+.
T Consensus 2 lvGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 2 LVGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCcccccccccCCcCCEEEE
Confidence 4677777888888877 3 446666555432 222211 222 122223345567776643 24678999999
Q ss_pred ccchhhhcCCC--------CChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 122 KGTLDSLMCGT--------NAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 122 ~~~l~~~~~~~--------~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+++..- .+. .+..-+..++..+..+|+++|.+.|+-...+
T Consensus 82 NFPH~G--~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~ 129 (166)
T PF10354_consen 82 NFPHVG--GGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQ 129 (166)
T ss_pred eCCCCC--CCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 877442 110 1234568889999999999999998876543
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.085 Score=42.69 Aligned_cols=60 Identities=15% Similarity=0.233 Sum_probs=40.5
Q ss_pred eEEEccccCC-CCCCCCCeeEEEeccchhh-hc-C-C-----CCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 99 KYLQMDVRDM-SFFEDESFDAVIDKGTLDS-LM-C-G-----TNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 99 ~~~~~d~~~~-~~~~~~~~D~v~~~~~l~~-~~-~-~-----~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
++.++|..+. ..++++++|+|+...++.- .. . + ....+-....+.+++|+|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 5677887664 2378899999999987641 00 0 0 001123467889999999999988764
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.057 Score=37.86 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=26.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeC
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDI 80 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~ 80 (252)
+....+|+|||+|.+.-.|.+.|+ .=.|+|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~EGy-~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSEGY-PGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhCCC-Ccccccc
Confidence 345899999999999999999886 6677886
|
; GO: 0008168 methyltransferase activity |
| >PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.11 Score=45.25 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=54.7
Q ss_pred CCCeEEEccccCCCC-CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 96 PQLKYLQMDVRDMSF-FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 96 ~~v~~~~~d~~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.+++++..++.+... .+++++|.++.....+++ +++...+.++++.+.++|||+++.-+...+
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm-----~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~~ 338 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWM-----DPEQLNEEWQELARTARPGARVLWRSAAVP 338 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhC-----CHHHHHHHHHHHHHHhCCCCEEEEeeCCCC
Confidence 578999999988642 467899999999999999 889999999999999999999999775543
|
This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length. |
| >PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre | Back alignment and domain information |
|---|
Probab=93.87 E-value=1.1 Score=34.16 Aligned_cols=108 Identities=14% Similarity=0.103 Sum_probs=71.0
Q ss_pred hhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---CCC
Q 025475 38 ALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---EDE 114 (252)
Q Consensus 38 ~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---~~~ 114 (252)
.+.+.+.+......+|+-+||=+-.....-......+++..|++...-... ++ .++.-|......+ -.+
T Consensus 14 ~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~-------~~-~F~fyD~~~p~~~~~~l~~ 85 (162)
T PF10237_consen 14 FLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG-------GD-EFVFYDYNEPEELPEELKG 85 (162)
T ss_pred HHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC-------Cc-ceEECCCCChhhhhhhcCC
Confidence 345555554456679999999775544443112345899999987543211 12 4555565543222 257
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+||+|++..++ + +.+-..++...+.-++++++.+++.+.
T Consensus 86 ~~d~vv~DPPF--l-----~~ec~~k~a~ti~~L~k~~~kii~~Tg 124 (162)
T PF10237_consen 86 KFDVVVIDPPF--L-----SEECLTKTAETIRLLLKPGGKIILCTG 124 (162)
T ss_pred CceEEEECCCC--C-----CHHHHHHHHHHHHHHhCccceEEEecH
Confidence 89999999887 3 447777888888888899999998874
|
This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ). |
| >PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.35 Score=39.73 Aligned_cols=44 Identities=18% Similarity=0.296 Sum_probs=35.1
Q ss_pred CcEEEEcccCcHhHHHHHHc---------CCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 51 SRVLMVGCGNALMSEDMVKD---------GYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~---------~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
.+|+|+|+|+|.++..+++. ...+++.||+|+.+.+.-++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 59999999999999998875 124799999999998888887754
|
; PDB: 4F3N_A 1ZKD_B. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.8 Score=33.55 Aligned_cols=104 Identities=16% Similarity=0.262 Sum_probs=63.6
Q ss_pred cEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CC------------CCeEEEccccCCCC
Q 025475 52 RVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IP------------QLKYLQMDVRDMSF 110 (252)
Q Consensus 52 ~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~------------~v~~~~~d~~~~~~ 110 (252)
+|.-+|+|+ | .++..++..|. +|+.+|.+++.++.+++++.. .+ +++ ...|+.+.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~-- 76 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEA-- 76 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGG--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHH--
Confidence 366788885 4 45566666676 999999999999888776532 11 222 12222222
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
. ..|+|+-.- ..+.+-.++++.++.+++.|+-.+.-.+-..+.......
T Consensus 77 -~--~adlViEai--------~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl~i~~la~~ 125 (180)
T PF02737_consen 77 -V--DADLVIEAI--------PEDLELKQELFAELDEICPPDTILASNTSSLSISELAAA 125 (180)
T ss_dssp -C--TESEEEE-S---------SSHHHHHHHHHHHHCCS-TTSEEEE--SSS-HHHHHTT
T ss_pred -h--hhheehhhc--------cccHHHHHHHHHHHHHHhCCCceEEecCCCCCHHHHHhc
Confidence 1 689988542 233478899999999999999888777666555544444
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG1565 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.32 Score=41.74 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=36.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHc---------CCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD---------GYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~---------~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
.+..++|+|+|+|.++..++.. ...++..|++|+...+.=++.++.
T Consensus 77 ~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~ 131 (370)
T COG1565 77 APLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKA 131 (370)
T ss_pred CCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhc
Confidence 3458999999999999988764 145899999999987776666643
|
|
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.63 Score=39.93 Aligned_cols=94 Identities=16% Similarity=0.267 Sum_probs=59.2
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
..++.+||-+|||. |.++..++.. |..+++++|.++.-++.++. . ... .. . .+.. ....+|+|+..-
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~---~~~-~~-~--~~~~--~~~g~d~viD~~ 230 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-A---DET-YL-I--DDIP--EDLAVDHAFECV 230 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-c---Cce-ee-h--hhhh--hccCCcEEEECC
Confidence 35677999999874 6666666553 45589999999887777764 2 111 11 1 1111 112489888532
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. .......+....++|+++|.+++...
T Consensus 231 G----------~~~~~~~~~~~~~~l~~~G~iv~~G~ 257 (341)
T cd08237 231 G----------GRGSQSAINQIIDYIRPQGTIGLMGV 257 (341)
T ss_pred C----------CCccHHHHHHHHHhCcCCcEEEEEee
Confidence 1 01123467788899999999887664
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins | Back alignment and domain information |
|---|
Probab=93.29 E-value=1.3 Score=36.37 Aligned_cols=117 Identities=19% Similarity=0.195 Sum_probs=66.8
Q ss_pred hHHHHHhhC--CCCCcEEEEcccCcHhHHHHHH---c-C--CCcEEEEeCC--------------------------HHH
Q 025475 39 LRPFVRKYI--PTSSRVLMVGCGNALMSEDMVK---D-G--YEDIVNIDIS--------------------------SVA 84 (252)
Q Consensus 39 l~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~---~-~--~~~v~~vD~s--------------------------~~~ 84 (252)
+...+...+ .-+..|+|+||-.|..+..++. . + ..++++.|.= ...
T Consensus 62 L~~~~~~v~~~~vpGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s 141 (248)
T PF05711_consen 62 LYQAVEQVLAEDVPGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVS 141 (248)
T ss_dssp HHHHHHHCCHTTS-SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHH
T ss_pred HHHHHHHHHhcCCCeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccC
Confidence 444444443 2334899999998876654432 2 2 3468887741 113
Q ss_pred HHHHHHhhcCC----CCCeEEEccccCC-CCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 85 IDMMKMKYEEI----PQLKYLQMDVRDM-SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 85 i~~a~~~~~~~----~~v~~~~~d~~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+..++++... ++++++.+.+.+. +..+..++-++.+..-++ +.....|+.++..|.+||++++=+
T Consensus 142 ~e~V~~n~~~~gl~~~~v~~vkG~F~dTLp~~p~~~IAll~lD~DlY---------esT~~aLe~lyprl~~GGiIi~DD 212 (248)
T PF05711_consen 142 LEEVRENFARYGLLDDNVRFVKGWFPDTLPDAPIERIALLHLDCDLY---------ESTKDALEFLYPRLSPGGIIIFDD 212 (248)
T ss_dssp HHHHHHCCCCTTTSSTTEEEEES-HHHHCCC-TT--EEEEEE---SH---------HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HHHHHHHHHHcCCCcccEEEECCcchhhhccCCCccEEEEEEeccch---------HHHHHHHHHHHhhcCCCeEEEEeC
Confidence 45555666543 3789999998764 323444555554443222 566888999999999999999988
Q ss_pred cCChh
Q 025475 160 YGDPK 164 (252)
Q Consensus 160 ~~~~~ 164 (252)
++.+.
T Consensus 213 Y~~~g 217 (248)
T PF05711_consen 213 YGHPG 217 (248)
T ss_dssp TTTHH
T ss_pred CCChH
Confidence 77643
|
TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A. |
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.91 Score=38.34 Aligned_cols=88 Identities=17% Similarity=0.197 Sum_probs=55.9
Q ss_pred CCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 48 PTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 48 ~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.++.++|-+||| .|.++..+++. |...++++|.++..++.+... .+ .|..+. ....+|+|+..-.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~-------~~--i~~~~~---~~~g~Dvvid~~G- 209 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGY-------EV--LDPEKD---PRRDYRAIYDASG- 209 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhc-------cc--cChhhc---cCCCCCEEEECCC-
Confidence 346688988987 47777777765 665677889888766655432 11 111110 1235899885321
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
-...++.+.++|+++|.+++...
T Consensus 210 ------------~~~~~~~~~~~l~~~G~iv~~G~ 232 (308)
T TIGR01202 210 ------------DPSLIDTLVRRLAKGGEIVLAGF 232 (308)
T ss_pred ------------CHHHHHHHHHhhhcCcEEEEEee
Confidence 12356778889999999987654
|
|
| >KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.14 Score=45.47 Aligned_cols=101 Identities=20% Similarity=0.182 Sum_probs=73.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCC---CCCCCCeeEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMS---FFEDESFDAV 119 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~---~~~~~~~D~v 119 (252)
.++.+|||.-|++|.-++..+.. +..++++-|.++.++...+++...+. .++....|+...- ......||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 45669999999999887777765 46799999999999999999885432 2444445543321 0234679998
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
=... .-....+|+.+.+.++.||.|+++.
T Consensus 188 DLDP-----------yGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 DLDP-----------YGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred ecCC-----------CCCccHHHHHHHHHhhcCCEEEEEe
Confidence 7542 2445678888899999999999865
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=92.66 E-value=0.46 Score=34.28 Aligned_cols=87 Identities=22% Similarity=0.277 Sum_probs=57.6
Q ss_pred cCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----C-CCCCCeeEEEeccchhhhcCCCC
Q 025475 59 GNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----F-FEDESFDAVIDKGTLDSLMCGTN 133 (252)
Q Consensus 59 G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~~~D~v~~~~~l~~~~~~~~ 133 (252)
|.|..+..+++....+++++|.++.-++.+++.-.. .++..+-.++. . .....+|+|+..-.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~----~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g--------- 67 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD----HVIDYSDDDFVEQIRELTGGRGVDVVIDCVG--------- 67 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES----EEEETTTSSHHHHHHHHTTTSSEEEEEESSS---------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc----ccccccccccccccccccccccceEEEEecC---------
Confidence 457778888877326999999999999998875321 22222211111 0 23357999995321
Q ss_pred ChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 134 APISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 134 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
-...++....+|+++|.+++.....
T Consensus 68 ----~~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 68 ----SGDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ----SHHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ----cHHHHHHHHHHhccCCEEEEEEccC
Confidence 1457888889999999999877554
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.7 Score=39.82 Aligned_cols=92 Identities=18% Similarity=0.322 Sum_probs=57.3
Q ss_pred CCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeC---CHHHHHHHHHhhcCCCCCeEEE---ccccCCCCCCCCCeeEE
Q 025475 48 PTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDI---SSVAIDMMKMKYEEIPQLKYLQ---MDVRDMSFFEDESFDAV 119 (252)
Q Consensus 48 ~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~---s~~~i~~a~~~~~~~~~v~~~~---~d~~~~~~~~~~~~D~v 119 (252)
.++.+||-+|+|. |.++..+++. |. ++++++. ++.-.+.+++.-. ..+. .+..+ . .....+|+|
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~~~~~~~~~~~~~~Ga-----~~v~~~~~~~~~-~-~~~~~~d~v 242 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRRDPPDPKADIVEELGA-----TYVNSSKTPVAE-V-KLVGEFDLI 242 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecCCCCHHHHHHHHHcCC-----EEecCCccchhh-h-hhcCCCCEE
Confidence 4677899999874 7777777766 45 7999987 6777776665321 1111 11111 0 112458988
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+..-. -...+....++|+++|.+++...
T Consensus 243 id~~g-------------~~~~~~~~~~~l~~~G~~v~~G~ 270 (355)
T cd08230 243 IEATG-------------VPPLAFEALPALAPNGVVILFGV 270 (355)
T ss_pred EECcC-------------CHHHHHHHHHHccCCcEEEEEec
Confidence 85321 12357778899999999887654
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=92.42 E-value=1.6 Score=34.99 Aligned_cols=74 Identities=14% Similarity=0.181 Sum_probs=46.4
Q ss_pred CCcEEEEcccCc--H-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNA--L-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G--~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
+.+||-.|++.| . .+..+++.|. +|++++.++..............++.++.+|+.+.... .-+..|
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~id 83 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSSTESARNVIEKAAKVLNAID 83 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 458889998643 2 3444455566 89999999876665544443334678888998864311 013468
Q ss_pred EEEeccc
Q 025475 118 AVIDKGT 124 (252)
Q Consensus 118 ~v~~~~~ 124 (252)
.++.+..
T Consensus 84 ~ii~~ag 90 (238)
T PRK05786 84 GLVVTVG 90 (238)
T ss_pred EEEEcCC
Confidence 7776543
|
|
| >PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.6 Score=33.86 Aligned_cols=101 Identities=15% Similarity=0.299 Sum_probs=55.2
Q ss_pred hHHHHHhhCCCCCcEEEEcccCc-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCC-CCCe
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNA-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-DESF 116 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~-~~~~ 116 (252)
+.+.+....+.+ +|+|+|-|.= ..+..|.+.|. .++++|+.+.. +. ..+.++.-|+++.. +. =...
T Consensus 4 ~a~~ia~~~~~~-kiVEVGiG~~~~vA~~L~~~G~-dV~~tDi~~~~---a~------~g~~~v~DDif~P~-l~iY~~a 71 (127)
T PF03686_consen 4 FAEYIARLNNYG-KIVEVGIGFNPEVAKKLKERGF-DVIATDINPRK---AP------EGVNFVVDDIFNPN-LEIYEGA 71 (127)
T ss_dssp HHHHHHHHS-SS-EEEEET-TT--HHHHHHHHHS--EEEEE-SS-S-------------STTEE---SSS---HHHHTTE
T ss_pred HHHHHHHhCCCC-cEEEECcCCCHHHHHHHHHcCC-cEEEEECcccc---cc------cCcceeeecccCCC-HHHhcCC
Confidence 455565554444 9999999964 56777777785 99999999871 11 25788999998864 21 1358
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+|.+.. ++..++..+.++.+. -|.-+++...+..
T Consensus 72 ~lIYSiR----------PP~El~~~il~lA~~--v~adlii~pL~~e 106 (127)
T PF03686_consen 72 DLIYSIR----------PPPELQPPILELAKK--VGADLIIRPLGGE 106 (127)
T ss_dssp EEEEEES------------TTSHHHHHHHHHH--HT-EEEEE-BTTB
T ss_pred cEEEEeC----------CChHHhHHHHHHHHH--hCCCEEEECCCCC
Confidence 9998753 334445555555553 3557777765543
|
; PDB: 2K4M_A. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=92.11 E-value=0.89 Score=39.47 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=59.0
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC----CCCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SFFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~----~~~~~~~~D~v~ 120 (252)
+.++.+||-.|+|. |..+..+++. |..+|+++|.++.-.+.+++.-. ..++...-.+. .....+.+|+|+
T Consensus 189 i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~i~~~~~~g~d~vi 264 (371)
T cd08281 189 VRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA----TATVNAGDPNAVEQVRELTGGGVDYAF 264 (371)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC----ceEeCCCchhHHHHHHHHhCCCCCEEE
Confidence 55677888899863 6666666665 55479999999988888765321 11111111111 001123689988
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..-. -...+....+.|+++|.+++...
T Consensus 265 d~~G-------------~~~~~~~~~~~l~~~G~iv~~G~ 291 (371)
T cd08281 265 EMAG-------------SVPALETAYEITRRGGTTVTAGL 291 (371)
T ss_pred ECCC-------------ChHHHHHHHHHHhcCCEEEEEcc
Confidence 5211 12356667788999999887653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=91.94 E-value=1.8 Score=36.66 Aligned_cols=96 Identities=18% Similarity=0.283 Sum_probs=60.0
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC-----CCCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-----SFFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~-----~~~~~~~~D~v~ 120 (252)
+.++.+||..|+| .|..+..++.....++++++.++...+.++..- +..+..+-... .......+|+|+
T Consensus 163 ~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~D~vi 237 (338)
T cd08254 163 VKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELG-----ADEVLNSLDDSPKDKKAAGLGGGFDVIF 237 (338)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhC-----CCEEEcCCCcCHHHHHHHhcCCCceEEE
Confidence 5567788888876 477777777653237999999999888875531 11111111100 002345689888
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
... .....++++.+.|+++|.++....
T Consensus 238 d~~-------------g~~~~~~~~~~~l~~~G~~v~~g~ 264 (338)
T cd08254 238 DFV-------------GTQPTFEDAQKAVKPGGRIVVVGL 264 (338)
T ss_pred ECC-------------CCHHHHHHHHHHhhcCCEEEEECC
Confidence 431 113467788899999999987654
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.2 Score=38.50 Aligned_cols=97 Identities=15% Similarity=0.173 Sum_probs=58.8
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc---cccC-CCC-CCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRD-MSF-FEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~---d~~~-~~~-~~~~~~D~v 119 (252)
+.++.+||-.|+|. |..+..+++. |..+++++|.++.-.+.+++.-. -.++.. +..+ ... .....+|+|
T Consensus 174 ~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~i~~~~~~~g~d~v 249 (358)
T TIGR03451 174 VKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA----THTVNSSGTDPVEAIRALTGGFGADVV 249 (358)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC----ceEEcCCCcCHHHHHHHHhCCCCCCEE
Confidence 56778999998863 6666666665 55469999999988888865321 122211 1100 000 122358988
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+..-. -...++...+.+++||.+++...
T Consensus 250 id~~g-------------~~~~~~~~~~~~~~~G~iv~~G~ 277 (358)
T TIGR03451 250 IDAVG-------------RPETYKQAFYARDLAGTVVLVGV 277 (358)
T ss_pred EECCC-------------CHHHHHHHHHHhccCCEEEEECC
Confidence 84211 12346667788999999887654
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=91.76 E-value=3.6 Score=35.05 Aligned_cols=92 Identities=17% Similarity=0.200 Sum_probs=58.4
Q ss_pred hCCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 46 YIPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 46 ~~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.+.++.+||-.|+| .|..+..+++. |. ++++++.+++-.+.+++.-.+ .++ |..+. ..+.+|+++...
T Consensus 162 ~~~~g~~VlV~G~g~iG~~a~~~a~~~G~-~vi~~~~~~~~~~~a~~~Ga~----~vi--~~~~~---~~~~~d~~i~~~ 231 (329)
T TIGR02822 162 SLPPGGRLGLYGFGGSAHLTAQVALAQGA-TVHVMTRGAAARRLALALGAA----SAG--GAYDT---PPEPLDAAILFA 231 (329)
T ss_pred CCCCCCEEEEEcCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHhCCc----eec--ccccc---CcccceEEEECC
Confidence 35677899999975 35565666655 45 799999999888877765221 111 11111 123578766421
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. -...+....+.|+++|++++...
T Consensus 232 ~-------------~~~~~~~~~~~l~~~G~~v~~G~ 255 (329)
T TIGR02822 232 P-------------AGGLVPPALEALDRGGVLAVAGI 255 (329)
T ss_pred C-------------cHHHHHHHHHhhCCCcEEEEEec
Confidence 1 12357778889999999987664
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=91.59 E-value=0.59 Score=40.36 Aligned_cols=43 Identities=16% Similarity=0.093 Sum_probs=36.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMK 91 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~ 91 (252)
+-..++|+|+|.|.++..+.-+....|.+||-|....++|++.
T Consensus 153 gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~rL 195 (476)
T KOG2651|consen 153 GIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQRL 195 (476)
T ss_pred CCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHHH
Confidence 3458999999999999999877555899999998888877664
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=91.53 E-value=0.64 Score=38.65 Aligned_cols=94 Identities=18% Similarity=0.172 Sum_probs=57.9
Q ss_pred CCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-c----ccCCCCCCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-D----VRDMSFFEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-d----~~~~~~~~~~~~D~v~ 120 (252)
.++.+||-+|+|. |..+..+++. |..+++++|.++.-.+.+++.-.. .++.. + +.+. .....+|+|+
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~----~~i~~~~~~~~~~~~--~~~~g~d~vi 192 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT----ALAEPEVLAERQGGL--QNGRGVDVAL 192 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc----EecCchhhHHHHHHH--hCCCCCCEEE
Confidence 3567899998863 6666666665 554599999998887777764211 11110 0 1111 1223589988
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..-. -...++.+.+.|+++|.+++...
T Consensus 193 d~~G-------------~~~~~~~~~~~l~~~G~iv~~G~ 219 (280)
T TIGR03366 193 EFSG-------------ATAAVRACLESLDVGGTAVLAGS 219 (280)
T ss_pred ECCC-------------ChHHHHHHHHHhcCCCEEEEecc
Confidence 5211 13357777889999999987663
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.31 E-value=2.8 Score=35.15 Aligned_cols=75 Identities=12% Similarity=0.270 Sum_probs=48.7
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
+.++|-.|++.|. ++..+++.|. +++.++.+++.++.....+.....+..+.+|+.+.... ..+..|
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~id 87 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHARGA-KLALVDLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAEEAVERFGGID 87 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5578888876542 5555566676 89999999887766555543223455566888764311 125689
Q ss_pred EEEeccch
Q 025475 118 AVIDKGTL 125 (252)
Q Consensus 118 ~v~~~~~l 125 (252)
+|+.+...
T Consensus 88 ~vI~nAG~ 95 (296)
T PRK05872 88 VVVANAGI 95 (296)
T ss_pred EEEECCCc
Confidence 99987654
|
|
| >COG1568 Predicted methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.15 E-value=1.5 Score=36.36 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=77.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCC-CCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMS-FFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~-~~~~~~~D~v~~~~~ 124 (252)
.+..|+-+| -.-..+..++..+ ..++..||+++..++..++..... ++++....|+++.- +.....||+++...+
T Consensus 152 ~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfiTDPp 230 (354)
T COG1568 152 EGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFITDPP 230 (354)
T ss_pred CCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeeecCch
Confidence 345799998 3334444444444 668999999999999888877543 47899999998863 223468999987543
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCC---cEEEEEEcCChhhhhhhc
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPG---GIYMLITYGDPKARMIHL 170 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~g---G~l~i~~~~~~~~~~~~~ 170 (252)
+.+ .....++.+=...|+.- |++.++.-..+..+-..+
T Consensus 231 -eTi-------~alk~FlgRGI~tLkg~~~aGyfgiT~ressidkW~ei 271 (354)
T COG1568 231 -ETI-------KALKLFLGRGIATLKGEGCAGYFGITRRESSIDKWREI 271 (354)
T ss_pred -hhH-------HHHHHHHhccHHHhcCCCccceEeeeeccccHHHHHHH
Confidence 223 45566777777788776 788887766555444444
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.12 E-value=3.7 Score=33.53 Aligned_cols=109 Identities=17% Similarity=0.166 Sum_probs=60.0
Q ss_pred CCcEEEEcccC----c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCGN----A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~----G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
+.++|-.|+++ | ..+..+++.|. +++.++.++...+..++.....+.+.++.+|+.+.... ..+.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 88 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAVFARIAEEWGR 88 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHHHHHHHHHcCC
Confidence 56788889764 2 25555666676 78888888654333333222223455778888775311 1257
Q ss_pred eeEEEeccchhhh-----cCCCCChhhHHHH-----------HHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSL-----MCGTNAPISASQM-----------LGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~-----~~~~~~~~~~~~~-----------l~~~~~~L~~gG~l~i~~ 159 (252)
.|+++.+..+... .....+.++..+. .+.+...|+.+|.++...
T Consensus 89 ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 89 LDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred CCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 8999987643210 0011122333333 355566677778766543
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.93 Score=41.16 Aligned_cols=98 Identities=17% Similarity=0.330 Sum_probs=59.9
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-----------CC-C----
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-----------MS-F---- 110 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-----------~~-~---- 110 (252)
++.+|+-+|+|. |..+..++.. |. .++++|.++...+.++..- .+++..|..+ +. +
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA-~V~v~d~~~~rle~a~~lG-----a~~v~v~~~e~g~~~~gYa~~~s~~~~~~ 236 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGA-IVRAFDTRPEVKEQVQSMG-----AEFLELDFKEEGGSGDGYAKVMSEEFIAA 236 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC-----CeEEeccccccccccccceeecCHHHHHH
Confidence 456999999995 6766666665 54 7999999999888777631 1232322211 00 0
Q ss_pred ----C--CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 111 ----F--EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 111 ----~--~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+ .-..+|+|+..-.+. ....+.=+.+++.+.+|||+.++=..
T Consensus 237 ~~~~~~e~~~~~DIVI~Talip-------G~~aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 237 EMELFAAQAKEVDIIITTALIP-------GKPAPKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHhCCCCEEEECcccC-------CCCCCeeehHHHHhhCCCCCEEEEee
Confidence 0 124589997643221 11233345777889999999876443
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.8 Score=36.97 Aligned_cols=102 Identities=17% Similarity=0.257 Sum_probs=64.4
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc----cccCC-CCCCCCCeeE
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM----DVRDM-SFFEDESFDA 118 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~----d~~~~-~~~~~~~~D~ 118 (252)
.++++.+|.-+|||. |..+..-+.. |..+++++|++++-+++|++.=+ .+++.. |+.+. .+..++..|.
T Consensus 182 ~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGA----T~~vn~~~~~~vv~~i~~~T~gG~d~ 257 (366)
T COG1062 182 KVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGA----THFVNPKEVDDVVEAIVELTDGGADY 257 (366)
T ss_pred cCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCC----ceeecchhhhhHHHHHHHhcCCCCCE
Confidence 356788999999974 6655555554 67799999999999999987632 233322 12111 1123345677
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
++.. . .....++...+.+.++|..+++....+.
T Consensus 258 ~~e~-----~--------G~~~~~~~al~~~~~~G~~v~iGv~~~~ 290 (366)
T COG1062 258 AFEC-----V--------GNVEVMRQALEATHRGGTSVIIGVAGAG 290 (366)
T ss_pred EEEc-----c--------CCHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 6531 1 1122566667777779998887765554
|
|
| >PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures [] | Back alignment and domain information |
|---|
Probab=90.88 E-value=1.9 Score=35.63 Aligned_cols=117 Identities=18% Similarity=0.246 Sum_probs=64.0
Q ss_pred hhHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcC------CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEcccc
Q 025475 38 ALRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDG------YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVR 106 (252)
Q Consensus 38 ~l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~------~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~ 106 (252)
.+...+... +.++..++|+|||.|.++.+++... ...++.||....=. .+...+... +.++=+..|+.
T Consensus 5 Sli~~l~~~~ll~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~-K~D~~~~~~~~~~~~~R~riDI~ 83 (259)
T PF05206_consen 5 SLIGNLEQRGLLNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRH-KADNKIRKDESEPKFERLRIDIK 83 (259)
T ss_pred HHHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccc-cchhhhhccCCCCceEEEEEEee
Confidence 344444443 4567799999999999999988752 34799999854211 222222221 24566677777
Q ss_pred CCCC--CCC---CCee-EEEeccchhhhcCCCCChhhHHHHHHHHHH---cccCCcEEEEEEc
Q 025475 107 DMSF--FED---ESFD-AVIDKGTLDSLMCGTNAPISASQMLGEVSR---LLKPGGIYMLITY 160 (252)
Q Consensus 107 ~~~~--~~~---~~~D-~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~---~L~~gG~l~i~~~ 160 (252)
++.- ++. ..-. ++++. | +|+...+--++.+++.... -.+..|.++..-.
T Consensus 84 dl~l~~~~~~~~~~~~vv~isK----H-LCG~ATDlaLRcl~~~~~~~~~~~~~~gi~iA~CC 141 (259)
T PF05206_consen 84 DLDLSKLPELQNDEKPVVAISK----H-LCGAATDLALRCLLNSQKLSEGNGSVRGIVIAPCC 141 (259)
T ss_pred ccchhhcccccCCCCcEEEEEc----c-ccccchhHHHHhhccCccccccCCccCeEEEEeCC
Confidence 6540 111 1112 33333 3 4665554444444333322 2346777776543
|
The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing |
| >KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=90.51 E-value=1.9 Score=36.16 Aligned_cols=77 Identities=21% Similarity=0.278 Sum_probs=58.4
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---------CCCCCe
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~~ 116 (252)
.+..||--|+|.|. .+..++++|. +++..|++++..+...+.+++.+.++...+|+.+..+ -.-+..
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~~eei~~~a~~Vk~e~G~V 115 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQGNEETVKEIRKIGEAKAYTCDISDREEIYRLAKKVKKEVGDV 115 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEeccccchHHHHHHHHhcCceeEEEecCCCHHHHHHHHHHHHHhcCCc
Confidence 45689999998874 7788888876 8999999988777776666544578889999987642 124678
Q ss_pred eEEEeccchh
Q 025475 117 DAVIDKGTLD 126 (252)
Q Consensus 117 D~v~~~~~l~ 126 (252)
|+++.+..+-
T Consensus 116 ~ILVNNAGI~ 125 (300)
T KOG1201|consen 116 DILVNNAGIV 125 (300)
T ss_pred eEEEeccccc
Confidence 9999886543
|
|
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.68 Score=43.68 Aligned_cols=104 Identities=14% Similarity=0.106 Sum_probs=62.5
Q ss_pred CCcEEEEcccCcHhHHHHHHc-------------CCCcEEEEeCCH---HHHHHHHH-----------hhc-------C-
Q 025475 50 SSRVLMVGCGNALMSEDMVKD-------------GYEDIVNIDISS---VAIDMMKM-----------KYE-------E- 94 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~-------------~~~~v~~vD~s~---~~i~~a~~-----------~~~-------~- 94 (252)
.-+|+|+|=|+|.+.....+. ..-+++++|..| +.+..+.. ... +
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 137 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGC 137 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCc
Confidence 359999999999865554421 023789999643 33332221 110 0
Q ss_pred ------CC--CCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCC-CChhhH-HHHHHHHHHcccCCcEEEEEE
Q 025475 95 ------IP--QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGT-NAPISA-SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 95 ------~~--~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~-~~~~~~-~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+ .+++..+|+.+........+|+++... |++ .+++.. ..+++.+.+++++||.+.-.+
T Consensus 138 ~~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~------FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 138 HRLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDG------FAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred eEEEecCCcEEEEEEecCHHHHHHhccccccEEEeCC------CCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 01 244666777654211234699999764 222 244433 778999999999999987543
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=89.64 E-value=5 Score=28.20 Aligned_cols=89 Identities=17% Similarity=0.171 Sum_probs=53.9
Q ss_pred ccCcHhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEeccchhhhcCC
Q 025475 58 CGNALMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDKGTLDSLMCG 131 (252)
Q Consensus 58 ~G~G~~~~~l~~~---~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~~~l~~~~~~ 131 (252)
||.|..+..+++. +..+++.+|.+++.++.++... +.++.+|..+... ..-..++.|++...
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-----~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~------- 71 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-----VEVIYGDATDPEVLERAGIEKADAVVILTD------- 71 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-----SEEEES-TTSHHHHHHTTGGCESEEEEESS-------
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-----cccccccchhhhHHhhcCccccCEEEEccC-------
Confidence 4455555555544 3348999999999988887663 6899999987531 23346888776321
Q ss_pred CCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 132 TNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 132 ~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+ +...-.+-...+-+.|...+++....
T Consensus 72 --~-d~~n~~~~~~~r~~~~~~~ii~~~~~ 98 (116)
T PF02254_consen 72 --D-DEENLLIALLARELNPDIRIIARVND 98 (116)
T ss_dssp --S-HHHHHHHHHHHHHHTTTSEEEEEESS
T ss_pred --C-HHHHHHHHHHHHHHCCCCeEEEEECC
Confidence 1 22222333344556777777766543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=89.59 E-value=2.3 Score=37.09 Aligned_cols=98 Identities=17% Similarity=0.258 Sum_probs=58.6
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc-----ccC-CCCCCCCCee
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-----VRD-MSFFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~D 117 (252)
.+.++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++.-. -.++... ..+ ......+.+|
T Consensus 195 ~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~~~v~~~~~~g~d 270 (381)
T PLN02740 195 NVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI----TDFINPKDSDKPVHERIREMTGGGVD 270 (381)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC----cEEEecccccchHHHHHHHHhCCCCC
Confidence 356778999999863 6666666665 55469999999988888865311 1222111 111 0001122689
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
+|+..-. -...+......+++| |.+++...
T Consensus 271 vvid~~G-------------~~~~~~~a~~~~~~g~G~~v~~G~ 301 (381)
T PLN02740 271 YSFECAG-------------NVEVLREAFLSTHDGWGLTVLLGI 301 (381)
T ss_pred EEEECCC-------------ChHHHHHHHHhhhcCCCEEEEEcc
Confidence 9985321 123466666778886 88776553
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.56 E-value=0.58 Score=41.68 Aligned_cols=115 Identities=17% Similarity=0.166 Sum_probs=75.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCC----CC--CCCCCeeE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDM----SF--FEDESFDA 118 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~----~~--~~~~~~D~ 118 (252)
..+..+|-+|-|.|.+...+... +..++++|+++|.+++.++.++.-. .+.+++..|..+. .. ..+..||+
T Consensus 294 ~~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~~~~~~~dv 373 (482)
T KOG2352|consen 294 DTGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQQEDICPDV 373 (482)
T ss_pred cccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhccccccCCcE
Confidence 34458899999999999888766 4569999999999999999987321 1233333333221 10 24557898
Q ss_pred EEeccc-h-hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 119 VIDKGT-L-DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 119 v~~~~~-l-~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+...-- - .|-+...++.--...++..+..+|.|.|.+++--..+
T Consensus 374 l~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r 419 (482)
T KOG2352|consen 374 LMVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTR 419 (482)
T ss_pred EEEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecC
Confidence 876421 1 1212333333445778899999999999998755433
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.42 E-value=1.1 Score=37.73 Aligned_cols=99 Identities=13% Similarity=0.191 Sum_probs=68.0
Q ss_pred CcEEEEcccC-cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 51 SRVLMVGCGN-ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 51 ~~vLD~G~G~-G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
.+|.-+|.|. |..+..++....++|+.+|+|.+-++.....+.. +++..--+..++. ..-...|+|+..-.
T Consensus 169 ~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~--rv~~~~st~~~ie-e~v~~aDlvIgaVL----- 240 (371)
T COG0686 169 AKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGG--RVHTLYSTPSNIE-EAVKKADLVIGAVL----- 240 (371)
T ss_pred ccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCc--eeEEEEcCHHHHH-HHhhhccEEEEEEE-----
Confidence 4778888884 7777777776555999999999888877776632 4555555544443 22246888886322
Q ss_pred CCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 130 CGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+....+.=..+++...||||+.++=+.
T Consensus 241 --IpgakaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 241 --IPGAKAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred --ecCCCCceehhHHHHHhcCCCcEEEEEE
Confidence 2344666677888899999999876543
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.41 E-value=8 Score=32.21 Aligned_cols=99 Identities=20% Similarity=0.282 Sum_probs=60.0
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-------CCC------------CCeEEEccccCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-------EIP------------QLKYLQMDVRDMSF 110 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~-------~~~------------~v~~~~~d~~~~~~ 110 (252)
+|.-+|+|. +.++..++..|. +|+++|.+++.++.++.++. ... ++++ ..|. .
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~---~- 78 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDL---D- 78 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCH---H-
Confidence 577889984 567777777776 89999999998876553321 111 1111 1111 1
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
.-...|+|+.. -.++..-...++.++.+.++++..+.-.+.+.+..
T Consensus 79 -~~~~aDlVi~a--------v~e~~~~k~~~~~~l~~~~~~~~il~s~ts~~~~~ 124 (282)
T PRK05808 79 -DLKDADLVIEA--------ATENMDLKKKIFAQLDEIAKPEAILATNTSSLSIT 124 (282)
T ss_pred -HhccCCeeeec--------ccccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH
Confidence 12357888853 22233556789999999998887663333333333
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.05 E-value=8.1 Score=32.40 Aligned_cols=104 Identities=18% Similarity=0.295 Sum_probs=64.6
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CCCCe----------E-EEccccCCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IPQLK----------Y-LQMDVRDMSFF 111 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~~v~----------~-~~~d~~~~~~~ 111 (252)
+|--+|+|+ +.++..++..|. +|+..|.+++.++.++.++.. .+.++ + ...|...
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~~~---- 81 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDLGD---- 81 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCHHH----
Confidence 788899984 456666777776 899999999999887665421 11110 0 1122211
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcc-cCCcEEEEEEcCChhhhhhh
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLL-KPGGIYMLITYGDPKARMIH 169 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~~gG~l~i~~~~~~~~~~~~ 169 (252)
-...|+|+.. +. .+.+-.+.++..+-.++ +|+..+.-.+...|......
T Consensus 82 -~~~~d~ViEa-v~-------E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~la~ 131 (286)
T PRK07819 82 -FADRQLVIEA-VV-------EDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMKLAA 131 (286)
T ss_pred -hCCCCEEEEe-cc-------cCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 1357888854 22 33377788889888888 66666655454555544433
|
|
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.04 E-value=3.5 Score=34.37 Aligned_cols=84 Identities=15% Similarity=0.059 Sum_probs=52.2
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
+|.-+|+|. |.++..+.+.|. +|+++|.++..++.+...- .+.....+. . .-...|+|+..-.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~~~~~~a~~~g----~~~~~~~~~---~--~~~~aDlVilavp----- 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRESTCERAIERG----LVDEASTDL---S--LLKDCDLVILALP----- 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHCC----CcccccCCH---h--HhcCCCEEEEcCC-----
Confidence 567788884 567777777775 8999999998877776531 111111111 1 1235799987543
Q ss_pred CCCCChhhHHHHHHHHHHcccCCcEE
Q 025475 130 CGTNAPISASQMLGEVSRLLKPGGIY 155 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l 155 (252)
.....++++++...++++-.+
T Consensus 67 -----~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 -----IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred -----HHHHHHHHHHHHHhCCCCcEE
Confidence 244456778888878766433
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.86 E-value=2.5 Score=35.36 Aligned_cols=89 Identities=19% Similarity=0.160 Sum_probs=57.7
Q ss_pred CcEEEEccc--CcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 51 SRVLMVGCG--NALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 51 ~~vLD~G~G--~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.+|+-+|.| .|.+++.+...| ...+++.|.+....+.+...- +..... .+.........|+|+..-++.
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg-----v~d~~~--~~~~~~~~~~aD~VivavPi~- 75 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG-----VIDELT--VAGLAEAAAEADLVIVAVPIE- 75 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC-----cccccc--cchhhhhcccCCEEEEeccHH-
Confidence 478888988 467888888887 446899999888777766442 111110 111002234589999765544
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
....+++++...|++|..+.
T Consensus 76 ---------~~~~~l~~l~~~l~~g~iv~ 95 (279)
T COG0287 76 ---------ATEEVLKELAPHLKKGAIVT 95 (279)
T ss_pred ---------HHHHHHHHhcccCCCCCEEE
Confidence 44778888888888887654
|
|
| >KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=88.85 E-value=2 Score=37.32 Aligned_cols=106 Identities=8% Similarity=0.018 Sum_probs=67.2
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHh---h--------cCCCCCeEEEccccCCCC--CC
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMK---Y--------EEIPQLKYLQMDVRDMSF--FE 112 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~---~--------~~~~~v~~~~~d~~~~~~--~~ 112 (252)
+.++....|+|+|.|.....++..+ ..+-+|+++....-+.+..+ + +....++.+.+++.+... .-
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 5677799999999999999888774 55777888765433333222 1 112357777887766431 22
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
....++|+++++.-. +++.--+.++..-+++|-+++-...
T Consensus 270 ~~eatvi~vNN~~Fd--------p~L~lr~~eil~~ck~gtrIiS~~~ 309 (419)
T KOG3924|consen 270 QTEATVIFVNNVAFD--------PELKLRSKEILQKCKDGTRIISSKP 309 (419)
T ss_pred hhcceEEEEecccCC--------HHHHHhhHHHHhhCCCcceEecccc
Confidence 356889999876332 2222223477777887777765443
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=88.76 E-value=9.6 Score=31.90 Aligned_cols=91 Identities=15% Similarity=0.218 Sum_probs=55.3
Q ss_pred CcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----------CC------------CeEEEcccc
Q 025475 51 SRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----------PQ------------LKYLQMDVR 106 (252)
Q Consensus 51 ~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----------~~------------v~~~~~d~~ 106 (252)
.+|.-+|+|. | .++..++..|. +|+.+|.+++.++.+++.+... .. +.. ..|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~- 80 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRT-STSY- 80 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEe-eCCH-
Confidence 3688889984 3 46666667776 8999999999988765543210 01 111 1111
Q ss_pred CCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 107 DMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 107 ~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
. .-...|+|+..- ..+.+....+++++.+.++++..++
T Consensus 81 --~--~~~~aDlVieav--------~e~~~~k~~~~~~l~~~~~~~~il~ 118 (291)
T PRK06035 81 --E--SLSDADFIVEAV--------PEKLDLKRKVFAELERNVSPETIIA 118 (291)
T ss_pred --H--HhCCCCEEEEcC--------cCcHHHHHHHHHHHHhhCCCCeEEE
Confidence 1 113478888542 1222456888888888888776554
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.66 E-value=4.8 Score=32.87 Aligned_cols=72 Identities=11% Similarity=0.215 Sum_probs=46.4
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
+.++|-.|++.| .++..+++.|. +|+.++.++...+....... .++.++.+|+.+.... ..+..|
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~g~id 82 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDADNGAAVAASLG--ERARFIATDITDDAAIERAVATVVARFGRVD 82 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CeeEEEEecCCCHHHHHHHHHHHHHHhCCCC
Confidence 457888887544 25555666676 89999998765544433331 3577888998875311 124689
Q ss_pred EEEeccc
Q 025475 118 AVIDKGT 124 (252)
Q Consensus 118 ~v~~~~~ 124 (252)
+++.+..
T Consensus 83 ~lv~~ag 89 (261)
T PRK08265 83 ILVNLAC 89 (261)
T ss_pred EEEECCC
Confidence 9887654
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=88.59 E-value=1.4 Score=34.40 Aligned_cols=108 Identities=15% Similarity=0.269 Sum_probs=56.1
Q ss_pred cEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---------------CCCeEEEccccCCCCCCCC
Q 025475 52 RVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---------------PQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 52 ~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---------------~~v~~~~~d~~~~~~~~~~ 114 (252)
+|--+|.|- | ..+..+++.|+ +|+|+|++++-++..++-.... ++..+ ..|..+. -.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~-~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~-t~~~~~a----i~ 75 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGH-QVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRA-TTDIEEA----IK 75 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTS-EEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEE-ESEHHHH----HH
T ss_pred EEEEECCCcchHHHHHHHHhCCC-EEEEEeCChHHHHHHhhccccccccchhhhhccccccccchh-hhhhhhh----hh
Confidence 566778873 4 46666677776 9999999999887766532110 11111 1111110 12
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
..|+++..-.--.-.-+.++.....++++.+...|+++-.+++-+...|..
T Consensus 76 ~adv~~I~VpTP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGt 126 (185)
T PF03721_consen 76 DADVVFICVPTPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGT 126 (185)
T ss_dssp H-SEEEE----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTH
T ss_pred ccceEEEecCCCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEee
Confidence 467766532211111122344667889999999999866666655444443
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >TIGR00497 hsdM type I restriction system adenine methylase (hsdM) | Back alignment and domain information |
|---|
Probab=88.48 E-value=7.6 Score=35.42 Aligned_cols=127 Identities=10% Similarity=0.203 Sum_probs=75.1
Q ss_pred eccchhhHHHHHhhC----CCCCcEEEEcccCcHhHHHHHHc---C--CCcEEEEeCCHHHHHHHHHhh--cCC--CCCe
Q 025475 33 YQRYSALRPFVRKYI----PTSSRVLMVGCGNALMSEDMVKD---G--YEDIVNIDISSVAIDMMKMKY--EEI--PQLK 99 (252)
Q Consensus 33 ~~~~~~l~~~~~~~~----~~~~~vLD~G~G~G~~~~~l~~~---~--~~~v~~vD~s~~~i~~a~~~~--~~~--~~v~ 99 (252)
+.....+.+++...+ .++..+.|..||+|.+....... + ...++|.+..+.+...+..+. ... ....
T Consensus 197 ~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~ 276 (501)
T TIGR00497 197 FFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFN 276 (501)
T ss_pred eeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccC
Confidence 334455555554432 24468999999999988765432 2 246999999999999998874 211 1223
Q ss_pred EEEccccCCCCC-CCCCeeEEEeccchhhh-cCC-CC----------------ChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 100 YLQMDVRDMSFF-EDESFDAVIDKGTLDSL-MCG-TN----------------APISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 100 ~~~~d~~~~~~~-~~~~~D~v~~~~~l~~~-~~~-~~----------------~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...+|....+.. ...+||+|+++..+.-. ..+ .+ ....-..++..+...|++||...++-
T Consensus 277 ~~~~dtl~~~d~~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI~ 355 (501)
T TIGR00497 277 IINADTLTTKEWENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIVC 355 (501)
T ss_pred cccCCcCCCccccccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEEe
Confidence 334443332112 34569999988765421 001 00 01122456677788999999755544
|
Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)). |
| >PLN02827 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=88.39 E-value=2.3 Score=37.12 Aligned_cols=97 Identities=14% Similarity=0.198 Sum_probs=57.2
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-----cccC-CCCCCCCCee
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-----DVRD-MSFFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-----d~~~-~~~~~~~~~D 117 (252)
.+.++.+||-.|+|. |..+..+++. |...++++|.++.-.+.+++.-. -.++.. +..+ +.....+.+|
T Consensus 190 ~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa----~~~i~~~~~~~~~~~~v~~~~~~g~d 265 (378)
T PLN02827 190 DVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV----TDFINPNDLSEPIQQVIKRMTGGGAD 265 (378)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----cEEEcccccchHHHHHHHHHhCCCCC
Confidence 356778999998863 6666666655 55468999999888777755321 112211 1100 0001122589
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~ 159 (252)
+|+..-. -...+....++|++| |.+++..
T Consensus 266 ~vid~~G-------------~~~~~~~~l~~l~~g~G~iv~~G 295 (378)
T PLN02827 266 YSFECVG-------------DTGIATTALQSCSDGWGLTVTLG 295 (378)
T ss_pred EEEECCC-------------ChHHHHHHHHhhccCCCEEEEEC
Confidence 8885311 122466677788998 9987754
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=88.26 E-value=8.4 Score=32.59 Aligned_cols=98 Identities=14% Similarity=0.197 Sum_probs=58.7
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHh--h--cCCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMK--Y--EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~--~--~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
++|+-+|+|. |.++..|.+.|. +|+.++.+++.++..++. + ............... + ...+.+|+|+..-=
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~-~-~~~~~~D~viv~vK 79 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGL-PVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAET-A-DAAEPIHRLLLACK 79 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCC-CeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCC-c-ccccccCEEEEECC
Confidence 4799999994 456777777665 899999987666655542 1 111111111111111 1 12347899886421
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
- .+...+++.+...+.++..++....+
T Consensus 80 ~----------~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 80 A----------YDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred H----------HhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 1 24467788889999998877776654
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.24 E-value=2.6 Score=36.91 Aligned_cols=72 Identities=19% Similarity=0.322 Sum_probs=49.6
Q ss_pred CcEEEEcccC-cHhHHH-HHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC--CCCCeeEEEeccc
Q 025475 51 SRVLMVGCGN-ALMSED-MVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF--EDESFDAVIDKGT 124 (252)
Q Consensus 51 ~~vLD~G~G~-G~~~~~-l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~--~~~~~D~v~~~~~ 124 (252)
++||-+|||. |+.... +++.+..+|+..|.+++..+.+..... ++++..+.|+.+.+.. .-..+|+|+....
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~--~~v~~~~vD~~d~~al~~li~~~d~VIn~~p 77 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIG--GKVEALQVDAADVDALVALIKDFDLVINAAP 77 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhcc--ccceeEEecccChHHHHHHHhcCCEEEEeCC
Confidence 4799999974 654444 455565699999999888777766542 3788999999887421 1123588887544
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=88.22 E-value=2.6 Score=35.81 Aligned_cols=93 Identities=19% Similarity=0.391 Sum_probs=56.3
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc---ccCCCCCCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d---~~~~~~~~~~~~D~v~~~~ 123 (252)
++.+||..|||. |..+..+++. |..++++++.++...+.++..-. -.++..+ +.... ...+.+|+|+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~----~~vi~~~~~~~~~~~-~~~~~vd~vld~~ 239 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA----DETVNLARDPLAAYA-ADKGDFDVVFEAS 239 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC----CEEEcCCchhhhhhh-ccCCCccEEEECC
Confidence 567888888764 6666666655 55478999999888776655311 1111111 11121 1223589998532
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. ....++.+.+.|+++|.++...
T Consensus 240 g-------------~~~~~~~~~~~L~~~G~~v~~g 262 (339)
T cd08232 240 G-------------APAALASALRVVRPGGTVVQVG 262 (339)
T ss_pred C-------------CHHHHHHHHHHHhcCCEEEEEe
Confidence 1 1234677789999999988654
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=88.16 E-value=0.67 Score=37.04 Aligned_cols=58 Identities=17% Similarity=0.265 Sum_probs=44.7
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccC
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRD 107 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~ 107 (252)
+.-|.++|.|.|..+..+++.+..+...|+.++..+.-.+...+..+ ...++..|+..
T Consensus 51 ~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~~~~~IHh~D~LR 109 (326)
T KOG0821|consen 51 NAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAPGKLRIHHGDVLR 109 (326)
T ss_pred cceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCCcceEEeccccce
Confidence 44799999999999999999987799999999887776665543322 56666677654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=88.05 E-value=2.9 Score=34.43 Aligned_cols=77 Identities=18% Similarity=0.228 Sum_probs=47.9
Q ss_pred HHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHH
Q 025475 64 SEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQML 142 (252)
Q Consensus 64 ~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l 142 (252)
++.+.+.| ..+|+++|.++..++.+++. +-+.-...+.... ..+|+|+..-+. .....++
T Consensus 2 A~aL~~~g~~~~v~g~d~~~~~~~~a~~~----g~~~~~~~~~~~~-----~~~DlvvlavP~----------~~~~~~l 62 (258)
T PF02153_consen 2 ALALRKAGPDVEVYGYDRDPETLEAALEL----GIIDEASTDIEAV-----EDADLVVLAVPV----------SAIEDVL 62 (258)
T ss_dssp HHHHHHTTTTSEEEEE-SSHHHHHHHHHT----TSSSEEESHHHHG-----GCCSEEEE-S-H----------HHHHHHH
T ss_pred hHHHHhCCCCeEEEEEeCCHHHHHHHHHC----CCeeeccCCHhHh-----cCCCEEEEcCCH----------HHHHHHH
Confidence 55667776 56999999999998888655 2222222221112 246999975443 5568899
Q ss_pred HHHHHcccCCcEEEEEE
Q 025475 143 GEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 143 ~~~~~~L~~gG~l~i~~ 159 (252)
+++...+++|+.+.=+.
T Consensus 63 ~~~~~~~~~~~iv~Dv~ 79 (258)
T PF02153_consen 63 EEIAPYLKPGAIVTDVG 79 (258)
T ss_dssp HHHHCGS-TTSEEEE--
T ss_pred HHhhhhcCCCcEEEEeC
Confidence 99999999987765443
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PRK10309 galactitol-1-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.99 E-value=3.7 Score=35.14 Aligned_cols=97 Identities=15% Similarity=0.270 Sum_probs=56.8
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc---ccCCCC-CCCCCee-EE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRDMSF-FEDESFD-AV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d---~~~~~~-~~~~~~D-~v 119 (252)
..++.+||-.|+|. |..+..+++. |...+++++.+++-.+.+++.-. ..++..+ ...... .....+| +|
T Consensus 158 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~~~~~~~~~~d~~v 233 (347)
T PRK10309 158 GCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGA----MQTFNSREMSAPQIQSVLRELRFDQLI 233 (347)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----ceEecCcccCHHHHHHHhcCCCCCeEE
Confidence 45677899998863 6666666665 55458899999988877754311 1111111 000100 1223577 55
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+.. . --...+....++|++||.+++...
T Consensus 234 ~d~-----~--------G~~~~~~~~~~~l~~~G~iv~~G~ 261 (347)
T PRK10309 234 LET-----A--------GVPQTVELAIEIAGPRAQLALVGT 261 (347)
T ss_pred EEC-----C--------CCHHHHHHHHHHhhcCCEEEEEcc
Confidence 531 1 112467778889999999888653
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.98 E-value=7.1 Score=31.70 Aligned_cols=72 Identities=11% Similarity=0.249 Sum_probs=48.1
Q ss_pred cEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC----C------CCCeeE
Q 025475 52 RVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF----E------DESFDA 118 (252)
Q Consensus 52 ~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~----~------~~~~D~ 118 (252)
++|-.|++.| .++..+++.|. +|++++.++..++....... ..++.++++|+.+.... . .++.|+
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~-~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~id~ 80 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGW-RVGAYDINEAGLAALAAELG-AGNAWTGALDVTDRAAWDAALADFAAATGGRLDV 80 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHhc-CCceEEEEecCCCHHHHHHHHHHHHHHcCCCCCE
Confidence 5788887643 25555666676 89999999887766655443 23678899999874311 0 356899
Q ss_pred EEeccch
Q 025475 119 VIDKGTL 125 (252)
Q Consensus 119 v~~~~~l 125 (252)
|+.+...
T Consensus 81 vi~~ag~ 87 (260)
T PRK08267 81 LFNNAGI 87 (260)
T ss_pred EEECCCC
Confidence 9876543
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=87.59 E-value=3.2 Score=36.80 Aligned_cols=89 Identities=10% Similarity=0.164 Sum_probs=56.1
Q ss_pred CCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 48 PTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 48 ~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
-++.+|+-+|+|. |......++. |. +|+.+|.++.-...|+.. + .... +..+. . ..+|+|+..-.
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~R~~~A~~~----G-~~~~--~~~e~--v--~~aDVVI~atG- 266 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPICALQAAME----G-YEVM--TMEEA--V--KEGDIFVTTTG- 266 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChhhHHHHHhc----C-CEEc--cHHHH--H--cCCCEEEECCC-
Confidence 3677999999995 7666655554 55 899999998766666543 1 1211 11111 1 24799986321
Q ss_pred hhhcCCCCChhhHHHHHHH-HHHcccCCcEEEEEEcC
Q 025475 126 DSLMCGTNAPISASQMLGE-VSRLLKPGGIYMLITYG 161 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~-~~~~L~~gG~l~i~~~~ 161 (252)
. ..++.. ..+.+++||+++.....
T Consensus 267 -----------~-~~~i~~~~l~~mk~GgilvnvG~~ 291 (413)
T cd00401 267 -----------N-KDIITGEHFEQMKDGAIVCNIGHF 291 (413)
T ss_pred -----------C-HHHHHHHHHhcCCCCcEEEEeCCC
Confidence 1 223444 47889999999876643
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=87.56 E-value=3.9 Score=34.54 Aligned_cols=114 Identities=18% Similarity=0.262 Sum_probs=75.4
Q ss_pred HHHHHhhCCCC-CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-----CCeEEEccccCCC--C-
Q 025475 40 RPFVRKYIPTS-SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-----QLKYLQMDVRDMS--F- 110 (252)
Q Consensus 40 ~~~~~~~~~~~-~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-----~v~~~~~d~~~~~--~- 110 (252)
-+.+.+.+..+ ..|+-+|||-=.=...+-......|+=+|. |+.++.=++.++... ..+++..|+++.. .
T Consensus 82 D~~~~~~~~~g~~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~ 160 (297)
T COG3315 82 DDFVRAALDAGIRQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQA 160 (297)
T ss_pred HHHHHHHHHhcccEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHH
Confidence 34455555544 589999999533222222211124555554 677777666665543 7899999998432 1
Q ss_pred -----CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 111 -----FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 111 -----~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+....--++++-+.+.++ +++...++++.|.....+|..++...
T Consensus 161 L~~~G~d~~~pt~~iaEGLl~YL-----~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 161 LAAAGFDRSRPTLWIAEGLLMYL-----PEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred HHhcCCCcCCCeEEEeccccccC-----CHHHHHHHHHHHHHhCCCCceEEEec
Confidence 123445678888999999 88999999999999988887776654
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=87.49 E-value=6.8 Score=33.30 Aligned_cols=97 Identities=20% Similarity=0.279 Sum_probs=57.3
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc---cccCCCC-CCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRDMSF-FEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~---d~~~~~~-~~~~~~D~v~ 120 (252)
+.++.+||-.|+| .|..+..+++. |..++++++.+++-.+.+++.-.. .++.. +...... .....+|+|+
T Consensus 161 ~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~----~~i~~~~~~~~~~~~~~~~~~~d~vi 236 (339)
T cd08239 161 VSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGAD----FVINSGQDDVQEIRELTSGAGADVAI 236 (339)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC----EEEcCCcchHHHHHHHhCCCCCCEEE
Confidence 4567788888876 35566666655 553499999999888777654211 11111 1111100 1233689998
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.... -...+....+.|+++|.+++...
T Consensus 237 d~~g-------------~~~~~~~~~~~l~~~G~~v~~g~ 263 (339)
T cd08239 237 ECSG-------------NTAARRLALEAVRPWGRLVLVGE 263 (339)
T ss_pred ECCC-------------CHHHHHHHHHHhhcCCEEEEEcC
Confidence 5311 12345666788999999887653
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >PRK08324 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.48 E-value=3.9 Score=38.76 Aligned_cols=75 Identities=15% Similarity=0.166 Sum_probs=48.6
Q ss_pred CCCcEEEEcccC--cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGN--AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~--G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
.+.+||-.|++. |. ++..+++.|. +|+++|.++...+.+...+....++.++.+|+.+.... ..+.+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~~~~~~~~~l~~~~~v~~v~~Dvtd~~~v~~~~~~~~~~~g~i 499 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEEAAEAAAAELGGPDRALGVACDVTDEAAVQAAFEEAALAFGGV 499 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHhccCcEEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 346888888643 33 4444555676 89999999877666655443223677888888764311 12468
Q ss_pred eEEEeccc
Q 025475 117 DAVIDKGT 124 (252)
Q Consensus 117 D~v~~~~~ 124 (252)
|+|+.+..
T Consensus 500 DvvI~~AG 507 (681)
T PRK08324 500 DIVVSNAG 507 (681)
T ss_pred CEEEECCC
Confidence 99987654
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=86.83 E-value=8 Score=36.96 Aligned_cols=107 Identities=15% Similarity=0.186 Sum_probs=68.2
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CCCCeEEEcc-----c---cCCCCCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IPQLKYLQMD-----V---RDMSFFEDE 114 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~~v~~~~~d-----~---~~~~~~~~~ 114 (252)
+|.-+|+|+ +.++..++..|. +|+.+|.+++.++.+..++.. .+.++-...+ + .++. .-.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~--~~~ 391 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSYA--GFD 391 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCHH--Hhc
Confidence 788999995 346666677776 999999999998887765421 1111100000 0 1111 113
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhh
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 169 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~ 169 (252)
..|+|+-. +.+.+ +-.++++.++-++++|+.+|.-.+-.-+......
T Consensus 392 ~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasnTS~l~i~~ia~ 438 (714)
T TIGR02437 392 NVDIVVEA-VVENP-------KVKAAVLAEVEQHVREDAILASNTSTISISLLAK 438 (714)
T ss_pred CCCEEEEc-CcccH-------HHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHh
Confidence 58888864 34444 7889999999999999987766555545444433
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=86.82 E-value=7.7 Score=37.09 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=67.6
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CC------------CCeEEEccccCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IP------------QLKYLQMDVRDMSF 110 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~------------~v~~~~~d~~~~~~ 110 (252)
+|.-+|+|+ ..++..++..|. +|+.+|.+++.++.+..++.. .+ ++++. .|. .
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~---~- 388 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDY---A- 388 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH---H-
Confidence 789999997 346666677776 999999999998887665421 01 12211 111 1
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhh
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 169 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~ 169 (252)
.-...|+|+-. +.+.+ +-.++++.++-++++|+.+|.-.+-.-+......
T Consensus 389 -~~~~aDlViEa-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~ 438 (715)
T PRK11730 389 -GFERVDVVVEA-VVENP-------KVKAAVLAEVEQKVREDTILASNTSTISISLLAK 438 (715)
T ss_pred -HhcCCCEEEec-ccCcH-------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 11358888854 33434 7889999999999999877765554555444443
|
|
| >PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues | Back alignment and domain information |
|---|
Probab=86.55 E-value=4.6 Score=31.33 Aligned_cols=89 Identities=20% Similarity=0.296 Sum_probs=55.1
Q ss_pred CcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEccccCCC--------CCCCCCe
Q 025475 51 SRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMS--------FFEDESF 116 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~~~~--------~~~~~~~ 116 (252)
..|+.+|||-=.....+.... ...++-+|. |++++.-++.+... .+.+++.+|+.+.. .+.....
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 389999999877777777752 335555555 55666665555432 13678999998632 0234556
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHH
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEV 145 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~ 145 (252)
-++++-+++.++ +++....+++.+
T Consensus 159 tl~i~Egvl~Yl-----~~~~~~~ll~~i 182 (183)
T PF04072_consen 159 TLFIAEGVLMYL-----SPEQVDALLRAI 182 (183)
T ss_dssp EEEEEESSGGGS------HHHHHHHHHHH
T ss_pred eEEEEcchhhcC-----CHHHHHHHHHHh
Confidence 788888889999 777777777654
|
It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A .... |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=86.46 E-value=6.7 Score=31.65 Aligned_cols=94 Identities=22% Similarity=0.380 Sum_probs=58.0
Q ss_pred CCCCcEEEEcccC-cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------CCCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGN-ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~-G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~~D~v~ 120 (252)
.++.+||..|+|. |..+..++.....++++++.++...+.++..-.. .++ +..+.. ......+|+++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~----~~~--~~~~~~~~~~~~~~~~~~~d~vi 206 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD----HVI--DYKEEDLEEELRLTGGGGADVVI 206 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc----eec--cCCcCCHHHHHHHhcCCCCCEEE
Confidence 5677999999985 6666666665335899999998877777554211 111 111110 01235699998
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.... . ...+..+.+.|+++|.++....
T Consensus 207 ~~~~------------~-~~~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 207 DAVG------------G-PETLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred ECCC------------C-HHHHHHHHHhcccCCEEEEEcc
Confidence 5321 0 1346667788899999887653
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=86.13 E-value=15 Score=30.75 Aligned_cols=95 Identities=13% Similarity=0.158 Sum_probs=56.5
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CCCCe----------E-EEccccCCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IPQLK----------Y-LQMDVRDMSFF 111 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~~v~----------~-~~~d~~~~~~~ 111 (252)
+|.-+|+|. +.++..++..|+ +|+.+|.+++.++.+.+.... ...+. + ...+..+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~---- 77 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGF-QTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKA---- 77 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCC-cEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHH----
Confidence 577889884 346666667776 899999999998887654311 00010 0 1111111
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.-...|+|+..-. .+.+....++.++.+.++++..+.+.+
T Consensus 78 ~~~~aD~Vi~avp--------e~~~~k~~~~~~l~~~~~~~~il~~~t 117 (288)
T PRK09260 78 AVADADLVIEAVP--------EKLELKKAVFETADAHAPAECYIATNT 117 (288)
T ss_pred hhcCCCEEEEecc--------CCHHHHHHHHHHHHhhCCCCcEEEEcC
Confidence 1235788885422 122445677888888888876654433
|
|
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=86.07 E-value=6.5 Score=33.63 Aligned_cols=96 Identities=21% Similarity=0.276 Sum_probs=57.7
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC----CC-CCCCCeeEE
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SF-FEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~----~~-~~~~~~D~v 119 (252)
++++.+||-.|+| .|..+..+++. |...++++|.++.-.+.+++.-. ..++...-.+. .. .....+|+|
T Consensus 164 ~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~----~~~v~~~~~~~~~~i~~~~~~~~~d~v 239 (351)
T cd08285 164 IKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA----TDIVDYKNGDVVEQILKLTGGKGVDAV 239 (351)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----ceEecCCCCCHHHHHHHHhCCCCCcEE
Confidence 5667788888876 35666666665 55469999999887777765311 11111111111 00 123458988
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+..- .-...+..+.+.|+++|.++...
T Consensus 240 ld~~-------------g~~~~~~~~~~~l~~~G~~v~~g 266 (351)
T cd08285 240 IIAG-------------GGQDTFEQALKVLKPGGTISNVN 266 (351)
T ss_pred EECC-------------CCHHHHHHHHHHhhcCCEEEEec
Confidence 8421 11235778888899999988654
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=86.00 E-value=4.5 Score=32.95 Aligned_cols=90 Identities=22% Similarity=0.330 Sum_probs=55.1
Q ss_pred CCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHH-------------------HHHHHhhcC-CCCCeEEEccccC
Q 025475 50 SSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAI-------------------DMMKMKYEE-IPQLKYLQMDVRD 107 (252)
Q Consensus 50 ~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i-------------------~~a~~~~~~-~~~v~~~~~d~~~ 107 (252)
..+|+-+|+| .|+++...+.+ |..+++.+|.+.-.+ +.+++++.. +|++++...+.+-
T Consensus 30 ~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv~vm~eri~~InP~c~V~~~~~f~ 109 (263)
T COG1179 30 QAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKVEVMKERIKQINPECEVTAINDFI 109 (263)
T ss_pred hCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHHHHHHHHHHhhCCCceEeehHhhh
Confidence 4579999986 58877766554 788999999865332 233333332 3456655554432
Q ss_pred CC----CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHc
Q 025475 108 MS----FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRL 148 (252)
Q Consensus 108 ~~----~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~ 148 (252)
.+ ++....||.|+- +++.+ .....++..+++.
T Consensus 110 t~en~~~~~~~~~DyvID--aiD~v-------~~Kv~Li~~c~~~ 145 (263)
T COG1179 110 TEENLEDLLSKGFDYVID--AIDSV-------RAKVALIAYCRRN 145 (263)
T ss_pred CHhHHHHHhcCCCCEEEE--chhhh-------HHHHHHHHHHHHc
Confidence 21 134457999984 45555 6666677766653
|
|
| >PRK06701 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.87 E-value=6.7 Score=32.73 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=58.9
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHH-HHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSV-AIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~-~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
++++|-.|++.|. ++..++++|. +++.++.++. ..+.....+.. ..++.++.+|+.+.... ..+.
T Consensus 46 ~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~~~ 124 (290)
T PRK06701 46 GKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDAVEETVRELGR 124 (290)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 4578888876542 5555666676 7888887642 23333233322 23577888998764311 0146
Q ss_pred eeEEEeccchhhh--cCCCCChh-----------hHHHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSL--MCGTNAPI-----------SASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~--~~~~~~~~-----------~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.|+|+.+...... .....+.+ ....+++.+.+.++++|.+++..
T Consensus 125 iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 125 LDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred CCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 7988866543211 00111112 22444455566666777766644
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.64 E-value=18 Score=29.74 Aligned_cols=75 Identities=15% Similarity=0.174 Sum_probs=45.7
Q ss_pred CCcEEEEcccC----cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCGN----AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~----G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
+.++|-.|++. |. .+..+++.|. +++.++.+....+.+++.....+.+.++.+|+.+.... .-++
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 84 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQLGSDIVLPCDVAEDASIDAMFAELGKVWPK 84 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecchhHHHHHHHHHhccCCceEeecCCCCHHHHHHHHHHHHhhcCC
Confidence 45788888764 32 5666777776 78888876433333333322223456788898774311 1256
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+..+
T Consensus 85 iD~linnAg~ 94 (262)
T PRK07984 85 FDGFVHSIGF 94 (262)
T ss_pred CCEEEECCcc
Confidence 8999987654
|
|
| >PRK07576 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.31 E-value=7.5 Score=31.81 Aligned_cols=73 Identities=19% Similarity=0.290 Sum_probs=45.0
Q ss_pred CCcEEEEcccC--cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGN--AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~--G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
+.++|-.|++. |. ++..++..|. +|++++.++..++.....+.. ..++.++.+|+.+.... ..+..
T Consensus 9 ~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~~~~~~~~i 87 (264)
T PRK07576 9 GKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFAQIADEFGPI 87 (264)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 55788888643 22 4445556666 799999988766554443322 23567788888764311 12457
Q ss_pred eEEEecc
Q 025475 117 DAVIDKG 123 (252)
Q Consensus 117 D~v~~~~ 123 (252)
|+++.+.
T Consensus 88 D~vi~~a 94 (264)
T PRK07576 88 DVLVSGA 94 (264)
T ss_pred CEEEECC
Confidence 9998654
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=85.15 E-value=12 Score=31.23 Aligned_cols=91 Identities=19% Similarity=0.283 Sum_probs=55.4
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CC------------CCeEEEccccCCC
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IP------------QLKYLQMDVRDMS 109 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~------------~v~~~~~d~~~~~ 109 (252)
.+|.-+|+|. +.++..++..|. +|+..|.+++.++.+...... .. ++++ ..+. .
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~---~ 79 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARIST-ATDL---E 79 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEe-eCCH---H
Confidence 4688889984 346666677776 899999999988776543210 01 1111 1122 1
Q ss_pred CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 110 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 110 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
. -...|+|+..-. .+.+....+++++...++++..++
T Consensus 80 -~-~~~aD~Vieavp--------e~~~~k~~~~~~l~~~~~~~~ii~ 116 (292)
T PRK07530 80 -D-LADCDLVIEAAT--------EDETVKRKIFAQLCPVLKPEAILA 116 (292)
T ss_pred -H-hcCCCEEEEcCc--------CCHHHHHHHHHHHHhhCCCCcEEE
Confidence 1 135788885421 122446677888888888877665
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=85.15 E-value=7.4 Score=37.34 Aligned_cols=103 Identities=20% Similarity=0.221 Sum_probs=68.1
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CC------------CCeEEEccccCCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IP------------QLKYLQMDVRDMSF 110 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~------------~v~~~~~d~~~~~~ 110 (252)
+|--+|+|+ +.++..++..|. +|+..|.+++.++.+..++.. .+ ++++. .|. .
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~---~- 410 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDY---S- 410 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCC-cEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCH---H-
Confidence 788999995 345666667776 999999999999887765521 01 11111 111 1
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhh
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 169 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~ 169 (252)
.-...|+|+-. +.+.+ +-.++++.++-++++|+.+|.-.+-.-+......
T Consensus 411 -~~~~aDlViEA-v~E~l-------~~K~~vf~~l~~~~~~~~ilasNTSsl~i~~la~ 460 (737)
T TIGR02441 411 -GFKNADMVIEA-VFEDL-------SLKHKVIKEVEAVVPPHCIIASNTSALPIKDIAA 460 (737)
T ss_pred -HhccCCeehhh-ccccH-------HHHHHHHHHHHhhCCCCcEEEEcCCCCCHHHHHh
Confidence 11357888853 33444 7889999999999999988776565555544443
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=85.13 E-value=4.4 Score=35.12 Aligned_cols=98 Identities=14% Similarity=0.186 Sum_probs=58.6
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-----cccC-CCCCCCCCee
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-----DVRD-MSFFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-----d~~~-~~~~~~~~~D 117 (252)
.+.++.+||-.|+|. |..+..+++. |..+++++|.++.-.+.+++.-.. .++.. +..+ ......+.+|
T Consensus 182 ~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~----~~i~~~~~~~~~~~~v~~~~~~g~d 257 (368)
T TIGR02818 182 KVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGAT----DCVNPNDYDKPIQEVIVEITDGGVD 257 (368)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCC----eEEcccccchhHHHHHHHHhCCCCC
Confidence 356778999999863 6666666665 554799999999988888654211 11111 1100 0001123588
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
+|+..- .-...+....+.++++ |.+++...
T Consensus 258 ~vid~~-------------G~~~~~~~~~~~~~~~~G~~v~~g~ 288 (368)
T TIGR02818 258 YSFECI-------------GNVNVMRAALECCHKGWGESIIIGV 288 (368)
T ss_pred EEEECC-------------CCHHHHHHHHHHhhcCCCeEEEEec
Confidence 888421 1123566677888886 98877654
|
The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols. |
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.88 E-value=8.4 Score=30.89 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=45.3
Q ss_pred CCcEEEEcccC--cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC----C-----CCCe
Q 025475 50 SSRVLMVGCGN--AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF----E-----DESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~--G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~----~-----~~~~ 116 (252)
+.++|-.|++. |. ++..++++|. ++++++.+++..+.....+.. ..++.++.+|+.+.... . -+..
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 85 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFDAAAAALGGL 85 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 45788777643 22 3344455565 799999887765555444322 23678888998774311 0 1468
Q ss_pred eEEEeccc
Q 025475 117 DAVIDKGT 124 (252)
Q Consensus 117 D~v~~~~~ 124 (252)
|+|+.+..
T Consensus 86 d~vi~~ag 93 (250)
T PRK12939 86 DGLVNNAG 93 (250)
T ss_pred CEEEECCC
Confidence 98887654
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.86 E-value=8.1 Score=32.62 Aligned_cols=89 Identities=20% Similarity=0.212 Sum_probs=53.4
Q ss_pred CcEEEEcccC--cHhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.+|.-+|+|. +.++..+...|. .+++++|.+++..+.++.. +.......+..+ .-...|+|+..-..
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~~~~~~~~~~~----~~~~aDvViiavp~-- 76 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GLGDRVTTSAAE----AVKGADLVILCVPV-- 76 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CCCceecCCHHH----HhcCCCEEEECCCH--
Confidence 4788899885 345566666663 4899999999877766542 111111111111 11357999865332
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
.....++.++...++++..++.
T Consensus 77 --------~~~~~v~~~l~~~l~~~~iv~d 98 (307)
T PRK07502 77 --------GASGAVAAEIAPHLKPGAIVTD 98 (307)
T ss_pred --------HHHHHHHHHHHhhCCCCCEEEe
Confidence 3335667777777888876544
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=84.81 E-value=17 Score=30.45 Aligned_cols=92 Identities=17% Similarity=0.226 Sum_probs=56.3
Q ss_pred CcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-------CCCCC-----------eEEEccccCCCC
Q 025475 51 SRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-------EIPQL-----------KYLQMDVRDMSF 110 (252)
Q Consensus 51 ~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~-------~~~~v-----------~~~~~d~~~~~~ 110 (252)
.+|.-+|+|. | .++..++..|. +|+++|.+++.++.+++.+. ..+.+ .....+. .
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~-~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~---~- 79 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGM-DVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNL---E- 79 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCH---H-
Confidence 4688889984 3 56666667675 89999999988876655431 10100 0111111 1
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
.-...|+|+.. -..+++....++.++...++++..++
T Consensus 80 -~~~~aD~Viea--------v~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 80 -ELRDADFIIEA--------IVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred -HhCCCCEEEEc--------CccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 11347888853 22234667788888888888876554
|
|
| >PRK07806 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.19 E-value=11 Score=30.31 Aligned_cols=109 Identities=12% Similarity=0.072 Sum_probs=57.1
Q ss_pred CCcEEEEcccC--cH-hHHHHHHcCCCcEEEEeCCH-HHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCGN--AL-MSEDMVKDGYEDIVNIDISS-VAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~--G~-~~~~l~~~~~~~v~~vD~s~-~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
+.++|-.|+.. |. ++..+++.|. +|++++.+. ...+.....++. ..++.++.+|+.+.... .-+.
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~ 84 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAALMDTAREEFGG 84 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHhCCC
Confidence 45788888743 33 4444555665 788887754 233333222221 23567888898775311 0135
Q ss_pred eeEEEeccchhhhcC-C-----CCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSLMC-G-----TNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~-~-----~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.|+|+.+........ . ..+......+++.+...++.+|.+++..
T Consensus 85 ~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 85 LDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred CcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 788876543211000 0 0111224556677777776667665543
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=84.04 E-value=12 Score=35.74 Aligned_cols=104 Identities=20% Similarity=0.176 Sum_probs=67.3
Q ss_pred CcEEEEcccC-c-HhHHHHH-HcCCCcEEEEeCCHHHHHHHHHhhcC-------CC------------CCeEEEccccCC
Q 025475 51 SRVLMVGCGN-A-LMSEDMV-KDGYEDIVNIDISSVAIDMMKMKYEE-------IP------------QLKYLQMDVRDM 108 (252)
Q Consensus 51 ~~vLD~G~G~-G-~~~~~l~-~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~------------~v~~~~~d~~~~ 108 (252)
.+|.-+|+|+ | .++..++ ..|. .|+..|.+++.++.+..++.. .+ ++++. .| +
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~---~ 384 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TD---Y 384 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CC---h
Confidence 3799999996 3 4555566 5566 999999999998887665421 01 12211 11 1
Q ss_pred CCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhh
Q 025475 109 SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 169 (252)
Q Consensus 109 ~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~ 169 (252)
. .-...|+|+-. +.+.+ +-.++++.++-++++|+.+|.-.+-.-+......
T Consensus 385 ~--~~~~aDlViEa-v~E~~-------~~K~~v~~~le~~~~~~~ilasnTS~l~i~~la~ 435 (708)
T PRK11154 385 R--GFKHADVVIEA-VFEDL-------ALKQQMVAEVEQNCAPHTIFASNTSSLPIGQIAA 435 (708)
T ss_pred H--HhccCCEEeec-ccccH-------HHHHHHHHHHHhhCCCCcEEEECCCCCCHHHHHH
Confidence 1 11358888854 33434 7889999999999999988766555555444433
|
|
| >PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes | Back alignment and domain information |
|---|
Probab=83.72 E-value=1.9 Score=35.22 Aligned_cols=56 Identities=16% Similarity=0.218 Sum_probs=39.5
Q ss_pred chhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh
Q 025475 36 YSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY 92 (252)
Q Consensus 36 ~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~ 92 (252)
...+.+.|...++ ...+++|+-||+|.++..+...+ .+++.-|+++..+...+..+
T Consensus 5 K~~l~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~-~~vi~ND~~~~l~~~~~~~l 62 (260)
T PF02086_consen 5 KRKLAKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPG-KRVIINDINPDLINFWKAVL 62 (260)
T ss_dssp SGGGHHHHHHHS-S-S-SEEEETT-TTSHHHHCC---S-SEEEEEES-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCEEEEEecchhHHHHHhcccc-cceeeeechHHHHHHHHHHH
Confidence 3456777777777 57799999999999999887654 48999999998887777544
|
There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B. |
| >cd08300 alcohol_DH_class_III class III alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=83.34 E-value=9.3 Score=33.06 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=57.9
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc-----ccC-CCCCCCCCeeE
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-----VRD-MSFFEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~D~ 118 (252)
+.++.+||-.|+| .|..+..+++. |...++++|.++.-.+.+++.-. -.++... ..+ ......+.+|+
T Consensus 184 ~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa----~~~i~~~~~~~~~~~~v~~~~~~g~d~ 259 (368)
T cd08300 184 VEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGA----TDCVNPKDHDKPIQQVLVEMTDGGVDY 259 (368)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----CEEEcccccchHHHHHHHHHhCCCCcE
Confidence 5677889988875 36666666665 55479999999988887764311 1222111 100 00012236899
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
|+..-. -...+....+.|+++ |.+++...
T Consensus 260 vid~~g-------------~~~~~~~a~~~l~~~~G~~v~~g~ 289 (368)
T cd08300 260 TFECIG-------------NVKVMRAALEACHKGWGTSVIIGV 289 (368)
T ss_pred EEECCC-------------ChHHHHHHHHhhccCCCeEEEEcc
Confidence 985211 123566677888887 98887654
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=83.31 E-value=17 Score=30.65 Aligned_cols=96 Identities=14% Similarity=0.122 Sum_probs=57.3
Q ss_pred hCCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 46 YIPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 46 ~~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.+.++.+||-.|+| .|..+..+++. |. ++++++.++...+.+++.-. ..++...-..........+|+++...
T Consensus 159 ~~~~~~~vlI~g~g~iG~~~~~~a~~~G~-~v~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~d~vi~~~ 233 (330)
T cd08245 159 GPRPGERVAVLGIGGLGHLAVQYARAMGF-ETVAITRSPDKRELARKLGA----DEVVDSGAELDEQAAAGGADVILVTV 233 (330)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhCC----cEEeccCCcchHHhccCCCCEEEECC
Confidence 35667788889886 56666666665 54 79999999988777754211 11111110000000123588888421
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. ....+..+.+.|+++|.++...
T Consensus 234 ~-------------~~~~~~~~~~~l~~~G~~i~~~ 256 (330)
T cd08245 234 V-------------SGAAAEAALGGLRRGGRIVLVG 256 (330)
T ss_pred C-------------cHHHHHHHHHhcccCCEEEEEC
Confidence 1 1235677788899999888764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=83.26 E-value=12 Score=31.76 Aligned_cols=97 Identities=19% Similarity=0.280 Sum_probs=56.3
Q ss_pred hCCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc---cccC-CCC-CCCCCeeE
Q 025475 46 YIPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DVRD-MSF-FEDESFDA 118 (252)
Q Consensus 46 ~~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~---d~~~-~~~-~~~~~~D~ 118 (252)
.++++.+||..|+| .|..+..+++. |...+++++.++...+.+++.-. ..++.. +..+ +.. .....+|+
T Consensus 164 ~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~----~~vi~~~~~~~~~~i~~~~~~~~~d~ 239 (347)
T cd05278 164 GIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGA----TDIINPKNGDIVEQILELTGGRGVDC 239 (347)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCC----cEEEcCCcchHHHHHHHHcCCCCCcE
Confidence 35567788887765 36666666665 43478888888877776664321 111111 1111 000 12356898
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++.... ....+..+.+.|+++|.++...
T Consensus 240 vld~~g-------------~~~~~~~~~~~l~~~G~~v~~g 267 (347)
T cd05278 240 VIEAVG-------------FEETFEQAVKVVRPGGTIANVG 267 (347)
T ss_pred EEEccC-------------CHHHHHHHHHHhhcCCEEEEEc
Confidence 885311 1135777788999999987654
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=83.25 E-value=5.5 Score=32.11 Aligned_cols=67 Identities=16% Similarity=0.300 Sum_probs=46.3
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEec
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDK 122 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~ 122 (252)
+++-+|||. +.++..|.+.|+ .++.+|.+++.++..... ......+++|..+... ..-..+|++++.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~~~~~~~~~---~~~~~~v~gd~t~~~~L~~agi~~aD~vva~ 73 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEERVEEFLAD---ELDTHVVIGDATDEDVLEEAGIDDADAVVAA 73 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHHHHHHHhhh---hcceEEEEecCCCHHHHHhcCCCcCCEEEEe
Confidence 577889984 346666666666 899999999887763331 1246888888887531 334578988864
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=82.98 E-value=12 Score=35.06 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=58.4
Q ss_pred CcEEEEcccC-cHhH-HHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEeccch
Q 025475 51 SRVLMVGCGN-ALMS-EDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDKGTL 125 (252)
Q Consensus 51 ~~vLD~G~G~-G~~~-~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~~~l 125 (252)
.+|+-+|+|. |... ..+.+++. +++.+|.+++.++.+++. ....+.+|..+... ..-++.|++++...
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~~v~~~~~~-----g~~v~~GDat~~~~L~~agi~~A~~vv~~~~- 473 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKM-RITVLERDISAVNLMRKY-----GYKVYYGDATQLELLRAAGAEKAEAIVITCN- 473 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHHHHHHHHhC-----CCeEEEeeCCCHHHHHhcCCccCCEEEEEeC-
Confidence 3677777774 5433 33344455 899999999999988753 46789999987531 23346788776321
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+++.-..++.. .+.+.|+..+++....
T Consensus 474 --------d~~~n~~i~~~-~r~~~p~~~IiaRa~~ 500 (601)
T PRK03659 474 --------EPEDTMKIVEL-CQQHFPHLHILARARG 500 (601)
T ss_pred --------CHHHHHHHHHH-HHHHCCCCeEEEEeCC
Confidence 22222333333 3446677777765543
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=82.24 E-value=18 Score=30.16 Aligned_cols=97 Identities=16% Similarity=0.264 Sum_probs=54.1
Q ss_pred cEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 52 RVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 52 ~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
+|+-+|+|. | .++..+++.|. +|+.++.+++.++..++.-... ........-..+.. ....+|+|+..--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~d~vila~k--- 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPA--ELGPQDLVILAVK--- 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECChHHHHHHHHcCCcccCCceeecccCCCChh--HcCCCCEEEEecc---
Confidence 588899984 3 35555666665 8999999777666555431100 00000000011111 1256899886432
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..+...+++.+...+.++..++....+
T Consensus 76 -------~~~~~~~~~~l~~~l~~~~~iv~~~nG 102 (304)
T PRK06522 76 -------AYQLPAALPSLAPLLGPDTPVLFLQNG 102 (304)
T ss_pred -------cccHHHHHHHHhhhcCCCCEEEEecCC
Confidence 134567788888888777666655443
|
|
| >TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent | Back alignment and domain information |
|---|
Probab=82.22 E-value=14 Score=32.39 Aligned_cols=110 Identities=11% Similarity=0.134 Sum_probs=60.4
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE---ccccC-CCC-CCCCCeeEE
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ---MDVRD-MSF-FEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~---~d~~~-~~~-~~~~~~D~v 119 (252)
+.++.+||-.|+| .|..+..+++. |...++.+|.++.-++.+++.-. . .+.. .+..+ +.. .....+|+|
T Consensus 183 ~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga---~-~v~~~~~~~~~~~v~~~~~~~g~Dvv 258 (393)
T TIGR02819 183 VGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC---E-TVDLSKDATLPEQIEQILGEPEVDCA 258 (393)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC---e-EEecCCcccHHHHHHHHcCCCCCcEE
Confidence 5667788778886 36666666665 55457777888887887776421 1 1111 01111 100 122358998
Q ss_pred EeccchhhhcC-CCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMC-GTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+..-.-..... -.....+....++...+++++||.+++...
T Consensus 259 id~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~ 300 (393)
T TIGR02819 259 VDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGL 300 (393)
T ss_pred EECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeee
Confidence 85322110000 000001223578888899999999988665
|
Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent. |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.04 E-value=5.3 Score=34.37 Aligned_cols=96 Identities=18% Similarity=0.136 Sum_probs=59.2
Q ss_pred CCCCCcEEEEcc-c-CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc----cccC-CCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGC-G-NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM----DVRD-MSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~-G-~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~----d~~~-~~~~~~~~~D~v 119 (252)
+.++.+||-.|+ | .|..+..+++....++++++.++.-.+.++..+.. -.++.. +..+ ......+.+|+|
T Consensus 156 ~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa---~~vi~~~~~~~~~~~i~~~~~~gvD~v 232 (348)
T PLN03154 156 PKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF---DEAFNYKEEPDLDAALKRYFPEGIDIY 232 (348)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC---CEEEECCCcccHHHHHHHHCCCCcEEE
Confidence 567789999987 3 67788877776323799999998877776633311 122211 1111 000112358988
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.. . . ...+..+.+.|+++|.+++..
T Consensus 233 ~d~-----v-------G--~~~~~~~~~~l~~~G~iv~~G 258 (348)
T PLN03154 233 FDN-----V-------G--GDMLDAALLNMKIHGRIAVCG 258 (348)
T ss_pred EEC-----C-------C--HHHHHHHHHHhccCCEEEEEC
Confidence 853 1 1 135677888999999988754
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=81.97 E-value=21 Score=30.13 Aligned_cols=95 Identities=11% Similarity=0.060 Sum_probs=58.3
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc----ccC-CCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD----VRD-MSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d----~~~-~~~~~~~~~D~v 119 (252)
+.++.+||-.|+ |.|..+..+++....++++++.+++-.+.+++.-. -.++..+ ..+ ......+.+|+|
T Consensus 136 ~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lGa----~~vi~~~~~~~~~~~~~~~~~~gvdvv 211 (325)
T TIGR02825 136 VKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLGF----DVAFNYKTVKSLEETLKKASPDGYDCY 211 (325)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC----CEEEeccccccHHHHHHHhCCCCeEEE
Confidence 567789998884 46778777777632379999999888777765311 1122111 111 000122468998
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.. . . ...+....++|+++|.++...
T Consensus 212 ~d~-----~-------G--~~~~~~~~~~l~~~G~iv~~G 237 (325)
T TIGR02825 212 FDN-----V-------G--GEFSNTVIGQMKKFGRIAICG 237 (325)
T ss_pred EEC-----C-------C--HHHHHHHHHHhCcCcEEEEec
Confidence 852 1 1 123567788999999998754
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.94 E-value=25 Score=29.03 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=44.0
Q ss_pred CCcEEEEccc----CcH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCG----NAL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G----~G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
++.+|-.|++ .|. .+..+++.|. +++.++.+....+.+++.....+...++++|+.+.... ..+.
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~i~~~~g~ 83 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSLAESLKKDLGK 83 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHHHHHHHHHcCC
Confidence 4578888874 332 5555666676 78888888532222222222112115678898875311 1357
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+..+
T Consensus 84 iDilVnnAG~ 93 (274)
T PRK08415 84 IDFIVHSVAF 93 (274)
T ss_pred CCEEEECCcc
Confidence 8999887654
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.93 E-value=19 Score=30.38 Aligned_cols=40 Identities=18% Similarity=0.363 Sum_probs=30.6
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHh
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMK 91 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~ 91 (252)
.+|.-+|+|. +.++..++..|. +|+++|.+++.++.++..
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~~~~~~~~~~ 46 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVMEGALERARGV 46 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHH
Confidence 4688889984 456666666665 899999999888877764
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.84 E-value=19 Score=29.63 Aligned_cols=75 Identities=17% Similarity=0.165 Sum_probs=44.8
Q ss_pred CCcEEEEcccC--c---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCGN--A---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~--G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
+.++|-.|++. | ..+..+++.|. +|+.++.+....+..++.....+....+++|+.+.... .-+.
T Consensus 7 ~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 85 (271)
T PRK06505 7 GKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAVFEALEKKWGK 85 (271)
T ss_pred CCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 45788888764 3 35666667776 78888876543333333222222234678888875311 1257
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+...
T Consensus 86 iD~lVnnAG~ 95 (271)
T PRK06505 86 LDFVVHAIGF 95 (271)
T ss_pred CCEEEECCcc
Confidence 8999887654
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.77 E-value=21 Score=30.55 Aligned_cols=91 Identities=15% Similarity=0.223 Sum_probs=57.6
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CC--------CCeEEEccccCCCCCCC
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IP--------QLKYLQMDVRDMSFFED 113 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~--------~v~~~~~d~~~~~~~~~ 113 (252)
.+|.-+|+|+ ..++..++..|. +|+..|.+++.++.++..+.. .. ++++. .++.+ .-
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~-~~l~~----av 81 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFV-ATIEA----CV 81 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceec-CCHHH----Hh
Confidence 4788899994 456666777776 999999999988776554321 00 11111 11111 11
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEE
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 155 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l 155 (252)
...|+|+.. + ..+.+-...++.++-+.++++-.|
T Consensus 82 ~~aDlViEa-v-------pE~l~vK~~lf~~l~~~~~~~aIl 115 (321)
T PRK07066 82 ADADFIQES-A-------PEREALKLELHERISRAAKPDAII 115 (321)
T ss_pred cCCCEEEEC-C-------cCCHHHHHHHHHHHHHhCCCCeEE
Confidence 357888854 2 223367788999999999988743
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=81.40 E-value=17 Score=30.35 Aligned_cols=92 Identities=20% Similarity=0.341 Sum_probs=55.6
Q ss_pred cEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--------C------------CCCeEEEccccCCC
Q 025475 52 RVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------I------------PQLKYLQMDVRDMS 109 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--------~------------~~v~~~~~d~~~~~ 109 (252)
+|.-+|+|. +.++..++..|. +|+.+|.+++.++.++..... . .+++ ...|..+
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~d~~~-- 80 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRIT-LTTDLAE-- 80 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeE-EeCCHHH--
Confidence 688889984 345555666665 899999999988887765311 0 0111 1112111
Q ss_pred CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 110 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 110 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
.-...|+|+..-. + +.+....+++++...++++-.+..
T Consensus 81 --a~~~aDlVieavp-e-------~~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 81 --AVKDADLVIEAVP-E-------DPEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred --HhcCCCEEEEecc-C-------CHHHHHHHHHHHHhhCCCCCEEEE
Confidence 1135788886432 1 124567888888888877665533
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.35 E-value=20 Score=29.06 Aligned_cols=73 Identities=8% Similarity=0.137 Sum_probs=44.7
Q ss_pred CCcEEEEccc----CcH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCG----NAL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G----~G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
++++|-.|++ .|. .+..+++.|. +|+.++.+....+..++... ..+.++++|+.+.... .-+.
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 83 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQNDRMKKSLQKLVD--EEDLLVECDVASDESIERAFATIKERVGK 83 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCchHHHHHHHhhcc--CceeEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 4578888875 332 5555666676 78888877543333332211 2567888999775311 1257
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+..+
T Consensus 84 iD~lv~nAg~ 93 (252)
T PRK06079 84 IDGIVHAIAY 93 (252)
T ss_pred CCEEEEcccc
Confidence 8999887654
|
|
| >cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.24 E-value=5.6 Score=34.38 Aligned_cols=97 Identities=18% Similarity=0.238 Sum_probs=56.6
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc-----ccC-CCCCCCCCeeE
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-----VRD-MSFFEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~D~ 118 (252)
+.++.+||-.|+| .|..+..+++. |..+++++|.++.-.+.+++.-.. .++... ..+ ........+|+
T Consensus 182 ~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~----~~i~~~~~~~~~~~~~~~~~~~g~d~ 257 (365)
T cd08277 182 VEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGAT----DFINPKDSDKPVSEVIREMTGGGVDY 257 (365)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCC----cEeccccccchHHHHHHHHhCCCCCE
Confidence 5677889988875 35555555555 554799999998888877653111 111110 000 00011245899
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
|+..-. -...+....+.|+++ |.+++...
T Consensus 258 vid~~g-------------~~~~~~~~~~~l~~~~G~~v~~g~ 287 (365)
T cd08277 258 SFECTG-------------NADLMNEALESTKLGWGVSVVVGV 287 (365)
T ss_pred EEECCC-------------ChHHHHHHHHhcccCCCEEEEEcC
Confidence 884211 123567777888875 98877653
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i |
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=80.99 E-value=18 Score=29.54 Aligned_cols=95 Identities=21% Similarity=0.283 Sum_probs=56.3
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.+.++.++|-.|+|. |..+..+++. |..++++++.+++..+.+++.-.. . .+.... ... .....+|+|+...
T Consensus 94 ~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~-~--~~~~~~-~~~--~~~~~~d~vl~~~ 167 (277)
T cd08255 94 EPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA-D--PVAADT-ADE--IGGRGADVVIEAS 167 (277)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC-c--cccccc-hhh--hcCCCCCEEEEcc
Confidence 355677888888764 5566666655 442399999998887766654200 0 011000 011 1234589888421
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. ....+....+.|+++|.++...
T Consensus 168 ~-------------~~~~~~~~~~~l~~~g~~~~~g 190 (277)
T cd08255 168 G-------------SPSALETALRLLRDRGRVVLVG 190 (277)
T ss_pred C-------------ChHHHHHHHHHhcCCcEEEEEe
Confidence 1 1235677788899999987654
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >cd08301 alcohol_DH_plants Plant alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.80 E-value=7.7 Score=33.51 Aligned_cols=98 Identities=14% Similarity=0.227 Sum_probs=57.4
Q ss_pred hCCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc-----ccC-CCCCCCCCee
Q 025475 46 YIPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD-----VRD-MSFFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d-----~~~-~~~~~~~~~D 117 (252)
.+.++.+||-.|+| .|..+..+++. |..++++++.+++-.+.+++.-. ..++... ..+ ......+.+|
T Consensus 184 ~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~~~v~~~~~~~~d 259 (369)
T cd08301 184 KVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGV----TEFVNPKDHDKPVQEVIAEMTGGGVD 259 (369)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC----ceEEcccccchhHHHHHHHHhCCCCC
Confidence 35677889999875 35566666655 54479999999988888765311 1122111 100 0001223588
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
+|+..- .....+....+.+++| |.+++...
T Consensus 260 ~vid~~-------------G~~~~~~~~~~~~~~~~g~~v~~g~ 290 (369)
T cd08301 260 YSFECT-------------GNIDAMISAFECVHDGWGVTVLLGV 290 (369)
T ss_pred EEEECC-------------CChHHHHHHHHHhhcCCCEEEEECc
Confidence 888421 1133566667788896 98887654
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the |
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.64 E-value=9.3 Score=32.71 Aligned_cols=75 Identities=13% Similarity=0.197 Sum_probs=49.6
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
+.+||-.|++.|. ++..+++.|. +|+.++.+++.++.....+.. ..++.++.+|+.+.... ..+..
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~i 85 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALATQAASFGGRI 85 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHhcCCC
Confidence 4578888875542 5555666676 799999998877666555433 23567788888764311 12568
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+++.+...
T Consensus 86 D~lVnnAG~ 94 (330)
T PRK06139 86 DVWVNNVGV 94 (330)
T ss_pred CEEEECCCc
Confidence 999887643
|
|
| >COG0863 DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=80.62 E-value=6.9 Score=32.66 Aligned_cols=54 Identities=17% Similarity=0.215 Sum_probs=45.5
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
.+.+.....++..|||.-+|+|..+......+. .++++|+++.-++.+.+++..
T Consensus 213 ~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r-~~ig~e~~~~y~~~~~~r~~~ 266 (302)
T COG0863 213 ERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGR-RFIGIEINPEYVEVALKRLQE 266 (302)
T ss_pred HHHHHhcCCCCCEEeecCCCCChHHHHHHHcCC-ceEEEecCHHHHHHHHHHHHh
Confidence 445555566788999999999999998888865 899999999999999998853
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.38 E-value=18 Score=29.07 Aligned_cols=75 Identities=15% Similarity=0.224 Sum_probs=45.9
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
+.++|-.|+..| .++..+++.|. ++++++.++...+.....+.. ..++.++.+|+.+.... ..+..
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~i 84 (250)
T PRK07774 6 DKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAMADATVSAFGGI 84 (250)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHhCCC
Confidence 457888886432 24444555665 899999987665554444322 23567788888875311 11358
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+|+.+...
T Consensus 85 d~vi~~ag~ 93 (250)
T PRK07774 85 DYLVNNAAI 93 (250)
T ss_pred CEEEECCCC
Confidence 999986653
|
|
| >cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase | Back alignment and domain information |
|---|
Probab=80.37 E-value=24 Score=31.04 Aligned_cols=99 Identities=19% Similarity=0.305 Sum_probs=58.1
Q ss_pred CCCCCcEEEEc-cc-CcHhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEcccc---CCC----CC
Q 025475 47 IPTSSRVLMVG-CG-NALMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVR---DMS----FF 111 (252)
Q Consensus 47 ~~~~~~vLD~G-~G-~G~~~~~l~~~---~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~---~~~----~~ 111 (252)
+.++.+|+-+| +| .|..+..+++. |..+++++|.++.-++.+++...... .......|.. ++. ..
T Consensus 173 ~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~ 252 (410)
T cd08238 173 IKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRLFPPEAASRGIELLYVNPATIDDLHATLMEL 252 (410)
T ss_pred CCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHhccccccccCceEEEECCCccccHHHHHHHH
Confidence 45667888887 44 57788777776 33479999999999888887532100 1111111111 110 01
Q ss_pred -CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 112 -EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 112 -~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
....+|+|+..-. -...+....+.++++|.+++.
T Consensus 253 t~g~g~D~vid~~g-------------~~~~~~~a~~~l~~~G~~v~~ 287 (410)
T cd08238 253 TGGQGFDDVFVFVP-------------VPELVEEADTLLAPDGCLNFF 287 (410)
T ss_pred hCCCCCCEEEEcCC-------------CHHHHHHHHHHhccCCeEEEE
Confidence 2235888885211 123567778889988866553
|
L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found |
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=80.27 E-value=8.4 Score=34.19 Aligned_cols=106 Identities=13% Similarity=0.148 Sum_probs=57.6
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcccc------------CCCCCCCCCe
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVR------------DMSFFEDESF 116 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~------------~~~~~~~~~~ 116 (252)
++|.-+|.|. +.++..+++.|+ +|+++|.++..++..+... +.+...++. ... -.....
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~-~V~~~D~~~~~v~~l~~g~-----~~~~e~~l~~~l~~~~~~g~l~~~-~~~~~a 76 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQK-QVIGVDINQHAVDTINRGE-----IHIVEPDLDMVVKTAVEGGYLRAT-TTPEPA 76 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCC-EEEEEeCCHHHHHHHHCCC-----CCcCCCCHHHHHHHHhhcCceeee-cccccC
Confidence 4677888884 456666777776 8999999999877643211 111111100 000 011246
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+|+..-.--.-.-+.++.......++.+...|++|-.+++.+...|
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~p 123 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPV 123 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCC
Confidence 78775422110000011225566777888888888776666554444
|
|
| >COG4017 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=80.19 E-value=4.1 Score=31.96 Aligned_cols=69 Identities=16% Similarity=0.322 Sum_probs=47.0
Q ss_pred CCCCcEEEEccc-CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCG-NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G-~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.+.++|-+|+- +|.....+++. ..+|+.+|+.|.+-.... ++++|... .. +..+.+|+|+.--.+.
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~-~~~vtv~Di~p~~r~~lp------~~v~Fr~~----~~-~~~G~~DlivDlTGlG 110 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSK-ADKVTVVDIHPFMRGFLP------NNVKFRNL----LK-FIRGEVDLIVDLTGLG 110 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcc-cceEEEecCCHHHHhcCC------CCccHhhh----cC-CCCCceeEEEeccccC
Confidence 456799999996 79988888877 569999999997643322 24444332 22 4567789988755444
Q ss_pred hh
Q 025475 127 SL 128 (252)
Q Consensus 127 ~~ 128 (252)
-+
T Consensus 111 G~ 112 (254)
T COG4017 111 GI 112 (254)
T ss_pred CC
Confidence 33
|
|
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.19 E-value=9 Score=33.13 Aligned_cols=96 Identities=22% Similarity=0.228 Sum_probs=52.6
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE-ccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ-MDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~-~d~~~~~~~~~~~~D~v~~~~ 123 (252)
..++.+||-.|+| .|..+..+++. |. ++++++.++.-...+.+.+ +...++. .+........ +.+|+|+..-
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga-~vi~~~~~~~~~~~~~~~~---Ga~~vi~~~~~~~~~~~~-~~~D~vid~~ 255 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGL-KVTVISSSSNKEDEAINRL---GADSFLVSTDPEKMKAAI-GTMDYIIDTV 255 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCcchhhhHHHhC---CCcEEEcCCCHHHHHhhc-CCCCEEEECC
Confidence 3467788889886 36677777766 44 7888887765332221111 1111111 0101111011 2478888421
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. -...+..+.+.|+++|.++....
T Consensus 256 g-------------~~~~~~~~~~~l~~~G~iv~vG~ 279 (360)
T PLN02586 256 S-------------AVHALGPLLGLLKVNGKLITLGL 279 (360)
T ss_pred C-------------CHHHHHHHHHHhcCCcEEEEeCC
Confidence 1 12256677889999999887653
|
|
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=80.14 E-value=18 Score=30.53 Aligned_cols=97 Identities=18% Similarity=0.241 Sum_probs=57.1
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC---CCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM---SFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~---~~~~~~~~D~v~~ 121 (252)
+.++.+||..|+| .|..+..+++. |...+++++.+++..+.+++.-. -.++..+-.+. .......+|+++.
T Consensus 157 ~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~vd~v~~ 232 (334)
T cd08234 157 IKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA----TETVDPSREDPEAQKEDNPYGFDVVIE 232 (334)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC----eEEecCCCCCHHHHHHhcCCCCcEEEE
Confidence 4567789998865 25555555555 44348999999888777754321 01221111110 0013346899985
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
... ....+..+.+.|+++|.++....
T Consensus 233 ~~~-------------~~~~~~~~~~~l~~~G~~v~~g~ 258 (334)
T cd08234 233 ATG-------------VPKTLEQAIEYARRGGTVLVFGV 258 (334)
T ss_pred CCC-------------ChHHHHHHHHHHhcCCEEEEEec
Confidence 311 12456777888999999887653
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=80.06 E-value=18 Score=30.42 Aligned_cols=95 Identities=9% Similarity=0.014 Sum_probs=58.5
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----CCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~~D~v~ 120 (252)
+.++.+||-.|+ |.|..+..+++....++++++.+++-.+.+++.-. -.++...-.++. ......+|+|+
T Consensus 141 ~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~Ga----~~vi~~~~~~~~~~v~~~~~~gvd~vl 216 (329)
T cd08294 141 PKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELGF----DAVFNYKTVSLEEALKEAAPDGIDCYF 216 (329)
T ss_pred CCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC----CEEEeCCCccHHHHHHHHCCCCcEEEE
Confidence 567778888884 45777777777633379999999888777766311 122221111110 01224589888
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.. . . ...+....+.|+++|.++...
T Consensus 217 d~-----~-------g--~~~~~~~~~~l~~~G~iv~~g 241 (329)
T cd08294 217 DN-----V-------G--GEFSSTVLSHMNDFGRVAVCG 241 (329)
T ss_pred EC-----C-------C--HHHHHHHHHhhccCCEEEEEc
Confidence 42 1 1 135677888999999987653
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 252 | ||||
| 2pxx_A | 215 | Human Putative Methyltransferase Mgc2408 Length = 2 | 5e-28 | ||
| 3l8d_A | 242 | Crystal Structure Of Methyltransferase From Bacillu | 6e-09 | ||
| 3sm3_A | 235 | Crystal Structure Of Sam-Dependent Methyltransferas | 9e-09 | ||
| 1ve3_A | 227 | Crystal Structure Of Ph0226 Protein From Pyrococcus | 5e-07 | ||
| 1wzn_A | 252 | Crystal Structure Of The Sam-Dependent Methyltransf | 9e-04 |
| >pdb|2PXX|A Chain A, Human Putative Methyltransferase Mgc2408 Length = 215 | Back alignment and structure |
|
| >pdb|3L8D|A Chain A, Crystal Structure Of Methyltransferase From Bacillus Thuringiensis Length = 242 | Back alignment and structure |
|
| >pdb|3SM3|A Chain A, Crystal Structure Of Sam-Dependent Methyltransferases Q8puk2_metma From Methanosarcina Mazei. Northeast Structural Genomics Consortium Target Mar262 Length = 235 | Back alignment and structure |
|
| >pdb|1VE3|A Chain A, Crystal Structure Of Ph0226 Protein From Pyrococcus Horikoshii Ot3 Length = 227 | Back alignment and structure |
|
| >pdb|1WZN|A Chain A, Crystal Structure Of The Sam-Dependent Methyltransferase From Pyrococcus Horikoshii Ot3 Length = 252 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 2e-59
Identities = 61/183 (33%), Positives = 98/183 (53%), Gaps = 11/183 (6%)
Query: 13 YGDALYWNARYVQEGGS--FDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD 70
Y + YW+ RY S +DW+ +S+ R + + R+L++GCGN+ +S ++
Sbjct: 4 YREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLG 63
Query: 71 GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 130
G+ ++ ++D SSV + M+ Y +PQL++ MDVR + F SFD V++KGTLD+L+
Sbjct: 64 GFPNVTSVDYSSVVVAAMQACYAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLDALLA 122
Query: 131 GTNAPISAS--------QMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELY 182
G P + S Q+L EVSR+L PGG ++ +T P R H Y W +
Sbjct: 123 GERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTSAAPHFRTRHYAQAYYGWSLRHA 182
Query: 183 IIA 185
Sbjct: 183 TYG 185
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.70A {Bacillus thuringiensis} Length = 242 | Back alignment and structure |
|---|
Score = 84.2 bits (208), Expect = 1e-19
Identities = 39/172 (22%), Positives = 74/172 (43%), Gaps = 15/172 (8%)
Query: 9 NTYNYGD--ALYWNAR---YVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALM 63
+N+ + W++ + Q S + PF +Y+ + VL VGCG+
Sbjct: 8 TKFNWHESAEKKWDSSAEFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYG 67
Query: 64 SEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123
+ + + GY+ V +DIS V I K + E P L +++ D+ + FE+E F+A++
Sbjct: 68 TYKLSRTGYK-AVGVDISEVMIQKGKERGEG-PDLSFIKGDLSSLP-FENEQFEAIM--- 121
Query: 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVY 175
++ + L E+ R+LK G + G + ++Y
Sbjct: 122 ---AINSLEWTE-EPLRALNEIKRVLKSDGYACIAILGPTAKPRENSYPRLY 169
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 195 | Back alignment and structure |
|---|
Score = 79.4 bits (196), Expect = 2e-18
Identities = 30/162 (18%), Positives = 60/162 (37%), Gaps = 21/162 (12%)
Query: 19 WNARYVQEGGSFDWY-QRYSAL----------RPFVRKYIPTSSRVLMVGCGNALMSEDM 67
W + Y QR+ L + P +++L GCG + +
Sbjct: 5 WKELTDNNPAHSENYAQRWRNLAAAGNDIYGEARLIDAMAPRGAKILDAGCGQGRIGGYL 64
Query: 68 VKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127
K G+ D++ D+ + ID K + P+ +++ D+ + FD ++ + +
Sbjct: 65 SKQGH-DVLGTDLDPILIDYAKQDF---PEARWVVGDLSVDQ-ISETDFDLIV---SAGN 116
Query: 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIH 169
+M G A L + R L G +I +G + +
Sbjct: 117 VM-GFLAEDGREPALANIHRALGADGR-AVIGFGAGRGWVFG 156
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 227 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 3e-18
Identities = 36/134 (26%), Positives = 63/134 (47%), Gaps = 10/134 (7%)
Query: 29 SFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM 88
S ++ R L P + KY+ +VL + CG S + G+E +V +DIS I
Sbjct: 18 SQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFE-VVGVDISEDMIRKA 76
Query: 89 KMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPIS-ASQMLGEVS 146
+ + ++++ D R +S FED++FD VI + + +Q+ EV
Sbjct: 77 REYAKSRESNVEFIVGDARKLS-FEDKTFDYVI------FIDSIVHFEPLELNQVFKEVR 129
Query: 147 RLLKPGGIYMLITY 160
R+LKP G +++
Sbjct: 130 RVLKPSGKFIMYFT 143
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} Length = 209 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 2e-17
Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 13/150 (8%)
Query: 40 RPFVRKY------IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 93
+P + ++ VL G G L + + I+IS + + +
Sbjct: 8 QPQLYRFLKYCNESNLDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSR 67
Query: 94 EI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG 152
E +L + D+R + F+DES V GT+ + + E+ R+LKPG
Sbjct: 68 ENNFKLNISKGDIRKLP-FKDESMSFVYSYGTI-----FHMRKNDVKEAIDEIKRVLKPG 121
Query: 153 GIYMLITYGDPKARMIHLKWKVYNWKIELY 182
G+ + R + ++L
Sbjct: 122 GLACINFLTTKDERYNKGEKIGEGEFLQLE 151
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Length = 203 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 6e-16
Identities = 23/174 (13%), Positives = 58/174 (33%), Gaps = 16/174 (9%)
Query: 21 ARYVQEGGSFDWYQRYSALRPFVRKYIPTSS-RVLMVGCGNALMSEDMVKDGYEDIVNID 79
G+ + R + + +L VG G + + G+ I ++
Sbjct: 14 FDAEALLGTVISAEDP--DRVLIEPWATGVDGVILDVGSGTGRWTGHLASLGH-QIEGLE 70
Query: 80 ISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISAS 139
++ +++ + + P + + + D+S + + ++ SL+ +
Sbjct: 71 PATRLVELARQTH---PSVTFHHGTITDLSD-SPKRWAGLL---AWYSLIHMGPGELPD- 122
Query: 140 QMLGEVSRLLKPGGIYMLIT-YGDPKARMIHLKWKVYNWKIELY--IIARPGFE 190
L + ++ GG ++ G M H Y W + + GF+
Sbjct: 123 -ALVALRMAVEDGGGLLMSFFSGPSLEPMYHPVATAYRWPLPELAQALETAGFQ 175
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Length = 235 | Back alignment and structure |
|---|
Score = 72.5 bits (178), Expect = 2e-15
Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 19/169 (11%)
Query: 18 YWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVN 77
YW E S L P + Y+ +L +GCG+ +S ++ GY +
Sbjct: 5 YW------EKVSGKNIPSSLDLYPIIHNYLQEDDEILDIGCGSGKISLELASKGYS-VTG 57
Query: 78 IDISSVAIDMMKMKYEE-------IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 130
IDI+S AI + + + ++ + +SF D SFD + L
Sbjct: 58 IDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-HDSSFDFAV---MQAFLTS 113
Query: 131 GTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKI 179
+ P S+++ EV R+LKPG L+ +G ++ K ++++ I
Sbjct: 114 VPD-PKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYRKRYLHDFPI 161
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Length = 235 | Back alignment and structure |
|---|
Score = 70.4 bits (172), Expect = 8e-15
Identities = 30/153 (19%), Positives = 51/153 (33%), Gaps = 11/153 (7%)
Query: 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYED 74
+ W + +E +D + + V R L+ GCG M
Sbjct: 32 EEGGWEKCWEEEITPWDQGRATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPER-F 90
Query: 75 IVNIDISSVAIDMMKMKYEEIPQ---LKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCG 131
+V +DIS A+ Y P+ +++ DV + E FD + D ++
Sbjct: 91 VVGLDISESALAKANETYGSSPKAEYFSFVKEDVFT--WRPTELFDLIFDYVFFCAI--- 145
Query: 132 TNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164
P + LLKP G + + Y
Sbjct: 146 --EPEMRPAWAKSMYELLKPDGELITLMYPITD 176
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} Length = 245 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 1e-14
Identities = 31/217 (14%), Positives = 64/217 (29%), Gaps = 17/217 (7%)
Query: 18 YWNARYVQEGGSFDW----YQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYE 73
YWN V W + P ++ CGN ++ + +
Sbjct: 22 YWNKTLVNSTPVL-WDANVERAVVVDLPRFELLFNPELPLIDFACGNGTQTKFLSQFFPR 80
Query: 74 DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDA-VIDKGTLDSLM 129
++ +D+S A+++ + + Y +D E DA + + +
Sbjct: 81 -VIGLDVSKSALEIAAKENTA-ANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIP 138
Query: 130 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGF 189
+ + LL G LI G + + Y ++
Sbjct: 139 VEKRELL-----GQSLRILLGKQGAMYLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHG 193
Query: 190 EKPGGCSSSMKSYLEP-VPITDDGQLPAEFVLEDPDS 225
+PG ++ P I G+ + + + PD
Sbjct: 194 IRPGIFTAEDIELYFPDFEILSQGEGLFQSIHKLPDG 230
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Length = 266 | Back alignment and structure |
|---|
Score = 66.0 bits (161), Expect = 5e-13
Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 17/169 (10%)
Query: 11 YNYGDALY---WNARYVQEGGSFDWYQRYSALRPFVRK-YIPTSSRVLMVGCGNALMSED 66
+ G +Y + Y+ GG A + + + +S+VL +G G
Sbjct: 20 TDEGVKVYEFIFGENYISSGG-------LEATKKILSDIELNENSKVLDIGSGLGGGCMY 72
Query: 67 MVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126
+ + IDI S ++M + ++ + D+ F + +FD + + +
Sbjct: 73 INEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKEF-PENNFDLIYSRDAI- 130
Query: 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVY 175
+ + +++ + + LKP G ++ Y + ++K Y
Sbjct: 131 ---LALSLE-NKNKLFQKCYKWLKPTGTLLITDYCATEKENWDDEFKEY 175
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} Length = 226 | Back alignment and structure |
|---|
Score = 64.7 bits (157), Expect = 8e-13
Identities = 19/144 (13%), Positives = 40/144 (27%), Gaps = 26/144 (18%)
Query: 19 WNARYVQEGGSFD--WYQRYS------ALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD 70
R +E G + W + S ++ + + +RVL GCG+ +
Sbjct: 10 SYDRLARELGGYRHPWARVLSGPDPELTFDLWLSRLLTPQTRVLEAGCGHGPDAARFGPQ 69
Query: 71 GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSLM 129
D S + + + P + + + + F ++
Sbjct: 70 AAR-WAAYDFSPELLKLARANA---PHADVYEWNGKGELPAGLGAPFGLIVS-------- 117
Query: 130 CGTNAPISASQMLGEVSRLLKPGG 153
P S + + L P
Sbjct: 118 --RRGPTSV---ILRLPELAAPDA 136
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* Length = 216 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 9e-13
Identities = 22/153 (14%), Positives = 45/153 (29%), Gaps = 30/153 (19%)
Query: 19 WNARYVQEGGSFDWYQRYSALRPF---------VRKYIPTS--------SRVLMVGCGNA 61
+ Y + + P+ R S L +GC
Sbjct: 10 VDNTY------QSLERELANDDPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAG 63
Query: 62 LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVID 121
+E + + + ID+ AI + + + + D+ F E FD ++
Sbjct: 64 AFTEKLAPHC-KRLTVIDVMPRAIGRACQRTKRWSHISWAATDILQ--FSTAELFDLIV- 119
Query: 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGI 154
+ L + + + ++L PGG
Sbjct: 120 --VAEVLYYLED-MTQMRTAIDNMVKMLAPGGH 149
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 63.7 bits (155), Expect = 3e-12
Identities = 29/149 (19%), Positives = 62/149 (41%), Gaps = 14/149 (9%)
Query: 29 SFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM 88
+ Y R + F+ +Y+ RVL +G G S + + G+E +V +D S +M+
Sbjct: 36 KWKLYHRL--IGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFE-VVLVDPSK---EML 89
Query: 89 KMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRL 148
++ E+ + ++ D+ F +F+AV+ L ++ A E+ R+
Sbjct: 90 EVAREKGVK-NVVEAKAEDLP-FPSGAFEAVL---ALGDVLSYVENKDKA---FSEIRRV 141
Query: 149 LKPGGIYMLITYGDPKARMIHLKWKVYNW 177
L P G+ + ++ ++
Sbjct: 142 LVPDGLLIATVDNFYTFLQQMIEKDAWDQ 170
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* Length = 199 | Back alignment and structure |
|---|
Score = 62.5 bits (152), Expect = 4e-12
Identities = 29/152 (19%), Positives = 66/152 (43%), Gaps = 14/152 (9%)
Query: 14 GDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYE 73
G + + Y + ++ + +S + V+ + + L +GCGN S + +GY
Sbjct: 1 GAMVIRDENYFTDK--YELTRTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGY- 55
Query: 74 DIVNIDISSVAIDMMKM--KYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCG 131
D+ D ++++I ++ E + L +D+ +++F D +D ++ L L
Sbjct: 56 DVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF--DRQYDFILSTVVLMFL--- 110
Query: 132 TNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163
+ ++ + R KPGG +++ D
Sbjct: 111 --EAKTIPGLIANMQRCTKPGGYNLIVAAMDT 140
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* Length = 298 | Back alignment and structure |
|---|
Score = 62.8 bits (152), Expect = 8e-12
Identities = 31/185 (16%), Positives = 66/185 (35%), Gaps = 18/185 (9%)
Query: 18 YWNARYVQEGGSFDWYQRYSALRPF--------VRKYIPTSSRVLMVGCGNALMSEDMVK 69
++N+ + G + +R +R Y VL +GCG +
Sbjct: 26 HYNSIR-ERGRESRQRSKTINIRNANNFIKACLIRLYTKRGDSVLDLGCGKGGDLLKYER 84
Query: 70 DGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126
G + +DI+ V+I+ +++ + ++ + D + FD + +
Sbjct: 85 AGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDVIS---SQF 141
Query: 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIAR 186
S + S ++R L+PGG +++ P +I ++K + Y I
Sbjct: 142 SFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV---PSRDVILERYKQGRMSNDFYKIEL 198
Query: 187 PGFEK 191
E
Sbjct: 199 EKMED 203
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} Length = 243 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 9e-12
Identities = 30/150 (20%), Positives = 58/150 (38%), Gaps = 12/150 (8%)
Query: 12 NYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVK 69
N D + A Y Q G S + A P +R +P R++ +GCG +
Sbjct: 5 NIYDQPDFFAGYSQLGRSIEGLDGA-AEWPALRAMLPEVGGLRIVDLGCGFGWFCRWAHE 63
Query: 70 DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129
G ++ +D+S + + + + Y + D+ + +SFD + +L
Sbjct: 64 HGASYVLGLDLSEKMLARARAAGPD-TGITYERADLDKLH-LPQDSFDLAY---SSLALH 118
Query: 130 CGTNAPISASQMLGEVSRLLKPGGIYMLIT 159
+ ++ V + L PGG ++ T
Sbjct: 119 YVEDVA----RLFRTVHQALSPGGHFVFST 144
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Length = 234 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 9e-12
Identities = 23/144 (15%), Positives = 56/144 (38%), Gaps = 8/144 (5%)
Query: 33 YQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYE-DIVNIDISSVAIDMMKMK 91
+ + + + + +L +G G L+S +++ E +D+S +++ K +
Sbjct: 28 FDDFYGVSVSIASVDTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNR 87
Query: 92 YEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP 151
+ ++KY++ D F +E +D V+ ++ L ++ +LK
Sbjct: 88 FRGNLKVKYIEADYSKYDF--EEKYDMVVSALSIHHL-----EDEDKKELYKRSYSILKE 140
Query: 152 GGIYMLITYGDPKARMIHLKWKVY 175
GI++ + I K
Sbjct: 141 SGIFINADLVHGETAFIENLNKTI 164
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} Length = 239 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 1e-11
Identities = 29/127 (22%), Positives = 49/127 (38%), Gaps = 9/127 (7%)
Query: 31 DWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKM 90
D+ S + VR P +S +L V CG E K+ D +++S DM+
Sbjct: 22 DYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSE---DMLTH 77
Query: 91 KYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLK 150
+ +P Q D+RD F AV+ S+ + + L+
Sbjct: 78 ARKRLPDATLHQGDMRDFRL--GRKFSAVVS--MFSSVGYLKTTE-ELGAAVASFAEHLE 132
Query: 151 PGGIYML 157
PGG+ ++
Sbjct: 133 PGGVVVV 139
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* Length = 299 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 2e-11
Identities = 26/153 (16%), Positives = 56/153 (36%), Gaps = 13/153 (8%)
Query: 30 FDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMK 89
S R F + P S VL + G ++ + G+ ++ +++S+ + +
Sbjct: 63 IQDADGTSEAREFATRTGPVSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFR 121
Query: 90 MKYEEIP-----QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGE 144
+ E P + +Q D+ + D+ F V+ + S+ A +
Sbjct: 122 KRLAEAPADVRDRCTLVQGDMSAFAL--DKRFGTVVI--SSGSINELDEA--DRRGLYAS 175
Query: 145 VSRLLKPGGIYMLITYGDPKARMIHLKWKVYNW 177
V L+PGG + L++ +A +
Sbjct: 176 VREHLEPGGKF-LLSLAMSEAAESEPLERKQEL 207
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A Length = 202 | Back alignment and structure |
|---|
Score = 60.7 bits (147), Expect = 2e-11
Identities = 25/148 (16%), Positives = 59/148 (39%), Gaps = 23/148 (15%)
Query: 19 WNARYVQEGGSF-----DWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYE 73
W+ R+ Q + D+ + P ++L + G + + GYE
Sbjct: 2 WDERFSQSEYVYGTEPNDFLVSVANQIP--------QGKILCLAEGEGRNACFLASLGYE 53
Query: 74 DIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGT 132
+ +D SSV + K +E ++ +Q ++ D ++++ ++
Sbjct: 54 -VTAVDQSSVGLAKAKQLAQEKGVKITTVQSNLADFDI-VADAWEGIVS-----IFCHLP 106
Query: 133 NAPISASQMLGEVSRLLKPGGIYMLITY 160
++ + +V + LKPGG+++L +
Sbjct: 107 SSLRQQ--LYPKVYQGLKPGGVFILEGF 132
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Length = 253 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 2e-11
Identities = 29/149 (19%), Positives = 60/149 (40%), Gaps = 13/149 (8%)
Query: 13 YGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKD 70
Y D ++ +Y Q S + + ++K +P VL +GCG +
Sbjct: 8 YDDKHFFE-QYSQMPRSKEGLKAA-GEWHELKKMLPDFNQKTVLDLGCGFGWHCIYAAEH 65
Query: 71 GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC 130
G + ++ ID+S + K K P + Y Q + D++ E ++++ V+ + +L
Sbjct: 66 GAKKVLGIDLSERMLTEAKRKTTS-PVVCYEQKAIEDIA-IEPDAYNVVL---SSLALHY 120
Query: 131 GTNAPISASQMLGEVSRLLKPGGIYMLIT 159
+ + +V LK G ++
Sbjct: 121 IASFD----DICKKVYINLKSSGSFIFSV 145
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276 | Back alignment and structure |
|---|
Score = 61.5 bits (149), Expect = 2e-11
Identities = 37/140 (26%), Positives = 64/140 (45%), Gaps = 12/140 (8%)
Query: 47 IPTSSRVLMVGCGNALMSEDMVKDGYE-DIVNIDISSVAIDMMKMKYEE--IPQLKYLQM 103
P ++VL GCG + + K+ + +I +IDIS +++ + E+ I +K+LQ
Sbjct: 35 YPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQA 94
Query: 104 DVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163
++ + F ED SFD + L + P A L + ++LKPGG + + GD
Sbjct: 95 NIFSLPF-EDSSFDHIF---VCFVLEHLQS-PEEA---LKSLKKVLKPGGT-ITVIEGDH 145
Query: 164 KARMIHLKWKVYNWKIELYI 183
+ H + K I
Sbjct: 146 GSCYFHPEGKKAIEAWNCLI 165
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 Length = 252 | Back alignment and structure |
|---|
Score = 61.0 bits (148), Expect = 3e-11
Identities = 31/133 (23%), Positives = 63/133 (47%), Gaps = 13/133 (9%)
Query: 31 DWYQRYSALRPFVRKYI-----PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAI 85
+R A FV + RVL + CG + + ++ + GY ++V +D+ +
Sbjct: 18 RRIERVKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEML 76
Query: 86 DMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGE 144
+ + K +E ++++LQ DV +++F FDAV ++M ++ +
Sbjct: 77 RVARRKAKERNLKIEFLQGDVLEIAF--KNEFDAVTM--FFSTIMYFDEE--DLRKLFSK 130
Query: 145 VSRLLKPGGIYML 157
V+ LKPGG+++
Sbjct: 131 VAEALKPGGVFIT 143
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Length = 254 | Back alignment and structure |
|---|
Score = 60.5 bits (146), Expect = 3e-11
Identities = 26/178 (14%), Positives = 57/178 (32%), Gaps = 18/178 (10%)
Query: 1 MYRDVSSCNTYN-----YGDAL-YWNARYVQEGGSFDWYQRYSAL----RPFVRKYIP-- 48
M++ + + Y+ YG AL YW G + +P
Sbjct: 33 MWKAELTGDLYDPEKGWYGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGH 92
Query: 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM 108
+SR L G G ++++++ Y ++ ++ K + +P K++ +
Sbjct: 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA 152
Query: 109 SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 166
+ ++D ++ + T L + + L P G R
Sbjct: 153 T-LPPNTYDLIVIQWTAIYL-----TDADFVKFFKHCQQALTPNGYIFFKENCSTGDR 204
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Length = 267 | Back alignment and structure |
|---|
Score = 60.3 bits (146), Expect = 5e-11
Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 22/141 (15%)
Query: 30 FDWYQRYSALRPFVRKY----------IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNID 79
D++ P + + S + +GCG + + + +D
Sbjct: 17 CDFFSNMERQGPGSPEVTLKALSFIDNLTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLD 76
Query: 80 ISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPI 136
S ID+ + ++ + + D+ F +E D + +G + + I
Sbjct: 77 FLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP-FRNEELDLIWSEGAIYN--------I 127
Query: 137 SASQMLGEVSRLLKPGGIYML 157
+ L E + LK GG +
Sbjct: 128 GFERGLNEWRKYLKKGGYLAV 148
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* Length = 263 | Back alignment and structure |
|---|
Score = 59.9 bits (145), Expect = 6e-11
Identities = 27/149 (18%), Positives = 57/149 (38%), Gaps = 12/149 (8%)
Query: 10 TYNYGD-ALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMV 68
G+ A ++ + +G D+++ + L VR++ P ++ +L V CG + +
Sbjct: 12 ADYSGEIAELYDLVH--QGKGKDYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLA 69
Query: 69 KDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128
+ +++S+ DM+ + P D+RD S F AV S+
Sbjct: 70 DSFG-TVEGLELSA---DMLAIARRRNPDAVLHHGDMRDFSL--GRRFSAVTC--MFSSI 121
Query: 129 MCGTNAPISASQMLGEVSRLLKPGGIYML 157
L + + P G+ ++
Sbjct: 122 GHLAG-QAELDAALERFAAHVLPDGVVVV 149
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} Length = 230 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 7e-11
Identities = 28/148 (18%), Positives = 52/148 (35%), Gaps = 38/148 (25%)
Query: 18 YWNARYVQEGGSFDWYQRYSALRPFVRKYIP-TSSRVLMVGCGNALMSEDMVKDGYEDIV 76
N+ Y Y+A+ P + K+I VL +GC + + + ++G +
Sbjct: 5 PKNSLY-----EEKSGHYYNAVNPNLLKHIKKEWKEVLDIGCSSGALGAAIKENGTR-VS 58
Query: 77 NIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPI 136
I+ A + K K + + ++ DM +E+E FD VI
Sbjct: 59 GIEAFPEAAEQAKEKLDHV---VLGDIETMDMP-YEEEQFDCVI---------------- 98
Query: 137 SASQML----------GEVSRLLKPGGI 154
+L +V +K G+
Sbjct: 99 -FGDVLEHLFDPWAVIEKVKPYIKQNGV 125
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305 | Back alignment and structure |
|---|
Score = 60.1 bits (145), Expect = 8e-11
Identities = 29/164 (17%), Positives = 52/164 (31%), Gaps = 17/164 (10%)
Query: 34 QRYSALRPFVRKYIPTSSRVLMVGCG---NALMSEDMVKDGYEDIVNIDISSVAIDMMKM 90
+R+ R +++++ V V CG L + G + +V ID A+D
Sbjct: 103 ERHGHFRRALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQ-LVGIDYDPEALDGATR 161
Query: 91 KYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISAS--QMLGEV 145
Q+ + D + E +D + S P A ++
Sbjct: 162 LAAGHALAGQITLHRQDAWKLDT--REGYDLLT------SNGLNIYEPDDARVTELYRRF 213
Query: 146 SRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGF 189
+ LKPGG + P A W + + + F
Sbjct: 214 WQALKPGGALVTSFLTPPPALSPDSPWDMQAIDPHDLQLQQLVF 257
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Length = 273 | Back alignment and structure |
|---|
Score = 59.4 bits (144), Expect = 1e-10
Identities = 29/117 (24%), Positives = 50/117 (42%), Gaps = 11/117 (9%)
Query: 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQM 103
+ + RVL VGCG + + + I IS ++ + ++ +
Sbjct: 59 VRSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYA 118
Query: 104 DVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160
D D+ FED SFDAV +L + P + L E++R+L+PGG + +
Sbjct: 119 DAMDLP-FEDASFDAVW------ALESLHHMP-DRGRALREMARVLRPGGTVAIADF 167
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 Length = 246 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 1e-10
Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 17/145 (11%)
Query: 15 DALY-WNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYE 73
D L + Y + D+ + L + CG ++E++
Sbjct: 11 DKLIRADVDYKKW---SDFIIEK------CVENNLVFDDYLDLACGTGNLTENLCPKFK- 60
Query: 74 DIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGT 132
+ +D+S + + K+ + + D+ +++ + FD + LDS
Sbjct: 61 NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLNI--NRKFDLIT--CCLDSTNYII 116
Query: 133 NAPISASQMLGEVSRLLKPGGIYML 157
+ + VS LK GG+++
Sbjct: 117 D-SDDLKKYFKAVSNHLKEGGVFIF 140
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* Length = 218 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 2e-10
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 10/122 (8%)
Query: 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD 107
VL + G + + + +D S+ I + +++ Q D+ D
Sbjct: 45 NIRGDVLELASGTGYWTRHLSGLADR-VTALDGSAEMIAEAGRH--GLDNVEFRQQDLFD 101
Query: 108 MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARM 167
+ D +DAV L + A V + PGG+ + D + R+
Sbjct: 102 WTP--DRQWDAVF---FAHWLAHVPDDRFEA--FWESVRSAVAPGGVVEFVDVTDHERRL 154
Query: 168 IH 169
Sbjct: 155 EQ 156
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} Length = 227 | Back alignment and structure |
|---|
Score = 58.3 bits (141), Expect = 2e-10
Identities = 25/142 (17%), Positives = 45/142 (31%), Gaps = 17/142 (11%)
Query: 18 YWNA---RYVQEGGSFDWYQRYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKDGY 72
W+ ++ R + I RVL +GCG + + G
Sbjct: 16 SWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGRQPERVLDLGCGEGWLLRALADRGI 75
Query: 73 EDIVNIDISSVAIDMMKMKY-EEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCG 131
E V +D +D + E+ Y Q+ + +D + +L+
Sbjct: 76 E-AVGVDGDRTLVDAARAAGAGEVHLASYAQLAEAK--VPVGKDYDLIC---ANFALL-- 127
Query: 132 TNAPISASQMLGEVSRLLKPGG 153
++L + LL PGG
Sbjct: 128 ---HQDIIELLSAMRTLLVPGG 146
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Length = 211 | Back alignment and structure |
|---|
Score = 58.0 bits (140), Expect = 2e-10
Identities = 26/140 (18%), Positives = 49/140 (35%), Gaps = 16/140 (11%)
Query: 18 YWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVN 77
++ + Q SA +P +++L +GCG +E M+ G+ D+
Sbjct: 16 FYRGNATA----YAERQPRSATLTKFLGELPAGAKILELGCGAGYQAEAMLAAGF-DVDA 70
Query: 78 IDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPIS 137
D S + M + +++DAV L +
Sbjct: 71 TDGSPELAAEASRR----LGRPVRTMLFHQLDA--IDAYDAVWAHACLLHVP-----RDE 119
Query: 138 ASQMLGEVSRLLKPGGIYML 157
+ +L + R LKPGG++
Sbjct: 120 LADVLKLIWRALKPGGLFYA 139
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Length = 219 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 2e-10
Identities = 21/115 (18%), Positives = 46/115 (40%), Gaps = 11/115 (9%)
Query: 42 FVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQL 98
+ ++ T+ + +G G +S + K I +D S ++ + ++
Sbjct: 36 IINRFGITAGTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRI 95
Query: 99 KYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGG 153
+ +Q DV ++ ED D ++ + S+ + E+ R+LK GG
Sbjct: 96 QIVQGDVHNIP-IEDNYADLIV---SRGSVFFWEDVA----TAFREIYRILKSGG 142
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* Length = 293 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 3e-10
Identities = 28/160 (17%), Positives = 64/160 (40%), Gaps = 21/160 (13%)
Query: 11 YNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPT--SSRVLMVGCGNALMSEDMV 68
Y G+A Y+ D R + + ++ + RVL V CG + S +V
Sbjct: 22 YADGEAARVWQLYIG-----DTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLV 76
Query: 69 KDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFE-------DESFDAVI 120
++G+ + ++D S + + + + + + + ++ + FDAVI
Sbjct: 77 EEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI 135
Query: 121 DKGTLDSLMCGTNAPISAS---QMLGEVSRLLKPGGIYML 157
+S ++ S L ++ +++PGG+ ++
Sbjct: 136 C--LGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVI 173
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} Length = 243 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 4e-10
Identities = 31/147 (21%), Positives = 54/147 (36%), Gaps = 9/147 (6%)
Query: 35 RYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94
Y +V + + R+ +GCG + + D Y ++ +D+S +++ + K E
Sbjct: 19 PYPEWVAWVLEQVEPGKRIADIGCGTGTATLLL-ADHY-EVTGVDLSEEMLEIAQEKAME 76
Query: 95 I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGG 153
+ + D+R++ E DA+ DSL Q +RLL GG
Sbjct: 77 TNRHVDFWVQDMRELEL--PEPVDAITI--LCDSLNYLQTEA-DVKQTFDSAARLLTDGG 131
Query: 154 IYMLITYGDPKARMIHLKWKVYNWKIE 180
+L P K Y E
Sbjct: 132 K-LLFDVHSPYKMETLFNGKTYATHAE 157
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Length = 220 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 4e-10
Identities = 21/147 (14%), Positives = 50/147 (34%), Gaps = 13/147 (8%)
Query: 16 ALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSS-RVLMVGCGNALMSEDMVKDGYED 74
A +++ E + + ++ + + S VL G G ++ ++ G
Sbjct: 13 AHTYDSFVQGEDIQYK--EVFAHYEDILEDVVNKSFGNVLEFGVGTGNLTNKLLLAGRT- 69
Query: 75 IVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNA 134
+ I+ S + K K + + + D S D ++ + + T+
Sbjct: 70 VYGIEPSREMRMIAKEKLPK--EFSITEGDFLSFEV--PTSIDTIV---STYAFHHLTDD 122
Query: 135 PISASQMLGEVSRLLKPGGIYMLITYG 161
+ + + S+LL GG +
Sbjct: 123 EKNV--AIAKYSQLLNKGGKIVFADTI 147
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Length = 257 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 5e-10
Identities = 19/114 (16%), Positives = 46/114 (40%), Gaps = 12/114 (10%)
Query: 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQM 103
+ +++ +GCG + + I ID+ I++ + ++K +
Sbjct: 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITG 103
Query: 104 DVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157
+ ++ F++E D + +G + + I + + E S+ LK GG +
Sbjct: 104 SMDNLP-FQNEELDLIWSEGAIYN--------IGFERGMNEWSKYLKKGGFIAV 148
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} Length = 261 | Back alignment and structure |
|---|
Score = 57.2 bits (138), Expect = 6e-10
Identities = 25/142 (17%), Positives = 52/142 (36%), Gaps = 22/142 (15%)
Query: 34 QRYSALRPFVRKY---------IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVA 84
++YS R + +P S + +G G S + G + ++ S V
Sbjct: 10 KQYSQTRVPDIRIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGLF-VYAVEPSIVM 68
Query: 85 IDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGE 144
+ PQ+++ +++ D+S D VI S++ + + E
Sbjct: 69 RQQAVVH----PQVEWFTGYAENLA-LPDKSVDGVI------SILAIHHFS-HLEKSFQE 116
Query: 145 VSRLLKPGGIYMLITYGDPKAR 166
+ R+++ G I +L R
Sbjct: 117 MQRIIRDGTIVLLTFDIRLAQR 138
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 Length = 269 | Back alignment and structure |
|---|
Score = 56.5 bits (136), Expect = 1e-09
Identities = 40/172 (23%), Positives = 68/172 (39%), Gaps = 26/172 (15%)
Query: 9 NTYNYGD--ALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSS-RVLMVGCGNALMSE 65
+ + GD + R + G + + A+ +R+ + + VL +GCG +
Sbjct: 44 RSRDPGDSAEMMQARRAFLDAGHYQPLRD--AIVAQLRERLDDKATAVLDIGCGEGYYTH 101
Query: 66 DMVKDGYE-DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124
E +D+S VAI +Y PQ+ + + F D S DA+I
Sbjct: 102 AFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLPF-SDTSMDAIIR--- 154
Query: 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYN 176
I A E++R++KPGG + T G ++ LK +YN
Sbjct: 155 -----------IYAPCKAEELARVVKPGGWVITATPGP--RHLMELKGLIYN 193
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284 | Back alignment and structure |
|---|
Score = 56.1 bits (135), Expect = 1e-09
Identities = 25/179 (13%), Positives = 57/179 (31%), Gaps = 27/179 (15%)
Query: 17 LYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSED---MVKDGYE 73
LY+N YV + ++ GCG + ++ +G +
Sbjct: 3 LYYNDDYVSF-----LVNTVWKITK--------PVHIVDYGCGYGYLGLVLMPLLPEGSK 49
Query: 74 DIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGT 132
ID + + + +P ++L+ D ++ ++ +D I L+
Sbjct: 50 -YTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIEL--NDKYDIAI---CHAFLL--- 100
Query: 133 NAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFEK 191
+ + ML ++ +K GG + +L + + + FE
Sbjct: 101 HMT-TPETMLQKMIHSVKKGGKIICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFES 158
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} Length = 211 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-09
Identities = 31/168 (18%), Positives = 62/168 (36%), Gaps = 22/168 (13%)
Query: 19 WNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNI 78
W + G++ + AL+ + P +L VG G + V +
Sbjct: 13 WYGTPL---GAYVIAEEERALKGLL----PPGESLLEVGAGTGYWLRRLPY---PQKVGV 62
Query: 79 DISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISA 138
+ S M+ + P+ +++ + F ESFD V+ TL
Sbjct: 63 EPSE---AMLAVGRRRAPEATWVRAWGEALPF-PGESFDVVLLFTTL------EFVE-DV 111
Query: 139 SQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIAR 186
++L E R+L+PGG +++ + + L ++ + + AR
Sbjct: 112 ERVLLEARRVLRPGG-ALVVGVLEALSPWAALYRRLGEKGVLPWAQAR 158
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Length = 297 | Back alignment and structure |
|---|
Score = 55.2 bits (133), Expect = 3e-09
Identities = 19/117 (16%), Positives = 47/117 (40%), Gaps = 11/117 (9%)
Query: 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQM 103
+ ++ L +G G + +V+ I ++I+ V + + +
Sbjct: 80 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYG 139
Query: 104 DVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160
++ ED S+D + + D+ + ++P ++ E +R+LKP G+ +
Sbjct: 140 SFLEIPC-EDNSYDFIW---SQDAFL---HSP-DKLKVFQECARVLKPRGVMAITDP 188
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 Length = 241 | Back alignment and structure |
|---|
Score = 54.7 bits (131), Expect = 3e-09
Identities = 31/195 (15%), Positives = 69/195 (35%), Gaps = 22/195 (11%)
Query: 12 NYGDAL-YWNARYVQEGGSFDWYQRYSAL-----RPFVRKYI------PTSSRVLMVGCG 59
Y A YW G Y S++ R F+++++ +S L G G
Sbjct: 30 FYSKAKTYWKQIPPTVDGMLGGYGHISSIDINSSRKFLQRFLREGPNKTGTSCALDCGAG 89
Query: 60 NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFD 117
+++ ++ + ++ +DI+ + K E Y ++D + E +S+D
Sbjct: 90 IGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYD 148
Query: 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNW 177
+ + + L ++ L L+P GI ++ + ++
Sbjct: 149 VIWIQWVIGHL-----TDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDDVDSSVCR 203
Query: 178 KIELY--IIARPGFE 190
+++ II G
Sbjct: 204 DLDVVRRIICSAGLS 218
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Length = 286 | Back alignment and structure |
|---|
Score = 54.6 bits (131), Expect = 5e-09
Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 12/151 (7%)
Query: 14 GDALYWNARYVQEGGSFDWYQRYSALRPFVRKY---IPTSSRVLMVGCGNALMSEDMVKD 70
D L + + + + + I + +VL +GCG S +
Sbjct: 82 SDDLECTLGFYCKKEDYFSKKYNTTAIHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLL 141
Query: 71 GYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129
GY D+ + D + +I + E+ + D+ + E++D ++ L
Sbjct: 142 GY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAANI--QENYDFIVSTVVFMFL- 197
Query: 130 CGTNAPISASQMLGEVSRLLKPGGIYMLITY 160
++ + GG +++
Sbjct: 198 ----NRERVPSIIKNMKEHTNVGGYNLIVAA 224
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A Length = 263 | Back alignment and structure |
|---|
Score = 54.2 bits (130), Expect = 6e-09
Identities = 27/151 (17%), Positives = 52/151 (34%), Gaps = 25/151 (16%)
Query: 29 SFD-WYQRYSALRPFVRKYI--------------PTSSRVLMVGCGNALMSEDMVKDGYE 73
+ Y LR + L +G G ++ ++ GY
Sbjct: 4 ALLRAAYAYDRLRAHPPEVAGQIATAMASAVHPKGEEPVFLELGVGTGRIALPLIARGYR 63
Query: 74 DIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGT 132
+ +D + +++ + K + +++ +Q D R + DES VI +
Sbjct: 64 -YIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIPL-PDESVHGVI------VVHLWH 115
Query: 133 NAPISASQMLGEVSRLLKPGGIYMLITYGDP 163
P ++L E R+LKPGG +
Sbjct: 116 LVP-DWPKVLAEAIRVLKPGGALLEGWDQAE 145
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Length = 279 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 6e-09
Identities = 29/165 (17%), Positives = 58/165 (35%), Gaps = 36/165 (21%)
Query: 18 YWNARYVQEGGSFDWYQRYSALRPFVRK----YIPTSS--RVLMVGCGNALMSEDMVKDG 71
+W+A YQ + + + +L +GCG ++E + + G
Sbjct: 29 FWDA---------TLYQDKHSFVWQYGEDLLQLLNPQPGEFILDLGCGTGQLTEKIAQSG 79
Query: 72 YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCG 131
E ++ D ++ M++ + P L + D R+ D+ DAV
Sbjct: 80 AE-VLGTDNAA---TMIEKARQNYPHLHFDVADARNFRV--DKPLDAVF----------- 122
Query: 132 TNAPI----SASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKW 172
+NA + + + + LK GG ++ G + I
Sbjct: 123 SNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEAL 167
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} Length = 299 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-08
Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 21/182 (11%)
Query: 28 GSFDWYQRYSALRP--------FVRKYIP-TSSRVLMVGCGNALMSEDMVKDG--YEDIV 76
F+ +RYS+ RP + +Y ++ VGCG + M ++ +E I+
Sbjct: 7 SDFNS-ERYSSSRPSYPSDFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQII 65
Query: 77 NIDIS----SVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGT 132
D+S A + + + + + D F +S +DK +D +
Sbjct: 66 GSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADS----VDKQKIDMITAVE 121
Query: 133 NAP-ISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFEK 191
A + L+ G + Y DP + P +E+
Sbjct: 122 CAHWFDFEKFQRSAYANLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQ 181
Query: 192 PG 193
PG
Sbjct: 182 PG 183
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Length = 217 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 1e-08
Identities = 22/154 (14%), Positives = 56/154 (36%), Gaps = 24/154 (15%)
Query: 32 WYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKM 90
QR + + +++ RV+ +GCG + + ++KD +E I +D+S ++++ +
Sbjct: 14 NQQRMNGVVAALKQSNAR--RVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQE 71
Query: 91 KYEEIPQ-------LKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLG 143
+ + + L+ +Q + +DA ++ L
Sbjct: 72 RLDRLRLPRNQWERLQLIQGALTYQD-KRFHGYDAATVIEVIEHL-----DLSRLGAFER 125
Query: 144 EVSRLLKPGGI--------YMLITYGDPKARMIH 169
+ +P + Y + P ++ H
Sbjct: 126 VLFEFAQPKIVIVTTPNIEYNVKFANLPAGKLRH 159
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* Length = 252 | Back alignment and structure |
|---|
Score = 51.4 bits (122), Expect = 6e-08
Identities = 27/171 (15%), Positives = 56/171 (32%), Gaps = 27/171 (15%)
Query: 18 YWNARYVQEGGSFDWYQRYSALRPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDGYEDI 75
W ++V SF Q + L+ + ++ + RV CG A+ + G+ +
Sbjct: 35 DWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TV 93
Query: 76 VNIDISSVAIDMM-------------------KMKYEEIPQLKYLQMDVRDMSFFEDESF 116
V ++IS + I K+ + + D+ F
Sbjct: 94 VGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLPRANIGKF 153
Query: 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARM 167
D + D+G L ++ P + + LL+ Y++ +
Sbjct: 154 DRIWDRGALVAIN-----PGDHDRYADIILSLLRKEFQYLVAVLSYDPTKH 199
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Length = 219 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 8e-08
Identities = 18/131 (13%), Positives = 45/131 (34%), Gaps = 16/131 (12%)
Query: 32 WYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMK- 89
QR + ++ +V+ +GCG + ++KD +E I +D+S ++ K
Sbjct: 14 NQQRLGTVVAVLKSVNAK--KVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKD 71
Query: 90 ------MKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLG 143
+ + ++ Q + +DA T+ ++ +
Sbjct: 72 RLKIDRLPEMQRKRISLFQSSLVYRD-KRFSGYDAA----TVIEVIEHLDENR-LQAFEK 125
Query: 144 EVSRLLKPGGI 154
+ +P +
Sbjct: 126 VLFEFTRPQTV 136
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} Length = 170 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 1e-07
Identities = 22/110 (20%), Positives = 48/110 (43%), Gaps = 15/110 (13%)
Query: 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF 110
++ GCGN + +++ + IDI+ +A+ +K K++ + + + D
Sbjct: 19 GVIVDYGCGNGFYCKYLLEFA-TKLYCIDINVIALKEVKEKFDSV-------ITLSDPKE 70
Query: 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160
D S D ++ +S + ++ EV R+LK G ++I +
Sbjct: 71 IPDNSVDFIL---FANSF-HDMDDK---QHVISEVKRILKDDGRVIIIDW 113
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 Length = 219 | Back alignment and structure |
|---|
Score = 50.2 bits (120), Expect = 1e-07
Identities = 27/158 (17%), Positives = 59/158 (37%), Gaps = 25/158 (15%)
Query: 29 SFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM 88
F + A++ + + R + +G G + + + ++ S ++
Sbjct: 32 RFAYLSELQAVKCLLPE-----GRGVEIGVGTGRFAVPLKI-----KIGVEPSERMAEIA 81
Query: 89 KMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRL 148
+ + + L+ ++ +DESFD + T+ C + P A L E R+
Sbjct: 82 RKR-----GVFVLKGTAENLPL-KDESFDFALMVTTI----CFVDDPERA---LKEAYRI 128
Query: 149 LKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIAR 186
LK GG ++ + + +++ K Y AR
Sbjct: 129 LKKGGYLIVGIV--DRESFLGREYEKNKEKSVFYKNAR 164
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 Length = 203 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 1e-07
Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 25/146 (17%)
Query: 41 PFVRKYIPT-----SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI 95
+++Y + +RVL+ CG + + GY +V ++S A++ + E
Sbjct: 9 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQ 67
Query: 96 PQL--------------KYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQM 141
P + + D ++ + A D+ + +L +
Sbjct: 68 PHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALP-----ADMRERY 122
Query: 142 LGEVSRLLKPGGIYMLITYGDPKARM 167
+ + L+ +LIT +A +
Sbjct: 123 VQHLEALMPQACSGLLITLEYDQALL 148
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* Length = 312 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-07
Identities = 29/164 (17%), Positives = 51/164 (31%), Gaps = 18/164 (10%)
Query: 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRD 107
++ GCG + + + +S+ D + E+ ++ ++ D
Sbjct: 119 DTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLD 178
Query: 108 MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARM 167
F + + A +S M + + E SR LK GG Y+ IT
Sbjct: 179 TPF-DKGAVTAS---WNNESTM-----YVDLHDLFSEHSRFLKVGGRYVTITGCWNPRYG 229
Query: 168 IHLKWKVYNWKIELYIIARPGFEKPGGCSSSMKSY-LEPVPITD 210
KW +I + +M L P I D
Sbjct: 230 QPSKWVS---QINAHFE--CNIHSRREYLRAMADNRLVPHTIVD 268
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Length = 240 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 3e-07
Identities = 26/156 (16%), Positives = 56/156 (35%), Gaps = 23/156 (14%)
Query: 30 FDWYQRYSALRPFVR-------KYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISS 82
F + +++ R V+ Y RVL +GCG E ++G + + +DI+
Sbjct: 15 FLFEEKFRGSRELVKARLRRYIPYFKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINE 73
Query: 83 VAIDMMKMKYEEIPQLKYLQMD-VRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQM 141
I + K+ + + D + + D+ D V+ ++ L P ++
Sbjct: 74 DMIKFCEGKFNVV------KSDAIEYLKSLPDKYLDGVMISHFVEHL-----DPERLFEL 122
Query: 142 LGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNW 177
L +K ++ + P ++ Y
Sbjct: 123 LSLCYSKMKYSSYIVIES---PNPTSLYSLINFYID 155
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Length = 950 | Back alignment and structure |
|---|
Score = 49.8 bits (118), Expect = 4e-07
Identities = 16/136 (11%), Positives = 42/136 (30%), Gaps = 20/136 (14%)
Query: 34 QRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMK-- 89
QR +R+ S ++ GCG+ + + ++ + I+ +DIS +
Sbjct: 708 QRVEYALKHIRESSA--STLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKM 765
Query: 90 ------MKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLG 143
+ + + + D ++ + A +
Sbjct: 766 LHVKLNKEACNVKSATLYDGSILEFD-SRLHDVDIGTCLEVIEHME-----EDQACEFGE 819
Query: 144 EVSRLLKPGGIYMLIT 159
+V L P ++++
Sbjct: 820 KVLSLFHPK--LLIVS 833
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 4e-07
Identities = 23/143 (16%), Positives = 48/143 (33%), Gaps = 12/143 (8%)
Query: 52 RVLMVGCGNALMSEDMVKDGYED--IVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRD 107
VL VG G + K E + ID+ ++ K + + ++ L+ +
Sbjct: 40 TVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENK 99
Query: 108 MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARM 167
+ D + D + + + + L E+ R+ KP +I + +
Sbjct: 100 IPL-PDNTVDFIF-------MAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEERDK 151
Query: 168 IHLKWKVYNWKIELYIIARPGFE 190
+VY+ I+ G
Sbjct: 152 GPPPEEVYSEWEVGLILEDAGIR 174
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A Length = 250 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 5e-07
Identities = 22/172 (12%), Positives = 46/172 (26%), Gaps = 37/172 (21%)
Query: 35 RYSALRPFVRKYIP---TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMK 91
+ + PF+ + +L +G + + + DI ++ S AI + +
Sbjct: 25 DFDVMHPFMVRAFTPFFRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGR 83
Query: 92 YEEIPQLKYLQMDVRDMSFFEDESFDAVI----------DKGTLDSLMCGTNAPISASQM 141
++ + Y+ D +D ++ L +
Sbjct: 84 LKDG--ITYIHSRFEDAQL--PRRYDNIVLTHVLEHIDDPVALLKRIN------------ 127
Query: 142 LGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFEKPG 193
L GG L+ P A + + V I G
Sbjct: 128 ----DDWLAEGGRLFLVC---PNANAVSRQIAVKMGIISHNSAVTEAEFAHG 172
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 6e-07
Identities = 22/121 (18%), Positives = 45/121 (37%), Gaps = 35/121 (28%)
Query: 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM-----KMKYEEIPQLKYLQMDVR 106
RVL +G G + E + +D + +M+ + + + +++ Q
Sbjct: 24 RVLDIGAGAGHTALAFSPYVQE-CIGVDATK---EMVEVASSFAQEKGVENVRFQQGTAE 79
Query: 107 DMSFFEDESFDAVI---------DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157
+ F D+SFD + D + + EV+R+LK G ++L
Sbjct: 80 SLPF-PDDSFDIITCRYAAHHFSDVR----------------KAVREVARVLKQDGRFLL 122
Query: 158 I 158
+
Sbjct: 123 V 123
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Length = 260 | Back alignment and structure |
|---|
Score = 47.9 bits (114), Expect = 7e-07
Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 43/146 (29%)
Query: 27 GGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAID 86
G + +AL+ VL V G ++ + +V D++ D
Sbjct: 23 GSDLAKLMQIAALKGN--------EEVLDVATGGGHVANAFAPFV-KKVVAFDLTE---D 70
Query: 87 MM-----KMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI---------DKGTLDSLMCGT 132
++ ++ Q++Y+Q D M F DE F V +
Sbjct: 71 ILKVARAFIEGNGHQQVEYVQGDAEQMPF-TDERFHIVTCRIAAHHFPNPA--------- 120
Query: 133 NAPISASQMLGEVSRLLKPGGIYMLI 158
+ E R+LK GG +L+
Sbjct: 121 -------SFVSEAYRVLKKGGQLLLV 139
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} Length = 215 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 1e-06
Identities = 31/129 (24%), Positives = 51/129 (39%), Gaps = 31/129 (24%)
Query: 45 KYIPTSSRVLMVGCGNALMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQM 103
+ P S V GCG+ ++ + + D+ ++D DM ++P
Sbjct: 63 RQRPASLVVADFGCGDCRLASSIRNPVHCFDLASLDPRVTVCDM-----AQVP------- 110
Query: 104 DVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163
EDES D + SLM GTN L E +R+LKPGG+ + +
Sbjct: 111 -------LEDESVDVAV---FCLSLM-GTNIR----DFLEEANRVLKPGGLLKVA---EV 152
Query: 164 KARMIHLKW 172
+R ++
Sbjct: 153 SSRFEDVRT 161
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197 | Back alignment and structure |
|---|
Score = 46.5 bits (110), Expect = 2e-06
Identities = 25/128 (19%), Positives = 51/128 (39%), Gaps = 11/128 (8%)
Query: 42 FVRKYIPTSSRVLMVGCGN----ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--- 94
+++ ++ V+ CGN A ++ + ++G + DI AI K +
Sbjct: 15 YIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGR--VFGFDIQDKAIANTTKKLTDLNL 72
Query: 95 IPQLKYLQMDVRDMSFFEDESFDAVI--DKGTLDSLMCGTNAPISASQMLGEVSRLLKPG 152
I ++ ++ ++M + D AV+ + P + Q L + LL G
Sbjct: 73 IDRVTLIKDGHQNMDKYIDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTG 132
Query: 153 GIYMLITY 160
GI ++ Y
Sbjct: 133 GIITVVIY 140
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* Length = 298 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 3e-06
Identities = 20/137 (14%), Positives = 46/137 (33%), Gaps = 18/137 (13%)
Query: 29 SFDWYQRYSAL--RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGY-EDIVNIDISSVAI 85
SF +Y RY L R + +G G ++ ++ Y + ++I
Sbjct: 100 SFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIA 159
Query: 86 DMMKMKYEEIPQLKYLQMDVR--DMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLG 143
++ + + I L ++V D + + FD ++ + ++
Sbjct: 160 ELSR---KVIEGLGVDGVNVITGDETVIDGLEFDVLMVAALAEPKR----------RVFR 206
Query: 144 EVSRLLKPGGIYMLITY 160
+ R + + TY
Sbjct: 207 NIHRYVDTETRIIYRTY 223
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Length = 292 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 7e-06
Identities = 20/180 (11%), Positives = 47/180 (26%), Gaps = 26/180 (14%)
Query: 18 YWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVK-------D 70
+ + ++ + + ++L +G G + ++
Sbjct: 21 RFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSKVQAQYPG 80
Query: 71 GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----------FEDESFDAVI 120
+ ++ S+ I K + L+ ++ + E + +D +
Sbjct: 81 VCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKKELQKWDFIH 140
Query: 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE 180
L + L LL MLI + L WK Y +
Sbjct: 141 MIQMLYYVK-------DIPATLKFFHSLLGTNA-KMLIIVVSGSSGWDKL-WKKYGSRFP 191
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* Length = 381 | Back alignment and structure |
|---|
Score = 45.0 bits (106), Expect = 1e-05
Identities = 18/132 (13%), Positives = 51/132 (38%), Gaps = 21/132 (15%)
Query: 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP 96
AL+ + +VL +G G ++ + + ++V ++ ++ ++
Sbjct: 221 EALQERLGPEGVRGRQVLDLGAGYGALTLPLARM-GAEVVGVEDDLASVLSLQK------ 273
Query: 97 QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPIS---------ASQMLGEVSR 147
L+ + + + +A+ ++ D ++ N P A + +
Sbjct: 274 GLEANALKAQ---ALHSDVDEALTEEARFDIIVT--NPPFHVGGAVILDVAQAFVNVAAA 328
Query: 148 LLKPGGIYMLIT 159
L+PGG++ L++
Sbjct: 329 RLRPGGVFFLVS 340
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Length = 256 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-05
Identities = 23/109 (21%), Positives = 42/109 (38%), Gaps = 12/109 (11%)
Query: 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDM 108
R+L +G G+ M +D ID+SS+ K + EE+ ++ ++ D
Sbjct: 39 RILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY 98
Query: 109 SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157
+E D G + +++ LKPGGI ++
Sbjct: 99 --VANEKCDVAACVG---ATWIAGGFA----GAEELLAQSLKPGGIMLI 138
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} Length = 354 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 3e-05
Identities = 18/147 (12%), Positives = 39/147 (26%), Gaps = 36/147 (24%)
Query: 61 ALMSEDMVKDGYEDIVNIDISSVAIDMMKM--KYEEIPQLKYLQMDVRDMSFFEDESFDA 118
A + D+ + + + + +++L+ D R + D
Sbjct: 222 ASTLGPTSP-----VYAGDLDEKRLGLAREAALASGLSWIRFLRADARHL-PRFFPEVDR 275
Query: 119 VI----------DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMI 168
++ K L L L LL PGG L+T +
Sbjct: 276 ILANPPHGLRLGRKEGLFHLY---------WDFLRGALALLPPGGRVALLTLRPALLKRA 326
Query: 169 HL-------KWKVYNWKIE--LYIIAR 186
V + ++++ +
Sbjct: 327 LPPGFALRHARVVEQGGVYPRVFVLEK 353
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* Length = 313 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 3e-05
Identities = 30/180 (16%), Positives = 53/180 (29%), Gaps = 17/180 (9%)
Query: 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQ--- 97
VR+ VL +GCG K +V DI+ V++ + +YE++
Sbjct: 26 EKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRD 85
Query: 98 ------LKYLQMDVRDMSFFE-----DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVS 146
+++ D + FD + A ML
Sbjct: 86 SEYIFSAEFITADSSKELLIDKFRDPQMCFDICS---CQFVCHYSFESYEQADMMLRNAC 142
Query: 147 RLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFEKPGGCSSSMKSYLEPV 206
L PGG ++ T + + ++ E+Y + LE V
Sbjct: 143 ERLSPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGV 202
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275 | Back alignment and structure |
|---|
Score = 42.3 bits (99), Expect = 6e-05
Identities = 20/162 (12%), Positives = 45/162 (27%), Gaps = 45/162 (27%)
Query: 31 DWYQRYSALRPFVRKY--IPTSSRVLMVGCGNALMSEDMVK----DGYEDIVNIDISSVA 84
+R +A R + + + ++L +GCG +S + G+ + IDI+S
Sbjct: 23 TIQRRQTAHRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGH--VTGIDIASPD 80
Query: 85 IDMMKM-----------KYEEIPQLKYLQMDVRDMSFFEDESFDAVI---------DKGT 124
+ + + D+ D+ FD V+
Sbjct: 81 YGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGPIADQHFDRVVLAHSLWYFASANA 140
Query: 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 166
L L + + ++ + +
Sbjct: 141 LALLF-----------------KNMAAVCDHVDVAEWSMQPT 165
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Length = 383 | Back alignment and structure |
|---|
Score = 42.4 bits (99), Expect = 7e-05
Identities = 24/142 (16%), Positives = 56/142 (39%), Gaps = 27/142 (19%)
Query: 52 RVLMVGCG---NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE----------IPQL 98
VL +GCG + ++ +V + + ++ +D+ +++ + E +
Sbjct: 86 TVLDLGCGTGRDVYLASKLVGEHGK-VIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNV 144
Query: 99 KYLQMDVRDMSF-----FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGG 153
++L+ + +++ D S D VI C N + + E+ R+L+ GG
Sbjct: 145 RFLKGFIENLATAEPEGVPDSSVDIVI-------SNCVCNLSTNKLALFKEIHRVLRDGG 197
Query: 154 -IYMLITYGDPKARMIHLKWKV 174
+Y Y D + + +
Sbjct: 198 ELYFSDVYADRRLSEAAQQDPI 219
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Length = 375 | Back alignment and structure |
|---|
Score = 42.2 bits (99), Expect = 9e-05
Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 28/121 (23%)
Query: 48 PTSSRVLMVGCGNALMSEDMVK-DGYEDIVNIDISSVAIDMMKM-----KYEEIPQLKYL 101
++ +GCGN ++ ++ + +V +D S +A+ ++ E + + +++
Sbjct: 221 NLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFM 280
Query: 102 QMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISAS---------QMLGEVSRLLKPG 152
+ +S E F+AV+ N P +M R LK
Sbjct: 281 INNA--LSGVEPFRFNAVL-----------CNPPFHQQHALTDNVAWEMFHHARRCLKIN 327
Query: 153 G 153
G
Sbjct: 328 G 328
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP: c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A* Length = 278 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 1e-04
Identities = 19/128 (14%), Positives = 39/128 (30%), Gaps = 20/128 (15%)
Query: 32 WYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMK-- 89
+ R + K V+ + G +S + G ++ I+ +
Sbjct: 108 FSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVEN 167
Query: 90 ---MKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVS 146
K E+ + MD RD F + D ++ M + + + +
Sbjct: 168 IHLNKVEDR--MSAYNMDNRD--FPGENIADRIL--------M---GYVVRTHEFIPKAL 212
Query: 147 RLLKPGGI 154
+ K G I
Sbjct: 213 SIAKDGAI 220
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* Length = 185 | Back alignment and structure |
|---|
Score = 40.2 bits (94), Expect = 2e-04
Identities = 18/125 (14%), Positives = 43/125 (34%), Gaps = 9/125 (7%)
Query: 42 FVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMK--MKYEEIPQLK 99
F+ + + S V+ GN + + + + D+ A+ + I +
Sbjct: 15 FLAEVLDDESIVVDATMGNGNDTAFLAGLSKK-VYAFDVQEQALGKTSQRLSDLGIENTE 73
Query: 100 YLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISAS----QMLGEVSRLLKPGGIY 155
+ ++ + E A I L L + I+ + + ++ L+ GG
Sbjct: 74 LILDGHENLDHYVREPIRAAI--FNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRL 131
Query: 156 MLITY 160
++ Y
Sbjct: 132 AIMIY 136
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 Length = 194 | Back alignment and structure |
|---|
Score = 38.4 bits (90), Expect = 7e-04
Identities = 22/116 (18%), Positives = 45/116 (38%), Gaps = 23/116 (19%)
Query: 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE----EIPQLKYLQ 102
+ +L +GCG ++ + + + DI+ AI + K + + ++ +
Sbjct: 50 VDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVH 108
Query: 103 MDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISA-----SQMLGEVSRLLKPGG 153
D+ +D ++ +I TN PI A +++ E LLK G
Sbjct: 109 SDL--YENVKDRKYNKII-----------TNPPIRAGKEVLHRIIEEGKELLKDNG 151
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} Length = 302 | Back alignment and structure |
|---|
Score = 39.0 bits (90), Expect = 9e-04
Identities = 28/159 (17%), Positives = 50/159 (31%), Gaps = 23/159 (14%)
Query: 42 FVRKY---IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--- 95
+ K +VL + GN E +V D + AI +Y ++
Sbjct: 38 YCSKTFLDDSNKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSG 97
Query: 96 -----PQLKYLQMDVRDMSF-------FEDESFDAVIDKGTLDSLMCGTNAPISASQMLG 143
+ Y+Q +R +F F F+ + + + P + ++
Sbjct: 98 IKTKYYKFDYIQETIRSDTFVSSVREVFYFGKFNIIDWQFAIHYSF----HPRHYATVMN 153
Query: 144 EVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELY 182
+S L GG +LIT D K + L
Sbjct: 154 NLSELTASGG-KVLITTMDGDKLSKLTDKKTFIIHKNLP 191
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 252 | |||
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.91 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.89 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.89 | |
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.82 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.82 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.82 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.8 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.8 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.79 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.79 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.79 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.79 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.79 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.78 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.78 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.78 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.78 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.77 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.77 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.77 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.76 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.76 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.76 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.76 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.76 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.76 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.76 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.76 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.75 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.75 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.75 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.75 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.74 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.74 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.74 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.74 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.74 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.74 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.73 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.73 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.73 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.73 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.73 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.73 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.73 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.73 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.73 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.73 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.73 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.72 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.72 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.72 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.72 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.72 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.71 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.71 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.71 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.7 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.7 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.7 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.7 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.7 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.7 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.7 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.69 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.69 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.69 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.68 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.68 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.68 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.68 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.68 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.67 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.67 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.67 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.67 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.66 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.66 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.65 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.65 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.65 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.65 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.64 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.63 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.63 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.63 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.62 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.62 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.62 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.62 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.62 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.62 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.62 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.61 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.6 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.6 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.6 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.6 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.59 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.59 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.59 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.59 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.59 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.59 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.59 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.59 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.59 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.59 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.58 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.58 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.58 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.58 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.58 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.58 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.57 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.57 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.57 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.56 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.56 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.56 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.55 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.55 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.55 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.55 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.55 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.55 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.55 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.55 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.55 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.54 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.54 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.54 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.54 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.54 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.54 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.53 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.53 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.53 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.53 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.53 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.53 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.52 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.52 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.52 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.52 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.52 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.51 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.51 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.51 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.51 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.51 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.51 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 99.51 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.51 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.51 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.5 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.5 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.5 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.5 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.49 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.49 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.49 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.49 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.49 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.49 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.48 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.48 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.48 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.47 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 99.47 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.47 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.47 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 99.47 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 99.47 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.47 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.47 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 99.47 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.46 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 99.46 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.46 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.46 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 99.46 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.45 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.45 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 99.45 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.45 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 99.45 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 99.44 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.44 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 99.44 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 99.44 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.44 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.44 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 99.44 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 99.43 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.43 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.43 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 99.43 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 99.43 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 99.43 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.43 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 99.43 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.43 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.42 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 99.42 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 99.42 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.42 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.42 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.41 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.41 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 99.41 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 99.4 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.4 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 99.4 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 99.39 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.39 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.38 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 99.38 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.38 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 99.37 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 99.37 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.37 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.36 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 99.36 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.36 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.36 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.35 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.34 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 99.34 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 99.34 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.33 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 99.32 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 99.31 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.31 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.31 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 99.31 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 99.31 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 99.31 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.29 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.29 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 99.28 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 99.28 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 99.28 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 99.27 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 99.21 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 99.21 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 99.2 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 99.19 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 99.17 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 99.15 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 99.13 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 99.12 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 99.12 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 99.11 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 99.1 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 99.1 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 99.1 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 99.08 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 99.08 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 99.07 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 99.04 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 99.03 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 99.03 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.02 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.89 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.88 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.87 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 98.86 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 98.86 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.85 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 98.83 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.81 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.81 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.81 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.78 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 98.78 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.77 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.72 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 98.71 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 98.71 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 98.67 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 98.65 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 98.64 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 98.58 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.56 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.54 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 98.48 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 98.33 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 98.32 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 98.29 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 98.27 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 98.23 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 98.22 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 97.94 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 97.89 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 97.86 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.83 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 97.76 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 97.49 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 97.49 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 97.44 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 97.43 | |
| 3tka_A | 347 | Ribosomal RNA small subunit methyltransferase H; H | 97.4 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 97.36 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 97.28 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 97.27 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 97.14 | |
| 2uyo_A | 310 | Hypothetical protein ML2640; putative methyltransf | 96.84 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 96.77 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 96.76 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 96.42 | |
| 2qrv_A | 295 | DNA (cytosine-5)-methyltransferase 3A; DNA methylt | 96.37 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 96.34 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 96.31 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 96.19 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 96.16 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 95.9 | |
| 2py6_A | 409 | Methyltransferase FKBM; YP_546752.1, structural ge | 95.9 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 95.88 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 95.79 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 95.7 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 95.62 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 95.62 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 95.54 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 95.5 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 95.41 | |
| 3tos_A | 257 | CALS11; methyltransferase, calicheamicin, structur | 95.14 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 95.05 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 95.0 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 94.85 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 94.79 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.76 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 94.53 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.41 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 94.41 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 94.3 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 94.15 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 94.07 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 93.98 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.93 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 93.89 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 93.82 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 93.78 | |
| 1zkd_A | 387 | DUF185; NESG, RPR58, structural genomics, PSI, pro | 93.76 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 93.74 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 93.74 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 93.66 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 93.53 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 93.5 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 93.08 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 93.07 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 93.06 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 93.04 | |
| 3swr_A | 1002 | DNA (cytosine-5)-methyltransferase 1; epigenetics, | 92.92 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 92.86 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 92.84 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 92.82 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.67 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 92.45 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 92.32 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 92.32 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 92.27 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 92.07 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.07 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 92.06 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.96 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 91.95 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.93 | |
| 3ps9_A | 676 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 91.68 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.67 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 91.6 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 91.58 | |
| 2hwk_A | 320 | Helicase NSP2; rossman fold, alpha/beta/alpha, mul | 91.51 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 91.5 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 91.36 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 91.24 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 91.24 | |
| 3iei_A | 334 | Leucine carboxyl methyltransferase 1; LCMT-1, S-ad | 91.14 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 91.06 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 91.06 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 91.05 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 91.01 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 90.98 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.91 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 90.86 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 90.85 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 90.77 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 90.74 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 90.56 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 90.44 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 90.3 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 90.28 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 90.08 | |
| 3edm_A | 259 | Short chain dehydrogenase; structural genomics, ox | 90.07 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 90.04 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 90.0 | |
| 4ft4_B | 784 | DNA (cytosine-5)-methyltransferase 1; chromodomain | 89.98 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 89.97 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 89.93 | |
| 1wma_A | 276 | Carbonyl reductase [NADPH] 1; oxidoreductase; HET: | 89.3 | |
| 3av4_A | 1330 | DNA (cytosine-5)-methyltransferase 1; CXXC-type zi | 89.23 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 89.19 | |
| 3ijr_A | 291 | Oxidoreductase, short chain dehydrogenase/reducta; | 89.05 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 88.87 | |
| 4da9_A | 280 | Short-chain dehydrogenase/reductase; structural ge | 88.76 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 88.72 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 88.71 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 88.65 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 88.52 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 88.45 | |
| 4dkj_A | 403 | Cytosine-specific methyltransferase; CG-specificit | 88.44 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 88.42 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 88.22 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 88.19 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 88.01 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 87.95 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 87.88 | |
| 3is3_A | 270 | 17BETA-hydroxysteroid dehydrogenase; short chain d | 87.82 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 87.81 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 87.63 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 87.39 | |
| 3r3s_A | 294 | Oxidoreductase; structural genomics, csgid, center | 87.26 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 86.8 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 86.68 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 86.57 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 86.46 | |
| 3v2g_A | 271 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 86.04 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 85.94 | |
| 3u5t_A | 267 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 85.87 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 85.67 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 85.62 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 85.46 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 85.36 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 85.34 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 85.25 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 85.17 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 85.07 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 84.94 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 84.79 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 84.71 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 84.39 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 84.35 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 84.28 | |
| 4hp8_A | 247 | 2-deoxy-D-gluconate 3-dehydrogenase; enzyme functi | 84.28 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 84.03 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 83.78 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 83.63 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 83.58 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 83.19 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 83.16 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 83.05 | |
| 1g0o_A | 283 | Trihydroxynaphthalene reductase; protein-NADPH-act | 82.84 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 82.56 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 82.24 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 82.07 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 82.03 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 81.87 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 81.79 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 81.78 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 81.76 | |
| 3ksu_A | 262 | 3-oxoacyl-acyl carrier protein reductase; structur | 81.67 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 81.49 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 81.47 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 81.45 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 81.05 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 80.96 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 80.9 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 80.77 | |
| 2bgk_A | 278 | Rhizome secoisolariciresinol dehydrogenase; oxidor | 80.77 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 80.76 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 80.75 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 80.66 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 80.5 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 80.38 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 80.37 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 80.26 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 80.25 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 80.21 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 80.14 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 80.03 |
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=166.03 Aligned_cols=169 Identities=34% Similarity=0.745 Sum_probs=141.4
Q ss_pred CCCCChhhHHHHhccCC--CceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHH
Q 025475 11 YNYGDALYWNARYVQEG--GSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM 88 (252)
Q Consensus 11 ~~~~~~~~w~~~y~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a 88 (252)
+.|++.+||+++|.... ..+.|+.....+...+...++++.+|||+|||+|.++..+++.+..+++++|+|+.+++.+
T Consensus 2 ~~~~~~~~W~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a 81 (215)
T 2pxx_A 2 SGYREVEYWDQRYQGAADSAPYDWFGDFSSFRALLEPELRPEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAM 81 (215)
T ss_dssp GGGGCHHHHHHHTTTTTTSCCCCTTCCHHHHHHHHGGGCCTTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHH
T ss_pred CcccchhHHHHHhccCCCCCCcccccCHHHHHHHHHHhcCCCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHH
Confidence 46889999999998765 3478888888888999888888899999999999999999998755899999999999999
Q ss_pred HHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCC--------ChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 89 KMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN--------APISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 89 ~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~--------~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++....++++++++|+.+++ +++++||+|+++.+++++.+... +..+...+++++.++|+|||.+++.++
T Consensus 82 ~~~~~~~~~i~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~ 160 (215)
T 2pxx_A 82 QACYAHVPQLRWETMDVRKLD-FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVDQVLSEVSRVLVPGGRFISMTS 160 (215)
T ss_dssp HHHTTTCTTCEEEECCTTSCC-SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHHHHHHHHHHHEEEEEEEEEEES
T ss_pred HHhcccCCCcEEEEcchhcCC-CCCCcccEEEECcchhhhccccccccccccchhHHHHHHHHHHHHhCcCCCEEEEEeC
Confidence 999876568999999999886 77789999999999988722110 145779999999999999999999999
Q ss_pred CChhhhhhhccccccceeEE
Q 025475 161 GDPKARMIHLKWKVYNWKIE 180 (252)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (252)
..+......+......|...
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~ 180 (215)
T 2pxx_A 161 AAPHFRTRHYAQAYYGWSLR 180 (215)
T ss_dssp CCHHHHHHHHCCGGGCEEEE
T ss_pred CCcHHHHHHHhccccCcEEE
Confidence 98877666664455556544
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-24 Score=178.33 Aligned_cols=184 Identities=17% Similarity=0.237 Sum_probs=131.5
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC---CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG---YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFED 113 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~---~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~ 113 (252)
..++...++++.+|||+|||+|..+..+++.. ..+|+|+|+|+.|++.|+++++.. .+++++++|+.+++ +
T Consensus 61 ~~l~~~~~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~~~~-~-- 137 (261)
T 4gek_A 61 GMLAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIA-I-- 137 (261)
T ss_dssp HHHHHHHCCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTTTCC-C--
T ss_pred HHHHHHhCCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeeccccccc-c--
Confidence 34555668899999999999999999999862 348999999999999999987543 37999999999886 4
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh-hhhhccccccceeEEEEEecCCCCCCC
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA-RMIHLKWKVYNWKIELYIIARPGFEKP 192 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (252)
++||+|+++.++||+ +++++.+++++++++|+|||.+++.+...+.. ......... +. ......|+...
T Consensus 138 ~~~d~v~~~~~l~~~-----~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~~~~~~~~~--~~---~~~~~~g~s~~ 207 (261)
T 4gek_A 138 ENASMVVLNFTLQFL-----EPSERQALLDKIYQGLNPGGALVLSEKFSFEDAKVGELLFNM--HH---DFKRANGYSEL 207 (261)
T ss_dssp CSEEEEEEESCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHHHHHHHHHH--HH---HHHHHTTGGGS
T ss_pred cccccceeeeeeeec-----CchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHHHHHHHHHH--HH---HHHHHcCCCHH
Confidence 469999999999999 77888999999999999999999988654322 111110000 00 00112333322
Q ss_pred CC--CCCCCcccCCCcccCCCCCCccccccCCCCceEE------EEEEecCC
Q 025475 193 GG--CSSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFI------YVCKKMND 236 (252)
Q Consensus 193 ~~--~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~------~~~~K~~~ 236 (252)
.. ....++....+.+......+++++||..+.++|. ++++|+..
T Consensus 208 ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~~fq~~nF~~~iA~K~~~ 259 (261)
T 4gek_A 208 EISQKRSMLENVMLTDSVETHKARLHKAGFEHSELWFQCFNFGSLVALKAED 259 (261)
T ss_dssp TTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEEEEEETTEEEEEEECCTT
T ss_pred HHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEEEEEeccEEEEEEEEcCC
Confidence 21 1112234444555555666899999999887653 68899864
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-22 Score=164.30 Aligned_cols=141 Identities=18% Similarity=0.285 Sum_probs=113.9
Q ss_pred CCCChhhHHHHhccCCCceeeeccchhhHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHH
Q 025475 12 NYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMK 89 (252)
Q Consensus 12 ~~~~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~ 89 (252)
...+.+||+++|......+......+.+.+++... ..++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++.|+
T Consensus 29 ~~~~~~~Wd~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vLD~GCG~G~~~~~La~~G~-~V~gvD~S~~~i~~a~ 107 (252)
T 2gb4_A 29 QVLTLEDWKEKWVTRHISFHQEQGHQLLKKHLDTFLKGQSGLRVFFPLCGKAIEMKWFADRGH-TVVGVEISEIGIREFF 107 (252)
T ss_dssp CCCCHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHH
T ss_pred ccCCHHHHHHHHhcCCCCcccCCCCHHHHHHHHHhccCCCCCeEEEeCCCCcHHHHHHHHCCC-eEEEEECCHHHHHHHH
Confidence 45578999999987655543333333455555443 24677999999999999999999987 8999999999999998
Q ss_pred Hhhc-------------------CCCCCeEEEccccCCCCCCC-CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcc
Q 025475 90 MKYE-------------------EIPQLKYLQMDVRDMSFFED-ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLL 149 (252)
Q Consensus 90 ~~~~-------------------~~~~v~~~~~d~~~~~~~~~-~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L 149 (252)
++.. ...+++++++|+.+++ ..+ ++||+|++..+++++ +++++..+++++.++|
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~l~-~~~~~~FD~V~~~~~l~~l-----~~~~~~~~l~~~~~~L 181 (252)
T 2gb4_A 108 AEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFDLP-RANIGKFDRIWDRGALVAI-----NPGDHDRYADIILSLL 181 (252)
T ss_dssp HHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTTGG-GGCCCCEEEEEESSSTTTS-----CGGGHHHHHHHHHHTE
T ss_pred HhcccccccccccccccccccccCCCceEEEECccccCC-cccCCCEEEEEEhhhhhhC-----CHHHHHHHHHHHHHHc
Confidence 7653 1257999999999987 443 789999999999999 7788899999999999
Q ss_pred cCCcEEEEEE
Q 025475 150 KPGGIYMLIT 159 (252)
Q Consensus 150 ~~gG~l~i~~ 159 (252)
+|||++++.+
T Consensus 182 kpGG~l~l~~ 191 (252)
T 2gb4_A 182 RKEFQYLVAV 191 (252)
T ss_dssp EEEEEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999997654
|
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.82 E-value=5.3e-20 Score=145.56 Aligned_cols=114 Identities=19% Similarity=0.283 Sum_probs=96.3
Q ss_pred hHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--------------CCCCeEEEc
Q 025475 39 LRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------------IPQLKYLQM 103 (252)
Q Consensus 39 l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--------------~~~v~~~~~ 103 (252)
+.+++... ++++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++.|+++... ..+++++++
T Consensus 11 l~~~~~~l~~~~~~~vLD~GCG~G~~~~~la~~g~-~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 89 (203)
T 1pjz_A 11 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 89 (203)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHhcccCCCCEEEEeCCCCcHhHHHHHHCCC-eEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEEC
Confidence 44455443 45678999999999999999999976 999999999999999988642 357999999
Q ss_pred cccCCCCCCC-CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 104 DVRDMSFFED-ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 104 d~~~~~~~~~-~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+.+++ +.+ ++||+|++..+++|+ +.+++.+++++++++|||||++++..
T Consensus 90 d~~~l~-~~~~~~fD~v~~~~~l~~l-----~~~~~~~~l~~~~r~LkpgG~~~l~~ 140 (203)
T 1pjz_A 90 DFFALT-ARDIGHCAAFYDRAAMIAL-----PADMRERYVQHLEALMPQACSGLLIT 140 (203)
T ss_dssp CCSSST-HHHHHSEEEEEEESCGGGS-----CHHHHHHHHHHHHHHSCSEEEEEEEE
T ss_pred ccccCC-cccCCCEEEEEECcchhhC-----CHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 999987 544 789999999999999 77788899999999999999855544
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.6e-20 Score=148.01 Aligned_cols=139 Identities=21% Similarity=0.259 Sum_probs=113.4
Q ss_pred hhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC
Q 025475 16 ALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI 95 (252)
Q Consensus 16 ~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~ 95 (252)
.++|++.|......+........+..++.....++.+|||+|||+|.++..++..+. +++++|+|+.+++.++++....
T Consensus 33 ~~~w~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~ 111 (235)
T 3lcc_A 33 EGGWEKCWEEEITPWDQGRATPLIVHLVDTSSLPLGRALVPGCGGGHDVVAMASPER-FVVGLDISESALAKANETYGSS 111 (235)
T ss_dssp HHHHHHHHHTTCCTTCCSSCCHHHHHHHHTTCSCCEEEEEETCTTCHHHHHHCBTTE-EEEEECSCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCCcccCCCCHHHHHHHHhcCCCCCCEEEeCCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHhhcc
Confidence 578999998765554433334455666655444455999999999999999988754 8999999999999999998642
Q ss_pred ---CCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 96 ---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 96 ---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.+++++++|+.+.+ +.++||+|++..+++|+ +++++..+++++.++|+|||.+++..+..
T Consensus 112 ~~~~~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 174 (235)
T 3lcc_A 112 PKAEYFSFVKEDVFTWR--PTELFDLIFDYVFFCAI-----EPEMRPAWAKSMYELLKPDGELITLMYPI 174 (235)
T ss_dssp GGGGGEEEECCCTTTCC--CSSCEEEEEEESSTTTS-----CGGGHHHHHHHHHHHEEEEEEEEEEECCC
T ss_pred CCCcceEEEECchhcCC--CCCCeeEEEEChhhhcC-----CHHHHHHHHHHHHHHCCCCcEEEEEEecc
Confidence 36899999999876 45689999999999999 66799999999999999999999987643
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.4e-20 Score=151.02 Aligned_cols=113 Identities=20% Similarity=0.349 Sum_probs=99.0
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCe
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
..+.+.+....+.+.+|||+|||+|.++..+++.+. +|+|+|+|+.|++.|++ .++++++++|+.+++ +++++|
T Consensus 27 ~~l~~~l~~~~~~~~~vLDvGcGtG~~~~~l~~~~~-~v~gvD~s~~ml~~a~~----~~~v~~~~~~~e~~~-~~~~sf 100 (257)
T 4hg2_A 27 RALFRWLGEVAPARGDALDCGCGSGQASLGLAEFFE-RVHAVDPGEAQIRQALR----HPRVTYAVAPAEDTG-LPPASV 100 (257)
T ss_dssp HHHHHHHHHHSSCSSEEEEESCTTTTTHHHHHTTCS-EEEEEESCHHHHHTCCC----CTTEEEEECCTTCCC-CCSSCE
T ss_pred HHHHHHHHHhcCCCCCEEEEcCCCCHHHHHHHHhCC-EEEEEeCcHHhhhhhhh----cCCceeehhhhhhhc-ccCCcc
Confidence 456777877777778999999999999999999875 99999999999987754 368999999999998 899999
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+|++..++||+ +..+++++++|+|||||.|++..+..+
T Consensus 101 D~v~~~~~~h~~--------~~~~~~~e~~rvLkpgG~l~~~~~~~~ 139 (257)
T 4hg2_A 101 DVAIAAQAMHWF--------DLDRFWAELRRVARPGAVFAAVTYGLT 139 (257)
T ss_dssp EEEEECSCCTTC--------CHHHHHHHHHHHEEEEEEEEEEEECCC
T ss_pred cEEEEeeehhHh--------hHHHHHHHHHHHcCCCCEEEEEECCCC
Confidence 999999999887 356799999999999999999887643
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-19 Score=144.40 Aligned_cols=117 Identities=31% Similarity=0.564 Sum_probs=104.6
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCe
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
..+...+...++++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.. ..+++++++|+.+++ +++++|
T Consensus 41 ~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~-~~~~~f 117 (242)
T 3l8d_A 41 STIIPFFEQYVKKEAEVLDVGCGDGYGTYKLSRTGY-KAVGVDISEVMIQKGKERGE-GPDLSFIKGDLSSLP-FENEQF 117 (242)
T ss_dssp TTHHHHHHHHSCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHTTTC-BTTEEEEECBTTBCS-SCTTCE
T ss_pred HHHHHHHHHHcCCCCeEEEEcCCCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhcc-cCCceEEEcchhcCC-CCCCCc
Confidence 456777888888889999999999999999999965 89999999999999998863 357999999999987 778899
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+|++..+++|+ .++..++++++++|+|||.+++.++...
T Consensus 118 D~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 157 (242)
T 3l8d_A 118 EAIMAINSLEWT-------EEPLRALNEIKRVLKSDGYACIAILGPT 157 (242)
T ss_dssp EEEEEESCTTSS-------SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred cEEEEcChHhhc-------cCHHHHHHHHHHHhCCCeEEEEEEcCCc
Confidence 999999999999 8889999999999999999999886543
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.80 E-value=5e-19 Score=144.30 Aligned_cols=111 Identities=23% Similarity=0.363 Sum_probs=98.5
Q ss_pred HHHhhCC--CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 42 FVRKYIP--TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 42 ~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.+...++ ++.+|||+|||+|.++..+++.+..+++++|+|+.+++.++++.. ..+++++++|+.+++ +++++||+|
T Consensus 35 ~l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~-~~~~~~~~~d~~~~~-~~~~~fD~v 112 (253)
T 3g5l_A 35 ELKKMLPDFNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT-SPVVCYEQKAIEDIA-IEPDAYNVV 112 (253)
T ss_dssp HHHTTCCCCTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC-CTTEEEEECCGGGCC-CCTTCEEEE
T ss_pred HHHHhhhccCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc-cCCeEEEEcchhhCC-CCCCCeEEE
Confidence 3444444 677999999999999999999976699999999999999999986 458999999999887 778899999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++..+++|+ .++..++++++++|+|||.+++....
T Consensus 113 ~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 147 (253)
T 3g5l_A 113 LSSLALHYI-------ASFDDICKKVYINLKSSGSFIFSVEH 147 (253)
T ss_dssp EEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEchhhhhh-------hhHHHHHHHHHHHcCCCcEEEEEeCC
Confidence 999999999 88999999999999999999997643
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.6e-19 Score=144.27 Aligned_cols=136 Identities=14% Similarity=0.188 Sum_probs=98.5
Q ss_pred ChhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 15 ~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
+.+||+..................+.+.+... .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~ 86 (250)
T 2p7i_A 9 DQEIKDTAGHKYAYNFDFDVMHPFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD 86 (250)
T ss_dssp --------------CHHHHTHHHHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS
T ss_pred CHHHHhhHHHHhcCccchhhHHHHHHHHHHhh-cCCCcEEEECCCCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhhhC
Confidence 35677765443322111111112234444443 3566999999999999999998865 899999999999999998754
Q ss_pred CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHH-HcccCCcEEEEEEcCCh
Q 025475 95 IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVS-RLLKPGGIYMLITYGDP 163 (252)
Q Consensus 95 ~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~-~~L~~gG~l~i~~~~~~ 163 (252)
+++++++|+.+.. ++++||+|++..+++|+ .++..++++++ ++|+|||.+++.++...
T Consensus 87 --~v~~~~~d~~~~~--~~~~fD~v~~~~~l~~~-------~~~~~~l~~~~~~~LkpgG~l~i~~~~~~ 145 (250)
T 2p7i_A 87 --GITYIHSRFEDAQ--LPRRYDNIVLTHVLEHI-------DDPVALLKRINDDWLAEGGRLFLVCPNAN 145 (250)
T ss_dssp --CEEEEESCGGGCC--CSSCEEEEEEESCGGGC-------SSHHHHHHHHHHTTEEEEEEEEEEEECTT
T ss_pred --CeEEEEccHHHcC--cCCcccEEEEhhHHHhh-------cCHHHHHHHHHHHhcCCCCEEEEEcCChH
Confidence 7899999998873 66789999999999999 78899999999 99999999999886644
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.1e-19 Score=149.31 Aligned_cols=145 Identities=17% Similarity=0.166 Sum_probs=106.0
Q ss_pred CCCChhhHHHHhccCCCce------eeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHH
Q 025475 12 NYGDALYWNARYVQEGGSF------DWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAI 85 (252)
Q Consensus 12 ~~~~~~~w~~~y~~~~~~~------~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i 85 (252)
.|+...||+..|......+ .|. ...+.+++.....++.+|||+|||+|.++..++..+..+|+|+|+|+.|+
T Consensus 14 ~~~~~~~~~~~y~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l 91 (263)
T 2a14_A 14 HFLPRDYLATYYSFDGSPSPEAEMLKFN--LECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNR 91 (263)
T ss_dssp HCCHHHHHHHHCCCCCSCCHHHHHHHHH--HHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHH
T ss_pred ccCHHHHHHHhcCCCcccchhhHHHHHH--HHHHHHHhcCCCCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHH
Confidence 3566789999887654432 121 11233333333346679999999999888877777766899999999999
Q ss_pred HHHHHhhcCCC-------------------------------CCe-EEEccccCCCCC---CCCCeeEEEeccchhhhcC
Q 025475 86 DMMKMKYEEIP-------------------------------QLK-YLQMDVRDMSFF---EDESFDAVIDKGTLDSLMC 130 (252)
Q Consensus 86 ~~a~~~~~~~~-------------------------------~v~-~~~~d~~~~~~~---~~~~~D~v~~~~~l~~~~~ 130 (252)
+.++++++..+ +++ ++++|+.+..++ ..++||+|+++.++||+
T Consensus 92 ~~a~~~~~~~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i-- 169 (263)
T 2a14_A 92 EELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECA-- 169 (263)
T ss_dssp HHHHHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH--
T ss_pred HHHHHHHhcCCCcccchHHHHHHHhcCCCCcchhhHHHHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHh--
Confidence 99998764321 122 889999874212 35689999999999986
Q ss_pred CCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 131 GTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.++.++..+++++++++|||||.+++....
T Consensus 170 -~~~~~~~~~~l~~i~r~LKPGG~li~~~~~ 199 (263)
T 2a14_A 170 -CCSLDAYRAALCNLASLLKPGGHLVTTVTL 199 (263)
T ss_dssp -CSSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred -cCCHHHHHHHHHHHHHHcCCCcEEEEEEee
Confidence 223478889999999999999999998743
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=2e-18 Score=137.39 Aligned_cols=143 Identities=15% Similarity=0.226 Sum_probs=111.6
Q ss_pred CCCChhhHHHHhccCCCceeeeccc---hhhHHHHHhhC--CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHH
Q 025475 12 NYGDALYWNARYVQEGGSFDWYQRY---SALRPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAID 86 (252)
Q Consensus 12 ~~~~~~~w~~~y~~~~~~~~~~~~~---~~l~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~ 86 (252)
...+.++|++.|... ..+...... ..+..++...+ .++.+|||+|||+|.++..+++.+. +++++|+++.+++
T Consensus 10 ~~~~~~~~~~~~~~~-~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~ 87 (216)
T 3ofk_A 10 VDNTYQSLERELAND-DPWRLDDNPFERERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPHCK-RLTVIDVMPRAIG 87 (216)
T ss_dssp CSSHHHHHHHHHTSS-SGGGTTTCHHHHHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGGEE-EEEEEESCHHHHH
T ss_pred ecchHHHHHHHhcCC-CCcccccCHhHHHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHcCC-EEEEEECCHHHHH
Confidence 345678899988764 222221111 12334444333 3456999999999999999999864 9999999999999
Q ss_pred HHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 87 MMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 87 ~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.++++....++++++++|+.+.+ ++++||+|+++.+++|+ ++++...++++++.++|+|||.+++.+...
T Consensus 88 ~a~~~~~~~~~~~~~~~d~~~~~--~~~~fD~v~~~~~l~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 157 (216)
T 3ofk_A 88 RACQRTKRWSHISWAATDILQFS--TAELFDLIVVAEVLYYL----EDMTQMRTAIDNMVKMLAPGGHLVFGSARD 157 (216)
T ss_dssp HHHHHTTTCSSEEEEECCTTTCC--CSCCEEEEEEESCGGGS----SSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred HHHHhcccCCCeEEEEcchhhCC--CCCCccEEEEccHHHhC----CCHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence 99999877678999999999986 57789999999999999 224556788999999999999999987543
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.9e-19 Score=141.88 Aligned_cols=135 Identities=28% Similarity=0.525 Sum_probs=100.0
Q ss_pred hhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC
Q 025475 16 ALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI 95 (252)
Q Consensus 16 ~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~ 95 (252)
.+||+..+...... ...+...+...++++.+|||+|||+|.++..++..+. +++++|+++.+++.++++....
T Consensus 3 ~~yw~~~~~~~~~~------~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~ 75 (235)
T 3sm3_A 3 ESYWEKVSGKNIPS------SLDLYPIIHNYLQEDDEILDIGCGSGKISLELASKGY-SVTGIDINSEAIRLAETAARSP 75 (235)
T ss_dssp ---------------------CCCCTTHHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTCC
T ss_pred hhHHHHHhhccCCC------HHHHHHHHHHhCCCCCeEEEECCCCCHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhc
Confidence 57898877643221 1122334555677888999999999999999999965 9999999999999999988543
Q ss_pred C-------CCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 96 P-------QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 96 ~-------~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+ ++.++++|+.+++ +++++||+|++..+++|+ +++.....++++++++|+|||.+++.++..
T Consensus 76 ~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 144 (235)
T 3sm3_A 76 GLNQKTGGKAEFKVENASSLS-FHDSSFDFAVMQAFLTSV----PDPKERSRIIKEVFRVLKPGAYLYLVEFGQ 144 (235)
T ss_dssp SCCSSSSCEEEEEECCTTSCC-SCTTCEEEEEEESCGGGC----CCHHHHHHHHHHHHHHEEEEEEEEEEEEBC
T ss_pred CCccccCcceEEEEecccccC-CCCCceeEEEEcchhhcC----CCHHHHHHHHHHHHHHcCCCeEEEEEECCc
Confidence 2 4789999999887 778899999999999998 333445599999999999999999988654
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-18 Score=131.83 Aligned_cols=112 Identities=20% Similarity=0.398 Sum_probs=98.1
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
.++...++++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++. ++++++++|+.+.+ +++++||+|+
T Consensus 38 ~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~~~~~~~~a~~~~---~~~~~~~~d~~~~~-~~~~~~D~i~ 112 (195)
T 3cgg_A 38 RLIDAMAPRGAKILDAGCGQGRIGGYLSKQGH-DVLGTDLDPILIDYAKQDF---PEARWVVGDLSVDQ-ISETDFDLIV 112 (195)
T ss_dssp HHHHHHSCTTCEEEEETCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC---TTSEEEECCTTTSC-CCCCCEEEEE
T ss_pred HHHHHhccCCCeEEEECCCCCHHHHHHHHCCC-cEEEEcCCHHHHHHHHHhC---CCCcEEEcccccCC-CCCCceeEEE
Confidence 45666677888999999999999999999864 9999999999999999986 35899999999876 6778899999
Q ss_pred ec-cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 121 DK-GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 121 ~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
++ .+++|+ +.++...+++++.++|+|||.+++.....
T Consensus 113 ~~~~~~~~~-----~~~~~~~~l~~~~~~l~~~G~l~~~~~~~ 150 (195)
T 3cgg_A 113 SAGNVMGFL-----AEDGREPALANIHRALGADGRAVIGFGAG 150 (195)
T ss_dssp ECCCCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEETT
T ss_pred ECCcHHhhc-----ChHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 98 688888 67788999999999999999999977554
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-19 Score=143.46 Aligned_cols=109 Identities=18% Similarity=0.265 Sum_probs=96.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+.++.+|||+|||+|.++..+++.+ ..+++++|+|+.+++.+++++.. .++++++++|+.+.+ +++++||+|++.
T Consensus 35 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~ 113 (219)
T 3dh0_A 35 LKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIP-LPDNTVDFIFMA 113 (219)
T ss_dssp CCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCS-SCSSCEEEEEEE
T ss_pred CCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCC-CCCCCeeEEEee
Confidence 4567799999999999999999884 45999999999999999998743 347999999999887 778899999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.+++|+ .++..+++++.++|+|||.+++.++...
T Consensus 114 ~~l~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 147 (219)
T 3dh0_A 114 FTFHEL-------SEPLKFLEELKRVAKPFAYLAIIDWKKE 147 (219)
T ss_dssp SCGGGC-------SSHHHHHHHHHHHEEEEEEEEEEEECSS
T ss_pred hhhhhc-------CCHHHHHHHHHHHhCCCeEEEEEEeccc
Confidence 999999 7889999999999999999999886543
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=140.80 Aligned_cols=137 Identities=18% Similarity=0.290 Sum_probs=109.8
Q ss_pred hhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC
Q 025475 16 ALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI 95 (252)
Q Consensus 16 ~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~ 95 (252)
..+|+..+..... .|......+...+....+++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++..
T Consensus 19 a~~yd~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~-- 93 (263)
T 3pfg_A 19 AELYDLVHQGKGK--DYHREAADLAALVRRHSPKAASLLDVACGTGMHLRHLADSFG-TVEGLELSADMLAIARRRNP-- 93 (263)
T ss_dssp HHHHHHHHHHTTC--CHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHTTTSS-EEEEEESCHHHHHHHHHHCT--
T ss_pred HHHHHHHhhcCCC--CHHHHHHHHHHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcCC-eEEEEECCHHHHHHHHhhCC--
Confidence 4566665543211 222333456667777777788999999999999999999865 89999999999999999864
Q ss_pred CCCeEEEccccCCCCCCCCCeeEEEecc-chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 96 PQLKYLQMDVRDMSFFEDESFDAVIDKG-TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 96 ~~v~~~~~d~~~~~~~~~~~~D~v~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+++++++|+.+++ . +++||+|++.. +++|+ +++++...++++++++|+|||.+++..+..+.
T Consensus 94 -~~~~~~~d~~~~~-~-~~~fD~v~~~~~~l~~~----~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~ 156 (263)
T 3pfg_A 94 -DAVLHHGDMRDFS-L-GRRFSAVTCMFSSIGHL----AGQAELDAALERFAAHVLPDGVVVVEPWWFPE 156 (263)
T ss_dssp -TSEEEECCTTTCC-C-SCCEEEEEECTTGGGGS----CHHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred -CCEEEECChHHCC-c-cCCcCEEEEcCchhhhc----CCHHHHHHHHHHHHHhcCCCcEEEEEeccChh
Confidence 7899999999987 4 67899999998 99998 33467889999999999999999997665444
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.78 E-value=7.7e-19 Score=138.36 Aligned_cols=135 Identities=20% Similarity=0.336 Sum_probs=104.5
Q ss_pred hHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-C
Q 025475 18 YWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-P 96 (252)
Q Consensus 18 ~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~ 96 (252)
||+++|..... .|..........+...++++ +|||+|||+|.++..+++.+. +++++|+|+.+++.++++.... .
T Consensus 1 ~W~~~y~~~~~--~~~~~~~~~l~~~~~~~~~~-~vLdiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~ 76 (202)
T 2kw5_A 1 MWDERFSQSEY--VYGTEPNDFLVSVANQIPQG-KILCLAEGEGRNACFLASLGY-EVTAVDQSSVGLAKAKQLAQEKGV 76 (202)
T ss_dssp CCCCCCCCCCC--CCCCCCCSSHHHHHHHSCSS-EEEECCCSCTHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHTC
T ss_pred Chhhhhcccch--hhccCchHHHHHHHHhCCCC-CEEEECCCCCHhHHHHHhCCC-eEEEEECCHHHHHHHHHHHHhcCC
Confidence 57777765432 23223333333333456667 999999999999999998865 9999999999999999987532 2
Q ss_pred CCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 97 QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 97 ~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
++.++++|+.+.+ +++++||+|++.. .|+ +..+...+++++.++|+|||.+++.++....
T Consensus 77 ~~~~~~~d~~~~~-~~~~~fD~v~~~~--~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 136 (202)
T 2kw5_A 77 KITTVQSNLADFD-IVADAWEGIVSIF--CHL-----PSSLRQQLYPKVYQGLKPGGVFILEGFAPEQ 136 (202)
T ss_dssp CEEEECCBTTTBS-CCTTTCSEEEEEC--CCC-----CHHHHHHHHHHHHTTCCSSEEEEEEEECTTT
T ss_pred ceEEEEcChhhcC-CCcCCccEEEEEh--hcC-----CHHHHHHHHHHHHHhcCCCcEEEEEEecccc
Confidence 7899999999887 7778999999954 344 4578999999999999999999998876443
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.2e-18 Score=135.14 Aligned_cols=133 Identities=21% Similarity=0.376 Sum_probs=107.6
Q ss_pred CCCChhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHh
Q 025475 12 NYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMK 91 (252)
Q Consensus 12 ~~~~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~ 91 (252)
.+...+||+..|...... ..+...+. ..++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~-------~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~ 73 (199)
T 2xvm_A 4 VIRDENYFTDKYELTRTH-------SEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGY-DVDAWDKNAMSIANVERI 73 (199)
T ss_dssp CCCCTTHHHHHHTCCCCC-------HHHHHHTT--TSCSCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHH
T ss_pred EEechHHHhhhhcccccc-------HHHHHHhh--ccCCCeEEEEcCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHH
Confidence 356778999988654221 12333332 23566999999999999999999865 999999999999999998
Q ss_pred hcC--CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 92 YEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 92 ~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
... .++++++++|+.+.+ + +++||+|++..+++|+ ++++...+++++.++|+|||.+++.+..
T Consensus 74 ~~~~~~~~~~~~~~d~~~~~-~-~~~~D~v~~~~~l~~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~ 138 (199)
T 2xvm_A 74 KSIENLDNLHTRVVDLNNLT-F-DRQYDFILSTVVLMFL-----EAKTIPGLIANMQRCTKPGGYNLIVAAM 138 (199)
T ss_dssp HHHHTCTTEEEEECCGGGCC-C-CCCEEEEEEESCGGGS-----CGGGHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred HHhCCCCCcEEEEcchhhCC-C-CCCceEEEEcchhhhC-----CHHHHHHHHHHHHHhcCCCeEEEEEEee
Confidence 743 347899999999987 5 7789999999999999 6678999999999999999998887643
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-18 Score=141.91 Aligned_cols=107 Identities=14% Similarity=0.239 Sum_probs=96.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.++.+|||+|||+|.++..+++.+..+++++|+|+.+++.+++++...++++++++|+.+.+ +++++||+|++..+++|
T Consensus 92 ~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~ 170 (254)
T 1xtp_A 92 HGTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT-LPPNTYDLIVIQWTAIY 170 (254)
T ss_dssp CCCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC-CCSSCEEEEEEESCGGG
T ss_pred cCCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhccCCceEEEEccHHHCC-CCCCCeEEEEEcchhhh
Confidence 35679999999999999999888655799999999999999999865567899999999887 77789999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+ +.+++..++++++++|+|||.+++.++
T Consensus 171 ~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 198 (254)
T 1xtp_A 171 L-----TDADFVKFFKHCQQALTPNGYIFFKEN 198 (254)
T ss_dssp S-----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred C-----CHHHHHHHHHHHHHhcCCCeEEEEEec
Confidence 9 667899999999999999999999885
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.1e-18 Score=141.33 Aligned_cols=108 Identities=18% Similarity=0.245 Sum_probs=94.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++.+|||+|||+|.++..+++.+..+++++|+|+.+++.+++++... .+++++++|+.+.+ +.+++||+|++..+++
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 157 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYDVIWIQWVIG 157 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-CCSSCEEEEEEESCGG
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcC-CCCCCEEEEEEcchhh
Confidence 46799999999999999998886569999999999999999988643 36889999998887 6677899999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|+ +.+....+++++.++|+|||.+++.++..
T Consensus 158 ~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 188 (241)
T 2ex4_A 158 HL-----TDQHLAEFLRRCKGSLRPNGIIVIKDNMA 188 (241)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEEB
T ss_pred hC-----CHHHHHHHHHHHHHhcCCCeEEEEEEccC
Confidence 99 55557799999999999999999987543
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3.4e-18 Score=135.97 Aligned_cols=108 Identities=18% Similarity=0.202 Sum_probs=95.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++ ...++++++++|+.++ .++++||+|++..+++
T Consensus 44 ~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~--~~~~~~~~~~~d~~~~--~~~~~~D~v~~~~~l~ 118 (218)
T 3ou2_A 44 GNIRGDVLELASGTGYWTRHLSGLAD-RVTALDGSAEMIAEAGR--HGLDNVEFRQQDLFDW--TPDRQWDAVFFAHWLA 118 (218)
T ss_dssp TTSCSEEEEESCTTSHHHHHHHHHSS-EEEEEESCHHHHHHHGG--GCCTTEEEEECCTTSC--CCSSCEEEEEEESCGG
T ss_pred CCCCCeEEEECCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHh--cCCCCeEEEecccccC--CCCCceeEEEEechhh
Confidence 45667999999999999999999865 99999999999999998 3335799999999887 4678999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
|+ +.+....++++++++|+|||.+++.++..+.
T Consensus 119 ~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 151 (218)
T 3ou2_A 119 HV-----PDDRFEAFWESVRSAVAPGGVVEFVDVTDHE 151 (218)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEECCCC
T ss_pred cC-----CHHHHHHHHHHHHHHcCCCeEEEEEeCCCCc
Confidence 99 5555799999999999999999999987654
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.7e-18 Score=134.65 Aligned_cols=104 Identities=17% Similarity=0.223 Sum_probs=92.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++.. .+++++++|+.+++ .+ ++||+|++..+++|+
T Consensus 45 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~--~~~~~~~~d~~~~~-~~-~~fD~v~~~~~l~~~ 119 (220)
T 3hnr_A 45 SFGNVLEFGVGTGNLTNKLLLAGR-TVYGIEPSREMRMIAKEKLP--KEFSITEGDFLSFE-VP-TSIDTIVSTYAFHHL 119 (220)
T ss_dssp CCSEEEEECCTTSHHHHHHHHTTC-EEEEECSCHHHHHHHHHHSC--TTCCEESCCSSSCC-CC-SCCSEEEEESCGGGS
T ss_pred CCCeEEEeCCCCCHHHHHHHhCCC-eEEEEeCCHHHHHHHHHhCC--CceEEEeCChhhcC-CC-CCeEEEEECcchhcC
Confidence 677999999999999999999865 99999999999999999876 57899999999987 55 899999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+......+++++.++|+|||.+++.++..
T Consensus 120 -----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 148 (220)
T 3hnr_A 120 -----TDDEKNVAIAKYSQLLNKGGKIVFADTIF 148 (220)
T ss_dssp -----CHHHHHHHHHHHHHHSCTTCEEEEEEECB
T ss_pred -----ChHHHHHHHHHHHHhcCCCCEEEEEeccc
Confidence 44444559999999999999999988543
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.8e-18 Score=132.67 Aligned_cols=104 Identities=14% Similarity=0.283 Sum_probs=94.8
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
+.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++. ++++++++|+.+++ +++++||+|++..+++|+
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~- 115 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGH-QIEGLEPATRLVELARQTH---PSVTFHHGTITDLS-DSPKRWAGLLAWYSLIHM- 115 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTC-CEEEECCCHHHHHHHHHHC---TTSEEECCCGGGGG-GSCCCEEEEEEESSSTTC-
T ss_pred CCeEEEecCCCCHHHHHHHhcCC-eEEEEeCCHHHHHHHHHhC---CCCeEEeCcccccc-cCCCCeEEEEehhhHhcC-
Confidence 67999999999999999999865 9999999999999999885 47899999999987 778899999999999999
Q ss_pred CCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 130 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+.+++..++++++++|+|||.+++..+..+
T Consensus 116 ----~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 145 (203)
T 3h2b_A 116 ----GPGELPDALVALRMAVEDGGGLLMSFFSGP 145 (203)
T ss_dssp ----CTTTHHHHHHHHHHTEEEEEEEEEEEECCS
T ss_pred ----CHHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 666999999999999999999999886553
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.5e-18 Score=133.62 Aligned_cols=111 Identities=21% Similarity=0.307 Sum_probs=96.8
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
...+...++++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++. ++.++++|+.+++ .+++||+|
T Consensus 34 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~----~~~~~~~d~~~~~--~~~~fD~v 106 (211)
T 3e23_A 34 LTKFLGELPAGAKILELGCGAGYQAEAMLAAGF-DVDATDGSPELAAEASRRL----GRPVRTMLFHQLD--AIDAYDAV 106 (211)
T ss_dssp HHHHHTTSCTTCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHH----TSCCEECCGGGCC--CCSCEEEE
T ss_pred HHHHHHhcCCCCcEEEECCCCCHHHHHHHHcCC-eEEEECCCHHHHHHHHHhc----CCceEEeeeccCC--CCCcEEEE
Confidence 334444567788999999999999999999865 9999999999999999987 5688899998886 67889999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
++..+++|+ +.+++..++++++++|+|||.+++.....
T Consensus 107 ~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 144 (211)
T 3e23_A 107 WAHACLLHV-----PRDELADVLKLIWRALKPGGLFYASYKSG 144 (211)
T ss_dssp EECSCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEECC
T ss_pred EecCchhhc-----CHHHHHHHHHHHHHhcCCCcEEEEEEcCC
Confidence 999999999 66699999999999999999999987543
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=4.6e-18 Score=139.21 Aligned_cols=109 Identities=18% Similarity=0.293 Sum_probs=98.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.++.+|||+|||+|.++..+++....+++++|+|+.+++.++++....++++++++|+.+.+ +++++||+|++..+++
T Consensus 53 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~ 131 (266)
T 3ujc_A 53 LNENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVSGNNKIIFEANDILTKE-FPENNFDLIYSRDAIL 131 (266)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCCSCTTEEEEECCTTTCC-CCTTCEEEEEEESCGG
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhhcCCCeEEEECccccCC-CCCCcEEEEeHHHHHH
Confidence 346779999999999999999987334999999999999999999866578999999999987 7788999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+ ++.++..++++++++|+|||.+++.++.
T Consensus 132 ~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 161 (266)
T 3ujc_A 132 AL-----SLENKNKLFQKCYKWLKPTGTLLITDYC 161 (266)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hc-----ChHHHHHHHHHHHHHcCCCCEEEEEEec
Confidence 99 8899999999999999999999998854
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.6e-18 Score=142.06 Aligned_cols=146 Identities=15% Similarity=0.183 Sum_probs=107.5
Q ss_pred CCChhhHHHHhccCCCcee--eecc--chhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHH
Q 025475 13 YGDALYWNARYVQEGGSFD--WYQR--YSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM 88 (252)
Q Consensus 13 ~~~~~~w~~~y~~~~~~~~--~~~~--~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a 88 (252)
|...+||+..|......+. +... ...+..++.....++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a 95 (265)
T 2i62_A 16 FNPRDYLEKYYSFGSRHCAENEILRHLLKNLFKIFCLGAVKGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWEL 95 (265)
T ss_dssp CCHHHHHHHHHCCCSSCHHHHHHHHHHHHHHHHHHHSSSCCEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHH
T ss_pred cCHHHHHHHHhCcCCcchhHHHHHHhhHHHHHHHhcccccCCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHH
Confidence 5556799998876544321 1111 01222333332345669999999999999998887655899999999999999
Q ss_pred HHhhcCCCC-------------------------------C-eEEEccccCCCCCCC---CCeeEEEeccchhhhcCCCC
Q 025475 89 KMKYEEIPQ-------------------------------L-KYLQMDVRDMSFFED---ESFDAVIDKGTLDSLMCGTN 133 (252)
Q Consensus 89 ~~~~~~~~~-------------------------------v-~~~~~d~~~~~~~~~---~~~D~v~~~~~l~~~~~~~~ 133 (252)
++++...+. + +++++|+.+....++ ++||+|++..+++++ .+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~---~~ 172 (265)
T 2i62_A 96 QKWLKKEPGAFDWSPVVTYVCDLEGNRMKGPEKEEKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAA---CP 172 (265)
T ss_dssp HHHHTTCTTCCCCHHHHHHHHHHTTTCSCHHHHHHHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHH---CS
T ss_pred HHHHhcCCccccchhhhhhhhcccccccchHHHHHHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhh---cC
Confidence 998865331 6 899999988652344 789999999999954 11
Q ss_pred ChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 134 APISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 134 ~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
...++..++++++++|+|||.+++.+..
T Consensus 173 ~~~~~~~~l~~~~~~LkpgG~li~~~~~ 200 (265)
T 2i62_A 173 DLPAYRTALRNLGSLLKPGGFLVMVDAL 200 (265)
T ss_dssp SHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred ChHHHHHHHHHHHhhCCCCcEEEEEecC
Confidence 2268999999999999999999998743
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.76 E-value=7.7e-18 Score=135.60 Aligned_cols=109 Identities=19% Similarity=0.362 Sum_probs=96.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+++.. ..+++++|+|+.+++.+++++...++++++++|+.+.+ +. ++||+|++..+++
T Consensus 43 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~d~~~~~-~~-~~fD~v~~~~~l~ 120 (234)
T 3dtn_A 43 TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRGNLKVKYIEADYSKYD-FE-EKYDMVVSALSIH 120 (234)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCSCTTEEEEESCTTTCC-CC-SCEEEEEEESCGG
T ss_pred CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhccCCCEEEEeCchhccC-CC-CCceEEEEeCccc
Confidence 466799999999999999999984 45999999999999999999876668999999999987 45 7899999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+ ++.....++++++++|+|||.+++.+...+
T Consensus 121 ~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 152 (234)
T 3dtn_A 121 HL-----EDEDKKELYKRSYSILKESGIFINADLVHG 152 (234)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred cC-----CHHHHHHHHHHHHHhcCCCcEEEEEEecCC
Confidence 99 656667899999999999999999886644
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-18 Score=140.61 Aligned_cols=116 Identities=21% Similarity=0.358 Sum_probs=99.4
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCe
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~ 116 (252)
..++....+++.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++++... ++++++++|+.+.+.+.+++|
T Consensus 59 ~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~f 137 (285)
T 4htf_A 59 DRVLAEMGPQKLRVLDAGGGEGQTAIKMAERGH-QVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASHLETPV 137 (285)
T ss_dssp HHHHHHTCSSCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGGCSSCE
T ss_pred HHHHHhcCCCCCEEEEeCCcchHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhhcCCCc
Confidence 344554445567999999999999999999865 9999999999999999988543 468999999998864677899
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+|++..+++|+ .++..+++++.++|+|||.+++..+...
T Consensus 138 D~v~~~~~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 177 (285)
T 4htf_A 138 DLILFHAVLEWV-------ADPRSVLQTLWSVLRPGGVLSLMFYNAH 177 (285)
T ss_dssp EEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEEBHH
T ss_pred eEEEECchhhcc-------cCHHHHHHHHHHHcCCCeEEEEEEeCCc
Confidence 999999999999 7889999999999999999999886543
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.3e-18 Score=137.13 Aligned_cols=112 Identities=13% Similarity=0.139 Sum_probs=96.5
Q ss_pred hhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCC-----CCCeeEE
Q 025475 45 KYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-----DESFDAV 119 (252)
Q Consensus 45 ~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~-----~~~~D~v 119 (252)
..+.++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.++++... .+++++++|+.+.+ .. ...||+|
T Consensus 52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~-~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~-~~~~~~~~~~~d~v 128 (245)
T 3ggd_A 52 LLFNPELPLIDFACGNGTQTKFLSQFFP-RVIGLDVSKSALEIAAKENTA-ANISYRLLDGLVPE-QAAQIHSEIGDANI 128 (245)
T ss_dssp TTSCTTSCEEEETCTTSHHHHHHHHHSS-CEEEEESCHHHHHHHHHHSCC-TTEEEEECCTTCHH-HHHHHHHHHCSCEE
T ss_pred hccCCCCeEEEEcCCCCHHHHHHHHhCC-CEEEEECCHHHHHHHHHhCcc-cCceEEECcccccc-cccccccccCccEE
Confidence 3356778999999999999999999876 999999999999999998843 47999999998864 22 1248999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
++..++||+ ++++...++++++++|+|||++++.++..+.
T Consensus 129 ~~~~~~~~~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 168 (245)
T 3ggd_A 129 YMRTGFHHI-----PVEKRELLGQSLRILLGKQGAMYLIELGTGC 168 (245)
T ss_dssp EEESSSTTS-----CGGGHHHHHHHHHHHHTTTCEEEEEEECTTH
T ss_pred EEcchhhcC-----CHHHHHHHHHHHHHHcCCCCEEEEEeCCccc
Confidence 999999999 6669999999999999999999999877554
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.75 E-value=6.8e-18 Score=140.82 Aligned_cols=106 Identities=17% Similarity=0.250 Sum_probs=94.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--C-CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~--~-~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+.++.+|||+|||+|.++..+++. +. +++++|+|+.+++.++++... . ++++++++|+.+++ +++++||+|++.
T Consensus 80 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~ 157 (297)
T 2o57_A 80 LQRQAKGLDLGAGYGGAARFLVRKFGV-SIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-CEDNSYDFIWSQ 157 (297)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-SCTTCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCC-CCCCCEeEEEec
Confidence 357779999999999999999987 54 999999999999999988743 2 47999999999987 788899999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.+++|+ .++..++++++++|+|||.+++.++.
T Consensus 158 ~~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 189 (297)
T 2o57_A 158 DAFLHS-------PDKLKVFQECARVLKPRGVMAITDPM 189 (297)
T ss_dssp SCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhhc-------CCHHHHHHHHHHHcCCCeEEEEEEec
Confidence 999999 67899999999999999999998754
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.75 E-value=3.7e-18 Score=139.75 Aligned_cols=105 Identities=23% Similarity=0.346 Sum_probs=93.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++... .+++.++++|+.+++ +++++||+|++..++
T Consensus 36 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~fD~V~~~~~l 113 (260)
T 1vl5_A 36 KGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIVTCRIAA 113 (260)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEEEEEEESCG
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEecHHhCC-CCCCCEEEEEEhhhh
Confidence 4677999999999999999998864 999999999999999998743 347999999999987 788899999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|+ .++..++++++++|+|||.+++.++.
T Consensus 114 ~~~-------~d~~~~l~~~~r~LkpgG~l~~~~~~ 142 (260)
T 1vl5_A 114 HHF-------PNPASFVSEAYRVLKKGGQLLLVDNS 142 (260)
T ss_dssp GGC-------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred Hhc-------CCHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 999 78899999999999999999997654
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-17 Score=137.49 Aligned_cols=105 Identities=18% Similarity=0.309 Sum_probs=93.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++++.+|||+|||+|.++..+++.+..+++++|+|+.+++.+++++... ++++++++|+.+++ +++++||+|++..
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~i~~~~ 122 (267)
T 3kkz_A 44 LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLP-FRNEELDLIWSEG 122 (267)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-CCTTCEEEEEESS
T ss_pred CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCC-CCCCCEEEEEEcC
Confidence 3577899999999999999999987669999999999999999987543 46999999999987 7788999999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++|+ ++..+++++.++|+|||.+++.+.
T Consensus 123 ~~~~~--------~~~~~l~~~~~~LkpgG~l~~~~~ 151 (267)
T 3kkz_A 123 AIYNI--------GFERGLNEWRKYLKKGGYLAVSEC 151 (267)
T ss_dssp CGGGT--------CHHHHHHHHGGGEEEEEEEEEEEE
T ss_pred Cceec--------CHHHHHHHHHHHcCCCCEEEEEEe
Confidence 99998 367899999999999999999875
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-17 Score=132.25 Aligned_cols=106 Identities=20% Similarity=0.274 Sum_probs=94.3
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.+|||+|||+|.++..+++....+++++|+++.+++.+++++... ++++++++|+.+++ +++++||+|++..+++|
T Consensus 45 ~~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~~~l~~ 123 (219)
T 3dlc_A 45 GTCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIP-IEDNYADLIVSRGSVFF 123 (219)
T ss_dssp EEEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCS-SCTTCEEEEEEESCGGG
T ss_pred CEEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCC-CCcccccEEEECchHhh
Confidence 399999999999999999874349999999999999999997542 37999999999987 78889999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+ .++..++++++++|+|||.+++.+...+.
T Consensus 124 ~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 153 (219)
T 3dlc_A 124 W-------EDVATAFREIYRILKSGGKTYIGGGFGNK 153 (219)
T ss_dssp C-------SCHHHHHHHHHHHEEEEEEEEEEECCSSH
T ss_pred c-------cCHHHHHHHHHHhCCCCCEEEEEeccCcH
Confidence 9 88999999999999999999998755443
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-17 Score=133.48 Aligned_cols=104 Identities=18% Similarity=0.358 Sum_probs=94.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
++.+|||+|||+|.++..+++.+..+++++|+|+.+++.++++... .+++++++|+.+.+ +++++||+|++..+++|+
T Consensus 43 ~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~-~~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~~~ 120 (243)
T 3bkw_A 43 GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGPD-TGITYERADLDKLH-LPQDSFDLAYSSLALHYV 120 (243)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSCS-SSEEEEECCGGGCC-CCTTCEEEEEEESCGGGC
T ss_pred CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhccc-CCceEEEcChhhcc-CCCCCceEEEEecccccc
Confidence 6679999999999999999998755899999999999999998754 36899999999887 777899999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.++..++++++++|+|||.+++....
T Consensus 121 -------~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 121 -------EDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp -------SCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred -------chHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 78899999999999999999998754
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.74 E-value=3.1e-17 Score=131.27 Aligned_cols=121 Identities=28% Similarity=0.483 Sum_probs=102.6
Q ss_pred chhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCC
Q 025475 36 YSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 36 ~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~ 114 (252)
...+...+...++++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.... .+++++++|+.+.+ ++++
T Consensus 25 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~ 102 (227)
T 1ve3_A 25 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS-FEDK 102 (227)
T ss_dssp HHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC-SCTT
T ss_pred HHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEECchhcCC-CCCC
Confidence 3445666777777788999999999999999999876 9999999999999999987533 57999999999877 6778
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+||+|+++.++++. +..+...++++++++|+|||.+++.+...+
T Consensus 103 ~~D~v~~~~~~~~~-----~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 146 (227)
T 1ve3_A 103 TFDYVIFIDSIVHF-----EPLELNQVFKEVRRVLKPSGKFIMYFTDLR 146 (227)
T ss_dssp CEEEEEEESCGGGC-----CHHHHHHHHHHHHHHEEEEEEEEEEEECHH
T ss_pred cEEEEEEcCchHhC-----CHHHHHHHHHHHHHHcCCCcEEEEEecChH
Confidence 99999999995444 338889999999999999999999886543
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-17 Score=131.47 Aligned_cols=110 Identities=22% Similarity=0.369 Sum_probs=96.7
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
..++....+++.+|||+|||+|.++..+ +..+++++|+|+.+++.++++. ++++++++|+.+++ +++++||+|
T Consensus 27 ~~~l~~~~~~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~~~~~fD~v 99 (211)
T 2gs9_A 27 ERALKGLLPPGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA---PEATWVRAWGEALP-FPGESFDVV 99 (211)
T ss_dssp HHHHHTTCCCCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC---TTSEEECCCTTSCC-SCSSCEEEE
T ss_pred HHHHHHhcCCCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcccccCC-CCCCcEEEE
Confidence 4456666667889999999999999887 4448999999999999999987 57899999999887 778899999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++..+++|+ .++.++++++.++|+|||.+++.++...
T Consensus 100 ~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~~ 136 (211)
T 2gs9_A 100 LLFTTLEFV-------EDVERVLLEARRVLRPGGALVVGVLEAL 136 (211)
T ss_dssp EEESCTTTC-------SCHHHHHHHHHHHEEEEEEEEEEEECTT
T ss_pred EEcChhhhc-------CCHHHHHHHHHHHcCCCCEEEEEecCCc
Confidence 999999999 7889999999999999999999987654
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.9e-17 Score=130.86 Aligned_cols=106 Identities=16% Similarity=0.298 Sum_probs=91.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-------CCeEEEccccCCCCCCCCCeeEEE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-------QLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~-------~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
++.+|||+|||+|.++..+++.+ ..+++++|+|+.+++.+++++...+ +++++++|+...+ ...++||+|+
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~ 107 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQD-KRFHGYDAAT 107 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCC-GGGCSCSEEE
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCccccc-ccCCCcCEEe
Confidence 56799999999999999999985 4699999999999999999875322 7999999997665 5667899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+..+++|+ ++++...+++++.++|+|||.+++...
T Consensus 108 ~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~li~~~~ 142 (217)
T 3jwh_A 108 VIEVIEHL-----DLSRLGAFERVLFEFAQPKIVIVTTPN 142 (217)
T ss_dssp EESCGGGC-----CHHHHHHHHHHHHTTTCCSEEEEEEEB
T ss_pred eHHHHHcC-----CHHHHHHHHHHHHHHcCCCEEEEEccC
Confidence 99999999 666779999999999999997766553
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=133.50 Aligned_cols=108 Identities=19% Similarity=0.348 Sum_probs=96.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
+.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++.. .++++++++|+.+++ +++++||+|++..+
T Consensus 19 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~ 96 (239)
T 1xxl_A 19 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITCRYA 96 (239)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEEESC
T ss_pred cCCCCEEEEEccCcCHHHHHHHHhCC-EEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccCC-CCCCcEEEEEECCc
Confidence 45778999999999999999998864 999999999999999988743 347999999999887 77889999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++|+ .++..++++++++|+|||.+++.+...+
T Consensus 97 l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 128 (239)
T 1xxl_A 97 AHHF-------SDVRKAVREVARVLKQDGRFLLVDHYAP 128 (239)
T ss_dssp GGGC-------SCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred hhhc-------cCHHHHHHHHHHHcCCCcEEEEEEcCCC
Confidence 9999 7889999999999999999999876543
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-17 Score=134.21 Aligned_cols=105 Identities=17% Similarity=0.315 Sum_probs=92.9
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++++.+|||+|||+|.++..+++.+..+++++|+|+.+++.+++++... ++++++++|+.+++ +++++||+|++..
T Consensus 44 ~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~ 122 (257)
T 3f4k_A 44 LTDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLP-FQNEELDLIWSEG 122 (257)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCS-SCTTCEEEEEEES
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-CCCCCEEEEEecC
Confidence 4567799999999999999999986459999999999999999987542 24999999998887 7788999999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++|+ ++..+++++.++|+|||.+++.+.
T Consensus 123 ~l~~~--------~~~~~l~~~~~~L~pgG~l~~~~~ 151 (257)
T 3f4k_A 123 AIYNI--------GFERGMNEWSKYLKKGGFIAVSEA 151 (257)
T ss_dssp CSCCC--------CHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred hHhhc--------CHHHHHHHHHHHcCCCcEEEEEEe
Confidence 99997 367899999999999999999874
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=138.68 Aligned_cols=117 Identities=20% Similarity=0.388 Sum_probs=98.1
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEccccCCCCCCCCC
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~~~~~~~~~~ 115 (252)
.++.....++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.+++++... .+++++++|+.+++ + +++
T Consensus 74 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~ 150 (299)
T 3g2m_A 74 EFATRTGPVSGPVLELAAGMGRLTFPFLDLGW-EVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFA-L-DKR 150 (299)
T ss_dssp HHHHHHCCCCSCEEEETCTTTTTHHHHHTTTC-CEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCC-C-SCC
T ss_pred HHHHhhCCCCCcEEEEeccCCHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCC-c-CCC
Confidence 33333334455999999999999999999865 8999999999999999998653 47999999999987 4 678
Q ss_pred eeEEEec-cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 116 FDAVIDK-GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 116 ~D~v~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
||+|++. .+++++ ++++...++++++++|+|||.+++..+..+..
T Consensus 151 fD~v~~~~~~~~~~-----~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 196 (299)
T 3g2m_A 151 FGTVVISSGSINEL-----DEADRRGLYASVREHLEPGGKFLLSLAMSEAA 196 (299)
T ss_dssp EEEEEECHHHHTTS-----CHHHHHHHHHHHHHHEEEEEEEEEEEECCHHH
T ss_pred cCEEEECCcccccC-----CHHHHHHHHHHHHHHcCCCcEEEEEeecCccc
Confidence 9999865 667777 66788999999999999999999998876654
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=137.28 Aligned_cols=116 Identities=29% Similarity=0.497 Sum_probs=100.3
Q ss_pred hhhHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCC
Q 025475 37 SALRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFF 111 (252)
Q Consensus 37 ~~l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~ 111 (252)
..+..++... ++++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.+++++.. .++++++++|+.+.+ +
T Consensus 23 ~~l~~~l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-~ 101 (276)
T 3mgg_A 23 ETLEKLLHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLP-F 101 (276)
T ss_dssp CHHHHHHHTTCCCCTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCC-S
T ss_pred HHHHHHHhhcccCCCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCC-C
Confidence 4455555554 3577899999999999999999885 45999999999999999998753 347999999999987 7
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
++++||+|++..+++|+ .++..+++++.++|+|||.+++.+.
T Consensus 102 ~~~~fD~v~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~ 143 (276)
T 3mgg_A 102 EDSSFDHIFVCFVLEHL-------QSPEEALKSLKKVLKPGGTITVIEG 143 (276)
T ss_dssp CTTCEEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCeeEEEEechhhhc-------CCHHHHHHHHHHHcCCCcEEEEEEc
Confidence 78899999999999999 7788999999999999999999874
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=133.03 Aligned_cols=116 Identities=14% Similarity=0.203 Sum_probs=97.7
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCee
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D 117 (252)
+...+....+++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++....+ +++++++|+.+.+ ++ ++||
T Consensus 27 ~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~~~~~D~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~-~~fD 103 (246)
T 1y8c_A 27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-IN-RKFD 103 (246)
T ss_dssp HHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-CS-CCEE
T ss_pred HHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCCC-cEEEEECCHHHHHHHHHHHhhcCCCeEEEecccccCC-cc-CCce
Confidence 3444444444677999999999999999999865 89999999999999999875433 7899999999887 55 7899
Q ss_pred EEEecc-chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 118 AVIDKG-TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 118 ~v~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|++.. +++|+ +++++...++++++++|+|||.+++....
T Consensus 104 ~v~~~~~~l~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 144 (246)
T 1y8c_A 104 LITCCLDSTNYI----IDSDDLKKYFKAVSNHLKEGGVFIFDINS 144 (246)
T ss_dssp EEEECTTGGGGC----CSHHHHHHHHHHHHTTEEEEEEEEEEEEC
T ss_pred EEEEcCcccccc----CCHHHHHHHHHHHHHhcCCCcEEEEEecC
Confidence 999998 99998 45578899999999999999999986654
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.7e-17 Score=135.23 Aligned_cols=102 Identities=23% Similarity=0.486 Sum_probs=91.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.++.+|||+|||+|.++..+++.+ .+++|+|+|+.|++.++++. ++++++++|+.+++ + +++||+|++..+++|
T Consensus 56 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~gvD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~-~~~fD~v~~~~~l~~ 129 (279)
T 3ccf_A 56 QPGEFILDLGCGTGQLTEKIAQSG-AEVLGTDNAATMIEKARQNY---PHLHFDVADARNFR-V-DKPLDAVFSNAMLHW 129 (279)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHC---TTSCEEECCTTTCC-C-SSCEEEEEEESCGGG
T ss_pred CCCCEEEEecCCCCHHHHHHHhCC-CeEEEEECCHHHHHHHHhhC---CCCEEEECChhhCC-c-CCCcCEEEEcchhhh
Confidence 467799999999999999999965 49999999999999999886 57899999999987 4 578999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+ .++..++++++++|+|||.+++..+..
T Consensus 130 ~-------~d~~~~l~~~~~~LkpgG~l~~~~~~~ 157 (279)
T 3ccf_A 130 V-------KEPEAAIASIHQALKSGGRFVAEFGGK 157 (279)
T ss_dssp C-------SCHHHHHHHHHHHEEEEEEEEEEEECT
T ss_pred C-------cCHHHHHHHHHHhcCCCcEEEEEecCC
Confidence 9 788999999999999999999987654
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-17 Score=134.25 Aligned_cols=104 Identities=21% Similarity=0.319 Sum_probs=93.5
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.+.++.+|||+|||+|.++..+++.+ .+++++|+|+.+++.+++++.. .++++++++|+.+++ +++++||+|++..+
T Consensus 36 ~~~~~~~vLDiG~G~G~~~~~l~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 113 (263)
T 2yqz_A 36 PKGEEPVFLELGVGTGRIALPLIARG-YRYIALDADAAMLEVFRQKIAGVDRKVQVVQADARAIP-LPDESVHGVIVVHL 113 (263)
T ss_dssp CSSSCCEEEEETCTTSTTHHHHHTTT-CEEEEEESCHHHHHHHHHHTTTSCTTEEEEESCTTSCC-SCTTCEEEEEEESC
T ss_pred CCCCCCEEEEeCCcCCHHHHHHHHCC-CEEEEEECCHHHHHHHHHHhhccCCceEEEEcccccCC-CCCCCeeEEEECCc
Confidence 35677899999999999999999886 4899999999999999998732 357999999999887 77889999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
+||+ .+...++++++++|+|||.+++.
T Consensus 114 l~~~-------~~~~~~l~~~~~~L~pgG~l~~~ 140 (263)
T 2yqz_A 114 WHLV-------PDWPKVLAEAIRVLKPGGALLEG 140 (263)
T ss_dssp GGGC-------TTHHHHHHHHHHHEEEEEEEEEE
T ss_pred hhhc-------CCHHHHHHHHHHHCCCCcEEEEE
Confidence 9999 78899999999999999999887
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=135.50 Aligned_cols=105 Identities=22% Similarity=0.243 Sum_probs=92.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++++.+|||+|||+|..+..+++....+++++|+|+.+++.++++.... ++++++++|+.+.+ + +++||+|++..
T Consensus 34 ~~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~V~~~~ 111 (256)
T 1nkv_A 34 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV-A-NEKCDVAACVG 111 (256)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC-C-SSCEEEEEEES
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCC-c-CCCCCEEEECC
Confidence 4577799999999999999999874348999999999999999987532 37999999999987 5 78899999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++|+ .++..++++++++|||||.+++.+.
T Consensus 112 ~~~~~-------~~~~~~l~~~~r~LkpgG~l~~~~~ 141 (256)
T 1nkv_A 112 ATWIA-------GGFAGAEELLAQSLKPGGIMLIGEP 141 (256)
T ss_dssp CGGGT-------SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred ChHhc-------CCHHHHHHHHHHHcCCCeEEEEecC
Confidence 99999 7889999999999999999999764
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.73 E-value=2e-17 Score=130.79 Aligned_cols=111 Identities=27% Similarity=0.393 Sum_probs=95.0
Q ss_pred CCCCCcEEEEcccCcHhH-HHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGNALMS-EDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~-~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.+++.+|||+|||+|..+ ..++..+. +++++|+|+.+++.++++... ..+++++++|+.+.+ +++++||+|++..+
T Consensus 21 ~~~~~~vLDiGcG~G~~~~~~~~~~~~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 98 (209)
T 2p8j_A 21 SNLDKTVLDCGAGGDLPPLSIFVEDGY-KTYGIEISDLQLKKAENFSRENNFKLNISKGDIRKLP-FKDESMSFVYSYGT 98 (209)
T ss_dssp SSSCSEEEEESCCSSSCTHHHHHHTTC-EEEEEECCHHHHHHHHHHHHHHTCCCCEEECCTTSCC-SCTTCEEEEEECSC
T ss_pred cCCCCEEEEECCCCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEECchhhCC-CCCCceeEEEEcCh
Confidence 456789999999999974 45555554 899999999999999988743 247899999999887 77789999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
++|+ +.+++..++++++++|+|||.+++.++..+.
T Consensus 99 l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 133 (209)
T 2p8j_A 99 IFHM-----RKNDVKEAIDEIKRVLKPGGLACINFLTTKD 133 (209)
T ss_dssp GGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEETTS
T ss_pred HHhC-----CHHHHHHHHHHHHHHcCCCcEEEEEEecccc
Confidence 9998 7789999999999999999999998876544
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.73 E-value=3.4e-17 Score=130.55 Aligned_cols=106 Identities=15% Similarity=0.241 Sum_probs=91.0
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-------CCeEEEccccCCCCCCCCCeeEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-------QLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~-------~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.++.+|||+|||+|.++..+++.+ ..+++++|+|+.+++.+++++.... +++++++|+...+ ...++||+|
T Consensus 28 ~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V 106 (219)
T 3jwg_A 28 VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRD-KRFSGYDAA 106 (219)
T ss_dssp TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCC-GGGTTCSEE
T ss_pred cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCcccccc-cccCCCCEE
Confidence 356799999999999999999885 3699999999999999999875322 7899999997766 666889999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++..+++|+ ++++..++++++.++|+|||.++...
T Consensus 107 ~~~~~l~~~-----~~~~~~~~l~~~~~~LkpgG~~i~~~ 141 (219)
T 3jwg_A 107 TVIEVIEHL-----DENRLQAFEKVLFEFTRPQTVIVSTP 141 (219)
T ss_dssp EEESCGGGC-----CHHHHHHHHHHHHTTTCCSEEEEEEE
T ss_pred EEHHHHHhC-----CHHHHHHHHHHHHHhhCCCEEEEEcc
Confidence 999999999 65677899999999999999666544
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=135.49 Aligned_cols=106 Identities=26% Similarity=0.437 Sum_probs=94.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++....+++++|+|+.+++.++++.... ++++++++|+.+++ +++++||+|++..+
T Consensus 60 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 138 (273)
T 3bus_A 60 RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLP-FEDASFDAVWALES 138 (273)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-SCTTCEEEEEEESC
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCC-CCCCCccEEEEech
Confidence 467799999999999999998864459999999999999999987532 36999999999987 77889999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++|+ .+...+++++.++|+|||.+++.++.
T Consensus 139 l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~ 168 (273)
T 3bus_A 139 LHHM-------PDRGRALREMARVLRPGGTVAIADFV 168 (273)
T ss_dssp TTTS-------SCHHHHHHHHHTTEEEEEEEEEEEEE
T ss_pred hhhC-------CCHHHHHHHHHHHcCCCeEEEEEEee
Confidence 9999 77899999999999999999998754
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.4e-17 Score=133.51 Aligned_cols=104 Identities=17% Similarity=0.311 Sum_probs=93.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
++.+|||+|||+|.++..+++.+. +++++|+|+.+++.+++++...+ +++++++|+.+.+ . +++||+|+++.+++|
T Consensus 120 ~~~~vLD~GcG~G~~~~~l~~~g~-~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~-~~~fD~i~~~~~~~~ 196 (286)
T 3m70_A 120 SPCKVLDLGCGQGRNSLYLSLLGY-DVTSWDHNENSIAFLNETKEKENLNISTALYDINAAN-I-QENYDFIVSTVVFMF 196 (286)
T ss_dssp CSCEEEEESCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCGGGCC-C-CSCEEEEEECSSGGG
T ss_pred CCCcEEEECCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHcCCceEEEEecccccc-c-cCCccEEEEccchhh
Confidence 677999999999999999999976 99999999999999999886433 7999999999987 4 778999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+ +++....+++++.++|+|||.+++...
T Consensus 197 ~-----~~~~~~~~l~~~~~~LkpgG~l~i~~~ 224 (286)
T 3m70_A 197 L-----NRERVPSIIKNMKEHTNVGGYNLIVAA 224 (286)
T ss_dssp S-----CGGGHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred C-----CHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9 778889999999999999999777653
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=133.46 Aligned_cols=114 Identities=22% Similarity=0.401 Sum_probs=96.4
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCe
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
..+..++...++++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++... .++++|+.+++ +++++|
T Consensus 42 ~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~----~~~~~d~~~~~-~~~~~f 115 (260)
T 2avn_A 42 RLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGVK----NVVEAKAEDLP-FPSGAF 115 (260)
T ss_dssp HHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTCS----CEEECCTTSCC-SCTTCE
T ss_pred HHHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHcCC-eEEEEeCCHHHHHHHHhhcCC----CEEECcHHHCC-CCCCCE
Confidence 345666777777788999999999999999999865 899999999999999998752 38899999887 778899
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|+|++..+++|+ . .++..+++++.++|+|||.+++..++.
T Consensus 116 D~v~~~~~~~~~-----~-~~~~~~l~~~~~~LkpgG~l~~~~~~~ 155 (260)
T 2avn_A 116 EAVLALGDVLSY-----V-ENKDKAFSEIRRVLVPDGLLIATVDNF 155 (260)
T ss_dssp EEEEECSSHHHH-----C-SCHHHHHHHHHHHEEEEEEEEEEEEBH
T ss_pred EEEEEcchhhhc-----c-ccHHHHHHHHHHHcCCCeEEEEEeCCh
Confidence 999998876665 2 348999999999999999999987653
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.1e-17 Score=133.72 Aligned_cols=104 Identities=20% Similarity=0.306 Sum_probs=92.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC--CCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM--SFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~--~~~~~~~~D~v~~~~~ 124 (252)
++++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++ ++++++|+.+. + +++++||+|++..+
T Consensus 39 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~------~~~~~~d~~~~~~~-~~~~~fD~i~~~~~ 110 (240)
T 3dli_A 39 FKGCRRVLDIGCGRGEFLELCKEEGI-ESIGVDINEDMIKFCEGK------FNVVKSDAIEYLKS-LPDKYLDGVMISHF 110 (240)
T ss_dssp TTTCSCEEEETCTTTHHHHHHHHHTC-CEEEECSCHHHHHHHHTT------SEEECSCHHHHHHT-SCTTCBSEEEEESC
T ss_pred hcCCCeEEEEeCCCCHHHHHHHhCCC-cEEEEECCHHHHHHHHhh------cceeeccHHHHhhh-cCCCCeeEEEECCc
Confidence 45778999999999999999999865 899999999999999876 68899998875 4 67889999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++|+ +.++...++++++++|+|||.+++..+...
T Consensus 111 l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 144 (240)
T 3dli_A 111 VEHL-----DPERLFELLSLCYSKMKYSSYIVIESPNPT 144 (240)
T ss_dssp GGGS-----CGGGHHHHHHHHHHHBCTTCCEEEEEECTT
T ss_pred hhhC-----CcHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 9999 566889999999999999999999886643
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.72 E-value=4.7e-17 Score=131.18 Aligned_cols=137 Identities=23% Similarity=0.382 Sum_probs=107.9
Q ss_pred hhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC
Q 025475 16 ALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI 95 (252)
Q Consensus 16 ~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~ 95 (252)
.++|+..+..... .|......+...+....+++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++.
T Consensus 9 a~~yd~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~~-~v~~~D~s~~~~~~a~~~~--- 82 (239)
T 3bxo_A 9 ADVYDLFYLGRGK--DYAAEASDIADLVRSRTPEASSLLDVACGTGTHLEHFTKEFG-DTAGLELSEDMLTHARKRL--- 82 (239)
T ss_dssp HHHHHHHHHHHTC--CHHHHHHHHHHHHHHHCTTCCEEEEETCTTSHHHHHHHHHHS-EEEEEESCHHHHHHHHHHC---
T ss_pred HHHHHHHhhccHh--hHHHHHHHHHHHHHHhcCCCCeEEEecccCCHHHHHHHHhCC-cEEEEeCCHHHHHHHHHhC---
Confidence 4577776653211 222223345566666667788999999999999999998865 8999999999999999886
Q ss_pred CCCeEEEccccCCCCCCCCCeeEEEe-ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 96 PQLKYLQMDVRDMSFFEDESFDAVID-KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 96 ~~v~~~~~d~~~~~~~~~~~~D~v~~-~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
++++++++|+.+.+ . .++||+|++ ..+++|+ +++++...++++++++|+|||.+++.++..+.
T Consensus 83 ~~~~~~~~d~~~~~-~-~~~~D~v~~~~~~~~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 146 (239)
T 3bxo_A 83 PDATLHQGDMRDFR-L-GRKFSAVVSMFSSVGYL----KTTEELGAAVASFAEHLEPGGVVVVEPWWFPE 146 (239)
T ss_dssp TTCEEEECCTTTCC-C-SSCEEEEEECTTGGGGC----CSHHHHHHHHHHHHHTEEEEEEEEECCCCCTT
T ss_pred CCCEEEECCHHHcc-c-CCCCcEEEEcCchHhhc----CCHHHHHHHHHHHHHhcCCCeEEEEEeccCcc
Confidence 46899999999887 4 678999995 4588887 34578899999999999999999998765543
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.5e-17 Score=137.60 Aligned_cols=115 Identities=16% Similarity=0.282 Sum_probs=96.8
Q ss_pred hhHHHHHhhC-CCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC----CCCCeEEEccccCCCC
Q 025475 38 ALRPFVRKYI-PTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE----IPQLKYLQMDVRDMSF 110 (252)
Q Consensus 38 ~l~~~~~~~~-~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~----~~~v~~~~~d~~~~~~ 110 (252)
.+.+.+.... .++.+|||+|||+|.++..+++. ...+++|+|+|+.+++.+++++.. .++++++++|+.+++
T Consensus 24 ~~~~~l~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~- 102 (299)
T 3g5t_A 24 DFYKMIDEYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFK- 102 (299)
T ss_dssp HHHHHHHHHCCSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCG-
T ss_pred HHHHHHHHHhcCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCC-
Confidence 4555565553 46779999999999999999963 356999999999999999998754 358999999999887
Q ss_pred CCC------CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 111 FED------ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 111 ~~~------~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+.. ++||+|++..++||+ ++..+++++.++|+|||.+++.++.
T Consensus 103 ~~~~~~~~~~~fD~V~~~~~l~~~--------~~~~~l~~~~~~LkpgG~l~i~~~~ 151 (299)
T 3g5t_A 103 FLGADSVDKQKIDMITAVECAHWF--------DFEKFQRSAYANLRKDGTIAIWGYA 151 (299)
T ss_dssp GGCTTTTTSSCEEEEEEESCGGGS--------CHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccccccccCCCeeEEeHhhHHHHh--------CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 555 799999999999987 5788999999999999999986644
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-17 Score=135.01 Aligned_cols=115 Identities=18% Similarity=0.318 Sum_probs=98.0
Q ss_pred HhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCC-CCCCeeEE
Q 025475 44 RKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFF-EDESFDAV 119 (252)
Q Consensus 44 ~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~-~~~~~D~v 119 (252)
...++++.+|||+|||+|.++..++..+..+++++|+|+.+++.+++++... .+++++++|+.+.+ + .+++||+|
T Consensus 59 ~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~fD~v 137 (298)
T 1ri5_A 59 RLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRH-MDLGKEFDVI 137 (298)
T ss_dssp HHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSC-CCCSSCEEEE
T ss_pred HHhCCCCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccc-cCCCCCcCEE
Confidence 3446788899999999999999998887669999999999999999988653 25899999999887 5 57889999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
++..++||+ ..+..+...+++++.++|+|||.+++..+..
T Consensus 138 ~~~~~l~~~---~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 177 (298)
T 1ri5_A 138 SSQFSFHYA---FSTSESLDIAQRNIARHLRPGGYFIMTVPSR 177 (298)
T ss_dssp EEESCGGGG---GSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EECchhhhh---cCCHHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 999999882 0144889999999999999999999988664
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=136.34 Aligned_cols=111 Identities=17% Similarity=0.298 Sum_probs=95.7
Q ss_pred hhHHHHHhhC--CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCC
Q 025475 38 ALRPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 38 ~l~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~ 115 (252)
.+.+.+...+ .++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++.+. +++++++|+.+++ +++++
T Consensus 21 ~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~~~~a~~~~----~~~~~~~d~~~~~-~~~~~ 94 (261)
T 3ege_A 21 RIVNAIINLLNLPKGSVIADIGAGTGGYSVALANQGL-FVYAVEPSIVMRQQAVVHP----QVEWFTGYAENLA-LPDKS 94 (261)
T ss_dssp HHHHHHHHHHCCCTTCEEEEETCTTSHHHHHHHTTTC-EEEEECSCHHHHHSSCCCT----TEEEECCCTTSCC-SCTTC
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCcccHHHHHHHhCCC-EEEEEeCCHHHHHHHHhcc----CCEEEECchhhCC-CCCCC
Confidence 3444444443 5677999999999999999998754 9999999999998876654 7899999999987 78889
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
||+|++..+++|+ .++..++++++++|| ||.+++.++..
T Consensus 95 fD~v~~~~~l~~~-------~~~~~~l~~~~~~Lk-gG~~~~~~~~~ 133 (261)
T 3ege_A 95 VDGVISILAIHHF-------SHLEKSFQEMQRIIR-DGTIVLLTFDI 133 (261)
T ss_dssp BSEEEEESCGGGC-------SSHHHHHHHHHHHBC-SSCEEEEEECG
T ss_pred EeEEEEcchHhhc-------cCHHHHHHHHHHHhC-CcEEEEEEcCC
Confidence 9999999999999 899999999999999 99988888654
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.2e-16 Score=130.48 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=85.9
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC----CCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----FEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~----~~~~~~D~v~~~ 122 (252)
+.++.+|||+|||+|.++..+++.+. +|+++|+|+.|++.++++.... +++.++.+.+. ..+++||+|+++
T Consensus 43 l~~g~~VLDlGcGtG~~a~~La~~g~-~V~gvD~S~~ml~~Ar~~~~~~----~v~~~~~~~~~~~~~~~~~~fD~Vv~~ 117 (261)
T 3iv6_A 43 IVPGSTVAVIGASTRFLIEKALERGA-SVTVFDFSQRMCDDLAEALADR----CVTIDLLDITAEIPKELAGHFDFVLND 117 (261)
T ss_dssp CCTTCEEEEECTTCHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTSSS----CCEEEECCTTSCCCGGGTTCCSEEEEE
T ss_pred CCCcCEEEEEeCcchHHHHHHHhcCC-EEEEEECCHHHHHHHHHHHHhc----cceeeeeecccccccccCCCccEEEEh
Confidence 45677999999999999999999875 8999999999999999998543 34455544431 125689999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+++|+ ..++...+++++.++| |||.++++..
T Consensus 118 ~~l~~~-----~~~~~~~~l~~l~~lL-PGG~l~lS~~ 149 (261)
T 3iv6_A 118 RLINRF-----TTEEARRACLGMLSLV-GSGTVRASVK 149 (261)
T ss_dssp SCGGGS-----CHHHHHHHHHHHHHHH-TTSEEEEEEE
T ss_pred hhhHhC-----CHHHHHHHHHHHHHhC-cCcEEEEEec
Confidence 999998 7788899999999999 9999998764
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=6e-17 Score=125.74 Aligned_cols=121 Identities=15% Similarity=0.177 Sum_probs=92.2
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCee
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D 117 (252)
..++...++++.+|||+|||+|.++..+++. ..+|+++|+|+.+++.|++++.. .+++++++.+..++..+.+++||
T Consensus 13 ~~~l~~~~~~~~~vLDiGcG~G~~~~~la~~-~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~~~~~fD 91 (185)
T 3mti_A 13 HDFLAEVLDDESIVVDATMGNGNDTAFLAGL-SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHYVREPIR 91 (185)
T ss_dssp HHHHHTTCCTTCEEEESCCTTSHHHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGTCCSCEE
T ss_pred HHHHHHhCCCCCEEEEEcCCCCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhhccCCcC
Confidence 4456666788899999999999999999998 45999999999999999998853 35789999888776434567899
Q ss_pred EEEeccc-hhhhcC-CCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 118 AVIDKGT-LDSLMC-GTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 118 ~v~~~~~-l~~~~~-~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|+++.. +++... -...+.....+++++.++|+|||.+++..+.
T Consensus 92 ~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~ 137 (185)
T 3mti_A 92 AAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIMIYY 137 (185)
T ss_dssp EEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEEEC-
T ss_pred EEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 9998732 221000 0012356778899999999999999998764
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.3e-16 Score=128.77 Aligned_cols=103 Identities=14% Similarity=0.199 Sum_probs=91.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++. ++++++++|+.+++ ++++||+|+++.+++
T Consensus 32 ~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~~---~~~~~~~~d~~~~~--~~~~fD~v~~~~~l~ 106 (259)
T 2p35_A 32 ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADRL---PNTNFGKADLATWK--PAQKADLLYANAVFQ 106 (259)
T ss_dssp SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHHS---TTSEEEECCTTTCC--CSSCEEEEEEESCGG
T ss_pred CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---CCcEEEECChhhcC--ccCCcCEEEEeCchh
Confidence 466799999999999999999872 348999999999999999883 57899999999876 567899999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|+ .++..++++++++|+|||.+++.++..
T Consensus 107 ~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 135 (259)
T 2p35_A 107 WV-------PDHLAVLSQLMDQLESGGVLAVQMPDN 135 (259)
T ss_dssp GS-------TTHHHHHHHHGGGEEEEEEEEEEEECC
T ss_pred hC-------CCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 99 889999999999999999999988643
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.1e-17 Score=135.78 Aligned_cols=112 Identities=19% Similarity=0.298 Sum_probs=90.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCC--CCCCCeeEEE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSF--FEDESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~--~~~~~~D~v~ 120 (252)
++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++... ..++.+..+|+.+++. +++++||+|+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~ 135 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVI 135 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEEE
Confidence 567999999999999999999976 999999999999999887521 1367889999877531 3567899999
Q ss_pred ec-cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 121 DK-GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 121 ~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+. .+++|+.-...+.+++.+++++++++|+|||.+++...+
T Consensus 136 ~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 177 (293)
T 3thr_A 136 CLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 177 (293)
T ss_dssp ECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred EcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 98 899999000001255999999999999999999998765
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=133.00 Aligned_cols=106 Identities=16% Similarity=0.291 Sum_probs=94.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||+|.++..+++.. ..+++++|+|+.+++.+++++...+ +++++++|+.+++ + +++||+|++..
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD~v~~~~ 97 (284)
T 3gu3_A 20 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-L-NDKYDIAICHA 97 (284)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-C-SSCEEEEEEES
T ss_pred cCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCCceEEEEcchhhcC-c-CCCeeEEEECC
Confidence 3567799999999999999999872 3589999999999999999986544 7999999999987 4 46899999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+++|+ .+...++++++++|+|||.+++.++.
T Consensus 98 ~l~~~-------~~~~~~l~~~~~~LkpgG~l~~~~~~ 128 (284)
T 3gu3_A 98 FLLHM-------TTPETMLQKMIHSVKKGGKIICFEPH 128 (284)
T ss_dssp CGGGC-------SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcC-------CCHHHHHHHHHHHcCCCCEEEEEecc
Confidence 99999 78899999999999999999998865
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=8.8e-17 Score=135.16 Aligned_cols=104 Identities=19% Similarity=0.280 Sum_probs=93.0
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.++.+|||+|||+|.++..+++. +. +++++|+++.+++.++++.... ++++++++|+.+++ +++++||+|++..
T Consensus 116 ~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~V~~~~ 193 (312)
T 3vc1_A 116 GPDDTLVDAGCGRGGSMVMAHRRFGS-RVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTP-FDKGAVTASWNNE 193 (312)
T ss_dssp CTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-CCTTCEEEEEEES
T ss_pred CCCCEEEEecCCCCHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCC-CCCCCEeEEEECC
Confidence 46779999999999999999987 54 8999999999999999987543 37999999999987 7788999999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+++|+ . +..+++++.++|+|||.+++.++.
T Consensus 194 ~l~~~-------~-~~~~l~~~~~~LkpgG~l~~~~~~ 223 (312)
T 3vc1_A 194 STMYV-------D-LHDLFSEHSRFLKVGGRYVTITGC 223 (312)
T ss_dssp CGGGS-------C-HHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhC-------C-HHHHHHHHHHHcCCCcEEEEEEcc
Confidence 99998 3 899999999999999999998753
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-17 Score=124.78 Aligned_cols=101 Identities=21% Similarity=0.354 Sum_probs=90.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
..++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++ .+++++.++| .+ +++++||+|++..+++
T Consensus 15 ~~~~~~vLDiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~v~~~~~d---~~-~~~~~~D~v~~~~~l~ 86 (170)
T 3i9f_A 15 EGKKGVIVDYGCGNGFYCKYLLEFAT-KLYCIDINVIALKEVKEK---FDSVITLSDP---KE-IPDNSVDFILFANSFH 86 (170)
T ss_dssp SSCCEEEEEETCTTCTTHHHHHTTEE-EEEEECSCHHHHHHHHHH---CTTSEEESSG---GG-SCTTCEEEEEEESCST
T ss_pred cCCCCeEEEECCCCCHHHHHHHhhcC-eEEEEeCCHHHHHHHHHh---CCCcEEEeCC---CC-CCCCceEEEEEccchh
Confidence 45677999999999999999999865 999999999999999998 3578999999 44 6678999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|+ .++..+++++.++|+|||.+++.++..
T Consensus 87 ~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 115 (170)
T 3i9f_A 87 DM-------DDKQHVISEVKRILKDDGRVIIIDWRK 115 (170)
T ss_dssp TC-------SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred cc-------cCHHHHHHHHHHhcCCCCEEEEEEcCc
Confidence 99 788999999999999999999988654
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-17 Score=134.42 Aligned_cols=109 Identities=22% Similarity=0.293 Sum_probs=82.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-------------------------------
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP------------------------------- 96 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~------------------------------- 96 (252)
.++.+|||+|||+|.....++..+..+|+|+|+|+.|++.|+++++..+
T Consensus 70 ~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 149 (289)
T 2g72_A 70 VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRA 149 (289)
T ss_dssp SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred CCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcCcccchhhhHHHHHh
Confidence 3567999999999995554444334499999999999999988654211
Q ss_pred -CCeEEEccccC-CC----CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 97 -QLKYLQMDVRD-MS----FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 97 -~v~~~~~d~~~-~~----~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.++++++|+.+ .+ .+++++||+|+++.+++|+ .++.+++.+++++++++|||||.+++..
T Consensus 150 ~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~---~~~~~~~~~~l~~~~r~LkpGG~l~~~~ 215 (289)
T 2g72_A 150 RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAV---SPDLASFQRALDHITTLLRPGGHLLLIG 215 (289)
T ss_dssp HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHH---CSSHHHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhh---cCCHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 13566778887 33 1334679999999999994 1112689999999999999999999975
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.70 E-value=9.1e-17 Score=134.64 Aligned_cols=117 Identities=17% Similarity=0.161 Sum_probs=97.2
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHH--HcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCC
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMV--KDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~--~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~ 115 (252)
..+...++++.+|||+|||+|..+..++ .....+++++|+|+.+++.+++++...+ +++++++|+.+.+ ++ ++
T Consensus 110 ~~l~~~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~-~~ 187 (305)
T 3ocj_A 110 RALQRHLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLD-TR-EG 187 (305)
T ss_dssp HHHHHHCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCC-CC-SC
T ss_pred HHHHhhCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCC-cc-CC
Confidence 4445557888899999999999999985 3335599999999999999999986532 4899999999987 55 89
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
||+|+++.+++|+ +++.....++++++++|+|||.+++.++..+
T Consensus 188 fD~v~~~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~ 231 (305)
T 3ocj_A 188 YDLLTSNGLNIYE----PDDARVTELYRRFWQALKPGGALVTSFLTPP 231 (305)
T ss_dssp EEEEECCSSGGGC----CCHHHHHHHHHHHHHHEEEEEEEEEECCCCC
T ss_pred eEEEEECChhhhc----CCHHHHHHHHHHHHHhcCCCeEEEEEecCCC
Confidence 9999999999998 3344445689999999999999999886654
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.70 E-value=3.9e-17 Score=136.66 Aligned_cols=110 Identities=19% Similarity=0.279 Sum_probs=85.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--------CCeEEEcccc------CCC-CCCC
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP--------QLKYLQMDVR------DMS-FFED 113 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~--------~v~~~~~d~~------~~~-~~~~ 113 (252)
++.+|||+|||+|..+..++..+..+|+|+|+|+.|++.|+++....+ ++++.+.|+. +++ .+++
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~~ 127 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFYF 127 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCCS
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhccccC
Confidence 467999999999987776666655589999999999999999875322 1467788772 221 1456
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
++||+|+|..++||++ +.++..+++++++++|||||++++.+++.
T Consensus 128 ~~FD~V~~~~~lhy~~----~~~~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 128 GKFNIIDWQFAIHYSF----HPRHYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp SCEEEEEEESCGGGTC----STTTHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred CCeeEEEECchHHHhC----CHHHHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 7999999999998751 22356899999999999999999988653
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.8e-16 Score=126.89 Aligned_cols=116 Identities=19% Similarity=0.357 Sum_probs=98.2
Q ss_pred hhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCe
Q 025475 38 ALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 38 ~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~ 116 (252)
...+.+...++++.+|||+|||+|.++..+++. .+++++|+|+.+++.++++.... .+++++++|+.+.+ .+ ++|
T Consensus 22 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~-~~-~~f 97 (243)
T 3d2l_A 22 EWVAWVLEQVEPGKRIADIGCGTGTATLLLADH--YEVTGVDLSEEMLEIAQEKAMETNRHVDFWVQDMRELE-LP-EPV 97 (243)
T ss_dssp HHHHHHHHHSCTTCEEEEESCTTCHHHHHHTTT--SEEEEEESCHHHHHHHHHHHHHTTCCCEEEECCGGGCC-CS-SCE
T ss_pred HHHHHHHHHcCCCCeEEEecCCCCHHHHHHhhC--CeEEEEECCHHHHHHHHHhhhhcCCceEEEEcChhhcC-CC-CCc
Confidence 355566677788889999999999999999887 59999999999999999987532 47899999999886 44 789
Q ss_pred eEEEecc-chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 117 DAVIDKG-TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 117 D~v~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+|++.. +++|+ .+.++...+++++.++|+|||.+++....
T Consensus 98 D~v~~~~~~~~~~----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 139 (243)
T 3d2l_A 98 DAITILCDSLNYL----QTEADVKQTFDSAARLLTDGGKLLFDVHS 139 (243)
T ss_dssp EEEEECTTGGGGC----CSHHHHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred CEEEEeCCchhhc----CCHHHHHHHHHHHHHhcCCCeEEEEEcCC
Confidence 9999986 88887 45578889999999999999999886543
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=6.2e-17 Score=130.70 Aligned_cols=109 Identities=19% Similarity=0.243 Sum_probs=89.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCC--CCCCCCCeeEEEe-c
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDM--SFFEDESFDAVID-K 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~--~~~~~~~~D~v~~-~ 122 (252)
..++.+|||+|||+|.++..+++.+..+++++|+|+.|++.|+++.... .+++++++|+.+. + +++++||+|++ .
T Consensus 58 ~~~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~-~~~~~fD~V~~d~ 136 (236)
T 1zx0_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPT-LPDGHFDGILYDT 136 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGG-SCTTCEEEEEECC
T ss_pred CCCCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhcc-cCCCceEEEEECC
Confidence 4567799999999999999998876558999999999999999988543 4689999999887 5 77889999999 4
Q ss_pred cch--hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 123 GTL--DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 123 ~~l--~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..+ +.. ...++..++++++++|||||++++.++.
T Consensus 137 ~~~~~~~~-----~~~~~~~~l~~~~r~LkpgG~l~~~~~~ 172 (236)
T 1zx0_A 137 YPLSEETW-----HTHQFNFIKNHAFRLLKPGGVLTYCNLT 172 (236)
T ss_dssp CCCBGGGT-----TTHHHHHHHHTHHHHEEEEEEEEECCHH
T ss_pred cccchhhh-----hhhhHHHHHHHHHHhcCCCeEEEEEecC
Confidence 443 222 2356678899999999999999987643
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.69 E-value=3.3e-16 Score=127.37 Aligned_cols=135 Identities=22% Similarity=0.396 Sum_probs=100.5
Q ss_pred hhhHHHHhccCCCceeeeccchhhHHHHHhhC-CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 16 ALYWNARYVQEGGSFDWYQRYSALRPFVRKYI-PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 16 ~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
.+||+..|...... +.....-+..++.... +++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++...
T Consensus 9 a~~yd~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~-~v~gvD~s~~~l~~a~~~~~~ 85 (252)
T 1wzn_A 9 AEYYDTIYRRRIER--VKAEIDFVEEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKE 85 (252)
T ss_dssp GGGHHHHTHHHHHT--HHHHHHHHHHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcchhh--hHHHHHHHHHHHHHhcccCCCEEEEeCCCCCHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHh
Confidence 56788766532110 0011122333444332 4567999999999999999999875 899999999999999998754
Q ss_pred C-CCCeEEEccccCCCCCCCCCeeEEEecc-chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 95 I-PQLKYLQMDVRDMSFFEDESFDAVIDKG-TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 95 ~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~-~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. .+++++++|+.+.+ .+ ++||+|++.. .++++ +.++...++++++++|+|||.+++...
T Consensus 86 ~~~~v~~~~~d~~~~~-~~-~~fD~v~~~~~~~~~~-----~~~~~~~~l~~~~~~L~pgG~li~~~~ 146 (252)
T 1wzn_A 86 RNLKIEFLQGDVLEIA-FK-NEFDAVTMFFSTIMYF-----DEEDLRKLFSKVAEALKPGGVFITDFP 146 (252)
T ss_dssp TTCCCEEEESCGGGCC-CC-SCEEEEEECSSGGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cCCceEEEECChhhcc-cC-CCccEEEEcCCchhcC-----CHHHHHHHHHHHHHHcCCCeEEEEecc
Confidence 3 37999999999876 43 6899999874 45555 557889999999999999999987553
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=131.61 Aligned_cols=111 Identities=15% Similarity=0.274 Sum_probs=93.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
++++.+|||+|||+|.++..+++. + .+++++|+|+.+++.+++++...+ +++++++|+.++ +++||+|++.
T Consensus 70 ~~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~----~~~fD~v~~~ 144 (302)
T 3hem_A 70 LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF----DEPVDRIVSL 144 (302)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC----CCCCSEEEEE
T ss_pred CCCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc----CCCccEEEEc
Confidence 457779999999999999999988 6 589999999999999999985432 789999999765 5789999999
Q ss_pred cchhhhcCCCC----ChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 123 GTLDSLMCGTN----APISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 123 ~~l~~~~~~~~----~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
.+++|+ ..+ +.++...+++++.++|+|||.+++.++..+.
T Consensus 145 ~~~~~~--~d~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~ 188 (302)
T 3hem_A 145 GAFEHF--ADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIPD 188 (302)
T ss_dssp SCGGGT--TCCSSCCCTTHHHHHHHHHHHSSCTTCEEEEEEEECCC
T ss_pred chHHhc--CccccccchhHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence 999998 001 2256689999999999999999998876543
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=138.10 Aligned_cols=106 Identities=18% Similarity=0.268 Sum_probs=93.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC----------CCCCeEEEccccCC------C
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE----------IPQLKYLQMDVRDM------S 109 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~----------~~~v~~~~~d~~~~------~ 109 (252)
.++.+|||+|||+|.++..+++. ...+|+++|+|+.+++.+++++.. .++++++++|+.++ +
T Consensus 82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~ 161 (383)
T 4fsd_A 82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG 161 (383)
T ss_dssp GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence 46779999999999999999886 245999999999999999998642 15899999999986 5
Q ss_pred CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 110 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 110 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+++++||+|+++.+++|+ .++..++++++++|||||.+++.++.
T Consensus 162 -~~~~~fD~V~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~~ 205 (383)
T 4fsd_A 162 -VPDSSVDIVISNCVCNLS-------TNKLALFKEIHRVLRDGGELYFSDVY 205 (383)
T ss_dssp -CCTTCEEEEEEESCGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -CCCCCEEEEEEccchhcC-------CCHHHHHHHHHHHcCCCCEEEEEEec
Confidence 778899999999999999 78899999999999999999998743
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-16 Score=132.79 Aligned_cols=111 Identities=18% Similarity=0.228 Sum_probs=88.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-------------------------------
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI------------------------------- 95 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~------------------------------- 95 (252)
.++.+|||+|||+|.++..++.. +..+|+|+|+++.+++.|++++...
T Consensus 45 ~~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (292)
T 3g07_A 45 FRGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRS 124 (292)
T ss_dssp TTTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC----------------------------------
T ss_pred cCCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhccccccccccccccccccccccccccc
Confidence 35679999999999999999987 3559999999999999999986421
Q ss_pred -----------------------------CCCeEEEccccCCC----CCCCCCeeEEEeccchhhhcCCCCChhhHHHHH
Q 025475 96 -----------------------------PQLKYLQMDVRDMS----FFEDESFDAVIDKGTLDSLMCGTNAPISASQML 142 (252)
Q Consensus 96 -----------------------------~~v~~~~~d~~~~~----~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l 142 (252)
.+++++++|+.... .+..++||+|++..+++|+ +-..+++.+.+++
T Consensus 125 ~~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~i-hl~~~~~~~~~~l 203 (292)
T 3g07_A 125 CFPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWV-HLNWGDEGLKRMF 203 (292)
T ss_dssp -----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHH-HHHHHHHHHHHHH
T ss_pred cccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHh-hhcCCHHHHHHHH
Confidence 37899999987543 1356789999999999776 0000123889999
Q ss_pred HHHHHcccCCcEEEEEE
Q 025475 143 GEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 143 ~~~~~~L~~gG~l~i~~ 159 (252)
++++++|+|||+|++..
T Consensus 204 ~~~~~~LkpGG~lil~~ 220 (292)
T 3g07_A 204 RRIYRHLRPGGILVLEP 220 (292)
T ss_dssp HHHHHHEEEEEEEEEEC
T ss_pred HHHHHHhCCCcEEEEec
Confidence 99999999999998864
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.7e-16 Score=129.62 Aligned_cols=107 Identities=17% Similarity=0.278 Sum_probs=92.9
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
++++.+|||+|||+|.++..+++. +. +++++|+|+.+++.+++++... ++++++++|+.+++ ++||+|++.
T Consensus 62 ~~~~~~vLDiGcG~G~~~~~l~~~~~~-~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~----~~fD~v~~~ 136 (287)
T 1kpg_A 62 LQPGMTLLDVGCGWGATMMRAVEKYDV-NVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----EPVDRIVSI 136 (287)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC----CCCSEEEEE
T ss_pred CCCcCEEEEECCcccHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhhCC----CCeeEEEEe
Confidence 356779999999999999999854 55 9999999999999999987542 37899999997653 689999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.+++|+ +++++..++++++++|+|||.+++.++..+
T Consensus 137 ~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 172 (287)
T 1kpg_A 137 GAFEHF-----GHERYDAFFSLAHRLLPADGVMLLHTITGL 172 (287)
T ss_dssp SCGGGT-----CTTTHHHHHHHHHHHSCTTCEEEEEEEEEC
T ss_pred Cchhhc-----ChHHHHHHHHHHHHhcCCCCEEEEEEecCC
Confidence 999999 667899999999999999999999886543
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-16 Score=122.80 Aligned_cols=108 Identities=10% Similarity=0.120 Sum_probs=91.1
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC-CCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF-FEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~-~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..++..+..+++++|+|+.+++.+++++.. .++++++++|+.+... +++++||+|+++.+
T Consensus 43 ~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~i~~~~p 122 (189)
T 3p9n_A 43 LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGTTSPVDLVLADPP 122 (189)
T ss_dssp CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCCSSCCSEEEECCC
T ss_pred CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhccCCCccEEEECCC
Confidence 46779999999999999988888776899999999999999998854 2479999999987641 34678999999988
Q ss_pred hhhhcCCCCChhhHHHHHHHHHH--cccCCcEEEEEEcC
Q 025475 125 LDSLMCGTNAPISASQMLGEVSR--LLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~l~i~~~~ 161 (252)
+++. .++..+++..+.+ +|+|||.+++....
T Consensus 123 ~~~~------~~~~~~~l~~~~~~~~L~pgG~l~~~~~~ 155 (189)
T 3p9n_A 123 YNVD------SADVDAILAALGTNGWTREGTVAVVERAT 155 (189)
T ss_dssp TTSC------HHHHHHHHHHHHHSSSCCTTCEEEEEEET
T ss_pred CCcc------hhhHHHHHHHHHhcCccCCCeEEEEEecC
Confidence 7762 2678899999999 99999999997744
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.1e-16 Score=126.13 Aligned_cols=103 Identities=18% Similarity=0.281 Sum_probs=88.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC---CCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM---SFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~---~~~~~~~~D~v~~~~~l 125 (252)
++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++ .++.+.+.|+.++ +.....+||+|++..++
T Consensus 52 ~~~~vLdiG~G~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~----~~~~~~~~~~~~~~~~~~~~~~~fD~v~~~~~l 126 (227)
T 3e8s_A 52 QPERVLDLGCGEGWLLRALADRGI-EAVGVDGDRTLVDAARAA----GAGEVHLASYAQLAEAKVPVGKDYDLICANFAL 126 (227)
T ss_dssp CCSEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHT----CSSCEEECCHHHHHTTCSCCCCCEEEEEEESCC
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCC-EEEEEcCCHHHHHHHHHh----cccccchhhHHhhcccccccCCCccEEEECchh
Confidence 457999999999999999999865 899999999999999988 4678888888776 31334569999999998
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+ . .++..++++++++|+|||.+++.++....
T Consensus 127 ~-~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 157 (227)
T 3e8s_A 127 L-H-------QDIIELLSAMRTLLVPGGALVIQTLHPWS 157 (227)
T ss_dssp C-S-------SCCHHHHHHHHHTEEEEEEEEEEECCTTT
T ss_pred h-h-------hhHHHHHHHHHHHhCCCeEEEEEecCccc
Confidence 8 6 67889999999999999999999876533
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-16 Score=128.85 Aligned_cols=106 Identities=19% Similarity=0.213 Sum_probs=87.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCC-CCCCCCeeEEEec--
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMS-FFEDESFDAVIDK-- 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~-~~~~~~~D~v~~~-- 122 (252)
.+++.+|||||||+|..+..+++....++++||+|+.+++.|+++....+ +++++.+|..+.. .+++++||.|+..
T Consensus 58 ~~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~FD~i~~D~~ 137 (236)
T 3orh_A 58 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 137 (236)
T ss_dssp TTTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred ccCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccccccCCceEEEeee
Confidence 45677999999999999999988765589999999999999999986543 6888888876642 2677889999853
Q ss_pred ---cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 ---GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ---~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..++|+ .++..++++++|+|||||++++.+
T Consensus 138 ~~~~~~~~~-------~~~~~~~~e~~rvLkPGG~l~f~~ 170 (236)
T 3orh_A 138 PLSEETWHT-------HQFNFIKNHAFRLLKPGGVLTYCN 170 (236)
T ss_dssp CCBGGGTTT-------HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ecccchhhh-------cchhhhhhhhhheeCCCCEEEEEe
Confidence 345556 889999999999999999997644
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.67 E-value=4e-16 Score=124.46 Aligned_cols=104 Identities=19% Similarity=0.298 Sum_probs=90.7
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
...+....+ +.+|||+|||+|.++..++.. +++|+++.+++.++.+ +++++++|+.+.+ +++++||+|
T Consensus 39 ~~~l~~~~~-~~~vLDiG~G~G~~~~~l~~~-----~~vD~s~~~~~~a~~~-----~~~~~~~d~~~~~-~~~~~fD~v 106 (219)
T 1vlm_A 39 LQAVKCLLP-EGRGVEIGVGTGRFAVPLKIK-----IGVEPSERMAEIARKR-----GVFVLKGTAENLP-LKDESFDFA 106 (219)
T ss_dssp HHHHHHHCC-SSCEEEETCTTSTTHHHHTCC-----EEEESCHHHHHHHHHT-----TCEEEECBTTBCC-SCTTCEEEE
T ss_pred HHHHHHhCC-CCcEEEeCCCCCHHHHHHHHH-----hccCCCHHHHHHHHhc-----CCEEEEcccccCC-CCCCCeeEE
Confidence 345555555 779999999999999988653 9999999999999987 5799999998887 777899999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
++..+++|+ .++..+++++.++|+|||.+++.....
T Consensus 107 ~~~~~l~~~-------~~~~~~l~~~~~~L~pgG~l~i~~~~~ 142 (219)
T 1vlm_A 107 LMVTTICFV-------DDPERALKEAYRILKKGGYLIVGIVDR 142 (219)
T ss_dssp EEESCGGGS-------SCHHHHHHHHHHHEEEEEEEEEEEECS
T ss_pred EEcchHhhc-------cCHHHHHHHHHHHcCCCcEEEEEEeCC
Confidence 999999999 788999999999999999999988654
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-16 Score=130.04 Aligned_cols=108 Identities=11% Similarity=0.198 Sum_probs=94.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+.++.+|||+|||+|.++..+++. +. +++++|+|+.+++.++++.... ++++++++|+.+++ ++||+|++.
T Consensus 88 ~~~~~~vLDiGcG~G~~~~~la~~~~~-~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~----~~fD~v~~~ 162 (318)
T 2fk8_A 88 LKPGMTLLDIGCGWGTTMRRAVERFDV-NVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDFA----EPVDRIVSI 162 (318)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCC-EEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGCC----CCCSEEEEE
T ss_pred CCCcCEEEEEcccchHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHCC----CCcCEEEEe
Confidence 346779999999999999999987 65 9999999999999999987543 36899999987764 689999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
.+++|+ +.+++..+++++.++|+|||.+++.++..+.
T Consensus 163 ~~l~~~-----~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~ 199 (318)
T 2fk8_A 163 EAFEHF-----GHENYDDFFKRCFNIMPADGRMTVQSSVSYH 199 (318)
T ss_dssp SCGGGT-----CGGGHHHHHHHHHHHSCTTCEEEEEEEECCC
T ss_pred ChHHhc-----CHHHHHHHHHHHHHhcCCCcEEEEEEeccCC
Confidence 999999 7788999999999999999999998876443
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.66 E-value=8.9e-16 Score=123.20 Aligned_cols=121 Identities=14% Similarity=0.171 Sum_probs=93.9
Q ss_pred HHhhCCCCCcEEEEccc-CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEE
Q 025475 43 VRKYIPTSSRVLMVGCG-NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 43 ~~~~~~~~~~vLD~G~G-~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
+...++++.+|||+||| +|.++..++.....+++++|+++.+++.+++++...+ +++++++|+.....+++++||+|+
T Consensus 49 ~~~~~~~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~v~~~~~d~~~~~~~~~~~fD~I~ 128 (230)
T 3evz_A 49 LKTFLRGGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERNNSNVRLVKSNGGIIKGVVEGTFDVIF 128 (230)
T ss_dssp HHTTCCSSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHTTCCCEEEECSSCSSTTTCCSCEEEEE
T ss_pred hHhhcCCCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEeCCchhhhhcccCceeEEE
Confidence 45556788899999999 9999999998833499999999999999999885433 799999998655435668999999
Q ss_pred eccchhhhcC------------CCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 121 DKGTLDSLMC------------GTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 121 ~~~~l~~~~~------------~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++.++++... +.........+++++.++|+|||.+++.....+
T Consensus 129 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~ 183 (230)
T 3evz_A 129 SAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPGGKVALYLPDKE 183 (230)
T ss_dssp ECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEEEEEEEEEESCH
T ss_pred ECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCCeEEEEEecccH
Confidence 9988765410 001123358899999999999999999775544
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=128.49 Aligned_cols=120 Identities=23% Similarity=0.253 Sum_probs=95.1
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---------CCCCeEEEccccCCC--
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---------IPQLKYLQMDVRDMS-- 109 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---------~~~v~~~~~d~~~~~-- 109 (252)
+.+....+++.+|||+|||+|.++..+++.+..+++++|+|+.+++.++++... ..+++++++|+.+.+
T Consensus 26 ~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~ 105 (313)
T 3bgv_A 26 EKVRQKKKRDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLI 105 (313)
T ss_dssp HHHHHTC--CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCST
T ss_pred HHhhhccCCCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchh
Confidence 334444457789999999999999999987656999999999999999998742 236899999998864
Q ss_pred -CC--CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 110 -FF--EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 110 -~~--~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.+ ++++||+|+++.++||+ ..+.++...++++++++|+|||.+++..+...
T Consensus 106 ~~~~~~~~~fD~V~~~~~l~~~---~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~ 159 (313)
T 3bgv_A 106 DKFRDPQMCFDICSCQFVCHYS---FESYEQADMMLRNACERLSPGGYFIGTTPNSF 159 (313)
T ss_dssp TTCSSTTCCEEEEEEETCGGGG---GGSHHHHHHHHHHHHTTEEEEEEEEEEEECHH
T ss_pred hhcccCCCCEEEEEEecchhhc---cCCHHHHHHHHHHHHHHhCCCcEEEEecCChH
Confidence 13 34589999999999874 12346778999999999999999999887653
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-16 Score=121.52 Aligned_cols=121 Identities=18% Similarity=0.255 Sum_probs=94.6
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCC
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~ 115 (252)
.++...++++.+|||+|||+|.++..+++. +..+++++|+++.+++.+++++... ++++++++|+.+++...+++
T Consensus 14 ~~~~~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~ 93 (197)
T 3eey_A 14 DYIKMFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKYIDCP 93 (197)
T ss_dssp HHHHHHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGTCCSC
T ss_pred HHHHhcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhhccCC
Confidence 344455778889999999999999999987 3459999999999999999998542 47999999998875445678
Q ss_pred eeEEEeccchhhhc--CCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 116 FDAVIDKGTLDSLM--CGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 116 ~D~v~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
||+|+++.++.... .......+...+++++.++|+|||.+++..+.
T Consensus 94 fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~ 141 (197)
T 3eey_A 94 VKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIYY 141 (197)
T ss_dssp EEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEcc
Confidence 99999987651100 00112356778999999999999999998754
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.4e-16 Score=121.24 Aligned_cols=111 Identities=14% Similarity=0.148 Sum_probs=93.2
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCe
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~ 116 (252)
+.+.+...++++.+|||+|||+|.++..+++.+..+++++|+++.+++.+++++... .+++++++|+.+.. .++|
T Consensus 50 ~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~---~~~f 126 (205)
T 3grz_A 50 AMLGIERAMVKPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV---DGKF 126 (205)
T ss_dssp HHHHHHHHCSSCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC---CSCE
T ss_pred HHHHHHHhccCCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC---CCCc
Confidence 455666667788899999999999999999887669999999999999999987532 25999999997753 4789
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|+|+++.+++++ ..+++++.++|+|||.+++.++..
T Consensus 127 D~i~~~~~~~~~----------~~~l~~~~~~L~~gG~l~~~~~~~ 162 (205)
T 3grz_A 127 DLIVANILAEIL----------LDLIPQLDSHLNEDGQVIFSGIDY 162 (205)
T ss_dssp EEEEEESCHHHH----------HHHGGGSGGGEEEEEEEEEEEEEG
T ss_pred eEEEECCcHHHH----------HHHHHHHHHhcCCCCEEEEEecCc
Confidence 999998877665 688999999999999999976543
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-15 Score=121.58 Aligned_cols=113 Identities=16% Similarity=0.193 Sum_probs=88.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCC-CCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSF-FEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~-~~~~~~D~v~~~~~ 124 (252)
++.+|||+|||+|.++..++..+..+++++|+++.+++.|++++...+ +++++++|+.+... ++.++||+|+++.+
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii~npP 128 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEIIEYDLKKITDLIPKERADIVTCNPP 128 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHHTTCTTTEEEECSCGGGGGGTSCTTCEEEEEECCC
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCcccEEEEECcHHHhhhhhccCCccEEEECCC
Confidence 677999999999999999999875599999999999999999985432 69999999988752 44689999999877
Q ss_pred hhhh-cCCCCC------------hhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSL-MCGTNA------------PISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~-~~~~~~------------~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+... ..+..+ ......+++.+.++|+|||.++++...
T Consensus 129 y~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 178 (259)
T 3lpm_A 129 YFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQGGKANFVHRP 178 (259)
T ss_dssp C-----------------------HHHHHHHHHHHHHEEEEEEEEEEECT
T ss_pred CCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCCcEEEEEEcH
Confidence 6432 111111 134678999999999999999987643
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=125.24 Aligned_cols=104 Identities=13% Similarity=0.242 Sum_probs=84.8
Q ss_pred CCCcEEEEcccCcH----hHHHHHHc-C----CCcEEEEeCCHHHHHHHHHhhc--------------------C---C-
Q 025475 49 TSSRVLMVGCGNAL----MSEDMVKD-G----YEDIVNIDISSVAIDMMKMKYE--------------------E---I- 95 (252)
Q Consensus 49 ~~~~vLD~G~G~G~----~~~~l~~~-~----~~~v~~vD~s~~~i~~a~~~~~--------------------~---~- 95 (252)
++.+|+|+|||+|. ++..+++. + ..+|+|+|+|+.|++.|++..- . .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~ 184 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 184 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence 35699999999998 55555554 3 1389999999999999998641 0 0
Q ss_pred ---------CCCeEEEccccCCCCCC-CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 96 ---------PQLKYLQMDVRDMSFFE-DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 96 ---------~~v~~~~~d~~~~~~~~-~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
.++.+.+.|+.+.+ ++ .++||+|+|.++++|+ +++...++++++++.|+|||+|++.
T Consensus 185 ~~~v~~~lr~~V~F~~~dl~~~~-~~~~~~fDlI~crnvliyf-----~~~~~~~vl~~~~~~L~pgG~L~lg 251 (274)
T 1af7_A 185 LVRVRQELANYVEFSSVNLLEKQ-YNVPGPFDAIFCRNVMIYF-----DKTTQEDILRRFVPLLKPDGLLFAG 251 (274)
T ss_dssp EEEECHHHHTTEEEEECCTTCSS-CCCCCCEEEEEECSSGGGS-----CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred ceeechhhcccCeEEecccCCCC-CCcCCCeeEEEECCchHhC-----CHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 25889999998854 44 5789999999999999 7778899999999999999999873
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-15 Score=130.52 Aligned_cols=110 Identities=18% Similarity=0.321 Sum_probs=93.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
++.+|||+|||+|.++..+++.+. +|+++|+|+.+++.+++++...+ +++++++|+.+.. ..+++||+|+++.++|+
T Consensus 233 ~~~~VLDlGcG~G~~~~~la~~g~-~V~gvDis~~al~~A~~n~~~~~~~v~~~~~D~~~~~-~~~~~fD~Ii~npp~~~ 310 (381)
T 3dmg_A 233 RGRQVLDLGAGYGALTLPLARMGA-EVVGVEDDLASVLSLQKGLEANALKAQALHSDVDEAL-TEEARFDIIVTNPPFHV 310 (381)
T ss_dssp TTCEEEEETCTTSTTHHHHHHTTC-EEEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTS-CTTCCEEEEEECCCCCT
T ss_pred CCCEEEEEeeeCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCeEEEEcchhhcc-ccCCCeEEEEECCchhh
Confidence 567999999999999999999865 99999999999999999986533 5899999999886 45679999999999987
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
. ..........+++++.++|+|||.++++....
T Consensus 311 ~--~~~~~~~~~~~l~~~~~~LkpGG~l~iv~n~~ 343 (381)
T 3dmg_A 311 G--GAVILDVAQAFVNVAAARLRPGGVFFLVSNPF 343 (381)
T ss_dssp T--CSSCCHHHHHHHHHHHHHEEEEEEEEEEECTT
T ss_pred c--ccccHHHHHHHHHHHHHhcCcCcEEEEEEcCC
Confidence 2 00123788999999999999999999987544
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.2e-15 Score=120.97 Aligned_cols=101 Identities=19% Similarity=0.210 Sum_probs=86.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...++++++++|+.+.. ...++||+|++..+++
T Consensus 68 ~~~~~~vLdiG~G~G~~~~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~ 145 (231)
T 1vbf_A 68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDRVVVWATAP 145 (231)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEEEEESSBBS
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHc-CEEEEEeCCHHHHHHHHHHHhhcCCeEEEECCccccc-ccCCCccEEEECCcHH
Confidence 3567799999999999999999987 5999999999999999999865557899999998743 2457899999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|+ . .++.++|+|||.+++.....
T Consensus 146 ~~-------~------~~~~~~L~pgG~l~~~~~~~ 168 (231)
T 1vbf_A 146 TL-------L------CKPYEQLKEGGIMILPIGVG 168 (231)
T ss_dssp SC-------C------HHHHHTEEEEEEEEEEECSS
T ss_pred HH-------H------HHHHHHcCCCcEEEEEEcCC
Confidence 98 2 36889999999999987544
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.63 E-value=2.3e-15 Score=124.27 Aligned_cols=109 Identities=21% Similarity=0.273 Sum_probs=91.1
Q ss_pred CCCcEEEEcccC---cHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----------CCCCC
Q 025475 49 TSSRVLMVGCGN---ALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----------FFEDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~---G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----------~~~~~ 114 (252)
+..+|||+|||+ |.++..+.... ..+|+++|+|+.|++.+++++...++++++++|+.+.. .+...
T Consensus 77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~~~~v~~~~~D~~~~~~~~~~~~~~~~~d~~ 156 (274)
T 2qe6_A 77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAKDPNTAVFTADVRDPEYILNHPDVRRMIDFS 156 (274)
T ss_dssp CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTTCTTEEEEECCTTCHHHHHHSHHHHHHCCTT
T ss_pred CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCCCCCeEEEEeeCCCchhhhccchhhccCCCC
Confidence 346999999999 98877766652 35999999999999999999865568999999997631 02334
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+||+|++..++||+ +++++..++++++++|+|||+|++.+...
T Consensus 157 ~~d~v~~~~vlh~~-----~d~~~~~~l~~~~~~L~pGG~l~i~~~~~ 199 (274)
T 2qe6_A 157 RPAAIMLVGMLHYL-----SPDVVDRVVGAYRDALAPGSYLFMTSLVD 199 (274)
T ss_dssp SCCEEEETTTGGGS-----CTTTHHHHHHHHHHHSCTTCEEEEEEEBC
T ss_pred CCEEEEEechhhhC-----CcHHHHHHHHHHHHhCCCCcEEEEEEecC
Confidence 89999999999999 55568999999999999999999998765
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-15 Score=118.05 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=80.2
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC---CCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM---SFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~---~~~~~~~~D~v~~~ 122 (252)
++++.+|||+|||+|..+..+++.. ..+|+|+|+|+.|++.+.+..+..+++.++++|+.+. ..+. ++||+|+++
T Consensus 55 ~~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~-~~fD~V~~~ 133 (210)
T 1nt2_A 55 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFDASKPWKYSGIV-EKVDLIYQD 133 (210)
T ss_dssp CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSCTTCGGGTTTTC-CCEEEEEEC
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhcCCCeEEEEcCCCCchhhcccc-cceeEEEEe
Confidence 3577799999999999999998873 4589999999998776665554445788888998774 2133 789999987
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.. .+.+...++++++++|||||.+++..
T Consensus 134 ~~---------~~~~~~~~l~~~~r~LkpgG~l~i~~ 161 (210)
T 1nt2_A 134 IA---------QKNQIEILKANAEFFLKEKGEVVIMV 161 (210)
T ss_dssp CC---------STTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cc---------ChhHHHHHHHHHHHHhCCCCEEEEEE
Confidence 21 22455667999999999999999874
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.2e-16 Score=129.21 Aligned_cols=107 Identities=13% Similarity=0.073 Sum_probs=81.7
Q ss_pred CCCcEEEEcccCcHhHHHH----HHcC-CCc--EEEEeCCHHHHHHHHHhhcCC---CCCe--EEEccccCCC-----CC
Q 025475 49 TSSRVLMVGCGNALMSEDM----VKDG-YED--IVNIDISSVAIDMMKMKYEEI---PQLK--YLQMDVRDMS-----FF 111 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l----~~~~-~~~--v~~vD~s~~~i~~a~~~~~~~---~~v~--~~~~d~~~~~-----~~ 111 (252)
++.+|||+|||+|.++..+ +..+ ... ++++|+|+.|++.+++++... +++. +.++++.+++ .+
T Consensus 52 ~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~ 131 (292)
T 2aot_A 52 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEKK 131 (292)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTTT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhcccc
Confidence 4569999999999866543 3322 233 399999999999999987532 3444 3455554432 13
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
++++||+|++..++||+ +++.+++++++++|||||.+++.....
T Consensus 132 ~~~~fD~V~~~~~l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~ 175 (292)
T 2aot_A 132 ELQKWDFIHMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIVVSG 175 (292)
T ss_dssp CCCCEEEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred CCCceeEEEEeeeeeec-------CCHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 56789999999999999 899999999999999999999987553
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-15 Score=114.68 Aligned_cols=116 Identities=15% Similarity=0.289 Sum_probs=95.5
Q ss_pred hHHHHHhhC--CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCC--CeEEEccccCCCCCC
Q 025475 39 LRPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQ--LKYLQMDVRDMSFFE 112 (252)
Q Consensus 39 l~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~--v~~~~~d~~~~~~~~ 112 (252)
..+.+...+ .++.+|||+|||+|.++..+++. ..+++++|+++.+++.+++++.. ..+ ++++++|+.+. ..
T Consensus 40 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~-~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~--~~ 116 (194)
T 1dus_A 40 GTKILVENVVVDKDDDILDLGCGYGVIGIALADE-VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN--VK 116 (194)
T ss_dssp HHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG-SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT--CT
T ss_pred HHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc-CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhcc--cc
Confidence 334444443 36679999999999999999988 45999999999999999998753 234 89999999885 35
Q ss_pred CCCeeEEEeccchhh-hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 113 DESFDAVIDKGTLDS-LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~-~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
.++||+|+++.++++ . .....+++++.++|+|||.+++.......
T Consensus 117 ~~~~D~v~~~~~~~~~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 162 (194)
T 1dus_A 117 DRKYNKIITNPPIRAGK-------EVLHRIIEEGKELLKDNGEIWVVIQTKQG 162 (194)
T ss_dssp TSCEEEEEECCCSTTCH-------HHHHHHHHHHHHHEEEEEEEEEEEESTHH
T ss_pred cCCceEEEECCCcccch-------hHHHHHHHHHHHHcCCCCEEEEEECCCCC
Confidence 678999999988876 4 77889999999999999999999876543
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.62 E-value=6e-16 Score=118.95 Aligned_cols=115 Identities=15% Similarity=0.168 Sum_probs=92.2
Q ss_pred chhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCC
Q 025475 36 YSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFED 113 (252)
Q Consensus 36 ~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~ 113 (252)
+..+-..+...+++..+|||+|||+|.++..++... ..+|+++|+|+.|++.+++++...+ ..++..+|.... .+.
T Consensus 36 ld~fY~~~~~~l~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~~d~~~~--~~~ 113 (200)
T 3fzg_A 36 LNDFYTYVFGNIKHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRFLNKESD--VYK 113 (200)
T ss_dssp HHHHHHHHHHHSCCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHSCCSSEEEEECCHHH--HTT
T ss_pred HHHHHHHHHhhcCCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCccEEEeccccc--CCC
Confidence 344445555667888899999999999999997773 4499999999999999999986533 224444666544 356
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++||+|++..++|++ ++++..+.++.+.|+|||+++-..
T Consensus 114 ~~~DvVLa~k~LHlL-------~~~~~al~~v~~~L~pggvfISfp 152 (200)
T 3fzg_A 114 GTYDVVFLLKMLPVL-------KQQDVNILDFLQLFHTQNFVISFP 152 (200)
T ss_dssp SEEEEEEEETCHHHH-------HHTTCCHHHHHHTCEEEEEEEEEE
T ss_pred CCcChhhHhhHHHhh-------hhhHHHHHHHHHHhCCCCEEEEeC
Confidence 789999999999999 888888889999999999987655
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.62 E-value=7.2e-15 Score=115.82 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=87.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.+++++.. .++++++++|+.+.. ...++||+|++..
T Consensus 38 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~~ 116 (204)
T 3e05_A 38 LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGL-DDLPDPDRVFIGG 116 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTC-TTSCCCSEEEESC
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhh-hcCCCCCEEEECC
Confidence 4567799999999999999999986 46999999999999999998743 357999999997654 2336799999876
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+++ +...+++++.++|+|||.+++....
T Consensus 117 ~~~----------~~~~~l~~~~~~LkpgG~l~~~~~~ 144 (204)
T 3e05_A 117 SGG----------MLEEIIDAVDRRLKSEGVIVLNAVT 144 (204)
T ss_dssp CTT----------CHHHHHHHHHHHCCTTCEEEEEECB
T ss_pred CCc----------CHHHHHHHHHHhcCCCeEEEEEecc
Confidence 544 4578999999999999999998755
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.62 E-value=8.6e-15 Score=117.20 Aligned_cols=123 Identities=15% Similarity=0.163 Sum_probs=96.8
Q ss_pred eeeeccchhhHHHHHhh-----CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE
Q 025475 30 FDWYQRYSALRPFVRKY-----IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ 102 (252)
Q Consensus 30 ~~~~~~~~~l~~~~~~~-----~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~ 102 (252)
..|-...+.+...+..- ++|+.+|||+|||+|.++..+++. | .++|+++|+++.|++.++++....+++..+.
T Consensus 53 r~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~~ni~~V~ 132 (233)
T 4df3_A 53 REWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDRRNIFPIL 132 (233)
T ss_dssp EECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTCTTEEEEE
T ss_pred eeECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhhcCeeEEE
Confidence 34544444455544432 578999999999999999999987 4 5689999999999999999988777899999
Q ss_pred ccccCCCC--CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 103 MDVRDMSF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 103 ~d~~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|..+... ...+++|+|++.. .+. .+...++.++.+.|||||.++++...
T Consensus 133 ~d~~~p~~~~~~~~~vDvVf~d~--~~~-------~~~~~~l~~~~r~LKpGG~lvI~ik~ 184 (233)
T 4df3_A 133 GDARFPEKYRHLVEGVDGLYADV--AQP-------EQAAIVVRNARFFLRDGGYMLMAIKA 184 (233)
T ss_dssp SCTTCGGGGTTTCCCEEEEEECC--CCT-------THHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EeccCccccccccceEEEEEEec--cCC-------hhHHHHHHHHHHhccCCCEEEEEEec
Confidence 99876431 4567899998643 233 67788999999999999999987543
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=119.37 Aligned_cols=103 Identities=21% Similarity=0.335 Sum_probs=89.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC-CCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++. .+++++|+.+.. .+++++||+|++..+++
T Consensus 31 ~~~~~vLdiG~G~G~~~~~l~~~~-~~~~~~D~~~~~~~~~~~~~-----~~~~~~d~~~~~~~~~~~~fD~v~~~~~l~ 104 (230)
T 3cc8_A 31 KEWKEVLDIGCSSGALGAAIKENG-TRVSGIEAFPEAAEQAKEKL-----DHVVLGDIETMDMPYEEEQFDCVIFGDVLE 104 (230)
T ss_dssp TTCSEEEEETCTTSHHHHHHHTTT-CEEEEEESSHHHHHHHHTTS-----SEEEESCTTTCCCCSCTTCEEEEEEESCGG
T ss_pred cCCCcEEEeCCCCCHHHHHHHhcC-CeEEEEeCCHHHHHHHHHhC-----CcEEEcchhhcCCCCCCCccCEEEECChhh
Confidence 467799999999999999999986 69999999999999998765 378889988632 15678999999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+ .++..+++++.++|+|||.+++..+...
T Consensus 105 ~~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~ 134 (230)
T 3cc8_A 105 HL-------FDPWAVIEKVKPYIKQNGVILASIPNVS 134 (230)
T ss_dssp GS-------SCHHHHHHHTGGGEEEEEEEEEEEECTT
T ss_pred hc-------CCHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 99 7788999999999999999999886543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.62 E-value=1e-15 Score=120.63 Aligned_cols=106 Identities=15% Similarity=0.191 Sum_probs=87.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C--CCCeEEEccccCCCC-CCCCC-eeEEEec
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I--PQLKYLQMDVRDMSF-FEDES-FDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~--~~v~~~~~d~~~~~~-~~~~~-~D~v~~~ 122 (252)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|++++.. . ++++++++|+.+... ..+++ ||+|+++
T Consensus 53 ~~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~ 132 (201)
T 2ift_A 53 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 132 (201)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred CCCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhhccCCCCCEEEEC
Confidence 4679999999999999998888766999999999999999998853 2 478999999987531 23578 9999998
Q ss_pred cchhhhcCCCCChhhHHHHHHHH--HHcccCCcEEEEEEcCC
Q 025475 123 GTLDSLMCGTNAPISASQMLGEV--SRLLKPGGIYMLITYGD 162 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~--~~~L~~gG~l~i~~~~~ 162 (252)
.+++ . .....+++.+ .++|+|||.+++.....
T Consensus 133 ~~~~-~-------~~~~~~l~~~~~~~~LkpgG~l~i~~~~~ 166 (201)
T 2ift_A 133 PPFH-F-------NLAEQAISLLCENNWLKPNALIYVETEKD 166 (201)
T ss_dssp CCSS-S-------CHHHHHHHHHHHTTCEEEEEEEEEEEESS
T ss_pred CCCC-C-------ccHHHHHHHHHhcCccCCCcEEEEEECCC
Confidence 8744 4 5677788888 67899999999877543
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.61 E-value=6.1e-15 Score=126.52 Aligned_cols=109 Identities=16% Similarity=0.197 Sum_probs=93.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-CCCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FFEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-~~~~~~~D~v~~~ 122 (252)
....+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++++... ++++++.+|+.+.. +++ ++||+|++.
T Consensus 178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v~~~ 255 (363)
T 3dp7_A 178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLDRDVPFP-TGFDAVWMS 255 (363)
T ss_dssp GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCSSSCCCC-CCCSEEEEE
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccccCCCCC-CCcCEEEEe
Confidence 355699999999999999999863 458999999 99999999988643 36999999998852 144 689999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.++|++ ++++..+++++++++|+|||.+++.+...+
T Consensus 256 ~vlh~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 291 (363)
T 3dp7_A 256 QFLDCF-----SEEEVISILTRVAQSIGKDSKVYIMETLWD 291 (363)
T ss_dssp SCSTTS-----CHHHHHHHHHHHHHHCCTTCEEEEEECCTT
T ss_pred chhhhC-----CHHHHHHHHHHHHHhcCCCcEEEEEeeccC
Confidence 999999 777888999999999999999999886543
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=135.42 Aligned_cols=107 Identities=13% Similarity=0.221 Sum_probs=92.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhc--------CCCCCeEEEccccCCCCCCCCCeeE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYE--------EIPQLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~--------~~~~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.|++.|++++. ..++++++++|+.+++ +.+++||+
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp-~~d~sFDl 799 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD-SRLHDVDI 799 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC-TTSCSCCE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC-cccCCeeE
Confidence 67799999999999999999986 2599999999999999988553 2347999999999988 77789999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|++..+++|+ ++.....+++++.++|+|| .+++.+++.
T Consensus 800 VV~~eVLeHL-----~dp~l~~~L~eI~RvLKPG-~LIISTPN~ 837 (950)
T 3htx_A 800 GTCLEVIEHM-----EEDQACEFGEKVLSLFHPK-LLIVSTPNY 837 (950)
T ss_dssp EEEESCGGGS-----CHHHHHHHHHHHHHTTCCS-EEEEEECBG
T ss_pred EEEeCchhhC-----ChHHHHHHHHHHHHHcCCC-EEEEEecCc
Confidence 9999999999 6666678999999999999 887777554
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.5e-15 Score=125.65 Aligned_cols=104 Identities=19% Similarity=0.208 Sum_probs=86.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
..++.+|||+|||+|.++..+++.|..+|+++|+++ +++.|+++++.. ++++++++|+.+++ +++++||+|++..
T Consensus 62 ~~~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~ 139 (340)
T 2fyt_A 62 IFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEW 139 (340)
T ss_dssp GTTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECC
T ss_pred hcCCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhc-CCCCcEEEEEEcC
Confidence 356779999999999999999998766999999996 999999887532 47999999999987 7778999999987
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
+.+.+ ....++..++.++.++|+|||.++
T Consensus 140 ~~~~l----~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 140 MGYFL----LFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp CBTTB----TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred chhhc----cCHHHHHHHHHHHHhhcCCCcEEE
Confidence 32222 122678899999999999999987
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.60 E-value=3e-15 Score=120.00 Aligned_cols=100 Identities=12% Similarity=0.321 Sum_probs=83.7
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcccc-CCCCCC-CCCee
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVR-DMSFFE-DESFD 117 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~-~~~~~~-~~~~D 117 (252)
..++...++++.+|||+|||+|.++..+++.+. +++++|+|+.+++.++++ .++++++++|+. .++ +. +++||
T Consensus 39 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~vD~s~~~~~~a~~~---~~~~~~~~~d~~~~~~-~~~~~~fD 113 (226)
T 3m33_A 39 DLWLSRLLTPQTRVLEAGCGHGPDAARFGPQAA-RWAAYDFSPELLKLARAN---APHADVYEWNGKGELP-AGLGAPFG 113 (226)
T ss_dssp HHHHHHHCCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHH---CTTSEEEECCSCSSCC-TTCCCCEE
T ss_pred HHHHHhcCCCCCeEEEeCCCCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHh---CCCceEEEcchhhccC-CcCCCCEE
Confidence 344555567888999999999999999999864 999999999999999998 357999999995 455 66 78999
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
+|+++ .++..++++++++|+|||.++.
T Consensus 114 ~v~~~-------------~~~~~~l~~~~~~LkpgG~l~~ 140 (226)
T 3m33_A 114 LIVSR-------------RGPTSVILRLPELAAPDAHFLY 140 (226)
T ss_dssp EEEEE-------------SCCSGGGGGHHHHEEEEEEEEE
T ss_pred EEEeC-------------CCHHHHHHHHHHHcCCCcEEEE
Confidence 99986 2345678899999999999983
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=5.6e-17 Score=131.20 Aligned_cols=99 Identities=16% Similarity=0.192 Sum_probs=85.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.+++++... ++++++++|+.+.+ ++++||+|+++.++
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~--~~~~~D~v~~~~~~ 154 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTG-MRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLA--SFLKADVVFLSPPW 154 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHG--GGCCCSEEEECCCC
T ss_pred CCCEEEECccccCHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhc--ccCCCCEEEECCCc
Confidence 67799999999999999999987 59999999999999999988543 37899999998875 55789999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
++. ......+.+++++|+|||.+++
T Consensus 155 ~~~-------~~~~~~~~~~~~~L~pgG~~i~ 179 (241)
T 3gdh_A 155 GGP-------DYATAETFDIRTMMSPDGFEIF 179 (241)
T ss_dssp SSG-------GGGGSSSBCTTTSCSSCHHHHH
T ss_pred CCc-------chhhhHHHHHHhhcCCcceeHH
Confidence 988 5555577788999999998655
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.6e-14 Score=114.71 Aligned_cols=114 Identities=21% Similarity=0.232 Sum_probs=87.0
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC-CCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF-FEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~-~~~~~~D~v~~~~ 123 (252)
+++.+|||+|||+|.++..++... ..+++|+|+++.+++.|+++... .++++++++|+.+++. +++++||+|+++.
T Consensus 40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~D~i~~~~ 119 (214)
T 1yzh_A 40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNF 119 (214)
T ss_dssp SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEES
T ss_pred CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCCCCCCEEEEEC
Confidence 456799999999999999999874 45899999999999999998743 3579999999988642 4567899999986
Q ss_pred chhhhcCC-CCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCG-TNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+..+.... .........+++++.++|+|||.+++.+..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~ 158 (214)
T 1yzh_A 120 SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN 158 (214)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC
Confidence 54322000 000002367999999999999999987643
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-15 Score=123.22 Aligned_cols=117 Identities=13% Similarity=0.131 Sum_probs=94.7
Q ss_pred eeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CC-CCeEEEccccCC
Q 025475 32 WYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IP-QLKYLQMDVRDM 108 (252)
Q Consensus 32 ~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~-~v~~~~~d~~~~ 108 (252)
|.+........+...++++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++.. .. +++++++|+.+.
T Consensus 108 f~~~~~~~~~~l~~~~~~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~ 187 (278)
T 2frn_A 108 FSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDF 187 (278)
T ss_dssp CCGGGHHHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTC
T ss_pred EcCCcHHHHHHHHHhCCCCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHh
Confidence 444444455666667788899999999999999999998754799999999999999998753 22 488999999998
Q ss_pred CCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 109 SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 109 ~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
. . .++||+|+++.. .....++.++.++|+|||.+++.++.
T Consensus 188 ~-~-~~~fD~Vi~~~p-----------~~~~~~l~~~~~~LkpgG~l~~~~~~ 227 (278)
T 2frn_A 188 P-G-ENIADRILMGYV-----------VRTHEFIPKALSIAKDGAIIHYHNTV 227 (278)
T ss_dssp C-C-CSCEEEEEECCC-----------SSGGGGHHHHHHHEEEEEEEEEEEEE
T ss_pred c-c-cCCccEEEECCc-----------hhHHHHHHHHHHHCCCCeEEEEEEee
Confidence 7 3 678999998644 23356788999999999999998765
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.59 E-value=8.4e-16 Score=122.10 Aligned_cols=88 Identities=26% Similarity=0.419 Sum_probs=76.5
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.++.+|||+|||+|.++..++ .+++++|+++. +++++++|+.+.+ +++++||+|++..++|
T Consensus 66 ~~~~~vLDiG~G~G~~~~~l~----~~v~~~D~s~~-------------~~~~~~~d~~~~~-~~~~~fD~v~~~~~l~- 126 (215)
T 2zfu_A 66 PASLVVADFGCGDCRLASSIR----NPVHCFDLASL-------------DPRVTVCDMAQVP-LEDESVDVAVFCLSLM- 126 (215)
T ss_dssp CTTSCEEEETCTTCHHHHHCC----SCEEEEESSCS-------------STTEEESCTTSCS-CCTTCEEEEEEESCCC-
T ss_pred CCCCeEEEECCcCCHHHHHhh----ccEEEEeCCCC-------------CceEEEeccccCC-CCCCCEeEEEEehhcc-
Confidence 566799999999999988772 48999999986 4688999999887 7788999999999886
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
. .++..++++++++|+|||.+++.++.
T Consensus 127 ~-------~~~~~~l~~~~~~L~~gG~l~i~~~~ 153 (215)
T 2zfu_A 127 G-------TNIRDFLEEANRVLKPGGLLKVAEVS 153 (215)
T ss_dssp S-------SCHHHHHHHHHHHEEEEEEEEEEECG
T ss_pred c-------cCHHHHHHHHHHhCCCCeEEEEEEcC
Confidence 4 57789999999999999999998754
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.2e-14 Score=118.35 Aligned_cols=102 Identities=11% Similarity=0.155 Sum_probs=84.2
Q ss_pred hCCCCCcEEEEcccCcHhHHH-HHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 46 YIPTSSRVLMVGCGNALMSED-MVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~-l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
.++++.+|||+|||+|.++.. +++....+|+++|+++.+++.|+++++. ..+++++++|+.+++ +++||+|++.
T Consensus 119 ~l~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~---d~~FDvV~~~ 195 (298)
T 3fpf_A 119 RFRRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID---GLEFDVLMVA 195 (298)
T ss_dssp TCCTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG---GCCCSEEEEC
T ss_pred CCCCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC---CCCcCEEEEC
Confidence 467888999999999876644 4443345999999999999999998753 358999999998864 5789999975
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.. . ++..++++++.++|||||++++...
T Consensus 196 a~---~-------~d~~~~l~el~r~LkPGG~Lvv~~~ 223 (298)
T 3fpf_A 196 AL---A-------EPKRRVFRNIHRYVDTETRIIYRTY 223 (298)
T ss_dssp TT---C-------SCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred CC---c-------cCHHHHHHHHHHHcCCCcEEEEEcC
Confidence 43 3 6788999999999999999998774
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.59 E-value=3.8e-15 Score=122.64 Aligned_cols=109 Identities=17% Similarity=0.178 Sum_probs=90.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHH------HHHHHHHhhcCC---CCCeEEEcc-c--cCCCCCC
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSV------AIDMMKMKYEEI---PQLKYLQMD-V--RDMSFFE 112 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~------~i~~a~~~~~~~---~~v~~~~~d-~--~~~~~~~ 112 (252)
++++.+|||+|||+|.++..+++. | ..+++++|+|+. +++.+++++... ++++++++| . ...+ ++
T Consensus 41 ~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~-~~ 119 (275)
T 3bkx_A 41 VKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNTNLSDDLGP-IA 119 (275)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSCCTTTCCGG-GT
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECChhhhccCC-CC
Confidence 467789999999999999999987 4 259999999997 999999988543 368999998 3 3344 56
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+++||+|++..+++|+ .+...+++.+.++++|||.+++.++..+
T Consensus 120 ~~~fD~v~~~~~l~~~-------~~~~~~~~~~~~l~~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 120 DQHFDRVVLAHSLWYF-------ASANALALLFKNMAAVCDHVDVAEWSMQ 163 (275)
T ss_dssp TCCCSEEEEESCGGGS-------SCHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred CCCEEEEEEccchhhC-------CCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 7899999999999999 5666677777888888999999987653
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-15 Score=128.31 Aligned_cols=116 Identities=8% Similarity=0.057 Sum_probs=91.0
Q ss_pred HHHHHhh-CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc---------C--CCCCeEEEcccc
Q 025475 40 RPFVRKY-IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE---------E--IPQLKYLQMDVR 106 (252)
Q Consensus 40 ~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~---------~--~~~v~~~~~d~~ 106 (252)
..++... +.++.+|||+|||+|.++..++.. +..+++|||+++.+++.|+++.+ + ..+++++++|+.
T Consensus 163 ~~il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~ 242 (438)
T 3uwp_A 163 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 242 (438)
T ss_dssp HHHHHHHCCCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTT
T ss_pred HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECccc
Confidence 3344332 567889999999999999999865 55469999999999999987531 1 257999999999
Q ss_pred CCCCCCC--CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 107 DMSFFED--ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 107 ~~~~~~~--~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+.+ +.+ ..||+|+++.++ +. ++....|.++++.|||||.+++.+...|.
T Consensus 243 ~lp-~~d~~~~aDVVf~Nn~~-F~-------pdl~~aL~Ei~RvLKPGGrIVssE~f~p~ 293 (438)
T 3uwp_A 243 SEE-WRERIANTSVIFVNNFA-FG-------PEVDHQLKERFANMKEGGRIVSSKPFAPL 293 (438)
T ss_dssp SHH-HHHHHHTCSEEEECCTT-CC-------HHHHHHHHHHHTTSCTTCEEEESSCSSCT
T ss_pred CCc-cccccCCccEEEEcccc-cC-------chHHHHHHHHHHcCCCCcEEEEeecccCC
Confidence 876 433 469999998765 33 67788889999999999999998755443
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.9e-15 Score=115.31 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=85.5
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++.+..+++++|+++.+++.+++++... ++++++++|+.+......++||+|+++.+
T Consensus 30 ~~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~fD~i~~~~~ 109 (177)
T 2esr_A 30 FNGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPP 109 (177)
T ss_dssp CCSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCS
T ss_pred cCCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhhcCCCCEEEECCC
Confidence 466799999999999999999987669999999999999999988654 26899999988742133457999999877
Q ss_pred hhhhcCCCCChhhHHHHHHHHH--HcccCCcEEEEEEcCC
Q 025475 125 LDSLMCGTNAPISASQMLGEVS--RLLKPGGIYMLITYGD 162 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~i~~~~~ 162 (252)
++. ......++.+. ++|+|||.+++.....
T Consensus 110 ~~~--------~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 141 (177)
T 2esr_A 110 YAK--------ETIVATIEALAAKNLLSEQVMVVCETDKT 141 (177)
T ss_dssp SHH--------HHHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCc--------chHHHHHHHHHhCCCcCCCcEEEEEECCc
Confidence 643 34456666666 9999999999877543
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=114.99 Aligned_cols=100 Identities=16% Similarity=0.174 Sum_probs=85.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++.. .++++++++|+.+.. ...++||+|++..+
T Consensus 75 ~~~~~~vLdiG~G~G~~~~~la~~~-~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~D~i~~~~~ 152 (210)
T 3lbf_A 75 LTPQSRVLEIGTGSGYQTAILAHLV-QHVCSVERIKGLQWQARRRLKNLDLHNVSTRHGDGWQGW-QARAPFDAIIVTAA 152 (210)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEESSB
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhC-CEEEEEecCHHHHHHHHHHHHHcCCCceEEEECCcccCC-ccCCCccEEEEccc
Confidence 3567799999999999999999984 5999999999999999998854 347999999998865 45678999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++|+ .+ ++.++|+|||++++....
T Consensus 153 ~~~~-------~~------~~~~~L~pgG~lv~~~~~ 176 (210)
T 3lbf_A 153 PPEI-------PT------ALMTQLDEGGILVLPVGE 176 (210)
T ss_dssp CSSC-------CT------HHHHTEEEEEEEEEEECS
T ss_pred hhhh-------hH------HHHHhcccCcEEEEEEcC
Confidence 9988 22 578999999999998754
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.9e-14 Score=114.52 Aligned_cols=112 Identities=16% Similarity=0.170 Sum_probs=86.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC---CC---CCeEEEccccCCC------CCCCC
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE---IP---QLKYLQMDVRDMS------FFEDE 114 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~---~~---~v~~~~~d~~~~~------~~~~~ 114 (252)
.++.+|||+|||+|.++..++... ..+++++|+++.+++.|++++.. .+ +++++++|+.+.. .++.+
T Consensus 35 ~~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~~~ 114 (260)
T 2ozv_A 35 DRACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTLRAKARVEAGLPDE 114 (260)
T ss_dssp CSCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTCCHHHHHHTTCCTT
T ss_pred cCCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHHHhhhhhhhccCCC
Confidence 356699999999999999999885 45899999999999999999865 33 4899999998872 14567
Q ss_pred CeeEEEeccchhhhcCCC------------CChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 115 SFDAVIDKGTLDSLMCGT------------NAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~------------~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+||+|+++.++.... +. ........+++.+.++|+|||.+++...
T Consensus 115 ~fD~Vv~nPPy~~~~-~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 171 (260)
T 2ozv_A 115 HFHHVIMNPPYNDAG-DRRTPDALKAEAHAMTEGLFEDWIRTASAIMVSGGQLSLISR 171 (260)
T ss_dssp CEEEEEECCCC----------------------CCHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CcCEEEECCCCcCCC-CCCCcCHHHHHHhhcCcCCHHHHHHHHHHHcCCCCEEEEEEc
Confidence 899999997654320 00 0112367889999999999999988664
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=111.39 Aligned_cols=102 Identities=15% Similarity=0.173 Sum_probs=81.0
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.++.+|||+|||+|.++..+++.+ +++|+|+|+.|++. .++++++++|+.+. +++++||+|+++.++++
T Consensus 22 ~~~~~vLD~GcG~G~~~~~l~~~~--~v~gvD~s~~~~~~-------~~~~~~~~~d~~~~--~~~~~fD~i~~n~~~~~ 90 (170)
T 3q87_B 22 LEMKIVLDLGTSTGVITEQLRKRN--TVVSTDLNIRALES-------HRGGNLVRADLLCS--INQESVDVVVFNPPYVP 90 (170)
T ss_dssp CCSCEEEEETCTTCHHHHHHTTTS--EEEEEESCHHHHHT-------CSSSCEEECSTTTT--BCGGGCSEEEECCCCBT
T ss_pred CCCCeEEEeccCccHHHHHHHhcC--cEEEEECCHHHHhc-------ccCCeEEECChhhh--cccCCCCEEEECCCCcc
Confidence 456699999999999999999986 99999999999987 35789999999884 46689999999998886
Q ss_pred hcCC--CCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 128 LMCG--TNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 128 ~~~~--~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..-. .....+...+++++.+.| |||.+++....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~~ 125 (170)
T 3q87_B 91 DTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVIE 125 (170)
T ss_dssp TCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEEG
T ss_pred CCccccccCCcchHHHHHHHHhhC-CCCEEEEEEec
Confidence 5000 001123466788888888 99999998754
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.58 E-value=8.9e-15 Score=117.59 Aligned_cols=101 Identities=16% Similarity=0.231 Sum_probs=84.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC----CCCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD----MSFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~----~~~~~~~~~D~v~~ 121 (252)
+.++.+|||+|||+|.++..+++. +..+|+++|+|+.+++.++++....+++.++++|+.+ .+ +. ++||+|+.
T Consensus 72 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~v~~~~~d~~~~~~~~~-~~-~~~D~v~~ 149 (230)
T 1fbn_A 72 IKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILGDANKPQEYAN-IV-EKVDVIYE 149 (230)
T ss_dssp CCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEECCTTCGGGGTT-TS-CCEEEEEE
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhhcCCCeEEEECCCCCcccccc-cC-ccEEEEEE
Confidence 346779999999999999999988 4469999999999999999988665789999999987 54 44 68999993
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
++ +.+.....+++++.++|+|||.+++.
T Consensus 150 -----~~----~~~~~~~~~l~~~~~~LkpgG~l~i~ 177 (230)
T 1fbn_A 150 -----DV----AQPNQAEILIKNAKWFLKKGGYGMIA 177 (230)
T ss_dssp -----CC----CSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -----ec----CChhHHHHHHHHHHHhCCCCcEEEEE
Confidence 33 23345578899999999999999986
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-15 Score=117.26 Aligned_cols=104 Identities=5% Similarity=0.026 Sum_probs=84.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++.+|||+|||+|.++..++..+..+|+++|+|+.+++.+++++... ++++++++|+.+......++||+|+++.+++
T Consensus 54 ~~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~~p~~ 133 (202)
T 2fpo_A 54 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 133 (202)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred CCCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhhcCCCCCEEEECCCCC
Confidence 46799999999999999988887669999999999999999988543 4789999999874214567899999987744
Q ss_pred hhcCCCCChhhHHHHHHHHHH--cccCCcEEEEEEc
Q 025475 127 SLMCGTNAPISASQMLGEVSR--LLKPGGIYMLITY 160 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~--~L~~gG~l~i~~~ 160 (252)
. .....+++.+.+ +|+|||.+++...
T Consensus 134 -~-------~~~~~~l~~l~~~~~L~pgG~l~i~~~ 161 (202)
T 2fpo_A 134 -R-------GLLEETINLLEDNGWLADEALIYVESE 161 (202)
T ss_dssp -T-------TTHHHHHHHHHHTTCEEEEEEEEEEEE
T ss_pred -C-------CcHHHHHHHHHhcCccCCCcEEEEEEC
Confidence 3 456677777765 5999999988764
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-16 Score=134.89 Aligned_cols=105 Identities=15% Similarity=0.226 Sum_probs=84.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.++.+|||+|||+|.++..+++.+. +++|+|+|+.+++.++++........+...+..+++ +++++||+|++..+++|
T Consensus 106 ~~~~~VLDiGcG~G~~~~~l~~~g~-~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~~l~-~~~~~fD~I~~~~vl~h 183 (416)
T 4e2x_A 106 GPDPFIVEIGCNDGIMLRTIQEAGV-RHLGFEPSSGVAAKAREKGIRVRTDFFEKATADDVR-RTEGPANVIYAANTLCH 183 (416)
T ss_dssp SSSCEEEEETCTTTTTHHHHHHTTC-EEEEECCCHHHHHHHHTTTCCEECSCCSHHHHHHHH-HHHCCEEEEEEESCGGG
T ss_pred CCCCEEEEecCCCCHHHHHHHHcCC-cEEEECCCHHHHHHHHHcCCCcceeeechhhHhhcc-cCCCCEEEEEECChHHh
Confidence 4677999999999999999999876 999999999999999987211001112233344444 55689999999999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+ .++..++++++++|+|||++++....
T Consensus 184 ~-------~d~~~~l~~~~r~LkpgG~l~i~~~~ 210 (416)
T 4e2x_A 184 I-------PYVQSVLEGVDALLAPDGVFVFEDPY 210 (416)
T ss_dssp C-------TTHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred c-------CCHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 9 79999999999999999999998754
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.4e-15 Score=125.67 Aligned_cols=104 Identities=18% Similarity=0.197 Sum_probs=87.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++.|..+|+|+|+| .+++.|+++.+.. ++++++++|+.+.+ ++.++||+|++..+
T Consensus 65 ~~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~Iis~~~ 142 (349)
T 3q7e_A 65 FKDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWM 142 (349)
T ss_dssp HTTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCC
T ss_pred CCCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHcc-CCCCceEEEEEccc
Confidence 4678999999999999999999987799999999 4999999987542 24999999999987 77789999999775
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
.+++ .....+..++.++.++|+|||.++.
T Consensus 143 ~~~l----~~~~~~~~~l~~~~r~LkpgG~li~ 171 (349)
T 3q7e_A 143 GYCL----FYESMLNTVLHARDKWLAPDGLIFP 171 (349)
T ss_dssp BBTB----TBTCCHHHHHHHHHHHEEEEEEEES
T ss_pred cccc----cCchhHHHHHHHHHHhCCCCCEEcc
Confidence 4433 1336788999999999999999864
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.58 E-value=6.8e-15 Score=118.70 Aligned_cols=113 Identities=13% Similarity=0.141 Sum_probs=82.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc--------CCCCCeEEEccccC-CCC-CCCCC
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE--------EIPQLKYLQMDVRD-MSF-FEDES 115 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~--------~~~~v~~~~~d~~~-~~~-~~~~~ 115 (252)
..++.+|||+|||+|.++..++... ...++|+|+++.|++.|++++. ...+++++++|+.+ ++. +++++
T Consensus 44 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~ 123 (235)
T 3ckk_A 44 AQAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQ 123 (235)
T ss_dssp --CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTC
T ss_pred cCCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcC
Confidence 3456699999999999999999874 4589999999999999987653 23589999999987 321 46788
Q ss_pred eeEEEeccchhhhcCCCCChhh---HHHHHHHHHHcccCCcEEEEEEcC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPIS---ASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~---~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
||.|+++..-.+.. ...... ...+++++.++|+|||.+++.+..
T Consensus 124 ~D~v~~~~~dp~~k--~~h~krr~~~~~~l~~~~~~LkpGG~l~~~td~ 170 (235)
T 3ckk_A 124 LTKMFFLFPDPHFK--RTKHKWRIISPTLLAEYAYVLRVGGLVYTITDV 170 (235)
T ss_dssp EEEEEEESCC-------------CCCHHHHHHHHHHEEEEEEEEEEESC
T ss_pred eeEEEEeCCCchhh--hhhhhhhhhhHHHHHHHHHHCCCCCEEEEEeCC
Confidence 99998754322210 000001 147999999999999999988744
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.1e-15 Score=118.67 Aligned_cols=109 Identities=18% Similarity=0.173 Sum_probs=85.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCC-CC-CCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDM-SF-FEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~-~~-~~~~~~D~v~~~~ 123 (252)
++.+|||+|||+|.++..++... ...|+|+|+++.+++.|+++... ..+++++++|+.++ +. ++++++|.|+++.
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~ 113 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF 113 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHSCTTCEEEEEEES
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHcCCCChheEEEeC
Confidence 56799999999999999999874 45899999999999999998743 34799999998875 21 5678999999874
Q ss_pred chhhhcCCCCChhhH------HHHHHHHHHcccCCcEEEEEEcCC
Q 025475 124 TLDSLMCGTNAPISA------SQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~------~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+..+. ..... ..+++++.++|+|||.+++.+...
T Consensus 114 ~~p~~-----~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i~td~~ 153 (218)
T 3dxy_A 114 PDPWH-----KARHNKRRIVQVPFAELVKSKLQLGGVFHMATDWE 153 (218)
T ss_dssp CCCCC-----SGGGGGGSSCSHHHHHHHHHHEEEEEEEEEEESCH
T ss_pred CCCcc-----chhhhhhhhhhHHHHHHHHHHcCCCcEEEEEeCCH
Confidence 32221 11111 369999999999999999988543
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=1.5e-14 Score=122.49 Aligned_cols=107 Identities=12% Similarity=0.131 Sum_probs=90.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++++... ++++++.+|+.+. .+. +||+|++..+
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~p~-~~D~v~~~~v 244 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDP--LPA-GAGGYVLSAV 244 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC--CCC-SCSEEEEESC
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCC--CCC-CCcEEEEehh
Confidence 45699999999999999998864 458999999 99999999987532 4799999999843 344 7999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+||+ +++...+++++++++|+|||++++.+...+.
T Consensus 245 lh~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 279 (332)
T 3i53_A 245 LHDW-----DDLSAVAILRRCAEAAGSGGVVLVIEAVAGD 279 (332)
T ss_dssp GGGS-----CHHHHHHHHHHHHHHHTTTCEEEEEECCCC-
T ss_pred hccC-----CHHHHHHHHHHHHHhcCCCCEEEEEeecCCC
Confidence 9999 6666799999999999999999999876544
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-15 Score=116.75 Aligned_cols=107 Identities=16% Similarity=0.146 Sum_probs=84.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCC---CCCCCeeEEEe
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF---FEDESFDAVID 121 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~---~~~~~~D~v~~ 121 (252)
.++.+|||+|||+|.++..++..+..+++++|+++.+++.+++++... ++++++++|+.+... ...++||+|++
T Consensus 43 ~~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~ 122 (187)
T 2fhp_A 43 FDGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLL 122 (187)
T ss_dssp CSSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEE
T ss_pred cCCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHhcCCCCCEEEE
Confidence 356799999999999999988887669999999999999999987532 368999999877421 12578999999
Q ss_pred ccchhhhcCCCCChhhHHHHHHHH--HHcccCCcEEEEEEcCC
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEV--SRLLKPGGIYMLITYGD 162 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~--~~~L~~gG~l~i~~~~~ 162 (252)
+.+++. ......+..+ .++|+|||.+++.....
T Consensus 123 ~~~~~~--------~~~~~~~~~l~~~~~L~~gG~l~~~~~~~ 157 (187)
T 2fhp_A 123 DPPYAK--------QEIVSQLEKMLERQLLTNEAVIVCETDKT 157 (187)
T ss_dssp CCCGGG--------CCHHHHHHHHHHTTCEEEEEEEEEEEETT
T ss_pred CCCCCc--------hhHHHHHHHHHHhcccCCCCEEEEEeCCc
Confidence 988552 2345556666 89999999999877543
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-15 Score=121.25 Aligned_cols=120 Identities=14% Similarity=0.213 Sum_probs=90.0
Q ss_pred hHHHHHhhC-CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCC
Q 025475 39 LRPFVRKYI-PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 39 l~~~~~~~~-~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~ 114 (252)
+...+...+ .++.+|||+|||+|..+..++.. +..+++++|+|+.+++.++++... .++++++++|+.+. .+.+
T Consensus 98 l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~~~d~~~~--~~~~ 175 (276)
T 2b3t_A 98 LVEQALARLPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA--LAGQ 175 (276)
T ss_dssp HHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG--GTTC
T ss_pred HHHHHHHhcccCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEcchhhh--cccC
Confidence 344444444 45679999999999999999865 345999999999999999998753 23699999999875 3467
Q ss_pred CeeEEEeccchhhhc----------CCC--------CChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 115 SFDAVIDKGTLDSLM----------CGT--------NAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~----------~~~--------~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+||+|+++.+++... +.+ ........+++++.++|+|||.+++...
T Consensus 176 ~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~ 239 (276)
T 2b3t_A 176 QFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLLEHG 239 (276)
T ss_dssp CEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEEECC
T ss_pred CccEEEECCCCCCccccccChhhhhcCcHHHHcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC
Confidence 899999986543220 000 0014568899999999999999988653
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.56 E-value=5.5e-14 Score=115.99 Aligned_cols=102 Identities=17% Similarity=0.285 Sum_probs=86.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++... ++++++++|+.+. +++++||+|++
T Consensus 108 ~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~--~~~~~fD~Vi~ 185 (275)
T 1yb2_A 108 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF--ISDQMYDAVIA 185 (275)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC--CCSCCEEEEEE
T ss_pred CCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECchhcc--CcCCCccEEEE
Confidence 356779999999999999999987 2 459999999999999999998654 4799999999883 56678999998
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
++ .++..+++++.++|+|||.+++.+...
T Consensus 186 -----~~-------~~~~~~l~~~~~~LkpgG~l~i~~~~~ 214 (275)
T 1yb2_A 186 -----DI-------PDPWNHVQKIASMMKPGSVATFYLPNF 214 (275)
T ss_dssp -----CC-------SCGGGSHHHHHHTEEEEEEEEEEESSH
T ss_pred -----cC-------cCHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 33 455688999999999999999988654
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-14 Score=119.05 Aligned_cols=109 Identities=15% Similarity=0.215 Sum_probs=89.8
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeE
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
.+.+...+.++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++....+ .+++.++|+.+. ++.++||+
T Consensus 111 ~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~g~-~v~gvDi~~~~v~~a~~n~~~~~~~v~~~~~d~~~~--~~~~~fD~ 187 (254)
T 2nxc_A 111 LKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--LPFGPFDL 187 (254)
T ss_dssp HHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH--GGGCCEEE
T ss_pred HHHHHHhcCCCCEEEEecCCCcHHHHHHHHhCC-eEEEEECCHHHHHHHHHHHHHcCCcEEEEECChhhc--CcCCCCCE
Confidence 445555567788999999999999999999877 99999999999999999875432 288999988763 34568999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+++...+++ ..++.++.++|+|||.++++...
T Consensus 188 Vv~n~~~~~~----------~~~l~~~~~~LkpgG~lils~~~ 220 (254)
T 2nxc_A 188 LVANLYAELH----------AALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp EEEECCHHHH----------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred EEECCcHHHH----------HHHHHHHHHHcCCCCEEEEEeec
Confidence 9997655444 67899999999999999997754
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.7e-14 Score=122.09 Aligned_cols=108 Identities=12% Similarity=0.226 Sum_probs=92.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.++.+|||+|||+|.++..+++.. ..+++++|++ .+++.+++++... ++++++++|+.+.+ ++. .||+|++..
T Consensus 164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~-~~D~v~~~~ 240 (335)
T 2r3s_A 164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFEVD-YGN-DYDLVLLPN 240 (335)
T ss_dssp CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTTSC-CCS-CEEEEEEES
T ss_pred CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEecccccCC-CCC-CCcEEEEcc
Confidence 566799999999999999999873 4589999999 9999999987432 26999999998865 544 499999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++||+ ++++..+++++++++|+|||++++.+...+
T Consensus 241 ~l~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 275 (335)
T 2r3s_A 241 FLHHF-----DVATCEQLLRKIKTALAVEGKVIVFDFIPN 275 (335)
T ss_dssp CGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEECCCC
T ss_pred hhccC-----CHHHHHHHHHHHHHhCCCCcEEEEEeecCC
Confidence 99999 777889999999999999999999987654
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-14 Score=124.80 Aligned_cols=106 Identities=18% Similarity=0.203 Sum_probs=88.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
..++.+|||+|||+|.++..+++.|..+|+++|+| .|++.++++++.. ++++++++|+.+++ ++ ++||+|++..
T Consensus 61 ~~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~-~~~D~Iv~~~ 137 (376)
T 3r0q_C 61 HFEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDIS-LP-EKVDVIISEW 137 (376)
T ss_dssp TTTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCC-CS-SCEEEEEECC
T ss_pred cCCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcC-cC-CcceEEEEcC
Confidence 35677999999999999999999987799999999 9999999987542 35899999999987 55 7899999977
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.+++ .....+..++..++++|+|||.+++..
T Consensus 138 ~~~~l----~~e~~~~~~l~~~~~~LkpgG~li~~~ 169 (376)
T 3r0q_C 138 MGYFL----LRESMFDSVISARDRWLKPTGVMYPSH 169 (376)
T ss_dssp CBTTB----TTTCTHHHHHHHHHHHEEEEEEEESSE
T ss_pred hhhcc----cchHHHHHHHHHHHhhCCCCeEEEEec
Confidence 65554 233568889999999999999987643
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-14 Score=115.58 Aligned_cols=114 Identities=17% Similarity=0.172 Sum_probs=85.5
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC-CCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF-FEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~-~~~~~~D~v~~~~ 123 (252)
.++.+|||+|||+|.++..++... ..+++|+|+|+.+++.|+++... .++++++++|+.+++. +++++||.|+++.
T Consensus 37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~~~~ 116 (213)
T 2fca_A 37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNF 116 (213)
T ss_dssp SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEES
T ss_pred CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhcCcCCcCEEEEEC
Confidence 356799999999999999999873 45899999999999999998753 3479999999987532 4567899998764
Q ss_pred chhhhcCC-CCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCG-TNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~-~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+..+.... .........+++++.++|+|||.+++.+..
T Consensus 117 ~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td~ 155 (213)
T 2fca_A 117 SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTDN 155 (213)
T ss_dssp CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeCC
Confidence 32221000 000001367899999999999999988744
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-15 Score=133.39 Aligned_cols=115 Identities=17% Similarity=0.282 Sum_probs=92.2
Q ss_pred HHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCC-CCCCCeeEE
Q 025475 43 VRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSF-FEDESFDAV 119 (252)
Q Consensus 43 ~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~-~~~~~~D~v 119 (252)
+.+.+.++.+|||||||.|.++..+++.|. +|+|||+++.+|+.|+.+....+ ++++.++++.++.. ..+++||+|
T Consensus 60 ~~~~~~~~~~vLDvGCG~G~~~~~la~~ga-~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~fD~v 138 (569)
T 4azs_A 60 LSRALGRPLNVLDLGCAQGFFSLSLASKGA-TIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAALEEGEFDLA 138 (569)
T ss_dssp HHHHHTSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHCCTTSCSEE
T ss_pred HHhhcCCCCeEEEECCCCcHHHHHHHhCCC-EEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhccCCCccEE
Confidence 344455677999999999999999999987 89999999999999999886543 68999999988731 456789999
Q ss_pred EeccchhhhcCCCCChhhHH--HHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 120 IDKGTLDSLMCGTNAPISAS--QMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~--~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
+|..+++|+ .++. ..+..+.+.|+++|..++........
T Consensus 139 ~~~e~~ehv-------~~~~~~~~~~~~~~tl~~~~~~~~~~~~~~e~ 179 (569)
T 4azs_A 139 IGLSVFHHI-------VHLHGIDEVKRLLSRLADVTQAVILELAVKEE 179 (569)
T ss_dssp EEESCHHHH-------HHHHCHHHHHHHHHHHHHHSSEEEEECCCTTS
T ss_pred EECcchhcC-------CCHHHHHHHHHHHHHhccccceeeEEeccccc
Confidence 999999999 4443 33556778888888877777654443
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.55 E-value=2.9e-14 Score=122.58 Aligned_cols=120 Identities=18% Similarity=0.278 Sum_probs=91.8
Q ss_pred HHHHHhhCC--CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-----CCeEEEccccCCCCC
Q 025475 40 RPFVRKYIP--TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-----QLKYLQMDVRDMSFF 111 (252)
Q Consensus 40 ~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~-----~v~~~~~d~~~~~~~ 111 (252)
.+++...++ ++.+|||+|||+|.++..+++.+ ..+|+++|+|+.+++.+++++...+ +++++..|+.+. +
T Consensus 211 ~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~~--~ 288 (375)
T 4dcm_A 211 ARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG--V 288 (375)
T ss_dssp HHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTTT--C
T ss_pred HHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhcc--C
Confidence 344555544 34699999999999999999985 5699999999999999999875422 477899999884 5
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++++||+|+++.++|+... ........+++++.++|+|||.++++.....
T Consensus 289 ~~~~fD~Ii~nppfh~~~~--~~~~~~~~~l~~~~~~LkpgG~l~iv~n~~~ 338 (375)
T 4dcm_A 289 EPFRFNAVLCNPPFHQQHA--LTDNVAWEMFHHARRCLKINGELYIVANRHL 338 (375)
T ss_dssp CTTCEEEEEECCCC---------CCHHHHHHHHHHHHEEEEEEEEEEEETTS
T ss_pred CCCCeeEEEECCCcccCcc--cCHHHHHHHHHHHHHhCCCCcEEEEEEECCc
Confidence 6778999999999886300 1224456789999999999999999875543
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-14 Score=123.19 Aligned_cols=109 Identities=17% Similarity=0.274 Sum_probs=92.5
Q ss_pred CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
+.+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++.... ++++++.+|+.+.+.+..+.||+|++..++
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~vl 258 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNFEGGAADVVMLNDCL 258 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGGTTCCEEEEEEESCG
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCcccCCCCccEEEEeccc
Confidence 6799999999999999999874 458999999 88999999887542 269999999987642245569999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
||+ ++++...++++++++|+|||.+++.+...+.
T Consensus 259 h~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 292 (352)
T 3mcz_A 259 HYF-----DAREAREVIGHAAGLVKPGGALLILTMTMND 292 (352)
T ss_dssp GGS-----CHHHHHHHHHHHHHTEEEEEEEEEEEECCCT
T ss_pred ccC-----CHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 999 6677899999999999999999999865443
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4e-14 Score=121.65 Aligned_cols=108 Identities=11% Similarity=0.089 Sum_probs=91.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++++.. .++++++.+|+.+. .+. .||+|++..
T Consensus 201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~--~p~-~~D~v~~~~ 276 (369)
T 3gwz_A 201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFET--IPD-GADVYLIKH 276 (369)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTC--CCS-SCSEEEEES
T ss_pred ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCC--CCC-CceEEEhhh
Confidence 456799999999999999999874 458999999 9999999998753 24799999999843 444 799999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
++|++ +++...+++++++++|+|||++++.+...+.
T Consensus 277 vlh~~-----~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~~ 312 (369)
T 3gwz_A 277 VLHDW-----DDDDVVRILRRIATAMKPDSRLLVIDNLIDE 312 (369)
T ss_dssp CGGGS-----CHHHHHHHHHHHHTTCCTTCEEEEEEEBCCS
T ss_pred hhccC-----CHHHHHHHHHHHHHHcCCCCEEEEEEeccCC
Confidence 99999 6666779999999999999999998865443
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.6e-15 Score=118.13 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=84.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCC---CCCeeEEEe
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFE---DESFDAVID 121 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~---~~~~D~v~~ 121 (252)
+++.+|||+|||+|..+..++.. ...+|+++|+|+.+++.++++... ..+++++++|+.+++ .. .++||+|++
T Consensus 69 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~~~~fD~V~~ 147 (240)
T 1xdz_A 69 NQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFG-QRKDVRESYDIVTA 147 (240)
T ss_dssp GGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHT-TCTTTTTCEEEEEE
T ss_pred CCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhc-ccccccCCccEEEE
Confidence 45679999999999999999864 245899999999999999998753 346999999998875 32 578999998
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.. + .+...+++.+.++|+|||.+++....
T Consensus 148 ~~----~-------~~~~~~l~~~~~~LkpgG~l~~~~g~ 176 (240)
T 1xdz_A 148 RA----V-------ARLSVLSELCLPLVKKNGLFVALKAA 176 (240)
T ss_dssp EC----C-------SCHHHHHHHHGGGEEEEEEEEEEECC
T ss_pred ec----c-------CCHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 65 3 56788999999999999999887543
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-14 Score=110.57 Aligned_cols=102 Identities=13% Similarity=0.092 Sum_probs=84.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CC-CCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IP-QLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||+|.++..+++. ..+|+++|+++.+++.|+++++. .+ +++++++|+.+.. ....+||+|++..
T Consensus 53 ~~~~~~vLDlGcG~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~-~~~~~~D~v~~~~ 130 (204)
T 3njr_A 53 PRRGELLWDIGGGSGSVSVEWCLA-GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAAL-ADLPLPEAVFIGG 130 (204)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHT-TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGG-TTSCCCSEEEECS
T ss_pred CCCCCEEEEecCCCCHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhc-ccCCCCCEEEECC
Confidence 456779999999999999999998 45999999999999999998743 33 7999999998843 2335799999865
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.+ +.. +++++.++|+|||.+++.....
T Consensus 131 ~~-----------~~~-~l~~~~~~LkpgG~lv~~~~~~ 157 (204)
T 3njr_A 131 GG-----------SQA-LYDRLWEWLAPGTRIVANAVTL 157 (204)
T ss_dssp CC-----------CHH-HHHHHHHHSCTTCEEEEEECSH
T ss_pred cc-----------cHH-HHHHHHHhcCCCcEEEEEecCc
Confidence 32 344 8999999999999999987653
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=3.6e-14 Score=122.03 Aligned_cols=105 Identities=17% Similarity=0.184 Sum_probs=89.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
.+++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++++... ++++++++|+.+. ++. .||+|++.
T Consensus 180 ~~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~D~v~~~ 255 (374)
T 1qzz_A 180 WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP--LPV-TADVVLLS 255 (374)
T ss_dssp CTTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC--CSC-CEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCc--CCC-CCCEEEEe
Confidence 3466799999999999999999874 458999999 99999999987532 2799999999763 333 49999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.++||+ ++....+++++++++|+|||++++.+.
T Consensus 256 ~vl~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~ 288 (374)
T 1qzz_A 256 FVLLNW-----SDEDALTILRGCVRALEPGGRLLVLDR 288 (374)
T ss_dssp SCGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred ccccCC-----CHHHHHHHHHHHHHhcCCCcEEEEEec
Confidence 999999 556667999999999999999999887
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.54 E-value=3e-14 Score=113.08 Aligned_cols=135 Identities=12% Similarity=0.030 Sum_probs=97.1
Q ss_pred CChhhHHHHhccCCCceeeec--cchhhHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHH
Q 025475 14 GDALYWNARYVQEGGSFDWYQ--RYSALRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDM 87 (252)
Q Consensus 14 ~~~~~w~~~y~~~~~~~~~~~--~~~~l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~ 87 (252)
-...+|+..|......+.... ..+.+...+... ..++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.
T Consensus 38 ~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~ 117 (215)
T 2yxe_A 38 LPEHLKEYAYVDTPLEIGYGQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEK 117 (215)
T ss_dssp SCGGGGGGTTSCSCEEEETTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHH
T ss_pred CCchhhhhcccCCCccCCCCcEeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHH
Confidence 344566666664433222111 112233333333 4567799999999999999999874 2599999999999999
Q ss_pred HHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 88 MKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 88 a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+++++.. .++++++++|+.... ...++||+|++..+++|+ . +++.++|+|||.+++.....
T Consensus 118 a~~~~~~~~~~~v~~~~~d~~~~~-~~~~~fD~v~~~~~~~~~-------~------~~~~~~L~pgG~lv~~~~~~ 180 (215)
T 2yxe_A 118 AERTLRKLGYDNVIVIVGDGTLGY-EPLAPYDRIYTTAAGPKI-------P------EPLIRQLKDGGKLLMPVGRY 180 (215)
T ss_dssp HHHHHHHHTCTTEEEEESCGGGCC-GGGCCEEEEEESSBBSSC-------C------HHHHHTEEEEEEEEEEESSS
T ss_pred HHHHHHHcCCCCeEEEECCcccCC-CCCCCeeEEEECCchHHH-------H------HHHHHHcCCCcEEEEEECCC
Confidence 9998743 346899999986543 235689999999999988 2 47899999999999987544
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-14 Score=111.10 Aligned_cols=108 Identities=18% Similarity=0.242 Sum_probs=82.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCC-CC--CCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMS-FF--EDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~-~~--~~~~~D~v~~~ 122 (252)
++++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...+ +++++++|+.+.. .. ..++||+|+++
T Consensus 39 ~~~~~~vLD~GcG~G~~~~~l~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~~~ 117 (171)
T 1ws6_A 39 YPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGERFTVAFMA 117 (171)
T ss_dssp CTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTCCEEEEEEC
T ss_pred ccCCCeEEEeCCCcCHHHHHHHHCCC-eEEEEeCCHHHHHHHHHHHHHcCCceEEEeccHHHHHHhhhccCCceEEEEEC
Confidence 44677999999999999999999876 59999999999999999875433 7899999987742 11 13479999998
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.+++ - ..+...+.+.+ .++|+|||.+++.....
T Consensus 118 ~~~~-~-----~~~~~~~~~~~-~~~L~~gG~~~~~~~~~ 150 (171)
T 1ws6_A 118 PPYA-M-----DLAALFGELLA-SGLVEAGGLYVLQHPKD 150 (171)
T ss_dssp CCTT-S-----CTTHHHHHHHH-HTCEEEEEEEEEEEETT
T ss_pred CCCc-h-----hHHHHHHHHHh-hcccCCCcEEEEEeCCc
Confidence 8764 2 11333333333 59999999999877544
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=109.87 Aligned_cols=103 Identities=18% Similarity=0.278 Sum_probs=86.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCC-CCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFED-ESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~-~~~D~v~~~ 122 (252)
..++.+|||+|||+|.++..++..+ .+++++|+++.+++.+++++... +++++.++|+.+. ++. ++||+|++.
T Consensus 31 ~~~~~~vldiG~G~G~~~~~l~~~~-~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~--~~~~~~~D~v~~~ 107 (192)
T 1l3i_A 31 PGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA--LCKIPDIDIAVVG 107 (192)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH--HTTSCCEEEEEES
T ss_pred CCCCCEEEEECCCCCHHHHHHHHhc-CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh--cccCCCCCEEEEC
Confidence 4567799999999999999999987 69999999999999999987532 4789999998772 222 589999998
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.+++++ ..+++++.++|+|||.+++..+..
T Consensus 108 ~~~~~~----------~~~l~~~~~~l~~gG~l~~~~~~~ 137 (192)
T 1l3i_A 108 GSGGEL----------QEILRIIKDKLKPGGRIIVTAILL 137 (192)
T ss_dssp CCTTCH----------HHHHHHHHHTEEEEEEEEEEECBH
T ss_pred CchHHH----------HHHHHHHHHhcCCCcEEEEEecCc
Confidence 776554 778999999999999999987653
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.2e-14 Score=114.44 Aligned_cols=104 Identities=13% Similarity=0.134 Sum_probs=83.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC--CCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--FFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~--~~~~~~~D~v~~~ 122 (252)
+.++.+|||+|||+|.++..+++. + ..+++++|+|+.+++.+.++....++++++++|+.+.. ....++||+|+++
T Consensus 75 ~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~~~v~~~~~d~~~~~~~~~~~~~~D~V~~~ 154 (233)
T 2ipx_A 75 IKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKRTNIIPVIEDARHPHKYRMLIAMVDVIFAD 154 (233)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHCTTEEEECSCTTCGGGGGGGCCCEEEEEEC
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhccCCeEEEEcccCChhhhcccCCcEEEEEEc
Confidence 456779999999999999999987 2 45899999999888777776654468999999998732 1346789999986
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+ .+.....++.++.++|+|||.+++..
T Consensus 155 ~~---------~~~~~~~~~~~~~~~LkpgG~l~i~~ 182 (233)
T 2ipx_A 155 VA---------QPDQTRIVALNAHTFLRNGGHFVISI 182 (233)
T ss_dssp CC---------CTTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC---------CccHHHHHHHHHHHHcCCCeEEEEEE
Confidence 44 22455667889999999999999854
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-14 Score=120.80 Aligned_cols=109 Identities=19% Similarity=0.223 Sum_probs=92.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
.+++.+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++++... ++++++.+|+.+.+ +++ +|+|++.
T Consensus 188 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-~~~--~D~v~~~ 263 (359)
T 1x19_A 188 LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES-YPE--ADAVLFC 263 (359)
T ss_dssp CTTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSC-CCC--CSEEEEE
T ss_pred CCCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCC-CCC--CCEEEEe
Confidence 3566799999999999999999874 458999999 99999999987532 25999999998875 543 3999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
.++|++ ++++..+++++++++|+|||.+++.++..+.
T Consensus 264 ~vlh~~-----~d~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 300 (359)
T 1x19_A 264 RILYSA-----NEQLSTIMCKKAFDAMRSGGRLLILDMVIDD 300 (359)
T ss_dssp SCGGGS-----CHHHHHHHHHHHHTTCCTTCEEEEEEECCCC
T ss_pred chhccC-----CHHHHHHHHHHHHHhcCCCCEEEEEecccCC
Confidence 999999 6666999999999999999999998866543
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.9e-14 Score=121.36 Aligned_cols=118 Identities=18% Similarity=0.260 Sum_probs=92.4
Q ss_pred HHHHHhhC--CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCC
Q 025475 40 RPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 40 ~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~ 115 (252)
.+.+...+ .++.+|||+|||+|.++..+++.+ ..+++++|+|+.+++.+++++...+ .++++.+|+.+.. +++
T Consensus 185 ~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~~d~~~~~---~~~ 261 (343)
T 2pjd_A 185 SQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAANGVEGEVFASNVFSEV---KGR 261 (343)
T ss_dssp HHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHHTTCCCEEEECSTTTTC---CSC
T ss_pred HHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCEEEEccccccc---cCC
Confidence 34444444 245699999999999999999886 3489999999999999999885432 4678888887643 568
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
||+|+++.++|+... .+......++++++++|+|||.+++.....
T Consensus 262 fD~Iv~~~~~~~g~~--~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~ 306 (343)
T 2pjd_A 262 FDMIISNPPFHDGMQ--TSLDAAQTLIRGAVRHLNSGGELRIVANAF 306 (343)
T ss_dssp EEEEEECCCCCSSSH--HHHHHHHHHHHHHGGGEEEEEEEEEEEETT
T ss_pred eeEEEECCCcccCcc--CCHHHHHHHHHHHHHhCCCCcEEEEEEcCC
Confidence 999999999885100 023678999999999999999999987654
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.53 E-value=3.1e-14 Score=120.48 Aligned_cols=103 Identities=23% Similarity=0.278 Sum_probs=86.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++.|..+|+++|++ .+++.|+++++.. ++++++++|+.+.+ ++.++||+|++..+
T Consensus 37 ~~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~~~D~Ivs~~~ 114 (328)
T 1g6q_1 37 FKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWM 114 (328)
T ss_dssp HTTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCC
T ss_pred cCCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhcc-CCCCcccEEEEeCc
Confidence 3567999999999999999999886699999999 5999999887532 36899999999987 66678999999865
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
.+++ .....+..++.++.++|+|||.++
T Consensus 115 ~~~l----~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 115 GYFL----LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp BTTB----STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred hhhc----ccHHHHHHHHHHHHhhcCCCeEEE
Confidence 4443 123667889999999999999987
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.53 E-value=4.3e-14 Score=108.56 Aligned_cols=106 Identities=11% Similarity=0.093 Sum_probs=83.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--C-CCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--P-QLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~-~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||+|.++..++... ..+++++|+++.+++.+++++... + ++ ++++|..+..+...++||+|++.
T Consensus 23 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~~d~~~~~~~~~~~~D~i~~~ 101 (178)
T 3hm2_A 23 PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRI-AVQQGAPRAFDDVPDNPDVIFIG 101 (178)
T ss_dssp CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEECCTTGGGGGCCSCCSEEEEC
T ss_pred ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEecchHhhhhccCCCCCEEEEC
Confidence 3466799999999999999999873 468999999999999999987543 2 57 77888755321222789999998
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
.++++ ..+++++.++|+|||.+++.....+.
T Consensus 102 ~~~~~-----------~~~l~~~~~~L~~gG~l~~~~~~~~~ 132 (178)
T 3hm2_A 102 GGLTA-----------PGVFAAAWKRLPVGGRLVANAVTVES 132 (178)
T ss_dssp C-TTC-----------TTHHHHHHHTCCTTCEEEEEECSHHH
T ss_pred CcccH-----------HHHHHHHHHhcCCCCEEEEEeecccc
Confidence 77664 45789999999999999998866443
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.53 E-value=2.4e-14 Score=122.08 Aligned_cols=103 Identities=19% Similarity=0.230 Sum_probs=87.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++.+..+|+++|+|+ +++.++++++.. ++++++++|+.+.+ .+ ++||+|++..+
T Consensus 49 ~~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~-~~-~~~D~Ivs~~~ 125 (348)
T 2y1w_A 49 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP-EQVDIIISEPM 125 (348)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-CS-SCEEEEEECCC
T ss_pred CCcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC-CC-CceeEEEEeCc
Confidence 46779999999999999999998767999999996 888888887532 47999999999876 44 57999999998
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
++|+ ..+.....+.+++++|+|||.+++.
T Consensus 126 ~~~~-----~~~~~~~~l~~~~~~LkpgG~li~~ 154 (348)
T 2y1w_A 126 GYML-----FNERMLESYLHAKKYLKPSGNMFPT 154 (348)
T ss_dssp BTTB-----TTTSHHHHHHHGGGGEEEEEEEESC
T ss_pred hhcC-----ChHHHHHHHHHHHhhcCCCeEEEEe
Confidence 8887 4466777888999999999999854
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-13 Score=114.39 Aligned_cols=114 Identities=16% Similarity=0.144 Sum_probs=89.1
Q ss_pred hHHHHHhhC--CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeC-CHHHHHHHHHhh-----cCC-------CCCeEEEc
Q 025475 39 LRPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDI-SSVAIDMMKMKY-----EEI-------PQLKYLQM 103 (252)
Q Consensus 39 l~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~-s~~~i~~a~~~~-----~~~-------~~v~~~~~ 103 (252)
+.+.+.... .++.+|||+|||+|.++..++..+..+|+++|+ ++.+++.++++. ... +++++...
T Consensus 67 l~~~l~~~~~~~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~ 146 (281)
T 3bzb_A 67 LADTLCWQPELIAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPY 146 (281)
T ss_dssp HHHHHHHCGGGTTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEEC
T ss_pred HHHHHHhcchhcCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEe
Confidence 444444432 466799999999999999999987668999999 899999999987 322 25777766
Q ss_pred cccCCC-CC----CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHccc---C--CcEEEEEE
Q 025475 104 DVRDMS-FF----EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLK---P--GGIYMLIT 159 (252)
Q Consensus 104 d~~~~~-~~----~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~---~--gG~l~i~~ 159 (252)
+..+.. .+ ..++||+|++..+++|. .+...+++.+.++|+ | ||.++++.
T Consensus 147 ~~~~~~~~~~~~~~~~~fD~Ii~~dvl~~~-------~~~~~ll~~l~~~Lk~~~p~~gG~l~v~~ 205 (281)
T 3bzb_A 147 RWGDSPDSLQRCTGLQRFQVVLLADLLSFH-------QAHDALLRSVKMLLALPANDPTAVALVTF 205 (281)
T ss_dssp CTTSCTHHHHHHHSCSSBSEEEEESCCSCG-------GGHHHHHHHHHHHBCCTTTCTTCEEEEEE
T ss_pred cCCCccHHHHhhccCCCCCEEEEeCcccCh-------HHHHHHHHHHHHHhcccCCCCCCEEEEEE
Confidence 654431 11 35789999999999988 889999999999999 9 99877654
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-15 Score=119.25 Aligned_cols=111 Identities=14% Similarity=0.170 Sum_probs=69.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCC-----CCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFED-----ESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~-----~~~D~v~ 120 (252)
.++.+|||+|||+|.++..+++.+ ..+++++|+++.+++.+++++...+ +++++++|+.+. +.+ ++||+|+
T Consensus 29 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~--~~~~~~~~~~fD~i~ 106 (215)
T 4dzr_A 29 PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAERFGAVVDWAAADGIEW--LIERAERGRPWHAIV 106 (215)
T ss_dssp CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------CCHHHHHHH--HHHHHHTTCCBSEEE
T ss_pred CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhCCceEEEEcchHhh--hhhhhhccCcccEEE
Confidence 567799999999999999999985 4489999999999999999886533 688889998873 444 7899999
Q ss_pred eccchhhhcCC-------------------CCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCG-------------------TNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~-------------------~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
++.++++.... .........+++++.++|+|||++++.+.
T Consensus 107 ~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~ 165 (215)
T 4dzr_A 107 SNPPYIPTGEIDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFLEV 165 (215)
T ss_dssp ECCCCCC------------------------CTTHHHHHHHTCCGGGBCSSSEEEEEEC
T ss_pred ECCCCCCCccccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEEEE
Confidence 98776543000 00011127888999999999999555443
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.8e-14 Score=113.40 Aligned_cols=102 Identities=19% Similarity=0.231 Sum_probs=85.0
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC-------CCCCeEEEccccCCCCCCCCCe
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE-------IPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
.+.++.+|||+|||+|..+..+++. + ..+++++|+++.+++.+++++.. ..+++++++|+.... ...++|
T Consensus 74 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~~~~~f 152 (226)
T 1i1n_A 74 QLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-AEEAPY 152 (226)
T ss_dssp TSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-GGGCCE
T ss_pred hCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCc-ccCCCc
Confidence 3567789999999999999999887 3 24999999999999999988754 347899999998654 446689
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+|++..+++++ ++++.++|+|||.+++....
T Consensus 153 D~i~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~ 184 (226)
T 1i1n_A 153 DAIHVGAAAPVV-------------PQALIDQLKPGGRLILPVGP 184 (226)
T ss_dssp EEEEECSBBSSC-------------CHHHHHTEEEEEEEEEEESC
T ss_pred CEEEECCchHHH-------------HHHHHHhcCCCcEEEEEEec
Confidence 999999888776 35788999999999998754
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.52 E-value=1.6e-13 Score=108.12 Aligned_cols=109 Identities=17% Similarity=0.259 Sum_probs=87.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
++.+|||+|||+|..+..++.. +..+++++|+++.+++.++++.... .+++++++|+.+.+ +.++||+|+++.
T Consensus 65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--~~~~~D~i~~~~-- 140 (207)
T 1jsx_A 65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--SEPPFDGVISRA-- 140 (207)
T ss_dssp CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC--CCSCEEEEECSC--
T ss_pred CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCC--ccCCcCEEEEec--
Confidence 4679999999999999999986 3459999999999999999987543 35899999998875 456899999753
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
+ .+...+++.+.++|+|||.+++............+
T Consensus 141 --~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 176 (207)
T 1jsx_A 141 --F-------ASLNDMVSWCHHLPGEQGRFYALKGQMPEDEIALL 176 (207)
T ss_dssp --S-------SSHHHHHHHHTTSEEEEEEEEEEESSCCHHHHHTS
T ss_pred --c-------CCHHHHHHHHHHhcCCCcEEEEEeCCCchHHHHHH
Confidence 2 45678999999999999999987654444444444
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-13 Score=109.61 Aligned_cols=120 Identities=17% Similarity=0.156 Sum_probs=85.0
Q ss_pred eeeccchhhHHHHHhh-----CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc
Q 025475 31 DWYQRYSALRPFVRKY-----IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM 103 (252)
Q Consensus 31 ~~~~~~~~l~~~~~~~-----~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~ 103 (252)
.|-...+.+...+... +.++.+|||+|||+|..+..+++. + .++|+++|+++.+++.+.+......++.++++
T Consensus 53 ~w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r~nv~~i~~ 132 (232)
T 3id6_C 53 EWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRRPNIFPLLA 132 (232)
T ss_dssp ECCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHCTTEEEEEC
T ss_pred hhchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCeEEEEc
Confidence 3433334444444333 457889999999999999999886 3 56999999999987555444433368999999
Q ss_pred cccCCCC--CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 104 DVRDMSF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 104 d~~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+..... ...++||+|+++.+. +.....+...+.++|||||.++++.
T Consensus 133 Da~~~~~~~~~~~~~D~I~~d~a~---------~~~~~il~~~~~~~LkpGG~lvisi 181 (232)
T 3id6_C 133 DARFPQSYKSVVENVDVLYVDIAQ---------PDQTDIAIYNAKFFLKVNGDMLLVI 181 (232)
T ss_dssp CTTCGGGTTTTCCCEEEEEECCCC---------TTHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ccccchhhhccccceEEEEecCCC---------hhHHHHHHHHHHHhCCCCeEEEEEE
Confidence 9986531 224689999987542 1344445566777999999999875
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8.5e-14 Score=119.09 Aligned_cols=107 Identities=16% Similarity=0.204 Sum_probs=90.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+++.+|||+|||+|.++..+++.+ ..+++++|+ +.+++.+++++... ++++++++|+.+. ++. .||+|++..
T Consensus 182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~-~~D~v~~~~ 257 (360)
T 1tw3_A 182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP--LPR-KADAIILSF 257 (360)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC--CSS-CEEEEEEES
T ss_pred ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCCC--CCC-CccEEEEcc
Confidence 456799999999999999999875 458999999 99999999987432 2799999999863 333 499999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC-Ch
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG-DP 163 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~-~~ 163 (252)
++||+ ++++..+++++++++|+|||.+++.+.. .+
T Consensus 258 vl~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~ 293 (360)
T 1tw3_A 258 VLLNW-----PDHDAVRILTRCAEALEPGGRILIHERDDLH 293 (360)
T ss_dssp CGGGS-----CHHHHHHHHHHHHHTEEEEEEEEEEECCBCG
T ss_pred cccCC-----CHHHHHHHHHHHHHhcCCCcEEEEEEEeccC
Confidence 99999 6666689999999999999999999876 44
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=3.9e-14 Score=115.24 Aligned_cols=108 Identities=12% Similarity=0.114 Sum_probs=86.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC--CCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF--FEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~--~~~~~~D~v~~~ 122 (252)
.++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++... ..+++++++|+.+++. ...++||+|++.
T Consensus 79 ~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~s~ 158 (249)
T 3g89_A 79 QGPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREAGHREAYARAVAR 158 (249)
T ss_dssp CSSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTSTTTTTCEEEEEEE
T ss_pred CCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhcccccCCCceEEEEC
Confidence 35679999999999999999876 356999999999999999998753 3469999999988752 124789999986
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 166 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~ 166 (252)
.+ .+...+++.+.++|+|||++++.....+...
T Consensus 159 a~-----------~~~~~ll~~~~~~LkpgG~l~~~~g~~~~~e 191 (249)
T 3g89_A 159 AV-----------APLCVLSELLLPFLEVGGAAVAMKGPRVEEE 191 (249)
T ss_dssp SS-----------CCHHHHHHHHGGGEEEEEEEEEEECSCCHHH
T ss_pred Cc-----------CCHHHHHHHHHHHcCCCeEEEEEeCCCcHHH
Confidence 42 4557889999999999999988764433333
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.51 E-value=2e-13 Score=108.89 Aligned_cols=124 Identities=15% Similarity=0.090 Sum_probs=99.7
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCC
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFE 112 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~ 112 (252)
+.-.+.+...++++.+|+|+|||+|.++..++..+ ..+|+++|+++.+++.|+++++..+ ++++.++|..+.. .+
T Consensus 9 s~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~-~~ 87 (230)
T 3lec_A 9 SKRLQKVANYVPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF-EE 87 (230)
T ss_dssp CHHHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-CG
T ss_pred HHHHHHHHHhCCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc-cc
Confidence 34456778888889999999999999999999987 5589999999999999999986432 6999999998875 33
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
.++||+|++.+..- .-...++....+.|+++|.++++.......-..++
T Consensus 88 ~~~~D~IviaGmGg---------~lI~~IL~~~~~~l~~~~~lIlqp~~~~~~lr~~L 136 (230)
T 3lec_A 88 ADNIDTITICGMGG---------RLIADILNNDIDKLQHVKTLVLQPNNREDDLRKWL 136 (230)
T ss_dssp GGCCCEEEEEEECH---------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHH
T ss_pred ccccCEEEEeCCch---------HHHHHHHHHHHHHhCcCCEEEEECCCChHHHHHHH
Confidence 34799988765432 34677899999999999999998876655444444
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=112.70 Aligned_cols=107 Identities=26% Similarity=0.435 Sum_probs=87.5
Q ss_pred hHHHHHhhC-CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCe
Q 025475 39 LRPFVRKYI-PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 39 l~~~~~~~~-~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
+...+...+ .++.+|||+|||+|.++..+++.. ..+++++|+|+.+++.++++. +++.++++|+.+++ +.+++|
T Consensus 74 ~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~d~~~~~-~~~~~f 149 (269)
T 1p91_A 74 IVAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLP-FSDTSM 149 (269)
T ss_dssp HHHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCS-BCTTCE
T ss_pred HHHHHHHhcCCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC---CCcEEEEcchhhCC-CCCCce
Confidence 444555544 567799999999999999999872 348999999999999999875 46899999999887 777899
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+|++..+. ..++++.++|+|||.+++.++...
T Consensus 150 D~v~~~~~~--------------~~l~~~~~~L~pgG~l~~~~~~~~ 182 (269)
T 1p91_A 150 DAIIRIYAP--------------CKAEELARVVKPGGWVITATPGPR 182 (269)
T ss_dssp EEEEEESCC--------------CCHHHHHHHEEEEEEEEEEEECTT
T ss_pred eEEEEeCCh--------------hhHHHHHHhcCCCcEEEEEEcCHH
Confidence 999986441 247889999999999999886643
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.5e-13 Score=108.73 Aligned_cols=103 Identities=18% Similarity=0.208 Sum_probs=83.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~ 122 (252)
+.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.++++....++++++++|+.+... ...++||+|++.
T Consensus 71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~ 150 (227)
T 1g8a_A 71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPILGDATKPEEYRALVPKVDVIFED 150 (227)
T ss_dssp CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEECCTTCGGGGTTTCCCEEEEEEC
T ss_pred CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhccCCCEEEEccCCCcchhhcccCCceEEEEC
Confidence 346779999999999999999977 3 369999999999999999988766789999999987421 123589999976
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
.+ .+.....++.++.++|+|||.+++.
T Consensus 151 ~~---------~~~~~~~~l~~~~~~LkpgG~l~~~ 177 (227)
T 1g8a_A 151 VA---------QPTQAKILIDNAEVYLKRGGYGMIA 177 (227)
T ss_dssp CC---------STTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CC---------CHhHHHHHHHHHHHhcCCCCEEEEE
Confidence 44 1234456699999999999999887
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.51 E-value=7.6e-14 Score=113.28 Aligned_cols=107 Identities=16% Similarity=0.198 Sum_probs=82.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc----------CCCCCeEEEccccCC-CC-CCC
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE----------EIPQLKYLQMDVRDM-SF-FED 113 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~----------~~~~v~~~~~d~~~~-~~-~~~ 113 (252)
++++.+|||+|||+|.++..++..+ ..+++|+|+|+.+++.+++++. ...+++++++|+.+. +. +..
T Consensus 47 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~ 126 (246)
T 2vdv_E 47 MTKKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEK 126 (246)
T ss_dssp BSCCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCT
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccc
Confidence 3466799999999999999999986 4489999999999999988763 335899999999873 21 456
Q ss_pred CCeeEEEeccchhhhcCCCCChhh--------HHHHHHHHHHcccCCcEEEEEEc
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPIS--------ASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++|.|++...-- .... ...+++++.++|+|||.+++.+.
T Consensus 127 ~~~d~v~~~~p~p-------~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~~td 174 (246)
T 2vdv_E 127 GQLSKMFFCFPDP-------HFKQRKHKARIITNTLLSEYAYVLKEGGVVYTITD 174 (246)
T ss_dssp TCEEEEEEESCCC-------C------CSSCCCHHHHHHHHHHEEEEEEEEEEES
T ss_pred cccCEEEEECCCc-------ccccchhHHhhccHHHHHHHHHHcCCCCEEEEEec
Confidence 7899998542211 1011 15799999999999999998663
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.51 E-value=6.3e-14 Score=113.96 Aligned_cols=112 Identities=10% Similarity=0.110 Sum_probs=85.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHc--C-CCcEEEEeCCHHHHHHHHHhhcCC---C---C----------------------
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD--G-YEDIVNIDISSVAIDMMKMKYEEI---P---Q---------------------- 97 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~--~-~~~v~~vD~s~~~i~~a~~~~~~~---~---~---------------------- 97 (252)
++.+|||+|||+|.++..++.. . ..+++|+|+|+.+++.|+.++... + +
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 130 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 130 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhhhhh
Confidence 4569999999999999999876 2 348999999999999999876543 1 1
Q ss_pred ---Ce-------------EEEccccCCCCC----CCCCeeEEEeccchhhhcCC--CCChhhHHHHHHHHHHcccCCcEE
Q 025475 98 ---LK-------------YLQMDVRDMSFF----EDESFDAVIDKGTLDSLMCG--TNAPISASQMLGEVSRLLKPGGIY 155 (252)
Q Consensus 98 ---v~-------------~~~~d~~~~~~~----~~~~~D~v~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~~gG~l 155 (252)
++ ++++|+.+.... ...+||+|+++.++.+.... .........++++++++|+|||++
T Consensus 131 ~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 210 (250)
T 1o9g_A 131 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 210 (250)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred hhhhhhhccccccccccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHHhcCCCcEE
Confidence 56 999998875311 34489999999887764100 011366789999999999999999
Q ss_pred EEEEc
Q 025475 156 MLITY 160 (252)
Q Consensus 156 ~i~~~ 160 (252)
+++..
T Consensus 211 ~~~~~ 215 (250)
T 1o9g_A 211 AVTDR 215 (250)
T ss_dssp EEEES
T ss_pred EEeCc
Confidence 98553
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.2e-14 Score=113.78 Aligned_cols=102 Identities=13% Similarity=0.178 Sum_probs=83.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCC-CCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF-FEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~-~~~~~~D~v~~~ 122 (252)
.++.+|||+|||+|..+..++... ..+++++|+++.+++.|+++++.. ++++++++|+.+... ..+++||+|++.
T Consensus 70 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~~ 149 (232)
T 3ntv_A 70 NNVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVNDKVYDMIFID 149 (232)
T ss_dssp HTCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHTTSCEEEEEEE
T ss_pred cCCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhccCCccEEEEc
Confidence 356799999999999999999853 569999999999999999988543 379999999987642 225789999976
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.. ......+++++.++|+|||.+++-.
T Consensus 150 ~~----------~~~~~~~l~~~~~~LkpgG~lv~d~ 176 (232)
T 3ntv_A 150 AA----------KAQSKKFFEIYTPLLKHQGLVITDN 176 (232)
T ss_dssp TT----------SSSHHHHHHHHGGGEEEEEEEEEEC
T ss_pred Cc----------HHHHHHHHHHHHHhcCCCeEEEEee
Confidence 43 2456779999999999999998844
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.8e-14 Score=120.44 Aligned_cols=125 Identities=13% Similarity=0.047 Sum_probs=92.7
Q ss_pred chhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCC
Q 025475 36 YSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 36 ~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~ 114 (252)
.......+....+++.+|||+|||+|.++..++..|. +|+++|+|+.+++.++++++..+ ..++.++|+.+......+
T Consensus 201 qr~~r~~l~~~~~~g~~VLDlg~GtG~~sl~~a~~ga-~V~avDis~~al~~a~~n~~~ng~~~~~~~~D~~~~l~~~~~ 279 (393)
T 4dmg_A 201 QRENRRLFEAMVRPGERVLDVYSYVGGFALRAARKGA-YALAVDKDLEALGVLDQAALRLGLRVDIRHGEALPTLRGLEG 279 (393)
T ss_dssp GHHHHHHHHTTCCTTCEEEEESCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHTCCCEEEESCHHHHHHTCCC
T ss_pred HHHHHHHHHHHhcCCCeEEEcccchhHHHHHHHHcCC-eEEEEECCHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHhcC
Confidence 3444566666666688999999999999999999876 49999999999999999885322 346778998875312234
Q ss_pred CeeEEEeccchhhhcCCC----CChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 115 SFDAVIDKGTLDSLMCGT----NAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.||+|+++.+...- +. ....+...++..+.++|+|||.+++.++...
T Consensus 280 ~fD~Ii~dpP~f~~--~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~~s~s~~ 330 (393)
T 4dmg_A 280 PFHHVLLDPPTLVK--RPEELPAMKRHLVDLVREALRLLAEEGFLWLSSCSYH 330 (393)
T ss_dssp CEEEEEECCCCCCS--SGGGHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred CCCEEEECCCcCCC--CHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 49999998664211 00 0014557889999999999999998876644
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.9e-14 Score=118.45 Aligned_cols=106 Identities=11% Similarity=0.141 Sum_probs=90.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++ .+|||+|||+|..+..+++.. ..+++++|+ +.+++.+++++.. .++++++.+|+.+ + ++ ++||+|++..
T Consensus 167 ~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~-~-~~-~~~D~v~~~~ 241 (334)
T 2ip2_A 167 RG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ-E-VP-SNGDIYLLSR 241 (334)
T ss_dssp TT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT-C-CC-SSCSEEEEES
T ss_pred CC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC-C-CC-CCCCEEEEch
Confidence 44 799999999999999999873 458999999 9999999988743 2479999999987 3 44 5799999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++||+ +++...+++++++++|+|||++++.+...+
T Consensus 242 vl~~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 276 (334)
T 2ip2_A 242 IIGDL-----DEAASLRLLGNCREAMAGDGRVVVIERTIS 276 (334)
T ss_dssp CGGGC-----CHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred hccCC-----CHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 99999 666777999999999999999999986543
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=6e-14 Score=120.50 Aligned_cols=102 Identities=18% Similarity=0.166 Sum_probs=86.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++.. ++++++.+|+.+ + ++.+ |+|++..++|
T Consensus 202 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~-~p~~--D~v~~~~vlh 272 (368)
T 3reo_A 202 EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPAF----SGVEHLGGDMFD-G-VPKG--DAIFIKWICH 272 (368)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----TTEEEEECCTTT-C-CCCC--SEEEEESCGG
T ss_pred cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhhc----CCCEEEecCCCC-C-CCCC--CEEEEechhh
Confidence 456799999999999999999874 458999999 8888776542 579999999987 4 5543 9999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++ ++++..+++++++++|+|||++++.+...+
T Consensus 273 ~~-----~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~ 304 (368)
T 3reo_A 273 DW-----SDEHCLKLLKNCYAALPDHGKVIVAEYILP 304 (368)
T ss_dssp GB-----CHHHHHHHHHHHHHHSCTTCEEEEEECCCC
T ss_pred cC-----CHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 99 777888999999999999999999987644
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-14 Score=112.81 Aligned_cols=106 Identities=14% Similarity=0.161 Sum_probs=86.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCC-CCCC----CCCeeE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFFE----DESFDA 118 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~-~~~~----~~~~D~ 118 (252)
++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.+++++... ++++++++|+.+. +... .++||+
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~fD~ 137 (221)
T 3u81_A 58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 137 (221)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTTSCCCCCSE
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHhcCCCceEE
Confidence 5679999999999999999985 2 459999999999999999987532 2599999998663 2122 268999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|++....++. .....++..+ ++|+|||.+++.+...
T Consensus 138 V~~d~~~~~~-------~~~~~~~~~~-~~LkpgG~lv~~~~~~ 173 (221)
T 3u81_A 138 VFLDHWKDRY-------LPDTLLLEKC-GLLRKGTVLLADNVIV 173 (221)
T ss_dssp EEECSCGGGH-------HHHHHHHHHT-TCCCTTCEEEESCCCC
T ss_pred EEEcCCcccc-------hHHHHHHHhc-cccCCCeEEEEeCCCC
Confidence 9999887777 6667788888 9999999999876544
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.3e-14 Score=113.92 Aligned_cols=115 Identities=12% Similarity=0.098 Sum_probs=81.2
Q ss_pred HHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCC-HHHHHHH---HHhhcC--CCCCeEEEccccCCCCCCCCC
Q 025475 43 VRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDIS-SVAIDMM---KMKYEE--IPQLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 43 ~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s-~~~i~~a---~~~~~~--~~~v~~~~~d~~~~~~~~~~~ 115 (252)
+.....++.+|||+|||+|.++..++... ..+|+|+|+| +.|++.| +++... .+++.++++|+.+++....+.
T Consensus 18 ~~~~~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l~~~~~d~ 97 (225)
T 3p2e_A 18 TEIIGQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESLPFELKNI 97 (225)
T ss_dssp HHHHTTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBCCGGGTTC
T ss_pred HHHhCCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHhhhhccCe
Confidence 33344567799999999999999998653 4589999999 7777776 665533 347999999999886222356
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|.|+++..+.+... ....+...++++++++|||||.+++..
T Consensus 98 v~~i~~~~~~~~~~~--~~~~~~~~~l~~~~r~LkpGG~l~i~~ 139 (225)
T 3p2e_A 98 ADSISILFPWGTLLE--YVIKPNRDILSNVADLAKKEAHFEFVT 139 (225)
T ss_dssp EEEEEEESCCHHHHH--HHHTTCHHHHHHHHTTEEEEEEEEEEE
T ss_pred EEEEEEeCCCcHHhh--hhhcchHHHHHHHHHhcCCCcEEEEEE
Confidence 777777654332100 000123568999999999999998844
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-13 Score=111.59 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=82.2
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCC-CCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFE-DESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~-~~~~D~v~~~~ 123 (252)
..++.+|||+|||+|.++..+++.+..+++++|+++.+++.+++++.. ..+++++++|+.. + ++ ..+||+|++..
T Consensus 89 ~~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~-~-~~~~~~fD~Ii~~~ 166 (235)
T 1jg1_A 89 LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSK-G-FPPKAPYDVIIVTA 166 (235)
T ss_dssp CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGG-C-CGGGCCEEEEEECS
T ss_pred CCCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEECCccc-C-CCCCCCccEEEECC
Confidence 456779999999999999999987425999999999999999998753 2468999999733 2 33 34599999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+++++ . +++.++|+|||.+++.....
T Consensus 167 ~~~~~-------~------~~~~~~L~pgG~lvi~~~~~ 192 (235)
T 1jg1_A 167 GAPKI-------P------EPLIEQLKIGGKLIIPVGSY 192 (235)
T ss_dssp BBSSC-------C------HHHHHTEEEEEEEEEEECSS
T ss_pred cHHHH-------H------HHHHHhcCCCcEEEEEEecC
Confidence 98887 2 36889999999999987544
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-13 Score=108.39 Aligned_cols=124 Identities=13% Similarity=0.031 Sum_probs=98.9
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCC
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFE 112 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~ 112 (252)
+.-.+.+...++++.+|||+|||+|.++..++..+ ..+++++|+++.+++.|+++++..+ ++++.++|..+.. .+
T Consensus 9 s~RL~~i~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~-~~ 87 (244)
T 3gnl_A 9 SKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI-EK 87 (244)
T ss_dssp CHHHHHHHTTCCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-CG
T ss_pred hHHHHHHHHhCCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc-Cc
Confidence 34456778888989999999999999999999987 5589999999999999999985432 5899999998865 33
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
..+||+|++.+..- .-...++....+.|+++|.++++.......-..++
T Consensus 88 ~~~~D~IviagmGg---------~lI~~IL~~~~~~L~~~~~lIlq~~~~~~~lr~~L 136 (244)
T 3gnl_A 88 KDAIDTIVIAGMGG---------TLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWS 136 (244)
T ss_dssp GGCCCEEEEEEECH---------HHHHHHHHHTGGGGTTCCEEEEEESSCHHHHHHHH
T ss_pred cccccEEEEeCCch---------HHHHHHHHHHHHHhCCCCEEEEEcCCChHHHHHHH
Confidence 33699998755422 44677899999999999999998876655444444
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7.9e-14 Score=119.58 Aligned_cols=102 Identities=17% Similarity=0.139 Sum_probs=87.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++.. ++++++.+|+.+ + ++.+ |+|++..++|
T Consensus 200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~D~~~-~-~p~~--D~v~~~~vlh 270 (364)
T 3p9c_A 200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQF----PGVTHVGGDMFK-E-VPSG--DTILMKWILH 270 (364)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----TTEEEEECCTTT-C-CCCC--SEEEEESCGG
T ss_pred cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhhc----CCeEEEeCCcCC-C-CCCC--CEEEehHHhc
Confidence 456799999999999999999873 458999999 8888776542 589999999988 4 5544 9999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++ ++++..+++++++++|+|||++++.+...+
T Consensus 271 ~~-----~d~~~~~~L~~~~~~L~pgG~l~i~e~~~~ 302 (364)
T 3p9c_A 271 DW-----SDQHCATLLKNCYDALPAHGKVVLVQCILP 302 (364)
T ss_dssp GS-----CHHHHHHHHHHHHHHSCTTCEEEEEECCBC
T ss_pred cC-----CHHHHHHHHHHHHHHcCCCCEEEEEEeccC
Confidence 99 778889999999999999999999987543
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-14 Score=113.37 Aligned_cols=104 Identities=18% Similarity=0.255 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHH----hh--cCCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKM----KY--EEIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~----~~--~~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
..++.+|||+|||+|.++..+++.+ ..+|+|+|+|+.|++.+.+ +. ...++++++++|+.+++ +.+++ |.|
T Consensus 25 ~~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~-~~~~~-d~v 102 (218)
T 3mq2_A 25 SQYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP-PLSGV-GEL 102 (218)
T ss_dssp TTSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC-SCCCE-EEE
T ss_pred ccCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC-CCCCC-CEE
Confidence 4567799999999999999999984 4699999999998885332 22 12347999999999987 66555 766
Q ss_pred Eecc---ch--hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKG---TL--DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~---~l--~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++.. .+ +|+ .+...++++++++|||||.+++..
T Consensus 103 ~~~~~~~~~~~~~~-------~~~~~~l~~~~~~LkpgG~l~~~~ 140 (218)
T 3mq2_A 103 HVLMPWGSLLRGVL-------GSSPEMLRGMAAVCRPGASFLVAL 140 (218)
T ss_dssp EEESCCHHHHHHHH-------TSSSHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEccchhhhhhhh-------ccHHHHHHHHHHHcCCCcEEEEEe
Confidence 6333 22 255 566899999999999999999854
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-14 Score=119.69 Aligned_cols=113 Identities=14% Similarity=0.093 Sum_probs=85.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CC--CCeEEEccccCCCCC---CCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IP--QLKYLQMDVRDMSFF---EDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~--~v~~~~~d~~~~~~~---~~~~~D~v~ 120 (252)
.++.+|||+|||+|.++..++..|. +|+++|+|+.+++.+++++.. .. +++++++|+.++... ..++||+|+
T Consensus 152 ~~~~~VLDlgcGtG~~sl~la~~ga-~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii 230 (332)
T 2igt_A 152 DRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL 230 (332)
T ss_dssp SSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred CCCCcEEEcccccCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence 3567999999999999999999877 999999999999999998753 22 489999999876311 146899999
Q ss_pred eccchhhhcCC---CCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 121 DKGTLDSLMCG---TNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 121 ~~~~l~~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++.+....... .....+...+++++.++|+|||.+++....
T Consensus 231 ~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~ 274 (332)
T 2igt_A 231 TDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 274 (332)
T ss_dssp ECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred ECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC
Confidence 97653221000 001256789999999999999997776543
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-13 Score=106.67 Aligned_cols=122 Identities=13% Similarity=0.089 Sum_probs=95.5
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCC
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~ 114 (252)
-.+.+...++++.+|+|+|||+|.++..++..+ ..+|+++|+++.+++.|+++.+..+ ++++.++|..+.. .+.+
T Consensus 5 RL~~l~~~v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~l-~~~~ 83 (225)
T 3kr9_A 5 RLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAF-EETD 83 (225)
T ss_dssp HHHHHHTTSCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC-CGGG
T ss_pred HHHHHHHhCCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhhc-ccCc
Confidence 355677778888999999999999999999986 5589999999999999999985432 6899999987542 1223
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
+||+|+..+.- ......++..+.+.|+++|++++........-..++
T Consensus 84 ~~D~IviaG~G---------g~~i~~Il~~~~~~L~~~~~lVlq~~~~~~~vr~~L 130 (225)
T 3kr9_A 84 QVSVITIAGMG---------GRLIARILEEGLGKLANVERLILQPNNREDDLRIWL 130 (225)
T ss_dssp CCCEEEEEEEC---------HHHHHHHHHHTGGGCTTCCEEEEEESSCHHHHHHHH
T ss_pred CCCEEEEcCCC---------hHHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHH
Confidence 69999875542 234688899999999999999998775544444444
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-13 Score=107.10 Aligned_cols=97 Identities=21% Similarity=0.262 Sum_probs=76.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.++.+|||+|||+|.++..++..+..+++++|+++.+++.++++.. +++++++|+.+++ ++||+|+++.++++
T Consensus 50 ~~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~d~~~~~----~~~D~v~~~~p~~~ 122 (200)
T 1ne2_A 50 IGGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG---GVNFMVADVSEIS----GKYDTWIMNPPFGS 122 (200)
T ss_dssp SBTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT---TSEEEECCGGGCC----CCEEEEEECCCC--
T ss_pred CCCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC---CCEEEECcHHHCC----CCeeEEEECCCchh
Confidence 3667999999999999999998876579999999999999999875 7899999998864 58999999999998
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
. .......+++++.+++ |+.+++.
T Consensus 123 ~-----~~~~~~~~l~~~~~~~--g~~~~~~ 146 (200)
T 1ne2_A 123 V-----VKHSDRAFIDKAFETS--MWIYSIG 146 (200)
T ss_dssp ----------CHHHHHHHHHHE--EEEEEEE
T ss_pred c-----cCchhHHHHHHHHHhc--CcEEEEE
Confidence 8 3333457889999988 4433333
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-13 Score=115.20 Aligned_cols=109 Identities=23% Similarity=0.299 Sum_probs=84.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc------CCCCCeEEEccccCCCCC-CCCCeeEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSFF-EDESFDAV 119 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~------~~~~v~~~~~d~~~~~~~-~~~~~D~v 119 (252)
+++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++. ..++++++++|+.+.... .+++||+|
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI 173 (304)
T 3bwc_A 94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence 566799999999999999999873 5699999999999999999872 235799999999876411 46789999
Q ss_pred EeccchhhhcCCCCChhhH--HHHHHHHHHcccCCcEEEEEEcC
Q 025475 120 IDKGTLDSLMCGTNAPISA--SQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+++.+.++. +.... ..++++++++|+|||.+++....
T Consensus 174 i~d~~~~~~-----~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~ 212 (304)
T 3bwc_A 174 IIDTTDPAG-----PASKLFGEAFYKDVLRILKPDGICCNQGES 212 (304)
T ss_dssp EEECC--------------CCHHHHHHHHHHEEEEEEEEEEECC
T ss_pred EECCCCccc-----cchhhhHHHHHHHHHHhcCCCcEEEEecCC
Confidence 997665443 11222 68899999999999999987643
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-13 Score=115.77 Aligned_cols=100 Identities=19% Similarity=0.162 Sum_probs=84.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~--~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+.++.+|||+|||+|.++..+++.+. .+|+++|+|+.+++.+++++.. .++++++++|+.+.. ...++||+|++.
T Consensus 73 ~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~-~~~~~fD~Iv~~ 151 (317)
T 1dl5_A 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV-PEFSPYDVIFVT 151 (317)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEEC
T ss_pred CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc-ccCCCeEEEEEc
Confidence 35777999999999999999998742 4599999999999999998753 346999999998865 345789999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+++|+ . +.+.++|+|||.+++...
T Consensus 152 ~~~~~~-------~------~~~~~~LkpgG~lvi~~~ 176 (317)
T 1dl5_A 152 VGVDEV-------P------ETWFTQLKEGGRVIVPIN 176 (317)
T ss_dssp SBBSCC-------C------HHHHHHEEEEEEEEEEBC
T ss_pred CCHHHH-------H------HHHHHhcCCCcEEEEEEC
Confidence 999998 2 567889999999998863
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.48 E-value=7.4e-14 Score=111.75 Aligned_cols=108 Identities=15% Similarity=0.170 Sum_probs=86.1
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHcCC------CcEEEEeCCHHHHHHHHHhhcC-------CCCCeEEEccccC
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDGY------EDIVNIDISSVAIDMMKMKYEE-------IPQLKYLQMDVRD 107 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~------~~v~~vD~s~~~i~~a~~~~~~-------~~~v~~~~~d~~~ 107 (252)
+.+...+.++.+|||+|||+|.++..+++... .+++++|+++.+++.+++++.. ..+++++++|+.+
T Consensus 72 ~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~ 151 (227)
T 2pbf_A 72 KRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNIYQ 151 (227)
T ss_dssp HHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCGGG
T ss_pred HHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECChHh
Confidence 33433456788999999999999999998742 4899999999999999998743 3478999999887
Q ss_pred CCC---CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 108 MSF---FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 108 ~~~---~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
... ...++||+|++..+++++ ++++.++|+|||.+++....
T Consensus 152 ~~~~~~~~~~~fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lv~~~~~ 195 (227)
T 2pbf_A 152 VNEEEKKELGLFDAIHVGASASEL-------------PEILVDLLAENGKLIIPIEE 195 (227)
T ss_dssp CCHHHHHHHCCEEEEEECSBBSSC-------------CHHHHHHEEEEEEEEEEEEE
T ss_pred cccccCccCCCcCEEEECCchHHH-------------HHHHHHhcCCCcEEEEEEcc
Confidence 420 134679999999888876 37788999999999987743
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-13 Score=122.35 Aligned_cols=102 Identities=20% Similarity=0.234 Sum_probs=86.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++.+..+|+++|+|+ +++.|++++... ++++++++|+.+.+ ++ ++||+|+++.+
T Consensus 157 ~~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~-~~-~~fD~Ivs~~~ 233 (480)
T 3b3j_A 157 FKDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS-LP-EQVDIIISEPM 233 (480)
T ss_dssp TTTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC-CS-SCEEEEECCCC
T ss_pred cCCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc-cC-CCeEEEEEeCc
Confidence 35679999999999999999998767999999998 999999887532 47999999999875 43 58999999988
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
++|+ ..+.....+.+++++|+|||.+++
T Consensus 234 ~~~~-----~~e~~~~~l~~~~~~LkpgG~li~ 261 (480)
T 3b3j_A 234 GYML-----FNERMLESYLHAKKYLKPSGNMFP 261 (480)
T ss_dssp HHHH-----TCHHHHHHHHHGGGGEEEEEEEES
T ss_pred hHhc-----CcHHHHHHHHHHHHhcCCCCEEEE
Confidence 8887 556667788899999999999885
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.2e-13 Score=118.25 Aligned_cols=101 Identities=20% Similarity=0.238 Sum_probs=82.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
++.+|||+|||+|.++..+++.|..+|++||.|+ +++.|++.++.+ .+|++++++++++. ++ +++|+|++...-
T Consensus 83 ~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~~-lp-e~~DvivsE~~~ 159 (376)
T 4hc4_A 83 RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETVE-LP-EQVDAIVSEWMG 159 (376)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTCC-CS-SCEEEEECCCCB
T ss_pred CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeeec-CC-ccccEEEeeccc
Confidence 5779999999999999999999988999999996 888888877532 36999999999986 44 689999985543
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
+.+ ........++....++|+|||.++
T Consensus 160 ~~l----~~e~~l~~~l~a~~r~Lkp~G~~i 186 (376)
T 4hc4_A 160 YGL----LHESMLSSVLHARTKWLKEGGLLL 186 (376)
T ss_dssp TTB----TTTCSHHHHHHHHHHHEEEEEEEE
T ss_pred ccc----cccchhhhHHHHHHhhCCCCceEC
Confidence 322 222578888998999999999865
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.6e-13 Score=113.08 Aligned_cols=107 Identities=14% Similarity=0.081 Sum_probs=88.4
Q ss_pred HHhhCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEE
Q 025475 43 VRKYIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 43 ~~~~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
+...+.++.+|||+|||+|.++..++..+ ..+|+++|+++.+++.++++++.. .++.++++|+.+.+ . .++||+|
T Consensus 113 ~~~~~~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~~-~-~~~~D~V 190 (272)
T 3a27_A 113 MAFISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDVE-L-KDVADRV 190 (272)
T ss_dssp HHTSCCTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGCC-C-TTCEEEE
T ss_pred HHHhcCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHcC-c-cCCceEE
Confidence 34446778899999999999999999983 559999999999999999988543 47889999998874 4 5689999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+++.+. ....++.++.+.|+|||.+++..+..
T Consensus 191 i~d~p~-----------~~~~~l~~~~~~LkpgG~l~~s~~~~ 222 (272)
T 3a27_A 191 IMGYVH-----------KTHKFLDKTFEFLKDRGVIHYHETVA 222 (272)
T ss_dssp EECCCS-----------SGGGGHHHHHHHEEEEEEEEEEEEEE
T ss_pred EECCcc-----------cHHHHHHHHHHHcCCCCEEEEEEcCc
Confidence 987543 34567888999999999999887643
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.3e-13 Score=112.37 Aligned_cols=103 Identities=14% Similarity=0.230 Sum_probs=87.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++.. .+++++.++|+.+.+ +++++||+|++
T Consensus 94 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~-~~~~~~D~v~~ 172 (258)
T 2pwy_A 94 LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAE-LEEAAYDGVAL 172 (258)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCC-CCTTCEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcC-CCCCCcCEEEE
Confidence 457779999999999999999987 4 46999999999999999998743 357999999998875 66778999997
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+ . .+...+++++.++|+|||.+++.....
T Consensus 173 ~-----~-------~~~~~~l~~~~~~L~~gG~l~~~~~~~ 201 (258)
T 2pwy_A 173 D-----L-------MEPWKVLEKAALALKPDRFLVAYLPNI 201 (258)
T ss_dssp E-----S-------SCGGGGHHHHHHHEEEEEEEEEEESCH
T ss_pred C-----C-------cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 3 3 445678999999999999999988654
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=7.1e-14 Score=120.22 Aligned_cols=100 Identities=18% Similarity=0.195 Sum_probs=84.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+++.+|||+|||+|.++..+++.+ ..+++++|+ +.+++.+++. ++++++++|+.+ + ++. ||+|++..++|
T Consensus 208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~-~~~--~D~v~~~~~lh 278 (372)
T 1fp1_D 208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPPL----SGIEHVGGDMFA-S-VPQ--GDAMILKAVCH 278 (372)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCC----TTEEEEECCTTT-C-CCC--EEEEEEESSGG
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhhc----CCCEEEeCCccc-C-CCC--CCEEEEecccc
Confidence 456799999999999999999885 458899999 9998877642 579999999987 4 453 99999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+ ++.....++++++++|+|||.+++.+..
T Consensus 279 ~~-----~d~~~~~~l~~~~~~L~pgG~l~i~e~~ 308 (372)
T 1fp1_D 279 NW-----SDEKCIEFLSNCHKALSPNGKVIIVEFI 308 (372)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cC-----CHHHHHHHHHHHHHhcCCCCEEEEEEec
Confidence 99 5555569999999999999999998754
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=119.30 Aligned_cols=130 Identities=18% Similarity=0.131 Sum_probs=96.3
Q ss_pred eccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCC
Q 025475 33 YQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMS 109 (252)
Q Consensus 33 ~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~ 109 (252)
+.........+.....++.+|||+|||+|.++..++..|..+|+++|+++.+++.+++++...+ +++++++|+.+..
T Consensus 201 f~~~~~~~~~~~~~~~~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~~~d~~~~~ 280 (396)
T 2as0_A 201 FLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEEM 280 (396)
T ss_dssp CSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHH
T ss_pred cCCHHHHHHHHHHHhhCCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEECCHHHHH
Confidence 3333334555655554778999999999999999999876699999999999999999985432 6899999998753
Q ss_pred C-C--CCCCeeEEEeccchhhhcCC--CCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 110 F-F--EDESFDAVIDKGTLDSLMCG--TNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 110 ~-~--~~~~~D~v~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
. . ...+||+|+++.+....... .........++.++.++|+|||.++++++..
T Consensus 281 ~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~ 338 (396)
T 2as0_A 281 EKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQ 338 (396)
T ss_dssp HHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCT
T ss_pred HHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 1 1 25689999997653221000 0001566788999999999999999888654
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.4e-14 Score=118.93 Aligned_cols=107 Identities=25% Similarity=0.325 Sum_probs=83.6
Q ss_pred hHHHHHhhCCCCCcEEEEccc------CcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC
Q 025475 39 LRPFVRKYIPTSSRVLMVGCG------NALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF 110 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G------~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~ 110 (252)
..+++.....++.+|||+||| +|..+..+++. ...+|+++|+|+.|. ...++++++++|+.+++
T Consensus 206 Ye~lL~~l~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~-------~~~~rI~fv~GDa~dlp- 277 (419)
T 3sso_A 206 YDRHFRDYRNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH-------VDELRIRTIQGDQNDAE- 277 (419)
T ss_dssp HHHHHGGGTTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG-------GCBTTEEEEECCTTCHH-
T ss_pred HHHHHHhhcCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh-------hcCCCcEEEEecccccc-
Confidence 444555555567799999999 66666666654 346999999999973 12358999999999876
Q ss_pred CC------CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 111 FE------DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 111 ~~------~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+. +++||+|+++.. |+. .+..+.+++++++|||||++++.+..
T Consensus 278 f~~~l~~~d~sFDlVisdgs-H~~-------~d~~~aL~el~rvLKPGGvlVi~Dl~ 326 (419)
T 3sso_A 278 FLDRIARRYGPFDIVIDDGS-HIN-------AHVRTSFAALFPHVRPGGLYVIEDMW 326 (419)
T ss_dssp HHHHHHHHHCCEEEEEECSC-CCH-------HHHHHHHHHHGGGEEEEEEEEEECGG
T ss_pred hhhhhhcccCCccEEEECCc-ccc-------hhHHHHHHHHHHhcCCCeEEEEEecc
Confidence 54 578999999754 666 78899999999999999999998753
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.47 E-value=4.1e-13 Score=103.30 Aligned_cols=101 Identities=17% Similarity=0.217 Sum_probs=83.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
..++.+|||+|||+|.++..+++ ...+++++|+++.+++.+++++... ++++++++|+.+ + +++++||+|+++.+
T Consensus 33 ~~~~~~vLdiG~G~G~~~~~l~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~-~-~~~~~~D~i~~~~~ 109 (183)
T 2yxd_A 33 LNKDDVVVDVGCGSGGMTVEIAK-RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAED-V-LDKLEFNKAFIGGT 109 (183)
T ss_dssp CCTTCEEEEESCCCSHHHHHHHT-TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHH-H-GGGCCCSEEEECSC
T ss_pred CCCCCEEEEeCCCCCHHHHHHHh-cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccc-c-ccCCCCcEEEECCc
Confidence 34667999999999999999998 4559999999999999999988543 478999999987 3 55678999999876
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.+...+++++.++ |||.+++......
T Consensus 110 -----------~~~~~~l~~~~~~--~gG~l~~~~~~~~ 135 (183)
T 2yxd_A 110 -----------KNIEKIIEILDKK--KINHIVANTIVLE 135 (183)
T ss_dssp -----------SCHHHHHHHHHHT--TCCEEEEEESCHH
T ss_pred -----------ccHHHHHHHHhhC--CCCEEEEEecccc
Confidence 3446788888888 9999999886543
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=116.69 Aligned_cols=105 Identities=16% Similarity=0.189 Sum_probs=83.9
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
++++.+|||+|||+|..+..+++.. ..+++++|+ +.++. +++.+. .++++++.+|+.+. .+ +||+|++.
T Consensus 182 ~~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~~~~~~~v~~~~~d~~~~--~p--~~D~v~~~ 254 (348)
T 3lst_A 182 FPATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDAPDVAGRWKVVEGDFLRE--VP--HADVHVLK 254 (348)
T ss_dssp CCSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCCGGGTTSEEEEECCTTTC--CC--CCSEEEEE
T ss_pred ccCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccccCCCCCeEEEecCCCCC--CC--CCcEEEEe
Confidence 3466799999999999999999874 458999999 45554 333221 24699999999733 34 89999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.++||+ ++++..+++++++++|+|||++++.+...+
T Consensus 255 ~vlh~~-----~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~ 290 (348)
T 3lst_A 255 RILHNW-----GDEDSVRILTNCRRVMPAHGRVLVIDAVVP 290 (348)
T ss_dssp SCGGGS-----CHHHHHHHHHHHHHTCCTTCEEEEEECCBC
T ss_pred hhccCC-----CHHHHHHHHHHHHHhcCCCCEEEEEEeccC
Confidence 999999 666668999999999999999999886543
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-13 Score=112.98 Aligned_cols=111 Identities=14% Similarity=0.140 Sum_probs=90.3
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCC
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFED 113 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~ 113 (252)
..-...+...+.++.+|||+|||+|.++..++..|..+|+++|+++.+++.++++++.+ ++++++++|..++. ..
T Consensus 113 ~~er~ri~~~~~~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~--~~ 190 (278)
T 3k6r_A 113 VKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--GE 190 (278)
T ss_dssp HHHHHHHHHHCCTTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--CC
T ss_pred HHHHHHHHHhcCCCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhc--cc
Confidence 33455677778899999999999999999999998779999999999999999998542 36899999999885 56
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+.||.|+++.+.. ...++..+.++|++||.+.+.++
T Consensus 191 ~~~D~Vi~~~p~~-----------~~~~l~~a~~~lk~gG~ih~~~~ 226 (278)
T 3k6r_A 191 NIADRILMGYVVR-----------THEFIPKALSIAKDGAIIHYHNT 226 (278)
T ss_dssp SCEEEEEECCCSS-----------GGGGHHHHHHHEEEEEEEEEEEE
T ss_pred cCCCEEEECCCCc-----------HHHHHHHHHHHcCCCCEEEEEee
Confidence 7899999875422 23466777889999999876554
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-13 Score=118.69 Aligned_cols=108 Identities=10% Similarity=0.042 Sum_probs=83.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHH-------HHhhcC----CCCCeEEEccccCCC-CC--
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMM-------KMKYEE----IPQLKYLQMDVRDMS-FF-- 111 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a-------~~~~~~----~~~v~~~~~d~~~~~-~~-- 111 (252)
+.++.+|||+|||+|.++..++.. +..+|+|+|+++.+++.| ++++.. ..+++++++|....+ .+
T Consensus 240 l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~~~~~~~~~ 319 (433)
T 1u2z_A 240 LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSFVDNNRVAE 319 (433)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCSTTCHHHHH
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcccccccccc
Confidence 456779999999999999999986 555899999999999888 776642 247888887644211 01
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
..++||+|+++.++ +. ++....++++.++|+|||.+++.+...
T Consensus 320 ~~~~FDvIvvn~~l-~~-------~d~~~~L~el~r~LKpGG~lVi~d~f~ 362 (433)
T 1u2z_A 320 LIPQCDVILVNNFL-FD-------EDLNKKVEKILQTAKVGCKIISLKSLR 362 (433)
T ss_dssp HGGGCSEEEECCTT-CC-------HHHHHHHHHHHTTCCTTCEEEESSCSS
T ss_pred ccCCCCEEEEeCcc-cc-------ccHHHHHHHHHHhCCCCeEEEEeeccC
Confidence 23689999987665 33 677788999999999999999875433
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.46 E-value=9.6e-14 Score=111.22 Aligned_cols=101 Identities=18% Similarity=0.190 Sum_probs=83.3
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHc-CC------CcEEEEeCCHHHHHHHHHhhcC-------CCCCeEEEccccCCCCC
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKD-GY------EDIVNIDISSVAIDMMKMKYEE-------IPQLKYLQMDVRDMSFF 111 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~-~~------~~v~~vD~s~~~i~~a~~~~~~-------~~~v~~~~~d~~~~~~~ 111 (252)
.+.++.+|||+|||+|.++..+++. +. .+++++|+++.+++.+++++.. ..+++++++|+.+.. .
T Consensus 81 ~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~-~ 159 (227)
T 1r18_A 81 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY-P 159 (227)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC-G
T ss_pred hCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEEEECCcccCC-C
Confidence 3567789999999999999999885 32 4899999999999999988743 347899999998732 2
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..++||+|++..+++++ .+++.++|+|||.+++...
T Consensus 160 ~~~~fD~I~~~~~~~~~-------------~~~~~~~LkpgG~lvi~~~ 195 (227)
T 1r18_A 160 PNAPYNAIHVGAAAPDT-------------PTELINQLASGGRLIVPVG 195 (227)
T ss_dssp GGCSEEEEEECSCBSSC-------------CHHHHHTEEEEEEEEEEES
T ss_pred cCCCccEEEECCchHHH-------------HHHHHHHhcCCCEEEEEEe
Confidence 23689999999998887 2678999999999998774
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=110.62 Aligned_cols=104 Identities=11% Similarity=0.120 Sum_probs=83.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCC-CCC-CCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFF-EDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~-~~~-~~~~~D~v~ 120 (252)
.++.+|||+|||+|..+..+++. + ..+++++|+++.+++.|++++... ++++++++|+.+. +.. ..++||+|+
T Consensus 62 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~ 141 (248)
T 3tfw_A 62 TQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLGECPAFDLIF 141 (248)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCCSCCCCSEEE
T ss_pred cCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcCCCCCeEEEE
Confidence 35679999999999999999987 2 459999999999999999998532 3799999998763 312 234899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+... . .....+++++.++|+|||++++.+..
T Consensus 142 ~d~~---~-------~~~~~~l~~~~~~LkpGG~lv~~~~~ 172 (248)
T 3tfw_A 142 IDAD---K-------PNNPHYLRWALRYSRPGTLIIGDNVV 172 (248)
T ss_dssp ECSC---G-------GGHHHHHHHHHHTCCTTCEEEEECCS
T ss_pred ECCc---h-------HHHHHHHHHHHHhcCCCeEEEEeCCC
Confidence 8653 2 55677999999999999999886643
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-13 Score=114.40 Aligned_cols=115 Identities=15% Similarity=0.112 Sum_probs=90.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||+|.++..++..+ ..+++|+|+++.+++.|+++++..+ +++++++|+.+++ .+...||+|+++
T Consensus 201 ~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~-~~~~~~D~Ii~n 279 (354)
T 3tma_A 201 ARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLP-RFFPEVDRILAN 279 (354)
T ss_dssp CCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGG-GTCCCCSEEEEC
T ss_pred CCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCc-cccCCCCEEEEC
Confidence 3567799999999999999999863 3589999999999999999986433 7999999999987 556679999998
Q ss_pred cchhhhcCCC-CChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 123 GTLDSLMCGT-NAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 123 ~~l~~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.++....... ........+++++.++|+|||.+++.+...
T Consensus 280 pPyg~r~~~~~~~~~~~~~~~~~~~~~LkpgG~l~i~t~~~ 320 (354)
T 3tma_A 280 PPHGLRLGRKEGLFHLYWDFLRGALALLPPGGRVALLTLRP 320 (354)
T ss_dssp CCSCC----CHHHHHHHHHHHHHHHHTSCTTCEEEEEESCH
T ss_pred CCCcCccCCcccHHHHHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 8765320000 001234788999999999999999988643
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=112.09 Aligned_cols=108 Identities=13% Similarity=0.184 Sum_probs=83.0
Q ss_pred CcEEEEcccC--cHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCC---CC--CCCee--
Q 025475 51 SRVLMVGCGN--ALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSF---FE--DESFD-- 117 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~---~~--~~~~D-- 117 (252)
.+|||+|||+ +.++..++.. ...+|+++|.|+.|+..++.++...+ +++++++|+.+... .+ .+.||
T Consensus 80 ~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~~~l~~~~~~~~~D~~ 159 (277)
T 3giw_A 80 RQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPASILDAPELRDTLDLT 159 (277)
T ss_dssp CEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHHHHHTCHHHHTTCCTT
T ss_pred CEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChhhhhcccccccccCcC
Confidence 5899999997 3344444432 34599999999999999999986533 68999999988520 01 23344
Q ss_pred ---EEEeccchhhhcCCCCChhh-HHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 118 ---AVIDKGTLDSLMCGTNAPIS-ASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 118 ---~v~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.|+++.+|||+ ++.+ +..+++++++.|+|||+|++++...+
T Consensus 160 ~p~av~~~avLH~l-----~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d 204 (277)
T 3giw_A 160 RPVALTVIAIVHFV-----LDEDDAVGIVRRLLEPLPSGSYLAMSIGTAE 204 (277)
T ss_dssp SCCEEEEESCGGGS-----CGGGCHHHHHHHHHTTSCTTCEEEEEEECCT
T ss_pred CcchHHhhhhHhcC-----CchhhHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence 68899999999 4443 78999999999999999999987654
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-13 Score=116.99 Aligned_cols=102 Identities=16% Similarity=0.142 Sum_probs=85.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
+++..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++. ++++++.+|+.+ + ++ .||+|++..++
T Consensus 186 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~----~~v~~~~~d~~~-~-~p--~~D~v~~~~~l 256 (352)
T 1fp2_A 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSGS----NNLTYVGGDMFT-S-IP--NADAVLLKYIL 256 (352)
T ss_dssp HTTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCCB----TTEEEEECCTTT-C-CC--CCSEEEEESCG
T ss_pred cccCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcccC----CCcEEEeccccC-C-CC--CccEEEeehhh
Confidence 3456799999999999999999873 458999999 9998877652 469999999977 4 44 39999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccC---CcEEEEEEcCC
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKP---GGIYMLITYGD 162 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~i~~~~~ 162 (252)
||+ ++....+++++++++|+| ||++++.+...
T Consensus 257 h~~-----~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 291 (352)
T 1fp2_A 257 HNW-----TDKDCLRILKKCKEAVTNDGKRGKVTIIDMVI 291 (352)
T ss_dssp GGS-----CHHHHHHHHHHHHHHHSGGGCCCEEEEEECEE
T ss_pred ccC-----CHHHHHHHHHHHHHhCCCCCCCcEEEEEEeec
Confidence 999 555566999999999999 99999988653
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=110.62 Aligned_cols=99 Identities=15% Similarity=0.250 Sum_probs=81.2
Q ss_pred CcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--C--CCCeEEEccccCCC-CCCCCCeeEEEecc
Q 025475 51 SRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--I--PQLKYLQMDVRDMS-FFEDESFDAVIDKG 123 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~--~~v~~~~~d~~~~~-~~~~~~~D~v~~~~ 123 (252)
.+|||+|||+|..+..+++. + ..+++++|+++.+++.|+++++. . ++++++++|+.+.. .+.+++||+|++..
T Consensus 58 ~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V~~d~ 137 (221)
T 3dr5_A 58 TGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRLANDSYQLVFGQV 137 (221)
T ss_dssp CEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGSCTTCEEEEEECC
T ss_pred CCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHhcCCCcCeEEEcC
Confidence 49999999999999999985 2 46999999999999999999854 2 36999999987753 13367899999865
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.. .+...+++++.++|+|||.+++-+
T Consensus 138 ~~----------~~~~~~l~~~~~~LkpGG~lv~dn 163 (221)
T 3dr5_A 138 SP----------MDLKALVDAAWPLLRRGGALVLAD 163 (221)
T ss_dssp CT----------TTHHHHHHHHHHHEEEEEEEEETT
T ss_pred cH----------HHHHHHHHHHHHHcCCCcEEEEeC
Confidence 32 445678999999999999998844
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.5e-13 Score=112.54 Aligned_cols=109 Identities=17% Similarity=0.219 Sum_probs=86.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.+++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++.. .++++++++|+.+......++||+|
T Consensus 76 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I 155 (283)
T 2i7c_A 76 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 155 (283)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEE
Confidence 3566799999999999999999874 56999999999999999998853 3589999999977531235789999
Q ss_pred EeccchhhhcCCCCChhhH--HHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISA--SQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++.+.+.. +.... ..+++.++++|+|||.+++...
T Consensus 156 i~d~~~~~~-----~~~~l~~~~~l~~~~~~L~pgG~lv~~~~ 193 (283)
T 2i7c_A 156 IVDSSDPIG-----PAETLFNQNFYEKIYNALKPNGYCVAQCE 193 (283)
T ss_dssp EEECCCTTT-----GGGGGSSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCCCCC-----cchhhhHHHHHHHHHHhcCCCcEEEEECC
Confidence 996543322 22233 7899999999999999998753
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.1e-13 Score=114.56 Aligned_cols=111 Identities=25% Similarity=0.281 Sum_probs=86.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC-------CCCCeEEEccccCCCCCCCCCeeE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE-------IPQLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~-------~~~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
.+.+.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++.. .++++++++|+.+......++||+
T Consensus 75 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~ 154 (314)
T 1uir_A 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (314)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccE
Confidence 355679999999999999999987 356899999999999999998742 358999999998742134678999
Q ss_pred EEeccchhhhcCCCCChhh--HHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPIS--ASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+++...+....+ +... ...++++++++|+|||.+++..
T Consensus 155 Ii~d~~~~~~~~~--~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 195 (314)
T 1uir_A 155 VIIDLTDPVGEDN--PARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (314)
T ss_dssp EEEECCCCBSTTC--GGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEECCCCcccccC--cchhccHHHHHHHHHHhcCCCcEEEEEc
Confidence 9998655430000 1122 4789999999999999999864
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=2.2e-13 Score=117.61 Aligned_cols=126 Identities=13% Similarity=0.071 Sum_probs=93.6
Q ss_pred hhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--C--CCeEEEccccCCCC-C-
Q 025475 38 ALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--P--QLKYLQMDVRDMSF-F- 111 (252)
Q Consensus 38 ~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~--~v~~~~~d~~~~~~-~- 111 (252)
....++...+.++.+|||+|||+|.++..++..+..+|+++|+|+.+++.|+++++.. . +++++++|+.+... .
T Consensus 201 ~~~~~~~~~~~~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~~~~D~~~~l~~~~ 280 (385)
T 2b78_A 201 QVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYAR 280 (385)
T ss_dssp HHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHHHHHHHH
Confidence 3345555544667899999999999999999987668999999999999999988532 2 78999999977421 1
Q ss_pred -CCCCeeEEEeccchhhh--cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 112 -EDESFDAVIDKGTLDSL--MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 112 -~~~~~D~v~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
...+||+|+++.+.... ............++..+.++|+|||.+++......
T Consensus 281 ~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~~~~ 335 (385)
T 2b78_A 281 RHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAAN 335 (385)
T ss_dssp HTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred HhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCc
Confidence 24589999998764210 00111224567788999999999999998886543
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=3e-13 Score=113.95 Aligned_cols=109 Identities=17% Similarity=0.255 Sum_probs=85.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.+.+.+|||+|||+|..+..+++. +..+++++|+++.+++.|++++.. .++++++++|+.+.....+++||+|
T Consensus 114 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvI 193 (321)
T 2pt6_A 114 SKEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVI 193 (321)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEE
T ss_pred CCCCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEE
Confidence 345679999999999999999987 356999999999999999998754 3579999999877421235689999
Q ss_pred EeccchhhhcCCCCChhhH--HHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISA--SQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++..- ++ .+.... ..+++++.++|+|||.+++...
T Consensus 194 i~d~~~-p~----~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 231 (321)
T 2pt6_A 194 IVDSSD-PI----GPAETLFNQNFYEKIYNALKPNGYCVAQCE 231 (321)
T ss_dssp EEECCC-SS----SGGGGGSSHHHHHHHHHHEEEEEEEEEEEC
T ss_pred EECCcC-CC----CcchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 987531 11 011222 7899999999999999998653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-13 Score=113.89 Aligned_cols=107 Identities=13% Similarity=0.188 Sum_probs=78.8
Q ss_pred hHHHHHhh-C-CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCe-EEEccccCCC--CCCC
Q 025475 39 LRPFVRKY-I-PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLK-YLQMDVRDMS--FFED 113 (252)
Q Consensus 39 l~~~~~~~-~-~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~-~~~~d~~~~~--~~~~ 113 (252)
+...+... + .++.+|||+|||||.++..+++.|..+|+|+|+|+.|++.+.++. +++. +...|+..+. .++.
T Consensus 73 l~~~l~~~~~~~~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~r~~---~rv~~~~~~ni~~l~~~~l~~ 149 (291)
T 3hp7_A 73 LEKALAVFNLSVEDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKLRQD---DRVRSMEQYNFRYAEPVDFTE 149 (291)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHHHTC---TTEEEECSCCGGGCCGGGCTT
T ss_pred HHHHHHhcCCCccccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC---cccceecccCceecchhhCCC
Confidence 44555544 2 256699999999999999999998779999999999998855432 2222 2233444432 1334
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
.+||+|++..+++++ ..++.+++++|+|||.+++.
T Consensus 150 ~~fD~v~~d~sf~sl----------~~vL~e~~rvLkpGG~lv~l 184 (291)
T 3hp7_A 150 GLPSFASIDVSFISL----------NLILPALAKILVDGGQVVAL 184 (291)
T ss_dssp CCCSEEEECCSSSCG----------GGTHHHHHHHSCTTCEEEEE
T ss_pred CCCCEEEEEeeHhhH----------HHHHHHHHHHcCcCCEEEEE
Confidence 469999998776655 67899999999999999886
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.44 E-value=5.8e-13 Score=111.97 Aligned_cols=114 Identities=11% Similarity=0.081 Sum_probs=87.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++.. ..+++++++|+.+++ ...++||+|+++
T Consensus 116 ~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~g~~~v~~~~~D~~~~~-~~~~~fD~Il~d 194 (315)
T 1ixk_A 116 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG-ELNVEFDKILLD 194 (315)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG-GGCCCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHhCCCeEEEEECChhhcc-cccccCCEEEEe
Confidence 4567799999999999999999862 46899999999999999998853 347899999998876 345689999986
Q ss_pred cchhhhcCCCC--------Ch-------hhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 123 GTLDSLMCGTN--------AP-------ISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 123 ~~l~~~~~~~~--------~~-------~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..+.....-.. .. .....+++++.++|||||.++++++.
T Consensus 195 ~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~LkpGG~lv~stcs 248 (315)
T 1ixk_A 195 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 248 (315)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred CCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCC
Confidence 54321100000 01 12368899999999999999998875
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=2.3e-13 Score=113.76 Aligned_cols=109 Identities=18% Similarity=0.233 Sum_probs=82.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
+.+.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++.. .++++++++|+.+......++||+|+
T Consensus 94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii 173 (304)
T 2o07_A 94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII 173 (304)
T ss_dssp SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence 456799999999999999999874 56999999999999999998742 46899999998774213457899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++...+.. .........++++++++|+|||.+++..
T Consensus 174 ~d~~~~~~---~~~~l~~~~~l~~~~~~LkpgG~lv~~~ 209 (304)
T 2o07_A 174 TDSSDPMG---PAESLFKESYYQLMKTALKEDGVLCCQG 209 (304)
T ss_dssp EECC--------------CHHHHHHHHHEEEEEEEEEEE
T ss_pred ECCCCCCC---cchhhhHHHHHHHHHhccCCCeEEEEec
Confidence 96543221 0001124678999999999999999876
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=112.00 Aligned_cols=107 Identities=18% Similarity=0.131 Sum_probs=91.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
++..+|+|+|||+|.++..+++.. ..+++..|. |.+++.++++.+. .++++++.+|+++.+ .+ .+|+|++..+
T Consensus 178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~-~~--~~D~~~~~~v 253 (353)
T 4a6d_A 178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP-LP--EADLYILARV 253 (353)
T ss_dssp GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC-CC--CCSEEEEESS
T ss_pred ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC-CC--CceEEEeeee
Confidence 355699999999999999999884 557888997 8899999988753 348999999998754 33 4799999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+|++ ++++..++|+++++.|+|||.++|.+...+
T Consensus 254 lh~~-----~d~~~~~iL~~~~~al~pgg~lli~e~~~~ 287 (353)
T 4a6d_A 254 LHDW-----ADGKCSHLLERIYHTCKPGGGILVIESLLD 287 (353)
T ss_dssp GGGS-----CHHHHHHHHHHHHHHCCTTCEEEEEECCCC
T ss_pred cccC-----CHHHHHHHHHHHHhhCCCCCEEEEEEeeeC
Confidence 9999 778889999999999999999999997544
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.2e-12 Score=103.21 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=81.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+++.+..+++++|+++.+++.++++....+ +++++++|+.+++ ++||+|+++.+++
T Consensus 48 ~~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~----~~~D~v~~~~p~~ 123 (207)
T 1wy7_A 48 IEGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN----SRVDIVIMNPPFG 123 (207)
T ss_dssp STTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC----CCCSEEEECCCCS
T ss_pred CCcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHcCCCEEEEECchHHcC----CCCCEEEEcCCCc
Confidence 3567999999999999999999876689999999999999999986544 7899999998864 3799999999887
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+. .......+++++.+++ || +++..
T Consensus 124 ~~-----~~~~~~~~l~~~~~~l--~~-~~~~~ 148 (207)
T 1wy7_A 124 SQ-----RKHADRPFLLKAFEIS--DV-VYSIH 148 (207)
T ss_dssp SS-----STTTTHHHHHHHHHHC--SE-EEEEE
T ss_pred cc-----cCCchHHHHHHHHHhc--Cc-EEEEE
Confidence 76 3344467888898888 55 44444
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.3e-13 Score=113.40 Aligned_cols=109 Identities=22% Similarity=0.358 Sum_probs=84.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCC-CCCCCCCeeE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDM-SFFEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~-~~~~~~~~D~ 118 (252)
.+.+.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++.. .++++++++|+.+. +...+++||+
T Consensus 118 ~~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDl 197 (334)
T 1xj5_A 118 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 197 (334)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccE
Confidence 3566799999999999999999873 56999999999999999998742 35899999998765 2134578999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
|+++...... .........+++++.++|+|||.+++.
T Consensus 198 Ii~d~~~p~~---~~~~l~~~~~l~~~~~~LkpgG~lv~~ 234 (334)
T 1xj5_A 198 VIVDSSDPIG---PAKELFEKPFFQSVARALRPGGVVCTQ 234 (334)
T ss_dssp EEECCCCTTS---GGGGGGSHHHHHHHHHHEEEEEEEEEE
T ss_pred EEECCCCccC---cchhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9996542111 001112478999999999999999986
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.9e-13 Score=111.98 Aligned_cols=107 Identities=19% Similarity=0.244 Sum_probs=83.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc------------CCCCCeEEEccccCCCCCCCC
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE------------EIPQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~------------~~~~v~~~~~d~~~~~~~~~~ 114 (252)
.+.+.+|||+|||+|.++..+++.+..+++++|+++.+++.|++++. ..++++++++|+.+.... ++
T Consensus 73 ~~~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~ 151 (281)
T 1mjf_A 73 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR 151 (281)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred CCCCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHhhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence 35567999999999999999998865699999999999999999871 135789999998764212 56
Q ss_pred CeeEEEeccchhhhcCCCCChhh--HHHHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPIS--ASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~--~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+||+|+++...+.- +... ...++++++++|+|||.+++..
T Consensus 152 ~fD~Ii~d~~~~~~-----~~~~l~~~~~l~~~~~~L~pgG~lv~~~ 193 (281)
T 1mjf_A 152 GFDVIIADSTDPVG-----PAKVLFSEEFYRYVYDALNNPGIYVTQA 193 (281)
T ss_dssp CEEEEEEECCCCC----------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeeEEEECCCCCCC-----cchhhhHHHHHHHHHHhcCCCcEEEEEc
Confidence 89999987653211 1122 3788999999999999998864
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.5e-13 Score=112.09 Aligned_cols=103 Identities=20% Similarity=0.346 Sum_probs=86.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC-----CCCCeEEEccccCCCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
+.++.+|||+|||+|.++..++.. + ..+++++|+++.+++.+++++.. ..+++++++|+.+.+ +++++||+|
T Consensus 97 ~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~-~~~~~~D~v 175 (280)
T 1i9g_A 97 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE-LPDGSVDRA 175 (280)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC-CCTTCEEEE
T ss_pred CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC-CCCCceeEE
Confidence 457779999999999999999985 3 46999999999999999998743 247999999998876 667789999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+++ . .++..+++++.++|+|||.+++.....
T Consensus 176 ~~~-----~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~ 206 (280)
T 1i9g_A 176 VLD-----M-------LAPWEVLDAVSRLLVAGGVLMVYVATV 206 (280)
T ss_dssp EEE-----S-------SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred EEC-----C-------cCHHHHHHHHHHhCCCCCEEEEEeCCH
Confidence 983 2 345578999999999999999988653
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-13 Score=110.40 Aligned_cols=101 Identities=19% Similarity=0.276 Sum_probs=85.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CC-CCeEEEccccCCCCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IP-QLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~~-~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.|+++++. .+ +++++++|+.+. +++++||+|++
T Consensus 91 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~v~~ 168 (255)
T 3mb5_A 91 ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEG--IEEENVDHVIL 168 (255)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGC--CCCCSEEEEEE
T ss_pred CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhc--cCCCCcCEEEE
Confidence 457779999999999999999988 4 56999999999999999998753 23 499999999865 46678999997
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+ . .+...+++++.++|+|||.+++....
T Consensus 169 ~-----~-------~~~~~~l~~~~~~L~~gG~l~~~~~~ 196 (255)
T 3mb5_A 169 D-----L-------PQPERVVEHAAKALKPGGFFVAYTPC 196 (255)
T ss_dssp C-----S-------SCGGGGHHHHHHHEEEEEEEEEEESS
T ss_pred C-----C-------CCHHHHHHHHHHHcCCCCEEEEEECC
Confidence 3 2 45567899999999999999988754
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.1e-13 Score=112.44 Aligned_cols=110 Identities=18% Similarity=0.246 Sum_probs=85.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc------CCCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~------~~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
+.+.+|||+|||+|..+..+++. +..++++||+++.+++.|++++. ..++++++.+|+.+......++||+|+
T Consensus 74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii 153 (275)
T 1iy9_A 74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM 153 (275)
T ss_dssp SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence 45679999999999999999988 56699999999999999999873 135899999998774213457899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
++...+.. .+..-....+++.+.++|+|||.+++...
T Consensus 154 ~d~~~~~~---~~~~l~~~~~~~~~~~~L~pgG~lv~~~~ 190 (275)
T 1iy9_A 154 VDSTEPVG---PAVNLFTKGFYAGIAKALKEDGIFVAQTD 190 (275)
T ss_dssp ESCSSCCS---CCCCCSTTHHHHHHHHHEEEEEEEEEECC
T ss_pred ECCCCCCC---cchhhhHHHHHHHHHHhcCCCcEEEEEcC
Confidence 97653221 11111236789999999999999988753
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-13 Score=112.51 Aligned_cols=111 Identities=16% Similarity=0.272 Sum_probs=83.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
+.+.+|||+|||+|..+..+++. +..+++++|+++.+++.+++++.. .++++++++|+.+......++||+|+
T Consensus 89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii 168 (296)
T 1inl_A 89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII 168 (296)
T ss_dssp SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence 45679999999999999999988 456999999999999999998732 35899999998774213456899999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
++....+. +.........+++++.++|+|||.+++...
T Consensus 169 ~d~~~~~~--~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~ 206 (296)
T 1inl_A 169 IDSTDPTA--GQGGHLFTEEFYQACYDALKEDGVFSAETE 206 (296)
T ss_dssp EEC------------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EcCCCccc--CchhhhhHHHHHHHHHHhcCCCcEEEEEcc
Confidence 86442212 000001237889999999999999998753
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.43 E-value=5.7e-13 Score=111.23 Aligned_cols=108 Identities=18% Similarity=0.253 Sum_probs=84.5
Q ss_pred CcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCC-CCCCCCeeEEEeccchh
Q 025475 51 SRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMS-FFEDESFDAVIDKGTLD 126 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~-~~~~~~~D~v~~~~~l~ 126 (252)
.+|||+|||+|.++..+++. ...++++||+++.+++.|++++.. .++++++++|..++. ...+++||+|++....+
T Consensus 91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~~~~ 170 (317)
T 3gjy_A 91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESFTPASRDVIIRDVFAG 170 (317)
T ss_dssp CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTCCTTCEEEEEECCSTT
T ss_pred CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhccCCCCCEEEECCCCc
Confidence 49999999999999999984 344899999999999999999853 358999999998753 13467899999975433
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.. .+..-....+++.++++|+|||++++....
T Consensus 171 ~~---~~~~L~t~efl~~~~r~LkpgGvlv~~~~~ 202 (317)
T 3gjy_A 171 AI---TPQNFTTVEFFEHCHRGLAPGGLYVANCGD 202 (317)
T ss_dssp SC---CCGGGSBHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred cc---cchhhhHHHHHHHHHHhcCCCcEEEEEecC
Confidence 21 111112378999999999999999887754
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=1.2e-13 Score=105.54 Aligned_cols=107 Identities=21% Similarity=0.262 Sum_probs=82.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-------CCCCCee
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-------FEDESFD 117 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-------~~~~~~D 117 (252)
..++.+|||+|||+|.++..+++. + ..+++++|+++ +++. ++++++++|+.+.+. +++++||
T Consensus 20 ~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T 1ej0_A 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------VGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC--------TTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc--------CcEEEEEcccccchhhhhhhccCCCCcee
Confidence 456779999999999999999987 4 36999999999 6532 468899999987530 3457899
Q ss_pred EEEeccchhhhcCCCCChhhH------HHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 118 AVIDKGTLDSLMCGTNAPISA------SQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~------~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+|+++.++++. +....+.. ..+++++.++|+|||.+++..+..+.
T Consensus 91 ~i~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~ 141 (180)
T 1ej0_A 91 VVMSDMAPNMS--GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp EEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred EEEECCCcccc--CCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEecCCc
Confidence 99999887765 00001111 68899999999999999998876543
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=5.2e-13 Score=123.27 Aligned_cols=124 Identities=14% Similarity=0.118 Sum_probs=93.9
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEccccCCCCCC
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDMSFFE 112 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d~~~~~~~~ 112 (252)
......+... .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.++++++.. .+++++++|+.+.....
T Consensus 528 r~~r~~l~~~-~~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~i~~D~~~~l~~~ 606 (703)
T 3v97_A 528 RIARRMLGQM-SKGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRLIQADCLAWLREA 606 (703)
T ss_dssp HHHHHHHHHH-CTTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEEEESCHHHHHHHC
T ss_pred HHHHHHHHHh-cCCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHhc
Confidence 3445555554 467899999999999999999988768999999999999999998532 26899999998853234
Q ss_pred CCCeeEEEeccchhhhcC----CCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 113 DESFDAVIDKGTLDSLMC----GTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.++||+|+++.+...-.. ......+...++..+.++|+|||.+++....
T Consensus 607 ~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~s~~~ 659 (703)
T 3v97_A 607 NEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMFSNNK 659 (703)
T ss_dssp CCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEEEECC
Confidence 578999999875311000 0011267788999999999999999987754
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3e-13 Score=112.11 Aligned_cols=108 Identities=14% Similarity=0.138 Sum_probs=81.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCe---eEEEec
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESF---DAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~---D~v~~~ 122 (252)
++.+|||+|||+|.++..++..+..+++++|+|+.+++.|+++....+ +++++++|+.+.. . ++| |+|+++
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~~~~D~~~~~--~-~~f~~~D~Ivsn 199 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPF--K-EKFASIEMILSN 199 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGG--G-GGTTTCCEEEEC
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcchhhc--c-cccCCCCEEEEc
Confidence 556999999999999999988743589999999999999999985432 4999999998743 2 478 999998
Q ss_pred cchhhhcC----CCC--C------hhhHHHHHHHHH-HcccCCcEEEEEE
Q 025475 123 GTLDSLMC----GTN--A------PISASQMLGEVS-RLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~----~~~--~------~~~~~~~l~~~~-~~L~~gG~l~i~~ 159 (252)
.++..... ... + ..+...+++++. +.|+|||.+++..
T Consensus 200 PPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l~pgG~l~~e~ 249 (284)
T 1nv8_A 200 PPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSGKIVLMEI 249 (284)
T ss_dssp CCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTTCEEEEEC
T ss_pred CCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcCCCCCEEEEEE
Confidence 66542200 000 0 011237899999 9999999998744
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=4e-13 Score=107.16 Aligned_cols=104 Identities=13% Similarity=0.104 Sum_probs=82.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-CCC---CCCeeE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FFE---DESFDA 118 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-~~~---~~~~D~ 118 (252)
.++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++... ++++++++|+.+.. .+. .++||+
T Consensus 57 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~ 136 (223)
T 3duw_A 57 QGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALDSLQQIENEKYEPFDF 136 (223)
T ss_dssp HTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCCCCSE
T ss_pred hCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCcCE
Confidence 356799999999999999999872 359999999999999999988532 25999999987642 111 257999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|++.... .....+++++.++|+|||.+++.+..
T Consensus 137 v~~d~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 137 IFIDADK----------QNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp EEECSCG----------GGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred EEEcCCc----------HHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 9987542 45578999999999999988876543
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-13 Score=113.32 Aligned_cols=108 Identities=21% Similarity=0.284 Sum_probs=81.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.+.+.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++.. .++++++.+|+.+......++||+|
T Consensus 106 ~~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~I 185 (314)
T 2b2c_A 106 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 185 (314)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEE
Confidence 3556799999999999999999873 56999999999999999998853 3579999999877421345789999
Q ss_pred EeccchhhhcCCCCChhhH--HHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISA--SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~--~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+++... ++ .+.... ..+++.++++|+|||.+++..
T Consensus 186 i~d~~~-~~----~~~~~l~t~~~l~~~~~~LkpgG~lv~~~ 222 (314)
T 2b2c_A 186 ITDSSD-PV----GPAESLFGQSYYELLRDALKEDGILSSQG 222 (314)
T ss_dssp EECCC------------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCC-CC----CcchhhhHHHHHHHHHhhcCCCeEEEEEC
Confidence 987642 22 011222 789999999999999999865
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=99.42 E-value=6.7e-13 Score=109.43 Aligned_cols=115 Identities=13% Similarity=0.161 Sum_probs=87.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCC---CCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFF---EDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~---~~~~~D~v 119 (252)
..++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++... .+++++++|+.+.+.. ..++||+|
T Consensus 81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 160 (274)
T 3ajd_A 81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEIFFDKI 160 (274)
T ss_dssp CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhhhccccCCEE
Confidence 356779999999999999999885 3469999999999999999988543 3789999999876511 25689999
Q ss_pred EeccchhhhcCCC-----------CChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 120 IDKGTLDSLMCGT-----------NAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 120 ~~~~~l~~~~~~~-----------~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+++..+.....-. .-......+++++.++|||||.++++++.
T Consensus 161 l~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~stcs 213 (274)
T 3ajd_A 161 LLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCS 213 (274)
T ss_dssp EEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred EEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEECC
Confidence 9985433210000 00134578999999999999999998865
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.42 E-value=9.5e-13 Score=103.17 Aligned_cols=106 Identities=15% Similarity=0.353 Sum_probs=78.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC---CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-------------
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG---YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF------------- 110 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~---~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~------------- 110 (252)
++++.+|||+|||+|.++..+++.. ..+++|+|+++.+ ..++++++++|+.+.+.
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~---------~~~~v~~~~~d~~~~~~~~~~~~~~i~~~~ 90 (201)
T 2plw_A 20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD---------PIPNVYFIQGEIGKDNMNNIKNINYIDNMN 90 (201)
T ss_dssp CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC---------CCTTCEEEECCTTTTSSCCC----------
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC---------CCCCceEEEccccchhhhhhcccccccccc
Confidence 4677899999999999999999873 3689999999831 22478999999987640
Q ss_pred -----------CCCCCeeEEEeccchhhhcCCCCChhh------HHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 111 -----------FEDESFDAVIDKGTLDSLMCGTNAPIS------ASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 111 -----------~~~~~~D~v~~~~~l~~~~~~~~~~~~------~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+++++||+|+++.++++. +....+. ..+++++++++|+|||.+++..+..+
T Consensus 91 ~~~~~~~~~~~~~~~~fD~v~~~~~~~~~--g~~~~d~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~ 158 (201)
T 2plw_A 91 NNSVDYKLKEILQDKKIDIILSDAAVPCI--GNKIDDHLNSCELTLSITHFMEQYINIGGTYIVKMYLGS 158 (201)
T ss_dssp -CHHHHHHHHHHTTCCEEEEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECST
T ss_pred chhhHHHHHhhcCCCcccEEEeCCCcCCC--CCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEeCCC
Confidence 245689999998876652 0000011 23588999999999999998776543
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-13 Score=108.65 Aligned_cols=103 Identities=13% Similarity=0.148 Sum_probs=83.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCC-CC----CCCeeE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSF-FE----DESFDA 118 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~-~~----~~~~D~ 118 (252)
++.+|||+|||+|..+..++.. + ..+++++|+++.+++.++++++.. ++++++++|+.+... .. .++||+
T Consensus 64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~ 143 (225)
T 3tr6_A 64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAGQAWQYDL 143 (225)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTTCTTCEEE
T ss_pred CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhccCCCCccE
Confidence 5679999999999999999987 2 469999999999999999988542 359999999866421 11 168999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|++... ..+...+++++.++|+|||++++.+..
T Consensus 144 v~~~~~----------~~~~~~~l~~~~~~L~pgG~lv~~~~~ 176 (225)
T 3tr6_A 144 IYIDAD----------KANTDLYYEESLKLLREGGLIAVDNVL 176 (225)
T ss_dssp EEECSC----------GGGHHHHHHHHHHHEEEEEEEEEECSS
T ss_pred EEECCC----------HHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 997543 255678999999999999999986644
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.41 E-value=3.9e-13 Score=108.05 Aligned_cols=103 Identities=15% Similarity=0.183 Sum_probs=84.0
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCC--CCCeeEEEe
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFE--DESFDAVID 121 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~--~~~~D~v~~ 121 (252)
.++.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++... ++++++++|+.+..... +++||+|++
T Consensus 53 ~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~ 132 (233)
T 2gpy_A 53 AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLELYPLFDVLFI 132 (233)
T ss_dssp HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHTTSCCEEEEEE
T ss_pred cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcccCCCccEEEE
Confidence 356799999999999999999873 459999999999999999987542 36899999998752122 568999998
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.... .+...+++.+.++|+|||.+++.+.
T Consensus 133 ~~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~ 161 (233)
T 2gpy_A 133 DAAK----------GQYRRFFDMYSPMVRPGGLILSDNV 161 (233)
T ss_dssp EGGG----------SCHHHHHHHHGGGEEEEEEEEEETT
T ss_pred CCCH----------HHHHHHHHHHHHHcCCCeEEEEEcC
Confidence 6553 3557889999999999999998653
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.41 E-value=2.8e-12 Score=100.09 Aligned_cols=114 Identities=17% Similarity=0.311 Sum_probs=82.2
Q ss_pred hHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC------
Q 025475 39 LRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF------ 110 (252)
Q Consensus 39 l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~------ 110 (252)
+.+++.+. ++++.+|||+|||+|.++..+++. ..+|+|+|+++.. ..++++++++|+.+...
T Consensus 13 L~ei~~~~~~~~~g~~VLDlG~G~G~~s~~la~~-~~~V~gvD~~~~~---------~~~~v~~~~~D~~~~~~~~~~~~ 82 (191)
T 3dou_A 13 LEFLLDRYRVVRKGDAVIEIGSSPGGWTQVLNSL-ARKIISIDLQEME---------EIAGVRFIRCDIFKETIFDDIDR 82 (191)
T ss_dssp HHHHHHHHCCSCTTCEEEEESCTTCHHHHHHTTT-CSEEEEEESSCCC---------CCTTCEEEECCTTSSSHHHHHHH
T ss_pred HHHHHHHcCCCCCCCEEEEEeecCCHHHHHHHHc-CCcEEEEeccccc---------cCCCeEEEEccccCHHHHHHHHH
Confidence 44445444 567889999999999999999988 4599999999741 23579999999988641
Q ss_pred -CC---CCCeeEEEeccchhhhcCCC------CChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 111 -FE---DESFDAVIDKGTLDSLMCGT------NAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 111 -~~---~~~~D~v~~~~~l~~~~~~~------~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+. .++||+|+++...... +. ........+++.+.++|+|||.+++..+..+.
T Consensus 83 ~~~~~~~~~~D~Vlsd~~~~~~--g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k~~~~~~ 144 (191)
T 3dou_A 83 ALREEGIEKVDDVVSDAMAKVS--GIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLKQFQGDM 144 (191)
T ss_dssp HHHHHTCSSEEEEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEECSTH
T ss_pred HhhcccCCcceEEecCCCcCCC--CCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEEEcCCCC
Confidence 01 1489999997532211 00 01123467889999999999999998876655
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.41 E-value=7.5e-13 Score=114.75 Aligned_cols=130 Identities=19% Similarity=0.226 Sum_probs=95.9
Q ss_pred eeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C-C-CCeEEEccccC
Q 025475 32 WYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I-P-QLKYLQMDVRD 107 (252)
Q Consensus 32 ~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~-~-~v~~~~~d~~~ 107 (252)
+++........+... .++.+|||+|||+|.++..++..|..+|+++|+|+.+++.|++++.. . . +++++++|+.+
T Consensus 204 ff~~~~~~~~~l~~~-~~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~~~~~D~~~ 282 (396)
T 3c0k_A 204 YYLDQRDSRLATRRY-VENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFK 282 (396)
T ss_dssp SCGGGHHHHHHHHHH-CTTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEESCHHH
T ss_pred cCcCHHHHHHHHHHh-hCCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECCHHH
Confidence 333333344555554 56779999999999999999998766999999999999999998853 2 3 68999999987
Q ss_pred CCC-C--CCCCeeEEEeccchhhhc--CCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 108 MSF-F--EDESFDAVIDKGTLDSLM--CGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 108 ~~~-~--~~~~~D~v~~~~~l~~~~--~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
... . ...+||+|+++.+..... ...........++.++.++|+|||.+++++...
T Consensus 283 ~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 342 (396)
T 3c0k_A 283 LLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLTFSCSG 342 (396)
T ss_dssp HHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 631 1 146899999986532110 000111567889999999999999999988653
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-12 Score=112.59 Aligned_cols=103 Identities=16% Similarity=0.226 Sum_probs=84.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccC-CCCCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRD-MSFFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~-~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~-~~~~~~~~~D~v~~~~~ 124 (252)
++.+|||+| |+|.++..++..+. .+++++|+++.+++.|+++++. ..+++++++|+.+ ++...+++||+|+++.+
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~~~p 250 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIFTFDLRKPLPDYALHKFDTFITDPP 250 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEECCCTTSCCCTTTSSCBSEEEECCC
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEEChhhhhchhhccCCccEEEECCC
Confidence 567999999 99999999988863 6999999999999999999853 2379999999988 54113468999999987
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEE-EEEEc
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIY-MLITY 160 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l-~i~~~ 160 (252)
++.. . ...+++++.++|+|||.+ ++...
T Consensus 251 ~~~~-------~-~~~~l~~~~~~LkpgG~~~~~~~~ 279 (373)
T 2qm3_A 251 ETLE-------A-IRAFVGRGIATLKGPRCAGYFGIT 279 (373)
T ss_dssp SSHH-------H-HHHHHHHHHHTBCSTTCEEEEEEC
T ss_pred CchH-------H-HHHHHHHHHHHcccCCeEEEEEEe
Confidence 7654 3 588999999999999954 44443
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.40 E-value=3.7e-13 Score=106.43 Aligned_cols=100 Identities=12% Similarity=0.136 Sum_probs=80.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++.+|||+|||+|..+..+++.. ..+++++|+++.+++.++++++.. ++++++++|..+..+..++ ||+|++..
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~-fD~v~~~~ 134 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQRD-IDILFMDC 134 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTCCS-EEEEEEET
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccCCC-CCEEEEcC
Confidence 46699999999999999999872 459999999999999999887532 2589999998765213345 99999863
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. . .+...+++++.++|+|||.+++.+
T Consensus 135 ~---~-------~~~~~~l~~~~~~LkpgG~lv~~~ 160 (210)
T 3c3p_A 135 D---V-------FNGADVLERMNRCLAKNALLIAVN 160 (210)
T ss_dssp T---T-------SCHHHHHHHHGGGEEEEEEEEEES
T ss_pred C---h-------hhhHHHHHHHHHhcCCCeEEEEEC
Confidence 2 2 566789999999999999998754
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=110.67 Aligned_cols=104 Identities=21% Similarity=0.283 Sum_probs=81.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC-------------CCCCeEEEccccCCC-C
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE-------------IPQLKYLQMDVRDMS-F 110 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~-------------~~~v~~~~~d~~~~~-~ 110 (252)
+.++.+|||+|||+|.++..++.. | ..+++++|+++.+++.|++++.. ..+++++++|+.+.. .
T Consensus 103 ~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~~d~~~~~~~ 182 (336)
T 2b25_A 103 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 182 (336)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEECChHHcccc
Confidence 567789999999999999999987 5 36999999999999999998752 247999999998863 2
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+++++||+|+++.. ....++.++.++|+|||.+++.....
T Consensus 183 ~~~~~fD~V~~~~~------------~~~~~l~~~~~~LkpgG~lv~~~~~~ 222 (336)
T 2b25_A 183 IKSLTFDAVALDML------------NPHVTLPVFYPHLKHGGVCAVYVVNI 222 (336)
T ss_dssp -----EEEEEECSS------------STTTTHHHHGGGEEEEEEEEEEESSH
T ss_pred cCCCCeeEEEECCC------------CHHHHHHHHHHhcCCCcEEEEEeCCH
Confidence 55678999998532 22337899999999999999877643
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-13 Score=115.05 Aligned_cols=126 Identities=19% Similarity=0.212 Sum_probs=93.3
Q ss_pred eeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCC
Q 025475 32 WYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMS 109 (252)
Q Consensus 32 ~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~ 109 (252)
|+.........+... ++.+|||+|||+|.++..++.. ..+|+++|+|+.+++.|++++... .+++++++|+.+..
T Consensus 194 ~f~~~~~~~~~~~~~--~~~~VLDlg~G~G~~~~~la~~-~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~~d~~~~~ 270 (382)
T 1wxx_A 194 AYLDQRENRLYMERF--RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLL 270 (382)
T ss_dssp CCGGGHHHHHHGGGC--CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHH
T ss_pred cccchHHHHHHHHhc--CCCeEEEeeeccCHHHHHHHHh-CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEECCHHHHH
Confidence 333333334444443 6779999999999999999988 568999999999999999998543 35899999998763
Q ss_pred C-C--CCCCeeEEEeccchhhhcCCC----CChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 110 F-F--EDESFDAVIDKGTLDSLMCGT----NAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 110 ~-~--~~~~~D~v~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
. . ...+||+|+++.+.... +. ........++..+.++|+|||.++++++..
T Consensus 271 ~~~~~~~~~fD~Ii~dpP~~~~--~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~ 328 (382)
T 1wxx_A 271 RRLEKEGERFDLVVLDPPAFAK--GKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSH 328 (382)
T ss_dssp HHHHHTTCCEEEEEECCCCSCC--STTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHHHhcCCCeeEEEECCCCCCC--ChhHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 1 1 25689999997653211 00 001556788999999999999999988654
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.7e-12 Score=104.94 Aligned_cols=100 Identities=14% Similarity=0.213 Sum_probs=83.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++. ..+++++|+++.+++.++++.... +++++..+|+.+.. ..+++||+|+++
T Consensus 90 ~~~~~vldiG~G~G~~~~~l~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~-~~~~~~D~v~~~-- 165 (248)
T 2yvl_A 90 NKEKRVLEFGTGSGALLAVLSEV-AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAE-VPEGIFHAAFVD-- 165 (248)
T ss_dssp CTTCEEEEECCTTSHHHHHHHHH-SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSC-CCTTCBSEEEEC--
T ss_pred CCCCEEEEeCCCccHHHHHHHHh-CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhcc-cCCCcccEEEEC--
Confidence 46779999999999999999988 559999999999999999987532 47899999998753 356789999973
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
. .++..+++++.++|+|||.+++....
T Consensus 166 ---~-------~~~~~~l~~~~~~L~~gG~l~~~~~~ 192 (248)
T 2yvl_A 166 ---V-------REPWHYLEKVHKSLMEGAPVGFLLPT 192 (248)
T ss_dssp ---S-------SCGGGGHHHHHHHBCTTCEEEEEESS
T ss_pred ---C-------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 2 34567799999999999999998864
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.2e-13 Score=108.26 Aligned_cols=99 Identities=11% Similarity=0.146 Sum_probs=78.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC---CCCCCCCeeEEE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM---SFFEDESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~----~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~---~~~~~~~~D~v~ 120 (252)
++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+.. .++++++++|+.+. +.....+||+|+
T Consensus 81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~~---~~~v~~~~gD~~~~~~l~~~~~~~fD~I~ 157 (236)
T 2bm8_A 81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPASD---MENITLHQGDCSDLTTFEHLREMAHPLIF 157 (236)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGGG---CTTEEEEECCSSCSGGGGGGSSSCSSEEE
T ss_pred CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhcc---CCceEEEECcchhHHHHHhhccCCCCEEE
Confidence 4569999999999999999886 2 46999999999998888732 25799999999885 312334799999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHH-cccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSR-LLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~-~L~~gG~l~i~~~ 160 (252)
+... | .+...++.++.+ +|+|||++++.+.
T Consensus 158 ~d~~--~--------~~~~~~l~~~~r~~LkpGG~lv~~d~ 188 (236)
T 2bm8_A 158 IDNA--H--------ANTFNIMKWAVDHLLEEGDYFIIEDM 188 (236)
T ss_dssp EESS--C--------SSHHHHHHHHHHHTCCTTCEEEECSC
T ss_pred ECCc--h--------HhHHHHHHHHHHhhCCCCCEEEEEeC
Confidence 8654 2 245678999997 9999999998653
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=7.8e-13 Score=106.28 Aligned_cols=116 Identities=13% Similarity=0.125 Sum_probs=92.8
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCC
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~ 114 (252)
..+-..+...+++..+|||+|||+|.++..+... +..+|+++|+++.+++.+++++...+ ..++...|....+ +.+
T Consensus 120 D~fY~~i~~~i~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~g~~~~~~v~D~~~~~--p~~ 197 (281)
T 3lcv_B 120 DEFYRELFRHLPRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRLNVPHRTNVADLLEDR--LDE 197 (281)
T ss_dssp HHHHHHHGGGSCCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHTTCCEEEEECCTTTSC--CCS
T ss_pred HHHHHHHHhccCCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhcCCCceEEEeeecccC--CCC
Confidence 3344445555666779999999999999999887 46799999999999999999986533 5788888887664 567
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
++|+++++-+++|+ ..+.....+ ++.+.|+++|.++-...
T Consensus 198 ~~DvaL~lkti~~L-----e~q~kg~g~-~ll~aL~~~~vvVSfp~ 237 (281)
T 3lcv_B 198 PADVTLLLKTLPCL-----ETQQRGSGW-EVIDIVNSPNIVVTFPT 237 (281)
T ss_dssp CCSEEEETTCHHHH-----HHHSTTHHH-HHHHHSSCSEEEEEEEC
T ss_pred CcchHHHHHHHHHh-----hhhhhHHHH-HHHHHhCCCCEEEeccc
Confidence 89999999999999 444445566 89999999999876554
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.38 E-value=4e-13 Score=109.34 Aligned_cols=111 Identities=12% Similarity=0.164 Sum_probs=76.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--C-CCeEEEccccCC-C-CCC---CCCeeEE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--P-QLKYLQMDVRDM-S-FFE---DESFDAV 119 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~-~v~~~~~d~~~~-~-~~~---~~~~D~v 119 (252)
++.+|||+|||+|.++..++... ..+++++|+++.|++.|++++... . +++++++|+.+. . .++ +++||+|
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i 144 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 144 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhhhcccCCcccEE
Confidence 46699999999999999888762 359999999999999999988542 2 489999998762 1 133 2589999
Q ss_pred EeccchhhhcCC---C--C---ChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCG---T--N---APISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~---~--~---~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+++.++++..-. . + .......++.+++++|+|||.+.+..
T Consensus 145 ~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG~l~~~~ 192 (254)
T 2h00_A 145 MCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGGELEFVK 192 (254)
T ss_dssp EECCCCC-------------------------CTTTTHHHHTHHHHHH
T ss_pred EECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCCEEEEEH
Confidence 999887754100 0 0 00122356788899999999877654
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.4e-12 Score=102.45 Aligned_cols=102 Identities=19% Similarity=0.117 Sum_probs=83.5
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+. +..+++++|+++.+++.+++++.. ..+..+..+|....+ +.+++|+|++.-++|
T Consensus 104 ~~p~~VLDlGCG~gpLal~~~--~~~~y~a~DId~~~i~~ar~~~~~~g~~~~~~v~D~~~~~--~~~~~DvvLllk~lh 179 (253)
T 3frh_A 104 ETPRRVLDIACGLNPLALYER--GIASVWGCDIHQGLGDVITPFAREKDWDFTFALQDVLCAP--PAEAGDLALIFKLLP 179 (253)
T ss_dssp CCCSEEEEETCTTTHHHHHHT--TCSEEEEEESBHHHHHHHHHHHHHTTCEEEEEECCTTTSC--CCCBCSEEEEESCHH
T ss_pred CCCCeEEEecCCccHHHHHhc--cCCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEeecccCC--CCCCcchHHHHHHHH
Confidence 567799999999999999888 456999999999999999999854 346788999998776 445899999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+ ..+.....+ ++.+.|+++|.++-..
T Consensus 180 ~L-----E~q~~~~~~-~ll~aL~~~~vvVsfP 206 (253)
T 3frh_A 180 LL-----EREQAGSAM-ALLQSLNTPRMAVSFP 206 (253)
T ss_dssp HH-----HHHSTTHHH-HHHHHCBCSEEEEEEE
T ss_pred Hh-----hhhchhhHH-HHHHHhcCCCEEEEcC
Confidence 99 444445555 7888899998876654
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=111.61 Aligned_cols=101 Identities=16% Similarity=0.108 Sum_probs=84.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++..+|||+|||+|.++..+++.. ..+++++|+ +.+++.+++ .++++++.+|+.+ + ++ +||+|++..++|
T Consensus 192 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~----~~~v~~~~~d~~~-~-~~--~~D~v~~~~vlh 262 (358)
T 1zg3_A 192 EGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG----NENLNFVGGDMFK-S-IP--SADAVLLKWVLH 262 (358)
T ss_dssp HTCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC----CSSEEEEECCTTT-C-CC--CCSEEEEESCGG
T ss_pred cCCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc----CCCcEEEeCccCC-C-CC--CceEEEEccccc
Confidence 356799999999999999999884 458999999 788876654 2469999999987 4 55 499999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccC---CcEEEEEEcCC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKP---GGIYMLITYGD 162 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~---gG~l~i~~~~~ 162 (252)
|+ +++...+++++++++|+| ||++++.++..
T Consensus 263 ~~-----~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~ 296 (358)
T 1zg3_A 263 DW-----NDEQSLKILKNSKEAISHKGKDGKVIIIDISI 296 (358)
T ss_dssp GS-----CHHHHHHHHHHHHHHTGGGGGGCEEEEEECEE
T ss_pred CC-----CHHHHHHHHHHHHHhCCCCCCCcEEEEEEecc
Confidence 99 555566999999999999 99999988643
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=5.2e-12 Score=108.60 Aligned_cols=112 Identities=16% Similarity=0.143 Sum_probs=85.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||+|.++..++..+ ..+++|+|+++.+++.|+.++... ++++++++|+.+++ .++++||+|+++
T Consensus 215 ~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~-~~~~~fD~Ii~n 293 (373)
T 3tm4_A 215 ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLS-QYVDSVDFAISN 293 (373)
T ss_dssp TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGG-GTCSCEEEEEEE
T ss_pred cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCC-cccCCcCEEEEC
Confidence 5677899999999999999999986 348999999999999999998543 37999999999987 667889999998
Q ss_pred cchhhhcCCCCChhh-HHHHHHHHHHcccCCcEEEEEEcC
Q 025475 123 GTLDSLMCGTNAPIS-ASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.++............ ...+++++.++| +|.+++....
T Consensus 294 pPyg~r~~~~~~~~~ly~~~~~~l~r~l--~g~~~~i~~~ 331 (373)
T 3tm4_A 294 LPYGLKIGKKSMIPDLYMKFFNELAKVL--EKRGVFITTE 331 (373)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHHE--EEEEEEEESC
T ss_pred CCCCcccCcchhHHHHHHHHHHHHHHHc--CCeEEEEECC
Confidence 876543111111122 377889999988 5555555543
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-12 Score=107.34 Aligned_cols=101 Identities=13% Similarity=0.250 Sum_probs=84.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+.++.+|||+|||+|.++..+++. + ..+++++|+++.+++.+++++... ++++++++|+.+. +++++||+|++
T Consensus 110 ~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~--~~~~~~D~V~~ 187 (277)
T 1o54_A 110 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG--FDEKDVDALFL 187 (277)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--CSCCSEEEEEE
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHc--ccCCccCEEEE
Confidence 456779999999999999999987 4 569999999999999999987543 3689999999876 45568999997
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+ . .++..+++++.++|+|||.+++....
T Consensus 188 ~-----~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (277)
T 1o54_A 188 D-----V-------PDPWNYIDKCWEALKGGGRFATVCPT 215 (277)
T ss_dssp C-----C-------SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred C-----C-------cCHHHHHHHHHHHcCCCCEEEEEeCC
Confidence 4 2 34567899999999999999998864
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-12 Score=106.70 Aligned_cols=95 Identities=12% Similarity=0.148 Sum_probs=79.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+.+.+|||+|||+|..+..+++.+ .+++++|+++.+++.|++++.. .++++++.+|..+.. ++||+|++
T Consensus 71 ~~~~~VL~iG~G~G~~~~~ll~~~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~----~~fD~Ii~ 145 (262)
T 2cmg_A 71 KELKEVLIVDGFDLELAHQLFKYD-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI----KKYDLIFC 145 (262)
T ss_dssp SCCCEEEEESSCCHHHHHHHTTSS-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC----CCEEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH----hhCCEEEE
Confidence 455799999999999999998886 7999999999999999987642 357999999998763 68999998
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.. .++..+++.+.++|+|||.+++..
T Consensus 146 d~------------~dp~~~~~~~~~~L~pgG~lv~~~ 171 (262)
T 2cmg_A 146 LQ------------EPDIHRIDGLKRMLKEDGVFISVA 171 (262)
T ss_dssp SS------------CCCHHHHHHHHTTEEEEEEEEEEE
T ss_pred CC------------CChHHHHHHHHHhcCCCcEEEEEc
Confidence 62 122348999999999999998865
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-13 Score=111.58 Aligned_cols=102 Identities=14% Similarity=0.110 Sum_probs=82.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCC-----CCCeeE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFE-----DESFDA 118 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~-----~~~~D~ 118 (252)
++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+++++.. ++++++++|+.+..... .++||+
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~ 139 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPALDTLHSLLNEGGEHQFDF 139 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCHHHHHHHHHHHHCSSCEEE
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHhhccCCCCEeE
Confidence 5669999999999999999985 2 459999999999999999988532 37999999997753111 478999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|++... . .....+++++.++|+|||.+++-+.
T Consensus 140 V~~d~~---~-------~~~~~~l~~~~~~LkpGG~lv~d~~ 171 (242)
T 3r3h_A 140 IFIDAD---K-------TNYLNYYELALKLVTPKGLIAIDNI 171 (242)
T ss_dssp EEEESC---G-------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred EEEcCC---h-------HHhHHHHHHHHHhcCCCeEEEEECC
Confidence 998654 2 5567789999999999999998654
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-12 Score=104.24 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=82.5
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCC-CC-----------
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDM-SF----------- 110 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~-~~----------- 110 (252)
.++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++...+ +++++++|+.+. +.
T Consensus 59 ~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~ 138 (239)
T 2hnk_A 59 SGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALETLQVLIDSKSAPSWA 138 (239)
T ss_dssp HTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCSSCCGGG
T ss_pred hCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHHHHHHHhhccccccc
Confidence 356799999999999999999873 4599999999999999999875422 489999998653 10
Q ss_pred --CCC--CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 111 --FED--ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 111 --~~~--~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++ ++||+|++.... .....+++++.++|+|||.+++.+.
T Consensus 139 ~~f~~~~~~fD~I~~~~~~----------~~~~~~l~~~~~~L~pgG~lv~~~~ 182 (239)
T 2hnk_A 139 SDFAFGPSSIDLFFLDADK----------ENYPNYYPLILKLLKPGGLLIADNV 182 (239)
T ss_dssp TTTCCSTTCEEEEEECSCG----------GGHHHHHHHHHHHEEEEEEEEEECS
T ss_pred ccccCCCCCcCEEEEeCCH----------HHHHHHHHHHHHHcCCCeEEEEEcc
Confidence 122 689999987543 4456889999999999999998764
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=8.4e-13 Score=107.22 Aligned_cols=102 Identities=10% Similarity=0.074 Sum_probs=82.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCC-CCC-----CCCCe
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM-SFF-----EDESF 116 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~-~~~-----~~~~~ 116 (252)
.++.+|||+|||+|..+..+++. . ..+++++|+++.+++.+++++... ++++++++|+.+. +.+ ..++|
T Consensus 78 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 157 (247)
T 1sui_A 78 INAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSY 157 (247)
T ss_dssp TTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGGGTTCB
T ss_pred hCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccCCCCCE
Confidence 34569999999999999999986 2 459999999999999999988543 3689999998764 212 15789
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+|++... . .+...+++++.++|+|||.+++..
T Consensus 158 D~V~~d~~---~-------~~~~~~l~~~~~~LkpGG~lv~d~ 190 (247)
T 1sui_A 158 DFIFVDAD---K-------DNYLNYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_dssp SEEEECSC---S-------TTHHHHHHHHHHHBCTTCCEEEEC
T ss_pred EEEEEcCc---h-------HHHHHHHHHHHHhCCCCeEEEEec
Confidence 99998643 1 456788999999999999998755
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=6.3e-13 Score=106.88 Aligned_cols=108 Identities=15% Similarity=0.205 Sum_probs=72.0
Q ss_pred hHHHHHhhC--CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEE-EccccCCC--CCCC
Q 025475 39 LRPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYL-QMDVRDMS--FFED 113 (252)
Q Consensus 39 l~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~-~~d~~~~~--~~~~ 113 (252)
+.+.+.... .++.+|||+|||+|.++..+++.|..+|+|+|+|+.|++.++++... +... ..++.... .+..
T Consensus 25 L~~~L~~~~~~~~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~~~~---~~~~~~~~~~~~~~~~~~~ 101 (232)
T 3opn_A 25 LEKALKEFHLEINGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRSDER---VVVMEQFNFRNAVLADFEQ 101 (232)
T ss_dssp HHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHTCTT---EEEECSCCGGGCCGGGCCS
T ss_pred HHHHHHHcCCCCCCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHhCcc---ccccccceEEEeCHhHcCc
Confidence 444454442 24569999999999999999999866999999999999998776432 1111 11221111 0122
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..+|.+.+..++.++ ..++++++++|+|||.+++..
T Consensus 102 ~~~d~~~~D~v~~~l----------~~~l~~i~rvLkpgG~lv~~~ 137 (232)
T 3opn_A 102 GRPSFTSIDVSFISL----------DLILPPLYEILEKNGEVAALI 137 (232)
T ss_dssp CCCSEEEECCSSSCG----------GGTHHHHHHHSCTTCEEEEEE
T ss_pred CCCCEEEEEEEhhhH----------HHHHHHHHHhccCCCEEEEEE
Confidence 224555555444333 568999999999999998864
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=3e-12 Score=99.80 Aligned_cols=106 Identities=17% Similarity=0.295 Sum_probs=77.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CC---------CcEEEEeCCHHHHHHHHHhhcCCCCCeEE-EccccCCCC-----
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GY---------EDIVNIDISSVAIDMMKMKYEEIPQLKYL-QMDVRDMSF----- 110 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~---------~~v~~vD~s~~~i~~a~~~~~~~~~v~~~-~~d~~~~~~----- 110 (252)
++++.+|||+|||+|.++..+++. +. .+++++|+++.+ ..++++++ ++|+.+...
T Consensus 20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~---------~~~~~~~~~~~d~~~~~~~~~~~ 90 (196)
T 2nyu_A 20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF---------PLEGATFLCPADVTDPRTSQRIL 90 (196)
T ss_dssp CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC---------CCTTCEEECSCCTTSHHHHHHHH
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc---------cCCCCeEEEeccCCCHHHHHHHH
Confidence 567889999999999999999987 43 689999999831 12467888 888776420
Q ss_pred --CCCCCeeEEEeccchhhhcCCCCChhhH-------HHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 111 --FEDESFDAVIDKGTLDSLMCGTNAPISA-------SQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 111 --~~~~~~D~v~~~~~l~~~~~~~~~~~~~-------~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+++++||+|+++.+++.... ...+. ..+++++.++|+|||.+++..+..+.
T Consensus 91 ~~~~~~~fD~V~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~~~~ 150 (196)
T 2nyu_A 91 EVLPGRRADVILSDMAPNATGF---RDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTWAGSQ 150 (196)
T ss_dssp HHSGGGCEEEEEECCCCCCCSC---HHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCSGG
T ss_pred HhcCCCCCcEEEeCCCCCCCCC---cccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 23458999999765442100 00222 58899999999999999998876543
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=2.7e-12 Score=108.79 Aligned_cols=105 Identities=21% Similarity=0.230 Sum_probs=85.6
Q ss_pred HHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeE
Q 025475 42 FVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 42 ~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
.+...+.++.+|||+|||+|.++.. +. +..+++++|+|+.+++.++++++.. ++++++++|+.+.. ++||+
T Consensus 188 ~i~~~~~~~~~VLDlg~G~G~~~l~-a~-~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~----~~fD~ 261 (336)
T 2yx1_A 188 RIMKKVSLNDVVVDMFAGVGPFSIA-CK-NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD----VKGNR 261 (336)
T ss_dssp HHHHHCCTTCEEEETTCTTSHHHHH-TT-TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC----CCEEE
T ss_pred HHHHhcCCCCEEEEccCccCHHHHh-cc-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc----CCCcE
Confidence 4445566788999999999999999 77 5669999999999999999998542 36899999998874 68999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+++.+.. ...++..+.++|+|||.+++.++...
T Consensus 262 Vi~dpP~~-----------~~~~l~~~~~~L~~gG~l~~~~~~~~ 295 (336)
T 2yx1_A 262 VIMNLPKF-----------AHKFIDKALDIVEEGGVIHYYTIGKD 295 (336)
T ss_dssp EEECCTTT-----------GGGGHHHHHHHEEEEEEEEEEEEESS
T ss_pred EEECCcHh-----------HHHHHHHHHHHcCCCCEEEEEEeecC
Confidence 99875422 23678889999999999998876543
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.33 E-value=7.9e-13 Score=101.57 Aligned_cols=89 Identities=18% Similarity=0.306 Sum_probs=76.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---CCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---EDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||. +++|+|+.|++.|+++... +++++++|+.+++ + ++++||+|++..
T Consensus 10 ~~~g~~vL~~~~g~---------------v~vD~s~~ml~~a~~~~~~--~~~~~~~d~~~~~-~~~~~~~~fD~V~~~~ 71 (176)
T 2ld4_A 10 ISAGQFVAVVWDKS---------------SPVEALKGLVDKLQALTGN--EGRVSVENIKQLL-QSAHKESSFDIILSGL 71 (176)
T ss_dssp CCTTSEEEEEECTT---------------SCHHHHHHHHHHHHHHTTT--TSEEEEEEGGGGG-GGCCCSSCEEEEEECC
T ss_pred CCCCCEEEEecCCc---------------eeeeCCHHHHHHHHHhccc--CcEEEEechhcCc-cccCCCCCEeEEEECC
Confidence 56788999999986 1399999999999998753 5899999999887 5 678999999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++||+ . .+...++++++++|||||++++..
T Consensus 72 ~l~~~-----~-~~~~~~l~~~~r~LkpgG~l~~~~ 101 (176)
T 2ld4_A 72 VPGST-----T-LHSAEILAEIARILRPGGCLFLKE 101 (176)
T ss_dssp STTCC-----C-CCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhhhc-----c-cCHHHHHHHHHHHCCCCEEEEEEc
Confidence 99986 2 345889999999999999999954
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.8e-12 Score=103.00 Aligned_cols=77 Identities=17% Similarity=0.251 Sum_probs=65.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++... ++++++++|+.+.+ ++ +||+|+++.+
T Consensus 27 ~~~~~VLDiG~G~G~lt~~L~~~~~-~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~~-~~--~fD~vv~nlp 102 (285)
T 1zq9_A 27 RPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD-LP--FFDTCVANLP 102 (285)
T ss_dssp CTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-CC--CCSEEEEECC
T ss_pred CCCCEEEEEcCcccHHHHHHHhhCC-EEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceeccc-ch--hhcEEEEecC
Confidence 4667999999999999999999864 9999999999999999987543 36899999998876 44 7999999877
Q ss_pred hhhh
Q 025475 125 LDSL 128 (252)
Q Consensus 125 l~~~ 128 (252)
++..
T Consensus 103 y~~~ 106 (285)
T 1zq9_A 103 YQIS 106 (285)
T ss_dssp GGGH
T ss_pred cccc
Confidence 6654
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.9e-11 Score=107.55 Aligned_cols=116 Identities=18% Similarity=0.155 Sum_probs=87.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC-CCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF-FEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~-~~~~~~D~v~~ 121 (252)
..++.+|||+|||+|..+..++... ..+++++|+++.+++.+++++.. ..+++++++|+.+.+. +.+++||+|++
T Consensus 257 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~~~~fD~Vl~ 336 (450)
T 2yxl_A 257 PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGEEVADKVLL 336 (450)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSSCSSCEEEEEE
T ss_pred CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhhccCCCCEEEE
Confidence 4567799999999999999999862 36899999999999999999854 3478999999988752 34468999998
Q ss_pred ccchhhhcCCC--C------Chhh-------HHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 122 KGTLDSLMCGT--N------APIS-------ASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 122 ~~~l~~~~~~~--~------~~~~-------~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+.++....... + .+.+ ...+++++.++|+|||.++++++..
T Consensus 337 D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvy~tcs~ 392 (450)
T 2yxl_A 337 DAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSI 392 (450)
T ss_dssp ECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTTEEEEEEEEEEESCC
T ss_pred cCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCC
Confidence 54322110000 0 0011 2678999999999999999988763
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.7e-12 Score=103.52 Aligned_cols=103 Identities=14% Similarity=0.092 Sum_probs=82.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-CC-----CCCCe
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FF-----EDESF 116 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-~~-----~~~~~ 116 (252)
.++.+|||+|||+|..+..+++. + ..+++++|+++.+++.++++++.. ++++++++|+.+.. .+ ..++|
T Consensus 69 ~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~~~~~f 148 (237)
T 3c3y_A 69 VNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQESEGSY 148 (237)
T ss_dssp TTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSTTCTTCE
T ss_pred hCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhccCCCCCc
Confidence 35669999999999999999986 2 469999999999999999988543 25899999987642 12 25689
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+|++... ..+...+++.+.++|+|||.+++...
T Consensus 149 D~I~~d~~----------~~~~~~~l~~~~~~L~pGG~lv~d~~ 182 (237)
T 3c3y_A 149 DFGFVDAD----------KPNYIKYHERLMKLVKVGGIVAYDNT 182 (237)
T ss_dssp EEEEECSC----------GGGHHHHHHHHHHHEEEEEEEEEECT
T ss_pred CEEEECCc----------hHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 99998632 25668899999999999999987653
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=7.3e-13 Score=109.13 Aligned_cols=106 Identities=18% Similarity=0.157 Sum_probs=76.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc---CCC-CCeEE--EccccCCCCCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE---EIP-QLKYL--QMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~---~~~-~v~~~--~~d~~~~~~~~~~~~D~v~ 120 (252)
+.++.+|||+|||+|.++..+++. .+|+|+|+++ |+..+++... ..+ ++.++ ++|+.+++ +++||+|+
T Consensus 80 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~---~~~fD~Vv 153 (276)
T 2wa2_A 80 VELKGTVVDLGCGRGSWSYYAASQ--PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME---PFQADTVL 153 (276)
T ss_dssp CCCCEEEEEESCTTCHHHHHHHTS--TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC---CCCCSEEE
T ss_pred CCCCCEEEEeccCCCHHHHHHHHc--CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC---CCCcCEEE
Confidence 456779999999999999999988 5999999998 5433322110 111 67888 89998864 56899999
Q ss_pred eccchhhhcCCCCChhhH--HHHHHHHHHcccCCc--EEEEEEcC
Q 025475 121 DKGTLDSLMCGTNAPISA--SQMLGEVSRLLKPGG--IYMLITYG 161 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~--~~~l~~~~~~L~~gG--~l~i~~~~ 161 (252)
++.+ ++. +.+..+.. ..+++.+.++|+||| .+++..+.
T Consensus 154 sd~~-~~~--~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~~~~~ 195 (276)
T 2wa2_A 154 CDIG-ESN--PTAAVEASRTLTVLNVISRWLEYNQGCGFCVKVLN 195 (276)
T ss_dssp ECCC-CCC--SCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEESC
T ss_pred ECCC-cCC--CchhhhHHHHHHHHHHHHHHhccCCCcEEEEEeCC
Confidence 9876 332 00000111 137899999999999 99887776
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.31 E-value=5.9e-12 Score=107.10 Aligned_cols=110 Identities=15% Similarity=0.188 Sum_probs=83.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-C-----CcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-Y-----EDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~-----~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
++.+|||+|||+|.++..+++.. . .+++|+|+++.+++.|+.+.... .++.++++|..... ..++||+|++
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~~~~i~~~D~l~~~--~~~~fD~Ii~ 207 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL--LVDPVDVVIS 207 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC--CCCCEEEEEE
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCCCceEEECCCCCcc--ccCCccEEEE
Confidence 45699999999999999888763 1 58999999999999999986421 26889999987653 4568999999
Q ss_pred ccchhhhcC-------C---CCChh-hHHHHHHHHHHcccCCcEEEEEEc
Q 025475 122 KGTLDSLMC-------G---TNAPI-SASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 122 ~~~l~~~~~-------~---~~~~~-~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+.+++++.. . ..+.. ....++..+.+.|+|||+++++..
T Consensus 208 NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~Lk~gG~~~~v~p 257 (344)
T 2f8l_A 208 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 257 (344)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHHhCCCCEEEEEEC
Confidence 998766500 0 00001 113689999999999999988873
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.8e-13 Score=108.35 Aligned_cols=106 Identities=11% Similarity=0.083 Sum_probs=75.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh-c--CCC-CCeEE--EccccCCCCCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY-E--EIP-QLKYL--QMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~-~--~~~-~v~~~--~~d~~~~~~~~~~~~D~v~ 120 (252)
+.++.+|||+|||+|.++..+++. .+|+|+|+++ ++..+++.. . ..+ ++.++ ++|+.+++ +++||+|+
T Consensus 72 ~~~g~~VLDlGcGtG~~s~~la~~--~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~---~~~fD~V~ 145 (265)
T 2oxt_A 72 VELTGRVVDLGCGRGGWSYYAASR--PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP---VERTDVIM 145 (265)
T ss_dssp CCCCEEEEEESCTTSHHHHHHHTS--TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC---CCCCSEEE
T ss_pred CCCCCEEEEeCcCCCHHHHHHHHc--CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC---CCCCcEEE
Confidence 456779999999999999999987 5999999998 532222111 0 011 67888 88998864 56899999
Q ss_pred eccchhhhcCCCCChhhH--HHHHHHHHHcccCCc--EEEEEEcC
Q 025475 121 DKGTLDSLMCGTNAPISA--SQMLGEVSRLLKPGG--IYMLITYG 161 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~--~~~l~~~~~~L~~gG--~l~i~~~~ 161 (252)
++.+ ++. +.+..+.. ..+++.+.++|+||| .+++..+.
T Consensus 146 sd~~-~~~--~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~kv~~ 187 (265)
T 2oxt_A 146 CDVG-ESS--PKWSVESERTIKILELLEKWKVKNPSADFVVKVLC 187 (265)
T ss_dssp ECCC-CCC--SCHHHHHHHHHHHHHHHHHHHHHCTTCEEEEEESC
T ss_pred EeCc-ccC--CccchhHHHHHHHHHHHHHHhccCCCeEEEEEeCC
Confidence 9876 332 00000111 137899999999999 99988776
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=99.31 E-value=4.5e-12 Score=111.06 Aligned_cols=115 Identities=13% Similarity=0.122 Sum_probs=86.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||+|..+..++.. +..+|+++|+++.+++.+++++.. ..++.++++|..++.....++||+|+++
T Consensus 103 ~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~nv~v~~~Da~~l~~~~~~~FD~Il~D 182 (456)
T 3m4x_A 103 AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSNAIVTNHAPAELVPHFSGFFDRIVVD 182 (456)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSSEEEECCCHHHHHHHHTTCEEEEEEE
T ss_pred CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhhhccccCCEEEEC
Confidence 456789999999999999999876 345899999999999999998854 3478899999887642235689999987
Q ss_pred cchhhhcCCCCCh---------------hhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 123 GTLDSLMCGTNAP---------------ISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 123 ~~l~~~~~~~~~~---------------~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..+.-......++ .....++..+.++|+|||+|+.+++.
T Consensus 183 aPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs 236 (456)
T 3m4x_A 183 APCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCT 236 (456)
T ss_dssp CCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEEee
Confidence 6532110000111 12247899999999999999998875
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.29 E-value=7.9e-12 Score=100.44 Aligned_cols=103 Identities=14% Similarity=0.114 Sum_probs=81.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC--C-CCCeEEEccccCC-CC--CCC--CCeeE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE--I-PQLKYLQMDVRDM-SF--FED--ESFDA 118 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~--~-~~v~~~~~d~~~~-~~--~~~--~~~D~ 118 (252)
++.+|||+|||+|..+..+++.. ..+++++|+++.+++.|++++.. . ++++++++|+.+. +. ..+ ++||+
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~ 151 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGKPLPEFDL 151 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSSSCCCEEE
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcCCCCCcCE
Confidence 56699999999999999999862 35899999999999999998743 2 3589999997653 11 122 68999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|++... ..+...+++++.++|+|||.+++.+..
T Consensus 152 V~~d~~----------~~~~~~~l~~~~~~LkpgG~lv~~~~~ 184 (232)
T 3cbg_A 152 IFIDAD----------KRNYPRYYEIGLNLLRRGGLMVIDNVL 184 (232)
T ss_dssp EEECSC----------GGGHHHHHHHHHHTEEEEEEEEEECTT
T ss_pred EEECCC----------HHHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 998643 256678999999999999999986643
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.29 E-value=3.4e-12 Score=102.09 Aligned_cols=103 Identities=12% Similarity=0.178 Sum_probs=82.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-CCC----CCCee
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-FFE----DESFD 117 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-~~~----~~~~D 117 (252)
.++.+|||+|||+|..+..+++. + ..+++++|+++.+++.+++++... .+++++++|+.+.. .+. .++||
T Consensus 68 ~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D 147 (229)
T 2avd_A 68 IQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFD 147 (229)
T ss_dssp TTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred cCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcCCCCCcc
Confidence 45679999999999999999986 2 459999999999999999987532 47899999986542 111 16899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+|++... ......+++++.++|+|||.+++.+.
T Consensus 148 ~v~~d~~----------~~~~~~~l~~~~~~L~pgG~lv~~~~ 180 (229)
T 2avd_A 148 VAVVDAD----------KENCSAYYERCLQLLRPGGILAVLRV 180 (229)
T ss_dssp EEEECSC----------STTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEECCC----------HHHHHHHHHHHHHHcCCCeEEEEECC
Confidence 9998643 24567889999999999999988653
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.28 E-value=1e-11 Score=109.81 Aligned_cols=113 Identities=16% Similarity=0.242 Sum_probs=85.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
++.+|||+|||+|..+..+++. + ...|+++|+++.+++.+++++.. ..++.++++|+.+++....++||+|+++..
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~g~~nv~~~~~D~~~~~~~~~~~fD~Il~D~P 196 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFDAILLDAP 196 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCCSTTHHHHSTTCEEEEEEECC
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCCHHHhhhhccccCCEEEECCC
Confidence 6789999999999999999986 2 46899999999999999999853 347899999998865224568999998643
Q ss_pred hhhhc--CCCC------Ch-------hhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 125 LDSLM--CGTN------AP-------ISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 125 l~~~~--~~~~------~~-------~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+.... ...+ .+ ....++++++.++|||||+++++++.
T Consensus 197 cSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~LvysTcs 248 (479)
T 2frx_A 197 CSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCT 248 (479)
T ss_dssp CCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHhcCCCCEEEEeccc
Confidence 22110 0000 11 12457899999999999999998875
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=6.7e-12 Score=110.15 Aligned_cols=114 Identities=18% Similarity=0.208 Sum_probs=86.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||+|||+|..+..+++. +..+|+++|+++.+++.+++++.. .. +.++++|+.+++....++||+|+++
T Consensus 99 ~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~~Da~~l~~~~~~~FD~Il~D 177 (464)
T 3m6w_A 99 PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQAPPRALAEAFGTYFHRVLLD 177 (464)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEECSCHHHHHHHHCSCEEEEEEE
T ss_pred cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEECCHHHhhhhccccCCEEEEC
Confidence 457789999999999999999976 235899999999999999999854 33 8899999887652235689999986
Q ss_pred cchhhhc--CCCC------Ch-------hhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 123 GTLDSLM--CGTN------AP-------ISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 123 ~~l~~~~--~~~~------~~-------~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..+.-.. ...+ .+ .....+++++.++|+|||+|+.+++.
T Consensus 178 ~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvysTCs 231 (464)
T 3m6w_A 178 APCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCT 231 (464)
T ss_dssp CCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTTEEEEEEEEEEESC
T ss_pred CCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEecc
Confidence 5432110 0000 01 12378899999999999999998875
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-12 Score=107.55 Aligned_cols=105 Identities=11% Similarity=0.074 Sum_probs=74.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeC----CHHHHHHHHHhhcCC--CCCeEEEc-cccCCCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDI----SSVAIDMMKMKYEEI--PQLKYLQM-DVRDMSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~----s~~~i~~a~~~~~~~--~~v~~~~~-d~~~~~~~~~~~~D~v 119 (252)
++++.+|||+|||+|.++..+++. .+|+++|+ ++.+++... .... +++.++++ |+.+++ .++||+|
T Consensus 80 ~~~g~~VLDlGcG~G~~s~~la~~--~~V~gvD~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~D~~~l~---~~~fD~V 152 (305)
T 2p41_A 80 VTPEGKVVDLGCGRGGWSYYCGGL--KNVREVKGLTKGGPGHEEPIP--MSTYGWNLVRLQSGVDVFFIP---PERCDTL 152 (305)
T ss_dssp SCCCEEEEEETCTTSHHHHHHHTS--TTEEEEEEECCCSTTSCCCCC--CCSTTGGGEEEECSCCTTTSC---CCCCSEE
T ss_pred CCCCCEEEEEcCCCCHHHHHHHhc--CCEEEEeccccCchhHHHHHH--hhhcCCCCeEEEeccccccCC---cCCCCEE
Confidence 456789999999999999999988 48999999 554332111 1111 46888888 887664 4589999
Q ss_pred Eeccchh---hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 120 IDKGTLD---SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 120 ~~~~~l~---~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+++...+ +. .+......++..+.++|+|||.+++..+..
T Consensus 153 ~sd~~~~~g~~~----~d~~~~l~~L~~~~~~LkpGG~~v~kv~~~ 194 (305)
T 2p41_A 153 LCDIGESSPNPT----VEAGRTLRVLNLVENWLSNNTQFCVKVLNP 194 (305)
T ss_dssp EECCCCCCSSHH----HHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred EECCccccCcch----hhHHHHHHHHHHHHHHhCCCCEEEEEeCCC
Confidence 9976643 22 000111257899999999999998877655
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-11 Score=106.57 Aligned_cols=116 Identities=15% Similarity=0.140 Sum_probs=87.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCC-CCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSF-FEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~-~~~~~~D~v~~~~ 123 (252)
..++.+|||+|||+|..+..+++.. ..+++++|+++.+++.+++++...+ +++++++|+.+.+. ++.++||+|+++.
T Consensus 244 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~g~~~~~~~~D~~~~~~~~~~~~fD~Vl~D~ 323 (429)
T 1sqg_A 244 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 323 (429)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHcCCCeEEEeCchhhchhhcccCCCCEEEEeC
Confidence 3567799999999999999999875 3699999999999999999886433 57899999987642 3456899999865
Q ss_pred chhhhcC--CCCC------hh-------hHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 124 TLDSLMC--GTNA------PI-------SASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 124 ~l~~~~~--~~~~------~~-------~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
++..... ..+. +. ....+++++.++|+|||.++++++..
T Consensus 324 Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~LkpGG~lvystcs~ 377 (429)
T 1sqg_A 324 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSV 377 (429)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESCC
T ss_pred CCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCC
Confidence 4321100 0000 11 12588999999999999999988653
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=9.9e-11 Score=97.09 Aligned_cols=80 Identities=15% Similarity=0.259 Sum_probs=69.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.++.+|||+|||+|.++..+++.+ .+|+++|+++.+++.+++++...++++++++|+.+.+ +++.+||+|+++.+++
T Consensus 48 ~~~~~~VLEIG~G~G~lT~~La~~~-~~V~aVEid~~li~~a~~~~~~~~~v~vi~gD~l~~~-~~~~~fD~Iv~NlPy~ 125 (295)
T 3gru_A 48 LTKDDVVLEIGLGKGILTEELAKNA-KKVYVIEIDKSLEPYANKLKELYNNIEIIWGDALKVD-LNKLDFNKVVANLPYQ 125 (295)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCGGGHHHHHHHHHHCSSEEEEESCTTTSC-GGGSCCSEEEEECCGG
T ss_pred CCCcCEEEEECCCchHHHHHHHhcC-CEEEEEECCHHHHHHHHHHhccCCCeEEEECchhhCC-cccCCccEEEEeCccc
Confidence 3467799999999999999999985 5999999999999999999876668999999999887 6667899999987765
Q ss_pred hh
Q 025475 127 SL 128 (252)
Q Consensus 127 ~~ 128 (252)
..
T Consensus 126 is 127 (295)
T 3gru_A 126 IS 127 (295)
T ss_dssp GH
T ss_pred cc
Confidence 43
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.21 E-value=1e-10 Score=97.48 Aligned_cols=78 Identities=23% Similarity=0.337 Sum_probs=61.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~--~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++. ..++++++++|+.+.+ + .+||+|+++.+
T Consensus 40 ~~~~~~VLDiG~G~G~lt~~La~~~-~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~~~~-~--~~~D~Vv~n~p 115 (299)
T 2h1r_A 40 IKSSDIVLEIGCGTGNLTVKLLPLA-KKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAIKTV-F--PKFDVCTANIP 115 (299)
T ss_dssp CCTTCEEEEECCTTSTTHHHHTTTS-SEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CCSSC-C--CCCSEEEEECC
T ss_pred CCCcCEEEEEcCcCcHHHHHHHhcC-CEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchhhCC-c--ccCCEEEEcCC
Confidence 3466799999999999999999885 499999999999999999874 3357999999998876 3 37999999877
Q ss_pred hhhh
Q 025475 125 LDSL 128 (252)
Q Consensus 125 l~~~ 128 (252)
++..
T Consensus 116 y~~~ 119 (299)
T 2h1r_A 116 YKIS 119 (299)
T ss_dssp GGGH
T ss_pred cccc
Confidence 6644
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.7e-11 Score=104.74 Aligned_cols=118 Identities=19% Similarity=0.268 Sum_probs=86.8
Q ss_pred cchhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC
Q 025475 35 RYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF 110 (252)
Q Consensus 35 ~~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~ 110 (252)
....+.+.+...+. ++.+|||+|||+|.++..+++. ...+++|+|+++.+++.| .+++++++|+.+..
T Consensus 23 TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-------~~~~~~~~D~~~~~- 94 (421)
T 2ih2_A 23 TPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-------PWAEGILADFLLWE- 94 (421)
T ss_dssp CCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-------TTEEEEESCGGGCC-
T ss_pred CCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-------CCCcEEeCChhhcC-
Confidence 34556666666654 4569999999999999999875 345999999999988766 36789999998875
Q ss_pred CCCCCeeEEEeccchhhhcCCC-----CChh-----------------hHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 111 FEDESFDAVIDKGTLDSLMCGT-----NAPI-----------------SASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~-----~~~~-----------------~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..++||+|+++.++....... ...+ ....++..+.++|++||.++++...
T Consensus 95 -~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~ 166 (421)
T 2ih2_A 95 -PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPA 166 (421)
T ss_dssp -CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred -ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEECh
Confidence 456899999987764321000 0011 1236789999999999999888754
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-10 Score=100.87 Aligned_cols=107 Identities=20% Similarity=0.290 Sum_probs=80.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
+.++.+|||+|||+|.++..+++.+ .+|+++|+|+.+++.|++++.. .. ++++++|+.+.. .. +||+|+++..
T Consensus 288 ~~~~~~VLDlgcG~G~~sl~la~~~-~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~--~~-~fD~Vv~dPP 362 (425)
T 2jjq_A 288 LVEGEKILDMYSGVGTFGIYLAKRG-FNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVS--VK-GFDTVIVDPP 362 (425)
T ss_dssp HCCSSEEEEETCTTTHHHHHHHHTT-CEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCC--CT-TCSEEEECCC
T ss_pred cCCCCEEEEeeccchHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcC--cc-CCCEEEEcCC
Confidence 5677899999999999999999885 4999999999999999998753 33 899999998875 22 7999999765
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
.... ...+++.+. .|+|+|.++++. .|....+.+
T Consensus 363 r~g~---------~~~~~~~l~-~l~p~givyvsc--~p~tlarDl 396 (425)
T 2jjq_A 363 RAGL---------HPRLVKRLN-REKPGVIVYVSC--NPETFARDV 396 (425)
T ss_dssp TTCS---------CHHHHHHHH-HHCCSEEEEEES--CHHHHHHHH
T ss_pred ccch---------HHHHHHHHH-hcCCCcEEEEEC--ChHHHHhHH
Confidence 3222 123444444 489999998864 344433333
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=99.15 E-value=2e-10 Score=100.90 Aligned_cols=123 Identities=13% Similarity=0.136 Sum_probs=89.5
Q ss_pred chhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHc--------------CCCcEEEEeCCHHHHHHHHHhhc--CCC-
Q 025475 36 YSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKD--------------GYEDIVNIDISSVAIDMMKMKYE--EIP- 96 (252)
Q Consensus 36 ~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~--------------~~~~v~~vD~s~~~i~~a~~~~~--~~~- 96 (252)
...+.+.+.+.+. ++.+|||+|||+|.++..+++. ...+++|+|+++.+++.|+.++. +..
T Consensus 156 P~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l~g~~~ 235 (445)
T 2okc_A 156 PRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIGT 235 (445)
T ss_dssp CHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCCS
T ss_pred cHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 3455556555533 4569999999999999888764 12479999999999999998763 222
Q ss_pred -CCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCC----------ChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 97 -QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTN----------APISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 97 -~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~----------~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
++.+.++|....+ ...+||+|+++.++........ .......++..+.++|+|||++.++.+
T Consensus 236 ~~~~i~~gD~l~~~--~~~~fD~Iv~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 236 DRSPIVCEDSLEKE--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp SCCSEEECCTTTSC--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CCCCEeeCCCCCCc--ccCCcCEEEECCCCCCcccccchhhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 6789999988765 2348999999998775411100 001124789999999999999988774
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.8e-12 Score=104.00 Aligned_cols=103 Identities=14% Similarity=0.246 Sum_probs=78.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCC-CCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE-DESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~-~~~~D~v~~~~~l~ 126 (252)
.++.+|||+|||+|.++..+++.+ .+++|+|+++.+++.++++....++++++++|+.+.+ ++ +++| .|+++.+++
T Consensus 28 ~~~~~VLDiG~G~G~~~~~l~~~~-~~v~~id~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~-~~~~~~f-~vv~n~Py~ 104 (245)
T 1yub_A 28 KETDTVYEIGTGKGHLTTKLAKIS-KQVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQ-FPNKQRY-KIVGNIPYH 104 (245)
T ss_dssp CSSEEEEECSCCCSSCSHHHHHHS-SEEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTT-CCCSSEE-EEEEECCSS
T ss_pred CCCCEEEEEeCCCCHHHHHHHHhC-CeEEEEECCHHHHHHHHHHhccCCceEEEECChhhcC-cccCCCc-EEEEeCCcc
Confidence 456699999999999999999986 5999999999999999887764457899999999887 55 3678 777775543
Q ss_pred hhcCCCCChhhHHH----------HH----HHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQ----------ML----GEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~----------~l----~~~~~~L~~gG~l~i~~ 159 (252)
.. ...... .+ +.+.++|+|||.+.+..
T Consensus 105 ~~------~~~~~~~~~~~~~~~~~lm~q~e~a~rll~~~G~l~v~~ 145 (245)
T 1yub_A 105 LS------TQIIKKVVFESRASDIYLIVEEGFYKRTLDIHRTLGLLL 145 (245)
T ss_dssp SC------HHHHHHHHHHCCCEEEEEEEESSHHHHHHCGGGSHHHHT
T ss_pred cc------HHHHHHHHhCCCCCeEEEEeeHHHHHHHhCCCCchhhhh
Confidence 21 112222 23 66889999999876643
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-09 Score=88.28 Aligned_cols=85 Identities=13% Similarity=0.238 Sum_probs=67.1
Q ss_pred hHHHHHhhC--CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCC-CC
Q 025475 39 LRPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED-ES 115 (252)
Q Consensus 39 l~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~-~~ 115 (252)
+...+...+ .++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...++++++++|+.+.+ +++ ..
T Consensus 18 ~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~-~~v~~vD~~~~~~~~a~~~~~~~~~v~~~~~D~~~~~-~~~~~~ 95 (244)
T 1qam_A 18 NIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK-FPKNQS 95 (244)
T ss_dssp HHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC-CCSSCC
T ss_pred HHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC-CeEEEEECCHHHHHHHHHhhccCCCeEEEEChHHhCC-cccCCC
Confidence 334444433 456799999999999999999987 5999999999999999999866568999999999887 553 34
Q ss_pred eeEEEeccchh
Q 025475 116 FDAVIDKGTLD 126 (252)
Q Consensus 116 ~D~v~~~~~l~ 126 (252)
| .|+++.+++
T Consensus 96 ~-~vv~nlPy~ 105 (244)
T 1qam_A 96 Y-KIFGNIPYN 105 (244)
T ss_dssp C-EEEEECCGG
T ss_pred e-EEEEeCCcc
Confidence 5 566666554
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-10 Score=92.79 Aligned_cols=77 Identities=13% Similarity=0.355 Sum_probs=65.2
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCC----CCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE----DESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~----~~~~D~v~~~ 122 (252)
..++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...++++++++|+.+++ ++ .++|| |+++
T Consensus 27 ~~~~~~VLEIG~G~G~lt~~La~~~-~~V~avEid~~~~~~~~~~~~~~~~v~~i~~D~~~~~-~~~~~~~~~~~-vv~N 103 (255)
T 3tqs_A 27 PQKTDTLVEIGPGRGALTDYLLTEC-DNLALVEIDRDLVAFLQKKYNQQKNITIYQNDALQFD-FSSVKTDKPLR-VVGN 103 (255)
T ss_dssp CCTTCEEEEECCTTTTTHHHHTTTS-SEEEEEECCHHHHHHHHHHHTTCTTEEEEESCTTTCC-GGGSCCSSCEE-EEEE
T ss_pred CCCcCEEEEEcccccHHHHHHHHhC-CEEEEEECCHHHHHHHHHHHhhCCCcEEEEcchHhCC-HHHhccCCCeE-EEec
Confidence 3567799999999999999999986 5999999999999999999876668999999999876 32 35688 7777
Q ss_pred cchh
Q 025475 123 GTLD 126 (252)
Q Consensus 123 ~~l~ 126 (252)
.+++
T Consensus 104 lPY~ 107 (255)
T 3tqs_A 104 LPYN 107 (255)
T ss_dssp CCHH
T ss_pred CCcc
Confidence 6654
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=2.1e-10 Score=94.82 Aligned_cols=102 Identities=14% Similarity=0.097 Sum_probs=71.9
Q ss_pred CCCCCcEEEEcc------cCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeE-EEccccCCCCCCCCCee
Q 025475 47 IPTSSRVLMVGC------GNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKY-LQMDVRDMSFFEDESFD 117 (252)
Q Consensus 47 ~~~~~~vLD~G~------G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~-~~~d~~~~~~~~~~~~D 117 (252)
++++.+|||+|| |+|. ..+++. + ..+|+++|+++. + +++++ +++|+.+.+ + .++||
T Consensus 61 l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~--------v---~~v~~~i~gD~~~~~-~-~~~fD 125 (290)
T 2xyq_A 61 VPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF--------V---SDADSTLIGDCATVH-T-ANKWD 125 (290)
T ss_dssp CCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC--------B---CSSSEEEESCGGGCC-C-SSCEE
T ss_pred CCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC--------C---CCCEEEEECccccCC-c-cCccc
Confidence 567889999999 4476 333333 4 358999999987 1 36889 999999876 3 36899
Q ss_pred EEEeccchhhhc----CCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 118 AVIDKGTLDSLM----CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 118 ~v~~~~~l~~~~----~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+|+++...+... ...........+++++.++|+|||.+++..+..+
T Consensus 126 ~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpGG~~v~~~~~~~ 175 (290)
T 2xyq_A 126 LIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHS 175 (290)
T ss_dssp EEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSS
T ss_pred EEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCCcEEEEEEeccC
Confidence 999975422110 0011123456899999999999999999776543
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.5e-09 Score=90.74 Aligned_cols=114 Identities=10% Similarity=0.046 Sum_probs=82.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCC--CCCeeEEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFE--DESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~--~~~~D~v~ 120 (252)
..++.+|||+|||+|..+..+++. +..+|+++|+++.+++.++++++.. .+++++++|+.++.... ..+||.|+
T Consensus 100 ~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~fD~Vl 179 (309)
T 2b9e_A 100 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 179 (309)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHhcCccccccCCCCEEE
Confidence 457789999999999999999885 3468999999999999999998643 47999999998875211 15799999
Q ss_pred eccchhhhcCCCC----------Chhh-------HHHHHHHHHHcccCCcEEEEEEcC
Q 025475 121 DKGTLDSLMCGTN----------APIS-------ASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 121 ~~~~l~~~~~~~~----------~~~~-------~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++....-...... +.++ ..++++.+.++|+ ||+|+.+++.
T Consensus 180 ~D~PcSg~G~~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~-gG~lvYsTCs 236 (309)
T 2b9e_A 180 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPS-LQRLVYSTCS 236 (309)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHTTCTT-CCEEEEEESC
T ss_pred EcCCcCCCCCCccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccC-CCEEEEECCC
Confidence 8654321100000 0011 2456788888887 9999888765
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=4.4e-10 Score=98.39 Aligned_cols=100 Identities=12% Similarity=0.224 Sum_probs=77.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCC-C--CCCCCeeEEEec
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMS-F--FEDESFDAVIDK 122 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~-~--~~~~~~D~v~~~ 122 (252)
.++.+|||+|||+|.++..++.. ..+|+|+|+|+.+++.|+++... ..+++++++|+.+.. . +.+++||+|+++
T Consensus 285 ~~~~~VLDlgcG~G~~~~~la~~-~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d 363 (433)
T 1uwv_A 285 QPEDRVLDLFCGMGNFTLPLATQ-AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363 (433)
T ss_dssp CTTCEEEEESCTTTTTHHHHHTT-SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGGTTCCSEEEEC
T ss_pred CCCCEEEECCCCCCHHHHHHHhh-CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhhhhhcCCCCEEEEC
Confidence 45679999999999999999988 45999999999999999998853 347999999998742 1 345689999997
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
....-. . .+++.+.+ ++|++.++++.
T Consensus 364 PPr~g~-------~---~~~~~l~~-~~p~~ivyvsc 389 (433)
T 1uwv_A 364 PARAGA-------A---GVMQQIIK-LEPIRIVYVSC 389 (433)
T ss_dssp CCTTCC-------H---HHHHHHHH-HCCSEEEEEES
T ss_pred CCCccH-------H---HHHHHHHh-cCCCeEEEEEC
Confidence 664433 2 34444443 68888887754
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-09 Score=94.22 Aligned_cols=112 Identities=13% Similarity=0.182 Sum_probs=87.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCC---------------------------------------CcEEEEeCCHHHHHH
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGY---------------------------------------EDIVNIDISSVAIDM 87 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~---------------------------------------~~v~~vD~s~~~i~~ 87 (252)
..++..++|.+||+|.++..++..+. .+++|+|+++.|++.
T Consensus 192 ~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~ 271 (384)
T 3ldg_A 192 WFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEI 271 (384)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHH
Confidence 35677999999999999998886531 359999999999999
Q ss_pred HHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccC--CcEEEEEEcCC
Q 025475 88 MKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP--GGIYMLITYGD 162 (252)
Q Consensus 88 a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~--gG~l~i~~~~~ 162 (252)
|+.++...+ .++++++|+.+++ . ..+||+|+++.++..- .....+...+.+.+.+.|++ ||.+++.+...
T Consensus 272 Ar~Na~~~gl~~~I~~~~~D~~~l~-~-~~~fD~Iv~NPPYG~r---l~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 346 (384)
T 3ldg_A 272 ARKNAREVGLEDVVKLKQMRLQDFK-T-NKINGVLISNPPYGER---LLDDKAVDILYNEMGETFAPLKTWSQFILTNDT 346 (384)
T ss_dssp HHHHHHHTTCTTTEEEEECCGGGCC-C-CCCSCEEEECCCCTTT---TSCHHHHHHHHHHHHHHHTTCTTSEEEEEESCT
T ss_pred HHHHHHHcCCCCceEEEECChHHCC-c-cCCcCEEEECCchhhc---cCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCH
Confidence 999985432 5899999999986 3 3589999999886532 12335677788888888876 99988888654
Q ss_pred h
Q 025475 163 P 163 (252)
Q Consensus 163 ~ 163 (252)
.
T Consensus 347 ~ 347 (384)
T 3ldg_A 347 D 347 (384)
T ss_dssp T
T ss_pred H
Confidence 4
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.9e-10 Score=96.23 Aligned_cols=113 Identities=15% Similarity=0.174 Sum_probs=84.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCC---------------------------------------CcEEEEeCCHHHHHH
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGY---------------------------------------EDIVNIDISSVAIDM 87 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~---------------------------------------~~v~~vD~s~~~i~~ 87 (252)
..++..|||++||+|.++..++..+. .+++|+|+++.|++.
T Consensus 199 ~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~ 278 (393)
T 3k0b_A 199 WHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEI 278 (393)
T ss_dssp CCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHH
T ss_pred CCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHH
Confidence 35677999999999999988887532 359999999999999
Q ss_pred HHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccC--CcEEEEEEcCC
Q 025475 88 MKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKP--GGIYMLITYGD 162 (252)
Q Consensus 88 a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~--gG~l~i~~~~~ 162 (252)
|+.++... .+++++++|+.+.+ . ..+||+|+++.++..- .........+.+.+.+.|++ ||.+++.+...
T Consensus 279 Ar~Na~~~gl~~~I~~~~~D~~~~~-~-~~~fD~Iv~NPPYg~r---l~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 353 (393)
T 3k0b_A 279 AKQNAVEAGLGDLITFRQLQVADFQ-T-EDEYGVVVANPPYGER---LEDEEAVRQLYREMGIVYKRMPTWSVYVLTSYE 353 (393)
T ss_dssp HHHHHHHTTCTTCSEEEECCGGGCC-C-CCCSCEEEECCCCCCS---HHHHHHHHHHHHHHHHHHHTCTTCEEEEEECCT
T ss_pred HHHHHHHcCCCCceEEEECChHhCC-C-CCCCCEEEECCCCccc---cCCchhHHHHHHHHHHHHhcCCCCEEEEEECCH
Confidence 99998542 25999999999986 3 4589999999875421 01124456666667677766 89888887554
Q ss_pred hh
Q 025475 163 PK 164 (252)
Q Consensus 163 ~~ 164 (252)
..
T Consensus 354 ~l 355 (393)
T 3k0b_A 354 LF 355 (393)
T ss_dssp TH
T ss_pred HH
Confidence 43
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-10 Score=92.20 Aligned_cols=92 Identities=13% Similarity=0.156 Sum_probs=72.0
Q ss_pred eeccchhhHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC
Q 025475 32 WYQRYSALRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF 110 (252)
Q Consensus 32 ~~~~~~~l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~ 110 (252)
++.....+..++... +.++ +|||+|||+|.++..+++.+ .+|+++|+++.+++.+++++.. .+++++++|+.+.+
T Consensus 29 fL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~-~~V~avEid~~~~~~l~~~~~~-~~v~vi~~D~l~~~- 104 (271)
T 3fut_A 29 FLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG-AEVTAIEKDLRLRPVLEETLSG-LPVRLVFQDALLYP- 104 (271)
T ss_dssp EECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT-CCEEEEESCGGGHHHHHHHTTT-SSEEEEESCGGGSC-
T ss_pred ccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC-CEEEEEECCHHHHHHHHHhcCC-CCEEEEECChhhCC-
Confidence 333333344444433 4567 99999999999999999997 5999999999999999999864 58999999999886
Q ss_pred CCC-CCeeEEEeccchhh
Q 025475 111 FED-ESFDAVIDKGTLDS 127 (252)
Q Consensus 111 ~~~-~~~D~v~~~~~l~~ 127 (252)
+++ ..+|.|++|.+++-
T Consensus 105 ~~~~~~~~~iv~NlPy~i 122 (271)
T 3fut_A 105 WEEVPQGSLLVANLPYHI 122 (271)
T ss_dssp GGGSCTTEEEEEEECSSC
T ss_pred hhhccCccEEEecCcccc
Confidence 443 26899999887654
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=99.07 E-value=6.4e-10 Score=95.79 Aligned_cols=111 Identities=18% Similarity=0.220 Sum_probs=85.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCC---------------------------------------CcEEEEeCCHHHHHHH
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGY---------------------------------------EDIVNIDISSVAIDMM 88 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~---------------------------------------~~v~~vD~s~~~i~~a 88 (252)
.++.+|||++||+|.++..++..+. .+|+|+|+++.+++.|
T Consensus 194 ~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~ai~~A 273 (385)
T 3ldu_A 194 KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDEESIDIA 273 (385)
T ss_dssp CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCHHHHHHH
Confidence 4667999999999999999877631 3699999999999999
Q ss_pred HHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccchhh-hcCCCCChhhHHHHHHHHHHcccC--CcEEEEEEcCC
Q 025475 89 KMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS-LMCGTNAPISASQMLGEVSRLLKP--GGIYMLITYGD 162 (252)
Q Consensus 89 ~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~-~~~~~~~~~~~~~~l~~~~~~L~~--gG~l~i~~~~~ 162 (252)
+.++... .++++.++|+.+++ ...+||+|+++.++.. + ...+....+.+++.+.|++ ||.+++.+...
T Consensus 274 r~Na~~~gl~~~i~~~~~D~~~l~--~~~~~D~Iv~NPPyg~rl----~~~~~l~~ly~~lg~~lk~~~g~~~~iit~~~ 347 (385)
T 3ldu_A 274 RENAEIAGVDEYIEFNVGDATQFK--SEDEFGFIITNPPYGERL----EDKDSVKQLYKELGYAFRKLKNWSYYLITSYE 347 (385)
T ss_dssp HHHHHHHTCGGGEEEEECCGGGCC--CSCBSCEEEECCCCCCSH----HHHHHHHHHHHHHHHHHHTSBSCEEEEEESCT
T ss_pred HHHHHHcCCCCceEEEECChhhcC--cCCCCcEEEECCCCcCcc----CCHHHHHHHHHHHHHHHhhCCCCEEEEEECCH
Confidence 9998532 26899999999986 3458999999988642 2 1124566777777777776 88888887554
Q ss_pred hh
Q 025475 163 PK 164 (252)
Q Consensus 163 ~~ 164 (252)
..
T Consensus 348 ~l 349 (385)
T 3ldu_A 348 DF 349 (385)
T ss_dssp TH
T ss_pred HH
Confidence 43
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.04 E-value=3.7e-10 Score=96.88 Aligned_cols=108 Identities=9% Similarity=0.258 Sum_probs=78.6
Q ss_pred HHHHhhCC-CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC-CCC---
Q 025475 41 PFVRKYIP-TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF-FED--- 113 (252)
Q Consensus 41 ~~~~~~~~-~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~-~~~--- 113 (252)
..+...+. .+.+|||+|||+|.++..++.. ..+|+++|+++.+++.|+++++. ..+++++++|+.+... ...
T Consensus 204 ~~~~~~~~~~~~~vLDl~cG~G~~~l~la~~-~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~ 282 (369)
T 3bt7_A 204 EWALDVTKGSKGDLLELYCGNGNFSLALARN-FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVRE 282 (369)
T ss_dssp HHHHHHTTTCCSEEEEESCTTSHHHHHHGGG-SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCC
T ss_pred HHHHHHhhcCCCEEEEccCCCCHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhccc
Confidence 33444433 3568999999999999998875 45999999999999999998854 3478999999876421 111
Q ss_pred -----------CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 114 -----------ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 114 -----------~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.+||+|+++....- +..++.+.|+++|.++.++++.
T Consensus 283 ~~~l~~~~~~~~~fD~Vv~dPPr~g-------------~~~~~~~~l~~~g~ivyvsc~p 329 (369)
T 3bt7_A 283 FNRLQGIDLKSYQCETIFVDPPRSG-------------LDSETEKMVQAYPRILYISCNP 329 (369)
T ss_dssp CTTGGGSCGGGCCEEEEEECCCTTC-------------CCHHHHHHHTTSSEEEEEESCH
T ss_pred cccccccccccCCCCEEEECcCccc-------------cHHHHHHHHhCCCEEEEEECCH
Confidence 37999998654221 2344566677889888887653
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.8e-10 Score=98.96 Aligned_cols=100 Identities=17% Similarity=0.057 Sum_probs=79.1
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-----------------CCCeEEEccccCCCC
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-----------------PQLKYLQMDVRDMSF 110 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-----------------~~v~~~~~d~~~~~~ 110 (252)
++.+|||+|||+|..+..++.. +..+|+++|+++.+++.++++++.. .+++++++|+.+...
T Consensus 47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~~ 126 (378)
T 2dul_A 47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 126 (378)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHHH
Confidence 5779999999999999999987 5558999999999999999988533 248899999877531
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...++||+|+++.. -....+++.+.+.|++||.++++.
T Consensus 127 ~~~~~fD~I~lDP~-----------~~~~~~l~~a~~~lk~gG~l~vt~ 164 (378)
T 2dul_A 127 ERHRYFHFIDLDPF-----------GSPMEFLDTALRSAKRRGILGVTA 164 (378)
T ss_dssp HSTTCEEEEEECCS-----------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred hccCCCCEEEeCCC-----------CCHHHHHHHHHHhcCCCCEEEEEe
Confidence 12357999997542 122567888899999999887764
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=1.9e-10 Score=98.91 Aligned_cols=100 Identities=21% Similarity=0.174 Sum_probs=79.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CC--CeEEEccccCCCC-CCCCCeeEEEe
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQ--LKYLQMDVRDMSF-FEDESFDAVID 121 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~--v~~~~~d~~~~~~-~~~~~~D~v~~ 121 (252)
++.+|||++||+|.++..++.. |..+|+++|+++.+++.++++++.+ .+ ++++++|+.+... ...++||+|++
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~V~l 131 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEWGFGFDYVDL 131 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCCSSCEEEEEE
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhhCCCCcEEEE
Confidence 4679999999999999999985 4468999999999999999998643 23 8999999877531 12457999998
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+. . .....++..+.++|++||.|+++.
T Consensus 132 DP-~----------g~~~~~l~~a~~~Lk~gGll~~t~ 158 (392)
T 3axs_A 132 DP-F----------GTPVPFIESVALSMKRGGILSLTA 158 (392)
T ss_dssp CC-S----------SCCHHHHHHHHHHEEEEEEEEEEE
T ss_pred CC-C----------cCHHHHHHHHHHHhCCCCEEEEEe
Confidence 76 1 112457888889999999887765
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.4e-09 Score=86.58 Aligned_cols=110 Identities=21% Similarity=0.379 Sum_probs=86.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc-------CCCCCeEEEccccCCCCCCCCCeeE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE-------EIPQLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~-------~~~~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
.+.+.+||-+|.|.|..++.+++.. ..+++.||+++.+++.+++.+. +.++++++.+|...+.....++||+
T Consensus 81 ~p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDv 160 (294)
T 3o4f_A 81 HGHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDV 160 (294)
T ss_dssp SSCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEE
T ss_pred CCCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCE
Confidence 4566799999999999999999884 5689999999999999999863 2468999999999876455678999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+...+=. . +.+..-.-..+++.+++.|+|||++++..
T Consensus 161 Ii~D~~dp-~--~~~~~L~t~eFy~~~~~~L~p~Gv~v~q~ 198 (294)
T 3o4f_A 161 IISDCTDP-I--GPGESLFTSAFYEGCKRCLNPGGIFVAQN 198 (294)
T ss_dssp EEESCCCC-C--CTTCCSSCCHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeCCCc-C--CCchhhcCHHHHHHHHHHhCCCCEEEEec
Confidence 99864311 1 11111233678999999999999999864
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=2.3e-09 Score=96.22 Aligned_cols=125 Identities=10% Similarity=-0.004 Sum_probs=88.1
Q ss_pred chhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHc----C---------------CCcEEEEeCCHHHHHHHHHhhc-
Q 025475 36 YSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKD----G---------------YEDIVNIDISSVAIDMMKMKYE- 93 (252)
Q Consensus 36 ~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~----~---------------~~~v~~vD~s~~~i~~a~~~~~- 93 (252)
...+..++...+. ++.+|+|.|||+|.++..+++. + ...++|+|+++.+++.|+.++.
T Consensus 154 P~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~l 233 (541)
T 2ar0_A 154 PRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCLL 233 (541)
T ss_dssp CHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHHH
Confidence 3445555555433 4569999999999998887754 1 1379999999999999998763
Q ss_pred -CCCC-----CeEEEccccCCCCCCCCCeeEEEeccchhhhcCC-------CCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 94 -EIPQ-----LKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCG-------TNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 94 -~~~~-----v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~-------~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+... +.+.++|....+.....+||+|+++.++...... .+.......++..+.+.|++||++.++.+
T Consensus 234 ~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~NPPf~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 234 HDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp TTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hCCCccccccCCeEeCCCcccccccccCCeEEEECCCcccccchhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 2223 7889999866431235689999999887643110 01012234789999999999999888774
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.88 E-value=5e-09 Score=84.89 Aligned_cols=75 Identities=13% Similarity=0.269 Sum_probs=60.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCC--CCeeEEEeccch
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED--ESFDAVIDKGTL 125 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~--~~~D~v~~~~~l 125 (252)
.++.+|||+|||+|.++..+++.+..+++++|+++.+++.++++ ...+++++++|+.+++ +++ +.+ .|+++.++
T Consensus 30 ~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~~~--~~~~v~~i~~D~~~~~-~~~~~~~~-~vv~NlPy 105 (249)
T 3ftd_A 30 EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLKSI--GDERLEVINEDASKFP-FCSLGKEL-KVVGNLPY 105 (249)
T ss_dssp CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHTTS--CCTTEEEECSCTTTCC-GGGSCSSE-EEEEECCT
T ss_pred CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHHhc--cCCCeEEEEcchhhCC-hhHccCCc-EEEEECch
Confidence 46679999999999999999998656999999999999999988 3458999999999876 432 233 66666655
Q ss_pred h
Q 025475 126 D 126 (252)
Q Consensus 126 ~ 126 (252)
+
T Consensus 106 ~ 106 (249)
T 3ftd_A 106 N 106 (249)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-09 Score=87.77 Aligned_cols=110 Identities=9% Similarity=-0.029 Sum_probs=75.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCH-------HHHHHHHHhhcCC---CCCeEEEccccCCC-CCCC--C
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISS-------VAIDMMKMKYEEI---PQLKYLQMDVRDMS-FFED--E 114 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~-------~~i~~a~~~~~~~---~~v~~~~~d~~~~~-~~~~--~ 114 (252)
.++.+|||+|||+|.++..++..+. +|+++|+++ .+++.++++.+.. ++++++++|+.+.. .+++ +
T Consensus 82 ~~~~~VLDlgcG~G~~a~~lA~~g~-~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~~~~l~~~~~~~~ 160 (258)
T 2r6z_A 82 TAHPTVWDATAGLGRDSFVLASLGL-TVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNAAEQMPALVKTQG 160 (258)
T ss_dssp GGCCCEEETTCTTCHHHHHHHHTTC-CEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCHHHHHHHHHHHHC
T ss_pred CCcCeEEEeeCccCHHHHHHHHhCC-EEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCHHHHHHhhhccCC
Confidence 3557999999999999999999864 899999999 9999998776321 24999999998752 1333 6
Q ss_pred CeeEEEeccchhhhcCCC-------------CChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 115 SFDAVIDKGTLDSLMCGT-------------NAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~-------------~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+||+|+++..+.+..-+. ....+...++..+.++.+. .+++...
T Consensus 161 ~fD~V~~dP~~~~~~~sa~vkk~~~~l~~l~~~~~d~~~ll~~a~~~~~~--~vvvk~p 217 (258)
T 2r6z_A 161 KPDIVYLDPMYPERRKSAAVKKEMAYFHRLVGEAQDEVVLLHTARQTAKK--RVVVKRP 217 (258)
T ss_dssp CCSEEEECCCC-------------HHHHHHHSHHHHHHHHHHHHHHHCSS--EEEEEEE
T ss_pred CccEEEECCCCCCcccchHHHHHHHHhhhhcCCCccHHHHHHHHHHhcCc--EEEEEcC
Confidence 899999988766531000 0112445666677776643 4555443
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.7e-09 Score=85.48 Aligned_cols=92 Identities=10% Similarity=0.136 Sum_probs=66.4
Q ss_pred eeccchhhHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCC---cEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC
Q 025475 32 WYQRYSALRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYE---DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD 107 (252)
Q Consensus 32 ~~~~~~~l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~---~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~ 107 (252)
+......+..++... ..++.+|||+|||+|.++..+++.+.. +++++|+++.+++.++++. .++++++++|+.+
T Consensus 24 fL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~--~~~v~~i~~D~~~ 101 (279)
T 3uzu_A 24 FLVDHGVIDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF--GELLELHAGDALT 101 (279)
T ss_dssp EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH--GGGEEEEESCGGG
T ss_pred ccCCHHHHHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc--CCCcEEEECChhc
Confidence 333333334444333 456779999999999999999988541 2999999999999999884 4579999999998
Q ss_pred CCCCCCC------CeeEEEeccchh
Q 025475 108 MSFFEDE------SFDAVIDKGTLD 126 (252)
Q Consensus 108 ~~~~~~~------~~D~v~~~~~l~ 126 (252)
++ +++- ..+.|++|..++
T Consensus 102 ~~-~~~~~~~~~~~~~~vv~NlPY~ 125 (279)
T 3uzu_A 102 FD-FGSIARPGDEPSLRIIGNLPYN 125 (279)
T ss_dssp CC-GGGGSCSSSSCCEEEEEECCHH
T ss_pred CC-hhHhcccccCCceEEEEccCcc
Confidence 76 3321 235677776654
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.8e-08 Score=78.59 Aligned_cols=112 Identities=11% Similarity=-0.026 Sum_probs=79.1
Q ss_pred eeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-----CCCeEEEcccc
Q 025475 32 WYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-----PQLKYLQMDVR 106 (252)
Q Consensus 32 ~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-----~~v~~~~~d~~ 106 (252)
|..-.+...+++...+.+..+|||+||| ..+..+++...++|+.+|.+++..+.++++++.. .+++++.+|+.
T Consensus 13 ~~~v~~~~~~~L~~~l~~a~~VLEiGtG--ySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~ 90 (202)
T 3cvo_A 13 ELTMPPAEAEALRMAYEEAEVILEYGSG--GSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIG 90 (202)
T ss_dssp CCCSCHHHHHHHHHHHHHCSEEEEESCS--HHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCS
T ss_pred CccCCHHHHHHHHHHhhCCCEEEEECch--HHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCch
Confidence 3333333445555555567799999984 6777777752469999999999999999988643 36899999965
Q ss_pred CC---------------CC-------C-CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 107 DM---------------SF-------F-EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 107 ~~---------------~~-------~-~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
+. +. . ..++||+|++..- .....+..+.+.|++||++++
T Consensus 91 ~~~~wg~p~~~~~~~~l~~~~~~i~~~~~~~~fDlIfIDg~------------k~~~~~~~~l~~l~~GG~Iv~ 152 (202)
T 3cvo_A 91 PTGDWGHPVSDAKWRSYPDYPLAVWRTEGFRHPDVVLVDGR------------FRVGCALATAFSITRPVTLLF 152 (202)
T ss_dssp SBCGGGCBSSSTTGGGTTHHHHGGGGCTTCCCCSEEEECSS------------SHHHHHHHHHHHCSSCEEEEE
T ss_pred hhhcccccccchhhhhHHHHhhhhhccccCCCCCEEEEeCC------------CchhHHHHHHHhcCCCeEEEE
Confidence 42 10 1 2368999998642 224566667799999999965
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.85 E-value=3.5e-09 Score=85.94 Aligned_cols=76 Identities=16% Similarity=0.133 Sum_probs=60.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCc--EEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCC-----CCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYED--IVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED-----ESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~--v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~D~v 119 (252)
+.++.+|||+|||+|.++. +.. + .+ ++++|+++.+++.+++++...++++++++|+.+.+ +++ +..|.|
T Consensus 19 ~~~~~~VLEIG~G~G~lt~-l~~-~-~~~~v~avEid~~~~~~a~~~~~~~~~v~~i~~D~~~~~-~~~~~~~~~~~~~v 94 (252)
T 1qyr_A 19 PQKGQAMVEIGPGLAALTE-PVG-E-RLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN-FGELAEKMGQPLRV 94 (252)
T ss_dssp CCTTCCEEEECCTTTTTHH-HHH-T-TCSCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCC-HHHHHHHHTSCEEE
T ss_pred CCCcCEEEEECCCCcHHHH-hhh-C-CCCeEEEEECCHHHHHHHHHHhccCCceEEEECchhhCC-HHHhhcccCCceEE
Confidence 4566799999999999999 654 3 36 99999999999999998765458999999998875 322 235788
Q ss_pred Eeccchh
Q 025475 120 IDKGTLD 126 (252)
Q Consensus 120 ~~~~~l~ 126 (252)
+++.+++
T Consensus 95 vsNlPY~ 101 (252)
T 1qyr_A 95 FGNLPYN 101 (252)
T ss_dssp EEECCTT
T ss_pred EECCCCC
Confidence 8877654
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-09 Score=91.61 Aligned_cols=81 Identities=9% Similarity=0.074 Sum_probs=65.8
Q ss_pred hhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC----CCCCeEEEccccCC-CCCCCCCeeEE
Q 025475 45 KYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE----IPQLKYLQMDVRDM-SFFEDESFDAV 119 (252)
Q Consensus 45 ~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~----~~~v~~~~~d~~~~-~~~~~~~~D~v 119 (252)
..+.++.+|||+|||+|..+..++..+. +|+++|+++.+++.++.++.. ..+++++++|+.+. +....++||+|
T Consensus 89 ~~l~~g~~VLDLgcG~G~~al~LA~~g~-~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~~~~~fDvV 167 (410)
T 3ll7_A 89 RFIREGTKVVDLTGGLGIDFIALMSKAS-QGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLIKTFHPDYI 167 (410)
T ss_dssp GGSCTTCEEEESSCSSSHHHHHHHTTCS-EEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHHHHHCCSEE
T ss_pred HhcCCCCEEEEeCCCchHHHHHHHhcCC-EEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhccCCCceEE
Confidence 3455578999999999999999988864 999999999999999999863 34799999999885 21123579999
Q ss_pred Eeccchh
Q 025475 120 IDKGTLD 126 (252)
Q Consensus 120 ~~~~~l~ 126 (252)
+++....
T Consensus 168 ~lDPPrr 174 (410)
T 3ll7_A 168 YVDPARR 174 (410)
T ss_dssp EECCEEC
T ss_pred EECCCCc
Confidence 9987643
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=6.6e-09 Score=94.02 Aligned_cols=98 Identities=12% Similarity=0.186 Sum_probs=68.9
Q ss_pred CcEEEEcccCcHhHHHHHHc---CC--CcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 51 SRVLMVGCGNALMSEDMVKD---GY--EDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~---~~--~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..|||+|||+|.+....+.. +. .+|++||-|+.+. .+++..+. .+.|+++++|++++. .+ +++|+||+-
T Consensus 359 ~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp~A~-~a~~~v~~N~~~dkVtVI~gd~eev~-LP-EKVDIIVSE 435 (637)
T 4gqb_A 359 QVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNPNAV-VTLENWQFEEWGSQVTVVSSDMREWV-AP-EKADIIVSE 435 (637)
T ss_dssp EEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCHHHH-HHHHHHHHHTTGGGEEEEESCTTTCC-CS-SCEEEEECC
T ss_pred cEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCHHHH-HHHHHHHhccCCCeEEEEeCcceecc-CC-cccCEEEEE
Confidence 47999999999985555544 22 2789999998554 45544432 237999999999986 44 689999985
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
..=..+ . + +....++....+.|||||.++
T Consensus 436 wMG~fL-l---~-E~mlevL~Ardr~LKPgGimi 464 (637)
T 4gqb_A 436 LLGSFA-D---N-ELSPECLDGAQHFLKDDGVSI 464 (637)
T ss_dssp CCBTTB-G---G-GCHHHHHHHHGGGEEEEEEEE
T ss_pred cCcccc-c---c-cCCHHHHHHHHHhcCCCcEEc
Confidence 542222 1 1 333467888889999999853
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.81 E-value=3.2e-08 Score=88.64 Aligned_cols=127 Identities=10% Similarity=0.063 Sum_probs=89.4
Q ss_pred cchhhHHHHHhhCC------CCCcEEEEcccCcHhHHHHHHc----CCCcEEEEeCCHHHHHHHHHhhc--CC--CCCeE
Q 025475 35 RYSALRPFVRKYIP------TSSRVLMVGCGNALMSEDMVKD----GYEDIVNIDISSVAIDMMKMKYE--EI--PQLKY 100 (252)
Q Consensus 35 ~~~~l~~~~~~~~~------~~~~vLD~G~G~G~~~~~l~~~----~~~~v~~vD~s~~~i~~a~~~~~--~~--~~v~~ 100 (252)
....+..++...+. ++.+|+|.+||+|.+...+++. +...++|+|+++.++..|+.++. +. .++.+
T Consensus 201 TP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~~~~~I 280 (542)
T 3lkd_A 201 TPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPIENQFL 280 (542)
T ss_dssp CCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCGGGEEE
T ss_pred ccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCcCccce
Confidence 34555555554432 4569999999999998888775 24589999999999999998763 22 25678
Q ss_pred EEccccCC--CCCCCCCeeEEEeccchhhhc--------------CC-CCChh-hHHHHHHHHHHccc-CCcEEEEEEcC
Q 025475 101 LQMDVRDM--SFFEDESFDAVIDKGTLDSLM--------------CG-TNAPI-SASQMLGEVSRLLK-PGGIYMLITYG 161 (252)
Q Consensus 101 ~~~d~~~~--~~~~~~~~D~v~~~~~l~~~~--------------~~-~~~~~-~~~~~l~~~~~~L~-~gG~l~i~~~~ 161 (252)
.++|.... +.....+||+|++++++..-. ++ .++.. .--.++..+.+.|+ +||++.++.+.
T Consensus 281 ~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~l~~Lk~~gGr~a~VlP~ 360 (542)
T 3lkd_A 281 HNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHGYYHLKQDNGVMAIVLPH 360 (542)
T ss_dssp EESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHHHHTBCTTTCEEEEEEET
T ss_pred EecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHHHHHhCCCceeEEEEecc
Confidence 99998765 424567899999998865210 00 00000 11258999999999 99998887754
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=2.4e-08 Score=92.26 Aligned_cols=111 Identities=9% Similarity=0.079 Sum_probs=80.2
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-------------------------------------------CCcEEEEeCCHHH
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-------------------------------------------YEDIVNIDISSVA 84 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-------------------------------------------~~~v~~vD~s~~~ 84 (252)
.++..+||.+||+|.++..++..+ ..+++|+|+++.+
T Consensus 189 ~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~a 268 (703)
T 3v97_A 189 QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARV 268 (703)
T ss_dssp CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHH
T ss_pred CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHH
Confidence 466799999999999998887642 1379999999999
Q ss_pred HHHHHHhhcCCC---CCeEEEccccCCCC-CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHH---HcccCCcEEEE
Q 025475 85 IDMMKMKYEEIP---QLKYLQMDVRDMSF-FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVS---RLLKPGGIYML 157 (252)
Q Consensus 85 i~~a~~~~~~~~---~v~~~~~d~~~~~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~---~~L~~gG~l~i 157 (252)
++.|+.++...+ .+++.++|+.++.. ...++||+|++|.++..- .........+.+.+. +.+.+||.+++
T Consensus 269 v~~A~~N~~~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~NPPYG~R---lg~~~~l~~ly~~l~~~lk~~~~g~~~~i 345 (703)
T 3v97_A 269 IQRARTNARLAGIGELITFEVKDVAQLTNPLPKGPYGTVLSNPPYGER---LDSEPALIALHSLLGRIMKNQFGGWNLSL 345 (703)
T ss_dssp HHHHHHHHHHTTCGGGEEEEECCGGGCCCSCTTCCCCEEEECCCCCC------CCHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred HHHHHHHHHHcCCCCceEEEECChhhCccccccCCCCEEEeCCCcccc---ccchhHHHHHHHHHHHHHHhhCCCCeEEE
Confidence 999999985432 48999999988741 223489999999886431 112234444554444 44457999999
Q ss_pred EEcC
Q 025475 158 ITYG 161 (252)
Q Consensus 158 ~~~~ 161 (252)
.+..
T Consensus 346 lt~~ 349 (703)
T 3v97_A 346 FSAS 349 (703)
T ss_dssp EESC
T ss_pred EeCC
Confidence 8754
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.1e-09 Score=87.08 Aligned_cols=77 Identities=17% Similarity=0.261 Sum_probs=63.5
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCC-C---CCCCeeEEEe
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF-F---EDESFDAVID 121 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~-~---~~~~~D~v~~ 121 (252)
.++.+|||+|||+|.++..+++.. ..+++++|+|+.|++.|++++... .+++++++|+.+++. + ...+||.|++
T Consensus 25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~Vl~ 104 (301)
T 1m6y_A 25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILM 104 (301)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHhcCCCCCCEEEE
Confidence 467799999999999999999874 459999999999999999998653 589999999987641 1 1257999998
Q ss_pred ccc
Q 025475 122 KGT 124 (252)
Q Consensus 122 ~~~ 124 (252)
+..
T Consensus 105 D~g 107 (301)
T 1m6y_A 105 DLG 107 (301)
T ss_dssp ECS
T ss_pred cCc
Confidence 654
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=9.3e-09 Score=83.18 Aligned_cols=119 Identities=12% Similarity=0.083 Sum_probs=74.9
Q ss_pred hHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCe
Q 025475 39 LRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 39 l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
|.++..+. ++++.+|||+|||+|.++..+++. +...++++|++.++............++.....++.... +..+++
T Consensus 63 L~ei~ek~~l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~~~~~g~~ii~~~~~~dv~~-l~~~~~ 141 (277)
T 3evf_A 63 LRWFHERGYVKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTDIHR-LEPVKC 141 (277)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCCCCBTTGGGEEEECSCCTTT-SCCCCC
T ss_pred HHHHHHhCCCCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccccCcCCCCeEEEeccceehh-cCCCCc
Confidence 44444443 567779999999999999998876 555788899874421000000000013444555553333 667789
Q ss_pred eEEEeccchhhhcCCCCChhhH--HHHHHHHHHcccCC-cEEEEEEcC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISA--SQMLGEVSRLLKPG-GIYMLITYG 161 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~--~~~l~~~~~~L~~g-G~l~i~~~~ 161 (252)
|+|++....+ . +...-+.. -.+++.+.++|+|| |.+++..+.
T Consensus 142 DlVlsD~apn-s--G~~~~D~~rs~~LL~~a~~~LkpG~G~FV~KVf~ 186 (277)
T 3evf_A 142 DTLLCDIGES-S--SSSVTEGERTVRVLDTVEKWLACGVDNFCVKVLA 186 (277)
T ss_dssp SEEEECCCCC-C--SCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESC
T ss_pred cEEEecCccC-c--CchHHHHHHHHHHHHHHHHHhCCCCCeEEEEecC
Confidence 9999987544 1 00000222 23578889999999 999998887
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.77 E-value=5.4e-09 Score=94.68 Aligned_cols=101 Identities=16% Similarity=0.176 Sum_probs=72.5
Q ss_pred CCcEEEEcccCcHhHHHHHHc----C----------CCcEEEEeCCHHHHHHHHHhhc-CC-CCCeEEEccccCCCCCC-
Q 025475 50 SSRVLMVGCGNALMSEDMVKD----G----------YEDIVNIDISSVAIDMMKMKYE-EI-PQLKYLQMDVRDMSFFE- 112 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~----~----------~~~v~~vD~s~~~i~~a~~~~~-~~-~~v~~~~~d~~~~~~~~- 112 (252)
+..|||+|||+|.++...+.. + ..+|++||-++.++..++.... +. +.|+++.+|++++. .+
T Consensus 410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~Ng~~d~VtVI~gd~eev~-lp~ 488 (745)
T 3ua3_A 410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVRTWKRRVTIIESDMRSLP-GIA 488 (745)
T ss_dssp EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHHTTTTCSEEEESCGGGHH-HHH
T ss_pred CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhcCCCCeEEEEeCchhhcc-ccc
Confidence 458999999999997543222 1 2389999999987766665543 22 36999999999986 42
Q ss_pred ----CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 113 ----DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 113 ----~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
.+++|+||+-..=... ..+....++..+.+.|||||.++
T Consensus 489 ~~~~~ekVDIIVSElmGsfl-----~nEL~pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 489 KDRGFEQPDIIVSELLGSFG-----DNELSPECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHTTCCCCSEEEECCCBTTB-----GGGSHHHHHHTTGGGSCTTCEEE
T ss_pred ccCCCCcccEEEEecccccc-----chhccHHHHHHHHHhCCCCcEEE
Confidence 5789999986542222 22445567888889999999854
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.5e-08 Score=87.79 Aligned_cols=128 Identities=13% Similarity=0.027 Sum_probs=87.6
Q ss_pred eccchhhHHHHHhhCCC-CCcEEEEcccCcHhHHHHHHc--------C--------CCcEEEEeCCHHHHHHHHHhhcC-
Q 025475 33 YQRYSALRPFVRKYIPT-SSRVLMVGCGNALMSEDMVKD--------G--------YEDIVNIDISSVAIDMMKMKYEE- 94 (252)
Q Consensus 33 ~~~~~~l~~~~~~~~~~-~~~vLD~G~G~G~~~~~l~~~--------~--------~~~v~~vD~s~~~i~~a~~~~~~- 94 (252)
+.....+.+++...+.+ ..+|+|.+||+|.+...+++. . ...++|+|+++.+++.|+.++.-
T Consensus 227 fyTP~~Vv~lmv~ll~p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~l~ 306 (544)
T 3khk_A 227 YYTPKSIVTLIVEMLEPYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMVIR 306 (544)
T ss_dssp TCCCHHHHHHHHHHHCCCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHHHT
T ss_pred EeCCHHHHHHHHHHHhcCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHHHh
Confidence 33455666666665443 239999999999988877542 0 24799999999999999987632
Q ss_pred -C-CCCeEEEccccCCCCCCCCCeeEEEeccchhhhcC-------------C--------CCCh-hhHHHHHHHHHHccc
Q 025475 95 -I-PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC-------------G--------TNAP-ISASQMLGEVSRLLK 150 (252)
Q Consensus 95 -~-~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~-------------~--------~~~~-~~~~~~l~~~~~~L~ 150 (252)
. .++.+.++|....+.....+||+|+++.++..-.. + .++. ..--.++..+.+.|+
T Consensus 307 gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~NPPf~~~~~~~~~~~~d~r~~~g~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk 386 (544)
T 3khk_A 307 GIDFNFGKKNADSFLDDQHPDLRADFVMTNPPFNMKDWWHEKLADDPRWTINTNGEKRILTPPTGNANFAWMLHMLYHLA 386 (544)
T ss_dssp TCCCBCCSSSCCTTTSCSCTTCCEEEEEECCCSSCCSCCCGGGTTCGGGEECCC--CEECCCCTTCTHHHHHHHHHHTEE
T ss_pred CCCcccceeccchhcCcccccccccEEEECCCcCCccccchhhhhhhhhhcCcccccccccCCCcchhHHHHHHHHHHhc
Confidence 1 13444778876554345678999999988763100 0 1111 111258899999999
Q ss_pred CCcEEEEEEc
Q 025475 151 PGGIYMLITY 160 (252)
Q Consensus 151 ~gG~l~i~~~ 160 (252)
+||++.++.+
T Consensus 387 ~gGr~aiVlP 396 (544)
T 3khk_A 387 PTGSMALLLA 396 (544)
T ss_dssp EEEEEEEEEE
T ss_pred cCceEEEEec
Confidence 9999888774
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=98.71 E-value=6.2e-09 Score=84.57 Aligned_cols=79 Identities=8% Similarity=-0.010 Sum_probs=60.3
Q ss_pred CCC--CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-------C---C-CCCeEEEccccCCCCCCCC
Q 025475 48 PTS--SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-------E---I-PQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 48 ~~~--~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~-------~---~-~~v~~~~~d~~~~~~~~~~ 114 (252)
.++ .+|||+|||+|..+..++..|. +|+++|+++.+...++.+++ . . .+++++++|..++.....+
T Consensus 85 ~~g~~~~VLDl~~G~G~dal~lA~~g~-~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~ 163 (258)
T 2oyr_A 85 KGDYLPDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITP 163 (258)
T ss_dssp BTTBCCCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSS
T ss_pred cCCCCCEEEEcCCcCCHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcc
Confidence 455 7999999999999999999876 89999999987655555432 1 1 3589999999875312234
Q ss_pred CeeEEEeccchhh
Q 025475 115 SFDAVIDKGTLDS 127 (252)
Q Consensus 115 ~~D~v~~~~~l~~ 127 (252)
+||+|+++..+.+
T Consensus 164 ~fDvV~lDP~y~~ 176 (258)
T 2oyr_A 164 RPQVVYLDPMFPH 176 (258)
T ss_dssp CCSEEEECCCCCC
T ss_pred cCCEEEEcCCCCC
Confidence 7999999987654
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=4.2e-08 Score=83.35 Aligned_cols=116 Identities=17% Similarity=0.158 Sum_probs=85.3
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--------CCCCeEEEccccCCCCCCCCCe
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--------IPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--------~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
...++.+|||++||.|.-+..+++.+ ...++++|+++.-++..++++.. ..++.+...|...+.....+.|
T Consensus 145 ~~~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~f 224 (359)
T 4fzv_A 145 GLQPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTY 224 (359)
T ss_dssp CCCTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCE
T ss_pred CCCCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccC
Confidence 35678899999999999999998875 34799999999988888877642 1367888888877653456789
Q ss_pred eEEEeccchhh---h-cCCCC------Chh-------hHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 117 DAVIDKGTLDS---L-MCGTN------API-------SASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 117 D~v~~~~~l~~---~-~~~~~------~~~-------~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|.|++.....- . ....+ ... ...++|..+.++|||||+|+.++++
T Consensus 225 D~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lkpGG~LVYsTCS 286 (359)
T 4fzv_A 225 DRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCS 286 (359)
T ss_dssp EEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHHHTEEEEEEEEEEESC
T ss_pred CEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Confidence 99998765331 0 00000 111 2357888999999999999998876
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-07 Score=86.73 Aligned_cols=113 Identities=12% Similarity=0.031 Sum_probs=78.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC----CCcEEEEeCCHHHHHHH--HHhhcC------CCCCeEEEccccCCCCCCCCCe
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG----YEDIVNIDISSVAIDMM--KMKYEE------IPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~----~~~v~~vD~s~~~i~~a--~~~~~~------~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
++.+|||.|||+|.++..++... ..+++|+|+++.+++.| +.+... .....+...|+.+.......+|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~~~~~kF 400 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNPEDFANV 400 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCGGGGTTE
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccccccCCC
Confidence 56799999999999999998763 24799999999999999 444322 1123566666665432345689
Q ss_pred eEEEeccchhhhcCC----------------------CCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 117 DAVIDKGTLDSLMCG----------------------TNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 117 D~v~~~~~l~~~~~~----------------------~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+|+++.++...... .........++..+.++|++||++.++.+.
T Consensus 401 DVVIgNPPYg~~~~~~~e~kd~~~r~~~g~p~~p~s~~G~~DLy~aFIe~Al~lLKpGGrLAfIlP~ 467 (878)
T 3s1s_A 401 SVVVMNPPYVSGVTDPAIKRKFAHKIIQLTGNRPQTLFGQIGVEALFLELVTELVQDGTVISAIMPK 467 (878)
T ss_dssp EEEEECCBCCSSCCCHHHHHHHHHHHHHHHSSCCSSCSSSCCHHHHHHHHHHHHSCTTCEEEEEEET
T ss_pred CEEEECCCccccccchhhhhhHHHHhhhhccccccccccccchHHHHHHHHHHhcCCCcEEEEEECh
Confidence 999999987321000 000011345788899999999999988754
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.8e-08 Score=71.89 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=70.7
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCc-HhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCC-
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNA-LMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED- 113 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G-~~~~~l~~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~- 113 (252)
..+.+.+.+...++.+|||+|||.| ..+..|++ .|. +|+++|+++.+++ +++.|+++.. ...
T Consensus 23 e~LaeYI~~~~~~~~rVlEVG~G~g~~vA~~La~~~g~-~V~atDInp~Av~-------------~v~dDiF~P~-~~~Y 87 (153)
T 2k4m_A 23 NDLAVYIIRCSGPGTRVVEVGAGRFLYVSDYIRKHSKV-DLVLTDIKPSHGG-------------IVRDDITSPR-MEIY 87 (153)
T ss_dssp HHHHHHHHHHSCSSSEEEEETCTTCCHHHHHHHHHSCC-EEEEECSSCSSTT-------------EECCCSSSCC-HHHH
T ss_pred HHHHHHHHhcCCCCCcEEEEccCCChHHHHHHHHhCCC-eEEEEECCccccc-------------eEEccCCCCc-cccc
Confidence 3567777777777789999999999 69999997 665 8999999986543 8899998854 221
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
..||+|.+.. ++..++..+.++.+. -|.-+++.....
T Consensus 88 ~~~DLIYsir----------PP~El~~~i~~lA~~--v~adliI~pL~~ 124 (153)
T 2k4m_A 88 RGAALIYSIR----------PPAEIHSSLMRVADA--VGARLIIKPLTG 124 (153)
T ss_dssp TTEEEEEEES----------CCTTTHHHHHHHHHH--HTCEEEEECBTT
T ss_pred CCcCEEEEcC----------CCHHHHHHHHHHHHH--cCCCEEEEcCCC
Confidence 4799997643 334445555555543 355777766543
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=8.4e-08 Score=81.43 Aligned_cols=112 Identities=21% Similarity=0.169 Sum_probs=81.8
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC----------CCCCeEEEccccCCCC---CCCC
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE----------IPQLKYLQMDVRDMSF---FEDE 114 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~----------~~~v~~~~~d~~~~~~---~~~~ 114 (252)
+++.+||-+|.|.|..++.+++....+++.||+++.+++.+++.+.. .++++++.+|..++.. ...+
T Consensus 204 ~~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~~ 283 (381)
T 3c6k_A 204 YTGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEGR 283 (381)
T ss_dssp CTTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHTC
T ss_pred CCCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhccC
Confidence 35579999999999999999988766899999999999999998632 1358899999876531 1345
Q ss_pred CeeEEEeccchhhhcCC---CCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSLMCG---TNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+||+|+....-.....+ .....-...+++.++++|+|||+++...
T Consensus 284 ~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~Q~ 331 (381)
T 3c6k_A 284 EFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFTQG 331 (381)
T ss_dssp CEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 79999986431110000 0011234678899999999999998754
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=98.58 E-value=3.7e-08 Score=79.81 Aligned_cols=123 Identities=13% Similarity=0.064 Sum_probs=75.1
Q ss_pred hHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCe
Q 025475 39 LRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 39 l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
|.++..+. +.++.+|||+|||+|.++..+++. +...++++|++..+...+........++.....++.... +...++
T Consensus 79 L~ei~eK~~Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~~~~~g~~ii~~~~~~dv~~-l~~~~~ 157 (282)
T 3gcz_A 79 LRWMEERGYVKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIMRTTLGWNLIRFKDKTDVFN-MEVIPG 157 (282)
T ss_dssp HHHHHHTTSCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCCCCBTTGGGEEEECSCCGGG-SCCCCC
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccccccCCCceEEeeCCcchhh-cCCCCc
Confidence 44444444 567779999999999999998865 556799999986531111100000112333332222122 456789
Q ss_pred eEEEeccchhhhcCCCCChhhH--HHHHHHHHHcccCC--cEEEEEEcC--Chhh
Q 025475 117 DAVIDKGTLDSLMCGTNAPISA--SQMLGEVSRLLKPG--GIYMLITYG--DPKA 165 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~--~~~l~~~~~~L~~g--G~l~i~~~~--~~~~ 165 (252)
|+|++....+ . +...-+.. -.+++-+.++|+|| |.+++-.+. .+..
T Consensus 158 DvVLSDmApn-s--G~~~~D~~rs~~LL~~A~~~Lk~g~~G~Fv~KvF~pyg~~~ 209 (282)
T 3gcz_A 158 DTLLCDIGES-S--PSIAVEEQRTLRVLNCAKQWLQEGNYTEFCIKVLCPYTPLI 209 (282)
T ss_dssp SEEEECCCCC-C--SCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEESCCCSHHH
T ss_pred CEEEecCccC-C--CChHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEecCCCccH
Confidence 9999987654 1 11111222 23577778999999 999999888 5543
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=8.2e-07 Score=75.88 Aligned_cols=115 Identities=16% Similarity=0.048 Sum_probs=75.7
Q ss_pred CCcEEEEcccCcHhHHHHHHc------------------CCCcEEEEeCC-----------HHHHHHHHHhhcCCCCCeE
Q 025475 50 SSRVLMVGCGNALMSEDMVKD------------------GYEDIVNIDIS-----------SVAIDMMKMKYEEIPQLKY 100 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~------------------~~~~v~~vD~s-----------~~~i~~a~~~~~~~~~v~~ 100 (252)
..+|+|+||++|.++..+... ...+|+..|+. +.+.+.+++......+.-+
T Consensus 53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~g~~~~~~f 132 (384)
T 2efj_A 53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKENGRKIGSCL 132 (384)
T ss_dssp EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHTCCCTTSEE
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhccCCCCceE
Confidence 468999999999998887664 12367788887 4444443332211112355
Q ss_pred EEccccC---CCCCCCCCeeEEEeccchhhhcCCCCC---------------------h-----------hhHHHHHHHH
Q 025475 101 LQMDVRD---MSFFEDESFDAVIDKGTLDSLMCGTNA---------------------P-----------ISASQMLGEV 145 (252)
Q Consensus 101 ~~~d~~~---~~~~~~~~~D~v~~~~~l~~~~~~~~~---------------------~-----------~~~~~~l~~~ 145 (252)
+.+.... -. ++++++|+|+++.++|++.--+.. + .|...+|+..
T Consensus 133 ~~gvpgSFy~rl-fp~~S~d~v~Ss~aLHWls~~p~~l~~~~s~~~nkg~i~i~~~sp~~v~~ay~~Qf~~D~~~FL~~R 211 (384)
T 2efj_A 133 IGAMPGSFYSRL-FPEESMHFLHSCYCLHWLSQVPSGLVTELGISVNKGCIYSSKASRPPIQKAYLDQFTKDFTTFLRIH 211 (384)
T ss_dssp EEECCSCTTSCC-SCTTCEEEEEEESCTTBCSSSCCC------CCCCTTCSSSCTTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecchhhhhcc-CCCCceEEEEecceeeecCCCchhhhccccccccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5554433 23 789999999999999997211100 0 1233447777
Q ss_pred HHcccCCcEEEEEEcCChhh
Q 025475 146 SRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 146 ~~~L~~gG~l~i~~~~~~~~ 165 (252)
++.|+|||.+++...+.+..
T Consensus 212 a~eL~pGG~mvl~~~gr~~~ 231 (384)
T 2efj_A 212 SEELISRGRMLLTFICKEDE 231 (384)
T ss_dssp HHHEEEEEEEEEEEECCCTT
T ss_pred HHHhccCCeEEEEEecCCCc
Confidence 99999999999998776553
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.8e-07 Score=78.61 Aligned_cols=114 Identities=12% Similarity=0.111 Sum_probs=74.5
Q ss_pred CCcEEEEcccCcHhHHHHHHc----------------CCCcEEEEeCCHHHHHHHHHhhcCCC--------------CCe
Q 025475 50 SSRVLMVGCGNALMSEDMVKD----------------GYEDIVNIDISSVAIDMMKMKYEEIP--------------QLK 99 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~----------------~~~~v~~vD~s~~~i~~a~~~~~~~~--------------~v~ 99 (252)
..+|+|+|||+|.++..+... ...+|..-|+........-+.+.... +-.
T Consensus 53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~ 132 (374)
T 3b5i_A 53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY 132 (374)
T ss_dssp CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence 458999999999988887321 13467888887655444433332110 112
Q ss_pred EEEccc---cCCCCCCCCCeeEEEeccchhhhcCCCCC-------------------------------hhhHHHHHHHH
Q 025475 100 YLQMDV---RDMSFFEDESFDAVIDKGTLDSLMCGTNA-------------------------------PISASQMLGEV 145 (252)
Q Consensus 100 ~~~~d~---~~~~~~~~~~~D~v~~~~~l~~~~~~~~~-------------------------------~~~~~~~l~~~ 145 (252)
++.+.. ..-. ++++++|+|+++.++|++.--+.. ..|...+|+..
T Consensus 133 f~~gvpgSFy~rl-fP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~r 211 (374)
T 3b5i_A 133 FVAGVPGSFYRRL-FPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRAR 211 (374)
T ss_dssp EEEEEESCTTSCC-SCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEecChhhhccc-CCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 333322 2223 788999999999999998211000 12667789999
Q ss_pred HHcccCCcEEEEEEcCChh
Q 025475 146 SRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 146 ~~~L~~gG~l~i~~~~~~~ 164 (252)
++.|+|||.+++...+.+.
T Consensus 212 a~eL~pGG~mvl~~~gr~~ 230 (374)
T 3b5i_A 212 AAEVKRGGAMFLVCLGRTS 230 (374)
T ss_dssp HHHEEEEEEEEEEEEECCC
T ss_pred HHHhCCCCEEEEEEecCCC
Confidence 9999999999998876543
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=4.8e-07 Score=76.48 Aligned_cols=73 Identities=10% Similarity=0.070 Sum_probs=58.3
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.+.++.+|||+||++|.++..++++|. +|++||+.+- -. .+...++|+++++|..... ....++|+|+|..+.
T Consensus 208 ~l~~G~~vlDLGAaPGGWT~~l~~rg~-~V~aVD~~~l-~~----~l~~~~~V~~~~~d~~~~~-~~~~~~D~vvsDm~~ 280 (375)
T 4auk_A 208 RLANGMWAVDLGACPGGWTYQLVKRNM-WVYSVDNGPM-AQ----SLMDTGQVTWLREDGFKFR-PTRSNISWMVCDMVE 280 (375)
T ss_dssp HSCTTCEEEEETCTTCHHHHHHHHTTC-EEEEECSSCC-CH----HHHTTTCEEEECSCTTTCC-CCSSCEEEEEECCSS
T ss_pred cCCCCCEEEEeCcCCCHHHHHHHHCCC-EEEEEEhhhc-Ch----hhccCCCeEEEeCcccccc-CCCCCcCEEEEcCCC
Confidence 367899999999999999999999975 9999998641 11 1223468999999998886 556789999997653
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-06 Score=70.08 Aligned_cols=75 Identities=15% Similarity=0.172 Sum_probs=62.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC----CCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----FEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~----~~~~~~D~v~~~ 122 (252)
+.++..++|.+||.|..+..+++. ..+++|+|.++.+++.+++ +.. ++++++++|+.++.. ...+++|.|+++
T Consensus 20 ~~~gg~~VD~T~G~GGHS~~il~~-~g~VigiD~Dp~Ai~~A~~-L~~-~rv~lv~~~f~~l~~~L~~~g~~~vDgIL~D 96 (285)
T 1wg8_A 20 VRPGGVYVDATLGGAGHARGILER-GGRVIGLDQDPEAVARAKG-LHL-PGLTVVQGNFRHLKRHLAALGVERVDGILAD 96 (285)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHT-TCEEEEEESCHHHHHHHHH-TCC-TTEEEEESCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHC-CCEEEEEeCCHHHHHHHHh-hcc-CCEEEEECCcchHHHHHHHcCCCCcCEEEeC
Confidence 356779999999999999999998 4599999999999999999 765 689999999988742 223579999975
Q ss_pred cc
Q 025475 123 GT 124 (252)
Q Consensus 123 ~~ 124 (252)
..
T Consensus 97 LG 98 (285)
T 1wg8_A 97 LG 98 (285)
T ss_dssp CS
T ss_pred Cc
Confidence 43
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=7.1e-07 Score=72.78 Aligned_cols=115 Identities=11% Similarity=0.096 Sum_probs=70.8
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.+.++.+|||+||++|.++..+++. +...++++|+...+...... ... ..++.....++.... +..+++|+|++..
T Consensus 78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~-~~~~~~~iv~~~~~~di~~-l~~~~~DlVlsD~ 155 (300)
T 3eld_A 78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH-MQTLGWNIVKFKDKSNVFT-MPTEPSDTLLCDI 155 (300)
T ss_dssp SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC-CCBTTGGGEEEECSCCTTT-SCCCCCSEEEECC
T ss_pred CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc-ccccCCceEEeecCceeee-cCCCCcCEEeecC
Confidence 3567889999999999999999986 55578999997532100000 000 012222222222122 4557899999986
Q ss_pred chhhhcCCCCChhh--HHHHHHHHHHcccCC-cEEEEEEcC--Chhh
Q 025475 124 TLDSLMCGTNAPIS--ASQMLGEVSRLLKPG-GIYMLITYG--DPKA 165 (252)
Q Consensus 124 ~l~~~~~~~~~~~~--~~~~l~~~~~~L~~g-G~l~i~~~~--~~~~ 165 (252)
.-+ . +...-+. ...+++-+.++|+|| |.+++-.+. .+..
T Consensus 156 APn-s--G~~~~D~~rs~~LL~~A~~~LkpG~G~FV~KvF~~yG~~~ 199 (300)
T 3eld_A 156 GES-S--SNPLVERDRTMKVLENFERWKHVNTENFCVKVLAPYHPDV 199 (300)
T ss_dssp CCC-C--SSHHHHHHHHHHHHHHHHHHCCTTCCEEEEEESSTTSHHH
T ss_pred cCC-C--CCHHHHHHHHHHHHHHHHHHhcCCCCcEEEEeccccCccH
Confidence 544 2 1100011 134577778999999 999999887 5543
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=98.29 E-value=8.2e-06 Score=72.99 Aligned_cols=130 Identities=12% Similarity=0.139 Sum_probs=85.8
Q ss_pred eeeccchhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHc----C----------CCcEEEEeCCHHHHHHHHHhh--
Q 025475 31 DWYQRYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKD----G----------YEDIVNIDISSVAIDMMKMKY-- 92 (252)
Q Consensus 31 ~~~~~~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~----~----------~~~v~~vD~s~~~i~~a~~~~-- 92 (252)
.-+...+.+.+++...+. ++.+|+|.+||+|.+...+.+. . ...++|+|+++.+...|+.++
T Consensus 197 GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~l 276 (530)
T 3ufb_A 197 GEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLLL 276 (530)
T ss_dssp CCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHHH
T ss_pred ceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHHh
Confidence 334455667777766653 4559999999999998877653 1 236999999999999998765
Q ss_pred cCCCCCeEEEccccCCCC---CCCCCeeEEEeccchhhhc---------CCCCChhhHHHHHHHHHHccc-------CCc
Q 025475 93 EEIPQLKYLQMDVRDMSF---FEDESFDAVIDKGTLDSLM---------CGTNAPISASQMLGEVSRLLK-------PGG 153 (252)
Q Consensus 93 ~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~~~l~~~~---------~~~~~~~~~~~~l~~~~~~L~-------~gG 153 (252)
.+.....+..+|....+. ....+||+|++++++.--. ...+....-..++..+.+.|+ +||
T Consensus 277 hg~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~NPPf~~~~~~~~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~~~~~l~~gG 356 (530)
T 3ufb_A 277 HGLEYPRIDPENSLRFPLREMGDKDRVDVILTNPPFGGEEEKGILGNFPEDMQTAETAMLFLQLIMRKLKRPGHGSDNGG 356 (530)
T ss_dssp HTCSCCEEECSCTTCSCGGGCCGGGCBSEEEECCCSSCBCCHHHHTTSCGGGCCCBHHHHHHHHHHHHBCCTTSSSSSCC
T ss_pred cCCccccccccccccCchhhhcccccceEEEecCCCCccccccccccCchhcccchhHHHHHHHHHHHhhhhhhccCCCc
Confidence 233345677788765431 2235799999999864210 000111122346777777776 699
Q ss_pred EEEEEEc
Q 025475 154 IYMLITY 160 (252)
Q Consensus 154 ~l~i~~~ 160 (252)
++.++.+
T Consensus 357 r~avVlP 363 (530)
T 3ufb_A 357 RAAVVVP 363 (530)
T ss_dssp EEEEEEE
T ss_pred eEEEEec
Confidence 9888764
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=98.27 E-value=8.6e-07 Score=75.14 Aligned_cols=115 Identities=14% Similarity=0.097 Sum_probs=80.4
Q ss_pred CCCcEEEEcccCcHhHHHHHHc------------C-----CCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccC-
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD------------G-----YEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRD- 107 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~------------~-----~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~- 107 (252)
...+|+|+||++|..+..+... + ..+|+..|+.....+.+-+.+.... +..++.+....
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~~~~~~~f~~gvpgSF 130 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSF 130 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCS
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhcccCCCEEEEecchhh
Confidence 3458999999999877665443 1 2478899998887777766664311 22444444333
Q ss_pred --CCCCCCCCeeEEEeccchhhhcCCCCC--------------------------hhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 108 --MSFFEDESFDAVIDKGTLDSLMCGTNA--------------------------PISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 108 --~~~~~~~~~D~v~~~~~l~~~~~~~~~--------------------------~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
-. ++++++|+|+++.++|++.--+.. ..|...+|+..++.|+|||.+++..
T Consensus 131 y~rl-fp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~ 209 (359)
T 1m6e_X 131 YGRL-FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTI 209 (359)
T ss_dssp SSCC-SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEE
T ss_pred hhcc-CCCCceEEEEehhhhhhcccCchhhhccCCceEecCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 33 789999999999999997221100 1356777999999999999999988
Q ss_pred cCChh
Q 025475 160 YGDPK 164 (252)
Q Consensus 160 ~~~~~ 164 (252)
.+.+.
T Consensus 210 ~gr~~ 214 (359)
T 1m6e_X 210 LGRRS 214 (359)
T ss_dssp EECSS
T ss_pred ecCCC
Confidence 76554
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=98.23 E-value=5.9e-06 Score=67.75 Aligned_cols=103 Identities=13% Similarity=0.093 Sum_probs=75.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHc----C--CCcEEEEeCCHH--------------------------HHHHHHHhhcCC-
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD----G--YEDIVNIDISSV--------------------------AIDMMKMKYEEI- 95 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~----~--~~~v~~vD~s~~--------------------------~i~~a~~~~~~~- 95 (252)
.+.+|||+|+..|..+..++.. + ..+++++|..+. .++.++++++..
T Consensus 106 ~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~g 185 (282)
T 2wk1_A 106 VPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNYD 185 (282)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHTT
T ss_pred CCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHcC
Confidence 4559999999999988887643 1 458999996421 356677776532
Q ss_pred ---CCCeEEEccccCC-CCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 96 ---PQLKYLQMDVRDM-SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 96 ---~~v~~~~~d~~~~-~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
++++++.+++.+. +..+.++||+|++..-. - +.....++.++..|+|||++++=++
T Consensus 186 l~~~~I~li~Gda~etL~~~~~~~~d~vfIDaD~--y-------~~~~~~Le~~~p~L~pGGiIv~DD~ 245 (282)
T 2wk1_A 186 LLDEQVRFLPGWFKDTLPTAPIDTLAVLRMDGDL--Y-------ESTWDTLTNLYPKVSVGGYVIVDDY 245 (282)
T ss_dssp CCSTTEEEEESCHHHHSTTCCCCCEEEEEECCCS--H-------HHHHHHHHHHGGGEEEEEEEEESSC
T ss_pred CCcCceEEEEeCHHHHHhhCCCCCEEEEEEcCCc--c-------ccHHHHHHHHHhhcCCCEEEEEcCC
Confidence 5799999999764 33445789999987542 1 3456789999999999999887554
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.5e-07 Score=72.32 Aligned_cols=104 Identities=16% Similarity=0.202 Sum_probs=68.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-------C------CCcEEEEeCCH---HHHH-----------HHHHhhcC-------
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-------G------YEDIVNIDISS---VAID-----------MMKMKYEE------- 94 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-------~------~~~v~~vD~s~---~~i~-----------~a~~~~~~------- 94 (252)
+..+|||+|+|+|..+..+++. + ..+++++|..| +.+. .++..++.
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~g 139 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPG 139 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCSE
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccccc
Confidence 3459999999999988776542 2 14899999876 4444 34444321
Q ss_pred -------C--CCCeEEEccccCC-CCCCC---CCeeEEEeccchhhhcCCCCChh-hHHHHHHHHHHcccCCcEEEE
Q 025475 95 -------I--PQLKYLQMDVRDM-SFFED---ESFDAVIDKGTLDSLMCGTNAPI-SASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 95 -------~--~~v~~~~~d~~~~-~~~~~---~~~D~v~~~~~l~~~~~~~~~~~-~~~~~l~~~~~~L~~gG~l~i 157 (252)
. .+++++.+|+.+. +.... ..||+|+....-- ..+++ -...+++.+.++|+|||+++.
T Consensus 140 ~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~fsp-----~~~p~lw~~~~l~~l~~~L~pGG~l~t 211 (257)
T 2qy6_A 140 CHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDGFAP-----AKNPDMWTQNLFNAMARLARPGGTLAT 211 (257)
T ss_dssp EEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECSSCT-----TTCGGGCCHHHHHHHHHHEEEEEEEEE
T ss_pred hhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECCCCc-----ccChhhcCHHHHHHHHHHcCCCcEEEE
Confidence 1 2577889998773 32222 2799999863111 11222 246789999999999999874
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=97.94 E-value=4.1e-05 Score=62.27 Aligned_cols=115 Identities=14% Similarity=0.147 Sum_probs=73.9
Q ss_pred hHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEc-cccCCCCCCC
Q 025475 39 LRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQM-DVRDMSFFED 113 (252)
Q Consensus 39 l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~-d~~~~~~~~~ 113 (252)
|..+..+. +.++.+|||+||++|.++..++.+ |..+|+|+|+...-.+.= ...... +.+.+.+. |+..++ +
T Consensus 83 L~ei~~~~~l~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he~P-~~~~ql~w~lV~~~~~~Dv~~l~--~- 158 (321)
T 3lkz_A 83 LRWLVERRFLEPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHEEP-QLVQSYGWNIVTMKSGVDVFYRP--S- 158 (321)
T ss_dssp HHHHHHTTSCCCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSCCC-CCCCBTTGGGEEEECSCCTTSSC--C-
T ss_pred HHHHHHhcCCCCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCccCc-chhhhcCCcceEEEeccCHhhCC--C-
Confidence 34444443 567779999999999999977776 566899999975411000 000011 13667776 777765 2
Q ss_pred CCeeEEEeccchhhhcCCCCChh-hH---HHHHHHHHHcccCC-cEEEEEEcCC
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPI-SA---SQMLGEVSRLLKPG-GIYMLITYGD 162 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~-~~---~~~l~~~~~~L~~g-G~l~i~~~~~ 162 (252)
.++|+|+|.-. + +.+++. +. -.+|+-+-+.|++| |.+++-.+.+
T Consensus 159 ~~~D~ivcDig-e----Ss~~~~ve~~Rtl~vLel~~~wL~~~~~~f~~KVl~p 207 (321)
T 3lkz_A 159 ECCDTLLCDIG-E----SSSSAEVEEHRTIRVLEMVEDWLHRGPREFCVKVLCP 207 (321)
T ss_dssp CCCSEEEECCC-C----CCSCHHHHHHHHHHHHHHHHHHHTTCCCEEEEEESCT
T ss_pred CCCCEEEEECc-c----CCCChhhhhhHHHHHHHHHHHHhccCCCcEEEEEcCC
Confidence 56999999754 2 122322 22 23566667889888 8988877766
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=1.6e-05 Score=63.46 Aligned_cols=108 Identities=13% Similarity=0.068 Sum_probs=65.6
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCC---eEEEc-cccCCCCCCCCCeeEE
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQL---KYLQM-DVRDMSFFEDESFDAV 119 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-~~v---~~~~~-d~~~~~~~~~~~~D~v 119 (252)
.++++.+|+|+||+.|.++..+++. +...+.|.++.... . .. -.... ..+ .+.++ |++++. ..++|+|
T Consensus 70 likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~-~-~~-P~~~~~~Gv~~i~~~~G~Df~~~~---~~~~DvV 143 (269)
T 2px2_A 70 FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPG-H-EE-PMLMQSYGWNIVTMKSGVDVFYKP---SEISDTL 143 (269)
T ss_dssp SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTT-S-CC-CCCCCSTTGGGEEEECSCCGGGSC---CCCCSEE
T ss_pred CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEcccc-c-cC-CCcccCCCceEEEeeccCCccCCC---CCCCCEE
Confidence 3678889999999999999999886 22233444443321 0 00 00000 233 44446 888753 4579999
Q ss_pred EeccchhhhcCCCCChhhHH--HHHHHHHHcccCCc-EEEEEEcCC
Q 025475 120 IDKGTLDSLMCGTNAPISAS--QMLGEVSRLLKPGG-IYMLITYGD 162 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~--~~l~~~~~~L~~gG-~l~i~~~~~ 162 (252)
+|...-. ++.+.-+..+ .++.-+.++|+||| .+++-.+..
T Consensus 144 LSDMAPn---SG~~~vD~~Rs~~aL~~A~~~Lk~gG~~FvvKVFqg 186 (269)
T 2px2_A 144 LCDIGES---SPSAEIEEQRTLRILEMVSDWLSRGPKEFCIKILCP 186 (269)
T ss_dssp EECCCCC---CSCHHHHHHHHHHHHHHHHHHHTTCCSEEEEEESCT
T ss_pred EeCCCCC---CCccHHHHHHHHHHHHHHHHHhhcCCcEEEEEECCC
Confidence 9975321 1111111111 25677779999999 999988884
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00015 Score=57.06 Aligned_cols=116 Identities=16% Similarity=0.158 Sum_probs=75.6
Q ss_pred hHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEc-cccCCCCCCC
Q 025475 39 LRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQM-DVRDMSFFED 113 (252)
Q Consensus 39 l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~-d~~~~~~~~~ 113 (252)
|.++..+. +.++.+|+|+||++|.++..++.+ +..+|+++|+...-.+.= ..... -+.+++.++ |++.++ .
T Consensus 67 L~ei~ek~~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~ghe~P-~~~~s~gwn~v~fk~gvDv~~~~---~ 142 (267)
T 3p8z_A 67 LQWFVERNMVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGHEEP-VPMSTYGWNIVKLMSGKDVFYLP---P 142 (267)
T ss_dssp HHHHHHTTSSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTSCCC-CCCCCTTTTSEEEECSCCGGGCC---C
T ss_pred HHHHHHhcCCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCccCc-chhhhcCcCceEEEeccceeecC---C
Confidence 34444443 567789999999999999988776 566899999975421000 00001 135889988 987765 2
Q ss_pred CCeeEEEeccchhhhcCCCCChh-hH---HHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPI-SA---SQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~-~~---~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
.++|.|+|.-. -+.+++. +. -.+|+-+-+.|++ |.+++-.+.+..
T Consensus 143 ~~~DtllcDIg-----eSs~~~~vE~~RtlrvLela~~wL~~-~~fc~KVl~py~ 191 (267)
T 3p8z_A 143 EKCDTLLCDIG-----ESSPSPTVEESRTIRVLKMVEPWLKN-NQFCIKVLNPYM 191 (267)
T ss_dssp CCCSEEEECCC-----CCCSCHHHHHHHHHHHHHHHGGGCSS-CEEEEEESCCCS
T ss_pred ccccEEEEecC-----CCCCChhhhhhHHHHHHHHHHHhccc-CCEEEEEccCCC
Confidence 56999999743 1223322 32 2356666789988 788887766554
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.83 E-value=3.5e-05 Score=63.82 Aligned_cols=54 Identities=13% Similarity=0.146 Sum_probs=45.5
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
..++.....++..|||++||+|..+..++..|. +++|+|+++.+++.+++++..
T Consensus 226 ~~~i~~~~~~~~~vlD~f~GsGt~~~~a~~~g~-~~~g~e~~~~~~~~a~~r~~~ 279 (297)
T 2zig_A 226 ERLVRMFSFVGDVVLDPFAGTGTTLIAAARWGR-RALGVELVPRYAQLAKERFAR 279 (297)
T ss_dssp HHHHHHHCCTTCEEEETTCTTTHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 334444456788999999999999999999875 899999999999999998753
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=97.76 E-value=2.3e-05 Score=63.86 Aligned_cols=122 Identities=7% Similarity=-0.033 Sum_probs=88.9
Q ss_pred hhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCC
Q 025475 38 ALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDE 114 (252)
Q Consensus 38 ~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~ 114 (252)
.+...+... . +..+||+=+|+|.++..+++.+ .+++.+|.++..++..+++++...+++++..|...... .+..
T Consensus 82 ~yf~~l~~~-n-~~~~LDlfaGSGaLgiEaLS~~-d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~~~~ 158 (283)
T 2oo3_A 82 EYISVIKQI-N-LNSTLSYYPGSPYFAINQLRSQ-DRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLPPPE 158 (283)
T ss_dssp HHHHHHHHH-S-SSSSCCEEECHHHHHHHHSCTT-SEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCSCTT
T ss_pred HHHHHHHHh-c-CCCceeEeCCcHHHHHHHcCCC-CeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcCCCC
Confidence 344445443 3 4578999999999999999965 69999999999999999999766679999999755210 2335
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHH--cccCCcEEEEEEcCChhhhhhh
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSR--LLKPGGIYMLITYGDPKARMIH 169 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~--~L~~gG~l~i~~~~~~~~~~~~ 169 (252)
+||+|++..+++.- .+..++++.+.+ .+.++|.+++..+.........
T Consensus 159 ~fdLVfiDPPYe~k-------~~~~~vl~~L~~~~~r~~~Gi~v~WYPi~~~~~~~~ 208 (283)
T 2oo3_A 159 KRGLIFIDPSYERK-------EEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKAWTEQ 208 (283)
T ss_dssp SCEEEEECCCCCST-------THHHHHHHHHHHHHHHCTTSEEEEEEEESSHHHHHH
T ss_pred CccEEEECCCCCCC-------cHHHHHHHHHHHhCccCCCeEEEEEEeccchHHHHH
Confidence 79999999887743 455666655554 4578999999876544433333
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=2.3e-05 Score=81.52 Aligned_cols=104 Identities=19% Similarity=0.197 Sum_probs=53.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C-----CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G-----YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~-----~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+..+|||+|+|+|..+..+.+. + ..+++..|+|+...+.++++++.. ++.....|..+...+...+||+|++.
T Consensus 1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~~~-di~~~~~d~~~~~~~~~~~ydlvia~ 1318 (2512)
T 2vz8_A 1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLEQL-HVTQGQWDPANPAPGSLGKADLLVCN 1318 (2512)
T ss_dssp SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHHHH-TEEEECCCSSCCCC-----CCEEEEE
T ss_pred CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhhhc-ccccccccccccccCCCCceeEEEEc
Confidence 5569999999999876655443 1 347999999988877777666431 12221123323211345679999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++|.. .+....+++++++|+|||++++.+.
T Consensus 1319 ~vl~~t-------~~~~~~l~~~~~lL~p~G~l~~~e~ 1349 (2512)
T 2vz8_A 1319 CALATL-------GDPAVAVGNMAATLKEGGFLLLHTL 1349 (2512)
T ss_dssp CC---------------------------CCEEEEEEC
T ss_pred cccccc-------ccHHHHHHHHHHhcCCCcEEEEEec
Confidence 999877 7888999999999999999988764
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00022 Score=60.21 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=50.5
Q ss_pred CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM 108 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~ 108 (252)
+..|||+|+|.|.++..+++.. ..+++++|+++.++...++.. ..++++++.+|+.++
T Consensus 59 ~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-~~~~l~ii~~D~l~~ 117 (353)
T 1i4w_A 59 ELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-EGSPLQILKRDPYDW 117 (353)
T ss_dssp TCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-TTSSCEEECSCTTCH
T ss_pred CCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-cCCCEEEEECCccch
Confidence 4689999999999999999862 458999999999999999877 456899999999664
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0013 Score=55.23 Aligned_cols=109 Identities=16% Similarity=0.216 Sum_probs=81.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-----------------------CCCeEEEc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-----------------------PQLKYLQM 103 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-----------------------~~v~~~~~ 103 (252)
.+...|+.+|||.......+... +...++-||. |+.++.-++.+... ++.+++.+
T Consensus 96 ~~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~v~~ 174 (334)
T 1rjd_A 96 NEKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAAC 174 (334)
T ss_dssp CSSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEEC
T ss_pred CCCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhhhcccccccccccccccCCCceEEEec
Confidence 35569999999999988888875 3346666776 77777776665332 46889999
Q ss_pred cccCCC-------CC-CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 104 DVRDMS-------FF-EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 104 d~~~~~-------~~-~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
|+.+.. .. ......++++-.++.++ +++...++++.+.+.. ++|.+++.+...+
T Consensus 175 DL~d~~w~~~ll~~~~d~~~Ptl~iaEgvL~YL-----~~~~~~~ll~~ia~~~-~~~~~v~~e~i~~ 236 (334)
T 1rjd_A 175 DLNDITETTRLLDVCTKREIPTIVISECLLCYM-----HNNESQLLINTIMSKF-SHGLWISYDPIGG 236 (334)
T ss_dssp CTTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-----CHHHHHHHHHHHHHHC-SSEEEEEEEECCC
T ss_pred CCCCcHHHHHHHHhcCCCCCCEEEEEcchhhCC-----CHHHHHHHHHHHHhhC-CCcEEEEEeccCC
Confidence 998742 11 22457889999999999 8899999999998877 7888877776554
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00033 Score=56.72 Aligned_cols=54 Identities=13% Similarity=0.136 Sum_probs=46.2
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
..++.....++..|||..||+|..+..+.+.|. +++|+|+++.+++.+++++..
T Consensus 203 ~~~i~~~~~~~~~vlD~f~GsGtt~~~a~~~gr-~~ig~e~~~~~~~~~~~r~~~ 256 (260)
T 1g60_A 203 ERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLNQ 256 (260)
T ss_dssp HHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHC
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHHh
Confidence 344555567888999999999999999999875 999999999999999998753
|
| >3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00018 Score=60.00 Aligned_cols=77 Identities=13% Similarity=0.122 Sum_probs=60.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC----CC-CCCeeEEE
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----FE-DESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~----~~-~~~~D~v~ 120 (252)
.++..++|..||.|..+..+++. + .++++|+|.++.+++.++ ++. ..+++++++++.++.. .. .+++|.|+
T Consensus 56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL~-~~Rv~lv~~nF~~l~~~L~~~g~~~~vDgIL 133 (347)
T 3tka_A 56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TID-DPRFSIIHGPFSALGEYVAERDLIGKIDGIL 133 (347)
T ss_dssp CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TCC-CTTEEEEESCGGGHHHHHHHTTCTTCEEEEE
T ss_pred CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hhc-CCcEEEEeCCHHHHHHHHHhcCCCCcccEEE
Confidence 57789999999999999999987 3 568999999999999995 442 3579999999988642 11 13699999
Q ss_pred eccchh
Q 025475 121 DKGTLD 126 (252)
Q Consensus 121 ~~~~l~ 126 (252)
++..+.
T Consensus 134 fDLGVS 139 (347)
T 3tka_A 134 LDLGVS 139 (347)
T ss_dssp EECSCC
T ss_pred ECCccC
Confidence 876433
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0016 Score=55.59 Aligned_cols=75 Identities=19% Similarity=0.289 Sum_probs=62.0
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--C-----CCCCeeEEEecc
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--F-----EDESFDAVIDKG 123 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~-----~~~~~D~v~~~~ 123 (252)
.+++|+.||.|.++..+.+.|...+.++|+++.+++..+.++ ++..++++|+.+... + ....+|+|+...
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~~N~---~~~~~~~~DI~~~~~~~~~~~~~~~~~~D~i~ggp 79 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHAINF---PRSLHVQEDVSLLNAEIIKGFFKNDMPIDGIIGGP 79 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHHHHC---TTSEEECCCGGGCCHHHHHHHHCSCCCCCEEEECC
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHHHhC---CCCceEecChhhcCHHHHHhhcccCCCeeEEEecC
Confidence 589999999999999999999767889999999999998886 356788999988741 1 245799999988
Q ss_pred chhhh
Q 025475 124 TLDSL 128 (252)
Q Consensus 124 ~l~~~ 128 (252)
.+..+
T Consensus 80 PCQ~f 84 (376)
T 3g7u_A 80 PCQGF 84 (376)
T ss_dssp CCCTT
T ss_pred CCCCc
Confidence 76654
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.001 Score=54.21 Aligned_cols=112 Identities=13% Similarity=0.102 Sum_probs=70.9
Q ss_pred hHHHHHh---hCCCCCcEEEEcc------cCcHhHHHHHHcC-C-CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC
Q 025475 39 LRPFVRK---YIPTSSRVLMVGC------GNALMSEDMVKDG-Y-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD 107 (252)
Q Consensus 39 l~~~~~~---~~~~~~~vLD~G~------G~G~~~~~l~~~~-~-~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~ 107 (252)
+-+.+.. .+|.+.+|||+|+ -+|... +.+.+ . +.++++|+.+-. .... .++++|...
T Consensus 96 lcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~V--Lr~~~p~g~~VVavDL~~~~---------sda~-~~IqGD~~~ 163 (344)
T 3r24_A 96 LCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTAV--LRQWLPTGTLLVDSDLNDFV---------SDAD-STLIGDCAT 163 (344)
T ss_dssp HHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHHH--HHHHSCTTCEEEEEESSCCB---------CSSS-EEEESCGGG
T ss_pred HHHHhccccEeecCCCEEEeCCCCCCCCCCCcHHH--HHHhCCCCcEEEEeeCcccc---------cCCC-eEEEccccc
Confidence 4555644 2578889999996 567632 22222 2 389999997631 1112 458999876
Q ss_pred CCCCCCCCeeEEEeccchhhhcC-CC---CChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 108 MSFFEDESFDAVIDKGTLDSLMC-GT---NAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 108 ~~~~~~~~~D~v~~~~~l~~~~~-~~---~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
.. ..++||+|++...-.-... .. +...-...++.-+.+.|+|||.+++-.+..+.
T Consensus 164 ~~--~~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVKVFQGsg 222 (344)
T 3r24_A 164 VH--TANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVKITEHSW 222 (344)
T ss_dssp EE--ESSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEEECSSSC
T ss_pred cc--cCCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEEEecCCC
Confidence 53 4578999999754221110 00 11223466677788999999999998877655
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00081 Score=56.34 Aligned_cols=74 Identities=14% Similarity=0.110 Sum_probs=59.9
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
+.+++|+.||.|.++..+...|...+.++|+++.+++..+.++.... ++|+.++....-..+|+|+....+..+
T Consensus 11 ~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~~N~~~~~-----~~Di~~~~~~~~~~~D~l~~gpPCQ~f 84 (327)
T 2c7p_A 11 GLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEKP-----EGDITQVNEKTIPDHDILCAGFPCQAF 84 (327)
T ss_dssp TCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCCC-----BSCGGGSCGGGSCCCSEEEEECCCTTT
T ss_pred CCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCCC-----cCCHHHcCHhhCCCCCEEEECCCCCCc
Confidence 45899999999999999999998789999999999999999985422 688877642112359999998887755
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00048 Score=58.13 Aligned_cols=75 Identities=20% Similarity=0.343 Sum_probs=58.5
Q ss_pred CcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCeeEEEeccchh
Q 025475 51 SRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDKGTLD 126 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~~l~ 126 (252)
.+++|+.||.|.++..+...| ...+.++|+++.+++..+.++. +..++++|+.++.. ++...+|+|+....+.
T Consensus 3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~---~~~~~~~Di~~~~~~~~~~~~~D~l~~gpPCq 79 (343)
T 1g55_A 3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP---HTQLLAKTIEGITLEEFDRLSFDMILMSPPCQ 79 (343)
T ss_dssp EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---TSCEECSCGGGCCHHHHHHHCCSEEEECCC--
T ss_pred CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc---ccccccCCHHHccHhHcCcCCcCEEEEcCCCc
Confidence 479999999999999999988 4579999999999999999974 45678899988741 1112589999998876
Q ss_pred hh
Q 025475 127 SL 128 (252)
Q Consensus 127 ~~ 128 (252)
.+
T Consensus 80 ~f 81 (343)
T 1g55_A 80 PF 81 (343)
T ss_dssp --
T ss_pred ch
Confidence 54
|
| >2uyo_A Hypothetical protein ML2640; putative methyltransferase, transferas; 1.7A {Mycobacterium leprae} SCOP: c.66.1.57 PDB: 2ckd_A 2uyq_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.011 Score=49.06 Aligned_cols=104 Identities=14% Similarity=0.194 Sum_probs=77.1
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-----CCCCeEEEccccCCCC--------CCCCCee
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDMSF--------FEDESFD 117 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-----~~~v~~~~~d~~~~~~--------~~~~~~D 117 (252)
..|+++|||-=.....+.......++-|| -|..++..++.+.. .++..++.+|+.+ .- +.....=
T Consensus 104 ~QvV~LGaGlDTra~Rl~~~~~~~v~evD-~P~vi~~k~~lL~~~~~~~~~~~~~v~~Dl~d-~~~~~l~~~g~d~~~Pt 181 (310)
T 2uyo_A 104 RQFVILASGLDSRAYRLDWPTGTTVYEID-QPKVLAYKSTTLAEHGVTPTADRREVPIDLRQ-DWPPALRSAGFDPSART 181 (310)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEE-CHHHHHHHHHHHHHTTCCCSSEEEEEECCTTS-CHHHHHHHTTCCTTSCE
T ss_pred CeEEEeCCCCCchhhhccCCCCcEEEEcC-CHHHHHHHHHHHHhcCCCCCCCeEEEecchHh-hHHHHHHhccCCCCCCE
Confidence 47999999976655544422134788899 49999988888852 3467899999987 20 1223456
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++++-.+++|+ +++....+++.+.+.+.+|+.+++-...
T Consensus 182 ~~i~Egvl~Yl-----~~~~~~~ll~~l~~~~~~gs~l~~d~~~ 220 (310)
T 2uyo_A 182 AWLAEGLLMYL-----PATAQDGLFTEIGGLSAVGSRIAVETSP 220 (310)
T ss_dssp EEEECSCGGGS-----CHHHHHHHHHHHHHTCCTTCEEEEECCC
T ss_pred EEEEechHhhC-----CHHHHHHHHHHHHHhCCCCeEEEEEecC
Confidence 78888899999 8888999999999998899888776544
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.0033 Score=52.53 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=60.7
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
++|+|+-||.|.+..-+.+.|+..+.++|+++.+++.-+.++. ..++.+|+.++....-...|+++...++..+
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~~N~~----~~~~~~DI~~i~~~~~~~~D~l~ggpPCQ~f 74 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSDEFPKCDGIIGGPPSQSW 74 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHHHHCC----SEEEESCGGGCCGGGSCCCSEEECCCCGGGT
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCcccCChhhCCHhhCCcccEEEecCCCCCc
Confidence 4799999999999999999998778899999999999888874 3678899988752222468999998877754
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0033 Score=52.59 Aligned_cols=109 Identities=10% Similarity=0.092 Sum_probs=72.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCC--CcE-EEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGY--EDI-VNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~--~~v-~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~ 123 (252)
...+++|+.||.|.+...+...|. ..+ .++|+++.+.+..+.++... ++++|+.++.. ++...+|+++...
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~~----~~~~DI~~~~~~~i~~~~~Dil~ggp 84 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKEE----VQVKNLDSISIKQIESLNCNTWFMSP 84 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCCC----CBCCCTTTCCHHHHHHTCCCEEEECC
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCCC----cccCChhhcCHHHhccCCCCEEEecC
Confidence 345899999999999999999883 456 69999999999999988532 56788887641 2223689999987
Q ss_pred chhhh--c-CCC--CChhhHHHHHHHHHH-cccC---CcEEEEEEcC
Q 025475 124 TLDSL--M-CGT--NAPISASQMLGEVSR-LLKP---GGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~--~-~~~--~~~~~~~~~l~~~~~-~L~~---gG~l~i~~~~ 161 (252)
....+ . .+. ...+.+..++.++.+ +++. .-.+++.+.-
T Consensus 85 PCQ~fs~S~ag~~~~~~d~r~~L~~~~~r~~i~~~~~~P~~~~lENV 131 (327)
T 3qv2_A 85 PCQPYNNSIMSKHKDINDPRAKSVLHLYRDILPYLINKPKHIFIENV 131 (327)
T ss_dssp CCTTCSHHHHTTTCTTTCGGGHHHHHHHHTTGGGCSSCCSEEEEEEC
T ss_pred CccCcccccCCCCCCCccccchhHHHHHHHHHHHhccCCCEEEEEch
Confidence 76643 1 111 111223355666666 5532 1356666654
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0041 Score=52.12 Aligned_cols=75 Identities=16% Similarity=0.274 Sum_probs=59.7
Q ss_pred CcEEEEcccCcHhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCeeEEEeccchh
Q 025475 51 SRVLMVGCGNALMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDKGTLD 126 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~~l~ 126 (252)
.+++|+.||.|.+...+.+.|. ..+.++|+++.+.+..+.++. ...++..|+.++.. ++...+|+++...+..
T Consensus 4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~---~~~~~~~DI~~~~~~~~~~~~~D~l~ggpPCQ 80 (333)
T 4h0n_A 4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP---ETNLLNRNIQQLTPQVIKKWNVDTILMSPPCQ 80 (333)
T ss_dssp EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT---TSCEECCCGGGCCHHHHHHTTCCEEEECCCCC
T ss_pred CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC---CCceeccccccCCHHHhccCCCCEEEecCCCc
Confidence 4799999999999999998874 568899999999999998874 44677889887741 2223699999887766
Q ss_pred hh
Q 025475 127 SL 128 (252)
Q Consensus 127 ~~ 128 (252)
.+
T Consensus 81 ~f 82 (333)
T 4h0n_A 81 PF 82 (333)
T ss_dssp CS
T ss_pred ch
Confidence 54
|
| >2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.011 Score=48.65 Aligned_cols=77 Identities=19% Similarity=0.136 Sum_probs=60.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCc--EEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CC-CCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYED--IVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FE-DESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~--v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~-~~~~D~v~~~~ 123 (252)
...+++|+-||.|.+...+.+.|... +.++|+++.+++..+.++. ...++.+|+.++.. ++ .+.+|+++...
T Consensus 15 ~~~~vidLFaG~GG~~~g~~~aG~~~~~v~a~E~d~~a~~ty~~N~~---~~~~~~~DI~~i~~~~i~~~~~~Dll~ggp 91 (295)
T 2qrv_A 15 KPIRVLSLFDGIATGLLVLKDLGIQVDRYIASEVCEDSITVGMVRHQ---GKIMYVGDVRSVTQKHIQEWGPFDLVIGGS 91 (295)
T ss_dssp CCEEEEEETCTTTHHHHHHHHTTBCEEEEEEECCCHHHHHHHHHHTT---TCEEEECCGGGCCHHHHHHTCCCSEEEECC
T ss_pred CCCEEEEeCcCccHHHHHHHHCCCccceEEEEECCHHHHHHHHHhCC---CCceeCCChHHccHHHhcccCCcCEEEecC
Confidence 44599999999999999999998544 6999999999988888763 44678899988741 11 14699999988
Q ss_pred chhhh
Q 025475 124 TLDSL 128 (252)
Q Consensus 124 ~l~~~ 128 (252)
.+..+
T Consensus 92 PCQ~f 96 (295)
T 2qrv_A 92 PCNDL 96 (295)
T ss_dssp CCGGG
T ss_pred CCccc
Confidence 77765
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0091 Score=49.79 Aligned_cols=54 Identities=7% Similarity=0.139 Sum_probs=46.5
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
..++.....++..|||.-||+|..+......|. +++|+|+++..++.+++++..
T Consensus 243 ~~~i~~~~~~~~~VlDpF~GsGtt~~aa~~~gr-~~ig~e~~~~~~~~~~~r~~~ 296 (323)
T 1boo_A 243 EFFIRMLTEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 296 (323)
T ss_dssp HHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred HHHHHHhCCCCCEEEECCCCCCHHHHHHHHcCC-CEEEEeCCHHHHHHHHHHHHh
Confidence 444555567888999999999999999998875 999999999999999999864
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.018 Score=48.80 Aligned_cols=97 Identities=15% Similarity=0.177 Sum_probs=64.6
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC----CCCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SFFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~----~~~~~~~~D~v~ 120 (252)
+.++.+||.+|+|. |..+..+++. |..+|+++|.+++.++.+++.-. -.++..+-.++ .....+.+|+|+
T Consensus 188 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi~~~~~~~~~~~~~~~~gg~D~vi 263 (371)
T 1f8f_A 188 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA----THVINSKTQDPVAAIKEITDGGVNFAL 263 (371)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHTTSCEEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----CEEecCCccCHHHHHHHhcCCCCcEEE
Confidence 56788999999875 7788787775 65579999999998888876522 12222111111 001223699998
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..-. ....++.+.++|+++|.+++...
T Consensus 264 d~~g-------------~~~~~~~~~~~l~~~G~iv~~G~ 290 (371)
T 1f8f_A 264 ESTG-------------SPEILKQGVDALGILGKIAVVGA 290 (371)
T ss_dssp ECSC-------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred ECCC-------------CHHHHHHHHHHHhcCCEEEEeCC
Confidence 5321 12457788899999999887653
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0071 Score=53.19 Aligned_cols=78 Identities=13% Similarity=0.100 Sum_probs=61.7
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC----------------CCC
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF----------------EDE 114 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~----------------~~~ 114 (252)
.+++|+.||.|.+...+...|...+.++|+++.+.+.-+.++...+...+++.|+.++... .-.
T Consensus 89 ~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~~N~~~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i~~~~~ 168 (482)
T 3me5_A 89 FRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYKANHYCDPATHHFNEDIRDITLSHQEGVSDEAAAEHIRQHIP 168 (482)
T ss_dssp EEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHHHHSCCCTTTCEEESCTHHHHCTTCTTSCHHHHHHHHHHHSC
T ss_pred ceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHHHhcccCCCcceeccchhhhhhccccccchhhHHhhhhhcCC
Confidence 4899999999999999998887679999999999999998875445667788888765310 113
Q ss_pred CeeEEEeccchhhh
Q 025475 115 SFDAVIDKGTLDSL 128 (252)
Q Consensus 115 ~~D~v~~~~~l~~~ 128 (252)
.+|+++...++..+
T Consensus 169 ~~Dvl~gGpPCQ~F 182 (482)
T 3me5_A 169 EHDVLLAGFPCQPF 182 (482)
T ss_dssp CCSEEEEECCCCCC
T ss_pred CCCEEEecCCCcch
Confidence 58999988776654
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.0041 Score=51.25 Aligned_cols=63 Identities=22% Similarity=0.269 Sum_probs=43.5
Q ss_pred CCeEEEccccCC-CCCCCCCeeEEEeccchhhhc-CCC-C-----------ChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 97 QLKYLQMDVRDM-SFFEDESFDAVIDKGTLDSLM-CGT-N-----------APISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 97 ~v~~~~~d~~~~-~~~~~~~~D~v~~~~~l~~~~-~~~-~-----------~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.++++++|..+. ..+++++||+|+++.++.... ... . .......+++++.++|+|||.+++..
T Consensus 21 ~~~i~~gD~~~~l~~l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~ 97 (297)
T 2zig_A 21 VHRLHVGDAREVLASFPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVV 97 (297)
T ss_dssp CEEEEESCHHHHHTTSCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCEEEECcHHHHHhhCCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEE
Confidence 568999998873 335678999999999875320 000 0 00123567889999999999988764
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.023 Score=46.81 Aligned_cols=104 Identities=20% Similarity=0.225 Sum_probs=61.6
Q ss_pred CcEEEEcccCcHhHHHHHH----cC-C--CcEEEEeCC------------HHHHHHHHHhhcC--CC--CCeEEEccccC
Q 025475 51 SRVLMVGCGNALMSEDMVK----DG-Y--EDIVNIDIS------------SVAIDMMKMKYEE--IP--QLKYLQMDVRD 107 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~----~~-~--~~v~~vD~s------------~~~i~~a~~~~~~--~~--~v~~~~~d~~~ 107 (252)
.+|||+|-|+|.+...... .+ . -+++.+|.. ....+........ .+ .+++..+|+.+
T Consensus 98 ~~IlE~GFGTGLNfl~t~~~~~~~~~~~~L~~iS~Ek~pl~~~~~~~~~~~~l~~~l~~~~p~~~~~~v~L~l~~GDa~~ 177 (308)
T 3vyw_A 98 IRILDVGFGLGYNLAVALKHLWEVNPKLRVEIISFEKELLKEFPILPEPYREIHEFLLERVPEYEGERLSLKVLLGDARK 177 (308)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHCTTCEEEEEEEESSCCSCCCCCCTTSHHHHHHHHHHCSEEECSSEEEEEEESCHHH
T ss_pred cEEEEeCCCccHHHHHHHHHHHHhCCCcceEEEeecHHHHHhhHhchHhHHHHHHHHHHhCccccCCcEEEEEEechHHH
Confidence 4899999999986544332 12 2 246677642 1222222222211 12 34567788765
Q ss_pred C-CCCCCCCeeEEEeccchhhhcCCC-CChhhH-HHHHHHHHHcccCCcEEEEEEcCC
Q 025475 108 M-SFFEDESFDAVIDKGTLDSLMCGT-NAPISA-SQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 108 ~-~~~~~~~~D~v~~~~~l~~~~~~~-~~~~~~-~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
. +.+....+|+++... |++ .+|+.. ..+++.++++++|||++. +++.
T Consensus 178 ~l~~l~~~~~Da~flDg------FsP~kNPeLWs~e~f~~l~~~~~pgg~la--TYta 227 (308)
T 3vyw_A 178 RIKEVENFKADAVFHDA------FSPYKNPELWTLDFLSLIKERIDEKGYWV--SYSS 227 (308)
T ss_dssp HGGGCCSCCEEEEEECC------SCTTTSGGGGSHHHHHHHHTTEEEEEEEE--ESCC
T ss_pred HHhhhcccceeEEEeCC------CCcccCcccCCHHHHHHHHHHhCCCcEEE--EEeC
Confidence 3 324455799999874 222 233332 688999999999999875 4443
|
| >2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.013 Score=50.59 Aligned_cols=60 Identities=8% Similarity=0.206 Sum_probs=47.7
Q ss_pred CCCCcEEEEcccCcHhHHHHH-Hc-C-CCcEEEEeCCHHHHHHHHHhhcC-----C-CCCeEEEccccC
Q 025475 48 PTSSRVLMVGCGNALMSEDMV-KD-G-YEDIVNIDISSVAIDMMKMKYEE-----I-PQLKYLQMDVRD 107 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~-~~-~-~~~v~~vD~s~~~i~~a~~~~~~-----~-~~v~~~~~d~~~ 107 (252)
+++..++|+||+.|..+..++ .. + ..+|+++|++|...+..+++.+. . ++++++..-+.+
T Consensus 225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~al~~ 293 (409)
T 2py6_A 225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGCGAGE 293 (409)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECSEECS
T ss_pred CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEeEEEC
Confidence 577799999999999999887 44 3 36999999999999999998754 3 466666655544
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=95.88 E-value=0.043 Score=46.07 Aligned_cols=99 Identities=18% Similarity=0.222 Sum_probs=65.6
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----C-CCCCCeeE
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----F-FEDESFDA 118 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~~~D~ 118 (252)
.+.++.+||-+|+|. |..+..+++. |..+|+++|.+++-++.+++.-. ..++..+-.++. . .....+|+
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~v~~~t~g~g~D~ 238 (352)
T 3fpc_A 163 NIKLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGA----TDIINYKNGDIVEQILKATDGKGVDK 238 (352)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTC----CEEECGGGSCHHHHHHHHTTTCCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC----ceEEcCCCcCHHHHHHHHcCCCCCCE
Confidence 356788999999875 7888888876 55589999999998888877532 122221111110 0 12336999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+..-.- ...+..+.++|+++|.+++....
T Consensus 239 v~d~~g~-------------~~~~~~~~~~l~~~G~~v~~G~~ 268 (352)
T 3fpc_A 239 VVIAGGD-------------VHTFAQAVKMIKPGSDIGNVNYL 268 (352)
T ss_dssp EEECSSC-------------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred EEECCCC-------------hHHHHHHHHHHhcCCEEEEeccc
Confidence 9963211 13577788899999999876543
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.016 Score=48.19 Aligned_cols=54 Identities=15% Similarity=0.165 Sum_probs=45.1
Q ss_pred HHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCH---HHHHHHHHhhcC
Q 025475 40 RPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISS---VAIDMMKMKYEE 94 (252)
Q Consensus 40 ~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~---~~i~~a~~~~~~ 94 (252)
..++.....++..|||.-||+|..+......|. +++|+|+++ ..++.+++++..
T Consensus 233 ~~~i~~~~~~~~~vlDpF~GsGtt~~aa~~~~r-~~ig~e~~~~~~~~~~~~~~Rl~~ 289 (319)
T 1eg2_A 233 ERLVRALSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTFLQD 289 (319)
T ss_dssp HHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHHC--
T ss_pred HHHHHHhCCCCCEEEecCCCCCHHHHHHHHcCC-cEEEEECCccHHHHHHHHHHHHHH
Confidence 445555567888999999999999999998875 899999999 999999998754
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.048 Score=46.19 Aligned_cols=98 Identities=17% Similarity=0.222 Sum_probs=65.1
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc---cc----cCCCCCCCCCe
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM---DV----RDMSFFEDESF 116 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~---d~----~~~~~~~~~~~ 116 (252)
.+.++.+||-.|+|. |..+..+++. |..+|+++|.++.-.+.+++.-.. .++.. |. .+......+.+
T Consensus 179 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~----~vi~~~~~~~~~~i~~~~~~~~gg~ 254 (370)
T 4ej6_A 179 GIKAGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGAT----ATVDPSAGDVVEAIAGPVGLVPGGV 254 (370)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCS----EEECTTSSCHHHHHHSTTSSSTTCE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCC----EEECCCCcCHHHHHHhhhhccCCCC
Confidence 467888999999874 7777777776 555899999999988888775221 22211 11 11000223479
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+|+..-. -...++.+.++|++||.+++...
T Consensus 255 Dvvid~~G-------------~~~~~~~~~~~l~~~G~vv~~G~ 285 (370)
T 4ej6_A 255 DVVIECAG-------------VAETVKQSTRLAKAGGTVVILGV 285 (370)
T ss_dssp EEEEECSC-------------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred CEEEECCC-------------CHHHHHHHHHHhccCCEEEEEec
Confidence 99996321 12457778889999999887653
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.036 Score=46.65 Aligned_cols=98 Identities=17% Similarity=0.182 Sum_probs=63.9
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc---ccC----CCCCCCCCe
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRD----MSFFEDESF 116 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d---~~~----~~~~~~~~~ 116 (252)
.+.++.+||-+|+|. |..+..+++. |..+|+++|.++.-.+.+++.-. -.++..+ ..+ ........+
T Consensus 168 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi~~~~~~~~~~~~~i~~~~~~g~ 243 (356)
T 1pl8_A 168 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGA----DLVLQISKESPQEIARKVEGQLGCKP 243 (356)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----SEEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC----CEEEcCcccccchHHHHHHHHhCCCC
Confidence 367788999999874 7788787775 55589999999998888875422 1222211 011 100111469
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+|+..-. -...+..+.++|+++|.+++...
T Consensus 244 D~vid~~g-------------~~~~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 244 EVTIECTG-------------AEASIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp SEEEECSC-------------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred CEEEECCC-------------ChHHHHHHHHHhcCCCEEEEEec
Confidence 99985321 12346777889999999887653
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=95.62 E-value=0.092 Score=44.86 Aligned_cols=109 Identities=11% Similarity=0.142 Sum_probs=65.3
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC-C----CC-CCCCee
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-S----FF-EDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~-~----~~-~~~~~D 117 (252)
.+.++.+||.+|+|. |..+..+++. |..+|+++|.+++.++.+++. + ...+..+-.+. . .. ....+|
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l----G-a~~i~~~~~~~~~~~~~~~~~g~g~D 256 (398)
T 2dph_A 182 GVKPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDA----G-FETIDLRNSAPLRDQIDQILGKPEVD 256 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTT----T-CEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc----C-CcEEcCCCcchHHHHHHHHhCCCCCC
Confidence 356788999999975 8888888775 655899999999988888753 2 13222111111 0 01 122699
Q ss_pred EEEeccchhhhcCCC-CChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGT-NAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~-~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+..-.-....... .........++.+.++|+++|++++..
T Consensus 257 vvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 257 CGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp EEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCS
T ss_pred EEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEec
Confidence 998643211000000 000012345788889999999987654
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.54 E-value=0.12 Score=44.17 Aligned_cols=109 Identities=12% Similarity=0.188 Sum_probs=66.4
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-CC----CC-CCCCee
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MS----FF-EDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-~~----~~-~~~~~D 117 (252)
.+.++.+||-+|+|. |..+..+++. |..+|+++|.+++-++.+++.- ...+...-.+ +. .. ....+|
T Consensus 182 ~~~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lG-----a~~i~~~~~~~~~~~v~~~t~g~g~D 256 (398)
T 1kol_A 182 GVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQG-----FEIADLSLDTPLHEQIAALLGEPEVD 256 (398)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT-----CEEEETTSSSCHHHHHHHHHSSSCEE
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcC-----CcEEccCCcchHHHHHHHHhCCCCCC
Confidence 466788999999875 8888888876 5557999999999888887642 1222211111 00 01 123699
Q ss_pred EEEeccchhhhcCC--CCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCG--TNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~--~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+..-.-...... .....+....++.+.++|+++|.+++..
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G 300 (398)
T 1kol_A 257 CAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPG 300 (398)
T ss_dssp EEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECS
T ss_pred EEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEec
Confidence 99975332100000 0000223446788889999999987754
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.065 Score=44.86 Aligned_cols=94 Identities=14% Similarity=0.142 Sum_probs=64.4
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.+.++.+||-+|+|. |..+..+++. |. +|+++|.+++-.+.+++.- .-.++ .+...+ .. .+|+|+..-
T Consensus 173 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lG----a~~v~-~~~~~~---~~-~~D~vid~~ 242 (348)
T 3two_A 173 KVTKGTKVGVAGFGGLGSMAVKYAVAMGA-EVSVFARNEHKKQDALSMG----VKHFY-TDPKQC---KE-ELDFIISTI 242 (348)
T ss_dssp TCCTTCEEEEESCSHHHHHHHHHHHHTTC-EEEEECSSSTTHHHHHHTT----CSEEE-SSGGGC---CS-CEEEEEECC
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHhcC----CCeec-CCHHHH---hc-CCCEEEECC
Confidence 467888999999974 7788887776 55 8999999998888887642 22333 332222 22 799999642
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
.-. ..+..+.++|+++|.+++.....
T Consensus 243 g~~-------------~~~~~~~~~l~~~G~iv~~G~~~ 268 (348)
T 3two_A 243 PTH-------------YDLKDYLKLLTYNGDLALVGLPP 268 (348)
T ss_dssp CSC-------------CCHHHHHTTEEEEEEEEECCCCC
T ss_pred CcH-------------HHHHHHHHHHhcCCEEEEECCCC
Confidence 211 13667778999999998865433
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=95.41 E-value=0.11 Score=43.66 Aligned_cols=100 Identities=16% Similarity=0.132 Sum_probs=65.6
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE-----ccccC-CCC-CCCCCe
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ-----MDVRD-MSF-FEDESF 116 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~-----~d~~~-~~~-~~~~~~ 116 (252)
.+.++.+||-.|+|. |..+..+++. |...|+++|.+++-.+.+++. .. ..+.+.. .++.+ ... .....+
T Consensus 176 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l-~~-~~~~~~~~~~~~~~~~~~v~~~t~g~g~ 253 (363)
T 3m6i_A 176 GVRLGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEI-CP-EVVTHKVERLSAEESAKKIVESFGGIEP 253 (363)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHH-CT-TCEEEECCSCCHHHHHHHHHHHTSSCCC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-ch-hcccccccccchHHHHHHHHHHhCCCCC
Confidence 467888999999874 7788888776 564599999999999999876 32 1112211 11111 000 123469
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+|+..-. -...+..+.++|+++|.+++...
T Consensus 254 Dvvid~~g-------------~~~~~~~~~~~l~~~G~iv~~G~ 284 (363)
T 3m6i_A 254 AVALECTG-------------VESSIAAAIWAVKFGGKVFVIGV 284 (363)
T ss_dssp SEEEECSC-------------CHHHHHHHHHHSCTTCEEEECCC
T ss_pred CEEEECCC-------------ChHHHHHHHHHhcCCCEEEEEcc
Confidence 99996321 12356778889999999988654
|
| >3tos_A CALS11; methyltransferase, calicheamicin, structural genomic protein structure initiative, PSI, natPro; HET: MSE SAH GLU; 1.55A {Micromonospora echinospora} PDB: 4gf5_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.23 Score=39.83 Aligned_cols=106 Identities=11% Similarity=0.060 Sum_probs=70.9
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-------C-CCcEEEEe-----CCH----------------------HHHHHH---
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-------G-YEDIVNID-----ISS----------------------VAIDMM--- 88 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-------~-~~~v~~vD-----~s~----------------------~~i~~a--- 88 (252)
..-+..|+|+|+-.|..+..++.. + ..+++++| ..+ +.++..
T Consensus 67 ~~vpG~ivE~GV~rG~S~~~~a~~~~~l~~~~~~r~v~~fDTFeG~P~~~~~D~~~~~~~~G~~~~~~~~~~~l~~~l~~ 146 (257)
T 3tos_A 67 LDVPGVIMEFGVRFGRHLGTFAALRGVYEPYNPLRRIVGFDTFTGFPDVNDVDRVGPTAYQGRFAVPGGYPAYLKEVLDA 146 (257)
T ss_dssp TTSCSEEEEECCTTCHHHHHHHHHHHHHCTTCTTCCEEEEECSSCCCSCCGGGTTSTTCSTTTTCCCTTHHHHHHHHHHH
T ss_pred hCCCCeEEEEecccCHHHHHHHHHHHHhcccCCCCEEEEEECCCCCCCCccccccccccccCcccccchhHHHHHHHHHH
Confidence 344558999999999877776542 2 46899999 221 112211
Q ss_pred HHhh---cC-CCCCeEEEccccCCC-C----CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 89 KMKY---EE-IPQLKYLQMDVRDMS-F----FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 89 ~~~~---~~-~~~v~~~~~d~~~~~-~----~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.++. .. ..+++++.+++.+.. . .+..++|+|.+..-. - +.....++.+...|+|||++++=+
T Consensus 147 ~~~~~~~g~~~~~i~li~G~~~dTL~~~l~~~~~~~~dlv~ID~D~--Y-------~~t~~~le~~~p~l~~GGvIv~DD 217 (257)
T 3tos_A 147 HECSDFFGHVTQRSVLVEGDVRETVPRYLAENPQTVIALAYFDLDL--Y-------EPTKAVLEAIRPYLTKGSIVAFDE 217 (257)
T ss_dssp HHTTSTTTTSCCSEEEEESCHHHHHHHHHHHCTTCCEEEEEECCCC--H-------HHHHHHHHHHGGGEEEEEEEEESS
T ss_pred HhhhhhcCCCCCcEEEEEecHHHHHHHHHHhCCCCceEEEEEcCcc--c-------chHHHHHHHHHHHhCCCcEEEEcC
Confidence 1121 11 147999999987642 1 234579999987642 2 455678889999999999999877
Q ss_pred cC
Q 025475 160 YG 161 (252)
Q Consensus 160 ~~ 161 (252)
+.
T Consensus 218 ~~ 219 (257)
T 3tos_A 218 LD 219 (257)
T ss_dssp TT
T ss_pred CC
Confidence 64
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.05 E-value=0.19 Score=42.99 Aligned_cols=102 Identities=12% Similarity=0.112 Sum_probs=62.0
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----C-CCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----F-FEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~~~D~v 119 (252)
+.++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++.-. -.++..+-.++. . .....+|+|
T Consensus 211 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~i~~~t~g~g~D~v 286 (404)
T 3ip1_A 211 IRPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGA----DHVIDPTKENFVEAVLDYTNGLGAKLF 286 (404)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTC----SEEECTTTSCHHHHHHHHTTTCCCSEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC----CEEEcCCCCCHHHHHHHHhCCCCCCEE
Confidence 56788999999864 7777777776 55589999999998888876532 122221111110 0 123369999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+..-.-. ......+++.+.+.++++|.+++...
T Consensus 287 id~~g~~--------~~~~~~~~~~l~~~~~~~G~iv~~G~ 319 (404)
T 3ip1_A 287 LEATGVP--------QLVWPQIEEVIWRARGINATVAIVAR 319 (404)
T ss_dssp EECSSCH--------HHHHHHHHHHHHHCSCCCCEEEECSC
T ss_pred EECCCCc--------HHHHHHHHHHHHhccCCCcEEEEeCC
Confidence 9642211 01223333334455699999988654
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.00 E-value=0.052 Score=46.04 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=63.8
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc--ccCCC----CCCCCCeeE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD--VRDMS----FFEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d--~~~~~----~~~~~~~D~ 118 (252)
+.++.+||-+|+|. |..+..+++. |..+|+++|.+++-++.+++.-. -.++... -.++. ....+.+|+
T Consensus 191 ~~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi~~~~~~~~~~~~i~~~~~gg~D~ 266 (378)
T 3uko_A 191 VEPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGV----NEFVNPKDHDKPIQEVIVDLTDGGVDY 266 (378)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTC----CEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC----cEEEccccCchhHHHHHHHhcCCCCCE
Confidence 56788999999974 7777777776 66589999999988888775421 1222211 01110 012347999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
|+..-. -...++.+.++|++| |.+++...
T Consensus 267 vid~~g-------------~~~~~~~~~~~l~~g~G~iv~~G~ 296 (378)
T 3uko_A 267 SFECIG-------------NVSVMRAALECCHKGWGTSVIVGV 296 (378)
T ss_dssp EEECSC-------------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred EEECCC-------------CHHHHHHHHHHhhccCCEEEEEcc
Confidence 996321 134577888999997 99887654
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.023 Score=47.34 Aligned_cols=64 Identities=17% Similarity=0.107 Sum_probs=44.6
Q ss_pred CCeEEEccccC-CCCCCCCCeeEEEeccchhhhc---CCCC----ChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 97 QLKYLQMDVRD-MSFFEDESFDAVIDKGTLDSLM---CGTN----APISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 97 ~v~~~~~d~~~-~~~~~~~~~D~v~~~~~l~~~~---~~~~----~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
...++++|..+ +..++++++|+|+++.++.... .+.. -.......+.+++++|++||.+++..-
T Consensus 14 ~~~ii~gD~~~~l~~l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~ 85 (323)
T 1boo_A 14 NGSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFG 85 (323)
T ss_dssp SEEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred CceEEeCcHHHHHhhCCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEEC
Confidence 56788999865 3325678999999998864320 0000 013567889999999999999988653
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.79 E-value=0.1 Score=44.15 Aligned_cols=96 Identities=21% Similarity=0.248 Sum_probs=61.6
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-CCCCCCCCeeEEEec
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVIDK 122 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~~D~v~~~ 122 (252)
.+.++.+||-+|+|. |..+..+++. |. +|+++|.+++-++.+++.-. ..++...-.+ ..... ..+|+|+..
T Consensus 191 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga-~Vi~~~~~~~~~~~a~~lGa----~~vi~~~~~~~~~~~~-~g~Dvvid~ 264 (369)
T 1uuf_A 191 QAGPGKKVGVVGIGGLGHMGIKLAHAMGA-HVVAFTTSEAKREAAKALGA----DEVVNSRNADEMAAHL-KSFDFILNT 264 (369)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTC----SEEEETTCHHHHHTTT-TCEEEEEEC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC----cEEeccccHHHHHHhh-cCCCEEEEC
Confidence 466788999999974 7777777775 55 79999999988888876421 1222211001 01012 469999864
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
-.-. ..++.+.++|+++|.+++...
T Consensus 265 ~g~~-------------~~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 265 VAAP-------------HNLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp CSSC-------------CCHHHHHTTEEEEEEEEECCC
T ss_pred CCCH-------------HHHHHHHHHhccCCEEEEecc
Confidence 2211 135667789999999887543
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.094 Score=43.70 Aligned_cols=97 Identities=12% Similarity=0.203 Sum_probs=64.0
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-C--CCCCeeEEE
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-F--EDESFDAVI 120 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-~--~~~~~D~v~ 120 (252)
.+.++.+||-.|+|. |..+..+++. |. +|+++|.+++-.+.+++.-. -.++...-.+... . ..+.+|+|+
T Consensus 163 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa----~~~i~~~~~~~~~~~~~~~g~~d~vi 237 (340)
T 3s2e_A 163 DTRPGQWVVISGIGGLGHVAVQYARAMGL-RVAAVDIDDAKLNLARRLGA----EVAVNARDTDPAAWLQKEIGGAHGVL 237 (340)
T ss_dssp TCCTTSEEEEECCSTTHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHHSSEEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHcCC----CEEEeCCCcCHHHHHHHhCCCCCEEE
Confidence 356788999999974 8888888876 55 99999999998888876422 1222211111100 0 113689988
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.... -...++.+.++|+++|.+++...
T Consensus 238 d~~g-------------~~~~~~~~~~~l~~~G~iv~~G~ 264 (340)
T 3s2e_A 238 VTAV-------------SPKAFSQAIGMVRRGGTIALNGL 264 (340)
T ss_dssp ESSC-------------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred EeCC-------------CHHHHHHHHHHhccCCEEEEeCC
Confidence 5321 13357778889999999887643
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.53 E-value=0.16 Score=43.13 Aligned_cols=97 Identities=21% Similarity=0.236 Sum_probs=62.4
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc---ccC----CCCC-CCCCe
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRD----MSFF-EDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d---~~~----~~~~-~~~~~ 116 (252)
+.++.+||-.|+| .|..+..+++. |..+|++++.+++-++.+++.- .-.++..+ -.+ .... ....+
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lG----a~~vi~~~~~~~~~~~~~v~~~~~g~g~ 268 (380)
T 1vj0_A 193 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIG----ADLTLNRRETSVEERRKAIMDITHGRGA 268 (380)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTT----CSEEEETTTSCHHHHHHHHHHHTTTSCE
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcC----CcEEEeccccCcchHHHHHHHHhCCCCC
Confidence 5677899999976 47777777776 5359999999999888887542 11233221 011 1001 22369
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+|+..-.- ...++.+.++|+++|.+++...
T Consensus 269 Dvvid~~g~-------------~~~~~~~~~~l~~~G~iv~~G~ 299 (380)
T 1vj0_A 269 DFILEATGD-------------SRALLEGSELLRRGGFYSVAGV 299 (380)
T ss_dssp EEEEECSSC-------------TTHHHHHHHHEEEEEEEEECCC
T ss_pred cEEEECCCC-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 999964221 1246677889999999887653
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.18 Score=42.41 Aligned_cols=95 Identities=19% Similarity=0.220 Sum_probs=62.9
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-----CCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-----FEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~D~v 119 (252)
+.++.+||-+|+|. |..+..+++. |. +++++|.+++-++.+++.-. -.++..+..++.+ .....+|+|
T Consensus 187 ~~~g~~VlV~G~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~v~~~~~g~g~D~v 261 (363)
T 3uog_A 187 LRAGDRVVVQGTGGVALFGLQIAKATGA-EVIVTSSSREKLDRAFALGA----DHGINRLEEDWVERVYALTGDRGADHI 261 (363)
T ss_dssp CCTTCEEEEESSBHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHHTTCCEEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEecCchhHHHHHHcCC----CEEEcCCcccHHHHHHHHhCCCCceEE
Confidence 56788999999874 7777777776 55 89999999998888876522 1233211111100 123369999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+..-. ...+..+.++|+++|.+++...
T Consensus 262 id~~g--------------~~~~~~~~~~l~~~G~iv~~G~ 288 (363)
T 3uog_A 262 LEIAG--------------GAGLGQSLKAVAPDGRISVIGV 288 (363)
T ss_dssp EEETT--------------SSCHHHHHHHEEEEEEEEEECC
T ss_pred EECCC--------------hHHHHHHHHHhhcCCEEEEEec
Confidence 86422 1236667788999999988754
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.36 Score=40.08 Aligned_cols=99 Identities=15% Similarity=0.156 Sum_probs=63.2
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-----CCCCCeeE
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-----FEDESFDA 118 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~D~ 118 (252)
...++.+||-.|+|. |.++..+++. |...++++|.+++-++.+++.- ....+.-+-.+..+ -....+|+
T Consensus 157 ~~~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~~lG----a~~~i~~~~~~~~~~~~~~~~~~g~d~ 232 (346)
T 4a2c_A 157 QGCENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAKSFG----AMQTFNSSEMSAPQMQSVLRELRFNQL 232 (346)
T ss_dssp TCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTT----CSEEEETTTSCHHHHHHHHGGGCSSEE
T ss_pred ccCCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHHHcC----CeEEEeCCCCCHHHHHHhhcccCCccc
Confidence 356788999999974 6666666665 6667899999999888887652 22333221111110 12245788
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+..-. -...++.+.++|+++|.+++....
T Consensus 233 v~d~~G-------------~~~~~~~~~~~l~~~G~~v~~g~~ 262 (346)
T 4a2c_A 233 ILETAG-------------VPQTVELAVEIAGPHAQLALVGTL 262 (346)
T ss_dssp EEECSC-------------SHHHHHHHHHHCCTTCEEEECCCC
T ss_pred cccccc-------------ccchhhhhhheecCCeEEEEEecc
Confidence 875321 134567778899999998876543
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.1 Score=43.54 Aligned_cols=97 Identities=9% Similarity=0.179 Sum_probs=65.2
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----CC-CCCCeeE
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FF-EDESFDA 118 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~~-~~~~~D~ 118 (252)
.+.++.+||-.|+|. |..+..+++. |..+|+++|.+++-.+.+++.-. ..++..+- +.. .. ....+|+
T Consensus 168 ~~~~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa----~~~i~~~~-~~~~~v~~~t~g~g~d~ 242 (345)
T 3jv7_A 168 LLGPGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGA----DAAVKSGA-GAADAIRELTGGQGATA 242 (345)
T ss_dssp GCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTC----SEEEECST-THHHHHHHHHGGGCEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCC----CEEEcCCC-cHHHHHHHHhCCCCCeE
Confidence 467888999999974 7888888775 45699999999998888876522 12222111 110 01 1236999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+..-. -...++.+.++|+++|.+++...
T Consensus 243 v~d~~G-------------~~~~~~~~~~~l~~~G~iv~~G~ 271 (345)
T 3jv7_A 243 VFDFVG-------------AQSTIDTAQQVVAVDGHISVVGI 271 (345)
T ss_dssp EEESSC-------------CHHHHHHHHHHEEEEEEEEECSC
T ss_pred EEECCC-------------CHHHHHHHHHHHhcCCEEEEECC
Confidence 996321 12367788899999999887653
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.17 Score=42.71 Aligned_cols=98 Identities=10% Similarity=0.077 Sum_probs=63.3
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccc--cCCC----CCCCCCee
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV--RDMS----FFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~--~~~~----~~~~~~~D 117 (252)
.+.++.+||-+|+|. |..+..+++. |..+|+++|.+++-.+.+++.-. -.++..+- .++. ....+.+|
T Consensus 188 ~~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi~~~~~~~~~~~~i~~~t~gg~D 263 (373)
T 1p0f_A 188 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGA----TECLNPKDYDKPIYEVICEKTNGGVD 263 (373)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC----cEEEecccccchHHHHHHHHhCCCCC
Confidence 356788999999874 7777777775 65589999999988888875421 12222110 0110 01223799
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
+|+..-. -...+..+.++|+++ |.+++...
T Consensus 264 vvid~~g-------------~~~~~~~~~~~l~~~~G~iv~~G~ 294 (373)
T 1p0f_A 264 YAVECAG-------------RIETMMNALQSTYCGSGVTVVLGL 294 (373)
T ss_dssp EEEECSC-------------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEECCC-------------CHHHHHHHHHHHhcCCCEEEEEcc
Confidence 9995321 124577888999999 99887553
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.19 Score=42.28 Aligned_cols=93 Identities=13% Similarity=0.223 Sum_probs=61.9
Q ss_pred CCCcEEEEc-cc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc--ccc-CCCCCCCCCeeEEEec
Q 025475 49 TSSRVLMVG-CG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM--DVR-DMSFFEDESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G-~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~--d~~-~~~~~~~~~~D~v~~~ 122 (252)
++.+||-.| +| .|..+..+++. +..+|+++|.+++-++.+++.-. -.++.. +.. .......+.+|+|+..
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa----d~vi~~~~~~~~~v~~~~~~g~Dvvid~ 246 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA----HHVIDHSKPLAAEVAALGLGAPAFVFST 246 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC----SEEECTTSCHHHHHHTTCSCCEEEEEEC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC----CEEEeCCCCHHHHHHHhcCCCceEEEEC
Confidence 566899998 55 58899999886 55599999999988888876421 122211 110 0111233579999853
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
- .-...++.+.++|+++|.+++.
T Consensus 247 ~-------------g~~~~~~~~~~~l~~~G~iv~~ 269 (363)
T 4dvj_A 247 T-------------HTDKHAAEIADLIAPQGRFCLI 269 (363)
T ss_dssp S-------------CHHHHHHHHHHHSCTTCEEEEC
T ss_pred C-------------CchhhHHHHHHHhcCCCEEEEE
Confidence 2 2234577888999999999876
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=93.98 E-value=0.2 Score=42.19 Aligned_cols=97 Identities=14% Similarity=0.150 Sum_probs=62.7
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccc--cCCC----CCCCCCeeE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV--RDMS----FFEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~--~~~~----~~~~~~~D~ 118 (252)
+.++.+||-+|+|. |..+..+++. |..+|+++|.+++-.+.+++.-. -.++...- .++. ....+.+|+
T Consensus 188 ~~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~~~v~~~~~~g~D~ 263 (373)
T 2fzw_A 188 LEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA----TECINPQDFSKPIQEVLIEMTDGGVDY 263 (373)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC----SEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC----ceEeccccccccHHHHHHHHhCCCCCE
Confidence 56788999999874 7777777765 65589999999988888875421 12221110 0110 011236999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
|+..-. -...++.+.++|+++ |.+++...
T Consensus 264 vid~~g-------------~~~~~~~~~~~l~~~~G~iv~~G~ 293 (373)
T 2fzw_A 264 SFECIG-------------NVKVMRAALEACHKGWGVSVVVGV 293 (373)
T ss_dssp EEECSC-------------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred EEECCC-------------cHHHHHHHHHhhccCCcEEEEEec
Confidence 985321 123577888999999 99887553
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.38 Score=40.15 Aligned_cols=97 Identities=20% Similarity=0.203 Sum_probs=62.5
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccc-cCCC-C----CC---CC
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV-RDMS-F----FE---DE 114 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~-~~~~-~----~~---~~ 114 (252)
.+.++.+||-.|+|. |..+..+++. |. +|+++|.+++-.+.+++.-. -.++..+- .+.. . .. ..
T Consensus 165 ~~~~g~~VlV~GaG~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa----~~~~~~~~~~~~~~~i~~~~~~~~g~ 239 (352)
T 1e3j_A 165 GVQLGTTVLVIGAGPIGLVSVLAAKAYGA-FVVCTARSPRRLEVAKNCGA----DVTLVVDPAKEEESSIIERIRSAIGD 239 (352)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTC----SEEEECCTTTSCHHHHHHHHHHHSSS
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEcCCHHHHHHHHHhCC----CEEEcCcccccHHHHHHHHhccccCC
Confidence 366788999999874 7777777765 55 69999999998888875421 12222110 1110 0 01 24
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+|+|+..-. -...++.+.++|+++|.+++...
T Consensus 240 g~D~vid~~g-------------~~~~~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 240 LPNVTIDCSG-------------NEKCITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp CCSEEEECSC-------------CHHHHHHHHHHSCTTCEEEECSC
T ss_pred CCCEEEECCC-------------CHHHHHHHHHHHhcCCEEEEEec
Confidence 6999985421 12346777889999999887653
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=93.89 E-value=0.2 Score=38.09 Aligned_cols=93 Identities=18% Similarity=0.245 Sum_probs=59.1
Q ss_pred hCCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------C-CCCCC
Q 025475 46 YIPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------F-FEDES 115 (252)
Q Consensus 46 ~~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~-~~~~~ 115 (252)
.+.++.+||..|+ |.|..+..++.. |. +|+++|.+++..+.+++. +.... .|..+.. . .....
T Consensus 35 ~~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~----g~~~~--~d~~~~~~~~~~~~~~~~~~ 107 (198)
T 1pqw_A 35 RLSPGERVLIHSATGGVGMAAVSIAKMIGA-RIYTTAGSDAKREMLSRL----GVEYV--GDSRSVDFADEILELTDGYG 107 (198)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHTT----CCSEE--EETTCSTHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEeeCCChHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHc----CCCEE--eeCCcHHHHHHHHHHhCCCC
Confidence 3567889999995 456666655554 65 899999999877766542 11111 2332211 0 12246
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+|+.+.. ...++.+.+.|+++|++++..
T Consensus 108 ~D~vi~~~g--------------~~~~~~~~~~l~~~G~~v~~g 137 (198)
T 1pqw_A 108 VDVVLNSLA--------------GEAIQRGVQILAPGGRFIELG 137 (198)
T ss_dssp EEEEEECCC--------------THHHHHHHHTEEEEEEEEECS
T ss_pred CeEEEECCc--------------hHHHHHHHHHhccCCEEEEEc
Confidence 999995421 135677889999999988754
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.82 E-value=0.37 Score=38.98 Aligned_cols=107 Identities=13% Similarity=0.144 Sum_probs=70.9
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
++++|--|++.|. .+..|++.|. +|+.+|.+++.++.+.+.+. .++..+++|+.+.... .-++.|
T Consensus 29 gKvalVTGas~GIG~aiA~~la~~Ga-~V~i~~r~~~~l~~~~~~~g--~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 105 (273)
T 4fgs_A 29 AKIAVITGATSGIGLAAAKRFVAEGA-RVFITGRRKDVLDAAIAEIG--GGAVGIQADSANLAELDRLYEKVKAEAGRID 105 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC--TTCEEEECCTTCHHHHHHHHHHHHHHHSCEE
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC--CCeEEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5688888987764 6667777786 89999999988877666553 3678889999875311 125789
Q ss_pred EEEeccchhhh-cCCCCChhhHHHH-----------HHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSL-MCGTNAPISASQM-----------LGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~-~~~~~~~~~~~~~-----------l~~~~~~L~~gG~l~i~~ 159 (252)
+++.+...... .+..-++++..+. .+.+...|+.+|.++.+.
T Consensus 106 iLVNNAG~~~~~~~~~~~~e~w~~~~~vNl~g~~~~~~~~~p~m~~~G~IInis 159 (273)
T 4fgs_A 106 VLFVNAGGGSMLPLGEVTEEQYDDTFDRNVKGVLFTVQKALPLLARGSSVVLTG 159 (273)
T ss_dssp EEEECCCCCCCCCTTSCCHHHHHHHHHHHTHHHHHHHHHHTTTEEEEEEEEEEC
T ss_pred EEEECCCCCCCCChhhccHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 99987654332 1222344444333 355567777888766644
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=93.78 E-value=0.27 Score=40.99 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=60.8
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----CC-CCCCeeEEEe
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FF-EDESFDAVID 121 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~~-~~~~~D~v~~ 121 (252)
++.+||-+|+|. |..+..+++. |..+|+++|.+++-++.+++.-. ..++..+-.++. .. ....+|+|+.
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga----~~~~~~~~~~~~~~v~~~~~g~g~D~vid 242 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA----DYVINPFEEDVVKEVMDITDGNGVDVFLE 242 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC----SEEECTTTSCHHHHHHHHTTTSCEEEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC----CEEECCCCcCHHHHHHHHcCCCCCCEEEE
Confidence 778999999963 7777777765 55489999999988888875421 122211111110 01 1236999996
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.-. ....++.+.++|+++|.++....
T Consensus 243 ~~g-------------~~~~~~~~~~~l~~~G~iv~~g~ 268 (348)
T 2d8a_A 243 FSG-------------APKALEQGLQAVTPAGRVSLLGL 268 (348)
T ss_dssp CSC-------------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred CCC-------------CHHHHHHHHHHHhcCCEEEEEcc
Confidence 422 12356777889999999887553
|
| >1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52 | Back alignment and structure |
|---|
Probab=93.76 E-value=0.25 Score=42.11 Aligned_cols=45 Identities=16% Similarity=0.230 Sum_probs=34.4
Q ss_pred CCcEEEEcccCcHhHHHHHHc--------CCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 50 SSRVLMVGCGNALMSEDMVKD--------GYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~--------~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
+.+|+|+|+|.|.++..+++. ...+++.||+|+...+.=++.+..
T Consensus 81 ~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~~ 133 (387)
T 1zkd_A 81 TLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAG 133 (387)
T ss_dssp SEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTT
T ss_pred CcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhcC
Confidence 347999999999998888753 133899999999887765555543
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=93.74 E-value=0.22 Score=42.09 Aligned_cols=97 Identities=12% Similarity=0.124 Sum_probs=62.2
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccc--cCCC----CCCCCCeeE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV--RDMS----FFEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~--~~~~----~~~~~~~D~ 118 (252)
+.++.+||-+|+|. |..+..+++. |..+|+++|.+++-++.+++.-. -.++..+- .++. ....+.+|+
T Consensus 189 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~~~~~~~~~~g~D~ 264 (374)
T 2jhf_A 189 VTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA----TECVNPQDYKKPIQEVLTEMSNGGVDF 264 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHHHTTSCBSE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC----ceEecccccchhHHHHHHHHhCCCCcE
Confidence 56788999999874 7777777765 55479999999988888865421 12221110 0110 012236999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
|+..-. -...+..+.++|+++ |.+++...
T Consensus 265 vid~~g-------------~~~~~~~~~~~l~~~~G~iv~~G~ 294 (374)
T 2jhf_A 265 SFEVIG-------------RLDTMVTALSCCQEAYGVSVIVGV 294 (374)
T ss_dssp EEECSC-------------CHHHHHHHHHHBCTTTCEEEECSC
T ss_pred EEECCC-------------CHHHHHHHHHHhhcCCcEEEEecc
Confidence 985321 123567788899999 99887543
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.74 E-value=0.17 Score=42.67 Aligned_cols=95 Identities=15% Similarity=0.249 Sum_probs=62.4
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC----CC----CCCCCCe
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD----MS----FFEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~----~~----~~~~~~~ 116 (252)
+.++.+||-+|+|. |..+..+++. |..+|+++|.+++-++.+++.-. -.++ |..+ +. ....+.+
T Consensus 190 ~~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa----~~vi--~~~~~~~~~~~~~~~~~~~g~ 263 (374)
T 1cdo_A 190 VEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA----TDFV--NPNDHSEPISQVLSKMTNGGV 263 (374)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----CEEE--CGGGCSSCHHHHHHHHHTSCB
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC----ceEE--eccccchhHHHHHHHHhCCCC
Confidence 56778999999864 7777777775 55479999999988888875421 1222 2221 10 0112369
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
|+|+..-. ....++.+.++|+++ |.+++...
T Consensus 264 D~vid~~g-------------~~~~~~~~~~~l~~~~G~iv~~G~ 295 (374)
T 1cdo_A 264 DFSLECVG-------------NVGVMRNALESCLKGWGVSVLVGW 295 (374)
T ss_dssp SEEEECSC-------------CHHHHHHHHHTBCTTTCEEEECSC
T ss_pred CEEEECCC-------------CHHHHHHHHHHhhcCCcEEEEEcC
Confidence 99985321 123577888999999 99887653
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.12 Score=43.62 Aligned_cols=95 Identities=20% Similarity=0.188 Sum_probs=62.5
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC----CC----CCCCCCe
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD----MS----FFEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~----~~----~~~~~~~ 116 (252)
+.++.+||-+|+|. |..+..+++. |..+|+++|.+++-.+.+++.-. -.++ |..+ +. ....+.+
T Consensus 193 ~~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi--~~~~~~~~~~~~v~~~~~~g~ 266 (376)
T 1e3i_A 193 VTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA----TDCL--NPRELDKPVQDVITELTAGGV 266 (376)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----SEEE--CGGGCSSCHHHHHHHHHTSCB
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC----cEEE--ccccccchHHHHHHHHhCCCc
Confidence 56788999999874 7777777776 55589999999988888865421 1222 2211 10 0112369
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
|+|+..-. -...++.+.++|+++ |.+++...
T Consensus 267 Dvvid~~G-------------~~~~~~~~~~~l~~~~G~iv~~G~ 298 (376)
T 1e3i_A 267 DYSLDCAG-------------TAQTLKAAVDCTVLGWGSCTVVGA 298 (376)
T ss_dssp SEEEESSC-------------CHHHHHHHHHTBCTTTCEEEECCC
T ss_pred cEEEECCC-------------CHHHHHHHHHHhhcCCCEEEEECC
Confidence 99985321 124577888999999 99887553
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.45 Score=38.66 Aligned_cols=110 Identities=15% Similarity=0.146 Sum_probs=67.2
Q ss_pred CCCcEEEEcccC----c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCC
Q 025475 49 TSSRVLMVGCGN----A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~----G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~ 114 (252)
.++++|-.|++. | .++..+++.|. +|+.++.++...+.+++.....+++.++.+|+.+.... .-+
T Consensus 30 ~gk~~lVTGasg~~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 108 (293)
T 3grk_A 30 QGKRGLILGVANNRSIAWGIAKAAREAGA-ELAFTYQGDALKKRVEPLAEELGAFVAGHCDVADAASIDAVFETLEKKWG 108 (293)
T ss_dssp TTCEEEEECCCSSSSHHHHHHHHHHHTTC-EEEEEECSHHHHHHHHHHHHHHTCEEEEECCTTCHHHHHHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCceEEECCCCCHHHHHHHHHHHHHhcC
Confidence 356889999763 3 36666777776 89999999765555554443334678899999875311 124
Q ss_pred CeeEEEeccchhhh-----cCCCCChhhH-----------HHHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSL-----MCGTNAPISA-----------SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~-----~~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|++|.+..+... .....+.++. ..+++.+...++++|.++.+.
T Consensus 109 ~iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~Iv~is 169 (293)
T 3grk_A 109 KLDFLVHAIGFSDKDELTGRYIDTSEANFTNTMLISVYSLTAVSRRAEKLMADGGSILTLT 169 (293)
T ss_dssp CCSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCCEEEECCccCCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEEe
Confidence 78999987653320 0001122332 234455667777788877655
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.77 Score=32.70 Aligned_cols=93 Identities=14% Similarity=0.164 Sum_probs=57.8
Q ss_pred CcEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEeccch
Q 025475 51 SRVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDKGTL 125 (252)
Q Consensus 51 ~~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~~~l 125 (252)
.+|+-+|+|. |. ++..+.+.|. +++++|.+++.++.++.. .+.++.+|..+... ..-..+|+|++...
T Consensus 8 ~~viIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~~~~~-----g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~- 80 (140)
T 3fwz_A 8 NHALLVGYGRVGSLLGEKLLASDI-PLVVIETSRTRVDELRER-----GVRAVLGNAANEEIMQLAHLECAKWLILTIP- 80 (140)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-----TCEEEESCTTSHHHHHHTTGGGCSEEEECCS-
T ss_pred CCEEEECcCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHc-----CCCEEECCCCCHHHHHhcCcccCCEEEEECC-
Confidence 4799999974 54 3444445565 899999999988877652 46788888876431 12246898886422
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++.. ...+-...+.+.|+..++...
T Consensus 81 --------~~~~-n~~~~~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 81 --------NGYE-AGEIVASARAKNPDIEIIARA 105 (140)
T ss_dssp --------CHHH-HHHHHHHHHHHCSSSEEEEEE
T ss_pred --------ChHH-HHHHHHHHHHHCCCCeEEEEE
Confidence 1121 122223445567777766544
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=93.08 E-value=0.37 Score=40.38 Aligned_cols=93 Identities=22% Similarity=0.330 Sum_probs=60.9
Q ss_pred CCCC------CcEEEEccc-CcHhH-HHHH-Hc-CCCcEEEEeCCHH---HHHHHHHhhcCCCCCeEEEccccCCC----
Q 025475 47 IPTS------SRVLMVGCG-NALMS-EDMV-KD-GYEDIVNIDISSV---AIDMMKMKYEEIPQLKYLQMDVRDMS---- 109 (252)
Q Consensus 47 ~~~~------~~vLD~G~G-~G~~~-~~l~-~~-~~~~v~~vD~s~~---~i~~a~~~~~~~~~v~~~~~d~~~~~---- 109 (252)
+.++ .+||-+|+| .|..+ ..++ +. |..+|+++|.+++ -.+.+++.- ...+ |..+..
T Consensus 164 ~~~g~~~~~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lG-----a~~v--~~~~~~~~~i 236 (357)
T 2b5w_A 164 ASRSAFDWDPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELD-----ATYV--DSRQTPVEDV 236 (357)
T ss_dssp HTTTTSCCCCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTT-----CEEE--ETTTSCGGGH
T ss_pred CCCCcccCCCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcC-----Cccc--CCCccCHHHH
Confidence 4567 899999986 37777 7887 55 5534999999887 777776532 1222 322211
Q ss_pred -CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 110 -FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 110 -~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.. .+.+|+|+..-. -...++.+.++|+++|.++....
T Consensus 237 ~~~-~gg~Dvvid~~g-------------~~~~~~~~~~~l~~~G~iv~~g~ 274 (357)
T 2b5w_A 237 PDV-YEQMDFIYEATG-------------FPKHAIQSVQALAPNGVGALLGV 274 (357)
T ss_dssp HHH-SCCEEEEEECSC-------------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred HHh-CCCCCEEEECCC-------------ChHHHHHHHHHHhcCCEEEEEeC
Confidence 01 236999985321 12356778889999999887653
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.07 E-value=0.55 Score=39.01 Aligned_cols=93 Identities=14% Similarity=0.113 Sum_probs=61.6
Q ss_pred hCCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------C-CCCCC
Q 025475 46 YIPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------F-FEDES 115 (252)
Q Consensus 46 ~~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~-~~~~~ 115 (252)
.+.++.+||-.|+ |.|..+..++.. |. ++++++.+++.++.+++.-. ..+ .|..+.. . .....
T Consensus 163 ~~~~g~~vlV~Gasg~iG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~ga----~~~--~d~~~~~~~~~~~~~~~~~~ 235 (343)
T 2eih_A 163 GVRPGDDVLVMAAGSGVSVAAIQIAKLFGA-RVIATAGSEDKLRRAKALGA----DET--VNYTHPDWPKEVRRLTGGKG 235 (343)
T ss_dssp CCCTTCEEEECSTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTC----SEE--EETTSTTHHHHHHHHTTTTC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcCC----CEE--EcCCcccHHHHHHHHhCCCC
Confidence 3567789999998 568877777765 55 89999999998888865311 122 2322211 0 11246
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+|+.... . ..++.+.++|+++|.+++..
T Consensus 236 ~d~vi~~~g-~-------------~~~~~~~~~l~~~G~~v~~g 265 (343)
T 2eih_A 236 ADKVVDHTG-A-------------LYFEGVIKATANGGRIAIAG 265 (343)
T ss_dssp EEEEEESSC-S-------------SSHHHHHHHEEEEEEEEESS
T ss_pred ceEEEECCC-H-------------HHHHHHHHhhccCCEEEEEe
Confidence 999996432 1 23667778899999987754
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.66 Score=36.83 Aligned_cols=109 Identities=9% Similarity=0.083 Sum_probs=66.5
Q ss_pred CCcEEEEccc--C--cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCC---------C
Q 025475 50 SSRVLMVGCG--N--AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFE---------D 113 (252)
Q Consensus 50 ~~~vLD~G~G--~--G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~---------~ 113 (252)
+.++|-.|++ . |. ++..+++.|. +|++++.++...+.+++..... .++.++.+|+.+..... .
T Consensus 7 ~k~vlVTGasg~~GIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (266)
T 3oig_A 7 GRNIVVMGVANKRSIAWGIARSLHEAGA-RLIFTYAGERLEKSVHELAGTLDRNDSIILPCDVTNDAEIETCFASIKEQV 85 (266)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHTSSSCCCEEEECCCSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCcHHHHHHHHHHHCCC-EEEEecCchHHHHHHHHHHHhcCCCCceEEeCCCCCHHHHHHHHHHHHHHh
Confidence 5678888876 3 32 6667777776 8999998875555554444322 26899999998864211 1
Q ss_pred CCeeEEEeccchhhh-----cCCCCChhhHH-----------HHHHHHHHcccCCcEEEEEE
Q 025475 114 ESFDAVIDKGTLDSL-----MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~-----~~~~~~~~~~~-----------~~l~~~~~~L~~gG~l~i~~ 159 (252)
+..|+++.+...... .....+.++.. .+++.+...++++|.++.+.
T Consensus 86 g~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 147 (266)
T 3oig_A 86 GVIHGIAHCIAFANKEELVGEYLNTNRDGFLLAHNISSYSLTAVVKAARPMMTEGGSIVTLT 147 (266)
T ss_dssp SCCCEEEECCCCCCGGGGSSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred CCeeEEEEccccccccccccchhhccHHHHHHHHHHhHHHHHHHHHHHHhhcCCCceEEEEe
Confidence 468998887543320 00011223332 34556677778888877765
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=93.04 E-value=0.64 Score=38.59 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=62.0
Q ss_pred hCCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------CCCCCCee
Q 025475 46 YIPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~~D 117 (252)
.+.++.+||-+|+| .|..+..+++. |. +|+++|.++.-++.+++.-. ..+ .|..+.. ... +.+|
T Consensus 161 ~~~~g~~VlV~GaG~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa----~~~--~d~~~~~~~~~~~~~~-~~~d 232 (339)
T 1rjw_A 161 GAKPGEWVAIYGIGGLGHVAVQYAKAMGL-NVVAVDIGDEKLELAKELGA----DLV--VNPLKEDAAKFMKEKV-GGVH 232 (339)
T ss_dssp TCCTTCEEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC----SEE--ECTTTSCHHHHHHHHH-SSEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHCCC----CEE--ecCCCccHHHHHHHHh-CCCC
Confidence 46778899999986 47777777665 55 99999999998888875311 122 2322111 001 4699
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+|+.... ....++.+.++|+++|.+++...
T Consensus 233 ~vid~~g-------------~~~~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 233 AAVVTAV-------------SKPAFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp EEEESSC-------------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred EEEECCC-------------CHHHHHHHHHHhhcCCEEEEecc
Confidence 9986422 12356778889999999887543
|
| >3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A* | Back alignment and structure |
|---|
Probab=92.92 E-value=0.19 Score=48.09 Aligned_cols=75 Identities=13% Similarity=0.161 Sum_probs=56.8
Q ss_pred CcEEEEcccCcHhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC------------C--CC-CCC
Q 025475 51 SRVLMVGCGNALMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM------------S--FF-EDE 114 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~------------~--~~-~~~ 114 (252)
.+++|+-||.|.++.-+...|. ..+.++|+++.+++..+.++. +..++..|+.++ . .+ ..+
T Consensus 541 l~~iDLFaG~GGlslGl~~AG~~~vv~avEid~~A~~ty~~N~p---~~~~~~~DI~~l~~~~~~~di~~~~~~~lp~~~ 617 (1002)
T 3swr_A 541 LRTLDVFSGCGGLSEGFHQAGISDTLWAIEMWDPAAQAFRLNNP---GSTVFTEDCNILLKLVMAGETTNSRGQRLPQKG 617 (1002)
T ss_dssp EEEEEESCTTSHHHHHHHHHTSEEEEEEECSSHHHHHHHHHHCT---TSEEECSCHHHHHHHHHHTCSBCTTCCBCCCTT
T ss_pred CeEEEeccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC---CCccccccHHHHhhhccchhhhhhhhhhcccCC
Confidence 4899999999999999999886 568899999999998888863 456666665321 1 01 235
Q ss_pred CeeEEEeccchhhh
Q 025475 115 SFDAVIDKGTLDSL 128 (252)
Q Consensus 115 ~~D~v~~~~~l~~~ 128 (252)
.+|+|+.......+
T Consensus 618 ~vDll~GGpPCQ~F 631 (1002)
T 3swr_A 618 DVEMLCGGPPCQGF 631 (1002)
T ss_dssp TCSEEEECCCCTTC
T ss_pred CeeEEEEcCCCcch
Confidence 68999998877654
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.74 Score=37.98 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=60.1
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-------CCCCCe
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-------FEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-------~~~~~~ 116 (252)
+.++.+||..|+ |.|..+..++.. |. +|+++|.+++.++.+++.- ... ..|..+... ...+.+
T Consensus 143 ~~~g~~vlV~Ga~ggiG~~~~~~~~~~G~-~V~~~~~~~~~~~~~~~~g----~~~--~~d~~~~~~~~~~~~~~~~~~~ 215 (333)
T 1v3u_A 143 VKGGETVLVSAAAGAVGSVVGQIAKLKGC-KVVGAAGSDEKIAYLKQIG----FDA--AFNYKTVNSLEEALKKASPDGY 215 (333)
T ss_dssp CCSSCEEEEESTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTT----CSE--EEETTSCSCHHHHHHHHCTTCE
T ss_pred CCCCCEEEEecCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcC----CcE--EEecCCHHHHHHHHHHHhCCCC
Confidence 567789999998 457766666654 55 8999999998888774431 111 123332110 112469
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+|+.+.. . ..+..+.++|+++|.+++..
T Consensus 216 d~vi~~~g-----------~---~~~~~~~~~l~~~G~~v~~g 244 (333)
T 1v3u_A 216 DCYFDNVG-----------G---EFLNTVLSQMKDFGKIAICG 244 (333)
T ss_dssp EEEEESSC-----------H---HHHHHHHTTEEEEEEEEECC
T ss_pred eEEEECCC-----------h---HHHHHHHHHHhcCCEEEEEe
Confidence 99986422 1 24677889999999988754
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.31 Score=40.58 Aligned_cols=94 Identities=18% Similarity=0.201 Sum_probs=61.8
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc----cc-cCCCCCCCCCe
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM----DV-RDMSFFEDESF 116 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~---~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~----d~-~~~~~~~~~~~ 116 (252)
.+ ++.+||-+|+|. |..+..+++. |. +|+++|.+++-++.+++.-. -.++.. +. .... ....+
T Consensus 168 ~~-~g~~VlV~GaG~vG~~aiqlak~~~~Ga-~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~~~~--~g~g~ 239 (344)
T 2h6e_A 168 KF-AEPVVIVNGIGGLAVYTIQILKALMKNI-TIVGISRSKKHRDFALELGA----DYVSEMKDAESLINKLT--DGLGA 239 (344)
T ss_dssp TC-SSCEEEEECCSHHHHHHHHHHHHHCTTC-EEEEECSCHHHHHHHHHHTC----SEEECHHHHHHHHHHHH--TTCCE
T ss_pred CC-CCCEEEEECCCHHHHHHHHHHHHhcCCC-EEEEEeCCHHHHHHHHHhCC----CEEeccccchHHHHHhh--cCCCc
Confidence 45 788999999974 7777777764 44 89999999998888876421 122211 11 1111 12369
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+|+..-. -...++.+.++|+++|.+++...
T Consensus 240 D~vid~~g-------------~~~~~~~~~~~l~~~G~iv~~g~ 270 (344)
T 2h6e_A 240 SIAIDLVG-------------TEETTYNLGKLLAQEGAIILVGM 270 (344)
T ss_dssp EEEEESSC-------------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred cEEEECCC-------------ChHHHHHHHHHhhcCCEEEEeCC
Confidence 99996422 12356778889999999887543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=92.82 E-value=0.42 Score=39.55 Aligned_cols=94 Identities=12% Similarity=0.091 Sum_probs=61.9
Q ss_pred hCCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------CCCCCCe
Q 025475 46 YIPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESF 116 (252)
Q Consensus 46 ~~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~~ 116 (252)
.+.++.+||-.|+ |.|..+..++.. |. +|++++.+++-++.+.+.+ +...++ |..+.. ....+.+
T Consensus 146 ~~~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~~---g~~~~~--~~~~~~~~~~~~~~~~~~~ 219 (336)
T 4b7c_A 146 QPKNGETVVISGAAGAVGSVAGQIARLKGC-RVVGIAGGAEKCRFLVEEL---GFDGAI--DYKNEDLAAGLKRECPKGI 219 (336)
T ss_dssp CCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTT---CCSEEE--ETTTSCHHHHHHHHCTTCE
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCCEEE--ECCCHHHHHHHHHhcCCCc
Confidence 3667889999998 457777777765 56 9999999998888773333 111222 222111 0113469
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+|+.+-. ...+..+.+.|+++|.+++..
T Consensus 220 d~vi~~~g--------------~~~~~~~~~~l~~~G~iv~~G 248 (336)
T 4b7c_A 220 DVFFDNVG--------------GEILDTVLTRIAFKARIVLCG 248 (336)
T ss_dssp EEEEESSC--------------HHHHHHHHTTEEEEEEEEECC
T ss_pred eEEEECCC--------------cchHHHHHHHHhhCCEEEEEe
Confidence 99986421 135778889999999988754
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.67 E-value=0.16 Score=42.72 Aligned_cols=98 Identities=18% Similarity=0.154 Sum_probs=61.2
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcccc-CCC-CCCCCCeeEEEe
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVR-DMS-FFEDESFDAVID 121 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~-~~~-~~~~~~~D~v~~ 121 (252)
.+.++.+||-+|+|. |..+..+++. |. +|+++|.+++-++.+++.-. -.++..+-. +.. ... +.+|+|+.
T Consensus 176 ~~~~g~~VlV~GaG~vG~~~~qlak~~Ga-~Vi~~~~~~~~~~~~~~lGa----~~v~~~~~~~~~~~~~~-~~~D~vid 249 (360)
T 1piw_A 176 GCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGA----DHYIATLEEGDWGEKYF-DTFDLIVV 249 (360)
T ss_dssp TCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTC----SEEEEGGGTSCHHHHSC-SCEEEEEE
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHcCC----CEEEcCcCchHHHHHhh-cCCCEEEE
Confidence 466788999999863 7777777765 66 79999999888888876421 122222111 110 012 47999986
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.-.-. + ...++.+.++|+++|.++....
T Consensus 250 ~~g~~-------~----~~~~~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 250 CASSL-------T----DIDFNIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp CCSCS-------T----TCCTTTGGGGEEEEEEEEECCC
T ss_pred CCCCC-------c----HHHHHHHHHHhcCCCEEEEecC
Confidence 43210 0 1124556788999999877543
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.45 E-value=0.84 Score=36.61 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=66.8
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCC------------HHHHHHHHHhhcC-CCCCeEEEccccCCCCC--
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDIS------------SVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF-- 111 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s------------~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~-- 111 (252)
++++|-.|++.|. ++..+++.|. +|+.+|.+ ...++.+...+.. ..++.++.+|+.+....
T Consensus 10 gk~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~ 88 (287)
T 3pxx_A 10 DKVVLVTGGARGQGRSHAVKLAEEGA-DIILFDICHDIETNEYPLATSRDLEEAGLEVEKTGRKAYTAEVDVRDRAAVSR 88 (287)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECCSCCTTSCSCCCCHHHHHHHHHHHHHTTSCEEEEECCTTCHHHHHH
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcccccccccccchhhhHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 5578888987653 5666777776 89999987 5555555544432 34788999999875311
Q ss_pred -------CCCCeeEEEeccchhhhcCCCCChhhHH-----------HHHHHHHHcccCCcEEEEEE
Q 025475 112 -------EDESFDAVIDKGTLDSLMCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 112 -------~~~~~D~v~~~~~l~~~~~~~~~~~~~~-----------~~l~~~~~~L~~gG~l~i~~ 159 (252)
.-+..|+++.+......... .+.++.. .+++.+...|+.+|.++.+.
T Consensus 89 ~~~~~~~~~g~id~lv~nAg~~~~~~~-~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 153 (287)
T 3pxx_A 89 ELANAVAEFGKLDVVVANAGICPLGAH-LPVQAFADAFDVDFVGVINTVHAALPYLTSGASIITTG 153 (287)
T ss_dssp HHHHHHHHHSCCCEEEECCCCCCCCTT-CCTHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred HHHHHHHHcCCCCEEEECCCcCcccCc-CCHHHHHHHhhhhhhhhHHHHHHHHHHhhcCcEEEEec
Confidence 01468999987654322100 1223332 33455667777788876654
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=92.32 E-value=0.29 Score=40.68 Aligned_cols=95 Identities=13% Similarity=0.164 Sum_probs=59.8
Q ss_pred CCCCCcEEEEccc--CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----C-CCCCCeeE
Q 025475 47 IPTSSRVLMVGCG--NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----F-FEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G--~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~~~D~ 118 (252)
+.++.+||-.|+| .|..+..+++. |. +|+++|.+++-++.+++.-. -.++...-.+.. . .....+|+
T Consensus 142 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lga----~~~~~~~~~~~~~~~~~~~~~~g~Dv 216 (340)
T 3gms_A 142 LQRNDVLLVNACGSAIGHLFAQLSQILNF-RLIAVTRNNKHTEELLRLGA----AYVIDTSTAPLYETVMELTNGIGADA 216 (340)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTC----SEEEETTTSCHHHHHHHHTTTSCEEE
T ss_pred cCCCCEEEEeCCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhCCC----cEEEeCCcccHHHHHHHHhCCCCCcE
Confidence 5678899999987 57777777765 66 89999999888888876422 122221111110 0 12346999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+..-.-. . +....++|+++|.+++...
T Consensus 217 vid~~g~~----------~----~~~~~~~l~~~G~iv~~G~ 244 (340)
T 3gms_A 217 AIDSIGGP----------D----GNELAFSLRPNGHFLTIGL 244 (340)
T ss_dssp EEESSCHH----------H----HHHHHHTEEEEEEEEECCC
T ss_pred EEECCCCh----------h----HHHHHHHhcCCCEEEEEee
Confidence 99643211 1 1233478999999887654
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=92.32 E-value=0.64 Score=38.44 Aligned_cols=95 Identities=15% Similarity=0.186 Sum_probs=61.8
Q ss_pred hCCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----C-CCCCCee
Q 025475 46 YIPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----F-FEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~~~D 117 (252)
.+.++.+||-.|+ |.|..+..+++. |. ++++++.+++-++.+++.- .-.++..+-.+.. . .....+|
T Consensus 145 ~~~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g----a~~~~~~~~~~~~~~~~~~~~~~g~D 219 (334)
T 3qwb_A 145 HVKKGDYVLLFAAAGGVGLILNQLLKMKGA-HTIAVASTDEKLKIAKEYG----AEYLINASKEDILRQVLKFTNGKGVD 219 (334)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTT----CSEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred cCCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcC----CcEEEeCCCchHHHHHHHHhCCCCce
Confidence 3567889999994 457777777766 55 8999999998888777642 1122221111110 0 1234699
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+..-.- ..++.+.+.|+++|.+++..
T Consensus 220 ~vid~~g~--------------~~~~~~~~~l~~~G~iv~~G 247 (334)
T 3qwb_A 220 ASFDSVGK--------------DTFEISLAALKRKGVFVSFG 247 (334)
T ss_dssp EEEECCGG--------------GGHHHHHHHEEEEEEEEECC
T ss_pred EEEECCCh--------------HHHHHHHHHhccCCEEEEEc
Confidence 99964321 34667778999999988754
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=92.27 E-value=0.54 Score=39.13 Aligned_cols=95 Identities=21% Similarity=0.344 Sum_probs=61.2
Q ss_pred hCCCCCcEEEEccc--CcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------CCCC-C
Q 025475 46 YIPTSSRVLMVGCG--NALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFED-E 114 (252)
Q Consensus 46 ~~~~~~~vLD~G~G--~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~~~~-~ 114 (252)
.+.++.+||-.|+| .|..+..++.. |. +|+++|.+++..+.+++.-. ..++ |..+.. .... +
T Consensus 167 ~~~~g~~vlV~Gagg~iG~~~~~~a~~~~Ga-~Vi~~~~~~~~~~~~~~~g~----~~~~--~~~~~~~~~~~~~~~~~~ 239 (347)
T 1jvb_A 167 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGA-TIIGVDVREEAVEAAKRAGA----DYVI--NASMQDPLAEIRRITESK 239 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCC-EEEEEESSHHHHHHHHHHTC----SEEE--ETTTSCHHHHHHHHTTTS
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHHcCCC-eEEEEcCCHHHHHHHHHhCC----CEEe--cCCCccHHHHHHHHhcCC
Confidence 46678899999997 45666565554 55 89999999988888865421 1222 222211 0112 4
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.+|+|+.... -...++.+.++|+++|.+++...
T Consensus 240 ~~d~vi~~~g-------------~~~~~~~~~~~l~~~G~iv~~g~ 272 (347)
T 1jvb_A 240 GVDAVIDLNN-------------SEKTLSVYPKALAKQGKYVMVGL 272 (347)
T ss_dssp CEEEEEESCC-------------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred CceEEEECCC-------------CHHHHHHHHHHHhcCCEEEEECC
Confidence 7999996422 12356778899999999887543
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=0.57 Score=38.59 Aligned_cols=95 Identities=12% Similarity=0.086 Sum_probs=62.1
Q ss_pred CCCCCcEEEEc-c-cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----C-CCCCCeeE
Q 025475 47 IPTSSRVLMVG-C-GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----F-FEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G-~-G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~~~D~ 118 (252)
+.++.+||-.| + |.|..+..+++. |. ++++++.+++-++.+++.-. -.++..+-.+.. . .....+|+
T Consensus 138 ~~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~Ga----~~~~~~~~~~~~~~~~~~~~~~g~Dv 212 (325)
T 3jyn_A 138 VKPGEIILFHAAAGGVGSLACQWAKALGA-KLIGTVSSPEKAAHAKALGA----WETIDYSHEDVAKRVLELTDGKKCPV 212 (325)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHTTTCCEEE
T ss_pred CCCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC----CEEEeCCCccHHHHHHHHhCCCCceE
Confidence 56788999998 3 357777777765 66 89999999998888876421 122221111110 0 12346999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+..-.- ..+..+.+.|+++|.+++...
T Consensus 213 vid~~g~--------------~~~~~~~~~l~~~G~iv~~g~ 240 (325)
T 3jyn_A 213 VYDGVGQ--------------DTWLTSLDSVAPRGLVVSFGN 240 (325)
T ss_dssp EEESSCG--------------GGHHHHHTTEEEEEEEEECCC
T ss_pred EEECCCh--------------HHHHHHHHHhcCCCEEEEEec
Confidence 9964321 246677889999999888653
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.07 E-value=0.55 Score=38.97 Aligned_cols=93 Identities=15% Similarity=0.128 Sum_probs=61.4
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-------CCCCCe
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-------FEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-------~~~~~~ 116 (252)
+.++.+||-.|+ |.|..+..++.. |. ++++++.+++.++.+++.+ +....+ |..+... ...+.+
T Consensus 153 ~~~g~~vlI~Ga~g~iG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~~---g~~~~~--d~~~~~~~~~~~~~~~~~~~ 226 (345)
T 2j3h_A 153 PKEGETVYVSAASGAVGQLVGQLAKMMGC-YVVGSAGSKEKVDLLKTKF---GFDDAF--NYKEESDLTAALKRCFPNGI 226 (345)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTS---CCSEEE--ETTSCSCSHHHHHHHCTTCE
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc---CCceEE--ecCCHHHHHHHHHHHhCCCC
Confidence 567889999997 467777777665 55 8999999998888876433 111222 3222100 112469
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+|+.+.. . ..+..+.++|+++|.+++..
T Consensus 227 d~vi~~~g------------~--~~~~~~~~~l~~~G~~v~~G 255 (345)
T 2j3h_A 227 DIYFENVG------------G--KMLDAVLVNMNMHGRIAVCG 255 (345)
T ss_dssp EEEEESSC------------H--HHHHHHHTTEEEEEEEEECC
T ss_pred cEEEECCC------------H--HHHHHHHHHHhcCCEEEEEc
Confidence 99986422 1 25778889999999988754
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=92.06 E-value=0.52 Score=38.31 Aligned_cols=109 Identities=14% Similarity=0.147 Sum_probs=65.5
Q ss_pred CCcEEEEccc----CcH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCG----NAL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G----~G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
+.++|-.|++ .|. ++..+++.|. +|++++.++...+..+......+.+.++.+|+.+.... .-+.
T Consensus 30 ~k~vlVTGasg~~GIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 108 (296)
T 3k31_A 30 GKKGVIIGVANDKSLAWGIAKAVCAQGA-EVALTYLSETFKKRVDPLAESLGVKLTVPCDVSDAESVDNMFKVLAEEWGS 108 (296)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHHTCCEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEEeCCCCCCHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5578888874 342 6666777776 89999998755444444433334578899999875311 1147
Q ss_pred eeEEEeccchhhh-----cCCCCChhhH-----------HHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSL-----MCGTNAPISA-----------SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~-----~~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.|+++.+..+... .....+.++. ..+++.+...++.+|.++.+.
T Consensus 109 iD~lVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~IV~is 168 (296)
T 3k31_A 109 LDFVVHAVAFSDKNELKGRYVDTSLGNFLTSMHISCYSFTYIASKAEPLMTNGGSILTLS 168 (296)
T ss_dssp CSEEEECCCCCCHHHHTSCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCTTCEEEEEEE
T ss_pred CCEEEECCCcCCcccccCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCEEEEEE
Confidence 8999987653310 0001122333 233455666777788877755
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=0.12 Score=47.47 Aligned_cols=104 Identities=16% Similarity=0.241 Sum_probs=64.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHc----------C---CCcEEEEeC---CHHHHHHHHHh-----------hcC-------
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD----------G---YEDIVNIDI---SSVAIDMMKMK-----------YEE------- 94 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~----------~---~~~v~~vD~---s~~~i~~a~~~-----------~~~------- 94 (252)
+..+|+|+|-|+|.....+.+. . ..+++.+|. +.+.+..+-.. +..
T Consensus 58 ~~~~i~e~gfG~G~n~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ 137 (689)
T 3pvc_A 58 QSCIFAETGFGTGLNFLTLWRDFALFRQQSPNATLRRLHYISFEKYPLHVADLASAHARWPELASFAEQLRAQWPLPLAG 137 (689)
T ss_dssp SEEEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCCCSE
T ss_pred CceEEEEecCchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEeeCCCCCHHHHHHHHHhCcchhHHHHHHHHhCcccCCC
Confidence 3359999999999877666442 0 146899998 55554443221 111
Q ss_pred -------CC--CCeEEEccccCCC-CCC---CCCeeEEEeccchhhhcCCCCChhh-HHHHHHHHHHcccCCcEEEE
Q 025475 95 -------IP--QLKYLQMDVRDMS-FFE---DESFDAVIDKGTLDSLMCGTNAPIS-ASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 95 -------~~--~v~~~~~d~~~~~-~~~---~~~~D~v~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~i 157 (252)
.+ .++++.+|+.+.. .+. ...+|+++....--. .+++. ...++..+.+++++||.+..
T Consensus 138 ~~r~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~da~flD~f~p~-----~np~~w~~~~~~~l~~~~~~g~~~~t 209 (689)
T 3pvc_A 138 CHRILLADGAITLDLWFGDVNTLLPTLDDSLNNQVDAWFLDGFAPA-----KNPDMWNEQLFNAMARMTRPGGTFST 209 (689)
T ss_dssp EEEEEETTTTEEEEEEESCHHHHGGGCCGGGTTCEEEEEECSSCC-------CCTTCSHHHHHHHHHHEEEEEEEEE
T ss_pred ceEEEecCCcEEEEEEccCHHHHHhhcccccCCceeEEEECCCCCC-----CChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 01 3567777776532 122 467999998753211 12232 26788999999999998653
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.95 E-value=0.56 Score=37.26 Aligned_cols=110 Identities=11% Similarity=0.115 Sum_probs=65.8
Q ss_pred CCCcEEEEccc--Cc--H-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCC
Q 025475 49 TSSRVLMVGCG--NA--L-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G--~G--~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~ 114 (252)
++++||-.|++ .| . ++..+++.|. +|++++.+....+.+++.....+.+.++.+|+.+.... ..+
T Consensus 13 ~~k~vlITGa~~~~giG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 91 (271)
T 3ek2_A 13 DGKRILLTGLLSNRSIAYGIAKACKREGA-ELAFTYVGDRFKDRITEFAAEFGSELVFPCDVADDAQIDALFASLKTHWD 91 (271)
T ss_dssp TTCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHHcCC-CEEEEecchhhHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 56689999965 33 2 5556666676 89999988654444444443345688999999875311 124
Q ss_pred CeeEEEeccchhhh------cCCCCChhhHH-----------HHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSL------MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~------~~~~~~~~~~~-----------~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|+++.+...... .....+.++.. .+++.+...++++|.++.+.
T Consensus 92 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 153 (271)
T 3ek2_A 92 SLDGLVHSIGFAPREAIAGDFLDGLTRENFRIAHDISAYSFPALAKAALPMLSDDASLLTLS 153 (271)
T ss_dssp CEEEEEECCCCCCGGGGSSCTTTTCCHHHHHHHHHHHTTHHHHHHHHHGGGEEEEEEEEEEE
T ss_pred CCCEEEECCccCccccccCccccccCHHHHHHHHhhhHHHHHHHHHHHHHHhccCceEEEEe
Confidence 78999987654321 00002333333 23455566666778776654
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.93 E-value=0.59 Score=38.92 Aligned_cols=95 Identities=16% Similarity=0.250 Sum_probs=61.5
Q ss_pred hCCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-------CCCCC
Q 025475 46 YIPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-------FEDES 115 (252)
Q Consensus 46 ~~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-------~~~~~ 115 (252)
.+.++.+||..|+ |.|..+..++.. |. +|+++|.+++..+.+++.- .... .|..+... ...+.
T Consensus 166 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~V~~~~~~~~~~~~~~~~g----~~~~--~d~~~~~~~~~~~~~~~~~~ 238 (347)
T 2hcy_A 166 NLMAGHWVAISGAAGGLGSLAVQYAKAMGY-RVLGIDGGEGKEELFRSIG----GEVF--IDFTKEKDIVGAVLKATDGG 238 (347)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSTTHHHHHHHTT----CCEE--EETTTCSCHHHHHHHHHTSC
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCC-cEEEEcCCHHHHHHHHHcC----CceE--EecCccHhHHHHHHHHhCCC
Confidence 3567889999998 467777666664 55 8999999988777776531 1122 23331110 01126
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+|+|+.+.. ....++.+.+.|+++|.+++...
T Consensus 239 ~D~vi~~~g-------------~~~~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 239 AHGVINVSV-------------SEAAIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp EEEEEECSS-------------CHHHHHHHTTSEEEEEEEEECCC
T ss_pred CCEEEECCC-------------cHHHHHHHHHHHhcCCEEEEEeC
Confidence 999986422 12357888899999999887653
|
| >3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A* | Back alignment and structure |
|---|
Probab=91.68 E-value=0.3 Score=44.76 Aligned_cols=102 Identities=16% Similarity=0.244 Sum_probs=63.8
Q ss_pred CcEEEEcccCcHhHHHHHHc------------C-CCcEEEEeC---CHHHHHHHHHhhc-----------CC--------
Q 025475 51 SRVLMVGCGNALMSEDMVKD------------G-YEDIVNIDI---SSVAIDMMKMKYE-----------EI-------- 95 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~------------~-~~~v~~vD~---s~~~i~~a~~~~~-----------~~-------- 95 (252)
.+|+|+|-|+|.+....... . .-+++++|. +++.+..+-..+. ..
T Consensus 68 ~~i~e~gfG~Gln~l~~~~~~~~~~~~~p~~~~~~l~~~s~E~~p~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 147 (676)
T 3ps9_A 68 FVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLPGCH 147 (676)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHHCCCCCSEEE
T ss_pred eEEEEeCCchHHHHHHHHHHHHHhhhhCcCCCCceEEEEEEeCCCCCHHHHHHHHHhChhhHHHHHHHHHhCcccCCCce
Confidence 49999999999866665442 0 135899998 7777664433210 00
Q ss_pred --------CCCeEEEccccCC-CCCC---CCCeeEEEeccchhhhcCCCCChhh-HHHHHHHHHHcccCCcEEEE
Q 025475 96 --------PQLKYLQMDVRDM-SFFE---DESFDAVIDKGTLDSLMCGTNAPIS-ASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 96 --------~~v~~~~~d~~~~-~~~~---~~~~D~v~~~~~l~~~~~~~~~~~~-~~~~l~~~~~~L~~gG~l~i 157 (252)
-.+++..+|+.+. +.+. ...+|+++....--.. +++. -..++..+.+++++||.+..
T Consensus 148 ~~~~~~~~~~l~l~~gd~~~~l~~~~~~~~~~~d~~~~D~f~p~~-----np~~w~~~~~~~l~~~~~~g~~~~t 217 (676)
T 3ps9_A 148 RLLLDAGRVTLDLWFGDINELTSQLDDSLNQKVDAWFLDGFAPAK-----NPDMWTQNLFNAMARLARPGGTLAT 217 (676)
T ss_dssp EEEEGGGTEEEEEEESCHHHHGGGBCGGGTTCEEEEEECCSCGGG-----CGGGSCHHHHHHHHHHEEEEEEEEE
T ss_pred EEEecCCcEEEEEecCCHHHHHHhcccccCCcccEEEECCCCCcC-----ChhhhhHHHHHHHHHHhCCCCEEEe
Confidence 1234555666543 2121 4679999987532222 3333 36788999999999998654
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.67 E-value=0.76 Score=38.40 Aligned_cols=93 Identities=16% Similarity=0.268 Sum_probs=60.2
Q ss_pred hCCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------C-CCCCC
Q 025475 46 YIPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------F-FEDES 115 (252)
Q Consensus 46 ~~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~-~~~~~ 115 (252)
.+.++.+||-.|+ |.|..+..++.. |. +|++++.+++.++.+++.-. ... .|..+.. . .....
T Consensus 167 ~~~~g~~vlV~GasggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga----~~~--~d~~~~~~~~~~~~~~~~~~ 239 (351)
T 1yb5_A 167 CVKAGESVLVHGASGGVGLAACQIARAYGL-KILGTAGTEEGQKIVLQNGA----HEV--FNHREVNYIDKIKKYVGEKG 239 (351)
T ss_dssp CCCTTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTTC----SEE--EETTSTTHHHHHHHHHCTTC
T ss_pred CCCCcCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChhHHHHHHHcCC----CEE--EeCCCchHHHHHHHHcCCCC
Confidence 3567889999997 457766666665 55 89999999988887765321 122 2222211 0 12236
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+|+.+.. ...+..+.++|+++|.+++..
T Consensus 240 ~D~vi~~~G--------------~~~~~~~~~~l~~~G~iv~~g 269 (351)
T 1yb5_A 240 IDIIIEMLA--------------NVNLSKDLSLLSHGGRVIVVG 269 (351)
T ss_dssp EEEEEESCH--------------HHHHHHHHHHEEEEEEEEECC
T ss_pred cEEEEECCC--------------hHHHHHHHHhccCCCEEEEEe
Confidence 999986422 124667789999999988755
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.60 E-value=0.75 Score=37.85 Aligned_cols=93 Identities=12% Similarity=0.100 Sum_probs=60.2
Q ss_pred hCCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------C-CCCCC
Q 025475 46 YIPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------F-FEDES 115 (252)
Q Consensus 46 ~~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~-~~~~~ 115 (252)
.+.++.+||-.|+ |.|..+..++.. |. +++++|.+++..+.+++.-. ...+ |..+.. . .....
T Consensus 137 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~V~~~~~~~~~~~~~~~~g~----~~~~--~~~~~~~~~~~~~~~~~~~ 209 (327)
T 1qor_A 137 EIKPDEQFLFHAAAGGVGLIACQWAKALGA-KLIGTVGTAQKAQSALKAGA----WQVI--NYREEDLVERLKEITGGKK 209 (327)
T ss_dssp CCCTTCEEEESSTTBHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHTC----SEEE--ETTTSCHHHHHHHHTTTCC
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC----CEEE--ECCCccHHHHHHHHhCCCC
Confidence 3567889999994 457766666654 66 89999999988887776311 1122 222211 0 12336
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+|+.+.. ...++.+.++|+++|.+++..
T Consensus 210 ~D~vi~~~g--------------~~~~~~~~~~l~~~G~iv~~g 239 (327)
T 1qor_A 210 VRVVYDSVG--------------RDTWERSLDCLQRRGLMVSFG 239 (327)
T ss_dssp EEEEEECSC--------------GGGHHHHHHTEEEEEEEEECC
T ss_pred ceEEEECCc--------------hHHHHHHHHHhcCCCEEEEEe
Confidence 999986432 124677788999999988754
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=91.58 E-value=1.8 Score=35.78 Aligned_cols=107 Identities=9% Similarity=0.074 Sum_probs=68.3
Q ss_pred CCcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CC-------------CCeEEEccccC
Q 025475 50 SSRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IP-------------QLKYLQMDVRD 107 (252)
Q Consensus 50 ~~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~-------------~v~~~~~d~~~ 107 (252)
..+|.-+|+|+ | .++..++..|. +|+..|++++.++.+..++.. .+ +++. ..|+.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~-~~~l~~ 83 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGF-RVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISS-CTNLAE 83 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEE-ECCHHH
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhccc-ccchHh
Confidence 34799999995 4 46666777777 899999999988877665421 01 1111 111111
Q ss_pred CCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 108 MSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 108 ~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
. -...|+|+-. +.+ +.+-.+++++++-++++|+-+|.-.+-+-+......-
T Consensus 84 a----~~~ad~ViEa-v~E-------~l~iK~~lf~~l~~~~~~~aIlaSNTSsl~is~ia~~ 134 (319)
T 3ado_A 84 A----VEGVVHIQEC-VPE-------NLDLKRKIFAQLDSIVDDRVVLSSSSSCLLPSKLFTG 134 (319)
T ss_dssp H----TTTEEEEEEC-CCS-------CHHHHHHHHHHHHTTCCSSSEEEECCSSCCHHHHHTT
T ss_pred H----hccCcEEeec-ccc-------HHHHHHHHHHHHHHHhhhcceeehhhhhccchhhhhh
Confidence 1 1347887743 233 3378899999999999998877665555555444443
|
| >2hwk_A Helicase NSP2; rossman fold, alpha/beta/alpha, multi-domain, hydrolase; 2.45A {Venezuelan equine encephalitis virus} | Back alignment and structure |
|---|
Probab=91.51 E-value=0.51 Score=38.16 Aligned_cols=123 Identities=12% Similarity=0.096 Sum_probs=64.9
Q ss_pred ccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhh---cCCCCCeEE-EccccCCCCCCCCCeeEEEeccc----hhhh-
Q 025475 58 CGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKY---EEIPQLKYL-QMDVRDMSFFEDESFDAVIDKGT----LDSL- 128 (252)
Q Consensus 58 ~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~---~~~~~v~~~-~~d~~~~~~~~~~~~D~v~~~~~----l~~~- 128 (252)
++.|.....+.+.....+..||..-.. -.++. .-.+..++. .+|+.+.. ..+.+|+|+++.. .||.
T Consensus 150 ~~~~~~~~~~~k~~g~~vl~v~~~~~~---p~k~v~wi~Pi~GAt~~~~lDfg~p~--~~~k~DvV~SDMApn~sGh~yq 224 (320)
T 2hwk_A 150 HPQSDFSSFVSKLKGRTVLVVGEKLSV---PGKMVDWLSDRPEATFRARLDLGIPG--DVPKYDIIFVNVRTPYKYHHYQ 224 (320)
T ss_dssp CCCCCCHHHHHTSSCSEEEEEESCCCC---TTSEEEEEESSTTCSEECCGGGCSCT--TSCCEEEEEEECCCCCCSCHHH
T ss_pred cCCCCHHHHHhhCCCcEEEEEeccccc---CCceeEeeccCCCceeecccccCCcc--ccCcCCEEEEcCCCCCCCcccc
Confidence 555666666665533366666532110 00000 001233444 67776654 3367999999753 2221
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhccccccceeEE-EEEecC
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIE-LYIIAR 186 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 186 (252)
-| ........-+++-+.++|+|||.+++..+..++-....+.......... ..+.|.
T Consensus 225 QC-~DHarii~Lal~fA~~vLkPGGtfV~KvyggaDr~se~lv~~LaR~F~~Vr~vKP~ 282 (320)
T 2hwk_A 225 QC-EDHAIKLSMLTKKACLHLNPGGTCVSIGYGYADRASESIIGAIARQFKFSRVCKPK 282 (320)
T ss_dssp HH-HHHHHHHHHTHHHHGGGEEEEEEEEEEECCCCSHHHHHHHHHHHTTEEEEEEECCT
T ss_pred cc-chHHHHHHHHHHHHHHhcCCCceEEEEEecCCcccHHHHHHHHHHhcceeeeeCCC
Confidence 00 0000112235677789999999999999998854444444444444433 344444
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=91.50 E-value=0.82 Score=36.22 Aligned_cols=108 Identities=13% Similarity=0.280 Sum_probs=67.7
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
.++++|-.|++.|. .+..+++.|. +|++++.+++.++...+.+. .++.++.+|+.+.... ..+..
T Consensus 7 ~gk~~lVTGas~gIG~a~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (255)
T 4eso_A 7 QGKKAIVIGGTHGMGLATVRRLVEGGA-EVLLTGRNESNIARIREEFG--PRVHALRSDIADLNEIAVLGAAAGQTLGAI 83 (255)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHHHHSSE
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CcceEEEccCCCHHHHHHHHHHHHHHhCCC
Confidence 35688888987653 5666677776 89999999987776666552 3678899999875311 11478
Q ss_pred eEEEeccchhhh-cCCCCChhhHH-----------HHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSL-MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~-~~~~~~~~~~~-----------~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+++.+...... .+...+.++.. .+++.+...++++|.++.+.
T Consensus 84 d~lv~nAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 138 (255)
T 4eso_A 84 DLLHINAGVSELEPFDQVSEASYDRQFAVNTKGAFFTVQRLTPLIREGGSIVFTS 138 (255)
T ss_dssp EEEEECCCCCCCBCGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CEEEECCCCCCCCChhhCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCEEEEEC
Confidence 999887543321 00111233332 23455566677788776654
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=91.36 E-value=0.93 Score=38.00 Aligned_cols=95 Identities=14% Similarity=0.126 Sum_probs=62.0
Q ss_pred hCCCCCcEEEEc--ccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----CCCCCCeeE
Q 025475 46 YIPTSSRVLMVG--CGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDA 118 (252)
Q Consensus 46 ~~~~~~~vLD~G--~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~~D~ 118 (252)
.+.++.+||-.| .|.|..+..++.. |. +|++++.+++-++.+++.- .-.++..+-.+.. ......+|+
T Consensus 160 ~~~~g~~VlV~Ga~G~iG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~G----a~~~~~~~~~~~~~~~~~~~~~g~D~ 234 (362)
T 2c0c_A 160 GLSEGKKVLVTAAAGGTGQFAMQLSKKAKC-HVIGTCSSDEKSAFLKSLG----CDRPINYKTEPVGTVLKQEYPEGVDV 234 (362)
T ss_dssp CCCTTCEEEETTTTBTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHTT----CSEEEETTTSCHHHHHHHHCTTCEEE
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHcC----CcEEEecCChhHHHHHHHhcCCCCCE
Confidence 366788999999 3468888888776 55 8999999998888877631 1122221111110 011246999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+..-. . ..++.+.++|+++|.+++..
T Consensus 235 vid~~g------------~--~~~~~~~~~l~~~G~iv~~g 261 (362)
T 2c0c_A 235 VYESVG------------G--AMFDLAVDALATKGRLIVIG 261 (362)
T ss_dssp EEECSC------------T--HHHHHHHHHEEEEEEEEECC
T ss_pred EEECCC------------H--HHHHHHHHHHhcCCEEEEEe
Confidence 986421 1 35777889999999987754
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=91.24 E-value=0.89 Score=32.21 Aligned_cols=67 Identities=18% Similarity=0.349 Sum_probs=45.6
Q ss_pred CCcEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEec
Q 025475 50 SSRVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDK 122 (252)
Q Consensus 50 ~~~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~ 122 (252)
..+|+-+|+|. |. ++..+.+.|. +|+++|.+++.++.++.. .+.++.+|..+... ..-..+|+|+..
T Consensus 6 ~~~v~I~G~G~iG~~la~~L~~~g~-~V~~id~~~~~~~~~~~~-----~~~~~~gd~~~~~~l~~~~~~~~d~vi~~ 77 (141)
T 3llv_A 6 RYEYIVIGSEAAGVGLVRELTAAGK-KVLAVDKSKEKIELLEDE-----GFDAVIADPTDESFYRSLDLEGVSAVLIT 77 (141)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHT-----TCEEEECCTTCHHHHHHSCCTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHC-----CCcEEECCCCCHHHHHhCCcccCCEEEEe
Confidence 34799999974 33 4444455566 899999999988777653 35778888876421 223468988864
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=1.9 Score=35.49 Aligned_cols=90 Identities=19% Similarity=0.206 Sum_probs=57.9
Q ss_pred CcEEEEcccC--cHhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
++|.-+|+|. +.++..+...|. .+|+++|.+++.++.+++. +.+.....+..+. .-...|+|+..-.
T Consensus 34 ~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~----G~~~~~~~~~~~~---~~~~aDvVilavp--- 103 (314)
T 3ggo_A 34 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIIDEGTTSIAKV---EDFSPDFVMLSSP--- 103 (314)
T ss_dssp SEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCSEEESCTTGG---GGGCCSEEEECSC---
T ss_pred CEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHC----CCcchhcCCHHHH---hhccCCEEEEeCC---
Confidence 5799999884 456677777764 3899999999888777643 1111122232220 1235899986532
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
+.....+++++...++++..++-
T Consensus 104 -------~~~~~~vl~~l~~~l~~~~iv~d 126 (314)
T 3ggo_A 104 -------VRTFREIAKKLSYILSEDATVTD 126 (314)
T ss_dssp -------GGGHHHHHHHHHHHSCTTCEEEE
T ss_pred -------HHHHHHHHHHHhhccCCCcEEEE
Confidence 34456788888888988876543
|
| >3iei_A Leucine carboxyl methyltransferase 1; LCMT-1, S-adenosyl-L-methionine; HET: SAH MES; 1.90A {Homo sapiens} PDB: 3p71_T* 3mnt_A* 3o7w_A* | Back alignment and structure |
|---|
Probab=91.14 E-value=5.8 Score=32.91 Aligned_cols=109 Identities=10% Similarity=0.139 Sum_probs=74.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcC-------------------------CCCCeEE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEE-------------------------IPQLKYL 101 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~-------------------------~~~v~~~ 101 (252)
+...|+-+|||.=.....+...+ ...++=||. |+.++.=++.+.. .++.+.+
T Consensus 90 ~~~QVV~LGaGlDTr~~RL~~~~~~~~~~~EVD~-P~vi~~K~~~l~~~~~l~~~lg~~~~~~~~~~~~~~l~s~~y~~v 168 (334)
T 3iei_A 90 CHCQIVNLGAGMDTTFWRLKDEDLLSSKYFEVDF-PMIVTRKLHSIKCKPPLSSPILELHSEDTLQMDGHILDSKRYAVI 168 (334)
T ss_dssp TCSEEEEETCTTCCHHHHHHHTTCCCSEEEEEEC-HHHHHHHHHHHHHCHHHHHHHHHHSSSSSCBCCTTEEECSSEEEE
T ss_pred CCCEEEEeCCCcCchHHHhcCCCCCCCeEEECCc-HHHHHHHHHHHhhchhhhhhhcccccccccccccccCCCCceEEE
Confidence 45689999999877777776642 336777776 5555543333321 2467888
Q ss_pred EccccCCCC---------CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 102 QMDVRDMSF---------FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 102 ~~d~~~~~~---------~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
.+|+.+... +.....=++++-.++.++ +++...++++.+.+.. ++|.+++.+...|.
T Consensus 169 ~~DL~d~~~l~~~L~~~g~d~~~Ptl~iaEGvL~YL-----~~~~~~~ll~~ia~~f-~~~~~i~yE~i~p~ 234 (334)
T 3iei_A 169 GADLRDLSELEEKLKKCNMNTQLPTLLIAECVLVYM-----TPEQSANLLKWAANSF-ERAMFINYEQVNMG 234 (334)
T ss_dssp ECCTTCHHHHHHHHHHTTCCTTSCEEEEEESCGGGS-----CHHHHHHHHHHHHHHC-SSEEEEEEEECCTT
T ss_pred ccccccchhHHHHHHhcCCCCCCCEEEEEchhhhCC-----CHHHHHHHHHHHHHhC-CCceEEEEeccCCC
Confidence 999877310 233445678888899999 8899999999999876 56666666765443
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=91.06 E-value=3.6 Score=30.42 Aligned_cols=95 Identities=15% Similarity=0.126 Sum_probs=56.5
Q ss_pred CCcEEEEcccC-cH-hHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC---CC-CCCCeeEEEec
Q 025475 50 SSRVLMVGCGN-AL-MSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---FF-EDESFDAVIDK 122 (252)
Q Consensus 50 ~~~vLD~G~G~-G~-~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~---~~-~~~~~D~v~~~ 122 (252)
+.+|+-+|+|. |. ++..+... |. +|+++|.+++.++.++.. .+..+.+|..+.. .. .-..+|+|+..
T Consensus 39 ~~~v~IiG~G~~G~~~a~~L~~~~g~-~V~vid~~~~~~~~~~~~-----g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~ 112 (183)
T 3c85_A 39 HAQVLILGMGRIGTGAYDELRARYGK-ISLGIEIREEAAQQHRSE-----GRNVISGDATDPDFWERILDTGHVKLVLLA 112 (183)
T ss_dssp TCSEEEECCSHHHHHHHHHHHHHHCS-CEEEEESCHHHHHHHHHT-----TCCEEECCTTCHHHHHTBCSCCCCCEEEEC
T ss_pred CCcEEEECCCHHHHHHHHHHHhccCC-eEEEEECCHHHHHHHHHC-----CCCEEEcCCCCHHHHHhccCCCCCCEEEEe
Confidence 45899999874 54 44445555 65 899999999887776543 3566777765421 12 23468988863
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
-. ++..-..++. ..+.+.+++.+++...
T Consensus 113 ~~---------~~~~~~~~~~-~~~~~~~~~~ii~~~~ 140 (183)
T 3c85_A 113 MP---------HHQGNQTALE-QLQRRNYKGQIAAIAE 140 (183)
T ss_dssp CS---------SHHHHHHHHH-HHHHTTCCSEEEEEES
T ss_pred CC---------ChHHHHHHHH-HHHHHCCCCEEEEEEC
Confidence 21 1122222333 3444566777776543
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=91.06 E-value=2.2 Score=35.24 Aligned_cols=98 Identities=12% Similarity=0.102 Sum_probs=60.4
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----C-CCCCCeeE
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----F-FEDESFDA 118 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~~~D~ 118 (252)
...++.+||-+|+|. |..+..++. .+..+|+++|.+++-++.+++.-.. .++.-.-.+.. . .....+|.
T Consensus 160 ~~~~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~~~Ga~----~~i~~~~~~~~~~v~~~t~g~g~d~ 235 (348)
T 4eez_A 160 GVKPGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAKKIGAD----VTINSGDVNPVDEIKKITGGLGVQS 235 (348)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHHHTTCS----EEEEC-CCCHHHHHHHHTTSSCEEE
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhhhcCCe----EEEeCCCCCHHHHhhhhcCCCCceE
Confidence 356788999999985 445555554 4556999999999888877765322 22221111110 0 12234777
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
++.... -...+....++|+++|.+++...
T Consensus 236 ~~~~~~-------------~~~~~~~~~~~l~~~G~~v~~g~ 264 (348)
T 4eez_A 236 AIVCAV-------------ARIAFEQAVASLKPMGKMVAVAV 264 (348)
T ss_dssp EEECCS-------------CHHHHHHHHHTEEEEEEEEECCC
T ss_pred EEEecc-------------CcchhheeheeecCCceEEEEec
Confidence 764321 13457778889999999887553
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=91.05 E-value=1.5 Score=35.21 Aligned_cols=74 Identities=16% Similarity=0.236 Sum_probs=52.3
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
++++|-.|++.|. ++..+++.|. +|+++|.+++..+.....+ ..++.++.+|+.+.... .-+..|
T Consensus 29 gk~vlVTGas~gIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~--~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 105 (277)
T 3gvc_A 29 GKVAIVTGAGAGIGLAVARRLADEGC-HVLCADIDGDAADAAATKI--GCGAAACRVDVSDEQQIIAMVDACVAAFGGVD 105 (277)
T ss_dssp TCEEEETTTTSTHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHH--CSSCEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHc--CCcceEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 5578888887653 5666777776 8999999988777666555 24678899999875311 114689
Q ss_pred EEEeccchh
Q 025475 118 AVIDKGTLD 126 (252)
Q Consensus 118 ~v~~~~~l~ 126 (252)
+++.+....
T Consensus 106 ~lvnnAg~~ 114 (277)
T 3gvc_A 106 KLVANAGVV 114 (277)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 999876543
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=91.01 E-value=0.26 Score=40.47 Aligned_cols=88 Identities=20% Similarity=0.283 Sum_probs=58.2
Q ss_pred CCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
++++.+||-.|+| .|..+..+++. |. +|++++ +++-.+.+++.-. -.++. | .... ...+|+|+..-.
T Consensus 140 ~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~-~~~~~~~~~~lGa----~~v~~-d---~~~v-~~g~Dvv~d~~g 208 (315)
T 3goh_A 140 LTKQREVLIVGFGAVNNLLTQMLNNAGY-VVDLVS-ASLSQALAAKRGV----RHLYR-E---PSQV-TQKYFAIFDAVN 208 (315)
T ss_dssp CCSCCEEEEECCSHHHHHHHHHHHHHTC-EEEEEC-SSCCHHHHHHHTE----EEEES-S---GGGC-CSCEEEEECC--
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCC-EEEEEE-ChhhHHHHHHcCC----CEEEc-C---HHHh-CCCccEEEECCC
Confidence 5678899999996 47788888776 66 999999 8888888876422 12221 3 2112 457999985321
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. ..+..+.++|+++|.++...
T Consensus 209 ------------~--~~~~~~~~~l~~~G~~v~~g 229 (315)
T 3goh_A 209 ------------S--QNAAALVPSLKANGHIICIQ 229 (315)
T ss_dssp -------------------TTGGGEEEEEEEEEEC
T ss_pred ------------c--hhHHHHHHHhcCCCEEEEEe
Confidence 0 11255678999999988764
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=90.98 E-value=0.12 Score=42.83 Aligned_cols=62 Identities=19% Similarity=0.226 Sum_probs=41.9
Q ss_pred CeEE-EccccCC-CCCCCCCeeEEEeccchhhhc--CC--CCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 98 LKYL-QMDVRDM-SFFEDESFDAVIDKGTLDSLM--CG--TNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 98 v~~~-~~d~~~~-~~~~~~~~D~v~~~~~l~~~~--~~--~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..++ ++|..+. ..++++++|+|++..++.--. +. ..-.......+.+++++|++||.+++..
T Consensus 39 ~~l~i~gD~l~~L~~l~~~svDlI~tDPPY~~~~d~~~~~~~~~~~~~~~l~~~~rvLk~~G~i~i~~ 106 (319)
T 1eg2_A 39 RHVYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 106 (319)
T ss_dssp EEEEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ceEEECCcHHHHHHhCccCCcCEEEECCCCCCCCCCccCHHHHHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence 4677 8888653 225667899999998864210 00 0001356778889999999999998865
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=1.2 Score=37.25 Aligned_cols=93 Identities=11% Similarity=0.032 Sum_probs=59.3
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------C-CCCCCe
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------F-FEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~-~~~~~~ 116 (252)
+.++.+||-.|+ |.|..+..++.. |. +++++|.+++.++.+++.-. -..+ |..+.. . .....+
T Consensus 160 ~~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g~----~~~~--~~~~~~~~~~~~~~~~~~~~ 232 (354)
T 2j8z_A 160 VQAGDYVLIHAGLSGVGTAAIQLTRMAGA-IPLVTAGSQKKLQMAEKLGA----AAGF--NYKKEDFSEATLKFTKGAGV 232 (354)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTC----SEEE--ETTTSCHHHHHHHHTTTSCE
T ss_pred CCCCCEEEEECCccHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHcCC----cEEE--ecCChHHHHHHHHHhcCCCc
Confidence 567789999984 457766666655 55 89999999988888754421 1122 222111 0 122469
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+|+.+..- . .+..+.++|+++|.+++...
T Consensus 233 d~vi~~~G~----------~----~~~~~~~~l~~~G~iv~~G~ 262 (354)
T 2j8z_A 233 NLILDCIGG----------S----YWEKNVNCLALDGRWVLYGL 262 (354)
T ss_dssp EEEEESSCG----------G----GHHHHHHHEEEEEEEEECCC
T ss_pred eEEEECCCc----------h----HHHHHHHhccCCCEEEEEec
Confidence 999864321 1 35667788999999887653
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=90.86 E-value=3 Score=33.14 Aligned_cols=63 Identities=10% Similarity=0.171 Sum_probs=44.6
Q ss_pred CcEEEEcccCcHhHHHHHH----cCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 51 SRVLMVGCGNALMSEDMVK----DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~----~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
++||-.|+ |.++..+++ .|+ +|++++.++........ .+++++.+|+.++. -..+|+|+....
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~-~V~~~~r~~~~~~~~~~-----~~~~~~~~D~~d~~---~~~~d~vi~~a~ 72 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGW-RIIGTSRNPDQMEAIRA-----SGAEPLLWPGEEPS---LDGVTHLLISTA 72 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTC-EEEEEESCGGGHHHHHH-----TTEEEEESSSSCCC---CTTCCEEEECCC
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCC-EEEEEEcChhhhhhHhh-----CCCeEEEecccccc---cCCCCEEEECCC
Confidence 58999995 666655554 355 89999998765443332 35789999998864 346899987554
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=90.85 E-value=1.3 Score=37.95 Aligned_cols=94 Identities=16% Similarity=0.202 Sum_probs=59.5
Q ss_pred CCcEEEEcccC-cHh-HHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEeccc
Q 025475 50 SSRVLMVGCGN-ALM-SEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDKGT 124 (252)
Q Consensus 50 ~~~vLD~G~G~-G~~-~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~~~ 124 (252)
..+|+-+|+|. |.. +..|...|. .|+++|.+++.++.++.. .+.++.+|..+... ..-..+|+|++...
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~-~vvvId~d~~~v~~~~~~-----g~~vi~GDat~~~~L~~agi~~A~~viv~~~ 77 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGV-KMVVLDHDPDHIETLRKF-----GMKVFYGDATRMDLLESAGAAKAEVLINAID 77 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTC-CEEEEECCHHHHHHHHHT-----TCCCEESCTTCHHHHHHTTTTTCSEEEECCS
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHhC-----CCeEEEcCCCCHHHHHhcCCCccCEEEECCC
Confidence 45799999874 443 333444465 899999999999888753 46788999887531 22356888886321
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+ ......+-...+.+.|+..+++..
T Consensus 78 ---------~-~~~n~~i~~~ar~~~p~~~Iiara 102 (413)
T 3l9w_A 78 ---------D-PQTNLQLTEMVKEHFPHLQIIARA 102 (413)
T ss_dssp ---------S-HHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred ---------C-hHHHHHHHHHHHHhCCCCeEEEEE
Confidence 1 222333344445567777776644
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.77 E-value=3.2 Score=33.37 Aligned_cols=76 Identities=12% Similarity=0.159 Sum_probs=52.6
Q ss_pred CCCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCC-CC---C------CC
Q 025475 49 TSSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDM-SF---F------ED 113 (252)
Q Consensus 49 ~~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~-~~---~------~~ 113 (252)
.+.+||-.|++.| .++..+++.|. +|++++.++...+.+...+... .++.++.+|+.+. .. + ..
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~~v~~~~~~~~~~~ 89 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGI-MVVLTCRDVTKGHEAVEKLKNSNHENVVFHQLDVTDPIATMSSLADFIKTHF 89 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCSEEEEECCTTSCHHHHHHHHHHHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCCceEEEEccCCCcHHHHHHHHHHHHHhC
Confidence 3557888888765 25666667776 8999999988776665555332 3688999999886 31 0 12
Q ss_pred CCeeEEEeccch
Q 025475 114 ESFDAVIDKGTL 125 (252)
Q Consensus 114 ~~~D~v~~~~~l 125 (252)
+..|+++.+...
T Consensus 90 g~iD~lv~nAg~ 101 (311)
T 3o26_A 90 GKLDILVNNAGV 101 (311)
T ss_dssp SSCCEEEECCCC
T ss_pred CCCCEEEECCcc
Confidence 478999987654
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=90.74 E-value=1.3 Score=36.37 Aligned_cols=90 Identities=16% Similarity=0.249 Sum_probs=59.8
Q ss_pred cEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-cccCCCCCCCCCeeEEEeccchhh
Q 025475 52 RVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 52 ~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
+||-.|+ |.|..+..+++. |. +|++++.+++-.+.+++.-. -.++.. +.........+.+|+|+..
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga-~Vi~~~~~~~~~~~~~~lGa----~~vi~~~~~~~~~~~~~~~~d~v~d~----- 218 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGY-QVAAVSGRESTHGYLKSLGA----NRILSRDEFAESRPLEKQLWAGAIDT----- 218 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCGGGHHHHHHHTC----SEEEEGGGSSCCCSSCCCCEEEEEES-----
T ss_pred eEEEECCCcHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCC----CEEEecCCHHHHHhhcCCCccEEEEC-----
Confidence 5999997 368888888876 55 99999999988888876421 122211 1111111334579998853
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. .. ..++.+.++|+++|.+++...
T Consensus 219 ~-------g~--~~~~~~~~~l~~~G~iv~~G~ 242 (324)
T 3nx4_A 219 V-------GD--KVLAKVLAQMNYGGCVAACGL 242 (324)
T ss_dssp S-------CH--HHHHHHHHTEEEEEEEEECCC
T ss_pred C-------Cc--HHHHHHHHHHhcCCEEEEEec
Confidence 1 11 268888899999999887653
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=90.56 E-value=1.3 Score=37.13 Aligned_cols=89 Identities=21% Similarity=0.338 Sum_probs=56.9
Q ss_pred CCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCH---HHHHHHHHhhcCCCCCeEEEccccC-CCC-C--CCCCeeEEE
Q 025475 50 SSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISS---VAIDMMKMKYEEIPQLKYLQMDVRD-MSF-F--EDESFDAVI 120 (252)
Q Consensus 50 ~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~---~~i~~a~~~~~~~~~v~~~~~d~~~-~~~-~--~~~~~D~v~ 120 (252)
+.+||-+|+| .|..+..++.. |. +|+++|.++ +-.+.+++.- ...+ | .+ +.. . ..+.+|+|+
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~~~~g-----a~~v--~-~~~~~~~~~~~~~~~d~vi 251 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGL-EVWMANRREPTEVEQTVIEETK-----TNYY--N-SSNGYDKLKDSVGKFDVII 251 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTC-EEEEEESSCCCHHHHHHHHHHT-----CEEE--E-CTTCSHHHHHHHCCEEEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCccchHHHHHHHHhC-----Ccee--c-hHHHHHHHHHhCCCCCEEE
Confidence 8899999985 36666666554 66 999999987 6667776541 2222 3 22 110 0 014699998
Q ss_pred eccchhhhcCCCCChhhHHHHH-HHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQML-GEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l-~~~~~~L~~gG~l~i~~~ 160 (252)
..-... ..+ +.+.++|+++|.+++...
T Consensus 252 d~~g~~-------------~~~~~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 252 DATGAD-------------VNILGNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp ECCCCC-------------THHHHHHGGGEEEEEEEEECSC
T ss_pred ECCCCh-------------HHHHHHHHHHHhcCCEEEEEec
Confidence 643211 135 778899999999887653
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=90.44 E-value=0.4 Score=39.93 Aligned_cols=93 Identities=16% Similarity=0.228 Sum_probs=61.2
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----C-CCCCCeeE
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----F-FEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~~~D~ 118 (252)
+.++.+||-.|+ |.|..+..+++. |. ++++++.+++-.+.+++.-. ..++..+ .+.. . .....+|+
T Consensus 157 ~~~g~~VlV~Gasg~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~ga----~~v~~~~-~~~~~~v~~~~~~~g~Dv 230 (342)
T 4eye_A 157 LRAGETVLVLGAAGGIGTAAIQIAKGMGA-KVIAVVNRTAATEFVKSVGA----DIVLPLE-EGWAKAVREATGGAGVDM 230 (342)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHTC----SEEEESS-TTHHHHHHHHTTTSCEEE
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCC----cEEecCc-hhHHHHHHHHhCCCCceE
Confidence 567889999997 357787777776 55 99999999888887776421 1222222 1111 0 12236999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+..-.- ..+..+.+.|+++|.+++..
T Consensus 231 vid~~g~--------------~~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 231 VVDPIGG--------------PAFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp EEESCC----------------CHHHHHHTEEEEEEEEEC-
T ss_pred EEECCch--------------hHHHHHHHhhcCCCEEEEEE
Confidence 9964221 14667888999999988765
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=90.30 E-value=1 Score=35.75 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=53.0
Q ss_pred CCCcEEEEcc----cCcH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCC---------C
Q 025475 49 TSSRVLMVGC----GNAL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFF---------E 112 (252)
Q Consensus 49 ~~~~vLD~G~----G~G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~---------~ 112 (252)
.++++|--|+ |.|. .+..|++.|. +|+.++.++...+.+.+.+.. ..++.++++|+.+.... .
T Consensus 5 ~gK~alVTGaa~~~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~ 83 (256)
T 4fs3_A 5 ENKTYVIMGIANKRSIAFGVAKVLDQLGA-KLVFTYRKERSRKELEKLLEQLNQPEAHLYQIDVQSDEEVINGFEQIGKD 83 (256)
T ss_dssp TTCEEEEECCCSTTCHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHGGGTCSSCEEEECCTTCHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCchHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcEEEEEccCCCHHHHHHHHHHHHHH
Confidence 3668888885 3443 6677778886 899999998877777666643 23688899999875311 1
Q ss_pred CCCeeEEEeccc
Q 025475 113 DESFDAVIDKGT 124 (252)
Q Consensus 113 ~~~~D~v~~~~~ 124 (252)
-+..|+++.+..
T Consensus 84 ~G~iD~lvnnAg 95 (256)
T 4fs3_A 84 VGNIDGVYHSIA 95 (256)
T ss_dssp HCCCSEEEECCC
T ss_pred hCCCCEEEeccc
Confidence 257899987754
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.28 E-value=1 Score=35.75 Aligned_cols=74 Identities=18% Similarity=0.236 Sum_probs=48.8
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCC---------CC
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFE---------DE 114 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~---------~~ 114 (252)
+.++|-.|++.| .++..+++.|. +|++++.++...+.....+.. ..++.++.+|+.+..... .+
T Consensus 7 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g 85 (267)
T 2gdz_A 7 GKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 85 (267)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCcHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhcCCCceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 457888887655 25556666676 899999998766555444432 125778889988753110 13
Q ss_pred CeeEEEeccc
Q 025475 115 SFDAVIDKGT 124 (252)
Q Consensus 115 ~~D~v~~~~~ 124 (252)
..|+++.+..
T Consensus 86 ~id~lv~~Ag 95 (267)
T 2gdz_A 86 RLDILVNNAG 95 (267)
T ss_dssp CCCEEEECCC
T ss_pred CCCEEEECCC
Confidence 5899998754
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=90.08 E-value=1.5 Score=36.05 Aligned_cols=94 Identities=12% Similarity=0.092 Sum_probs=61.0
Q ss_pred hCCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------C-CCCCC
Q 025475 46 YIPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------F-FEDES 115 (252)
Q Consensus 46 ~~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~-~~~~~ 115 (252)
.+.++.+||-.|+ |.|..+..++.. |. +++++|.+++.++.+++.-. -..+ |..+.. . .....
T Consensus 142 ~~~~g~~vlV~Ga~ggiG~~~~~~a~~~G~-~Vi~~~~~~~~~~~~~~~g~----~~~~--d~~~~~~~~~i~~~~~~~~ 214 (333)
T 1wly_A 142 KVKPGDYVLIHAAAGGMGHIMVPWARHLGA-TVIGTVSTEEKAETARKLGC----HHTI--NYSTQDFAEVVREITGGKG 214 (333)
T ss_dssp CCCTTCEEEETTTTSTTHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTC----SEEE--ETTTSCHHHHHHHHHTTCC
T ss_pred CCCCCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC----CEEE--ECCCHHHHHHHHHHhCCCC
Confidence 3567789999995 567777766665 55 89999999988887765311 1122 322211 0 11236
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+|+|+.+-.- ..++.+.++|+++|.+++...
T Consensus 215 ~d~vi~~~g~--------------~~~~~~~~~l~~~G~iv~~g~ 245 (333)
T 1wly_A 215 VDVVYDSIGK--------------DTLQKSLDCLRPRGMCAAYGH 245 (333)
T ss_dssp EEEEEECSCT--------------TTHHHHHHTEEEEEEEEECCC
T ss_pred CeEEEECCcH--------------HHHHHHHHhhccCCEEEEEec
Confidence 9999864221 346778889999999877653
|
| >3edm_A Short chain dehydrogenase; structural genomics, oxidoreductase, PSI-2, P structure initiative; 2.30A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.07 E-value=1 Score=35.75 Aligned_cols=110 Identities=8% Similarity=0.070 Sum_probs=65.0
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEE-eCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNI-DISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~v-D~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~ 114 (252)
.++++|-.|++.|. ++..+++.|. +|+.+ +.++...+.....+.. ..++.++.+|+.+.... .-+
T Consensus 7 ~~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 85 (259)
T 3edm_A 7 TNRTIVVAGAGRDIGRACAIRFAQEGA-NVVLTYNGAAEGAATAVAEIEKLGRSALAIKADLTNAAEVEAAISAAADKFG 85 (259)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEECSSCHHHHHHHHHHHTTTSCCEEEECCTTCHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHHHHHHhC
Confidence 35688888987653 5666677776 77777 6666655555544433 34788999999875311 114
Q ss_pred CeeEEEeccchh-hh-cCCCCChhhHH-----------HHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLD-SL-MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~-~~-~~~~~~~~~~~-----------~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|+++.+.... .. .....+.++.. .+++.+...++++|.++...
T Consensus 86 ~id~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 143 (259)
T 3edm_A 86 EIHGLVHVAGGLIARKTIAEMDEAFWHQVLDVNLTSLFLTAKTALPKMAKGGAIVTFS 143 (259)
T ss_dssp SEEEEEECCCCCCCCCCTTTCCHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCEEEECCCccCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEEc
Confidence 789999875432 11 11112333322 33445566666677776654
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=90.04 E-value=0.44 Score=39.92 Aligned_cols=96 Identities=24% Similarity=0.249 Sum_probs=58.5
Q ss_pred CC-CCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-cccCCCCCCCCCeeEEEec
Q 025475 47 IP-TSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~-~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-d~~~~~~~~~~~~D~v~~~ 122 (252)
+. ++.+||-+|+| .|..+..+++. |. +|+++|.+++-++.+++.+. .-.++.. +........ +.+|+|+..
T Consensus 177 ~~~~g~~VlV~GaG~vG~~a~qlak~~Ga-~Vi~~~~~~~~~~~~~~~lG---a~~vi~~~~~~~~~~~~-~g~D~vid~ 251 (357)
T 2cf5_A 177 LKQPGLRGGILGLGGVGHMGVKIAKAMGH-HVTVISSSNKKREEALQDLG---ADDYVIGSDQAKMSELA-DSLDYVIDT 251 (357)
T ss_dssp TTSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSTTHHHHHHTTSC---CSCEEETTCHHHHHHST-TTEEEEEEC
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCChHHHHHHHHHcC---CceeeccccHHHHHHhc-CCCCEEEEC
Confidence 55 78899999986 37777777665 65 89999999887777763331 1122211 100011011 369999864
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
-.-. ..++.+.++|+++|.++....
T Consensus 252 ~g~~-------------~~~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 252 VPVH-------------HALEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp CCSC-------------CCSHHHHTTEEEEEEEEECSC
T ss_pred CCCh-------------HHHHHHHHHhccCCEEEEeCC
Confidence 2211 124556688999999887543
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=90.00 E-value=1.3 Score=36.78 Aligned_cols=91 Identities=18% Similarity=0.246 Sum_probs=59.4
Q ss_pred CCCcEEEE-ccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC----CCCCCCCeeEEEe
Q 025475 49 TSSRVLMV-GCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM----SFFEDESFDAVID 121 (252)
Q Consensus 49 ~~~~vLD~-G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~----~~~~~~~~D~v~~ 121 (252)
++.+||-. |+| .|..+..+++. |. +|++++.+++-++.+++.-.. .++..+ .+. .......+|+|+.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga-~Vi~~~~~~~~~~~~~~lGa~----~vi~~~-~~~~~~~~~~~~~g~Dvv~d 223 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGL-RVITTASRNETIEWTKKMGAD----IVLNHK-ESLLNQFKTQGIELVDYVFC 223 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEECCSHHHHHHHHHHTCS----EEECTT-SCHHHHHHHHTCCCEEEEEE
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCCc----EEEECC-ccHHHHHHHhCCCCccEEEE
Confidence 67799999 454 57777777776 55 999999999988888874221 222111 011 0012346999995
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
.. .-...+..+.++|+++|.++..
T Consensus 224 ~~-------------g~~~~~~~~~~~l~~~G~iv~~ 247 (346)
T 3fbg_A 224 TF-------------NTDMYYDDMIQLVKPRGHIATI 247 (346)
T ss_dssp SS-------------CHHHHHHHHHHHEEEEEEEEES
T ss_pred CC-------------CchHHHHHHHHHhccCCEEEEE
Confidence 32 2234567788899999998754
|
| >4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A* | Back alignment and structure |
|---|
Probab=89.98 E-value=1.3 Score=41.31 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=40.6
Q ss_pred CcEEEEcccCcHhHHHHHHcC------CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccc
Q 025475 51 SRVLMVGCGNALMSEDMVKDG------YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV 105 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~------~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~ 105 (252)
.+|+|+-||.|.++.-+.+.| +..+.++|+++.+++.-+.++. +..+.+.|+
T Consensus 213 ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~Nhp---~~~~~~~di 270 (784)
T 4ft4_B 213 ATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYNHP---QTEVRNEKA 270 (784)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHHCT---TSEEEESCH
T ss_pred CeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHHCC---CCceecCcH
Confidence 489999999999999887765 4468899999999999888863 334444443
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=89.97 E-value=0.16 Score=40.66 Aligned_cols=62 Identities=15% Similarity=0.124 Sum_probs=40.4
Q ss_pred CeEEEccccCC-CCCCCCCeeEEEeccchhhhcCCCC---Ch----hhHHHHHHHHHHcccCCcEEEEEE
Q 025475 98 LKYLQMDVRDM-SFFEDESFDAVIDKGTLDSLMCGTN---AP----ISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 98 v~~~~~d~~~~-~~~~~~~~D~v~~~~~l~~~~~~~~---~~----~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+++++|..+. ..++++++|+|++..++..-...-. +. ......+++++++|++||.+++..
T Consensus 5 ~~l~~gD~~~~l~~l~~~~vdlI~~DPPY~~~~~~~d~~~~~~~y~~~~~~~l~~~~~~Lk~~g~i~v~~ 74 (260)
T 1g60_A 5 NKIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (260)
T ss_dssp SSEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CeEEechHHHHHHhccccccCEEEECCCCCCCcccccccCCHHHHHHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 46778887543 1245678999999987642100000 00 245677888999999999998864
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=89.93 E-value=0.35 Score=40.22 Aligned_cols=94 Identities=16% Similarity=0.249 Sum_probs=58.9
Q ss_pred CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----CCCCCCeeEEEec
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~~D~v~~~ 122 (252)
++.+||-+|+|. |..+..+++. |..+|+++|.+++-++.+++. .. .++..+-.++. ......+|+|+..
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~l-a~----~v~~~~~~~~~~~~~~~~~~g~D~vid~ 238 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRLAFARPY-AD----RLVNPLEEDLLEVVRRVTGSGVEVLLEF 238 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHGGGTTT-CS----EEECTTTSCHHHHHHHHHSSCEEEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHh-HH----hccCcCccCHHHHHHHhcCCCCCEEEEC
Confidence 778999999863 7777777765 544899999998877666543 21 12211101110 0012369999854
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
-. -...++.+.++|+++|.+++...
T Consensus 239 ~g-------------~~~~~~~~~~~l~~~G~iv~~g~ 263 (343)
T 2dq4_A 239 SG-------------NEAAIHQGLMALIPGGEARILGI 263 (343)
T ss_dssp SC-------------CHHHHHHHHHHEEEEEEEEECCC
T ss_pred CC-------------CHHHHHHHHHHHhcCCEEEEEec
Confidence 21 12356778889999999887543
|
| >1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33; 1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A* 3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A* | Back alignment and structure |
|---|
Probab=89.30 E-value=1.4 Score=34.83 Aligned_cols=110 Identities=15% Similarity=0.206 Sum_probs=63.6
Q ss_pred CCCcEEEEcccCc---HhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCCC---------CC
Q 025475 49 TSSRVLMVGCGNA---LMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFE---------DE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G---~~~~~l~~-~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~~---------~~ 114 (252)
.+.+||-.|++.| .++..|++ .|. +|++++.++...+.....+.. ..++.++.+|+.+..... .+
T Consensus 3 ~~k~vlITGasggIG~~~a~~L~~~~g~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 81 (276)
T 1wma_A 3 GIHVALVTGGNKGIGLAIVRDLCRLFSG-DVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYG 81 (276)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSS-EEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHhcCC-eEEEEeCChHHHHHHHHHHHhcCCeeEEEECCCCCHHHHHHHHHHHHHhcC
Confidence 3557887776544 24555566 666 899999998766655544432 246889999998753110 13
Q ss_pred CeeEEEeccchhhhcCCCCC-hhhH-----------HHHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSLMCGTNA-PISA-----------SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~-~~~~-----------~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|+|+.+............ .++. ..+++.+.+.++++|.++.+.
T Consensus 82 ~id~li~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~~s 138 (276)
T 1wma_A 82 GLDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 138 (276)
T ss_dssp SEEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred CCCEEEECCcccccCCCccccHHHHHhhhheeeeeHHHHHHHHHHhhCCCCEEEEEC
Confidence 68999876543221000011 1222 234455566666677766654
|
| >3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A* | Back alignment and structure |
|---|
Probab=89.23 E-value=1.1 Score=44.29 Aligned_cols=76 Identities=14% Similarity=0.152 Sum_probs=56.6
Q ss_pred CCcEEEEcccCcHhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC------------C--CCC-C
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM------------S--FFE-D 113 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~------------~--~~~-~ 113 (252)
..+++|+-||.|.++.-+...|. ..+.++|+++.+++..+.++. ...++..|+.++ . .++ .
T Consensus 851 ~l~viDLFsG~GGlslGfe~AG~~~vv~avEid~~A~~ty~~N~p---~~~~~~~DI~~l~~~~~~gdi~~~~~~~lp~~ 927 (1330)
T 3av4_A 851 KLRTLDVFSGCGGLSEGFHQAGISETLWAIEMWDPAAQAFRLNNP---GTTVFTEDCNVLLKLVMAGEVTNSLGQRLPQK 927 (1330)
T ss_dssp CEEEEEETCTTSHHHHHHHHTTSEEEEEEECCSHHHHHHHHHHCT---TSEEECSCHHHHHHHHTTTCSBCSSCCBCCCT
T ss_pred CceEEecccCccHHHHHHHHCCCCceEEEEECCHHHHHHHHHhCC---CCcEeeccHHHHhHhhhccchhhhhhhhcccc
Confidence 34899999999999999999885 468899999999998888863 445555554321 0 011 2
Q ss_pred CCeeEEEeccchhhh
Q 025475 114 ESFDAVIDKGTLDSL 128 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~ 128 (252)
+.+|+|+.......+
T Consensus 928 ~~vDvl~GGpPCQ~F 942 (1330)
T 3av4_A 928 GDVEMLCGGPPCQGF 942 (1330)
T ss_dssp TTCSEEEECCCCTTT
T ss_pred CccceEEecCCCccc
Confidence 468999998877754
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=89.19 E-value=0.89 Score=38.16 Aligned_cols=94 Identities=21% Similarity=0.260 Sum_probs=57.9
Q ss_pred CC-CCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC---CCCCCCCCeeEEE
Q 025475 47 IP-TSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD---MSFFEDESFDAVI 120 (252)
Q Consensus 47 ~~-~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~---~~~~~~~~~D~v~ 120 (252)
+. ++.+||-+|+|. |..+..+++. |. +|++++.+++-++.+++.+. ...++ |..+ ..... +.+|+|+
T Consensus 184 ~~~~g~~VlV~GaG~vG~~~~q~a~~~Ga-~Vi~~~~~~~~~~~~~~~lG---a~~v~--~~~~~~~~~~~~-~~~D~vi 256 (366)
T 1yqd_A 184 LDEPGKHIGIVGLGGLGHVAVKFAKAFGS-KVTVISTSPSKKEEALKNFG---ADSFL--VSRDQEQMQAAA-GTLDGII 256 (366)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGHHHHHHTSC---CSEEE--ETTCHHHHHHTT-TCEEEEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhcC---CceEE--eccCHHHHHHhh-CCCCEEE
Confidence 45 778999999863 6777777665 55 89999999887777664431 11222 1111 11011 3699999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..-... . .++.+.++|+++|.++....
T Consensus 257 d~~g~~---------~----~~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 257 DTVSAV---------H----PLLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp ECCSSC---------C----CSHHHHHHEEEEEEEEECCC
T ss_pred ECCCcH---------H----HHHHHHHHHhcCCEEEEEcc
Confidence 643211 1 23456678899999877543
|
| >3ijr_A Oxidoreductase, short chain dehydrogenase/reducta; structural genomics, infectious D center for structural genomics of infectious diseases; HET: NAD; 2.05A {Bacillus anthracis str} PDB: 3i3o_A* | Back alignment and structure |
|---|
Probab=89.05 E-value=2 Score=34.72 Aligned_cols=110 Identities=15% Similarity=0.110 Sum_probs=65.1
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHH-HHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSV-AIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~-~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~ 114 (252)
.++++|-.|++.|. ++..+++.|. +|+.++.+.. ..+...+.... ..++.++.+|+.+.... ..+
T Consensus 46 ~gk~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 124 (291)
T 3ijr_A 46 KGKNVLITGGDSGIGRAVSIAFAKEGA-NIAIAYLDEEGDANETKQYVEKEGVKCVLLPGDLSDEQHCKDIVQETVRQLG 124 (291)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHTTTCCEEEEESCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 35688989987653 5666677776 8999998754 33434333332 24788899999875311 114
Q ss_pred CeeEEEeccchhhh--cCCCCChhhH-----------HHHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSL--MCGTNAPISA-----------SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~--~~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|+++.+...... .....+.++. ..+++.+.+.|+++|.++.+.
T Consensus 125 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~iv~is 182 (291)
T 3ijr_A 125 SLNILVNNVAQQYPQQGLEYITAEQLEKTFRINIFSYFHVTKAALSHLKQGDVIINTA 182 (291)
T ss_dssp SCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHHTTCCTTCEEEEEC
T ss_pred CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhhCCEEEEEe
Confidence 68999977442211 0000122333 234456667777888877654
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=88.87 E-value=2.7 Score=33.08 Aligned_cols=73 Identities=19% Similarity=0.310 Sum_probs=51.3
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
++++|-.|++.| .++..+++.|. +|+++|.+++..+.....+. .++.++.+|+.+.... ..+..|
T Consensus 8 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~D~~~~~~v~~~~~~~~~~~g~id 84 (259)
T 4e6p_A 8 GKSALITGSARGIGRAFAEAYVREGA-TVAIADIDIERARQAAAEIG--PAAYAVQMDVTRQDSIDAAIAATVEHAGGLD 84 (259)
T ss_dssp TCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHHHSSSCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhC--CCceEEEeeCCCHHHHHHHHHHHHHHcCCCC
Confidence 557888888665 35666777776 89999999887766655542 3578889999875311 124789
Q ss_pred EEEeccch
Q 025475 118 AVIDKGTL 125 (252)
Q Consensus 118 ~v~~~~~l 125 (252)
+++.+...
T Consensus 85 ~lv~~Ag~ 92 (259)
T 4e6p_A 85 ILVNNAAL 92 (259)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 99987654
|
| >4da9_A Short-chain dehydrogenase/reductase; structural genomics, protein structure initiative, PSI-biology; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.76 E-value=2.6 Score=33.80 Aligned_cols=76 Identities=13% Similarity=0.311 Sum_probs=50.8
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeC-CHHHHHHHHHhhcC-CCCCeEEEccccCCCCCC---------CC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDI-SSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFE---------DE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~-s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~~---------~~ 114 (252)
.+.++|-.|++.|. ++..+++.|. +|+.++. +++..+.....+.. ..++.++.+|+.+..... -+
T Consensus 28 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 106 (280)
T 4da9_A 28 ARPVAIVTGGRRGIGLGIARALAASGF-DIAITGIGDAEGVAPVIAELSGLGARVIFLRADLADLSSHQATVDAVVAEFG 106 (280)
T ss_dssp CCCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCCHHHHHHHHHHHHHTTCCEEEEECCTTSGGGHHHHHHHHHHHHS
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCC-eEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 35578888887653 5666677776 8999996 66655555444432 347889999998864211 14
Q ss_pred CeeEEEeccch
Q 025475 115 SFDAVIDKGTL 125 (252)
Q Consensus 115 ~~D~v~~~~~l 125 (252)
..|+++.+...
T Consensus 107 ~iD~lvnnAg~ 117 (280)
T 4da9_A 107 RIDCLVNNAGI 117 (280)
T ss_dssp CCCEEEEECC-
T ss_pred CCCEEEECCCc
Confidence 68999987654
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=88.72 E-value=6 Score=34.39 Aligned_cols=92 Identities=18% Similarity=0.321 Sum_probs=57.6
Q ss_pred CcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-------------C--C-C-CCeEEEccccCCCCC
Q 025475 51 SRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-------------E--I-P-QLKYLQMDVRDMSFF 111 (252)
Q Consensus 51 ~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~-------------~--~-~-~v~~~~~d~~~~~~~ 111 (252)
.+|.-+|+|. | .++..++..|. +|+++|.+++.++.++.... . . . ...+ ..|... .
T Consensus 38 ~kV~VIGaG~MG~~iA~~la~~G~-~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i-~~~~~~---~ 112 (463)
T 1zcj_A 38 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRF-SSSTKE---L 112 (463)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEE-ESCGGG---G
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhh-cCCHHH---H
Confidence 3799999996 4 45666666676 89999999988877765321 0 0 0 1122 233311 1
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
...|+|+..-. + +..-...++.++...++++.+++.
T Consensus 113 --~~aDlVIeaVp-e-------~~~~k~~v~~~l~~~~~~~~ii~s 148 (463)
T 1zcj_A 113 --STVDLVVEAVF-E-------DMNLKKKVFAELSALCKPGAFLCT 148 (463)
T ss_dssp --TTCSEEEECCC-S-------CHHHHHHHHHHHHHHSCTTCEEEE
T ss_pred --CCCCEEEEcCC-C-------CHHHHHHHHHHHHhhCCCCeEEEe
Confidence 35899986432 1 224457788888888888776654
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=88.71 E-value=3.2 Score=28.80 Aligned_cols=68 Identities=19% Similarity=0.245 Sum_probs=41.7
Q ss_pred CCcEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEec
Q 025475 50 SSRVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDK 122 (252)
Q Consensus 50 ~~~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~ 122 (252)
+++|+-+|+|. |. ++..+.+.|. +++++|.+++.++..+... .+.++.+|..+... ..-..+|+|+..
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~~~----~~~~~~~d~~~~~~l~~~~~~~~d~vi~~ 76 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLEDAGIEDADMYIAV 76 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHhc----CcEEEEcCCCCHHHHHHcCcccCCEEEEe
Confidence 45788888863 33 3344445565 8999999998776665432 34566676654310 112468998865
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=88.65 E-value=0.48 Score=38.61 Aligned_cols=92 Identities=12% Similarity=0.082 Sum_probs=58.9
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccc-cCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDV-RDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~-~~~~~~~~~~~D~v~~~ 122 (252)
+.++.+||-.|+ |.|..+..+++. |. ++++++.+++..+.+++.- .-.++..+- .+..... ..+|+|+.
T Consensus 123 ~~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~~g----a~~~~~~~~~~~~~~~~-~~~d~vid- 195 (302)
T 1iz0_A 123 ARPGEKVLVQAAAGALGTAAVQVARAMGL-RVLAAASRPEKLALPLALG----AEEAATYAEVPERAKAW-GGLDLVLE- 195 (302)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHTTC-EEEEEESSGGGSHHHHHTT----CSEEEEGGGHHHHHHHT-TSEEEEEE-
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHhcC----CCEEEECCcchhHHHHh-cCceEEEE-
Confidence 677889999997 357777777765 55 8999999988777776531 112222111 1111001 46999985
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
-.- ..++.+.++|+++|.++...
T Consensus 196 ~g~--------------~~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 196 VRG--------------KEVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp CSC--------------TTHHHHHTTEEEEEEEEEC-
T ss_pred CCH--------------HHHHHHHHhhccCCEEEEEe
Confidence 321 24677788999999987654
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.52 E-value=3.4 Score=34.82 Aligned_cols=96 Identities=13% Similarity=0.035 Sum_probs=62.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC----CCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP----QLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~----~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.+.+||.++.+.|.++..++.. .++.+.=|--.....+.+++... .+++. +..+ .....+|+|+...
T Consensus 38 ~~~~~~~~~d~~gal~~~~~~~---~~~~~~ds~~~~~~~~~n~~~~~~~~~~~~~~--~~~~---~~~~~~~~v~~~l- 108 (375)
T 4dcm_A 38 IRGPVLILNDAFGALSCALAEH---KPYSIGDSYISELATRENLRLNGIDESSVKFL--DSTA---DYPQQPGVVLIKV- 108 (375)
T ss_dssp CCSCEEEECCSSSHHHHHTGGG---CCEEEESCHHHHHHHHHHHHHTTCCGGGSEEE--ETTS---CCCSSCSEEEEEC-
T ss_pred CCCCEEEECCCCCHHHHhhccC---CceEEEhHHHHHHHHHHHHHHcCCCccceEec--cccc---ccccCCCEEEEEc-
Confidence 4568999999999999988754 34555435544445555553321 24432 2222 2335799999543
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++.......+..+...|++|+.+++..-
T Consensus 109 -------pk~~~~l~~~L~~l~~~l~~~~~i~~~g~ 137 (375)
T 4dcm_A 109 -------PKTLALLEQQLRALRKVVTSDTRIIAGAK 137 (375)
T ss_dssp -------CSCHHHHHHHHHHHHTTCCTTSEEEEEEE
T ss_pred -------CCCHHHHHHHHHHHHhhCCCCCEEEEEec
Confidence 34457778889999999999999987664
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=88.45 E-value=1.9 Score=35.82 Aligned_cols=95 Identities=9% Similarity=0.055 Sum_probs=61.3
Q ss_pred hCCCC--CcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------CCCCC
Q 025475 46 YIPTS--SRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDE 114 (252)
Q Consensus 46 ~~~~~--~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~ 114 (252)
.+.++ .+||-.|+ |.|..+..++.. |..+|++++.+++-++.+++.+. .... .|..+.. ....+
T Consensus 155 ~~~~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~~~~~~~g---~~~~--~d~~~~~~~~~~~~~~~~ 229 (357)
T 2zb4_A 155 HITAGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCILLTSELG---FDAA--INYKKDNVAEQLRESCPA 229 (357)
T ss_dssp CCCTTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC---CSEE--EETTTSCHHHHHHHHCTT
T ss_pred CCCCCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcC---CceE--EecCchHHHHHHHHhcCC
Confidence 35677 89999997 356666666664 55489999999887777765331 1112 2322211 01122
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+|+|+.+-. ...++.+.++|+++|.+++..
T Consensus 230 ~~d~vi~~~G--------------~~~~~~~~~~l~~~G~iv~~G 260 (357)
T 2zb4_A 230 GVDVYFDNVG--------------GNISDTVISQMNENSHIILCG 260 (357)
T ss_dssp CEEEEEESCC--------------HHHHHHHHHTEEEEEEEEECC
T ss_pred CCCEEEECCC--------------HHHHHHHHHHhccCcEEEEEC
Confidence 6999986422 145778889999999988754
|
| >4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans} | Back alignment and structure |
|---|
Probab=88.44 E-value=0.82 Score=39.14 Aligned_cols=44 Identities=9% Similarity=-0.165 Sum_probs=37.4
Q ss_pred CcEEEEcccCcHhHHHHHHcC--CCc----EEEEeCCHHHHHHHHHhhcC
Q 025475 51 SRVLMVGCGNALMSEDMVKDG--YED----IVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~--~~~----v~~vD~s~~~i~~a~~~~~~ 94 (252)
.+|+|+.||.|.....+.+.| ... +.++|+++.+++.-+.++..
T Consensus 11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~~ 60 (403)
T 4dkj_A 11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHSK 60 (403)
T ss_dssp EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHCS
T ss_pred ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcCC
Confidence 489999999999999998876 333 78899999999998888754
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=88.42 E-value=2.5 Score=33.43 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=43.9
Q ss_pred CCcEEEEccc--Cc--H-hHHHHHHcCCCcEEEEeCCH---HHHHHHHHhhcCCCCCeEEEccccCCCC---------CC
Q 025475 50 SSRVLMVGCG--NA--L-MSEDMVKDGYEDIVNIDISS---VAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FE 112 (252)
Q Consensus 50 ~~~vLD~G~G--~G--~-~~~~l~~~~~~~v~~vD~s~---~~i~~a~~~~~~~~~v~~~~~d~~~~~~---------~~ 112 (252)
++++|-.|++ .| . ++..+++.|. +|++++.++ ..++...... +...++.+|+.+... -.
T Consensus 9 ~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~---~~~~~~~~D~~~~~~v~~~~~~~~~~ 84 (265)
T 1qsg_A 9 GKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQNDKLKGRVEEFAAQL---GSDIVLQCDVAEDASIDTMFAELGKV 84 (265)
T ss_dssp TCEEEECCCCSTTSHHHHHHHHHHHTTC-EEEEEESSTTTHHHHHHHHHHT---TCCCEEECCTTCHHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEcCcHHHHHHHHHHHHhc---CCcEEEEccCCCHHHHHHHHHHHHHH
Confidence 4578888875 33 2 4455566676 899999886 3333322221 334788899887431 11
Q ss_pred CCCeeEEEeccch
Q 025475 113 DESFDAVIDKGTL 125 (252)
Q Consensus 113 ~~~~D~v~~~~~l 125 (252)
.+..|+++.+...
T Consensus 85 ~g~iD~lv~~Ag~ 97 (265)
T 1qsg_A 85 WPKFDGFVHSIGF 97 (265)
T ss_dssp CSSEEEEEECCCC
T ss_pred cCCCCEEEECCCC
Confidence 2478999987653
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=88.22 E-value=2.6 Score=36.43 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=62.0
Q ss_pred hCCCCCcEEEEcc-c-CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC---------------
Q 025475 46 YIPTSSRVLMVGC-G-NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM--------------- 108 (252)
Q Consensus 46 ~~~~~~~vLD~G~-G-~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~--------------- 108 (252)
.+.++.+||-+|+ | .|..+..+++....++++++.++.-++.+++.-. ..++...-.+.
T Consensus 225 ~~~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~~lGa----~~vi~~~~~d~~~~~~~~~~~~~~~~ 300 (456)
T 3krt_A 225 GMKQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICRAMGA----EAIIDRNAEGYRFWKDENTQDPKEWK 300 (456)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC----CEEEETTTTTCCSEEETTEECHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC----cEEEecCcCcccccccccccchHHHH
Confidence 3567889999997 4 5788888877633389999999988888876422 12221111110
Q ss_pred ------CC-CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 109 ------SF-FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 109 ------~~-~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.. .....+|+|+..-. . ..+..+.++|+++|.+++..
T Consensus 301 ~~~~~i~~~t~g~g~Dvvid~~G------------~--~~~~~~~~~l~~~G~iv~~G 344 (456)
T 3krt_A 301 RFGKRIRELTGGEDIDIVFEHPG------------R--ETFGASVFVTRKGGTITTCA 344 (456)
T ss_dssp HHHHHHHHHHTSCCEEEEEECSC------------H--HHHHHHHHHEEEEEEEEESC
T ss_pred HHHHHHHHHhCCCCCcEEEEcCC------------c--hhHHHHHHHhhCCcEEEEEe
Confidence 00 12247999986321 1 45777888999999988754
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=88.19 E-value=12 Score=32.76 Aligned_cols=94 Identities=18% Similarity=0.207 Sum_probs=60.0
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-------CCC------------CCeEEEccccCCC
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-------EIP------------QLKYLQMDVRDMS 109 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~-------~~~------------~v~~~~~d~~~~~ 109 (252)
.+|.-+|+|. +.++..++..|. +|++.|.+++.++.+.+.+. ..+ +++. ..|...
T Consensus 6 ~kVgVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~-- 81 (483)
T 3mog_A 6 QTVAVIGSGTMGAGIAEVAASHGH-QVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIP-VTDIHA-- 81 (483)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTC-CEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEE-ECCGGG--
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeE-eCCHHH--
Confidence 3688889985 456677777776 89999999999988776421 111 1121 222211
Q ss_pred CCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 110 FFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 110 ~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
-...|+|+..- ..+......+++++...++++..++..+
T Consensus 82 ---~~~aDlVIeAV--------pe~~~vk~~v~~~l~~~~~~~~Ilasnt 120 (483)
T 3mog_A 82 ---LAAADLVIEAA--------SERLEVKKALFAQLAEVCPPQTLLTTNT 120 (483)
T ss_dssp ---GGGCSEEEECC--------CCCHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred ---hcCCCEEEEcC--------CCcHHHHHHHHHHHHHhhccCcEEEecC
Confidence 13579998642 1222456788999999998887664433
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=88.01 E-value=0.81 Score=37.66 Aligned_cols=94 Identities=18% Similarity=0.299 Sum_probs=58.2
Q ss_pred CCCCC-cEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-cc-cC-CCCCCCCCeeEE
Q 025475 47 IPTSS-RVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DV-RD-MSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~-~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-d~-~~-~~~~~~~~~D~v 119 (252)
+.++. +||-.|+ |.|..+..+++. |. ++++++.+++-++.+++.-. -.++.. +. .+ ......+.+|+|
T Consensus 146 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa----~~~i~~~~~~~~~~~~~~~~~~d~v 220 (328)
T 1xa0_A 146 LTPERGPVLVTGATGGVGSLAVSMLAKRGY-TVEASTGKAAEHDYLRVLGA----KEVLAREDVMAERIRPLDKQRWAAA 220 (328)
T ss_dssp CCGGGCCEEESSTTSHHHHHHHHHHHHTTC-CEEEEESCTTCHHHHHHTTC----SEEEECC---------CCSCCEEEE
T ss_pred CCCCCceEEEecCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCC----cEEEecCCcHHHHHHHhcCCcccEE
Confidence 55664 8999997 467888887776 55 89999999877777765321 112211 11 01 111223469999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+..-. . ..+..+.++|+++|.+++..
T Consensus 221 id~~g------------~--~~~~~~~~~l~~~G~~v~~G 246 (328)
T 1xa0_A 221 VDPVG------------G--RTLATVLSRMRYGGAVAVSG 246 (328)
T ss_dssp EECST------------T--TTHHHHHHTEEEEEEEEECS
T ss_pred EECCc------------H--HHHHHHHHhhccCCEEEEEe
Confidence 85421 1 13667788999999988754
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.95 E-value=1.4 Score=36.64 Aligned_cols=95 Identities=13% Similarity=0.151 Sum_probs=60.8
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----CCCCCCeeEE
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~~D~v 119 (252)
+.++.+||-.|+ |.|..+..+++. |. +|+++|.+++-++.+++.-. -.++..+-.+.. ......+|+|
T Consensus 165 ~~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga-~Vi~~~~~~~~~~~~~~lGa----~~~~~~~~~~~~~~~~~~~~~g~Dvv 239 (353)
T 4dup_A 165 LTEGESVLIHGGTSGIGTTAIQLARAFGA-EVYATAGSTGKCEACERLGA----KRGINYRSEDFAAVIKAETGQGVDII 239 (353)
T ss_dssp CCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHHSSCEEEE
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHhcCC----CEEEeCCchHHHHHHHHHhCCCceEE
Confidence 567889999953 357777777766 55 89999999998888876421 122221111110 0113469999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+..-.- ..+..+.+.|+++|.+++...
T Consensus 240 id~~g~--------------~~~~~~~~~l~~~G~iv~~g~ 266 (353)
T 4dup_A 240 LDMIGA--------------AYFERNIASLAKDGCLSIIAF 266 (353)
T ss_dssp EESCCG--------------GGHHHHHHTEEEEEEEEECCC
T ss_pred EECCCH--------------HHHHHHHHHhccCCEEEEEEe
Confidence 964321 146667889999999887653
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.88 E-value=2.1 Score=35.09 Aligned_cols=93 Identities=17% Similarity=0.170 Sum_probs=57.9
Q ss_pred hCCCCCcEEEEc-cc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-CCCCCCCCeeEEEe
Q 025475 46 YIPTSSRVLMVG-CG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-MSFFEDESFDAVID 121 (252)
Q Consensus 46 ~~~~~~~vLD~G-~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-~~~~~~~~~D~v~~ 121 (252)
.+.++.+||-.| +| .|..+..+++. |. ++++++ ++.-.+.+++.-. -.++..+-.+ .. ..-..+|+|+.
T Consensus 149 ~~~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga-~vi~~~-~~~~~~~~~~lGa----~~~i~~~~~~~~~-~~~~g~D~v~d 221 (321)
T 3tqh_A 149 EVKQGDVVLIHAGAGGVGHLAIQLAKQKGT-TVITTA-SKRNHAFLKALGA----EQCINYHEEDFLL-AISTPVDAVID 221 (321)
T ss_dssp TCCTTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEE-CHHHHHHHHHHTC----SEEEETTTSCHHH-HCCSCEEEEEE
T ss_pred CCCCCCEEEEEcCCcHHHHHHHHHHHHcCC-EEEEEe-ccchHHHHHHcCC----CEEEeCCCcchhh-hhccCCCEEEE
Confidence 467888999997 55 58888888876 55 888887 4554666665421 1222221111 11 11146999985
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.-. -. .+..+.++|+++|.++...
T Consensus 222 ~~g-------------~~-~~~~~~~~l~~~G~iv~~g 245 (321)
T 3tqh_A 222 LVG-------------GD-VGIQSIDCLKETGCIVSVP 245 (321)
T ss_dssp SSC-------------HH-HHHHHGGGEEEEEEEEECC
T ss_pred CCC-------------cH-HHHHHHHhccCCCEEEEeC
Confidence 321 11 2367889999999988764
|
| >3is3_A 17BETA-hydroxysteroid dehydrogenase; short chain dehydrogenase/REDU SDR, fungi, oxidoreductase; HET: GOL; 1.48A {Cochliobolus lunatus} PDB: 3qwf_A* 3qwh_A* 3qwi_A* 3itd_A | Back alignment and structure |
|---|
Probab=87.82 E-value=2.1 Score=34.01 Aligned_cols=109 Identities=15% Similarity=0.151 Sum_probs=64.7
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeC-CHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDI-SSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~-s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
++++|-.|++.|. ++..+++.|. +|+.++. +....+...+.+.. ..++.++.+|+.+.... ..+.
T Consensus 18 ~k~~lVTGas~gIG~aia~~l~~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 96 (270)
T 3is3_A 18 GKVALVTGSGRGIGAAVAVHLGRLGA-KVVVNYANSTKDAEKVVSEIKALGSDAIAIKADIRQVPEIVKLFDQAVAHFGH 96 (270)
T ss_dssp TCEEEESCTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 5578888887653 5666677776 7888775 45545544444432 34688999999875311 1146
Q ss_pred eeEEEeccchhhh-cCCCCChhhH-----------HHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSL-MCGTNAPISA-----------SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~-~~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.|+++.+...... .....+.++. ..+++.+.+.|+++|.++.+.
T Consensus 97 id~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~~~~~~~~~~~~~g~iv~is 152 (270)
T 3is3_A 97 LDIAVSNSGVVSFGHLKDVTEEEFDRVFSLNTRGQFFVAREAYRHLTEGGRIVLTS 152 (270)
T ss_dssp CCEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 8999977554321 0001122333 234456677777788877654
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.81 E-value=0.97 Score=36.09 Aligned_cols=77 Identities=18% Similarity=0.208 Sum_probs=55.0
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCC---------CCCCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF---------FEDES 115 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~---------~~~~~ 115 (252)
.++++|--|++.|. .+..+++.|. +|+.+|.+++.++...+.+.. ..++..+++|+.+... -.-++
T Consensus 8 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~l~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~ 86 (255)
T 4g81_D 8 TGKTALVTGSARGLGFAYAEGLAAAGA-RVILNDIRATLLAESVDTLTRKGYDAHGVAFDVTDELAIEAAFSKLDAEGIH 86 (255)
T ss_dssp TTCEEEETTCSSHHHHHHHHHHHHTTC-EEEECCSCHHHHHHHHHHHHHTTCCEEECCCCTTCHHHHHHHHHHHHHTTCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHCCC
Confidence 46678888887763 6667777776 899999999887766665533 3477888899887431 12367
Q ss_pred eeEEEeccchh
Q 025475 116 FDAVIDKGTLD 126 (252)
Q Consensus 116 ~D~v~~~~~l~ 126 (252)
.|+++.+....
T Consensus 87 iDiLVNNAG~~ 97 (255)
T 4g81_D 87 VDILINNAGIQ 97 (255)
T ss_dssp CCEEEECCCCC
T ss_pred CcEEEECCCCC
Confidence 89999876543
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=87.63 E-value=1.9 Score=34.38 Aligned_cols=75 Identities=9% Similarity=0.197 Sum_probs=55.6
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
+++++|--|++.|. .+..+++.|. +|+.+|.+++.++...+.+.. ..++..+++|+.+.... .-++
T Consensus 6 ~gKvalVTGas~GIG~aiA~~la~~Ga-~Vv~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~G~ 84 (254)
T 4fn4_A 6 KNKVVIVTGAGSGIGRAIAKKFALNDS-IVVAVELLEDRLNQIVQELRGMGKEVLGVKADVSKKKDVEEFVRRTFETYSR 84 (254)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46688888987764 6666777776 899999999888777776643 34788899999875421 1257
Q ss_pred eeEEEeccc
Q 025475 116 FDAVIDKGT 124 (252)
Q Consensus 116 ~D~v~~~~~ 124 (252)
.|+++.+..
T Consensus 85 iDiLVNNAG 93 (254)
T 4fn4_A 85 IDVLCNNAG 93 (254)
T ss_dssp CCEEEECCC
T ss_pred CCEEEECCc
Confidence 899998764
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=87.39 E-value=2.7 Score=31.76 Aligned_cols=67 Identities=16% Similarity=0.274 Sum_probs=43.2
Q ss_pred cEEEEccc--CcH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 52 RVLMVGCG--NAL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 52 ~vLD~G~G--~G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
+||-.|+. .|. ++..|++.|. +|++++.++....... ++++++.+|+.+.....-..+|+|+.....
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~------~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGH-EVTAIVRNAGKITQTH------KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCSHHHHHHC------SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred eEEEEcCCchhHHHHHHHHHhCCC-EEEEEEcCchhhhhcc------CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 57878853 233 4444555675 8999999876544322 468999999987642111357999876543
|
| >3r3s_A Oxidoreductase; structural genomics, csgid, center for structural genomics O infectious diseases, 3-layer(ABA) sandwich, rossmann fold; HET: NAD; 1.25A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=87.26 E-value=1.7 Score=35.18 Aligned_cols=109 Identities=16% Similarity=0.112 Sum_probs=64.3
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCC--HHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDIS--SVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s--~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~ 114 (252)
++++|-.|++.|. ++..+++.|. +|+.++.+ ....+........ ..++.++.+|+.+.... ..+
T Consensus 49 ~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 127 (294)
T 3r3s_A 49 DRKALVTGGDSGIGRAAAIAYAREGA-DVAINYLPAEEEDAQQVKALIEECGRKAVLLPGDLSDESFARSLVHKAREALG 127 (294)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECCGGGHHHHHHHHHHHHHTTCCEEECCCCTTSHHHHHHHHHHHHHHHT
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcchhHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 5688999987653 5666677776 89998886 3334444333322 24678888998875311 114
Q ss_pred CeeEEEeccchhhh--cCCCCChhhH-----------HHHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSL--MCGTNAPISA-----------SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~--~~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|+++.+...... .....+.++. ..+++.+...++++|.++.+.
T Consensus 128 ~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~~~~~~~g~Iv~is 185 (294)
T 3r3s_A 128 GLDILALVAGKQTAIPEIKDLTSEQFQQTFAVNVFALFWITQEAIPLLPKGASIITTS 185 (294)
T ss_dssp CCCEEEECCCCCCCCSSGGGCCHHHHHHHHHHHTHHHHHHHHHHGGGCCTTCEEEEEC
T ss_pred CCCEEEECCCCcCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhcCCEEEEEC
Confidence 68999987653221 0011122333 234456667777888877654
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.80 E-value=5.8 Score=30.29 Aligned_cols=66 Identities=18% Similarity=0.249 Sum_probs=43.1
Q ss_pred cEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEec
Q 025475 52 RVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDK 122 (252)
Q Consensus 52 ~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~ 122 (252)
+|+-+|+|. |. ++..+.+.|. +++++|.+++.++...... .+.++.+|..+... ..-..+|+|++.
T Consensus 2 ~iiIiG~G~~G~~la~~L~~~g~-~v~vid~~~~~~~~l~~~~----~~~~i~gd~~~~~~l~~a~i~~ad~vi~~ 72 (218)
T 3l4b_C 2 KVIIIGGETTAYYLARSMLSRKY-GVVIINKDRELCEEFAKKL----KATIIHGDGSHKEILRDAEVSKNDVVVIL 72 (218)
T ss_dssp CEEEECCHHHHHHHHHHHHHTTC-CEEEEESCHHHHHHHHHHS----SSEEEESCTTSHHHHHHHTCCTTCEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHHHc----CCeEEEcCCCCHHHHHhcCcccCCEEEEe
Confidence 577788753 32 3344444555 8999999999877655432 46788999877421 123468988864
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=86.68 E-value=6.9 Score=27.92 Aligned_cols=96 Identities=10% Similarity=0.094 Sum_probs=54.2
Q ss_pred CcEEEEcccC-cH-hHHHHHHcCCCcEEEEeCC-HHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEeccc
Q 025475 51 SRVLMVGCGN-AL-MSEDMVKDGYEDIVNIDIS-SVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDKGT 124 (252)
Q Consensus 51 ~~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s-~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~~~ 124 (252)
.+|+-+|+|. |. ++..|.+.|. +|+++|.+ ++..+....... ..+.++.+|..+... ..-..+|+|++...
T Consensus 4 ~~vlI~G~G~vG~~la~~L~~~g~-~V~vid~~~~~~~~~~~~~~~--~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~ 80 (153)
T 1id1_A 4 DHFIVCGHSILAINTILQLNQRGQ-NVTVISNLPEDDIKQLEQRLG--DNADVIPGDSNDSSVLKKAGIDRCRAILALSD 80 (153)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTC-CEEEEECCCHHHHHHHHHHHC--TTCEEEESCTTSHHHHHHHTTTTCSEEEECSS
T ss_pred CcEEEECCCHHHHHHHHHHHHCCC-CEEEEECCChHHHHHHHHhhc--CCCeEEEcCCCCHHHHHHcChhhCCEEEEecC
Confidence 4788888762 32 3333444455 89999997 454444443332 247888999876421 12346888886421
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+ ......+....+.+.+...+++..
T Consensus 81 ---------~-d~~n~~~~~~a~~~~~~~~ii~~~ 105 (153)
T 1id1_A 81 ---------N-DADNAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp ---------C-HHHHHHHHHHHHHHTSSSCEEEEC
T ss_pred ---------C-hHHHHHHHHHHHHHCCCCEEEEEE
Confidence 1 222333444455556666666544
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=86.57 E-value=1.7 Score=35.72 Aligned_cols=95 Identities=19% Similarity=0.301 Sum_probs=60.1
Q ss_pred CCCCC-cEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-cc-cC-CCCCCCCCeeEE
Q 025475 47 IPTSS-RVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DV-RD-MSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~-~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-d~-~~-~~~~~~~~~D~v 119 (252)
+.++. +||-.|+ |.|..+..+++. |. ++++++.+++-++.+++.-. -.++.. +. .+ ........+|+|
T Consensus 147 ~~~g~~~VlV~Ga~G~vG~~~~q~a~~~Ga-~vi~~~~~~~~~~~~~~lGa----~~v~~~~~~~~~~~~~~~~~~~d~v 221 (330)
T 1tt7_A 147 LSPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGA----SEVISREDVYDGTLKALSKQQWQGA 221 (330)
T ss_dssp CCGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTC----SEEEEHHHHCSSCCCSSCCCCEEEE
T ss_pred cCCCCceEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHcCC----cEEEECCCchHHHHHHhhcCCccEE
Confidence 55664 8999997 357777777765 65 79999998877777765321 122221 11 11 111223469999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+..-. . ..+..+.++|+++|.+++...
T Consensus 222 id~~g------------~--~~~~~~~~~l~~~G~iv~~G~ 248 (330)
T 1tt7_A 222 VDPVG------------G--KQLASLLSKIQYGGSVAVSGL 248 (330)
T ss_dssp EESCC------------T--HHHHHHHTTEEEEEEEEECCC
T ss_pred EECCc------------H--HHHHHHHHhhcCCCEEEEEec
Confidence 85321 1 257778899999999887643
|
| >3v2g_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, protein structure initiati nysgrc; 2.30A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=86.04 E-value=3.9 Score=32.55 Aligned_cols=110 Identities=12% Similarity=0.142 Sum_probs=64.9
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCC-HHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDIS-SVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s-~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~ 114 (252)
.++++|-.|++.|. ++..+++.|. +|+.++.. ....+.....+.. ..++.++.+|+.+.... ..+
T Consensus 30 ~gk~~lVTGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g 108 (271)
T 3v2g_A 30 AGKTAFVTGGSRGIGAAIAKRLALEGA-AVALTYVNAAERAQAVVSEIEQAGGRAVAIRADNRDAEAIEQAIRETVEALG 108 (271)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcC
Confidence 45689999987653 6666777776 78888654 4444444443322 34678899999875311 114
Q ss_pred CeeEEEeccchhhh-cCCCCChhhH-----------HHHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSL-MCGTNAPISA-----------SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~-~~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|+++.+...... .....+.++. ..+++.+.+.|+++|.++.+.
T Consensus 109 ~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~m~~~g~iv~is 165 (271)
T 3v2g_A 109 GLDILVNSAGIWHSAPLEETTVADFDEVMAVNFRAPFVAIRSASRHLGDGGRIITIG 165 (271)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHCCTTCEEEEEC
T ss_pred CCcEEEECCCCCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 68999987643221 0001122333 234556667777788777653
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=85.94 E-value=1.2 Score=35.55 Aligned_cols=77 Identities=12% Similarity=0.211 Sum_probs=52.5
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
.++++|--|++.|. .+..+++.|. +|+.+|.+++..+.+++..+..+++.++.+|+.+.... .-++.
T Consensus 6 ~gKvalVTGas~GIG~aia~~la~~Ga-~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~v~~~~~~~G~i 84 (258)
T 4gkb_A 6 QDKVVIVTGGASGIGGAISMRLAEERA-IPVVFARHAPDGAFLDALAQRQPRATYLPVELQDDAQCRDAVAQTIATFGRL 84 (258)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSCCCHHHHHHHHHHCTTCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCcccHHHHHHHHhcCCCEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 46688888988764 5667777776 89999987654444443333345788999999875311 12578
Q ss_pred eEEEeccchh
Q 025475 117 DAVIDKGTLD 126 (252)
Q Consensus 117 D~v~~~~~l~ 126 (252)
|+++.+..+.
T Consensus 85 DiLVNnAGi~ 94 (258)
T 4gkb_A 85 DGLVNNAGVN 94 (258)
T ss_dssp CEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 9999887544
|
| >3u5t_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.40A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=85.87 E-value=1.7 Score=34.63 Aligned_cols=110 Identities=17% Similarity=0.232 Sum_probs=63.8
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEE-eCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNI-DISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~v-D~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~ 114 (252)
.+.++|-.|++.|. .+..+++.|. +|+.+ ..++...+.....+.. ..++.++.+|+.+.... ..+
T Consensus 26 ~~k~~lVTGas~GIG~aia~~la~~G~-~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 104 (267)
T 3u5t_A 26 TNKVAIVTGASRGIGAAIAARLASDGF-TVVINYAGKAAAAEEVAGKIEAAGGKALTAQADVSDPAAVRRLFATAEEAFG 104 (267)
T ss_dssp -CCEEEEESCSSHHHHHHHHHHHHHTC-EEEEEESSCSHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHHHHHHcC
Confidence 46688988987663 6666777776 67766 4444444444444322 34688889999875311 114
Q ss_pred CeeEEEeccchhhh-cCCCCChhhHH-----------HHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSL-MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~-~~~~~~~~~~~-----------~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|+++.+...... .+...+.++.. .+++.+...++++|.++.+.
T Consensus 105 ~iD~lvnnAG~~~~~~~~~~~~~~~~~~~~vN~~g~~~~~~~~~~~~~~~g~iv~is 161 (267)
T 3u5t_A 105 GVDVLVNNAGIMPLTTIAETGDAVFDRVIAVNLKGTFNTLREAAQRLRVGGRIINMS 161 (267)
T ss_dssp CEEEEEECCCCCCCCCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred CCCEEEECCCCCCCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 78999987654321 01111223222 33455666777788877654
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=85.67 E-value=3.7 Score=35.30 Aligned_cols=96 Identities=15% Similarity=0.057 Sum_probs=60.9
Q ss_pred hCCCCCcEEEEcc-c-CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC---------------
Q 025475 46 YIPTSSRVLMVGC-G-NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM--------------- 108 (252)
Q Consensus 46 ~~~~~~~vLD~G~-G-~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~--------------- 108 (252)
.+.++.+||-.|+ | .|..+..+++....++++++.+++-++.+++.-. -.++...-.+.
T Consensus 217 ~~~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa----~~~i~~~~~~~~~~~~~~~~~~~~~~ 292 (447)
T 4a0s_A 217 QMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGC----DLVINRAELGITDDIADDPRRVVETG 292 (447)
T ss_dssp CCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----CCEEEHHHHTCCTTGGGCHHHHHHHH
T ss_pred CCCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC----CEEEecccccccccccccccccchhh
Confidence 3567889999997 3 5777777777633389999999998888865421 12222111111
Q ss_pred -------CCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 109 -------SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 109 -------~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.......+|+|+..-. . ..+....++|+++|.+++..
T Consensus 293 ~~~~~~v~~~~g~g~Dvvid~~G------------~--~~~~~~~~~l~~~G~iv~~G 336 (447)
T 4a0s_A 293 RKLAKLVVEKAGREPDIVFEHTG------------R--VTFGLSVIVARRGGTVVTCG 336 (447)
T ss_dssp HHHHHHHHHHHSSCCSEEEECSC------------H--HHHHHHHHHSCTTCEEEESC
T ss_pred hHHHHHHHHHhCCCceEEEECCC------------c--hHHHHHHHHHhcCCEEEEEe
Confidence 0001246999986422 1 24677788999999988754
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=85.62 E-value=4.3 Score=32.58 Aligned_cols=92 Identities=18% Similarity=0.321 Sum_probs=57.8
Q ss_pred CcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--------C------------CCCeEEEccccCC
Q 025475 51 SRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--------I------------PQLKYLQMDVRDM 108 (252)
Q Consensus 51 ~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--------~------------~~v~~~~~d~~~~ 108 (252)
.+|.-+|+|. | .++..++..|. +|+++|.+++.++.+.+.+.. . .++.. ..|..+.
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~-~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~-~~~~~~~ 82 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGF-AVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRY-SDDLAQA 82 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEE-ESCHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEE-eCCHHHH
Confidence 3688889885 3 45556666676 899999999988877765311 0 01121 2222211
Q ss_pred CCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 109 SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 109 ~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
-...|+|+..-. .+.+....+++++...++++..++
T Consensus 83 ----~~~aDlVi~av~--------~~~~~~~~v~~~l~~~~~~~~il~ 118 (283)
T 4e12_A 83 ----VKDADLVIEAVP--------ESLDLKRDIYTKLGELAPAKTIFA 118 (283)
T ss_dssp ----TTTCSEEEECCC--------SCHHHHHHHHHHHHHHSCTTCEEE
T ss_pred ----hccCCEEEEecc--------CcHHHHHHHHHHHHhhCCCCcEEE
Confidence 135899986422 233466788899999998877654
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=85.46 E-value=8.3 Score=30.96 Aligned_cols=93 Identities=13% Similarity=0.185 Sum_probs=56.0
Q ss_pred CcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE--------ccccCCCCCCC--CCeeE
Q 025475 51 SRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ--------MDVRDMSFFED--ESFDA 118 (252)
Q Consensus 51 ~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~--------~d~~~~~~~~~--~~~D~ 118 (252)
++|.-+|+|. | .++..+++.|. +|+.+|.+++.++..++.- +.... .+..+..+... ..+|+
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~r~~~~~~~~~~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGN-DVTLIDQWPAHIEAIRKNG-----LIADFNGEEVVANLPIFSPEEIDHQNEQVDL 77 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHC-----EEEEETTEEEEECCCEECGGGCCTTSCCCSE
T ss_pred CeEEEECcCHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhCC-----EEEEeCCCeeEecceeecchhhcccCCCCCE
Confidence 4788999984 3 35555666666 8999999998777666541 11111 11111110111 26899
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+..-. ......+++.+...++++..++...
T Consensus 78 vi~~v~----------~~~~~~v~~~l~~~l~~~~~iv~~~ 108 (316)
T 2ew2_A 78 IIALTK----------AQQLDAMFKAIQPMITEKTYVLCLL 108 (316)
T ss_dssp EEECSC----------HHHHHHHHHHHGGGCCTTCEEEECC
T ss_pred EEEEec----------cccHHHHHHHHHHhcCCCCEEEEec
Confidence 986432 2455777888888888776655443
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=85.36 E-value=5.3 Score=32.33 Aligned_cols=95 Identities=19% Similarity=0.216 Sum_probs=57.3
Q ss_pred CCcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 50 SSRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 50 ~~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.++|.-+|+|. | .++..+++.|. +|++.|.+++.++.+.+. + ......+..+. -...|+|+..-.
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~-~V~~~dr~~~~~~~~~~~----g-~~~~~~~~~e~----~~~aDvvi~~vp--- 73 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGL-STWGADLNPQACANLLAE----G-ACGAAASAREF----AGVVDALVILVV--- 73 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----T-CSEEESSSTTT----TTTCSEEEECCS---
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHHHc----C-CccccCCHHHH----HhcCCEEEEECC---
Confidence 35788899884 3 45666667776 899999999887776653 1 12212233222 135799986432
Q ss_pred hcCCCCChhhHHHHH---HHHHHcccCCcEEEEEEcCCh
Q 025475 128 LMCGTNAPISASQML---GEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l---~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++.....++ +.+...+++|..++-.....|
T Consensus 74 ------~~~~~~~v~~~~~~l~~~l~~g~ivv~~st~~~ 106 (303)
T 3g0o_A 74 ------NAAQVRQVLFGEDGVAHLMKPGSAVMVSSTISS 106 (303)
T ss_dssp ------SHHHHHHHHC--CCCGGGSCTTCEEEECSCCCH
T ss_pred ------CHHHHHHHHhChhhHHhhCCCCCEEEecCCCCH
Confidence 223445555 566677887776654443444
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=85.34 E-value=3.8 Score=37.57 Aligned_cols=108 Identities=15% Similarity=0.290 Sum_probs=69.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCC-------CcEEEEeCC-HHHHHHHHHhhcCC-------------------------
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGY-------EDIVNIDIS-SVAIDMMKMKYEEI------------------------- 95 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~-------~~v~~vD~s-~~~i~~a~~~~~~~------------------------- 95 (252)
+...|+-+|||.=.....+..... ..+..+|++ |+.++.=++.+...
T Consensus 107 ~~~qvV~LGaGlDtr~~Rl~~~~~~~~~~~~~~~~~~EvD~p~v~~~K~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 186 (695)
T 2zwa_A 107 KKIVVVNLGCGYDPLPFQLLDTNNIQSQQYHDRVSFIDIDYSDLLKIKIELIKTIPELSKIIGLSEDKDYVDDSNVDFLT 186 (695)
T ss_dssp SEEEEEEETCTTCCHHHHHHCTTCGGGGGGSSSEEEEEEECHHHHHHHHHHHHHCHHHHHHTTCCSSCSSCSCTTCCCEE
T ss_pred CCcEEEEcccccCcceeeeeccCcccccccCCCCEEEECccHHHHHHHHHHHHcChHHHHhhcccccccccccccccccc
Confidence 345899999998777777755411 234444444 44444444433210
Q ss_pred -CCCeEEEccccCCCC---------C-CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 96 -PQLKYLQMDVRDMSF---------F-EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 96 -~~v~~~~~d~~~~~~---------~-~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.+.+++.+|+++... + .....-++++-.++.++ +++...++++.+.+. ++|.+++.+...|
T Consensus 187 s~~y~~v~~Dl~~~~~~~~~l~~~g~~d~~~ptl~i~Egvl~Yl-----~~~~~~~ll~~~~~~--~~~~~~~~e~~~~ 258 (695)
T 2zwa_A 187 TPKYLARPCDLNDSKMFSTLLNECQLYDPNVVKVFVAEVSLAYM-----KPERSDSIIEATSKM--ENSHFIILEQLIP 258 (695)
T ss_dssp CSSEEEEECCTTCHHHHHHHHHHTTTTCTTEEEEEEEESSGGGS-----CHHHHHHHHHHHHTS--SSEEEEEEEECCT
T ss_pred CCCeeEEeCcCCCcHHHHHHHhhccCCCCCCCEEEeeeeEEEEc-----CHHHHHHHHHHHhhC--CCceEEEEEeecC
Confidence 256788899987421 1 23334567777889999 889999999998864 6777777665444
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=85.25 E-value=1.4 Score=35.08 Aligned_cols=75 Identities=11% Similarity=0.136 Sum_probs=50.8
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC----------CCCC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF----------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~----------~~~~ 115 (252)
++++|-.|++.|. ++..+++.|. +|++++.++..++...+.+.. ..++.++.+|+.+.... ..+.
T Consensus 21 ~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~g~ 99 (273)
T 1ae1_A 21 GTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDGK 99 (273)
T ss_dssp TCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTSC
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHHHHHHHHHcCCC
Confidence 5678888886552 5556666676 899999998776655444432 23678889998775311 0157
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+...
T Consensus 100 id~lv~nAg~ 109 (273)
T 1ae1_A 100 LNILVNNAGV 109 (273)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECCCC
Confidence 8999987654
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=85.17 E-value=2.1 Score=35.92 Aligned_cols=93 Identities=16% Similarity=0.227 Sum_probs=57.6
Q ss_pred CCCCcEEEEccc--CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----CCCCCCeeEEE
Q 025475 48 PTSSRVLMVGCG--NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVI 120 (252)
Q Consensus 48 ~~~~~vLD~G~G--~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~~D~v~ 120 (252)
.++.+||-.|++ .|..+..+++. |. +++++. ++.-.+.+++.- ...++...-.++. ....+.+|+|+
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga-~Vi~~~-~~~~~~~~~~lG----a~~vi~~~~~~~~~~v~~~t~g~~d~v~ 236 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGY-IPIATC-SPHNFDLAKSRG----AEEVFDYRAPNLAQTIRTYTKNNLRYAL 236 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHTT----CSEEEETTSTTHHHHHHHHTTTCCCEEE
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCC-EEEEEe-CHHHHHHHHHcC----CcEEEECCCchHHHHHHHHccCCccEEE
Confidence 567799999983 68888888876 55 788875 777777776542 2223322111110 01234599999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcc-cCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLL-KPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L-~~gG~l~i~~ 159 (252)
..-. -...++.+.+.| +++|.+++..
T Consensus 237 d~~g-------------~~~~~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 237 DCIT-------------NVESTTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp ESSC-------------SHHHHHHHHHHSCTTCEEEEESS
T ss_pred ECCC-------------chHHHHHHHHHhhcCCCEEEEEe
Confidence 5321 123466677788 6999987754
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=85.07 E-value=8.8 Score=30.42 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=52.6
Q ss_pred cEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 52 RVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 52 ~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
+|.-+|+|. | .++..+.+.|. +|+++|.+++.++.+++. +....... +..+. ...|+|+..-
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~-~V~~~~~~~~~~~~~~~~----g~~~~~~~---~~~~~--~~~D~vi~av------ 65 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVER----QLVDEAGQ---DLSLL--QTAKIIFLCT------ 65 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT----TSCSEEES---CGGGG--TTCSEEEECS------
T ss_pred EEEEEcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHhC----CCCccccC---CHHHh--CCCCEEEEEC------
Confidence 577889884 3 35555666666 899999999877766532 11111112 22212 4689998643
Q ss_pred CCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 130 CGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
++.....+++++...++++..++
T Consensus 66 ----~~~~~~~~~~~l~~~~~~~~~vv 88 (279)
T 2f1k_A 66 ----PIQLILPTLEKLIPHLSPTAIVT 88 (279)
T ss_dssp ----CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred ----CHHHHHHHHHHHHhhCCCCCEEE
Confidence 23455677888888888776554
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=84.94 E-value=9.9 Score=29.21 Aligned_cols=71 Identities=14% Similarity=0.276 Sum_probs=46.6
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC----C-CCCCeeEEEe
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----F-EDESFDAVID 121 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~----~-~~~~~D~v~~ 121 (252)
++++|-.|++.| .++..+++.|. +|++++.++...+...... ..++++.+|+.+... + ..+..|+|+.
T Consensus 7 ~~~vlVTGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~---~~~~~~~~D~~~~~~~~~~~~~~~~id~vi~ 82 (244)
T 1cyd_A 7 GLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC---PGIEPVCVDLGDWDATEKALGGIGPVDLLVN 82 (244)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCSEEEE
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHhc---cCCCcEEecCCCHHHHHHHHHHcCCCCEEEE
Confidence 457888887544 24555566676 8999999987665444332 356778888877431 1 1246899998
Q ss_pred ccc
Q 025475 122 KGT 124 (252)
Q Consensus 122 ~~~ 124 (252)
+..
T Consensus 83 ~Ag 85 (244)
T 1cyd_A 83 NAA 85 (244)
T ss_dssp CCC
T ss_pred CCc
Confidence 754
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=84.79 E-value=2.1 Score=35.47 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=59.4
Q ss_pred CCCCCcEEEEcc-c-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-----CCCCCeeE
Q 025475 47 IPTSSRVLMVGC-G-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-----FEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~-G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~D~ 118 (252)
+.++.+||-.|+ | .|..+..+++. |. +|+++ .+++-++.+++.-. ..+. +-.+... .....+|+
T Consensus 148 ~~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga-~Vi~~-~~~~~~~~~~~lGa-----~~i~-~~~~~~~~~~~~~~~~g~D~ 219 (343)
T 3gaz_A 148 VQDGQTVLIQGGGGGVGHVAIQIALARGA-RVFAT-ARGSDLEYVRDLGA-----TPID-ASREPEDYAAEHTAGQGFDL 219 (343)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEE-ECHHHHHHHHHHTS-----EEEE-TTSCHHHHHHHHHTTSCEEE
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCC-EEEEE-eCHHHHHHHHHcCC-----CEec-cCCCHHHHHHHHhcCCCceE
Confidence 567889999994 3 58888887776 55 89999 88888887766421 2222 1111110 12346999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+..-. ...+..+.+.|+++|.+++..
T Consensus 220 vid~~g--------------~~~~~~~~~~l~~~G~iv~~g 246 (343)
T 3gaz_A 220 VYDTLG--------------GPVLDASFSAVKRFGHVVSCL 246 (343)
T ss_dssp EEESSC--------------THHHHHHHHHEEEEEEEEESC
T ss_pred EEECCC--------------cHHHHHHHHHHhcCCeEEEEc
Confidence 986321 135777788999999988754
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=84.71 E-value=2.7 Score=33.44 Aligned_cols=75 Identities=13% Similarity=0.233 Sum_probs=44.2
Q ss_pred CCcEEEEccc--Cc--H-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCG--NA--L-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G--~G--~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
++++|-.|++ .| . ++..+++.|. +|++++.++..-+..++.....+.+.++.+|+.+.... ..+.
T Consensus 6 ~k~vlVTGas~~~gIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 84 (275)
T 2pd4_A 6 GKKGLIVGVANNKSIAYGIAQSCFNQGA-TLAFTYLNESLEKRVRPIAQELNSPYVYELDVSKEEHFKSLYNSVKKDLGS 84 (275)
T ss_dssp TCEEEEECCCSTTSHHHHHHHHHHTTTC-EEEEEESSTTTHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4578888875 33 2 4444555565 89999988751112222111123478889998874311 1246
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+...
T Consensus 85 id~lv~nAg~ 94 (275)
T 2pd4_A 85 LDFIVHSVAF 94 (275)
T ss_dssp EEEEEECCCC
T ss_pred CCEEEECCcc
Confidence 8999987653
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=84.39 E-value=1.8 Score=36.34 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=43.5
Q ss_pred CCCcEEEEccc-CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCC--CCCeeEEEecc
Q 025475 49 TSSRVLMVGCG-NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE--DESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G-~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~--~~~~D~v~~~~ 123 (252)
+.++|+-+||| .|......+.. ..+++.+|.+...++.++. .+..+..|+.+...+. -...|+|+...
T Consensus 15 ~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~------~~~~~~~d~~d~~~l~~~~~~~DvVi~~~ 85 (365)
T 3abi_A 15 RHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKE------FATPLKVDASNFDKLVEVMKEFELVIGAL 85 (365)
T ss_dssp -CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTT------TSEEEECCTTCHHHHHHHHTTCSEEEECC
T ss_pred CccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhc------cCCcEEEecCCHHHHHHHHhCCCEEEEec
Confidence 45689999996 35544444433 3489999999987776643 3466777776643111 13579988754
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=84.35 E-value=3.2 Score=32.64 Aligned_cols=74 Identities=22% Similarity=0.358 Sum_probs=52.9
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
++++|-.|++.|. ++..+++.|. +|++++.+++.++.+...+... .++.++.+|+.+.... ..+..
T Consensus 6 ~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 84 (257)
T 3imf_A 6 EKVVIITGGSSGMGKGMATRFAKEGA-RVVITGRTKEKLEEAKLEIEQFPGQILTVQMDVRNTDDIQKMIEQIDEKFGRI 84 (257)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCSTTCEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCCC
Confidence 4578888876652 5666677776 8999999998888777766543 3788899999875311 11468
Q ss_pred eEEEeccc
Q 025475 117 DAVIDKGT 124 (252)
Q Consensus 117 D~v~~~~~ 124 (252)
|+++.+..
T Consensus 85 d~lv~nAg 92 (257)
T 3imf_A 85 DILINNAA 92 (257)
T ss_dssp CEEEECCC
T ss_pred CEEEECCC
Confidence 99998754
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=84.28 E-value=16 Score=33.89 Aligned_cols=106 Identities=16% Similarity=0.228 Sum_probs=68.6
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------------CC-C--CeEEEccccCCCCCC
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------------IP-Q--LKYLQMDVRDMSFFE 112 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------------~~-~--v~~~~~d~~~~~~~~ 112 (252)
.+|--+|+|+ +.++..++..|. .|+..|++++.++.++..... .. . .-....+..++
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l---- 391 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGI-SVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKEL---- 391 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTC-EEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGG----
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-chhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHH----
Confidence 3899999996 345666667777 999999999998888765421 00 0 01111222222
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
...|+|+-. +.+.+ +-.+++++++-.+++|+.+|.-.+-+-+...+..-
T Consensus 392 -~~aDlVIEA-V~E~l-------~iK~~vf~~le~~~~~~aIlASNTSsl~i~~ia~~ 440 (742)
T 3zwc_A 392 -STVDLVVEA-VFEDM-------NLKKKVFAELSALCKPGAFLCTNTSALNVDDIASS 440 (742)
T ss_dssp -GSCSEEEEC-CCSCH-------HHHHHHHHHHHHHSCTTCEEEECCSSSCHHHHHTT
T ss_pred -hhCCEEEEe-ccccH-------HHHHHHHHHHhhcCCCCceEEecCCcCChHHHHhh
Confidence 247888854 33444 88899999999999998877655545554444433
|
| >4hp8_A 2-deoxy-D-gluconate 3-dehydrogenase; enzyme function initiative, EFI, structural genomics, oxidor; HET: NAP; 1.35A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=84.28 E-value=5.8 Score=31.36 Aligned_cols=73 Identities=18% Similarity=0.356 Sum_probs=49.7
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCH--HHHHHHHHhhcCCCCCeEEEccccCCCC----CCCCCeeEE
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISS--VAIDMMKMKYEEIPQLKYLQMDVRDMSF----FEDESFDAV 119 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~--~~i~~a~~~~~~~~~v~~~~~d~~~~~~----~~~~~~D~v 119 (252)
.++++|--|++.|. .+..|++.|. +|+.+|.+. +..+..++ ...++..+++|+.+... +..+..|++
T Consensus 8 ~GKvalVTGas~GIG~aiA~~la~~Ga-~Vvi~~r~~~~~~~~~~~~---~g~~~~~~~~Dv~d~~~v~~~~~~g~iDiL 83 (247)
T 4hp8_A 8 EGRKALVTGANTGLGQAIAVGLAAAGA-EVVCAARRAPDETLDIIAK---DGGNASALLIDFADPLAAKDSFTDAGFDIL 83 (247)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCCHHHHHHHHH---TTCCEEEEECCTTSTTTTTTSSTTTCCCEE
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHcCC-EEEEEeCCcHHHHHHHHHH---hCCcEEEEEccCCCHHHHHHHHHhCCCCEE
Confidence 36678888887764 6677777776 899999874 33333222 23467889999987542 345779999
Q ss_pred Eeccch
Q 025475 120 IDKGTL 125 (252)
Q Consensus 120 ~~~~~l 125 (252)
+.+..+
T Consensus 84 VNNAGi 89 (247)
T 4hp8_A 84 VNNAGI 89 (247)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 987654
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=84.03 E-value=1.3 Score=38.57 Aligned_cols=68 Identities=15% Similarity=0.293 Sum_probs=46.9
Q ss_pred CCcEEEEcccC-cHhHHH-HHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEec
Q 025475 50 SSRVLMVGCGN-ALMSED-MVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDK 122 (252)
Q Consensus 50 ~~~vLD~G~G~-G~~~~~-l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~ 122 (252)
.++|+-+|||. |..... |...|+ +|+.+|.+++.++.+...+ .+..+++|..+..- ..-..+|++++.
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~-~v~vId~d~~~~~~~~~~~----~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~ 75 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENN-DITIVDKDGDRLRELQDKY----DLRVVNGHASHPDVLHEAGAQDADMLVAV 75 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTE-EEEEEESCHHHHHHHHHHS----SCEEEESCTTCHHHHHHHTTTTCSEEEEC
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCC-CEEEEECCHHHHHHHHHhc----CcEEEEEcCCCHHHHHhcCCCcCCEEEEE
Confidence 45788888873 443332 223344 8999999999998887765 46889999987531 223568988863
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=83.78 E-value=9 Score=33.13 Aligned_cols=103 Identities=11% Similarity=0.084 Sum_probs=58.2
Q ss_pred CcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---------------CCCCeEEEccccCCCCCCC
Q 025475 51 SRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---------------IPQLKYLQMDVRDMSFFED 113 (252)
Q Consensus 51 ~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---------------~~~v~~~~~d~~~~~~~~~ 113 (252)
++|.-+|+|. | .++..+++.|. +|+++|.+++.++..++.... ..++++ ..|..+. -
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~-~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~-t~d~~ea----~ 76 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGA-NVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRF-GTEIEQA----V 76 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEE-ESCHHHH----G
T ss_pred CEEEEECcCHHHHHHHHHHHhcCC-EEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEE-ECCHHHH----H
Confidence 4688888884 3 45566666676 899999999988877663210 011111 1122111 1
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...|+|+..-.-..-..+.++.....++++.+...|++|-.++...
T Consensus 77 ~~aDvViiaVptp~~~~~~~dl~~v~~v~~~i~~~l~~g~iVV~~S 122 (450)
T 3gg2_A 77 PEADIIFIAVGTPAGEDGSADMSYVLDAARSIGRAMSRYILIVTKS 122 (450)
T ss_dssp GGCSEEEECCCCCBCTTSSBCCHHHHHHHHHHHHHCCSCEEEEECS
T ss_pred hcCCEEEEEcCCCcccCCCcChHHHHHHHHHHHhhCCCCCEEEEee
Confidence 2478887643211000111222367888888989898776655544
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=83.63 E-value=3.9 Score=32.32 Aligned_cols=74 Identities=18% Similarity=0.228 Sum_probs=53.0
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCCe
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
++++|-.|++.|. ++..+++.|. +|+.++.+++.++...+.+.. ..++.++.+|+.+.... ..+..
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 89 (264)
T 3ucx_A 11 DKVVVISGVGPALGTTLARRCAEQGA-DLVLAARTVERLEDVAKQVTDTGRRALSVGTDITDDAQVAHLVDETMKAYGRV 89 (264)
T ss_dssp TCEEEEESCCTTHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTSCC
T ss_pred CcEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 5688888987653 6666777776 899999998877776665533 34788999999875311 12478
Q ss_pred eEEEeccc
Q 025475 117 DAVIDKGT 124 (252)
Q Consensus 117 D~v~~~~~ 124 (252)
|+++.+..
T Consensus 90 d~lv~nAg 97 (264)
T 3ucx_A 90 DVVINNAF 97 (264)
T ss_dssp SEEEECCC
T ss_pred cEEEECCC
Confidence 99998753
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=83.58 E-value=3.5 Score=33.38 Aligned_cols=76 Identities=13% Similarity=0.159 Sum_probs=54.0
Q ss_pred CCCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 49 TSSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 49 ~~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
.+.+||-.|++.| .++..+++.|. +|++++.++..++.+.+.+.. ..++.++.+|+.+.... ..+.
T Consensus 30 ~gk~vlVTGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 108 (301)
T 3tjr_A 30 DGRAAVVTGGASGIGLATATEFARRGA-RLVLSDVDQPALEQAVNGLRGQGFDAHGVVCDVRHLDEMVRLADEAFRLLGG 108 (301)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHHHHHHhCCC
Confidence 3568999998765 36666677776 899999999887776666543 34788999999875311 0146
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+...
T Consensus 109 id~lvnnAg~ 118 (301)
T 3tjr_A 109 VDVVFSNAGI 118 (301)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCc
Confidence 8999987653
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=83.19 E-value=6.5 Score=31.36 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=44.7
Q ss_pred CCcEEEEccc--C--cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCG--N--AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G--~--G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
+.++|-.|++ . |. ++..+++.|. +|++++.++..-+..++.....+.+.++.+|+.+.... .-+.
T Consensus 21 ~k~vlVTGas~~~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g~ 99 (285)
T 2p91_A 21 GKRALITGVANERSIAYGIAKSFHREGA-QLAFTYATPKLEKRVREIAKGFGSDLVVKCDVSLDEDIKNLKKFLEENWGS 99 (285)
T ss_dssp TCEEEECCCSSTTSHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHHHHHHTTCCCEEECCTTCHHHHHHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4578888875 2 32 4455566676 89999988742122222111123467889998875311 1246
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+...
T Consensus 100 iD~lv~~Ag~ 109 (285)
T 2p91_A 100 LDIIVHSIAY 109 (285)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999987653
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=83.16 E-value=4.2 Score=32.49 Aligned_cols=76 Identities=5% Similarity=0.075 Sum_probs=52.8
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
.+.++|-.|++.|. ++..+++.|. +|++++.++..++...+.+.. ..++.++.+|+.+.... .-+.
T Consensus 23 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 101 (279)
T 3sju_A 23 RPQTAFVTGVSSGIGLAVARTLAARGI-AVYGCARDAKNVSAAVDGLRAAGHDVDGSSCDVTSTDEVHAAVAAAVERFGP 101 (279)
T ss_dssp --CEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 45689999987653 5666777776 899999998877766665543 34788999999875311 1146
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+...
T Consensus 102 id~lv~nAg~ 111 (279)
T 3sju_A 102 IGILVNSAGR 111 (279)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECCCC
Confidence 8999987653
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=83.05 E-value=3.4 Score=32.30 Aligned_cols=76 Identities=17% Similarity=0.245 Sum_probs=53.3
Q ss_pred CCCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 49 TSSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 49 ~~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
.+.++|-.|++.| .++..+++.|. +|+++|.+++..+.....+.. ..++.++.+|+.+.... ..+.
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 86 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGA-AVVVADINAEAAEAVAKQIVADGGTAISVAVDVSDPESAKAMADRTLAEFGG 86 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 3567888898765 36666677776 899999999877776665533 34678899999875311 1136
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+..+
T Consensus 87 id~li~~Ag~ 96 (253)
T 3qiv_A 87 IDYLVNNAAI 96 (253)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCc
Confidence 8999987654
|
| >1g0o_A Trihydroxynaphthalene reductase; protein-NADPH-active site inhibitor complex, dinucleotide binding fold, oxidoreductase; HET: NDP PYQ; 1.70A {Magnaporthe grisea} SCOP: c.2.1.2 PDB: 1doh_A* 1g0n_A* 1ybv_A* | Back alignment and structure |
|---|
Probab=82.84 E-value=4.2 Score=32.48 Aligned_cols=109 Identities=16% Similarity=0.197 Sum_probs=60.9
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHH-HHHHHHHhhcC-CCCCeEEEccccCCCCC----C-----CCC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSV-AIDMMKMKYEE-IPQLKYLQMDVRDMSFF----E-----DES 115 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~-~i~~a~~~~~~-~~~v~~~~~d~~~~~~~----~-----~~~ 115 (252)
++++|-.|++.|. ++..+++.|. +|++++.++. ..+...+.+.. ..++.++.+|+.+.... . -+.
T Consensus 29 ~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~g~ 107 (283)
T 1g0o_A 29 GKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFGK 107 (283)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCchHHHHHHHHHHHHhCCCeEEEEcCCCCHHHHHHHHHHHHHHcCC
Confidence 4578888876552 5555666676 8999988753 23333332322 23678888998774311 0 146
Q ss_pred eeEEEeccchhhhc-CCCCChhhHH-----------HHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSLM-CGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~~-~~~~~~~~~~-----------~~l~~~~~~L~~gG~l~i~~ 159 (252)
.|+++.+....... ....+.++.. .+++.+.+.|+.+|.++.+.
T Consensus 108 iD~lv~~Ag~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~g~iv~is 163 (283)
T 1g0o_A 108 LDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 163 (283)
T ss_dssp CCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCEEEECCCcCCCCCcccCCHHHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 89999876533210 0011223332 23455566666678777654
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=82.56 E-value=5.5 Score=31.90 Aligned_cols=76 Identities=17% Similarity=0.225 Sum_probs=53.6
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
.+.++|-.|++.|. .+..+++.|. +|+.+|.+++.++.....+.. ..++.++.+|+.+.... ..+.
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 105 (283)
T 3v8b_A 27 PSPVALITGAGSGIGRATALALAADGV-TVGALGRTRTEVEEVADEIVGAGGQAIALEADVSDELQMRNAVRDLVLKFGH 105 (283)
T ss_dssp CCCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHTTTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 35578888887653 5566667776 899999999877777666643 34688899999875311 1247
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+...
T Consensus 106 iD~lVnnAg~ 115 (283)
T 3v8b_A 106 LDIVVANAGI 115 (283)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999987654
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=82.24 E-value=4.6 Score=31.78 Aligned_cols=75 Identities=15% Similarity=0.288 Sum_probs=53.1
Q ss_pred CCcEEEEcc-cCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCC---------CCC
Q 025475 50 SSRVLMVGC-GNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 50 ~~~vLD~G~-G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~---------~~~ 114 (252)
+.++|-.|+ |.|. ++..+++.|. +|++++.++..++.....+... .++.++.+|+.+.... ..+
T Consensus 22 ~k~vlITGasg~GIG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dl~~~~~v~~~~~~~~~~~g 100 (266)
T 3o38_A 22 GKVVLVTAAAGTGIGSTTARRALLEGA-DVVISDYHERRLGETRDQLADLGLGRVEAVVCDVTSTEAVDALITQTVEKAG 100 (266)
T ss_dssp TCEEEESSCSSSSHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCSSCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCchHHHHHHHHHHCCC-EEEEecCCHHHHHHHHHHHHhcCCCceEEEEeCCCCHHHHHHHHHHHHHHhC
Confidence 557888887 5542 6666777776 8999999988777776666432 3789999999875311 114
Q ss_pred CeeEEEeccch
Q 025475 115 SFDAVIDKGTL 125 (252)
Q Consensus 115 ~~D~v~~~~~l 125 (252)
..|+++.+..+
T Consensus 101 ~id~li~~Ag~ 111 (266)
T 3o38_A 101 RLDVLVNNAGL 111 (266)
T ss_dssp CCCEEEECCCC
T ss_pred CCcEEEECCCc
Confidence 68999987654
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=82.07 E-value=6.5 Score=29.73 Aligned_cols=98 Identities=11% Similarity=0.108 Sum_probs=55.7
Q ss_pred cEEEEccc--CcH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 52 RVLMVGCG--NAL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 52 ~vLD~G~G--~G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
+||-.|+. .|. ++..|++.|. +|++++.++....... ..+++++.+|+.+.....-..+|+|+......+-
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~-~V~~~~R~~~~~~~~~-----~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~~ 75 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGH-EVLAVVRDPQKAADRL-----GATVATLVKEPLVLTEADLDSVDAVVDALSVPWG 75 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHT-----CTTSEEEECCGGGCCHHHHTTCSEEEECCCCCTT
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC-EEEEEEeccccccccc-----CCCceEEecccccccHhhcccCCEEEECCccCCC
Confidence 57778863 232 4444555566 8999999987554321 1468999999988642111357999876543210
Q ss_pred cCCCCChhhHHHHHHHHHHcccC-CcEEEEE
Q 025475 129 MCGTNAPISASQMLGEVSRLLKP-GGIYMLI 158 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~-gG~l~i~ 158 (252)
......-......+.+.++. |+.+++.
T Consensus 76 ---~~~~~~n~~~~~~l~~a~~~~~~~~v~~ 103 (224)
T 3h2s_A 76 ---SGRGYLHLDFATHLVSLLRNSDTLAVFI 103 (224)
T ss_dssp ---SSCTHHHHHHHHHHHHTCTTCCCEEEEE
T ss_pred ---cchhhHHHHHHHHHHHHHHHcCCcEEEE
Confidence 01112233344555555544 4555554
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=82.03 E-value=6.6 Score=30.12 Aligned_cols=70 Identities=17% Similarity=0.153 Sum_probs=44.6
Q ss_pred CCCcEEEEcccC--cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCC-eEEEccccCCCCCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGN--AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQL-KYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~--G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v-~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
.+++||-.|+.. |. ++..|++.|. +|++++.++...+.... .++ +++.+|+.+.....-+..|+|+.+..
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~-~V~~~~R~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag 93 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGH-EPVAMVRNEEQGPELRE-----RGASDIVVANLEEDFSHAFASIDAVVFAAG 93 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSGGGHHHHHH-----TTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCC-eEEEEECChHHHHHHHh-----CCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence 356899888743 32 4455556676 89999998875544332 257 88999987211011236899997654
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=81.87 E-value=0.91 Score=38.28 Aligned_cols=99 Identities=11% Similarity=0.201 Sum_probs=52.4
Q ss_pred CCcEEEEcccC-cHhHHHHH-HcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 50 SSRVLMVGCGN-ALMSEDMV-KDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 50 ~~~vLD~G~G~-G~~~~~l~-~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
+.+|+-+|+|. |......+ ..|. +|+++|.++..++.+++.... .+.....+..++... -..+|+|+..-....
T Consensus 166 ~~~V~ViGaG~iG~~~a~~l~~~Ga-~V~~~d~~~~~~~~~~~~~g~--~~~~~~~~~~~l~~~-~~~~DvVi~~~g~~~ 241 (369)
T 2eez_A 166 PASVVILGGGTVGTNAAKIALGMGA-QVTILDVNHKRLQYLDDVFGG--RVITLTATEANIKKS-VQHADLLIGAVLVPG 241 (369)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTT--SEEEEECCHHHHHHH-HHHCSEEEECCC---
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHHhcCc--eEEEecCCHHHHHHH-HhCCCEEEECCCCCc
Confidence 46899999863 44333333 3366 899999999877776654321 111111111111100 125899986433221
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
. ..+.-+.+++.+.|++||.++...
T Consensus 242 ~-------~~~~li~~~~l~~mk~gg~iV~v~ 266 (369)
T 2eez_A 242 A-------KAPKLVTRDMLSLMKEGAVIVDVA 266 (369)
T ss_dssp -----------CCSCHHHHTTSCTTCEEEECC
T ss_pred c-------ccchhHHHHHHHhhcCCCEEEEEe
Confidence 0 111112456677889999877644
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.79 E-value=3.2 Score=34.77 Aligned_cols=95 Identities=15% Similarity=0.173 Sum_probs=56.3
Q ss_pred CCCCCcEEEEc-cc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCeeEEEe
Q 025475 47 IPTSSRVLMVG-CG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G-~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~ 121 (252)
+.++.+||-.| +| .|..+..+++. |. +|++++ +++-.+.+++. +.-.++..+-.+... .....+|+|+.
T Consensus 181 ~~~g~~VlV~Ga~G~vG~~~~qla~~~Ga-~Vi~~~-~~~~~~~~~~l----Ga~~v~~~~~~~~~~~~~~~~g~D~vid 254 (375)
T 2vn8_A 181 NCTGKRVLILGASGGVGTFAIQVMKAWDA-HVTAVC-SQDASELVRKL----GADDVIDYKSGSVEEQLKSLKPFDFILD 254 (375)
T ss_dssp TCTTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEE-CGGGHHHHHHT----TCSEEEETTSSCHHHHHHTSCCBSEEEE
T ss_pred cCCCCEEEEECCCCHHHHHHHHHHHhCCC-EEEEEe-ChHHHHHHHHc----CCCEEEECCchHHHHHHhhcCCCCEEEE
Confidence 55778999999 34 58888777776 55 899998 66666666443 111222211111100 01246999986
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.-. .....+....++|+++|.++...
T Consensus 255 ~~g------------~~~~~~~~~~~~l~~~G~iv~~g 280 (375)
T 2vn8_A 255 NVG------------GSTETWAPDFLKKWSGATYVTLV 280 (375)
T ss_dssp SSC------------TTHHHHGGGGBCSSSCCEEEESC
T ss_pred CCC------------ChhhhhHHHHHhhcCCcEEEEeC
Confidence 422 11124566778899999987754
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=81.78 E-value=0.71 Score=39.11 Aligned_cols=100 Identities=13% Similarity=0.211 Sum_probs=54.0
Q ss_pred CCCcEEEEcccC-cHhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
++.+|+-+|+|. |......+. .|. +|+++|.++..++.+++.+.. .+.....+..++... -..+|+|+..-...
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga-~V~~~d~~~~~l~~~~~~~g~--~~~~~~~~~~~l~~~-l~~aDvVi~~~~~p 242 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGA-TVTVLDINIDKLRQLDAEFCG--RIHTRYSSAYELEGA-VKRADLVIGAVLVP 242 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTTT--SSEEEECCHHHHHHH-HHHCSEEEECCCCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhcCC--eeEeccCCHHHHHHH-HcCCCEEEECCCcC
Confidence 456899999963 544444443 356 899999999888777664421 222211111111100 12579998632111
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.. +.+.-+.++..+.|++||.++.+.
T Consensus 243 ~~-------~t~~li~~~~l~~mk~g~~iV~va 268 (377)
T 2vhw_A 243 GA-------KAPKLVSNSLVAHMKPGAVLVDIA 268 (377)
T ss_dssp TS-------CCCCCBCHHHHTTSCTTCEEEEGG
T ss_pred CC-------CCcceecHHHHhcCCCCcEEEEEe
Confidence 00 000111345667789999876544
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=81.76 E-value=25 Score=30.54 Aligned_cols=100 Identities=13% Similarity=0.145 Sum_probs=59.1
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHH-HHHHHHhh----cCC-----------CCCeEEEccccCCCCCC
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVA-IDMMKMKY----EEI-----------PQLKYLQMDVRDMSFFE 112 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~-i~~a~~~~----~~~-----------~~v~~~~~d~~~~~~~~ 112 (252)
.+|.-||+|. +.++..++..|. +|++.|++++. ....+..+ +.. .++++ ..|... .
T Consensus 55 ~kVaVIGaG~MG~~IA~~la~aG~-~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~-t~dl~a---l- 128 (460)
T 3k6j_A 55 NSVAIIGGGTMGKAMAICFGLAGI-ETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKI-TSDFHK---L- 128 (460)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEE-ESCGGG---C-
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEE-eCCHHH---H-
Confidence 4789999995 456777777777 99999999872 11111111 110 12222 223321 1
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
...|+|+..-+ .+.+....+++++...++++.++...+-..+..
T Consensus 129 -~~aDlVIeAVp--------e~~~vk~~v~~~l~~~~~~~aIlasnTSsl~i~ 172 (460)
T 3k6j_A 129 -SNCDLIVESVI--------EDMKLKKELFANLENICKSTCIFGTNTSSLDLN 172 (460)
T ss_dssp -TTCSEEEECCC--------SCHHHHHHHHHHHHTTSCTTCEEEECCSSSCHH
T ss_pred -ccCCEEEEcCC--------CCHHHHHHHHHHHHhhCCCCCEEEecCCChhHH
Confidence 35899996422 233556788899999999887765434333433
|
| >3ksu_A 3-oxoacyl-acyl carrier protein reductase; structural genomics, PSI-2, dehydrogenase, protein structure initiative; 2.30A {Oenococcus oeni psu-1} | Back alignment and structure |
|---|
Probab=81.67 E-value=5 Score=31.68 Aligned_cols=109 Identities=13% Similarity=0.120 Sum_probs=62.0
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCC---HHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDIS---SVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------ED 113 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s---~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~ 113 (252)
+.++|-.|++.|. .+..+++.|. +|+.++.+ .+.++.....+.. ..++.++.+|+.+.... .-
T Consensus 11 ~k~vlVTGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 89 (262)
T 3ksu_A 11 NKVIVIAGGIKNLGALTAKTFALESV-NLVLHYHQAKDSDTANKLKDELEDQGAKVALYQSDLSNEEEVAKLFDFAEKEF 89 (262)
T ss_dssp TCEEEEETCSSHHHHHHHHHHTTSSC-EEEEEESCGGGHHHHHHHHHHHHTTTCEEEEEECCCCSHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCccCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 5578888887653 4455555666 78888764 3444444444432 34688899999875311 11
Q ss_pred CCeeEEEeccchhhh-cCCCCChhhHH-----------HHHHHHHHcccCCcEEEEEE
Q 025475 114 ESFDAVIDKGTLDSL-MCGTNAPISAS-----------QMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~-~~~~~~~~~~~-----------~~l~~~~~~L~~gG~l~i~~ 159 (252)
+..|+++.+...... .....+.++.. .+++.+...|+++|.++.+.
T Consensus 90 g~iD~lvnnAg~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~is 147 (262)
T 3ksu_A 90 GKVDIAINTVGKVLKKPIVETSEAEFDAMDTINNKVAYFFIKQAAKHMNPNGHIITIA 147 (262)
T ss_dssp CSEEEEEECCCCCCSSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEEEEEC
T ss_pred CCCCEEEECCCCCCCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhhcCCCEEEEEe
Confidence 478999987653321 00111233332 23345556666778777654
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=81.49 E-value=8.2 Score=25.64 Aligned_cols=69 Identities=19% Similarity=0.236 Sum_probs=43.3
Q ss_pred CCcEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC--CCCCeeEEEecc
Q 025475 50 SSRVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF--EDESFDAVIDKG 123 (252)
Q Consensus 50 ~~~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~--~~~~~D~v~~~~ 123 (252)
.++|+-+|+|. |. .+..+...|..+++++|.++..++.... ..+.++..|+.+.... .-..+|+|+..-
T Consensus 5 ~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~ 77 (118)
T 3ic5_A 5 RWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNR-----MGVATKQVDAKDEAGLAKALGGFDAVISAA 77 (118)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHT-----TTCEEEECCTTCHHHHHHHTTTCSEEEECS
T ss_pred cCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-----CCCcEEEecCCCHHHHHHHHcCCCEEEECC
Confidence 45799999952 33 3334445563489999999987666551 3467777777653211 113589998654
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=81.47 E-value=10 Score=30.29 Aligned_cols=84 Identities=14% Similarity=0.201 Sum_probs=53.2
Q ss_pred CcEEEEcc-cC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 51 SRVLMVGC-GN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 51 ~~vLD~G~-G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
++|.-+|+ |. | .++..+...|. +|+++|.+++.++.+.+. + +.. .+.. ..-...|+|+..-
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~-~V~~~~r~~~~~~~~~~~----g-~~~-----~~~~-~~~~~aDvVi~av---- 75 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAH-HLAAIEIAPEGRDRLQGM----G-IPL-----TDGD-GWIDEADVVVLAL---- 75 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSS-EEEEECCSHHHHHHHHHT----T-CCC-----CCSS-GGGGTCSEEEECS----
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCC-EEEEEECCHHHHHHHHhc----C-CCc-----CCHH-HHhcCCCEEEEcC----
Confidence 47999999 84 3 45566666665 899999999877766542 1 221 1221 1113589998643
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
++.....+++++...++++..++
T Consensus 76 ------~~~~~~~v~~~l~~~l~~~~ivv 98 (286)
T 3c24_A 76 ------PDNIIEKVAEDIVPRVRPGTIVL 98 (286)
T ss_dssp ------CHHHHHHHHHHHGGGSCTTCEEE
T ss_pred ------CchHHHHHHHHHHHhCCCCCEEE
Confidence 23445777888888887766443
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=81.45 E-value=15 Score=29.10 Aligned_cols=89 Identities=17% Similarity=0.204 Sum_probs=53.4
Q ss_pred cEEEEcccC-c-HhHHHHHHcCC-CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCC-CeeEEEeccchhh
Q 025475 52 RVLMVGCGN-A-LMSEDMVKDGY-EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDE-SFDAVIDKGTLDS 127 (252)
Q Consensus 52 ~vLD~G~G~-G-~~~~~l~~~~~-~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~-~~D~v~~~~~l~~ 127 (252)
+|.-+|+|. | .++..+...|. .+|+++|.+++.++.+++. +.......|..+. -. ..|+|+..-.
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~----g~~~~~~~~~~~~----~~~~aDvVilavp--- 71 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDL----GIIDEGTTSIAKV----EDFSPDFVMLSSP--- 71 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHT----TSCSEEESCGGGG----GGTCCSEEEECSC---
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHC----CCcccccCCHHHH----hcCCCCEEEEcCC---
Confidence 678889884 3 34555555553 3799999999877766543 1111111222221 12 5899986532
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
+.....++.++...++++..++..
T Consensus 72 -------~~~~~~v~~~l~~~l~~~~iv~~~ 95 (281)
T 2g5c_A 72 -------VRTFREIAKKLSYILSEDATVTDQ 95 (281)
T ss_dssp -------HHHHHHHHHHHHHHSCTTCEEEEC
T ss_pred -------HHHHHHHHHHHHhhCCCCcEEEEC
Confidence 234457778888888888765543
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=81.05 E-value=2.3 Score=33.50 Aligned_cols=76 Identities=11% Similarity=0.208 Sum_probs=53.1
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC--------CCCCe
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF--------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~--------~~~~~ 116 (252)
.+.++|-.|++.|. ++..+++.|. +|++++.++..++.....+.. ..++.++.+|+.+.... ..+..
T Consensus 6 ~~k~vlVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~g~i 84 (252)
T 3h7a_A 6 RNATVAVIGAGDYIGAEIAKKFAAEGF-TVFAGRRNGEKLAPLVAEIEAAGGRIVARSLDARNEDEVTAFLNAADAHAPL 84 (252)
T ss_dssp CSCEEEEECCSSHHHHHHHHHHHHTTC-EEEEEESSGGGGHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHSCE
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCeEEEEECcCCCHHHHHHHHHHHHhhCCc
Confidence 35678888887663 6666777776 899999998776666555533 34688899999875311 01578
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+++.+...
T Consensus 85 d~lv~nAg~ 93 (252)
T 3h7a_A 85 EVTIFNVGA 93 (252)
T ss_dssp EEEEECCCC
T ss_pred eEEEECCCc
Confidence 999987654
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=80.96 E-value=4.1 Score=32.01 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=52.8
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
.++++|-.|++.|. ++..+++.|. +|+.+|.++...+.....+.. ..++.++.+|+.+.... ..+.
T Consensus 11 ~~k~vlVTGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~ 89 (256)
T 3gaf_A 11 NDAVAIVTGAAAGIGRAIAGTFAKAGA-SVVVTDLKSEGAEAVAAAIRQAGGKAIGLECNVTDEQHREAVIKAALDQFGK 89 (256)
T ss_dssp TTCEEEECSCSSHHHHHHHHHHHHHTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCcEEEEECCCCCHHHHHHHHHHHHHHcCC
Confidence 35578888887653 5666667776 899999998877766665533 34788899999875311 1146
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+...
T Consensus 90 id~lv~nAg~ 99 (256)
T 3gaf_A 90 ITVLVNNAGG 99 (256)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999987654
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=80.90 E-value=2.3 Score=37.37 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=54.7
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
..++.+|+-+|+|. |......++. |. +|+++|.++.-...++.. .+.. .++.+. . ...|+|+..-.
T Consensus 271 ~l~GktV~IiG~G~IG~~~A~~lka~Ga-~Viv~d~~~~~~~~A~~~-----Ga~~--~~l~e~--l--~~aDvVi~atg 338 (494)
T 3ce6_A 271 LIGGKKVLICGYGDVGKGCAEAMKGQGA-RVSVTEIDPINALQAMME-----GFDV--VTVEEA--I--GDADIVVTATG 338 (494)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHT-----TCEE--CCHHHH--G--GGCSEEEECSS
T ss_pred CCCcCEEEEEccCHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHc-----CCEE--ecHHHH--H--hCCCEEEECCC
Confidence 45678999999974 5544444443 55 899999999876666543 1222 222222 1 25899987532
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
-.++ - -.+..+.|++||+++.+..
T Consensus 339 t~~~-------i-----~~~~l~~mk~ggilvnvG~ 362 (494)
T 3ce6_A 339 NKDI-------I-----MLEHIKAMKDHAILGNIGH 362 (494)
T ss_dssp SSCS-------B-----CHHHHHHSCTTCEEEECSS
T ss_pred CHHH-------H-----HHHHHHhcCCCcEEEEeCC
Confidence 2221 1 1245567899999876554
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=80.77 E-value=4.5 Score=31.72 Aligned_cols=75 Identities=15% Similarity=0.333 Sum_probs=52.8
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC----CCCCeEEEccccCCCCC---------CC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE----IPQLKYLQMDVRDMSFF---------ED 113 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~----~~~v~~~~~d~~~~~~~---------~~ 113 (252)
+.++|-.|++.|. ++..+++.|. +|+.++.++..++...+.+.. ..++.++.+|+.+.... ..
T Consensus 7 ~k~~lVTGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 85 (250)
T 3nyw_A 7 KGLAIITGASQGIGAVIAAGLATDGY-RVVLIARSKQNLEKVHDEIMRSNKHVQEPIVLPLDITDCTKADTEIKDIHQKY 85 (250)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHHTC-EEEEEESCHHHHHHHHHHHHHHCTTSCCCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhccccCcceEEeccCCCHHHHHHHHHHHHHhc
Confidence 5578888887653 6666677776 899999998877766655422 14688999999875311 11
Q ss_pred CCeeEEEeccch
Q 025475 114 ESFDAVIDKGTL 125 (252)
Q Consensus 114 ~~~D~v~~~~~l 125 (252)
+..|+++.+...
T Consensus 86 g~iD~lvnnAg~ 97 (250)
T 3nyw_A 86 GAVDILVNAAAM 97 (250)
T ss_dssp CCEEEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 478999987654
|
| >2bgk_A Rhizome secoisolariciresinol dehydrogenase; oxidoreductase; 1.6A {Podophyllum peltatum} SCOP: c.2.1.2 PDB: 2bgl_A* 2bgm_A* | Back alignment and structure |
|---|
Probab=80.77 E-value=6.9 Score=30.82 Aligned_cols=74 Identities=12% Similarity=0.148 Sum_probs=49.1
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCC---------CCCee
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE---------DESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~---------~~~~D 117 (252)
+.+||-.|++.|. ++..+++.|. +|++++.++...+.....+....++.++.+|+.+..... .+..|
T Consensus 16 ~k~vlITGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 94 (278)
T 2bgk_A 16 DKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKLD 94 (278)
T ss_dssp TCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEcCChhHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHHHHHHHcCCCC
Confidence 4578888876542 5555666676 899999998766555444433236888999998753110 13689
Q ss_pred EEEeccc
Q 025475 118 AVIDKGT 124 (252)
Q Consensus 118 ~v~~~~~ 124 (252)
+|+.+..
T Consensus 95 ~li~~Ag 101 (278)
T 2bgk_A 95 IMFGNVG 101 (278)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 9997654
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=80.76 E-value=5.4 Score=30.90 Aligned_cols=75 Identities=11% Similarity=0.173 Sum_probs=49.6
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC----C-----CCCee
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF----E-----DESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~----~-----~~~~D 117 (252)
++++|-.|++.| .++..+++.|. +|++++.++...+.....+....++.++.+|+.+.... . -+..|
T Consensus 6 ~k~vlVtGasggiG~~~a~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~id 84 (251)
T 1zk4_A 6 GKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS 84 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CcEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHhhccCceEEEECCCCCHHHHHHHHHHHHHHhCCCC
Confidence 457888887554 24555566676 89999999877666555543334688899998874311 0 13689
Q ss_pred EEEeccch
Q 025475 118 AVIDKGTL 125 (252)
Q Consensus 118 ~v~~~~~l 125 (252)
+|+.+...
T Consensus 85 ~li~~Ag~ 92 (251)
T 1zk4_A 85 TLVNNAGI 92 (251)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99887543
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=80.75 E-value=5.3 Score=31.74 Aligned_cols=70 Identities=10% Similarity=0.155 Sum_probs=50.4
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--------CCCCCeeE
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--------FEDESFDA 118 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--------~~~~~~D~ 118 (252)
+.++|-.|++.|. ++..+++.|. +|+++|.++..++.....+. .++.++.+|+.+... ...+..|+
T Consensus 30 ~k~vlVTGas~GIG~aia~~l~~~G~-~Vi~~~r~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~~~~id~ 106 (281)
T 3ppi_A 30 GASAIVSGGAGGLGEATVRRLHADGL-GVVIADLAAEKGKALADELG--NRAEFVSTNVTSEDSVLAAIEAANQLGRLRY 106 (281)
T ss_dssp TEEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHTTSSEEEE
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCChHHHHHHHHHhC--CceEEEEcCCCCHHHHHHHHHHHHHhCCCCe
Confidence 4578888987653 5666677776 89999999987777666552 368899999987531 11246899
Q ss_pred EEec
Q 025475 119 VIDK 122 (252)
Q Consensus 119 v~~~ 122 (252)
++.+
T Consensus 107 lv~~ 110 (281)
T 3ppi_A 107 AVVA 110 (281)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 8877
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=80.66 E-value=8.9 Score=31.26 Aligned_cols=97 Identities=12% Similarity=0.165 Sum_probs=53.3
Q ss_pred CCCcEEEEcccC-c-HhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc-CCCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGN-A-LMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE-EIPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~-G-~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~-~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
+..+|.-+|+|. | ..+..++..+ ..+++.+|++++....+..... ..++++. ..|..++ ...|+|+....
T Consensus 13 ~~~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~-t~d~~~l-----~~aD~Vi~aag 86 (303)
T 2i6t_A 13 TVNKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEI-SKDLSAS-----AHSKVVIFTVN 86 (303)
T ss_dssp -CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEE-ESCGGGG-----TTCSEEEECCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEE-eCCHHHH-----CCCCEEEEcCC
Confidence 345899999985 3 3555555555 4589999999853323322221 1123443 2343222 25899987641
Q ss_pred ------------hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 125 ------------LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 125 ------------l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...+ +-..++++.+.+.. |++.+++.+
T Consensus 87 ~~~pG~tR~dl~~~n~-------~i~~~i~~~i~~~~-p~a~iiv~s 125 (303)
T 2i6t_A 87 SLGSSQSYLDVVQSNV-------DMFRALVPALGHYS-QHSVLLVAS 125 (303)
T ss_dssp C----CCHHHHHHHHH-------HHHHHHHHHHHHHT-TTCEEEECS
T ss_pred CCCCCCCHHHHHHHHH-------HHHHHHHHHHHHhC-CCeEEEEcC
Confidence 2222 34566677777765 899987744
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=80.50 E-value=4.4 Score=32.29 Aligned_cols=75 Identities=8% Similarity=0.130 Sum_probs=50.5
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
++++|-.|++.| .++..+++.|. +|++++.++..++...+.+...+++.++.+|+.+.... ..+..|
T Consensus 29 ~k~vlVTGas~gIG~aia~~L~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~~g~iD 107 (276)
T 2b4q_A 29 GRIALVTGGSRGIGQMIAQGLLEAGA-RVFICARDAEACADTATRLSAYGDCQAIPADLSSEAGARRLAQALGELSARLD 107 (276)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHTTSSCEEECCCCTTSHHHHHHHHHHHHHHCSCCS
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCceEEEEeeCCCHHHHHHHHHHHHHhcCCCC
Confidence 457888888655 25556666676 89999999877666555554333677888888774311 124689
Q ss_pred EEEeccch
Q 025475 118 AVIDKGTL 125 (252)
Q Consensus 118 ~v~~~~~l 125 (252)
+++.+...
T Consensus 108 ~lvnnAg~ 115 (276)
T 2b4q_A 108 ILVNNAGT 115 (276)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 99987653
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=80.38 E-value=4.6 Score=31.33 Aligned_cols=75 Identities=13% Similarity=0.257 Sum_probs=52.4
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCC---------CCCCCe
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF---------FEDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~---------~~~~~~ 116 (252)
++++|-.|++.| .++..+++.|. +|++++.++...+.....+.. ..++.++.+|+.+... -..+..
T Consensus 5 ~k~vlITGas~gIG~~~a~~l~~~G~-~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 83 (247)
T 3lyl_A 5 EKVALVTGASRGIGFEVAHALASKGA-TVVGTATSQASAEKFENSMKEKGFKARGLVLNISDIESIQNFFAEIKAENLAI 83 (247)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHTTCCC
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 457888887655 35666677776 899999998877766665543 2478889999987531 123468
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+++.+...
T Consensus 84 d~li~~Ag~ 92 (247)
T 3lyl_A 84 DILVNNAGI 92 (247)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 999987653
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=80.37 E-value=5.2 Score=31.55 Aligned_cols=75 Identities=17% Similarity=0.251 Sum_probs=52.4
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
++++|-.|++.|. .+..+++.|. +|+.++.+++.++.+...+... .++.++.+|+.+.... .-+.
T Consensus 10 ~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 88 (262)
T 3pk0_A 10 GRSVVVTGGTKGIGRGIATVFARAGA-NVAVAGRSTADIDACVADLDQLGSGKVIGVQTDVSDRAQCDALAGRAVEEFGG 88 (262)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTSSSCEEEEECCTTSHHHHHHHHHHHHHHHSC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHhhCCCcEEEEEcCCCCHHHHHHHHHHHHHHhCC
Confidence 5578888876552 5566667776 8999999998877766665432 3688899999875311 1146
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+...
T Consensus 89 id~lvnnAg~ 98 (262)
T 3pk0_A 89 IDVVCANAGV 98 (262)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCC
Confidence 8999987653
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=80.26 E-value=4.8 Score=28.87 Aligned_cols=69 Identities=19% Similarity=0.221 Sum_probs=40.4
Q ss_pred CCCcEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEec
Q 025475 49 TSSRVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~ 122 (252)
++.+|+-+|+|. |. ++..+...|. +|+++|.++..++.++. . ..+..+.+|..+... ..-..+|+|+..
T Consensus 18 ~~~~v~IiG~G~iG~~la~~L~~~g~-~V~vid~~~~~~~~~~~---~-~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~ 91 (155)
T 2g1u_A 18 KSKYIVIFGCGRLGSLIANLASSSGH-SVVVVDKNEYAFHRLNS---E-FSGFTVVGDAAEFETLKECGMEKADMVFAF 91 (155)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCGGGGGGSCT---T-CCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHHHHHHHHh---c-CCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence 556899999874 44 3334444565 89999998865433221 1 234566666544210 112358988864
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=80.25 E-value=5.6 Score=31.66 Aligned_cols=75 Identities=12% Similarity=0.167 Sum_probs=52.2
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC----CCeEEEccccCCCCC---------CC
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP----QLKYLQMDVRDMSFF---------ED 113 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~----~v~~~~~d~~~~~~~---------~~ 113 (252)
++++|-.|++.| ..+..+++.|. +|+.+|.++...+...+.+...+ ++.++.+|+.+.... ..
T Consensus 11 ~k~vlVTGas~gIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 89 (281)
T 3svt_A 11 DRTYLVTGGGSGIGKGVAAGLVAAGA-SVMIVGRNPDKLAGAVQELEALGANGGAIRYEPTDITNEDETARAVDAVTAWH 89 (281)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTCCSSCEEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCCHHHHHHHHHHHHHHc
Confidence 567888888765 35666777776 89999999887776666554322 578889999875311 11
Q ss_pred CCeeEEEeccch
Q 025475 114 ESFDAVIDKGTL 125 (252)
Q Consensus 114 ~~~D~v~~~~~l 125 (252)
+..|+++.+...
T Consensus 90 g~id~lv~nAg~ 101 (281)
T 3svt_A 90 GRLHGVVHCAGG 101 (281)
T ss_dssp SCCCEEEECCCC
T ss_pred CCCCEEEECCCc
Confidence 468999987653
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=80.21 E-value=0.91 Score=38.17 Aligned_cols=100 Identities=11% Similarity=0.195 Sum_probs=54.9
Q ss_pred CCcEEEEcccC-cHhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 50 SSRVLMVGCGN-ALMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 50 ~~~vLD~G~G~-G~~~~~l~~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
+.+|+-+|+|. |..+...+. .|. +|+++|.+++-.+.+++.... .+.....+..++.. .-..+|+|+..-....
T Consensus 167 ~~~VlViGaGgvG~~aa~~a~~~Ga-~V~v~dr~~~r~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~DvVI~~~~~~~ 242 (361)
T 1pjc_A 167 PGKVVILGGGVVGTEAAKMAVGLGA-QVQIFDINVERLSYLETLFGS--RVELLYSNSAEIET-AVAEADLLIGAVLVPG 242 (361)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHHH-HHHTCSEEEECCCCTT
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCCHHHHHHHHHhhCc--eeEeeeCCHHHHHH-HHcCCCEEEECCCcCC
Confidence 36899999963 554444444 366 899999999888777665432 22222211111110 0125899986432211
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
. ..+.-+.+...+.|++||.++...+
T Consensus 243 ~-------~~~~li~~~~~~~~~~g~~ivdv~~ 268 (361)
T 1pjc_A 243 R-------RAPILVPASLVEQMRTGSVIVDVAV 268 (361)
T ss_dssp S-------SCCCCBCHHHHTTSCTTCEEEETTC
T ss_pred C-------CCCeecCHHHHhhCCCCCEEEEEec
Confidence 0 0000012345577899998776543
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=80.14 E-value=3.9 Score=32.25 Aligned_cols=76 Identities=7% Similarity=0.097 Sum_probs=52.2
Q ss_pred CCCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 49 TSSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 49 ~~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
.+.+||-.|++.| .++..+++.|. +|++++.++..++.....+.. ..++.++.+|+.+.... ..+.
T Consensus 28 ~~k~vlITGas~gIG~~la~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~g~ 106 (262)
T 3rkr_A 28 SGQVAVVTGASRGIGAAIARKLGSLGA-RVVLTARDVEKLRAVEREIVAAGGEAESHACDLSHSDAIAAFATGVLAAHGR 106 (262)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhCCceeEEEecCCCHHHHHHHHHHHHHhcCC
Confidence 3567888887655 25555666676 899999999877766665533 24688899999875311 1146
Q ss_pred eeEEEeccch
Q 025475 116 FDAVIDKGTL 125 (252)
Q Consensus 116 ~D~v~~~~~l 125 (252)
.|+++.+...
T Consensus 107 id~lv~~Ag~ 116 (262)
T 3rkr_A 107 CDVLVNNAGV 116 (262)
T ss_dssp CSEEEECCCC
T ss_pred CCEEEECCCc
Confidence 8999987654
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=80.03 E-value=5.2 Score=32.69 Aligned_cols=98 Identities=15% Similarity=0.180 Sum_probs=56.2
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHh---hc--CCCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMK---YE--EIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~---~~--~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++|+-+|+|. +.++..+++.|. +|+.++.++ .+..++. .. ..+..++....+...+......+|+|+..-
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~-~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilav 79 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGH-CVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCI 79 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTC-EEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEec
Confidence 4788999984 346666666665 899999986 2444443 11 112222211111111101123689999764
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
--+.+ ..+++.+...++++..++....+
T Consensus 80 K~~~~----------~~~l~~l~~~l~~~t~Iv~~~nG 107 (320)
T 3i83_A 80 KVVEG----------ADRVGLLRDAVAPDTGIVLISNG 107 (320)
T ss_dssp CCCTT----------CCHHHHHTTSCCTTCEEEEECSS
T ss_pred CCCCh----------HHHHHHHHhhcCCCCEEEEeCCC
Confidence 43333 45678888889888776655544
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 252 | ||||
| d2bzga1 | 229 | c.66.1.36 (A:17-245) Thiopurine S-methyltransferas | 3e-11 | |
| d1ri5a_ | 252 | c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransf | 3e-09 | |
| d1xvaa_ | 292 | c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Ra | 9e-09 | |
| d1pjza_ | 201 | c.66.1.36 (A:) Thiopurine S-methyltransferase {Pse | 5e-08 | |
| d2i6ga1 | 198 | c.66.1.44 (A:1-198) Putative methyltransferase Teh | 2e-07 | |
| d1p91a_ | 268 | c.66.1.33 (A:) rRNA methyltransferase RlmA {Escher | 3e-07 | |
| d1ve3a1 | 226 | c.66.1.43 (A:2-227) Hypothetical protein PH0226 {A | 2e-06 | |
| d2a14a1 | 257 | c.66.1.15 (A:5-261) Indolethylamine N-methyltransf | 4e-06 | |
| d1jqea_ | 280 | c.66.1.19 (A:) Histamine methyltransferase {Human | 1e-05 | |
| d2frna1 | 260 | c.66.1.47 (A:19-278) Hypothetical protein PH0793 { | 1e-05 | |
| d1y8ca_ | 246 | c.66.1.43 (A:) Putative methyltransferase CAC2371 | 2e-05 | |
| d1xtpa_ | 254 | c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa | 4e-05 | |
| d1xxla_ | 234 | c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus | 7e-05 | |
| d2avna1 | 246 | c.66.1.41 (A:1-246) Hypothetical methyltransferase | 1e-04 | |
| d2gh1a1 | 281 | c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bac | 1e-04 | |
| d1wzna1 | 251 | c.66.1.43 (A:1-251) Hypothetical methyltransferase | 3e-04 | |
| d1nkva_ | 245 | c.66.1.21 (A:) Hypothetical Protein YjhP {Escheric | 3e-04 | |
| d1zx0a1 | 229 | c.66.1.16 (A:8-236) Guanidinoacetate methyltransfe | 5e-04 | |
| d1vl5a_ | 231 | c.66.1.41 (A:) Hypothetical protein BH2331 {Bacill | 6e-04 | |
| d2fyta1 | 311 | c.66.1.6 (A:238-548) Protein arginine N-methyltran | 9e-04 | |
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 0.002 | |
| d1g6q1_ | 328 | c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Ba | 0.004 |
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.2 bits (142), Expect = 3e-11
Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 17/166 (10%)
Query: 18 YWNARYVQEGGSFDWYQRYSALRPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDGYEDI 75
W ++V +F Q + L+ + ++ + RV CG A+ + G+ +
Sbjct: 12 EWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SV 70
Query: 76 VNIDISSVAIDMMKMKYEEIPQLKYL--------------QMDVRDMSFFEDESFDAVID 121
V ++IS + I + + + + + S F+ +
Sbjct: 71 VGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKF 130
Query: 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARM 167
D P + LL Y+L +
Sbjct: 131 DMIWDRGALVAINPGDRKCYADTMFSLLGKKFQYLLCVLSYDPTKH 176
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Score = 53.8 bits (128), Expect = 3e-09
Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 3/150 (2%)
Query: 42 FVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYL 101
+R Y VL +GCG + G + +DI+ V+I+ +++ + + +
Sbjct: 17 LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKV 76
Query: 102 QMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161
+D + + S + S ++R L+PGG +++
Sbjct: 77 FFRAQDSYGRHMDLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTV-- 134
Query: 162 DPKARMIHLKWKVYNWKIELYIIARPGFEK 191
P +I ++K + Y I E
Sbjct: 135 -PSRDVILERYKQGRMSNDFYKIELEKMED 163
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 292 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 52.6 bits (125), Expect = 9e-09
Identities = 18/140 (12%), Positives = 49/140 (35%), Gaps = 10/140 (7%)
Query: 31 DWYQRYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM 88
D R + + ++ + RVL V CG + S +V++G+ + +
Sbjct: 36 DTRSRTAEYKAWLLGLLRQHGCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYAL 95
Query: 89 KMKYEEIPQLKYLQMDVRDMSF--------FEDESFDAVIDKGTLDSLMCGTNAPISASQ 140
K ++ + + + + + ++ D + + L
Sbjct: 96 KERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRL 155
Query: 141 MLGEVSRLLKPGGIYMLITY 160
L ++ +++PGG+ ++
Sbjct: 156 ALKNIASMVRPGGLLVIDHR 175
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Score = 49.3 bits (116), Expect = 5e-08
Identities = 23/164 (14%), Positives = 52/164 (31%), Gaps = 17/164 (10%)
Query: 41 PFVRKYIPT-----SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAID--------- 86
+++Y + +RVL+ CG + + GY +V ++S A++
Sbjct: 7 KDLQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQ 65
Query: 87 MMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVS 146
+ +++ FF + D D + + +
Sbjct: 66 PHITSQGDFKVYAAPGIEIWCGDFFALTARDIGHCAAFYDRAAMIALPADMRERYVQHLE 125
Query: 147 RLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFE 190
L+ +LIT +A + + V L+ + +E
Sbjct: 126 ALMPQACSGLLITLEYDQALLEGPPFSVPQT--WLHRVMSGNWE 167
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Score = 48.0 bits (113), Expect = 2e-07
Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 15/149 (10%)
Query: 15 DALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYED 74
D Y+ +Y D + P R L +GCGN S + +GY+
Sbjct: 5 DENYFTEKYGLTRTHSDVLAAAKVVAP---------GRTLDLGCGNGRNSLYLAANGYDV 55
Query: 75 IVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNA 134
D + ++ ++ V + D +D ++ + L
Sbjct: 56 T-AWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLTFDGEYDFILSTVVMMFL-----E 109
Query: 135 PISASQMLGEVSRLLKPGGIYMLITYGDP 163
+ ++ + R KPGG +++ D
Sbjct: 110 AQTIPGLIANMQRCTKPGGYNLIVAAMDT 138
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} Length = 268 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Score = 48.0 bits (113), Expect = 3e-07
Identities = 25/181 (13%), Positives = 48/181 (26%), Gaps = 20/181 (11%)
Query: 11 YNYGDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD 70
+ R + G + + + + ++ VL +GCG +
Sbjct: 47 PGDSAEMMQARRAFLDAGHYQPLRDAIVAQ-LRERLDDKATAVLDIGCGEGYYTHAFADA 105
Query: 71 GYE-DIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129
E +D+ + + + F D S DA+I
Sbjct: 106 LPEITTFGLDV----SKVAIKAAAKRYPQVTFCVASSHRLPFSDTSMDAIIRIYAP---- 157
Query: 130 CGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGF 189
E++R++KPGG + T G + + GF
Sbjct: 158 ----------CKAEELARVVKPGGWVITATPGPRHLMELKGLIYNEVHLHAPHAEQLEGF 207
Query: 190 E 190
Sbjct: 208 T 208
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 45.1 bits (105), Expect = 2e-06
Identities = 34/143 (23%), Positives = 63/143 (44%), Gaps = 7/143 (4%)
Query: 29 SFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM 88
S ++ R L P + KY+ +VL + CG S + G+E + +
Sbjct: 17 SQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAR 76
Query: 89 KMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRL 148
+ ++++ D R + FED++FD VI ++ P+ +Q+ EV R+
Sbjct: 77 EYAKSRESNVEFIVGDARKL-SFEDKTFDYVIFIDSIVHF-----EPLELNQVFKEVRRV 130
Query: 149 LKPGGIYMLITYGDPKARMIHLK 171
LKP G ++ + D + + LK
Sbjct: 131 LKPSG-KFIMYFTDLRELLPRLK 152
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} Length = 257 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.3 bits (103), Expect = 4e-06
Identities = 26/215 (12%), Positives = 58/215 (26%), Gaps = 45/215 (20%)
Query: 18 YWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSS----RVLMVGCGNALMSEDMVKDGYE 73
Y Y +G + + K ++ +G G + D ++
Sbjct: 16 YLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQ 75
Query: 74 DIVNIDISSVAIDMMKMKYEEIP--------------------QLKYLQMDVRDMSF--- 110
DI D + + ++ ++ P + + + +R
Sbjct: 76 DITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVL 135
Query: 111 ------------FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158
D V+ ++ C +A L ++ LLKPGG +
Sbjct: 136 KCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAY---RAALCNLASLLKPGGHLVTT 192
Query: 159 TY-GDPKARMIHLKWKVYNWKIELY--IIARPGFE 190
P + ++ + + GF+
Sbjct: 193 VTLRLPSYMVGKREFSCVALEKGEVEQAVLDAGFD 227
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 280 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (101), Expect = 1e-05
Identities = 22/187 (11%), Positives = 55/187 (29%), Gaps = 37/187 (19%)
Query: 22 RYVQEGGSF-DWYQRYSALRPFVRKYIP----------TSSRVLMVGCGNALMSEDMVKD 70
+YV+ F + + ++ F+ K +P + ++L +G G + ++
Sbjct: 2 KYVESFRRFLNHSTEHQCMQEFMDKKLPGIIGRIGDTKSEIKILSIGGGAGEIDLQILSK 61
Query: 71 GYEDIVNIDISSVAIDMMKMKYEE-----------------IPQLKYLQMDVRDMSFFED 113
+ I++ ++ + + + + R + E
Sbjct: 62 VQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121
Query: 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHLKWK 173
+ +D + L + L LL ++I + L WK
Sbjct: 122 QKWDFIHMIQMLYYVK-------DIPATLKFFHSLLGTNAKMLIIVV-SGSSGWDKL-WK 172
Query: 174 VYNWKIE 180
Y +
Sbjct: 173 KYGSRFP 179
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} Length = 260 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Score = 43.2 bits (101), Expect = 1e-05
Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 16/126 (12%)
Query: 32 WYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMK 91
+ R + K V+ + G +S + G ++ I+ +
Sbjct: 90 FSPANVKERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVEN 149
Query: 92 YEEIP---QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRL 148
++ MD RD F + D ++ + + + + +
Sbjct: 150 IHLNKVEDRMSAYNMDNRD--FPGENIADRIL-----------MGYVVRTHEFIPKALSI 196
Query: 149 LKPGGI 154
K G I
Sbjct: 197 AKDGAI 202
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Score = 42.3 bits (98), Expect = 2e-05
Identities = 16/161 (9%), Positives = 41/161 (25%), Gaps = 5/161 (3%)
Query: 31 DWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKM 90
D+ + + + L + CG ++E++ + +
Sbjct: 19 DYKKWSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENK 78
Query: 91 KYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLK 150
+ + + D+ +++ + VS LK
Sbjct: 79 FRSQGLKPRLACQDISNLNINRKFDLITC-----CLDSTNYIIDSDDLKKYFKAVSNHLK 133
Query: 151 PGGIYMLITYGDPKARMIHLKWKVYNWKIELYIIARPGFEK 191
GG+++ K + E++ FE
Sbjct: 134 EGGVFIFDINSYYKLSQVLGNNDFNYDDDEVFYYWENQFED 174
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Score = 41.5 bits (96), Expect = 4e-05
Identities = 23/163 (14%), Positives = 48/163 (29%), Gaps = 13/163 (7%)
Query: 13 YGDAL-YWNARYVQEGGSFDWYQRYSAL-----RPFVRKYIPT-SSRVLMVGCGNALMSE 65
YG AL YW G + R F+ +SR L G G +++
Sbjct: 50 YGKALEYWRTVPATVSGVLGGMDHVHDVDIEGSRNFIASLPGHGTSRALDCGAGIGRITK 109
Query: 66 DMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125
+++ Y ++ ++ K + +P K++ + ++D ++
Sbjct: 110 NLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETA-TLPPNTYDLIV----- 163
Query: 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMI 168
+ + L P G R +
Sbjct: 164 IQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFL 206
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Length = 234 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Score = 40.7 bits (94), Expect = 7e-05
Identities = 19/113 (16%), Positives = 39/113 (34%), Gaps = 7/113 (6%)
Query: 52 RVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF 111
RVL +G G + E + +D + +++ +E S
Sbjct: 19 RVLDIGAGAGHTALAFSPYVQE-CIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP 77
Query: 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164
+ D T + + + EV+R+LK G ++L+ + P+
Sbjct: 78 FPDDSF---DIITCRYAAHHFSDV---RKAVREVARVLKQDGRFLLVDHYAPE 124
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} Length = 246 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Score = 40.1 bits (92), Expect = 1e-04
Identities = 19/142 (13%), Positives = 46/142 (32%), Gaps = 12/142 (8%)
Query: 19 WNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNI 78
Y + W + + F+ +Y+ RVL +G G S + + G+E ++
Sbjct: 12 IARAYDSMYETPKWKLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGFEVVLVD 71
Query: 79 DISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISA 138
+ + + + + K + +F + + +
Sbjct: 72 PSKEMLEVAREKGVKNVVEAKAEDLPFPSGAFEAVLAL------------GDVLSYVENK 119
Query: 139 SQMLGEVSRLLKPGGIYMLITY 160
+ E+ R+L P G+ +
Sbjct: 120 DKAFSEIRRVLVPDGLLIATVD 141
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 19/140 (13%), Positives = 39/140 (27%), Gaps = 10/140 (7%)
Query: 23 YVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYE--DIVNIDI 80
Y++ + Y + I ++ GCG + ++ E ID
Sbjct: 1 YLKNTRDLYYNDDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDS 60
Query: 81 SSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQ 140
+ + + +P D+ A+ L+ T
Sbjct: 61 GETLLAEARELFRLLPYDSEFLEGDATEIELNDKYDIAICH----AFLLHMTTPE----T 112
Query: 141 MLGEVSRLLKPGGIYMLITY 160
ML ++ +K GG +
Sbjct: 113 MLQKMIHSVKKGGKIICFEP 132
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Score = 38.9 bits (89), Expect = 3e-04
Identities = 21/142 (14%), Positives = 47/142 (33%), Gaps = 7/142 (4%)
Query: 16 ALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDI 75
A Y++ Y + + F RVL + CG + + ++ + GYE
Sbjct: 9 AEYYDTIYRRRIERVKAEIDF-VEEIFKEDAKREVRRVLDLACGTGIPTLELAERGYE-- 65
Query: 76 VNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAP 135
+ + + ++ + + +F D T+
Sbjct: 66 ----VVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIAFKNEFDAVTMFFSTIMYFDE 121
Query: 136 ISASQMLGEVSRLLKPGGIYML 157
++ +V+ LKPGG+++
Sbjct: 122 EDLRKLFSKVAEALKPGGVFIT 143
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Length = 245 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Score = 38.8 bits (89), Expect = 3e-04
Identities = 25/135 (18%), Positives = 47/135 (34%), Gaps = 11/135 (8%)
Query: 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVR 106
+ +R+L +G G+ M +D ID+SS+ K + EE+ + +
Sbjct: 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHN 90
Query: 107 DM-SFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG---D 162
D + +E D + + +++ LKPGGI ++
Sbjct: 91 DAAGYVANEKCDVAA---CVGATWIAGGFA----GAEELLAQSLKPGGIMLIGEPYWRQL 143
Query: 163 PKARMIHLKWKVYNW 177
P I V +
Sbjct: 144 PATEEIAQACGVSST 158
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.1 bits (87), Expect = 5e-04
Identities = 19/152 (12%), Positives = 39/152 (25%), Gaps = 2/152 (1%)
Query: 42 FVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYL 101
RVL VG G A+ + + + ++ I+ + ++
Sbjct: 46 LAAAASSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIP 105
Query: 102 QMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT-Y 160
+ + L T + + RLLKPGG+
Sbjct: 106 LKGLWEDVAPTLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKPGGVLTYCNLT 165
Query: 161 GDPKARMIHLKWKVYNWKIELY-IIARPGFEK 191
+ ++ + GF +
Sbjct: 166 SWGELMKSKYSDITIMFEETQVPALLEAGFRR 197
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Score = 37.7 bits (86), Expect = 6e-04
Identities = 15/131 (11%), Positives = 41/131 (31%), Gaps = 7/131 (5%)
Query: 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVR 106
+ + VL V G ++ + +V D++ + + + E + +
Sbjct: 13 LKGNEEVLDVATGGGHVANAFAPFVKK-VVAFDLTEDILKVARAFIEGNGHQQVEYVQGD 71
Query: 107 DMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKAR 166
+ ++ + + + + E R+LK GG +L+ P+
Sbjct: 72 AEQMPFTDERFHIVTC------RIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPEND 125
Query: 167 MIHLKWKVYNW 177
+ +
Sbjct: 126 AFDVFYNYVEK 136
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} Length = 311 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.6 bits (86), Expect = 9e-04
Identities = 18/132 (13%), Positives = 44/132 (33%), Gaps = 9/132 (6%)
Query: 33 YQRYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAID--MM 88
R + R F+ + VL VGCG ++S K G + ++ +D S + +
Sbjct: 17 KIRTESYRDFIYQNPHIFKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDI 76
Query: 89 KMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRL 148
+ + ++ + ++ ++ + + + +L ++
Sbjct: 77 IRLNKLEDTITLIKGKIEEVHLPVEKVDVIIS-----EWMGYFLLFESMLDSVLYAKNKY 131
Query: 149 LKPGGIYMLITY 160
L GG
Sbjct: 132 LAKGGSVYPDIC 143
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.4 bits (83), Expect = 0.002
Identities = 24/185 (12%), Positives = 45/185 (24%), Gaps = 45/185 (24%)
Query: 18 YWNARYVQEGGSFDWYQRYSA-LRPFVRKYIPTSS----RVLMVGCGNALMSEDMVKDGY 72
Y Y G + + T ++ +G G + +
Sbjct: 18 YLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHF 77
Query: 73 EDIVNIDISSVAIDMMKMK-------YEEIPQLKYL------------------------ 101
EDI D V + + ++
Sbjct: 78 EDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRV 137
Query: 102 ------QMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIY 155
Q DA++ L+++ S + L ++ LL+PGG
Sbjct: 138 LPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPD---LASFQRALDHITTLLRPGGHL 194
Query: 156 MLITY 160
+LI
Sbjct: 195 LLIGA 199
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 328 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 35.6 bits (81), Expect = 0.004
Identities = 23/126 (18%), Positives = 47/126 (37%), Gaps = 9/126 (7%)
Query: 33 YQRYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKM 90
R + R + + VL VGCG ++S K G + ++ +D+SS+ ++
Sbjct: 20 TVRTLSYRNAIIQNKDLFKDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSSIIEMAKEL 79
Query: 91 KYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRL 148
++ L+ + D+ D +I + L+ + +L
Sbjct: 80 VELNGFSDKITLLRGKLEDV-HLPFPKVDIIISEWMGYFLLYESMMD----TVLYARDHY 134
Query: 149 LKPGGI 154
L GG+
Sbjct: 135 LVEGGL 140
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 252 | |||
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.88 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.88 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.87 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.87 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.84 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.84 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.84 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.83 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.83 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.82 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.82 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.81 | |
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.81 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.8 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.8 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.77 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.76 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.76 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.72 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.72 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.72 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.71 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.71 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.7 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.7 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.69 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.68 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.67 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.67 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.66 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.66 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.66 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.63 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.59 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.59 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.58 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.58 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.56 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 99.56 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.55 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.55 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.53 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.52 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 99.51 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.51 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.5 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 99.49 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 99.46 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 99.46 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.44 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 99.43 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.42 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 99.4 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 99.37 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 99.36 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 99.35 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 99.33 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 99.32 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 99.3 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 99.29 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 99.29 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 99.26 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 99.25 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 99.23 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 99.21 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 99.19 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 99.17 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 99.08 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 99.02 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 99.01 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 99.0 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.99 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.98 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 98.96 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.91 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.91 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.9 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 98.85 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.84 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 98.82 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 98.82 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.81 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 98.79 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.78 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 98.67 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 98.66 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.62 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 98.58 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 98.58 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 98.55 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 98.52 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 98.42 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 98.4 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 98.38 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 98.27 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 98.18 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 98.14 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 98.11 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.89 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 97.62 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 97.44 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 97.4 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 97.31 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 97.22 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 97.21 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 97.19 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 97.06 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 97.0 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 96.94 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 96.86 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 96.8 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 96.7 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 96.5 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 96.48 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 96.46 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 96.46 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 96.39 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.39 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.32 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.28 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 96.24 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 96.11 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 96.0 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.99 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 95.94 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 95.79 | |
| d1o9ga_ | 249 | rRNA methyltransferase AviRa {Streptomyces viridoc | 95.62 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.28 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 95.24 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.72 | |
| d1zkda1 | 365 | Hypothetical protein RPA4359 {Rhodopseudomonas pal | 94.66 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 93.97 | |
| d2uyoa1 | 297 | Putative methyltransferase ML2640 {Mycobacterium l | 93.96 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 93.83 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 93.82 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.53 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 93.42 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 93.12 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 93.0 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 92.92 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 92.8 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 92.79 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 92.74 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.65 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.47 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 92.09 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 92.08 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 92.01 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 92.0 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 91.92 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 91.81 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 91.66 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 91.37 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 91.21 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 90.98 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 90.86 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 90.54 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 90.51 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 90.43 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 90.14 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 89.98 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 89.54 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 89.26 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 89.11 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 88.93 | |
| d2py6a1 | 395 | Methyltransferase FkbM {Methylobacillus flagellatu | 87.98 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 87.14 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 86.78 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 86.28 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 86.0 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 85.84 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 85.84 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 85.78 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 85.59 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 85.56 | |
| d1rjda_ | 328 | Leucine carboxy methyltransferase Ppm1 {Baker's ye | 85.12 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 84.78 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 84.77 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 84.55 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 84.4 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 83.91 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 83.64 | |
| d2oo3a1 | 271 | Uncharacterized protein LPG1296 {Legionella pneumo | 83.43 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 83.37 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 83.23 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 82.67 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 82.6 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 82.28 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 82.19 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 81.96 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 81.68 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 81.1 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 80.9 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 80.9 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 80.49 |
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.88 E-value=2.7e-22 Score=158.87 Aligned_cols=119 Identities=29% Similarity=0.496 Sum_probs=105.3
Q ss_pred hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCC
Q 025475 37 SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDES 115 (252)
Q Consensus 37 ~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~ 115 (252)
..+.+++.+.++++.+|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++.... ..+.++++|+.+++ +++++
T Consensus 25 ~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~~~-~v~giD~S~~~i~~ak~~~~~~~~~~~~~~~d~~~l~-~~~~~ 102 (226)
T d1ve3a1 25 ETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYGF-EVVGVDISEDMIRKAREYAKSRESNVEFIVGDARKLS-FEDKT 102 (226)
T ss_dssp HHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEECCTTSCC-SCTTC
T ss_pred HHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhhhc-ccccccccccchhhhhhhhcccccccccccccccccc-ccCcC
Confidence 445667778888889999999999999999999875 8999999999999999887443 46889999999998 88899
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
||+|++..+++|+ +..++.++++++.++|||||.+++.....
T Consensus 103 fD~I~~~~~l~~~-----~~~d~~~~l~~i~~~LkpgG~lii~~~~~ 144 (226)
T d1ve3a1 103 FDYVIFIDSIVHF-----EPLELNQVFKEVRRVLKPSGKFIMYFTDL 144 (226)
T ss_dssp EEEEEEESCGGGC-----CHHHHHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred ceEEEEecchhhC-----ChhHHHHHHHHHHHHcCcCcEEEEEEcCc
Confidence 9999999999999 66789999999999999999998877543
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.3e-22 Score=160.22 Aligned_cols=142 Identities=18% Similarity=0.250 Sum_probs=120.3
Q ss_pred CChhhHHHHhccCCCceeeeccchhhHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHh
Q 025475 14 GDALYWNARYVQEGGSFDWYQRYSALRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMK 91 (252)
Q Consensus 14 ~~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~ 91 (252)
-..++|+++|.+....|.+-...+.+.+.+... .+++.+|||+|||+|..+..+++.|+ +|+|+|+|+.+|+.++++
T Consensus 8 ~~~e~W~~~~~~~~~~w~~~~~~~~l~~~~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~G~-~V~gvD~S~~ai~~a~~~ 86 (229)
T d2bzga1 8 LTLEEWQDKWVNGKTAFHQEQGHQLLKKHLDTFLKGKSGLRVFFPLCGKAVEMKWFADRGH-SVVGVEISELGIQEFFTE 86 (229)
T ss_dssp CCHHHHHHHHHHTCCTTCCTTCCHHHHHHHHHHHTTCCSCEEEETTCTTCTHHHHHHHTTC-EEEEECSCHHHHHHHHHH
T ss_pred CCHHHHHHHHccCCCCCccCCCCHHHHHHHHHhcCCCCCCEEEEeCCCCcHHHHHHHhCCC-cEEEEeCCHHHHHHHHHH
Confidence 356899999998877766655566677777664 45677999999999999999999988 899999999999999887
Q ss_pred hcC-------------------CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC
Q 025475 92 YEE-------------------IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG 152 (252)
Q Consensus 92 ~~~-------------------~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g 152 (252)
... ..++++.++|+.+++....+.||+|+...+++|+ +++++..+++++.++|+||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~~~fd~i~~~~~l~~~-----~~~~r~~~~~~~~~~Lkpg 161 (229)
T d2bzga1 87 QNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFDLPRTNIGKFDMIWDRGALVAI-----NPGDRKCYADTMFSLLGKK 161 (229)
T ss_dssp TTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGGGGGSCCCCEEEEEESSSTTTS-----CGGGHHHHHHHHHHTEEEE
T ss_pred hhccccccchhcccccceeeecCCcEEEEEcchhhccccccCceeEEEEEEEEEec-----cchhhHHHHHHHHhhcCCc
Confidence 532 1368899999988764667899999999999999 8899999999999999999
Q ss_pred cEEEEEEcC
Q 025475 153 GIYMLITYG 161 (252)
Q Consensus 153 G~l~i~~~~ 161 (252)
|++++..+.
T Consensus 162 G~~~l~~~~ 170 (229)
T d2bzga1 162 FQYLLCVLS 170 (229)
T ss_dssp EEEEEEEEE
T ss_pred ceEEEEEcc
Confidence 998887754
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.87 E-value=4.2e-22 Score=158.52 Aligned_cols=108 Identities=23% Similarity=0.368 Sum_probs=97.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
++++.+|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++... .++++++++|+.+++ +++++||+|++..+
T Consensus 13 l~~~~rVLDiGcG~G~~~~~l~~~~~-~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~-~~~~~fD~v~~~~~ 90 (231)
T d1vl5a_ 13 LKGNEEVLDVATGGGHVANAFAPFVK-KVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMP-FTDERFHIVTCRIA 90 (231)
T ss_dssp CCSCCEEEEETCTTCHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCC-SCTTCEEEEEEESC
T ss_pred CCCcCEEEEecccCcHHHHHHHHhCC-EEEEEECCHHHHhhhhhccccccccccccccccccccc-cccccccccccccc
Confidence 67888999999999999999999875 899999999999999988743 458999999999998 88999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++|+ .++.+++++++++|+|||++++.++..|
T Consensus 91 l~~~-------~d~~~~l~~~~r~LkpgG~l~i~~~~~~ 122 (231)
T d1vl5a_ 91 AHHF-------PNPASFVSEAYRVLKKGGQLLLVDNSAP 122 (231)
T ss_dssp GGGC-------SCHHHHHHHHHHHEEEEEEEEEEEEEBC
T ss_pred cccc-------CCHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 9999 8899999999999999999999876543
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.87 E-value=7.9e-22 Score=157.50 Aligned_cols=108 Identities=19% Similarity=0.348 Sum_probs=98.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGT 124 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~ 124 (252)
++++.+|||+|||+|.++..+++.+. +++|+|+|+.|++.|+++... .+++.++++|+.+++ +++++||+|++..+
T Consensus 14 ~~~~~rILDiGcGtG~~~~~la~~~~-~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~v~~~~~ 91 (234)
T d1xxla_ 14 CRAEHRVLDIGAGAGHTALAFSPYVQ-ECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLP-FPDDSFDIITCRYA 91 (234)
T ss_dssp CCTTCEEEEESCTTSHHHHHHGGGSS-EEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCC-SCTTCEEEEEEESC
T ss_pred CCCCCEEEEeCCcCcHHHHHHHHhCC-eEEEEeCChhhhhhhhhhhccccccccccccccccccc-ccccccceeeeece
Confidence 67899999999999999999999864 899999999999999998743 457999999999988 88999999999999
Q ss_pred hhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 125 LDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 125 l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
++|+ .++.+++++++++|||||++++.++..+
T Consensus 92 l~~~-------~d~~~~l~~~~r~LkpgG~~~~~~~~~~ 123 (234)
T d1xxla_ 92 AHHF-------SDVRKAVREVARVLKQDGRFLLVDHYAP 123 (234)
T ss_dssp GGGC-------SCHHHHHHHHHHHEEEEEEEEEEEECBC
T ss_pred eecc-------cCHHHHHHHHHHeeCCCcEEEEEEcCCC
Confidence 9999 8899999999999999999999876543
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=2.2e-21 Score=153.71 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=95.3
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.++.+|||+|||+|.++..++..+..+|+|||+|+.|++.|++++... ++++++++|+++++ +++++||+|++..++
T Consensus 59 ~~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~-~~~~~fD~I~~~~~l 137 (222)
T d2ex4a1 59 TGTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFT-PEPDSYDVIWIQWVI 137 (222)
T ss_dssp CCCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCC-CCSSCEEEEEEESCG
T ss_pred CCCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccccccccccccccccccc-ccccccccccccccc
Confidence 355689999999999999987776668999999999999999988542 36799999999988 778899999999999
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|+ +.++..+++++++++|+|||.+++.+..
T Consensus 138 ~h~-----~~~~~~~~l~~i~~~Lk~~G~~~i~~~~ 168 (222)
T d2ex4a1 138 GHL-----TDQHLAEFLRRCKGSLRPNGIIVIKDNM 168 (222)
T ss_dssp GGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred ccc-----hhhhhhhHHHHHHHhcCCcceEEEEEcc
Confidence 999 6677789999999999999999998754
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.84 E-value=5.3e-21 Score=153.20 Aligned_cols=110 Identities=22% Similarity=0.412 Sum_probs=96.4
Q ss_pred hhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCee
Q 025475 38 ALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 38 ~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D 117 (252)
.+..++...++++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++.. ..++++|+.+++ +++++||
T Consensus 31 ~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~giD~s~~~l~~a~~~~~----~~~~~~~~~~l~-~~~~~fD 104 (246)
T d2avna1 31 LIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQERGF-EVVLVDPSKEMLEVAREKGV----KNVVEAKAEDLP-FPSGAFE 104 (246)
T ss_dssp HHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTTTC-EEEEEESCHHHHHHHHHHTC----SCEEECCTTSCC-SCTTCEE
T ss_pred HHHHHHHHhcCCCCEEEEECCCCchhcccccccce-EEEEeecccccccccccccc----cccccccccccc-ccccccc
Confidence 34556677788888999999999999999999876 89999999999999999753 257889999998 8889999
Q ss_pred EEEec-cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 118 AVIDK-GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 118 ~v~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+|++. .++||+ .++.++++++.++|||||.+++..+
T Consensus 105 ~ii~~~~~~~~~-------~d~~~~l~~i~r~Lk~gG~~ii~~~ 141 (246)
T d2avna1 105 AVLALGDVLSYV-------ENKDKAFSEIRRVLVPDGLLIATVD 141 (246)
T ss_dssp EEEECSSHHHHC-------SCHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ceeeecchhhhh-------hhHHHHHHHHHhhcCcCcEEEEEEC
Confidence 99985 689999 7888999999999999999998774
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.84 E-value=3.3e-21 Score=155.62 Aligned_cols=107 Identities=14% Similarity=0.236 Sum_probs=96.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
+..+|||+|||+|.++..++..+..+|++||+|+.|++.|++++...+++++.++|+.+++ +++++||+|++..+++|+
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~~~~~~~~~~d~~~~~-~~~~~fD~I~~~~vl~hl 171 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAGMPVGKFILASMETAT-LPPNTYDLIVIQWTAIYL 171 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTTSSEEEEEESCGGGCC-CCSSCEEEEEEESCGGGS
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccccccceeEEccccccc-cCCCccceEEeecccccc
Confidence 4559999999999999998876555899999999999999999877677899999999988 778899999999999999
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++++..+++++++++|+|||.+++.+..
T Consensus 172 -----~d~d~~~~l~~~~~~LkpgG~iii~e~~ 199 (254)
T d1xtpa_ 172 -----TDADFVKFFKHCQQALTPNGYIFFKENC 199 (254)
T ss_dssp -----CHHHHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred -----chhhhHHHHHHHHHhcCCCcEEEEEecC
Confidence 7777889999999999999999998753
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.83 E-value=1.8e-20 Score=145.85 Aligned_cols=131 Identities=20% Similarity=0.351 Sum_probs=106.2
Q ss_pred CChhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc
Q 025475 14 GDALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 93 (252)
Q Consensus 14 ~~~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~ 93 (252)
-++.||.+.|...... ..+... .+.+++ .+|||+|||+|..+..++++|. +++++|+|+.|++.++++..
T Consensus 4 ~d~~~~~~~~~~~~~~-------~~~~~~-~~~~~~-grvLDiGcG~G~~~~~la~~g~-~v~gvD~s~~~l~~a~~~~~ 73 (198)
T d2i6ga1 4 RDENYFTEKYGLTRTH-------SDVLAA-AKVVAP-GRTLDLGCGNGRNSLYLAANGY-DVTAWDKNPASMANLERIKA 73 (198)
T ss_dssp CSHHHHHHHHCBCCCC-------HHHHHH-HTTSCS-CEEEEETCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred chHHHHhcccCCCCCH-------HHHHHH-cccCCC-CcEEEECCCCCHHHHHHHHHhh-hhccccCcHHHHHHHHHHhh
Confidence 4677888877655332 122222 233444 4999999999999999999986 89999999999999998875
Q ss_pred C--CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 94 E--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 94 ~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
. .+++++...|+.+.. .+++||+|++..+++|+ +++...+++++++++|+|||++++.+..
T Consensus 74 ~~~~~~~~~~~~d~~~~~--~~~~fD~I~~~~~~~~~-----~~~~~~~~l~~~~~~L~pgG~~~~~~~~ 136 (198)
T d2i6ga1 74 AEGLDNLQTDLVDLNTLT--FDGEYDFILSTVVMMFL-----EAQTIPGLIANMQRCTKPGGYNLIVAAM 136 (198)
T ss_dssp HTTCTTEEEEECCTTTCC--CCCCEEEEEEESCGGGS-----CTTHHHHHHHHHHHTEEEEEEEEEEEEB
T ss_pred hccccchhhhheeccccc--ccccccEEEEeeeeecC-----CHHHHHHHHHHHHHHcCCCcEEEEEEec
Confidence 3 346889999998886 46789999999999999 7788999999999999999999987754
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.83 E-value=3.3e-21 Score=158.06 Aligned_cols=107 Identities=16% Similarity=0.185 Sum_probs=96.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++++.+|||+|||+|.++..++++...+|+|+|+|+.+++.|+++... .++++++++|+.+++ +++++||+|++..
T Consensus 65 l~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~-~~~~sfD~V~~~~ 143 (282)
T d2o57a1 65 LQRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIP-CEDNSYDFIWSQD 143 (282)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCS-SCTTCEEEEEEES
T ss_pred CCCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhccccccccccccccccccccccc-ccccccchhhccc
Confidence 578889999999999999999887334899999999999999998743 247999999999998 8889999999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+++|+ +++.+++++++++|||||++++.++.
T Consensus 144 ~l~h~-------~d~~~~l~~~~~~LkpgG~l~~~~~~ 174 (282)
T d2o57a1 144 AFLHS-------PDKLKVFQECARVLKPRGVMAITDPM 174 (282)
T ss_dssp CGGGC-------SCHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhhc-------cCHHHHHHHHHHhcCCCcEEEEEEee
Confidence 99999 78899999999999999999998753
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.82 E-value=3e-20 Score=149.29 Aligned_cols=115 Identities=14% Similarity=0.218 Sum_probs=95.7
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCee
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~D 117 (252)
+.+.+....+++.+|||+|||+|.++..+++.|. +++|+|+|+.|++.|+++.+.. .+++++++|+.+++ . .++||
T Consensus 27 ~~~~~~~~~~~~~~vLDiGCG~G~~~~~l~~~g~-~v~GvD~S~~ml~~A~~~~~~~~~~v~~~~~d~~~~~-~-~~~fD 103 (246)
T d1y8ca_ 27 IIEKCVENNLVFDDYLDLACGTGNLTENLCPKFK-NTWAVDLSQEMLSEAENKFRSQGLKPRLACQDISNLN-I-NRKFD 103 (246)
T ss_dssp HHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGSS-EEEEECSCHHHHHHHHHHHHHTTCCCEEECCCGGGCC-C-SCCEE
T ss_pred HHHHHHHhCCCCCeEEEEeCcCCHHHHHHHHhCC-ccEeeccchhhhhhccccccccCccceeeccchhhhc-c-ccccc
Confidence 4455555555667999999999999999999976 8999999999999999987543 37999999999986 3 56899
Q ss_pred EEEec-cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 118 AVIDK-GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 118 ~v~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+|+|. .+++|+ .+.+++.+++++++++|+|||.+++...
T Consensus 104 ~i~~~~~~~~~~----~~~~~~~~~l~~~~~~LkpgG~~i~~~~ 143 (246)
T d1y8ca_ 104 LITCCLDSTNYI----IDSDDLKKYFKAVSNHLKEGGVFIFDIN 143 (246)
T ss_dssp EEEECTTGGGGC----CSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred ccceeeeeeecc----CCHHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 99985 567766 4567999999999999999999887543
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.82 E-value=7.9e-20 Score=147.38 Aligned_cols=118 Identities=18% Similarity=0.312 Sum_probs=99.2
Q ss_pred HHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeE
Q 025475 42 FVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 42 ~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
++....+++.+|||+|||+|..+..+++.+..+|+|+|+|+.|++.|+++.... .++.+.++|+...+....++||+
T Consensus 17 lI~~~~~~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~~~~~~fD~ 96 (252)
T d1ri5a_ 17 LIRLYTKRGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMDLGKEFDV 96 (252)
T ss_dssp HHHHHCCTTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCCCSSCEEE
T ss_pred HHHHhCCCcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcccccccceE
Confidence 456667889999999999999999999988778999999999999999987543 26889999997765235678999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
|++..++||+ ..+.++..++++++.++|+|||++++..+..
T Consensus 97 V~~~~~l~~~---~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~ 137 (252)
T d1ri5a_ 97 ISSQFSFHYA---FSTSESLDIAQRNIARHLRPGGYFIMTVPSR 137 (252)
T ss_dssp EEEESCGGGG---GSSHHHHHHHHHHHHHTEEEEEEEEEEEECH
T ss_pred EEEcceeeec---CCCHHHHHHHHHHHhceeCCCCEEEEEecCH
Confidence 9999999986 2344678899999999999999999877553
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.81 E-value=2.7e-19 Score=141.76 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=122.5
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHc---CCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCC
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKD---GYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFE 112 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~---~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~ 112 (252)
+..++.+..+++.+|||+|||+|..+..+++. ...+|+|+|+|+.|++.|+++.+..+ ++++...|+.+.+
T Consensus 29 i~~~~~~~~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~~~--- 105 (225)
T d1im8a_ 29 IGMLAERFVTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVE--- 105 (225)
T ss_dssp HHHHHHHHCCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTTCC---
T ss_pred HHHHHHHhcCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhccc---
Confidence 44556677889999999999999999999875 24499999999999999999875432 5667777776654
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhh-hh-ccccccceeEEEEEecCCCCC
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARM-IH-LKWKVYNWKIELYIIARPGFE 190 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~ 190 (252)
...+|+|++..++||+ +.+++.+++++++++|+|||.+++.++..+.... .. .......|. ...++.
T Consensus 106 ~~~~d~i~~~~~l~~~-----~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~ 174 (225)
T d1im8a_ 106 IKNASMVILNFTLQFL-----PPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTKINHLLIDLHHQFK------RANGYS 174 (225)
T ss_dssp CCSEEEEEEESCGGGS-----CGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHHHHHHHHHHHHHHH------HHTTGG
T ss_pred cccceeeEEeeecccc-----ChhhHHHHHHHHHHhCCCCceeecccccccccchhhhHHHHHHHHHH------HHcCCC
Confidence 4579999999999999 8889999999999999999999998866443221 11 100111111 112332
Q ss_pred CCCCC--CCCCcccCCCcccCCCCCCccccccCCCCceEE
Q 025475 191 KPGGC--SSSMKSYLEPVPITDDGQLPAEFVLEDPDSHFI 228 (252)
Q Consensus 191 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~~~~ 228 (252)
..... ...+.....+.+..+...+++++||.++.++|.
T Consensus 175 ~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~~~~ 214 (225)
T d1im8a_ 175 ELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVELWFQ 214 (225)
T ss_dssp GSTTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEEEEE
T ss_pred HHHHHHHHHHhhcccCCCCHHHHHHHHHHcCCCceEEeee
Confidence 22110 011223334445555667899999998876543
|
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.81 E-value=8.4e-20 Score=141.33 Aligned_cols=117 Identities=18% Similarity=0.244 Sum_probs=98.4
Q ss_pred hHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC--------------CCCeEEEc
Q 025475 39 LRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI--------------PQLKYLQM 103 (252)
Q Consensus 39 l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~--------------~~v~~~~~ 103 (252)
+.+.+... ++++.+|||+|||+|..+..++++|+ +|+|+|+|+.|++.|+++.+.. ..+.++++
T Consensus 9 ~~~~~~~l~~~~~~rvLd~GCG~G~~a~~la~~G~-~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T d1pjza_ 9 LQQYWSSLNVVPGARVLVPLCGKSQDMSWLSGQGY-HVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCG 87 (201)
T ss_dssp HHHHHHHHCCCTTCEEEETTTCCSHHHHHHHHHCC-EEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEE
T ss_pred HHHHHHHcCCCCCCEEEEecCcCCHHHHHHHHcCC-ceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecc
Confidence 33444443 56888999999999999999999987 9999999999999999987432 35678889
Q ss_pred cccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 104 DVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 104 d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+.+++......||+|++..+++|+ ++++....++++.++|||||.+++....
T Consensus 88 d~~~l~~~~~~~~D~i~~~~~l~~l-----~~~~~~~~~~~i~~~LkpgG~l~l~~~~ 140 (201)
T d1pjza_ 88 DFFALTARDIGHCAAFYDRAAMIAL-----PADMRERYVQHLEALMPQACSGLLITLE 140 (201)
T ss_dssp CCSSSTHHHHHSEEEEEEESCGGGS-----CHHHHHHHHHHHHHHSCSEEEEEEEEES
T ss_pred cccccccccccceeEEEEEeeeEec-----chhhhHHHHHHHHHhcCCCcEEEEEEcc
Confidence 9888763445689999999999999 8788999999999999999998887654
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.80 E-value=2.8e-19 Score=143.74 Aligned_cols=113 Identities=24% Similarity=0.463 Sum_probs=95.1
Q ss_pred HHHHHhhC-CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCCCCCCee
Q 025475 40 RPFVRKYI-PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 40 ~~~~~~~~-~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~~~~~~D 117 (252)
..++.... +++.+|||+|||+|..+..+++.|. +++|||+|+.|++.|+++++.. .++++.++|+.+++ ++ ++||
T Consensus 31 ~~~~~~~~~~~~~~iLDiGcGtG~~~~~l~~~~~-~v~gvD~s~~mi~~a~~~~~~~~~~i~~~~~d~~~l~-~~-~~fD 107 (251)
T d1wzna1 31 EEIFKEDAKREVRRVLDLACGTGIPTLELAERGY-EVVGLDLHEEMLRVARRKAKERNLKIEFLQGDVLEIA-FK-NEFD 107 (251)
T ss_dssp HHHHHHTCSSCCCEEEEETCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCCEEEESCGGGCC-CC-SCEE
T ss_pred HHHHHHhcCCCCCEEEEeCCCCCccchhhcccce-EEEEEeeccccccccccccccccccchheehhhhhcc-cc-cccc
Confidence 34444443 3556899999999999999999986 8999999999999999998643 37999999999997 55 5899
Q ss_pred EEEec-cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 118 AVIDK-GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 118 ~v~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+|++. .+++|+ +.+++.++|++++++|||||++++...
T Consensus 108 ~I~~~~~~~~~~-----~~~~~~~~L~~~~~~LkpgG~lii~~~ 146 (251)
T d1wzna1 108 AVTMFFSTIMYF-----DEEDLRKLFSKVAEALKPGGVFITDFP 146 (251)
T ss_dssp EEEECSSGGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hHhhhhhhhhcC-----ChHHHHHHHHHHHHHcCCCcEEEEEec
Confidence 99996 577777 668889999999999999999988653
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.80 E-value=1e-19 Score=146.09 Aligned_cols=105 Identities=22% Similarity=0.251 Sum_probs=93.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||+|..+..+++....+++|||+|+.|++.|+++.... ++++++++|+.++. .+++||+|++..
T Consensus 31 l~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~~--~~~~fD~v~~~~ 108 (245)
T d1nkva_ 31 MKPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYV--ANEKCDVAACVG 108 (245)
T ss_dssp CCTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCC--CSSCEEEEEEES
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhcc--ccCceeEEEEEe
Confidence 6788999999999999999998864359999999999999999987443 36899999999874 678999999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++|+ .++.+++++++++|||||++++.+.
T Consensus 109 ~~~~~-------~d~~~~l~~~~r~LkPGG~l~i~~~ 138 (245)
T d1nkva_ 109 ATWIA-------GGFAGAEELLAQSLKPGGIMLIGEP 138 (245)
T ss_dssp CGGGT-------SSSHHHHHHHTTSEEEEEEEEEEEE
T ss_pred hhhcc-------CCHHHHHHHHHHHcCcCcEEEEEec
Confidence 99999 7899999999999999999999764
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.77 E-value=1.1e-18 Score=138.12 Aligned_cols=107 Identities=15% Similarity=0.277 Sum_probs=92.8
Q ss_pred HHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 43 VRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 43 ~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
+....+ +.+|||+|||+|.++..+++.|. +|+|+|+|+.+++.|+++... ++.++++++.+.+ .+++||+|++.
T Consensus 15 ~~~~~~-~~~VLDiGcG~G~~~~~l~~~g~-~v~giD~s~~~i~~a~~~~~~--~~~~~~~~~~~~~--~~~~fD~I~~~ 88 (225)
T d2p7ia1 15 FTPFFR-PGNLLELGSFKGDFTSRLQEHFN-DITCVEASEEAISHAQGRLKD--GITYIHSRFEDAQ--LPRRYDNIVLT 88 (225)
T ss_dssp HGGGCC-SSCEEEESCTTSHHHHHHTTTCS-CEEEEESCHHHHHHHHHHSCS--CEEEEESCGGGCC--CSSCEEEEEEE
T ss_pred hhhhCC-CCcEEEEeCCCcHHHHHHHHcCC-eEEEEeCcHHHhhhhhccccc--ccccccccccccc--ccccccccccc
Confidence 344444 55899999999999999998875 899999999999999988643 6899999998886 45789999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHH-HcccCCcEEEEEEcCC
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVS-RLLKPGGIYMLITYGD 162 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~-~~L~~gG~l~i~~~~~ 162 (252)
.+++|+ +++..++.+++ ++|+|||.+++..++.
T Consensus 89 ~vleh~-------~d~~~~l~~i~~~~Lk~gG~l~i~~pn~ 122 (225)
T d2p7ia1 89 HVLEHI-------DDPVALLKRINDDWLAEGGRLFLVCPNA 122 (225)
T ss_dssp SCGGGC-------SSHHHHHHHHHHTTEEEEEEEEEEEECT
T ss_pred ceeEec-------CCHHHHHHHHHHHhcCCCceEEEEeCCc
Confidence 999999 89999999998 7899999999987653
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.76 E-value=1e-18 Score=136.64 Aligned_cols=105 Identities=18% Similarity=0.256 Sum_probs=90.6
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
..+... .++.+|||+|||+|.++..+ .+++|+|+|+.+++.++++ ++.++++|+.+++ +++++||+|+
T Consensus 29 ~~~~~~-~~~~~vLDiGcG~G~~~~~~-----~~~~giD~s~~~~~~a~~~-----~~~~~~~d~~~l~-~~~~~fD~I~ 96 (208)
T d1vlma_ 29 QAVKCL-LPEGRGVEIGVGTGRFAVPL-----KIKIGVEPSERMAEIARKR-----GVFVLKGTAENLP-LKDESFDFAL 96 (208)
T ss_dssp HHHHHH-CCSSCEEEETCTTSTTHHHH-----TCCEEEESCHHHHHHHHHT-----TCEEEECBTTBCC-SCTTCEEEEE
T ss_pred HHHHhh-CCCCeEEEECCCCccccccc-----ceEEEEeCChhhccccccc-----ccccccccccccc-cccccccccc
Confidence 344444 34568999999999988777 2678999999999999875 5899999999998 8889999999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+..+++|+ +++.+++++++++|+|||.+++.++....
T Consensus 97 ~~~~l~h~-------~d~~~~l~~~~~~L~pgG~l~i~~~~~~~ 133 (208)
T d1vlma_ 97 MVTTICFV-------DDPERALKEAYRILKKGGYLIVGIVDRES 133 (208)
T ss_dssp EESCGGGS-------SCHHHHHHHHHHHEEEEEEEEEEEECSSS
T ss_pred cccccccc-------cccccchhhhhhcCCCCceEEEEecCCcc
Confidence 99999999 78999999999999999999999876543
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.76 E-value=2.1e-18 Score=141.06 Aligned_cols=106 Identities=16% Similarity=0.287 Sum_probs=93.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC--CCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG--YEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~--~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+.++.+|||+|||+|.++..+++.. ..+|+|+|+|+.+++.|++++...+ +++++++|+.+++ ++ ++||+|++..
T Consensus 25 ~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~~~~f~~~d~~~~~-~~-~~fD~v~~~~ 102 (281)
T d2gh1a1 25 ITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPYDSEFLEGDATEIE-LN-DKYDIAICHA 102 (281)
T ss_dssp CCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSSEEEEEESCTTTCC-CS-SCEEEEEEES
T ss_pred cCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccccccccccccccccccc-cc-CCceEEEEeh
Confidence 4567799999999999999998762 3489999999999999999986644 7899999999887 54 5799999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+++|+ +++..++++++++|||||.+++.+..
T Consensus 103 ~l~~~-------~d~~~~l~~~~~~LkpgG~lii~~~~ 133 (281)
T d2gh1a1 103 FLLHM-------TTPETMLQKMIHSVKKGGKIICFEPH 133 (281)
T ss_dssp CGGGC-------SSHHHHHHHHHHTEEEEEEEEEEECC
T ss_pred hhhcC-------CCHHHHHHHHHHHcCcCcEEEEEECC
Confidence 99999 88899999999999999999998854
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.72 E-value=3.6e-17 Score=133.25 Aligned_cols=105 Identities=11% Similarity=0.188 Sum_probs=89.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++++.+|||+|||+|.++..+++....+|+|+|+|+.+++.|+++++..+ .+.+...|..++ +++||.|++..
T Consensus 50 l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~~----~~~fD~i~si~ 125 (280)
T d2fk8a1 50 LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF----AEPVDRIVSIE 125 (280)
T ss_dssp CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC----CCCCSEEEEES
T ss_pred CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhhh----ccchhhhhHhh
Confidence 56888999999999999999987733499999999999999999985533 466666666554 35899999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+++|+ +..+...++++++++|||||.+++.+.
T Consensus 126 ~~eh~-----~~~~~~~~f~~i~~~LkpgG~~~i~~i 157 (280)
T d2fk8a1 126 AFEHF-----GHENYDDFFKRCFNIMPADGRMTVQSS 157 (280)
T ss_dssp CGGGT-----CGGGHHHHHHHHHHHSCTTCEEEEEEE
T ss_pred HHHHh-----hhhhHHHHHHHHHhccCCCceEEEEEe
Confidence 99999 777889999999999999999999764
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.72 E-value=4.7e-17 Score=132.00 Aligned_cols=105 Identities=27% Similarity=0.439 Sum_probs=88.5
Q ss_pred HHHHHhhC-CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCee
Q 025475 40 RPFVRKYI-PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 40 ~~~~~~~~-~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D 117 (252)
...+.... .++.+|||+|||+|.++..+++.+ ..+++|+|+|+.|++.|+++. +++.++++|+.+++ +++++||
T Consensus 74 ~~~l~~~~~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~---~~~~~~~~d~~~l~-~~~~sfD 149 (268)
T d1p91a_ 74 VAQLRERLDDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY---PQVTFCVASSHRLP-FSDTSMD 149 (268)
T ss_dssp HHHHHHHSCTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC---TTSEEEECCTTSCS-BCTTCEE
T ss_pred HHHHHHhcCCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc---ccccceeeehhhcc-CCCCCEE
Confidence 34444444 456699999999999999999985 458999999999999998875 57899999999998 8999999
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
+|++..+.+|+ ++++|+|||||.+++.+++.
T Consensus 150 ~v~~~~~~~~~--------------~e~~rvLkpgG~l~~~~p~~ 180 (268)
T d1p91a_ 150 AIIRIYAPCKA--------------EELARVVKPGGWVITATPGP 180 (268)
T ss_dssp EEEEESCCCCH--------------HHHHHHEEEEEEEEEEEECT
T ss_pred EEeecCCHHHH--------------HHHHHHhCCCcEEEEEeeCC
Confidence 99998776654 46899999999999998754
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=3.5e-18 Score=137.63 Aligned_cols=146 Identities=16% Similarity=0.138 Sum_probs=100.4
Q ss_pred CCChhhHHHHhccCCCceeeeccc----hhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHH
Q 025475 13 YGDALYWNARYVQEGGSFDWYQRY----SALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMM 88 (252)
Q Consensus 13 ~~~~~~w~~~y~~~~~~~~~~~~~----~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a 88 (252)
++..+||+..|......+...... ..+.+.+.....++.+|||+|||+|.++..++..+..+|+|+|+|+.|++.|
T Consensus 11 f~~~~Y~~~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a 90 (257)
T d2a14a1 11 FLPRDYLATYYSFDGSPSPEAEMLKFNLECLHKTFGPGGLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREEL 90 (257)
T ss_dssp CCHHHHHHHHCCCCCSCCHHHHHHHHHHHHHHHHHSTTSCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHH
T ss_pred cChHHHHHHHhCcCccccHHHHHHHHHHHHHHHHhcccCCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHH
Confidence 455789999886554332211111 1122223333345679999999999998888777655899999999999999
Q ss_pred HHhhcCCC-CC-------------------------------eEEEcccc----CCCCCCCCCeeEEEeccchhhhcCCC
Q 025475 89 KMKYEEIP-QL-------------------------------KYLQMDVR----DMSFFEDESFDAVIDKGTLDSLMCGT 132 (252)
Q Consensus 89 ~~~~~~~~-~v-------------------------------~~~~~d~~----~~~~~~~~~~D~v~~~~~l~~~~~~~ 132 (252)
+++++..+ .+ .....+.. ..+ ...++||+|++..++||+ .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~fD~i~~~~~l~~~---~ 166 (257)
T d2a14a1 91 EKWLKKEPGAYDWTPAVKFACELEGNSGRWEEKEEKLRAAVKRVLKCDVHLGNPLAP-AVLPLADCVLTLLAMECA---C 166 (257)
T ss_dssp HHHHHTCTTCCCCHHHHHHHHHHTTCGGGHHHHHHHHHHHEEEEEECCTTSSSTTTT-CCCCCEEEEEEESCHHHH---C
T ss_pred HHHHhhccccchhhhHHHHHHHhccccchHHHHHHHHhhhhhccccccccccccccc-ccCCcccEEeehhhHHHh---c
Confidence 99875422 11 01111111 112 567889999999999998 2
Q ss_pred CChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 133 NAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 133 ~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
...++...++++++++|||||++++.++..
T Consensus 167 ~~~~~~~~~l~~i~~~LkpGG~li~~~~~~ 196 (257)
T d2a14a1 167 CSLDAYRAALCNLASLLKPGGHLVTTVTLR 196 (257)
T ss_dssp SSHHHHHHHHHHHHTTEEEEEEEEEEEESS
T ss_pred ccHHHHHHHHHHHHhccCCCcEEEEEEecc
Confidence 234688899999999999999999988643
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.71 E-value=9.6e-18 Score=134.46 Aligned_cols=110 Identities=15% Similarity=0.209 Sum_probs=91.6
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCee
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFD 117 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D 117 (252)
..+.+.+...++.+|||+|||+|.++..+++.|. +|+|+|+|+.|++.|+++.+..+ ++++.++|+.+. .+.++||
T Consensus 110 ~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g~-~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~--~~~~~fD 186 (254)
T d2nxca1 110 ALKALARHLRPGDKVLDLGTGSGVLAIAAEKLGG-KALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAA--LPFGPFD 186 (254)
T ss_dssp HHHHHHHHCCTTCEEEEETCTTSHHHHHHHHTTC-EEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHH--GGGCCEE
T ss_pred HHHHHHhhcCccCEEEEcccchhHHHHHHHhcCC-EEEEEECChHHHHHHHHHHHHcCCceeEEecccccc--ccccccc
Confidence 4566777788899999999999999999998875 89999999999999999886433 678889988764 4567899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|+++...+.+ .++++++.++|||||+++++.+.
T Consensus 187 ~V~ani~~~~l----------~~l~~~~~~~LkpGG~lilSgil 220 (254)
T d2nxca1 187 LLVANLYAELH----------AALAPRYREALVPGGRALLTGIL 220 (254)
T ss_dssp EEEEECCHHHH----------HHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hhhhccccccH----------HHHHHHHHHhcCCCcEEEEEecc
Confidence 99997654444 66788999999999999997653
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.71 E-value=7e-17 Score=132.58 Aligned_cols=141 Identities=18% Similarity=0.274 Sum_probs=96.6
Q ss_pred hhhHHHHhccCCCceeeeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC
Q 025475 16 ALYWNARYVQEGGSFDWYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI 95 (252)
Q Consensus 16 ~~~w~~~y~~~~~~~~~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~ 95 (252)
..+|+..+.+......++. .-+...+.. .++.+|||+|||+|..+..+++.|. +|+|+|+|+.|++.|+++....
T Consensus 27 ~~~~~~~~~~~~~r~~~~~--~~l~~~l~~--~~~~~vLD~GcG~G~~~~~la~~g~-~v~gvD~S~~ml~~A~~~~~~~ 101 (292)
T d1xvaa_ 27 ARVWQLYIGDTRSRTAEYK--AWLLGLLRQ--HGCHRVLDVACGTGVDSIMLVEEGF-SVTSVDASDKMLKYALKERWNR 101 (292)
T ss_dssp HHHHHHHHHTTCCBCHHHH--HHHHHHHHH--TTCCEEEESSCTTSHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcchhhhHHHHH--HHHHHHhhh--cCCCEEEEecCCCcHHHHHHHHcCC-eeeeccCchHHHHHHHHHHHhc
Confidence 3467766554333222111 112333333 2456999999999999999999986 8999999999999999876432
Q ss_pred C------CCeEEEccccCCC--CCCCCCeeEEEec-cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 96 P------QLKYLQMDVRDMS--FFEDESFDAVIDK-GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 96 ~------~v~~~~~d~~~~~--~~~~~~~D~v~~~-~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
. ...+..++..... ....++||+|++. .+++|+.....+.++...++++++++|||||++++...+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~ 176 (292)
T d1xvaa_ 102 RKEPAFDKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLVIDHRN 176 (292)
T ss_dssp TTSHHHHTCEEEECCGGGHHHHSCCTTCEEEEEECSSCGGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEEEEEEC
T ss_pred ccccccceeeeeeccccccccccCCCCCceEEEEecCchhhcCCcccChHHHHHHHHHHHHHcCcCcEEEEeecC
Confidence 1 3345555554321 0245689999975 478887333334467899999999999999999886643
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.70 E-value=4.7e-17 Score=131.65 Aligned_cols=145 Identities=19% Similarity=0.232 Sum_probs=101.5
Q ss_pred CCChhhHHHHhccCCCcee----eecc-chhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHH
Q 025475 13 YGDALYWNARYVQEGGSFD----WYQR-YSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDM 87 (252)
Q Consensus 13 ~~~~~~w~~~y~~~~~~~~----~~~~-~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~ 87 (252)
+...+||+..|......+. |... ...+.+.+......+.++||+|||+|.++...+.....+|+++|+|+.|++.
T Consensus 13 f~~~~Y~~~~y~~~~~~~~~~~~~~~~~~~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~ 92 (263)
T d2g72a1 13 FEPRAYLRNNYAPPRGDLCNPNGVGPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQE 92 (263)
T ss_dssp CCHHHHHHHHHSTTTTCCSSTTSHHHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHH
T ss_pred cCHHHHHHHHhCcCcccchhhhhhhhhHHHHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHH
Confidence 4556899999976544322 1111 1223333443444677999999999988765555545589999999999999
Q ss_pred HHHhhcCCC-C-------------------------------CeEEEccccCCC-----CCCCCCeeEEEeccchhhhcC
Q 025475 88 MKMKYEEIP-Q-------------------------------LKYLQMDVRDMS-----FFEDESFDAVIDKGTLDSLMC 130 (252)
Q Consensus 88 a~~~~~~~~-~-------------------------------v~~~~~d~~~~~-----~~~~~~~D~v~~~~~l~~~~~ 130 (252)
+++++...+ . ..+..+|+.... ....++||+|++..++||+
T Consensus 93 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i-- 170 (263)
T d2g72a1 93 LGRWLQEEPGAFNWSMYSQHACLIEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAV-- 170 (263)
T ss_dssp HHHHHTTCTTCCCCHHHHHHHHHHHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHH--
T ss_pred HHHHHhcCcccccchhhhhhhhhhccccchhhhhHHHhhhhhhccccccccCCCccccCCcCcCccCeeeeHHHHHHH--
Confidence 998764321 1 123445654422 1345689999999999998
Q ss_pred CCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 131 GTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.++.++..+++++++++|||||.|++...
T Consensus 171 -~~~~~~~~~~l~~~~~~LkPGG~li~~~~ 199 (263)
T d2g72a1 171 -SPDLASFQRALDHITTLLRPGGHLLLIGA 199 (263)
T ss_dssp -CSSHHHHHHHHHHHHTTEEEEEEEEEEEE
T ss_pred -ccCHHHHHHHHHHHHHHcCCCCEEEEecc
Confidence 33456789999999999999999998774
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.70 E-value=6.5e-17 Score=132.16 Aligned_cols=113 Identities=16% Similarity=0.216 Sum_probs=89.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++++.+|||+|||.|.++..+++...++++|+++|+..++.++++....+ .+.+...|. + ..+++||.|++..
T Consensus 59 l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~---~-~~~~~fD~i~sie 134 (291)
T d1kpia_ 59 LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGW---E-EFDEPVDRIVSLG 134 (291)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCG---G-GCCCCCSEEEEES
T ss_pred CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHHhhccchhhhhhhhcc---c-ccccccceEeech
Confidence 56888999999999999999887633499999999999999999885432 455655554 3 4467899999999
Q ss_pred chhhhcC--CCCChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 124 TLDSLMC--GTNAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 124 ~l~~~~~--~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+++|+.- .....+....++++++++|||||++++.++..+
T Consensus 135 ~~eH~~~~~~~~~~~~~~~~f~~i~~~LkpgG~~~l~~i~~~ 176 (291)
T d1kpia_ 135 AFEHFADGAGDAGFERYDTFFKKFYNLTPDDGRMLLHTITIP 176 (291)
T ss_dssp CGGGTTCCSSCCSTTHHHHHHHHHHHTSCTTCEEEEEEEECC
T ss_pred hHHhcchhhhhhHHHHHHHHHHHHHHhCCCCCceEEEEEecc
Confidence 9999810 000124678999999999999999999887543
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.69 E-value=1e-16 Score=126.69 Aligned_cols=124 Identities=14% Similarity=0.106 Sum_probs=102.6
Q ss_pred eeeeccchhhHHHHHhh-----CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc
Q 025475 30 FDWYQRYSALRPFVRKY-----IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM 103 (252)
Q Consensus 30 ~~~~~~~~~l~~~~~~~-----~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~ 103 (252)
..|-...+.+...+... ++++.+|||+|||+|..+..+++.+ .+.|+|+|+|+.|++.++++....+++..+..
T Consensus 50 r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a~~~~ni~~i~~ 129 (230)
T d1g8sa_ 50 RIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACAERENIIPILG 129 (230)
T ss_dssp EECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTTTCTTEEEEEC
T ss_pred eeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHhhhcccceEEE
Confidence 34655555666665443 4688899999999999999999984 56899999999999999999877778888999
Q ss_pred cccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 104 DVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 104 d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|........+..+|++++...+++. .+...+++++++.|||||.++++..
T Consensus 130 d~~~~~~~~~~~~~v~~i~~~~~~~-------~~~~~~l~~~~r~LKpgG~~~i~~k 179 (230)
T d1g8sa_ 130 DANKPQEYANIVEKVDVIYEDVAQP-------NQAEILIKNAKWFLKKGGYGMIAIK 179 (230)
T ss_dssp CTTCGGGGTTTCCCEEEEEECCCST-------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred eeccCcccccccceeEEeeccccch-------HHHHHHHHHHHHhcccCceEEEEee
Confidence 9887764566678888887777777 8899999999999999999988763
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.68 E-value=2.8e-16 Score=121.36 Aligned_cols=112 Identities=15% Similarity=0.277 Sum_probs=90.9
Q ss_pred HHHHhhC--CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEccccCCCCCCCC
Q 025475 41 PFVRKYI--PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 41 ~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d~~~~~~~~~~ 114 (252)
+++...+ .++.+|||+|||+|.++..++..+ .+++++|+|+.+++.++++++.. .++++..+|..+. .+++
T Consensus 42 ~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~-~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~--~~~~ 118 (194)
T d1dusa_ 42 KILVENVVVDKDDDILDLGCGYGVIGIALADEV-KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN--VKDR 118 (194)
T ss_dssp HHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS-SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT--CTTS
T ss_pred HHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc-cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh--hccC
Confidence 4444444 467799999999999999998875 48999999999999999987432 3588999998874 4678
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+||+|+++.++|+. .+...++++++.++|+|||.+++....
T Consensus 119 ~fD~Ii~~~p~~~~------~~~~~~~l~~~~~~LkpgG~l~i~~~~ 159 (194)
T d1dusa_ 119 KYNKIITNPPIRAG------KEVLHRIIEEGKELLKDNGEIWVVIQT 159 (194)
T ss_dssp CEEEEEECCCSTTC------HHHHHHHHHHHHHHEEEEEEEEEEEES
T ss_pred CceEEEEcccEEec------chhhhhHHHHHHHhcCcCcEEEEEEeC
Confidence 99999999998765 234578999999999999998876544
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.67 E-value=2e-16 Score=128.84 Aligned_cols=106 Identities=17% Similarity=0.263 Sum_probs=91.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++++.+|||+|||.|.++..+++...++|+|+++|+..++.++++.+.. .++++..+|..+++ ++||.|++..
T Consensus 60 l~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~~----~~fD~i~si~ 135 (285)
T d1kpga_ 60 LQPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQFD----EPVDRIVSIG 135 (285)
T ss_dssp CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGCC----CCCSEEEEES
T ss_pred CCCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhccc----ccccceeeeh
Confidence 5688899999999999999988773359999999999999999987543 37888888887664 5799999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.++|+ .......++++++++|+|||.+++.++.
T Consensus 136 ~~eh~-----~~~~~~~~~~~~~r~LkpgG~~~l~~i~ 168 (285)
T d1kpga_ 136 AFEHF-----GHERYDAFFSLAHRLLPADGVMLLHTIT 168 (285)
T ss_dssp CGGGT-----CTTTHHHHHHHHHHHSCTTCEEEEEEEE
T ss_pred hhhhc-----CchhHHHHHHHHHhhcCCCCcEEEEEEe
Confidence 99999 6667789999999999999999987764
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.67 E-value=1.3e-16 Score=122.43 Aligned_cols=112 Identities=18% Similarity=0.265 Sum_probs=91.8
Q ss_pred hhHHHHHhh--CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCC
Q 025475 38 ALRPFVRKY--IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFE 112 (252)
Q Consensus 38 ~l~~~~~~~--~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~ 112 (252)
.++.++... +.++.+|||+|||+|.++..++..+ .+|+++|+++.+++.|+++++.. ++++++++|+.+.. ..
T Consensus 20 eir~~il~~l~~~~g~~VLDiGcGsG~~s~~lA~~~-~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~~-~~ 97 (186)
T d1l3ia_ 20 EVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV-RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEAL-CK 97 (186)
T ss_dssp HHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHHH-TT
T ss_pred HHHHHHHHhcCCCCCCEEEEEECCeEcccccccccc-eEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhcc-cc
Confidence 344444443 4577899999999999999998874 59999999999999999998543 48999999998876 56
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
...||+|++....+++ ..+++.+.+.|+|||.+++....
T Consensus 98 ~~~~D~v~~~~~~~~~----------~~~~~~~~~~LkpgG~lvi~~~~ 136 (186)
T d1l3ia_ 98 IPDIDIAVVGGSGGEL----------QEILRIIKDKLKPGGRIIVTAIL 136 (186)
T ss_dssp SCCEEEEEESCCTTCH----------HHHHHHHHHTEEEEEEEEEEECB
T ss_pred cCCcCEEEEeCccccc----------hHHHHHHHHHhCcCCEEEEEeec
Confidence 6789999998776655 56899999999999999887643
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=9.8e-17 Score=127.16 Aligned_cols=106 Identities=19% Similarity=0.212 Sum_probs=86.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCC-CCCCCCeeEEEe---
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMS-FFEDESFDAVID--- 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~-~~~~~~~D~v~~--- 121 (252)
.+++.+|||||||+|..+..+++.+..+++++|+|+.+++.|+++....+ ++..+..+..+.. .+++++||.|+.
T Consensus 51 ~~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i~fD~~ 130 (229)
T d1zx0a1 51 SSKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTLPDGHFDGILYDTY 130 (229)
T ss_dssp TTTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGSCTTCEEEEEECCC
T ss_pred ccCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhcccccccccccccccccccccccccceeeccc
Confidence 45778999999999999999998765589999999999999999986543 5677777765432 267788999884
Q ss_pred --ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 122 --KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 122 --~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
...++|+ .+...++++++|+|||||++++..
T Consensus 131 ~~~~~~~~~-------~~~~~~~~~~~r~LkpGG~~~~~~ 163 (229)
T d1zx0a1 131 PLSEETWHT-------HQFNFIKNHAFRLLKPGGVLTYCN 163 (229)
T ss_dssp CCBGGGTTT-------HHHHHHHHTHHHHEEEEEEEEECC
T ss_pred ccccccccc-------cCHHHHHHHHHHHcCCCcEEEEEe
Confidence 4556666 889999999999999999987643
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.66 E-value=3.8e-16 Score=121.75 Aligned_cols=121 Identities=14% Similarity=0.147 Sum_probs=93.2
Q ss_pred eeeeccchhhHHHHHh----hCCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc
Q 025475 30 FDWYQRYSALRPFVRK----YIPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD 104 (252)
Q Consensus 30 ~~~~~~~~~l~~~~~~----~~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d 104 (252)
..|-...+.+...+.. .++|+.+|||+|||+|..+..+++. +.++|+|+|+|+.|++.++++.+..+++.++..|
T Consensus 33 r~w~p~rsklaa~i~~g~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~~~~ni~~i~~d 112 (209)
T d1nt2a_ 33 REWVPWRSKLAAMILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVRERNNIIPLLFD 112 (209)
T ss_dssp EECCGGGCHHHHHHHTSCCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHHHCSSEEEECSC
T ss_pred eeeCCcchHHHHHHhccccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhhccCCceEEEee
Confidence 3454444445544433 2578899999999999999999987 4568999999999999999998777789999999
Q ss_pred ccCCCCCCCC---CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 105 VRDMSFFEDE---SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 105 ~~~~~~~~~~---~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
..+.. .... .+|+|+. .+.|. .+...++++++++|||||++++...
T Consensus 113 ~~~~~-~~~~~~~~vd~v~~--~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~~ 161 (209)
T d1nt2a_ 113 ASKPW-KYSGIVEKVDLIYQ--DIAQK-------NQIEILKANAEFFLKEKGEVVIMVK 161 (209)
T ss_dssp TTCGG-GTTTTCCCEEEEEE--CCCST-------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccCcc-ccccccceEEEEEe--cccCh-------hhHHHHHHHHHHHhccCCeEEEEEE
Confidence 98865 3332 3454443 34444 7788999999999999999998763
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.66 E-value=3.3e-16 Score=125.94 Aligned_cols=106 Identities=17% Similarity=0.226 Sum_probs=89.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
.+..+|||+|||+|.++..+++.. ..+++++|+ +.+++.++++.... .+++++.+|+.+.. + .+||+|++..
T Consensus 79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~~--~-~~~D~v~~~~ 154 (253)
T d1tw3a2 79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEPL--P-RKADAIILSF 154 (253)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSCC--S-SCEEEEEEES
T ss_pred ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhhc--c-cchhheeecc
Confidence 455699999999999999999884 558999998 67889998887542 47999999987643 3 4699999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
++||+ ++++..++|++++++|||||.+++.+...
T Consensus 155 vlh~~-----~d~~~~~~L~~~~~~LkPGG~l~i~e~~~ 188 (253)
T d1tw3a2 155 VLLNW-----PDHDAVRILTRCAEALEPGGRILIHERDD 188 (253)
T ss_dssp CGGGS-----CHHHHHHHHHHHHHTEEEEEEEEEEECCB
T ss_pred ccccC-----CchhhHHHHHHHHHhcCCCcEEEEEeccC
Confidence 99999 77788899999999999999999988643
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.63 E-value=3.5e-16 Score=127.56 Aligned_cols=107 Identities=14% Similarity=0.144 Sum_probs=83.7
Q ss_pred CcEEEEcccCcHhHHHHHHc------C-CCcEEEEeCCHHHHHHHHHhhcCCCC---C--eEEEccccCC-----CCCCC
Q 025475 51 SRVLMVGCGNALMSEDMVKD------G-YEDIVNIDISSVAIDMMKMKYEEIPQ---L--KYLQMDVRDM-----SFFED 113 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~------~-~~~v~~vD~s~~~i~~a~~~~~~~~~---v--~~~~~d~~~~-----~~~~~ 113 (252)
.+|||+|||+|.++..++.. + ...++++|+|+.|++.++++++..++ + .+.+.++.++ ...++
T Consensus 42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (280)
T d1jqea_ 42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL 121 (280)
T ss_dssp EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence 38999999999998887654 1 23689999999999999999865433 2 2333333221 11567
Q ss_pred CCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
++||+|++..++||+ +++.+++++++++|+|||.+++..+....
T Consensus 122 ~~fD~I~~~~~l~~~-------~d~~~~l~~l~~~LkpgG~l~i~~~~~~~ 165 (280)
T d1jqea_ 122 QKWDFIHMIQMLYYV-------KDIPATLKFFHSLLGTNAKMLIIVVSGSS 165 (280)
T ss_dssp CCEEEEEEESCGGGC-------SCHHHHHHHHHHTEEEEEEEEEEEECTTS
T ss_pred CceeEEEEccceecC-------CCHHHHHHHHHhhCCCCCEEEEEEecCcc
Confidence 899999999999999 88999999999999999999998876543
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.59 E-value=4.6e-15 Score=119.25 Aligned_cols=105 Identities=17% Similarity=0.194 Sum_probs=89.6
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
++..+|||||||+|.++..+++.. ..+++++|+ +++++.++++++.. .++.++.+|+.+. .+ .++|+|++..
T Consensus 80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~--~p-~~~D~v~~~~ 155 (256)
T d1qzza2 80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKP--LP-VTADVVLLSF 155 (256)
T ss_dssp TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSC--CS-CCEEEEEEES
T ss_pred ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeecccc--cc-ccchhhhccc
Confidence 455699999999999999999984 558999998 88899998887532 3689999998764 33 3599999999
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++|++ ++++..++|++++++|+|||.++|.+..
T Consensus 156 vLh~~-----~d~~~~~lL~~i~~~LkpgG~llI~d~~ 188 (256)
T d1qzza2 156 VLLNW-----SDEDALTILRGCVRALEPGGRLLVLDRA 188 (256)
T ss_dssp CGGGS-----CHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred ccccc-----CcHHHHHHHHHHHhhcCCcceeEEEEec
Confidence 99999 7788899999999999999999998864
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.59 E-value=6.2e-15 Score=115.22 Aligned_cols=99 Identities=20% Similarity=0.208 Sum_probs=83.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
++++.+|||+|||+|..+..+++. + ..+|+++|+++.+++.|+++++. ..++.++++|..+.. ...++||+|++.
T Consensus 73 l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~-~~~~~fD~I~~~ 151 (213)
T d1dl5a1 73 LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV-PEFSPYDVIFVT 151 (213)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCEEEEEEC
T ss_pred ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHcc-ccccchhhhhhh
Confidence 678889999999999999999876 3 45899999999999999999864 347889999988765 566789999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.+++++ . +++.+.|||||++++..
T Consensus 152 ~~~~~~-------p------~~l~~~LkpGG~lv~pv 175 (213)
T d1dl5a1 152 VGVDEV-------P------ETWFTQLKEGGRVIVPI 175 (213)
T ss_dssp SBBSCC-------C------HHHHHHEEEEEEEEEEB
T ss_pred ccHHHh-------H------HHHHHhcCCCcEEEEEE
Confidence 998887 2 24567899999998754
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.58 E-value=2.7e-15 Score=120.34 Aligned_cols=103 Identities=20% Similarity=0.346 Sum_probs=89.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC-----CCCCeEEEccccCCCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~-----~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
+.|+.+|||+|||+|.++..++.. + .++++++|+++++++.|+++++. ..++.++++|+.+.+ +++++||.|
T Consensus 94 i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~~d~~~~~-~~~~~fDaV 172 (264)
T d1i9ga_ 94 IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE-LPDGSVDRA 172 (264)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC-CCTTCEEEE
T ss_pred CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEeccccccc-ccCCCcceE
Confidence 578999999999999999999987 4 56999999999999999998743 348999999999887 788999999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
++ ++ .+++.++.++.++|||||.+++..++.
T Consensus 173 ~l-----dl-------p~P~~~l~~~~~~LkpGG~lv~~~P~i 203 (264)
T d1i9ga_ 173 VL-----DM-------LAPWEVLDAVSRLLVAGGVLMVYVATV 203 (264)
T ss_dssp EE-----ES-------SCGGGGHHHHHHHEEEEEEEEEEESSH
T ss_pred EE-----ec-------CCHHHHHHHHHhccCCCCEEEEEeCcc
Confidence 86 35 677889999999999999998877553
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.58 E-value=2.8e-15 Score=116.16 Aligned_cols=104 Identities=18% Similarity=0.203 Sum_probs=85.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC-CCCCCeeEEEeccc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF-FEDESFDAVIDKGT 124 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~-~~~~~~D~v~~~~~ 124 (252)
.+..|||+|||+|..+..+++.. ...++|+|+++.++..+..+... ..|+.++++|+..+.. ++++++|.|++..+
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~i~fp 108 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFEPGEVKRVYLNFS 108 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCCTTSCCEEEEESC
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccCchhhhccccccc
Confidence 34589999999999999999884 56899999999999999888753 4589999999987632 67889999998766
Q ss_pred hhhhcCCCCChhhH--------HHHHHHHHHcccCCcEEEEEE
Q 025475 125 LDSLMCGTNAPISA--------SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 125 l~~~~~~~~~~~~~--------~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..+. ... ..+++++.++|||||.|++.+
T Consensus 109 ~P~~-------k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~T 144 (204)
T d2fcaa1 109 DPWP-------KKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKT 144 (204)
T ss_dssp CCCC-------SGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEE
T ss_pred cccc-------hhhhcchhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 5443 222 579999999999999999876
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.56 E-value=5.4e-15 Score=116.31 Aligned_cols=105 Identities=18% Similarity=0.243 Sum_probs=85.9
Q ss_pred HHHHhhCCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC-------CCCCeEEEccccCCCCC
Q 025475 41 PFVRKYIPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE-------IPQLKYLQMDVRDMSFF 111 (252)
Q Consensus 41 ~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~-------~~~v~~~~~d~~~~~~~ 111 (252)
+++...++++.+|||+|||+|..+..+++. + ..+|+++|+++++++.|+++++. ..++.++.+|..... .
T Consensus 68 e~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~-~ 146 (224)
T d1i1na_ 68 ELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGY-A 146 (224)
T ss_dssp HHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCC-G
T ss_pred HHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeeccccc-c
Confidence 333445678899999999999999988876 3 55899999999999999988742 247889999998776 5
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..++||+|++...++++ . ..+.+.|||||++++..
T Consensus 147 ~~~~fD~I~~~~~~~~i-------p------~~l~~~LkpGG~LV~pv 181 (224)
T d1i1na_ 147 EEAPYDAIHVGAAAPVV-------P------QALIDQLKPGGRLILPV 181 (224)
T ss_dssp GGCCEEEEEECSBBSSC-------C------HHHHHTEEEEEEEEEEE
T ss_pred hhhhhhhhhhhcchhhc-------C------HHHHhhcCCCcEEEEEE
Confidence 67789999999988887 2 24678999999998855
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=99.56 E-value=2.2e-14 Score=112.46 Aligned_cols=98 Identities=19% Similarity=0.241 Sum_probs=83.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.|++++....++.++.+|..... ...++||+|++..+++
T Consensus 68 l~~g~~VLdIG~GsGy~ta~La~l~-~~V~aiE~~~~~~~~A~~~~~~~~nv~~~~~d~~~g~-~~~~pfD~Iiv~~a~~ 145 (224)
T d1vbfa_ 68 LHKGQKVLEIGTGIGYYTALIAEIV-DKVVSVEINEKMYNYASKLLSYYNNIKLILGDGTLGY-EEEKPYDRVVVWATAP 145 (224)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEEESCHHHHHHHHHHHTTCSSEEEEESCGGGCC-GGGCCEEEEEESSBBS
T ss_pred hcccceEEEecCCCCHHHHHHHHHh-cccccccccHHHHHHHHHHHhcccccccccCchhhcc-hhhhhHHHHHhhcchh
Confidence 5788899999999999999999885 5999999999999999999887789999999987754 3567899999998888
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++ . ..+.+.|++||+|++..
T Consensus 146 ~i-------p------~~l~~qLk~GGrLV~pv 165 (224)
T d1vbfa_ 146 TL-------L------CKPYEQLKEGGIMILPI 165 (224)
T ss_dssp SC-------C------HHHHHTEEEEEEEEEEE
T ss_pred hh-------h------HHHHHhcCCCCEEEEEE
Confidence 77 2 23567899999998854
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.55 E-value=6.5e-15 Score=117.30 Aligned_cols=101 Identities=17% Similarity=0.303 Sum_probs=86.4
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+.++.+|||+|||+|.++..+++. + .++|+++|+++++++.|+++++.. .++++..+|+.+. +++.+||+|++
T Consensus 83 i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~~Di~~~--~~~~~fD~V~l 160 (250)
T d1yb2a1 83 LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSRSDIADF--ISDQMYDAVIA 160 (250)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEECSCTTTC--CCSCCEEEEEE
T ss_pred CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEEeeeecc--cccceeeeeee
Confidence 678999999999999999999986 3 569999999999999999998643 4899999999876 46778999996
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+ + .++..++.++.++|||||++++..++
T Consensus 161 d-----~-------p~p~~~l~~~~~~LKpGG~lv~~~P~ 188 (250)
T d1yb2a1 161 D-----I-------PDPWNHVQKIASMMKPGSVATFYLPN 188 (250)
T ss_dssp C-----C-------SCGGGSHHHHHHTEEEEEEEEEEESS
T ss_pred c-----C-------CchHHHHHHHHHhcCCCceEEEEeCC
Confidence 3 3 55667899999999999999987654
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.55 E-value=1e-14 Score=121.42 Aligned_cols=102 Identities=25% Similarity=0.307 Sum_probs=85.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
++.+|||+|||+|.++..+++.|..+|+++|.|+ ++..+++.... ..+++++++++.+++ +++.+||+|++....
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~-~~~~~~D~i~se~~~ 115 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVH-LPFPKVDIIISEWMG 115 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSSSCEEEEEECCCB
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhcc-CcccceeEEEEEecc
Confidence 6789999999999999999999977999999996 56677766533 237899999999998 788899999998776
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
+++ ........++..+.++|||||.++
T Consensus 116 ~~~----~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 116 YFL----LYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp TTB----STTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eee----ccchhHHHHHHHHHhccCCCeEEE
Confidence 665 233677888999999999999975
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.53 E-value=5.9e-14 Score=110.29 Aligned_cols=122 Identities=17% Similarity=0.170 Sum_probs=95.2
Q ss_pred eeeeccchhhHHHHHhh-----CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEE
Q 025475 30 FDWYQRYSALRPFVRKY-----IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQ 102 (252)
Q Consensus 30 ~~~~~~~~~l~~~~~~~-----~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~ 102 (252)
..|-...+-+...+..- +.|+.+|||+|||+|..+..+++. | .++|+++|+++.+++.++++.+..+++..+.
T Consensus 49 R~w~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~~~~~~i~ 128 (227)
T d1g8aa_ 49 RIWNPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNIVPIL 128 (227)
T ss_dssp EECCTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSCTTEEEEE
T ss_pred EEECCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhcCCceEEE
Confidence 34544445555555443 468899999999999999999987 4 5699999999999999999988777888888
Q ss_pred ccccCCCC--CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 103 MDVRDMSF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 103 ~d~~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.|...... .....+|+|++. +.+. .+...+++++++.|||||.++++..
T Consensus 129 ~d~~~~~~~~~~~~~vD~i~~d--~~~~-------~~~~~~l~~~~~~LkpgG~lvi~~k 179 (227)
T d1g8aa_ 129 GDATKPEEYRALVPKVDVIFED--VAQP-------TQAKILIDNAEVYLKRGGYGMIAVK 179 (227)
T ss_dssp CCTTCGGGGTTTCCCEEEEEEC--CCST-------THHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred EECCCcccccccccceEEEEEE--cccc-------chHHHHHHHHHHhcccCCeEEEEEE
Confidence 88866432 334578888764 3333 7788899999999999999998754
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4.7e-14 Score=116.45 Aligned_cols=104 Identities=19% Similarity=0.244 Sum_probs=84.5
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
-++.+|||+|||+|.++..+++.|..+|+++|.|+.+....+...+. ..+++++++|+.++. .+..+||+|++....
T Consensus 34 ~~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~~~~~~i~~~~~~~~~l~-~~~~~~D~Ivse~~~ 112 (311)
T d2fyta1 34 FKDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLNKLEDTITLIKGKIEEVH-LPVEKVDVIISEWMG 112 (311)
T ss_dssp TTTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHTTCTTTEEEEESCTTTSC-CSCSCEEEEEECCCB
T ss_pred CCcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHhCCCccceEEEeeHHHhc-CccccceEEEEeeee
Confidence 46789999999999999999999977999999999887544443322 347999999999987 777899999998776
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
+++ ........++....++|+|||+++
T Consensus 113 ~~~----~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 113 YFL----LFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp TTB----TTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred eec----ccccccHHHHHHHHhcCCCCcEEe
Confidence 665 233456777888889999999986
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=99.51 E-value=6.8e-14 Score=108.24 Aligned_cols=103 Identities=22% Similarity=0.251 Sum_probs=84.0
Q ss_pred CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc--CCCCCeEEEccccCCCC-CCCCCeeEEEeccch
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSF-FEDESFDAVIDKGTL 125 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~--~~~~v~~~~~d~~~~~~-~~~~~~D~v~~~~~l 125 (252)
...|||+|||+|.++..+++.. ...++|+|+++.++..|.++.. +..|+.++.+|+.++.. +++.++|.|+++.+-
T Consensus 32 ~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~i~fPd 111 (204)
T d1yzha1 32 NPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYFEDGEIDRLYLNFSD 111 (204)
T ss_dssp CCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTSCTTCCSEEEEESCC
T ss_pred CCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhccCCceehhcccccc
Confidence 4479999999999999999884 6689999999999999988774 34689999999987642 677899999876543
Q ss_pred hhhcCCCCChhh--------HHHHHHHHHHcccCCcEEEEEE
Q 025475 126 DSLMCGTNAPIS--------ASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 126 ~~~~~~~~~~~~--------~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
-+. .. ...+++.+.++|+|||.+++.+
T Consensus 112 Pw~-------K~~h~krRl~~~~~l~~~~~~LkpgG~l~i~T 146 (204)
T d1yzha1 112 PWP-------KKRHEKRRLTYKTFLDTFKRILPENGEIHFKT 146 (204)
T ss_dssp CCC-------SGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEE
T ss_pred ccc-------chhhhhhhhhHHHHHHHHHHhCCCCcEEEEEE
Confidence 222 22 2689999999999999999876
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=3.1e-14 Score=117.82 Aligned_cols=102 Identities=20% Similarity=0.250 Sum_probs=83.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
++.+|||+|||+|.++..+++.|..+|+++|.|+.+ ..+++..+. ..+++++++|+.+++ .+.+++|+|++....
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~-~~a~~~~~~n~~~~~v~~~~~~~~~~~-~~~~~~D~ivs~~~~ 110 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSIS-DYAVKIVKANKLDHVVTIIKGKVEEVE-LPVEKVDIIISEWMG 110 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTH-HHHHHHHHHTTCTTTEEEEESCTTTCC-CSSSCEEEEEECCCB
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHH-hhhhhHHHHhCCccccceEeccHHHcc-cccceeEEEeeeeee
Confidence 678999999999999999999987789999999865 444444322 236999999999987 777899999998776
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
+++ .+......++..+.++|+|||.++
T Consensus 111 ~~l----~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 111 YCL----FYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp BTB----TBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred eee----ccHHHHHHHHHHHHhcCCCCeEEE
Confidence 665 233578899999999999999876
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2e-14 Score=119.47 Aligned_cols=111 Identities=7% Similarity=0.083 Sum_probs=87.1
Q ss_pred HHHHHhh-CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc-----------CCCCCeEEEcccc
Q 025475 40 RPFVRKY-IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE-----------EIPQLKYLQMDVR 106 (252)
Q Consensus 40 ~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~-----------~~~~v~~~~~d~~ 106 (252)
.+++... +.++.+|||+|||+|.++..++.. +..+++|+|+++.+++.|+...+ ...+++++++|+.
T Consensus 141 ~~~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~ 220 (328)
T d1nw3a_ 141 AQMIDEIKMTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFL 220 (328)
T ss_dssp HHHHHHSCCCTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTT
T ss_pred HHHHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECccc
Confidence 3444333 567889999999999999998876 46689999999999999987653 2347999999998
Q ss_pred CCCCCCCCC--eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 107 DMSFFEDES--FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 107 ~~~~~~~~~--~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.+ +.+.. +|+|+++. +.|. +++...+.++.+.|||||.+++..
T Consensus 221 ~~~-~~~~~~~advi~~~~-~~f~-------~~~~~~l~e~~r~LKpGg~iv~~~ 266 (328)
T d1nw3a_ 221 SEE-WRERIANTSVIFVNN-FAFG-------PEVDHQLKERFANMKEGGRIVSSK 266 (328)
T ss_dssp SHH-HHHHHHHCSEEEECC-TTTC-------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred ccc-cccccCcceEEEEcc-eecc-------hHHHHHHHHHHHhCCCCcEEEEec
Confidence 876 54433 47777754 4455 788899999999999999998755
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.49 E-value=4.9e-14 Score=116.82 Aligned_cols=130 Identities=18% Similarity=0.136 Sum_probs=100.0
Q ss_pred eeccchhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCC
Q 025475 32 WYQRYSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDM 108 (252)
Q Consensus 32 ~~~~~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~ 108 (252)
++......+..+...++++.+|||+|||+|.++..++..|..+|+++|+|+.+++.+++++..+ ++++++++|+.+.
T Consensus 128 ~flDqr~~r~~~~~~~~~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~~~d~~~~ 207 (324)
T d2as0a2 128 FFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVGSAFEE 207 (324)
T ss_dssp CCSTTHHHHHHHGGGCCTTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred cccchhhHHHHHHhhcCCCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHHcCCCccceeeechhhhh
Confidence 4444556677888888889999999999999999999988779999999999999999998543 2678999998764
Q ss_pred CC---CCCCCeeEEEeccchhhhcCCC----CChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 109 SF---FEDESFDAVIDKGTLDSLMCGT----NAPISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 109 ~~---~~~~~~D~v~~~~~l~~~~~~~----~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
.. ....+||+|+++.+.... .. ....+...++..+.++|+|||.|+++++...
T Consensus 208 ~~~~~~~~~~fD~Vi~DpP~~~~--~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~~s~s~~ 267 (324)
T d2as0a2 208 MEKLQKKGEKFDIVVLDPPAFVQ--HEKDLKAGLRAYFNVNFAGLNLVKDGGILVTCSCSQH 267 (324)
T ss_dssp HHHHHHTTCCEEEEEECCCCSCS--SGGGHHHHHHHHHHHHHHHHTTEEEEEEEEEEECCTT
T ss_pred hHHHHhccCCCCchhcCCccccC--CHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEEeCCcc
Confidence 21 245689999998763221 00 0012346678888999999999999887654
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=99.46 E-value=3e-14 Score=114.85 Aligned_cols=109 Identities=14% Similarity=0.251 Sum_probs=86.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
...+.+|||+|||+|..+..++... ..+++++|+|+.+++.|+++.... .++++++.|+.+. ..+.+||+|++|.
T Consensus 106 ~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~--~~~~~fDlIvsNP 183 (274)
T d2b3ta1 106 PEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSA--LAGQQFAMIVSNP 183 (274)
T ss_dssp CSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGG--GTTCCEEEEEECC
T ss_pred cccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHhCcccceeeecccccc--cCCCceeEEEecc
Confidence 3456689999999999999998764 669999999999999999998542 3799999998775 4567899999998
Q ss_pred chhhh----------cCC--------CCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 124 TLDSL----------MCG--------TNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 124 ~l~~~----------~~~--------~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
++... .+. ..+.....++++.+.++|++||.+++
T Consensus 184 PYi~~~~~~~~~~v~~~eP~~AL~~g~dGl~~~~~i~~~a~~~L~~~G~l~l 235 (274)
T d2b3ta1 184 PYIDEQDPHLQQGDVRFEPLTALVAADSGMADIVHIIEQSRNALVSGGFLLL 235 (274)
T ss_dssp CCBCTTCHHHHSSGGGSSCSTTTBCHHHHTHHHHHHHHHHGGGEEEEEEEEE
T ss_pred hhhhhhhhcccccccccchhhhcccccccchHHHHHHHHHHHhcCCCCEEEE
Confidence 75421 011 01224457889999999999999887
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.46 E-value=9.9e-14 Score=111.27 Aligned_cols=110 Identities=14% Similarity=0.144 Sum_probs=89.0
Q ss_pred hhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCC
Q 025475 38 ALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 38 ~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~ 114 (252)
.-...+...+.++.+|||+|||+|.++..++..|.++|+++|+++.+++.++++++.+ ++++++++|+.++. ..+
T Consensus 96 ~er~ri~~~~~~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~--~~~ 173 (260)
T d2frna1 96 KERVRMAKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFP--GEN 173 (260)
T ss_dssp HHHHHHHHHCCTTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCC--CCS
T ss_pred HHHHHHHhhcCCccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhc--cCC
Confidence 3345567778899999999999999999999988669999999999999999998532 36899999999885 567
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.||.|+++... ....++..+.++|++||.+.+...
T Consensus 174 ~~D~Ii~~~p~-----------~~~~~l~~a~~~l~~gG~lh~~~~ 208 (260)
T d2frna1 174 IADRILMGYVV-----------RTHEFIPKALSIAKDGAIIHYHNT 208 (260)
T ss_dssp CEEEEEECCCS-----------SGGGGHHHHHHHEEEEEEEEEEEE
T ss_pred CCCEEEECCCC-----------chHHHHHHHHhhcCCCCEEEEEec
Confidence 89999986442 223456778889999999866543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.44 E-value=1.3e-13 Score=110.95 Aligned_cols=101 Identities=13% Similarity=0.246 Sum_probs=83.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
+.++.+|||+|||+|.++..+++. + .++++++|+++++++.|+++++..+ ++.+...|+... +....+|.|+.
T Consensus 101 i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~--~~~~~~D~V~~ 178 (266)
T d1o54a_ 101 VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEG--FDEKDVDALFL 178 (266)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGC--CSCCSEEEEEE
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEecccccc--ccccceeeeEe
Confidence 678999999999999999999986 3 5699999999999999999986533 577777776554 45667999875
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++ .++..+++++.++|||||.+++..+.
T Consensus 179 -----d~-------p~p~~~l~~~~~~LKpGG~lv~~~P~ 206 (266)
T d1o54a_ 179 -----DV-------PDPWNYIDKCWEALKGGGRFATVCPT 206 (266)
T ss_dssp -----CC-------SCGGGTHHHHHHHEEEEEEEEEEESS
T ss_pred -----cC-------CCHHHHHHHHHhhcCCCCEEEEEeCc
Confidence 35 67788999999999999999987754
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.43 E-value=1.3e-13 Score=101.84 Aligned_cols=103 Identities=16% Similarity=0.145 Sum_probs=82.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.+.+|||+|||+|.++..++.+|..+|+++|.++.+++.+++++... ++++++++|+.+......++||+|++.+++
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~DPPy 93 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCLTGRFDLVFLDPPY 93 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHBCSCEEEEEECCSS
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhcccccchhhhcccccccccccccccceeEechhh
Confidence 47799999999999999999999889999999999999999998653 268999999887532456789999998764
Q ss_pred hhhcCCCCChhhHHHHHHHHH--HcccCCcEEEEEE
Q 025475 126 DSLMCGTNAPISASQMLGEVS--RLLKPGGIYMLIT 159 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~i~~ 159 (252)
.. ......+..+. ++|+++|.+++-.
T Consensus 94 ~~--------~~~~~~l~~i~~~~~L~~~g~iiiE~ 121 (152)
T d2esra1 94 AK--------ETIVATIEALAAKNLLSEQVMVVCET 121 (152)
T ss_dssp HH--------HHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred cc--------chHHHHHHHHHHCCCcCCCeEEEEEe
Confidence 42 34455556553 5799999988744
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.42 E-value=2e-13 Score=112.60 Aligned_cols=103 Identities=21% Similarity=0.334 Sum_probs=81.5
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcC-------------CCCCeEEEccccCCCC-
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEE-------------IPQLKYLQMDVRDMSF- 110 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~-------------~~~v~~~~~d~~~~~~- 110 (252)
+.++.+|||+|||+|.++..+++. + .++|+++|+++++++.|+++++. ..++.+...|+.+...
T Consensus 96 i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~~~nv~~~~~di~~~~~~ 175 (324)
T d2b25a1 96 INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATED 175 (324)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEESCTTCCC--
T ss_pred CCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhccccceeEEecchhhcccc
Confidence 678999999999999999999986 3 56899999999999999998742 2378999999987642
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..+..||.|++. + .++..++.++.++|||||.+++..++
T Consensus 176 ~~~~~fD~V~LD-----~-------p~P~~~l~~~~~~LKpGG~lv~~~P~ 214 (324)
T d2b25a1 176 IKSLTFDAVALD-----M-------LNPHVTLPVFYPHLKHGGVCAVYVVN 214 (324)
T ss_dssp -----EEEEEEC-----S-------SSTTTTHHHHGGGEEEEEEEEEEESS
T ss_pred cCCCCcceEeec-----C-------cCHHHHHHHHHHhccCCCEEEEEeCC
Confidence 456789999863 3 44566899999999999999886643
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=99.40 E-value=3.9e-13 Score=110.73 Aligned_cols=127 Identities=13% Similarity=0.083 Sum_probs=95.7
Q ss_pred chhhHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C--CCCeEEEccccCCCC-
Q 025475 36 YSALRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I--PQLKYLQMDVRDMSF- 110 (252)
Q Consensus 36 ~~~l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~--~~v~~~~~d~~~~~~- 110 (252)
.......+...+.++.+|||++||+|.++..++..|..+|++||+|+.+++.++++++. . .+++++++|+.+...
T Consensus 131 qR~~r~~l~~~~~~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~ 210 (317)
T d2b78a2 131 QRQVRNELINGSAAGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKY 210 (317)
T ss_dssp GHHHHHHHHHTTTBTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHH
Confidence 34444556666778899999999999999998888877899999999999999999842 2 368999999977521
Q ss_pred --CCCCCeeEEEeccchhhh--cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 111 --FEDESFDAVIDKGTLDSL--MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 111 --~~~~~~D~v~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
....+||+|++..+...- ........+..++++.+.++|+|||.|+++++..
T Consensus 211 ~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~scs~ 266 (317)
T d2b78a2 211 ARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTNAA 266 (317)
T ss_dssp HHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEECCT
T ss_pred HHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCc
Confidence 234689999998652110 0000112456788999999999999999988763
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.37 E-value=1.4e-12 Score=101.38 Aligned_cols=106 Identities=14% Similarity=0.170 Sum_probs=84.7
Q ss_pred HHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCe
Q 025475 40 RPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESF 116 (252)
Q Consensus 40 ~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~ 116 (252)
..++... +.++.+|||+|||+|..+..++..-..+|+++|.++.+++.+++++.. ..|+.++++|..+.. ...++|
T Consensus 68 a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~~gd~~~g~-~~~~pf 146 (215)
T d1jg1a_ 68 AIMLEIANLKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERAGVKNVHVILGDGSKGF-PPKAPY 146 (215)
T ss_dssp HHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC-GGGCCE
T ss_pred HHHHHhhccCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHcCCceeEEEECccccCC-cccCcc
Confidence 3444333 678889999999999999999876224799999999999999999864 358999999998764 467789
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|+|++...+.++ +. .+.+.|++||++++..
T Consensus 147 D~Iiv~~a~~~i-----p~--------~l~~qL~~gGrLv~pv 176 (215)
T d1jg1a_ 147 DVIIVTAGAPKI-----PE--------PLIEQLKIGGKLIIPV 176 (215)
T ss_dssp EEEEECSBBSSC-----CH--------HHHHTEEEEEEEEEEE
T ss_pred eeEEeecccccC-----CH--------HHHHhcCCCCEEEEEE
Confidence 999998888776 21 2456799999998754
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=99.36 E-value=5e-13 Score=110.32 Aligned_cols=112 Identities=20% Similarity=0.194 Sum_probs=86.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC---CCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF---FEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~---~~~~~~D~v~~~~ 123 (252)
++.+|||++||+|.++..++.. ..+|+++|+|+.+++.++++++. ..+++++++|+.+... ...++||+|+++.
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g-~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~Dp 223 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALG-FREVVAVDSSAEALRRAEENARLNGLGNVRVLEANAFDLLRRLEKEGERFDLVVLDP 223 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHH-EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEESCHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCCeeeccCCCCcHHHHHHHhc-CCcEEeecchHHHHHHHHHHHHHcCCCCcceeeccHHHHhhhhHhhhcCCCEEEEcC
Confidence 5779999999999999988764 45999999999999999999854 3478999999877421 3456899999987
Q ss_pred chhhhcCCCC----ChhhHHHHHHHHHHcccCCcEEEEEEcCCh
Q 025475 124 TLDSLMCGTN----APISASQMLGEVSRLLKPGGIYMLITYGDP 163 (252)
Q Consensus 124 ~l~~~~~~~~----~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~ 163 (252)
+.... +.. ...+...++..+.++|+|||.|++++++..
T Consensus 224 P~~~~--~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~~scs~~ 265 (318)
T d1wxxa2 224 PAFAK--GKKDVERAYRAYKEVNLRAIKLLKEGGILATASCSHH 265 (318)
T ss_dssp CCSCC--STTSHHHHHHHHHHHHHHHHHTEEEEEEEEEEECCTT
T ss_pred Ccccc--chHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEeCCcc
Confidence 53221 000 113446788899999999999999887643
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=99.35 E-value=1.5e-12 Score=97.93 Aligned_cols=113 Identities=18% Similarity=0.278 Sum_probs=80.1
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCC---CCCCCC
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDM---SFFEDE 114 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~---~~~~~~ 114 (252)
+..++...++++.+|||+|||+|.++..++.+|. +++++|.++.+++.++++++..+ ..++...+.... ......
T Consensus 31 lf~~l~~~~~~g~~vLDl~~G~G~~~i~a~~~ga-~vv~vD~~~~a~~~~~~N~~~~~~~~~v~~~~~d~~~~~~~~~~~ 109 (171)
T d1ws6a1 31 LFDYLRLRYPRRGRFLDPFAGSGAVGLEAASEGW-EAVLVEKDPEAVRLLKENVRRTGLGARVVALPVEVFLPEAKAQGE 109 (171)
T ss_dssp HHHHHHHHCTTCCEEEEETCSSCHHHHHHHHTTC-EEEEECCCHHHHHHHHHHHHHHTCCCEEECSCHHHHHHHHHHTTC
T ss_pred HHHHhhccccCCCeEEEeccccchhhhhhhhccc-hhhhcccCHHHHhhhhHHHHhhccccceeeeehhcccccccccCC
Confidence 3445667788889999999999999999999986 89999999999999999986432 334554444321 113456
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+||+|+++.+++.- -.+....++. ..+|++||++++..
T Consensus 110 ~fD~If~DPPY~~~-----~~~~l~~l~~--~~ll~~~g~ivie~ 147 (171)
T d1ws6a1 110 RFTVAFMAPPYAMD-----LAALFGELLA--SGLVEAGGLYVLQH 147 (171)
T ss_dssp CEEEEEECCCTTSC-----TTHHHHHHHH--HTCEEEEEEEEEEE
T ss_pred ccceeEEccccccC-----HHHHHHHHHH--cCCcCCCeEEEEEe
Confidence 89999998875421 1123333332 35899999887644
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.33 E-value=1.5e-12 Score=101.91 Aligned_cols=100 Identities=19% Similarity=0.237 Sum_probs=81.1
Q ss_pred hCCCCCcEEEEcccCcHhHHHHHHc----C---CCcEEEEeCCHHHHHHHHHhhc-------CCCCCeEEEccccCCCCC
Q 025475 46 YIPTSSRVLMVGCGNALMSEDMVKD----G---YEDIVNIDISSVAIDMMKMKYE-------EIPQLKYLQMDVRDMSFF 111 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G~~~~~l~~~----~---~~~v~~vD~s~~~i~~a~~~~~-------~~~~v~~~~~d~~~~~~~ 111 (252)
.+.++.+|||+|||+|..+..+++. | ..+|+++|+++++++.+++++. +..++.+..+|..+.. .
T Consensus 77 ~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~~d~~~~~-~ 155 (223)
T d1r18a_ 77 HLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVEGDGRKGY-P 155 (223)
T ss_dssp TCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEESCGGGCC-G
T ss_pred ccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEeccccccc-c
Confidence 4678889999999999999888775 2 2379999999999999988753 2348999999998765 4
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+.++||+|++...+.++ + ..+.+.|++||++++..
T Consensus 156 ~~~~fD~Iiv~~a~~~~-------p------~~l~~~Lk~gG~lV~pv 190 (223)
T d1r18a_ 156 PNAPYNAIHVGAAAPDT-------P------TELINQLASGGRLIVPV 190 (223)
T ss_dssp GGCSEEEEEECSCBSSC-------C------HHHHHTEEEEEEEEEEE
T ss_pred cccceeeEEEEeechhc-------h------HHHHHhcCCCcEEEEEE
Confidence 56789999999888777 2 23568999999998754
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.32 E-value=1.8e-11 Score=93.63 Aligned_cols=105 Identities=12% Similarity=0.179 Sum_probs=76.7
Q ss_pred CCCcEEEEcccCcHhHHH----HHHc----C-CCcEEEEeCCHHHHHHHHHhh------------------cCC------
Q 025475 49 TSSRVLMVGCGNALMSED----MVKD----G-YEDIVNIDISSVAIDMMKMKY------------------EEI------ 95 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~----l~~~----~-~~~v~~vD~s~~~i~~a~~~~------------------~~~------ 95 (252)
+..+|+++|||+|.-... +.+. + ..+++|+|+++.+++.|+.-. ...
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g~y~~~~~~~~~~~~~~~yf~~~~~~~~~ 103 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG 103 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcCcccHHHHhhhhHHHHhhceeecCCCccc
Confidence 445999999999984433 3332 1 236999999999999998532 000
Q ss_pred ---------CCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 96 ---------PQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 96 ---------~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
..+.+...+.........+.||+|+|.+++.++ +++...++++++++.|+|||+|++.
T Consensus 104 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fDvI~CRNVLiYf-----~~~~~~~vl~~l~~~L~pGG~L~lG 170 (193)
T d1af7a2 104 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRNVMIYF-----DKTTQEDILRRFVPLLKPDGLLFAG 170 (193)
T ss_dssp EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECSSGGGS-----CHHHHHHHHHHHGGGEEEEEEEEEC
T ss_pred eeehHHHHHHHHHHhhhhccccccCCCCCccEEEeehhHHhc-----CHHHHHHHHHHHHHHhCCCcEEEEe
Confidence 012344444444322345789999999999999 8888999999999999999998874
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=99.30 E-value=2.9e-12 Score=97.41 Aligned_cols=103 Identities=5% Similarity=0.028 Sum_probs=82.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+.+|||++||+|.++..++.+|..+|+.||.++.+++.++++++. ..++++++.|+.++......+||+|++.+++.
T Consensus 43 ~~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~~~~~fDlIf~DPPY~ 122 (183)
T d2fpoa1 43 VDAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQKGTPHNIVFVDPPFR 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSSCCCCEEEEEECCSSS
T ss_pred chhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccccccccCEEEEcCccc
Confidence 4669999999999999999999988999999999999999998853 34788999998775434567899999998755
Q ss_pred hhcCCCCChhhHHHHHHHHH--HcccCCcEEEEEE
Q 025475 127 SLMCGTNAPISASQMLGEVS--RLLKPGGIYMLIT 159 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~i~~ 159 (252)
. ......+..+. .+|+++|.+++-.
T Consensus 123 ~--------~~~~~~l~~l~~~~~L~~~~iIiiE~ 149 (183)
T d2fpoa1 123 R--------GLLEETINLLEDNGWLADEALIYVES 149 (183)
T ss_dssp T--------TTHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred c--------chHHHHHHHHHHCCCCCCCeEEEEEe
Confidence 3 23455566665 4699999888743
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.29 E-value=5.6e-12 Score=96.39 Aligned_cols=71 Identities=23% Similarity=0.346 Sum_probs=62.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
.+.+|||+|||+|.++..++..|..+|+++|+++.+++.|+++. .++.++++|+.+++ ++||+|+++.++.
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar~N~---~~~~~~~~D~~~l~----~~fD~Vi~NPPfg 118 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNC---GGVNFMVADVSEIS----GKYDTWIMNPPFG 118 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHC---TTSEEEECCGGGCC----CCEEEEEECCCC-
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHHHcc---ccccEEEEehhhcC----CcceEEEeCcccc
Confidence 47799999999999999999988778999999999999999987 46899999998764 5799999998764
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=5.8e-12 Score=106.38 Aligned_cols=113 Identities=13% Similarity=0.152 Sum_probs=81.4
Q ss_pred hHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC-----------CCCCeE-EEcc
Q 025475 39 LRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE-----------IPQLKY-LQMD 104 (252)
Q Consensus 39 l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~-----------~~~v~~-~~~d 104 (252)
+.+++... +.++.++||+|||+|..+..++.. +..+++|||+++.+++.|+++.+. ...+.+ ..++
T Consensus 205 i~~Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~~~~~g~~~~~~~~~~~~~ 284 (406)
T d1u2za_ 205 LSDVYQQCQLKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKS 284 (406)
T ss_dssp HHHHHHHTTCCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSC
T ss_pred HHHHHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhhhhhhccccccceeeeeec
Confidence 34444443 678889999999999999999877 556899999999999999987632 112222 2333
Q ss_pred ccCCCC--CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 105 VRDMSF--FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 105 ~~~~~~--~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..+.+. ..-..+|+|+++. +.|. +++.+.+.++.+.|||||++++..
T Consensus 285 f~~~~~~d~~~~~adVV~inn-~~f~-------~~l~~~L~ei~r~LKPGGrIVs~~ 333 (406)
T d1u2za_ 285 FVDNNRVAELIPQCDVILVNN-FLFD-------EDLNKKVEKILQTAKVGCKIISLK 333 (406)
T ss_dssp STTCHHHHHHGGGCSEEEECC-TTCC-------HHHHHHHHHHHTTCCTTCEEEESS
T ss_pred hhhccccccccccceEEEEec-ccCc-------hHHHHHHHHHHHhcCCCcEEEEec
Confidence 333220 0113578888764 3455 788999999999999999998755
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.26 E-value=1.5e-11 Score=93.74 Aligned_cols=118 Identities=17% Similarity=0.260 Sum_probs=93.7
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCC----CCCCCCeeEEEe
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMS----FFEDESFDAVID 121 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~----~~~~~~~D~v~~ 121 (252)
.++..++|++||+|..+..+++. ...+++|+|.++.|++.+++++... .++.++++++.++. .+..+++|.|+.
T Consensus 22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~ 101 (192)
T d1m6ya2 22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEFSDRVSLFKVSYREADFLLKTLGIEKVDGILM 101 (192)
T ss_dssp CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGGTTTEEEEECCGGGHHHHHHHTTCSCEEEEEE
T ss_pred CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccccccccchhHHHhhHHHHHHHcCCCCcceeee
Confidence 46779999999999999999987 3569999999999999999998764 47999999987753 144578999998
Q ss_pred ccch--hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhh
Q 025475 122 KGTL--DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 122 ~~~l--~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
...+ +++-...+........+..+.++|++||.+++.++.....
T Consensus 102 DlGvSs~Qld~~~r~~~~~~~~L~~a~~~Lk~gG~l~ii~f~s~Ed 147 (192)
T d1m6ya2 102 DLGVSTYQLKGENRELENLKEFLKKAEDLLNPGGRIVVISFHSLED 147 (192)
T ss_dssp ECSCCHHHHHTSHTHHHHHHHHHHHGGGGEEEEEEEEEEESSHHHH
T ss_pred ccchhHhhhhhhhccchhHHHHHHHHHHhcCCCCeeeeeccccHHH
Confidence 7543 1221222344677889999999999999999999876554
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=99.25 E-value=8.7e-12 Score=101.51 Aligned_cols=122 Identities=15% Similarity=0.139 Sum_probs=88.0
Q ss_pred hhhHHHHHhh---CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC--C--CCCeEEEccccCCC
Q 025475 37 SALRPFVRKY---IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE--I--PQLKYLQMDVRDMS 109 (252)
Q Consensus 37 ~~l~~~~~~~---~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~--~--~~v~~~~~d~~~~~ 109 (252)
...+..+... ..++.+|||++||+|.++..++..|. +|++||.|+.+++.|++++.. . .++++++.|+.++.
T Consensus 117 r~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~GA-~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l 195 (309)
T d2igta1 117 IVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAAGA-EVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFI 195 (309)
T ss_dssp HHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHH
T ss_pred hHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhCCC-eEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhH
Confidence 3344444433 45677999999999999999998876 899999999999999998742 2 25899999998753
Q ss_pred C---CCCCCeeEEEeccchhhhcCCCC-----ChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 110 F---FEDESFDAVIDKGTLDSLMCGTN-----APISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 110 ~---~~~~~~D~v~~~~~l~~~~~~~~-----~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
. ....+||+|+++.+-... +.. -..+...++..+.++|+|||.+++.+.+
T Consensus 196 ~~~~~~~~~fD~IilDPP~f~~--~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~ll~t~~ 253 (309)
T d2igta1 196 QREERRGSTYDIILTDPPKFGR--GTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY 253 (309)
T ss_dssp HHHHHHTCCBSEEEECCCSEEE--CTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC
T ss_pred HHHhhcCCCCCEEEECCCcccc--cccchhHHHHHHHHHHHHHHHHhcCCCCCEEEEecC
Confidence 1 234689999998652211 100 0134566778889999999976665543
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.23 E-value=2.6e-11 Score=93.33 Aligned_cols=75 Identities=20% Similarity=0.337 Sum_probs=64.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC-CCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP-QLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~-~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
.+.+|||+|||+|.++..++..|..+|+++|+++.+++.+++++.... +.+++++|+.++. ++||+|+++.++..
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~~N~~~~~~~~~~~~~d~~~~~----~~fD~Vi~nPP~~~ 121 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKFKVFIGDVSEFN----SRVDIVIMNPPFGS 121 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGGTTSEEEEESCGGGCC----CCCSEEEECCCCSS
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHHHHHHHcCCCceEEECchhhhC----CcCcEEEEcCcccc
Confidence 567999999999999999998887799999999999999999986543 6788888887653 47999999988654
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.21 E-value=1.6e-11 Score=97.32 Aligned_cols=100 Identities=17% Similarity=0.199 Sum_probs=82.4
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+...+|||+|||+|.++..++++. ..+++.+|+ |..++. .....+++++.+|+.+. .+ ..|++++..++|
T Consensus 80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~----~~~~~ri~~~~gd~~~~--~p--~~D~~~l~~vLh 150 (244)
T d1fp1d2 80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIEN----APPLSGIEHVGGDMFAS--VP--QGDAMILKAVCH 150 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTT----CCCCTTEEEEECCTTTC--CC--CEEEEEEESSGG
T ss_pred cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhc----cCCCCCeEEecCCcccc--cc--cceEEEEehhhh
Confidence 344699999999999999999884 558999998 554432 22235899999999764 33 469999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++ ++++..++|+++++.|+|||.++|.+..
T Consensus 151 ~~-----~de~~~~iL~~~~~aL~pgg~llI~e~v 180 (244)
T d1fp1d2 151 NW-----SDEKCIEFLSNCHKALSPNGKVIIVEFI 180 (244)
T ss_dssp GS-----CHHHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred hC-----CHHHHHHHHHHHHHHcCCCcEEEEEEEE
Confidence 99 8899999999999999999999999853
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=99.19 E-value=1.2e-11 Score=93.68 Aligned_cols=102 Identities=16% Similarity=0.157 Sum_probs=81.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCC---CCCCCeeEEEec
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSF---FEDESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~---~~~~~~D~v~~~ 122 (252)
.+.+|||++||+|.++..++.+|..+|++||.++.+++.++++++. ..++++++.|+.+... ....+||+|++.
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIflD 120 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYEEKLQFDLVLLD 120 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcccCCCcceEEec
Confidence 5779999999999999999999988999999999999999998753 2368999999876421 234579999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHH--HcccCCcEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVS--RLLKPGGIYMLI 158 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~i~ 158 (252)
+++.. ......+..+. .+|+++|.+++-
T Consensus 121 PPY~~--------~~~~~~l~~i~~~~~L~~~giIi~E 150 (182)
T d2fhpa1 121 PPYAK--------QEIVSQLEKMLERQLLTNEAVIVCE 150 (182)
T ss_dssp CCGGG--------CCHHHHHHHHHHTTCEEEEEEEEEE
T ss_pred hhhhh--------hHHHHHHHHHHHCCCCCCCEEEEEE
Confidence 87643 34556677664 479999988763
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=99.17 E-value=4.6e-11 Score=95.69 Aligned_cols=105 Identities=13% Similarity=0.110 Sum_probs=76.5
Q ss_pred CCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
..+++|+|||+|..+..++.....+|+++|+|+.+++.|+++.+..+ ++.+...|..+......++||+|++|.++-
T Consensus 111 ~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVsNPPYI 190 (271)
T d1nv8a_ 111 IKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFKEKFASIEMILSNPPYV 190 (271)
T ss_dssp CCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGGGGTTTCCEEEECCCCB
T ss_pred ccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccccccCcccEEEEccccc
Confidence 45899999999999999887776699999999999999999986533 567788888775423346899999998743
Q ss_pred hhc----------------CCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 127 SLM----------------CGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 127 ~~~----------------~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
.-. .+..+......+ +.++|++||.+++
T Consensus 191 ~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i---~~~~L~~~G~l~~ 234 (271)
T d1nv8a_ 191 KSSAHLPKDVLFEPPEALFGGEDGLDFYREF---FGRYDTSGKIVLM 234 (271)
T ss_dssp CGGGSCTTSCCCSCHHHHBCTTTSCHHHHHH---HHHCCCTTCEEEE
T ss_pred CcccccceeeeeccccccccccchHHHHHHH---HHHhcCCCCEEEE
Confidence 221 011122223343 4578999998765
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=99.08 E-value=1.8e-10 Score=91.09 Aligned_cols=100 Identities=15% Similarity=0.139 Sum_probs=81.9
Q ss_pred CCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
....+|+|+|||+|.++..++++. ..++++.|+ |..++.+ ....+++++.+|+++.. + .+|++++..++|
T Consensus 79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~----~~~~rv~~~~gD~f~~~--p--~aD~~~l~~vLH 149 (244)
T d1fp2a2 79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENL----SGSNNLTYVGGDMFTSI--P--NADAVLLKYILH 149 (244)
T ss_dssp TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC----CCBTTEEEEECCTTTCC--C--CCSEEEEESCGG
T ss_pred cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhC----cccCceEEEecCcccCC--C--CCcEEEEEeecc
Confidence 344589999999999999999884 559999998 5554432 22358999999998643 3 589999999999
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCC---cEEEEEEcC
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPG---GIYMLITYG 161 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~g---G~l~i~~~~ 161 (252)
++ ++++..++|+++++.|+|| |+++|.+..
T Consensus 150 dw-----~d~~~~~iL~~~~~al~pgg~~~~lli~e~~ 182 (244)
T d1fp2a2 150 NW-----TDKDCLRILKKCKEAVTNDGKRGKVTIIDMV 182 (244)
T ss_dssp GS-----CHHHHHHHHHHHHHHHSGGGCCCEEEEEECE
T ss_pred cC-----ChHHHHHHHHHHHHHcCcccCCcEEEEEEee
Confidence 99 8899999999999999998 778887753
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.02 E-value=5.9e-10 Score=89.67 Aligned_cols=109 Identities=19% Similarity=0.294 Sum_probs=83.8
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc------------CCCCCeEEEccccCCCCCCCC
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE------------EIPQLKYLQMDVRDMSFFEDE 114 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~------------~~~~v~~~~~d~~~~~~~~~~ 114 (252)
.+.+.+||.+|+|.|..+..++.++..++++||+++.+++.|++.+. ..++++++.+|+..+. -..+
T Consensus 70 ~~~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l-~~~~ 148 (276)
T d1mjfa_ 70 HPKPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFI-KNNR 148 (276)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHH-HHCC
T ss_pred CCCCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHH-hccC
Confidence 46677999999999999999988776689999999999999998763 2357999999998764 2456
Q ss_pred CeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+||+|++...-. . +.+..-....+++.+.+.|+|||.+++..
T Consensus 149 ~yDvIi~D~~~~-~--~~~~~L~t~eF~~~~~~~L~~~Gv~v~q~ 190 (276)
T d1mjfa_ 149 GFDVIIADSTDP-V--GPAKVLFSEEFYRYVYDALNNPGIYVTQA 190 (276)
T ss_dssp CEEEEEEECCCC-C-------TTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCEEEEeCCCC-C--CCcccccCHHHHHhhHhhcCCCceEEEec
Confidence 899999864321 1 11111223788999999999999998865
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=99.01 E-value=5.1e-10 Score=84.67 Aligned_cols=103 Identities=15% Similarity=0.176 Sum_probs=78.9
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCC----CCeEEEccccCCCC--CCCCCeeEEEec
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIP----QLKYLQMDVRDMSF--FEDESFDAVIDK 122 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~----~v~~~~~d~~~~~~--~~~~~~D~v~~~ 122 (252)
.+.+|||+.||+|.++..++.+|..+++.||.+..+++..+++++..+ ...+...|..+... ....+||+|++.
T Consensus 43 ~~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFlD 122 (183)
T d2ifta1 43 HQSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFLD 122 (183)
T ss_dssp TTCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEEC
T ss_pred ccceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEec
Confidence 456999999999999999999998899999999999999999885432 35666666544321 234579999999
Q ss_pred cchhhhcCCCCChhhHHHHHHHHH--HcccCCcEEEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVS--RLLKPGGIYMLIT 159 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~--~~L~~gG~l~i~~ 159 (252)
+++.. ......+..+. .+|+++|.+++-.
T Consensus 123 PPY~~--------~~~~~~l~~l~~~~~L~~~~liiiE~ 153 (183)
T d2ifta1 123 PPFHF--------NLAEQAISLLCENNWLKPNALIYVET 153 (183)
T ss_dssp CCSSS--------CHHHHHHHHHHHTTCEEEEEEEEEEE
T ss_pred hhHhh--------hhHHHHHHHHHHhCCcCCCcEEEEEe
Confidence 88653 24455666664 4799999888743
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=99.00 E-value=5.1e-10 Score=91.50 Aligned_cols=111 Identities=25% Similarity=0.301 Sum_probs=84.2
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc-------CCCCCeEEEccccCCCCCCCCCeeE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE-------EIPQLKYLQMDVRDMSFFEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~-------~~~~v~~~~~d~~~~~~~~~~~~D~ 118 (252)
.+.+.+||.+|.|.|..+..+++.. ..++++||+++.+++.|++.+. ..++++++.+|..++....+.+||+
T Consensus 75 ~~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDv 154 (312)
T d1uira_ 75 HPEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDV 154 (312)
T ss_dssp SSCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEE
T ss_pred CCCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccE
Confidence 4566799999999999999998874 5689999999999999999862 2458999999998864234568999
Q ss_pred EEeccchhhhcCCCCChh--hHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPI--SASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~--~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
|++..+=.+. ...+.. ....+++.+.+.|+|||.+++..
T Consensus 155 Ii~D~~dp~~--~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~~~ 195 (312)
T d1uira_ 155 VIIDLTDPVG--EDNPARLLYTVEFYRLVKAHLNPGGVMGMQT 195 (312)
T ss_dssp EEEECCCCBS--TTCGGGGGSSHHHHHHHHHTEEEEEEEEEEE
T ss_pred EEEeCCCccc--ccchhhhhhhHHHHHHHHHhcCCCceEEEec
Confidence 9975421100 000111 23678999999999999998754
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.99 E-value=7.5e-10 Score=85.95 Aligned_cols=102 Identities=13% Similarity=0.189 Sum_probs=81.5
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-----CCCCCCeeE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-----FFEDESFDA 118 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-----~~~~~~~D~ 118 (252)
...+|||+|||+|..+.++++. . .++++++|.++...+.|++++... .+++++.+|+.+.. ....++||+
T Consensus 59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~ 138 (219)
T d2avda1 59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAGEAGTFDV 138 (219)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTTCTTCEEE
T ss_pred CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhhhhcccCCccE
Confidence 4569999999999999999986 2 569999999999999999998532 36899999976532 124568999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+... +.+.....++.+.++|+|||.+++-..
T Consensus 139 ifiD~----------dk~~y~~~~~~~~~lL~~GGvii~Dn~ 170 (219)
T d2avda1 139 AVVDA----------DKENCSAYYERCLQLLRPGGILAVLRV 170 (219)
T ss_dssp EEECS----------CSTTHHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEeC----------CHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 99863 235567788889999999999988553
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.98 E-value=1.1e-09 Score=84.91 Aligned_cols=101 Identities=15% Similarity=0.177 Sum_probs=76.7
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCC-C----CCCCCeeE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMS-F----FEDESFDA 118 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~-~----~~~~~~D~ 118 (252)
++.+|||+|||+|..+..+++. . .++++++|+++.+++.++.++... .+++++.+|..+.. . ....+||+
T Consensus 56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~~D~ 135 (214)
T d2cl5a1 56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKKYDVDTLDM 135 (214)
T ss_dssp CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHHHSCCCCEEE
T ss_pred CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhhcccccccce
Confidence 3459999999999999999976 2 469999999999999999988542 36999999987642 1 23467999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
|++...-.. ......+.++.++|+|||++++
T Consensus 136 ifiD~~~~~--------~~~~~~l~~~~~lLkpGGvIv~ 166 (214)
T d2cl5a1 136 VFLDHWKDR--------YLPDTLLLEKCGLLRKGTVLLA 166 (214)
T ss_dssp EEECSCGGG--------HHHHHHHHHHTTCEEEEEEEEE
T ss_pred eeecccccc--------cccHHHHHHHhCccCCCcEEEE
Confidence 998743222 1223347778899999998765
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=98.96 E-value=1.9e-09 Score=84.58 Aligned_cols=79 Identities=11% Similarity=0.225 Sum_probs=67.1
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.++.+|||+|||+|.++..+++.+ .+++++|+++.+++.+++++...++++++++|+.+++ ++......|+++.+++
T Consensus 19 ~~~~d~VlEIGpG~G~LT~~Ll~~~-~~v~avE~D~~l~~~l~~~~~~~~n~~i~~~D~l~~~-~~~~~~~~vv~NLPYn 96 (235)
T d1qama_ 19 LNEHDNIFEIGSGKGHFTLELVQRC-NFVTAIEIDHKLCKTTENKLVDHDNFQVLNKDILQFK-FPKNQSYKIFGNIPYN 96 (235)
T ss_dssp CCTTCEEEEECCTTSHHHHHHHHHS-SEEEEECSCHHHHHHHHHHTTTCCSEEEECCCGGGCC-CCSSCCCEEEEECCGG
T ss_pred CCCCCeEEEECCCchHHHHHHHhCc-CceEEEeeccchHHHHHHHhhcccchhhhhhhhhhcc-ccccccceeeeeehhh
Confidence 4577899999999999999999986 4899999999999999999887789999999999887 5554455677776665
Q ss_pred h
Q 025475 127 S 127 (252)
Q Consensus 127 ~ 127 (252)
-
T Consensus 97 I 97 (235)
T d1qama_ 97 I 97 (235)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=4.4e-09 Score=83.29 Aligned_cols=79 Identities=10% Similarity=0.074 Sum_probs=60.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCC-----CCCCCCeeEE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMS-----FFEDESFDAV 119 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~-----~~~~~~~D~v 119 (252)
+..++||+|||+|..+..++..- ..+++|+|+++.+++.|+++.+..+ ++.++..+..... ...+++||+|
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~fD~i 140 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDALKEESEIIYDFC 140 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTSTTCCSCCBSEE
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhhhhhcccCceeEE
Confidence 34589999999999999988762 4599999999999999999986432 5666665543321 1235679999
Q ss_pred Eeccchhh
Q 025475 120 IDKGTLDS 127 (252)
Q Consensus 120 ~~~~~l~~ 127 (252)
+||.+++.
T Consensus 141 vsNPPY~~ 148 (250)
T d2h00a1 141 MCNPPFFA 148 (250)
T ss_dssp EECCCCC-
T ss_pred EecCcccc
Confidence 99999875
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.91 E-value=2.7e-09 Score=86.18 Aligned_cols=112 Identities=16% Similarity=0.265 Sum_probs=84.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc------CCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~------~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.+.+.+||-+|.|.|..+..++++. ..++++||+++.+++.+++.+. ..++++++.+|..++..-.+++||+|
T Consensus 87 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 166 (295)
T d1inla_ 87 HPNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVI 166 (295)
T ss_dssp SSSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEE
T ss_pred CCCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEE
Confidence 3566799999999999999999874 5689999999999999999763 24689999999988643445689999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
++..+-... +....-....+++.+++.|+|||.+++...
T Consensus 167 i~D~~dp~~--~~~~~L~t~efy~~~~~~L~~~Gi~v~q~~ 205 (295)
T d1inla_ 167 IIDSTDPTA--GQGGHLFTEEFYQACYDALKEDGVFSAETE 205 (295)
T ss_dssp EEEC------------CCSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEcCCCCCc--CchhhhccHHHHHHHHhhcCCCcEEEEecC
Confidence 986432111 000111247899999999999999988654
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.90 E-value=2.7e-09 Score=84.25 Aligned_cols=99 Identities=16% Similarity=0.120 Sum_probs=80.0
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
...+|+|+|||+|.++..+++.. ..+++++|+.+ .++. ....++++++..|+++. .+ ..|++++..++|.
T Consensus 81 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~----~~~~~r~~~~~~d~~~~--~P--~ad~~~l~~vlh~ 151 (243)
T d1kyza2 81 GLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIED----APSYPGVEHVGGDMFVS--IP--KADAVFMKWICHD 151 (243)
T ss_dssp SCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTT----CCCCTTEEEEECCTTTC--CC--CCSCEECSSSSTT
T ss_pred CCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhh----cccCCceEEeccccccc--CC--CcceEEEEEEeec
Confidence 34589999999999999999984 56899999954 3322 22235799999998764 33 3678889999999
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
. ++++...+|+++++.|+|||.+++.+..
T Consensus 152 ~-----~d~~~~~iL~~~~~al~pgg~~li~d~~ 180 (243)
T d1kyza2 152 W-----SDEHCLKFLKNCYEALPDNGKVIVAECI 180 (243)
T ss_dssp S-----CHHHHHHHHHHHHHHCCSSSCEEEEECE
T ss_pred C-----CHHHHHHHHHHHHHhcCCCceEEEEEEE
Confidence 9 8899999999999999999999998753
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=98.85 E-value=4.8e-09 Score=84.05 Aligned_cols=110 Identities=19% Similarity=0.281 Sum_probs=85.9
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc------CCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~------~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.+.+.+||-+|.|.|..+..++++ +..+++.||+++.+++.|++.+. ..++++++.+|........+.+||+|
T Consensus 73 ~~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvI 152 (274)
T d1iy9a_ 73 HPNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVI 152 (274)
T ss_dssp SSSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEE
T ss_pred cCCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEE
Confidence 456679999999999999999987 46699999999999999999863 24689999999887542345689999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+...+-.. +.+..-.-..+++.+.+.|+|||.++...
T Consensus 153 i~D~~~p~---~~~~~L~t~eFy~~~~~~L~~~Gv~v~q~ 189 (274)
T d1iy9a_ 153 MVDSTEPV---GPAVNLFTKGFYAGIAKALKEDGIFVAQT 189 (274)
T ss_dssp EESCSSCC---SCCCCCSTTHHHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCC---CcchhhccHHHHHHHHhhcCCCceEEEec
Confidence 98753211 11111235788999999999999998765
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.84 E-value=5.3e-09 Score=84.18 Aligned_cols=112 Identities=20% Similarity=0.289 Sum_probs=84.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhc------CCCCCeEEEccccCCCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~------~~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.+.+.+||-+|.|.|..+..+++. +..++++||+++.+++.|++.+. ..++++++.+|...+.....++||+|
T Consensus 76 ~~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI 155 (285)
T d2o07a1 76 HPNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVI 155 (285)
T ss_dssp SSSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEE
T ss_pred CcCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEE
Confidence 456679999999999999999987 46699999999999999999863 24689999999887642345689999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++... +.. +.+..-....+++.+.+.|+|||.+++....
T Consensus 156 i~D~~-~p~--~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~s 194 (285)
T d2o07a1 156 ITDSS-DPM--GPAESLFKESYYQLMKTALKEDGVLCCQGEC 194 (285)
T ss_dssp EEECC--------------CHHHHHHHHHEEEEEEEEEEEEC
T ss_pred EEcCC-CCC--CcccccccHHHHHHHHHhcCCCCeEEEeccc
Confidence 98643 111 1111123467899999999999999887543
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.82 E-value=1.3e-08 Score=82.06 Aligned_cols=111 Identities=23% Similarity=0.388 Sum_probs=85.6
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhc------CCCCCeEEEccccCCC-CCCCCCeeE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMS-FFEDESFDA 118 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~------~~~~v~~~~~d~~~~~-~~~~~~~D~ 118 (252)
.+.+.+||-+|.|.|..+..+++.. ..++++||+++.+++.+++.+. ..++++++.+|..+.. ...+++||+
T Consensus 78 ~~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDv 157 (290)
T d1xj5a_ 78 IPNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDA 157 (290)
T ss_dssp SSCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEE
T ss_pred CCCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccE
Confidence 4566799999999999999999884 5689999999999999999763 2468999999987753 134568999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+...+-. . +.+..-....+++.+.+.|+|||.+++...
T Consensus 158 Ii~D~~dp-~--~~~~~L~t~eF~~~~~~~L~~~Gi~v~q~~ 196 (290)
T d1xj5a_ 158 VIVDSSDP-I--GPAKELFEKPFFQSVARALRPGGVVCTQAE 196 (290)
T ss_dssp EEECCCCT-T--SGGGGGGSHHHHHHHHHHEEEEEEEEEECC
T ss_pred EEEcCCCC-C--CcchhhCCHHHHHHHHHhcCCCcEEEEecC
Confidence 99864311 1 111112347789999999999999998764
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.82 E-value=5.1e-09 Score=84.96 Aligned_cols=110 Identities=21% Similarity=0.291 Sum_probs=82.0
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC------CCCCeEEEccccCCCCCCCCCeeEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE------IPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~------~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.+.+.+||-+|.|.|..+..++++. ..++++||+++.+++.+++.+.. .++++++.+|...+......+||+|
T Consensus 104 ~~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvI 183 (312)
T d2b2ca1 104 HPDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVI 183 (312)
T ss_dssp SSSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEE
T ss_pred CCCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEE
Confidence 4566799999999999999999874 56899999999999999998742 3689999999987642345689999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++..+-.. +.+..-....+++.+.+.|+|||.++...
T Consensus 184 I~D~~dp~---~~~~~L~t~eFy~~~~~~L~~~Gi~v~q~ 220 (312)
T d2b2ca1 184 ITDSSDPV---GPAESLFGQSYYELLRDALKEDGILSSQG 220 (312)
T ss_dssp EECCC----------------HHHHHHHHEEEEEEEEEEC
T ss_pred EEcCCCCC---CcchhhhhHHHHHHHHhhcCCCcEEEEec
Confidence 98754211 11122234778999999999999998865
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.81 E-value=3.6e-09 Score=82.41 Aligned_cols=101 Identities=10% Similarity=0.077 Sum_probs=80.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCC---CCeEEEccccCCC-CC-----CCCCee
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIP---QLKYLQMDVRDMS-FF-----EDESFD 117 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~---~v~~~~~d~~~~~-~~-----~~~~~D 117 (252)
...+|||+|+++|..+..+++. + .++++.+|.++...+.|+++++..+ +++++.+++.+.- .+ ..++||
T Consensus 59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD 138 (227)
T d1susa1 59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEKNHGSYD 138 (227)
T ss_dssp TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHCGGGTTCBS
T ss_pred CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHHhccccCCcee
Confidence 4569999999999999999975 2 5699999999999999999986433 6999999987642 11 246899
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+... +.......++.+.++|+|||.+++=.
T Consensus 139 ~iFiDa----------~k~~y~~~~e~~~~ll~~gGiii~DN 170 (227)
T d1susa1 139 FIFVDA----------DKDNYLNYHKRLIDLVKVGGVIGYDN 170 (227)
T ss_dssp EEEECS----------CSTTHHHHHHHHHHHBCTTCCEEEET
T ss_pred EEEecc----------chhhhHHHHHHHHhhcCCCcEEEEcc
Confidence 999863 22456788888999999999998743
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=98.79 E-value=3.1e-10 Score=89.62 Aligned_cols=91 Identities=11% Similarity=0.260 Sum_probs=73.3
Q ss_pred cchhhHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCC
Q 025475 35 RYSALRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED 113 (252)
Q Consensus 35 ~~~~l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~ 113 (252)
....+.+++... +.++.+|||+|||+|.++..+++.+. +++++|+++.+++.+++++...++++++++|+.+++ ++.
T Consensus 14 d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~~~-~v~aIE~D~~l~~~l~~~~~~~~n~~ii~~D~l~~~-~~~ 91 (245)
T d1yuba_ 14 SEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKISK-QVTSIELDSHLFNLSSEKLKLNTRVTLIHQDILQFQ-FPN 91 (245)
T ss_dssp CTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHSS-EEEESSSSCSSSSSSSCTTTTCSEEEECCSCCTTTT-CCC
T ss_pred CHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhhcC-ceeEeeecccchhhhhhhhhhccchhhhhhhhhccc-ccc
Confidence 333444444443 35677999999999999999999864 999999999999998888876678999999999987 777
Q ss_pred CCeeEEEeccchhh
Q 025475 114 ESFDAVIDKGTLDS 127 (252)
Q Consensus 114 ~~~D~v~~~~~l~~ 127 (252)
...+.|+++.+++-
T Consensus 92 ~~~~~vv~NLPY~I 105 (245)
T d1yuba_ 92 KQRYKIVGNIPYHL 105 (245)
T ss_dssp SSEEEEEEECCSSS
T ss_pred ceeeeEeeeeehhh
Confidence 77888888877643
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.78 E-value=1.2e-08 Score=83.98 Aligned_cols=110 Identities=15% Similarity=0.219 Sum_probs=78.8
Q ss_pred CCCcEEEEcccCcHhHHHHHHc----C--CCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCCCCCCeeEEEe
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD----G--YEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFFEDESFDAVID 121 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~----~--~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~~~~~~D~v~~ 121 (252)
++.+|||.|||+|.++..+..+ . ...++|+|+++.+++.|+.+... .....+.+.|..... ...+||+|++
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~~~~~~~d~~~~~--~~~~fD~vi~ 194 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQKMTLLHQDGLANL--LVDPVDVVIS 194 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCCCEEEESCTTSCC--CCCCEEEEEE
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhhhhhhcccccccc--cccccccccc
Confidence 4558999999999999888653 1 33799999999999999887642 235677777765543 5568999999
Q ss_pred ccchhhhcC-----------CCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 122 KGTLDSLMC-----------GTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 122 ~~~l~~~~~-----------~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+.++..... ..........++..+.+.|++||+++++.+
T Consensus 195 NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~~I~p 244 (328)
T d2f8la1 195 DLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRYTKPGGYLFFLVP 244 (328)
T ss_dssp ECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred CCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHhcCCCCceEEEec
Confidence 998643200 000111234478999999999999877764
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=98.67 E-value=1.1e-07 Score=71.19 Aligned_cols=115 Identities=17% Similarity=0.268 Sum_probs=87.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC----CCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----FEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~----~~~~~~D~v~~~ 122 (252)
..++..++|..+|.|..+..+++.+ ++|+|+|.++.+++.++... .+++.+++.+..++.. ...+.+|.|++.
T Consensus 16 ~~~g~~~vD~T~G~GGhs~~iL~~~-~~viaiD~D~~ai~~a~~~~--~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~D 92 (182)
T d1wg8a2 16 VRPGGVYVDATLGGAGHARGILERG-GRVIGLDQDPEAVARAKGLH--LPGLTVVQGNFRHLKRHLAALGVERVDGILAD 92 (182)
T ss_dssp CCTTCEEEETTCTTSHHHHHHHHTT-CEEEEEESCHHHHHHHHHTC--CTTEEEEESCGGGHHHHHHHTTCSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCcHHHHHHhccc-CcEEEEhhhhhHHHHHhhcc--ccceeEeehHHHHHHHHHHHcCCCccCEEEEE
Confidence 4577899999999999999999984 59999999999999998764 3578999988877542 345679999987
Q ss_pred cchhhh--cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 123 GTLDSL--MCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 123 ~~l~~~--~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
..+... -...+........|.....+|++||.+++.++....
T Consensus 93 LGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~ii~fhs~E 136 (182)
T d1wg8a2 93 LGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVVIAFHSLE 136 (182)
T ss_dssp CSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEEEECSHHH
T ss_pred ccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEEEecccch
Confidence 543322 000112234566788899999999999999986544
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=98.66 E-value=2.3e-07 Score=70.78 Aligned_cols=98 Identities=17% Similarity=0.246 Sum_probs=79.3
Q ss_pred CCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCCCCCCCeeEEEeccchh
Q 025475 50 SSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLD 126 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~ 126 (252)
+.+|+|+|+|.|.-+..++-.. ..+++.+|.+..-+...+..... ..++++++..+++.. ...+||+|++..+
T Consensus 66 ~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~--~~~~fD~V~sRA~-- 141 (207)
T d1jsxa_ 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFP--SEPPFDGVISRAF-- 141 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSC--CCSCEEEEECSCS--
T ss_pred CCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhc--cccccceehhhhh--
Confidence 4589999999999998888653 56999999999877777776543 348999999999875 4568999998543
Q ss_pred hhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 127 SLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 127 ~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.....+++-+..+++++|.+++.--
T Consensus 142 ---------~~~~~ll~~~~~~l~~~g~~~~~KG 166 (207)
T d1jsxa_ 142 ---------ASLNDMVSWCHHLPGEQGRFYALKG 166 (207)
T ss_dssp ---------SSHHHHHHHHTTSEEEEEEEEEEES
T ss_pred ---------cCHHHHHHHHHHhcCCCcEEEEECC
Confidence 5567788889999999999888653
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.62 E-value=3.8e-08 Score=76.05 Aligned_cols=115 Identities=20% Similarity=0.305 Sum_probs=79.0
Q ss_pred hhhHHHHHhhC--CCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCC
Q 025475 37 SALRPFVRKYI--PTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFE 112 (252)
Q Consensus 37 ~~l~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~ 112 (252)
..+.+++...+ +++.+|||.|||+|.++..+.+. . ...++|+|+++.++..++ ...+.++|..... .
T Consensus 5 ~~i~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~-------~~~~~~~~~~~~~--~ 75 (223)
T d2ih2a1 5 PEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP-------WAEGILADFLLWE--P 75 (223)
T ss_dssp HHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT-------TEEEEESCGGGCC--C
T ss_pred HHHHHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc-------cceeeeeehhccc--c
Confidence 34566665553 45669999999999998888765 2 457999999987543322 3467778877664 4
Q ss_pred CCCeeEEEeccchhhhcCCC----------------------CChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 113 DESFDAVIDKGTLDSLMCGT----------------------NAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~----------------------~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
...||+|+++..+....... ........++..+.+.|++||++.++.+
T Consensus 76 ~~~fd~ii~npP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~~~~I~p 145 (223)
T d2ih2a1 76 GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVP 145 (223)
T ss_dssp SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred ccccceecccCccccccccccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCceEEEEe
Confidence 56899999998864321100 0001134567888999999999888764
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.58 E-value=1.9e-07 Score=76.05 Aligned_cols=114 Identities=11% Similarity=0.093 Sum_probs=84.2
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCCCCCCeeEEEec
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFFEDESFDAVIDK 122 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~~~~~~D~v~~~ 122 (252)
..++.+|||++||.|.-+..++.. ..+.++++|.++.-++.++.++... .++.+...|....+ .....||.|++.
T Consensus 114 ~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~-~~~~~fD~ILvD 192 (313)
T d1ixka_ 114 PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIG-ELNVEFDKILLD 192 (313)
T ss_dssp CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGG-GGCCCEEEEEEE
T ss_pred CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhccccccccccccc-cccccccEEEEc
Confidence 457889999999999988888765 2457999999999998888877543 36677777777665 456789999997
Q ss_pred cchhhhcCCCC--------Chh-------hHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 123 GTLDSLMCGTN--------API-------SASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 123 ~~l~~~~~~~~--------~~~-------~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.........-. ..+ ...+++..+...|||||+++.++++
T Consensus 193 aPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lk~gG~lVYsTCS 246 (313)
T d1ixka_ 193 APCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCS 246 (313)
T ss_dssp CCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEESC
T ss_pred cccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhheeCCCcEEEEeecc
Confidence 65443321111 111 1366788889999999999998876
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.58 E-value=1.2e-07 Score=76.28 Aligned_cols=115 Identities=12% Similarity=0.134 Sum_probs=80.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCC--CCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIP--QLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~--~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
..++.+|||+++|.|.-+..+++.+ ...++++|+++.-++..+.+++..+ ++.....|.........+.||.|++..
T Consensus 100 ~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~~~~~~~~~~~~~~~~fd~IL~Da 179 (284)
T d1sqga2 100 PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFDRILLDA 179 (284)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHTTCCCEEEECCTTCTHHHHTTCCEEEEEEEC
T ss_pred ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhhcccccceeeeccccccchhcccccccEEEEec
Confidence 4577899999999999999998874 4689999999998888888876543 333333333222112346799999976
Q ss_pred chhhhcCCCCChh---------------hHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 124 TLDSLMCGTNAPI---------------SASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 124 ~l~~~~~~~~~~~---------------~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
...-...--.+++ -..++|+.+.++|++||+|+.++++
T Consensus 180 PCSg~G~~rr~p~~~~~~~~~~~~~l~~lQ~~iL~~a~~~lk~gG~lvYsTCS 232 (284)
T d1sqga2 180 PCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCS 232 (284)
T ss_dssp CCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGEEEEEEEEEEESC
T ss_pred cccccCccccccchhhccccchhhHHHHHHHHHHHHHHHhcCCCceEEEeeec
Confidence 5443321111111 1367788899999999999998876
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=98.55 E-value=7e-07 Score=66.65 Aligned_cols=107 Identities=21% Similarity=0.301 Sum_probs=76.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc-C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-------CCCCCee
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD-G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-------FEDESFD 117 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~-~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-------~~~~~~D 117 (252)
++++.+|||+||++|.++..+.+. + ...++++|+.+- ...+++.++++|+.+... ....++|
T Consensus 20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~---------~~i~~~~~~~~d~~~~~~~~~~~~~~~~~~~D 90 (180)
T d1ej0a_ 20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM---------DPIVGVDFLQGDFRDELVMKALLERVGDSKVQ 90 (180)
T ss_dssp CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC---------CCCTTEEEEESCTTSHHHHHHHHHHHTTCCEE
T ss_pred cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc---------cccCCceEeecccccchhhhhhhhhccCccee
Confidence 578889999999999999998876 3 568999998651 223578899999876321 2456899
Q ss_pred EEEeccchhhhcCCCC------ChhhHHHHHHHHHHcccCCcEEEEEEcCChh
Q 025475 118 AVIDKGTLDSLMCGTN------APISASQMLGEVSRLLKPGGIYMLITYGDPK 164 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~------~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~ 164 (252)
+|++....... +.. ..+-....+.-+.++|++||.+++-.+....
T Consensus 91 lVlSD~ap~~s--g~~~~d~~~~~~L~~~~l~~a~~~Lk~gG~fV~K~F~g~~ 141 (180)
T d1ej0a_ 91 VVMSDMAPNMS--GTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVFQGEG 141 (180)
T ss_dssp EEEECCCCCCC--SCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEESSTT
T ss_pred EEEecccchhc--ccchhHHHHHHHHHHHHHHhhhhccCCCCcEEEEEecCcc
Confidence 99998764321 110 1112245566678999999999999887544
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=98.52 E-value=3.3e-07 Score=76.03 Aligned_cols=117 Identities=12% Similarity=0.238 Sum_probs=82.0
Q ss_pred HHHHHhhC--CCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCCeEEEccccCCCC---CC
Q 025475 40 RPFVRKYI--PTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSF---FE 112 (252)
Q Consensus 40 ~~~~~~~~--~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~--~~~~v~~~~~d~~~~~~---~~ 112 (252)
.+.+.+.+ .++.+|||+-||+|.++..+++.+ .+|+|+|.++.+++.|+++.+ +..+++++.++..+... ..
T Consensus 201 ~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~~~-~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~~~ 279 (358)
T d1uwva2 201 VARALEWLDVQPEDRVLDLFCGMGNFTLPLATQA-ASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWA 279 (358)
T ss_dssp HHHHHHHHTCCTTCEEEEESCTTTTTHHHHHTTS-SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSGGG
T ss_pred HHHHHHhhccCCCceEEEecccccccchhccccc-cEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhhhh
Confidence 33444443 356799999999999999999874 599999999999999999875 34589999999876431 22
Q ss_pred CCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 113 DESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 113 ~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
...+|+|+.+.+ .....+.+..+.+. +|.-++||+. .|....+.+
T Consensus 280 ~~~~d~vilDPP----------R~G~~~~~~~l~~~-~~~~ivYVSC--np~TlaRDl 324 (358)
T d1uwva2 280 KNGFDKVLLDPA----------RAGAAGVMQQIIKL-EPIRIVYVSC--NPATLARDS 324 (358)
T ss_dssp TTCCSEEEECCC----------TTCCHHHHHHHHHH-CCSEEEEEES--CHHHHHHHH
T ss_pred hccCceEEeCCC----------CccHHHHHHHHHHc-CCCEEEEEeC--CHHHHHHHH
Confidence 467899998654 22233455655553 5655666643 465555555
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=2.8e-06 Score=68.29 Aligned_cols=114 Identities=10% Similarity=0.031 Sum_probs=78.7
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHc--CCCcEEEEeCCHHHHHHHHHhhcCC--CCCeEEEccccCCCCC--CCCCeeEEE
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKD--GYEDIVNIDISSVAIDMMKMKYEEI--PQLKYLQMDVRDMSFF--EDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~--~~~~v~~vD~s~~~i~~a~~~~~~~--~~v~~~~~d~~~~~~~--~~~~~D~v~ 120 (252)
..++.+|||++||.|.-+..++.. +...++++|+++.-++.++++++.. .++.+...|....... ..+.||.|+
T Consensus 92 ~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~~~~~~~~fD~VL 171 (293)
T d2b9ea1 92 PPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171 (293)
T ss_dssp CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCTTCGGGTTEEEEE
T ss_pred CCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcccccccceeeEEe
Confidence 457789999999999988888765 3558999999999999999888654 4788888888776421 125799999
Q ss_pred eccchhhhcCCC----------CChh-------hHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 121 DKGTLDSLMCGT----------NAPI-------SASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 121 ~~~~l~~~~~~~----------~~~~-------~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+........... .... ....++..+. .+++||.|+-++++
T Consensus 172 ~DaPCSg~G~~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~-~l~~gG~lvYsTCS 228 (293)
T d2b9ea1 172 LDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL-TFPSLQRLVYSTCS 228 (293)
T ss_dssp ECCCCCC------------------CCHHHHHHHHHHHHHHHT-TCTTCCEEEEEESC
T ss_pred ecCcccchhhhcccchhhccCCcchhhHHHHhhhhHHhHHHhh-hcccccEEEEeecc
Confidence 986533221100 0110 1133445555 47899998888876
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.40 E-value=3.4e-06 Score=67.07 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=64.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
+.++..|||+|+|.|.++..+++.+. +++++|+++.+++..++.+... .+++++.+|+.+.. ++ ..+.||.+.
T Consensus 19 ~~~~d~VlEIGPG~G~LT~~Ll~~~~-~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~-~~--~~~~vV~NL 94 (278)
T d1zq9a1 19 LRPTDVVLEVGPGTGNMTVKLLEKAK-KVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD-LP--FFDTCVANL 94 (278)
T ss_dssp CCTTCEEEEECCTTSTTHHHHHHHSS-EEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC-CC--CCSEEEEEC
T ss_pred CCCCCEEEEECCCchHHHHHHHhcCC-cEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh-hh--hhhhhhcch
Confidence 34677999999999999999999964 9999999999999999987543 47899999998875 43 356888887
Q ss_pred chhhh
Q 025475 124 TLDSL 128 (252)
Q Consensus 124 ~l~~~ 128 (252)
+++-.
T Consensus 95 PY~Is 99 (278)
T d1zq9a1 95 PYQIS 99 (278)
T ss_dssp CGGGH
T ss_pred HHHHH
Confidence 76533
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=98.38 E-value=2.7e-07 Score=72.68 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=63.3
Q ss_pred CCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCC-----CCeeEEEe
Q 025475 47 IPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFED-----ESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~-----~~~D~v~~ 121 (252)
..++..|||+|||.|.++..+++.+ .+++++|+++.+++..++.....++++++.+|+.+++ +.. +.--.|+.
T Consensus 19 ~~~~d~vlEIGpG~G~LT~~Ll~~~-~~v~aiEiD~~l~~~L~~~~~~~~~~~ii~~D~l~~~-~~~~~~~~~~~~~vvg 96 (252)
T d1qyra_ 19 PQKGQAMVEIGPGLAALTEPVGERL-DQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTFN-FGELAEKMGQPLRVFG 96 (252)
T ss_dssp CCTTCCEEEECCTTTTTHHHHHTTC-SCEEEECCCHHHHHHHHTCTTTGGGEEEECSCGGGCC-HHHHHHHHTSCEEEEE
T ss_pred CCCCCEEEEECCCchHHHHHHHccC-CceEEEEeccchhHHHHHHhhhccchhHHhhhhhhhc-ccccccccCCCeEEEe
Confidence 3467799999999999999999986 4899999999999999987765568999999998875 221 22236677
Q ss_pred ccchhhh
Q 025475 122 KGTLDSL 128 (252)
Q Consensus 122 ~~~l~~~ 128 (252)
+.+++-.
T Consensus 97 NlPY~Is 103 (252)
T d1qyra_ 97 NLPYNIS 103 (252)
T ss_dssp ECCTTTH
T ss_pred cchHHHH
Confidence 7665544
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=98.27 E-value=5.7e-06 Score=70.02 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=89.1
Q ss_pred eccchhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHcC--------------CCcEEEEeCCHHHHHHHHHhhc--C
Q 025475 33 YQRYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKDG--------------YEDIVNIDISSVAIDMMKMKYE--E 94 (252)
Q Consensus 33 ~~~~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~~--------------~~~v~~vD~s~~~i~~a~~~~~--~ 94 (252)
+.....+.+++...+. ++.+|+|.+||+|.+...+.+.- ...++|+|+++.+...|+.+.. .
T Consensus 144 f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g 223 (425)
T d2okca1 144 YFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHG 223 (425)
T ss_dssp GCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTT
T ss_pred hccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcC
Confidence 4445667777766654 45699999999999998876641 1259999999999999987752 2
Q ss_pred --CCCCeEEEccccCCCCCCCCCeeEEEeccchhhhcCC----------CCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 95 --IPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMCG----------TNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 95 --~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~~----------~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.....+...|..+.. ....||+|+++.++...... .+....-..++..+...|++||.+.++.+
T Consensus 224 ~~~~~~~i~~~d~l~~~--~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 224 IGTDRSPIVCEDSLEKE--PSTLVDVILANPPFGTRPAGSVDINRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CCSSCCSEEECCTTTSC--CSSCEEEEEECCCSSCCCTTCCCCCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred CccccceeecCchhhhh--cccccceEEecCCCCCCccccchhhhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 124567778776653 56689999999987432110 01112235689999999999998887764
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=98.18 E-value=1.4e-06 Score=67.63 Aligned_cols=99 Identities=12% Similarity=0.178 Sum_probs=65.8
Q ss_pred CCcEEEEcccCcHhHHHHHHc----C-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEe
Q 025475 50 SSRVLMVGCGNALMSEDMVKD----G-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVID 121 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~----~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~ 121 (252)
+.+|||+|++.|..+..++.. + .++++++|+++....... ....+++++++|..+... +....+|.|+.
T Consensus 81 Pk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~---~~~~~I~~i~gDs~~~~~~~~l~~~~~dlIfI 157 (232)
T d2bm8a1 81 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA---SDMENITLHQGDCSDLTTFEHLREMAHPLIFI 157 (232)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG---GGCTTEEEEECCSSCSGGGGGGSSSCSSEEEE
T ss_pred CCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh---ccccceeeeecccccHHHHHHHHhcCCCEEEE
Confidence 558999999999877766532 3 569999999864322211 123579999999876431 34556888887
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
... |+- ...... + .+..+|++||++++-+.
T Consensus 158 D~~-H~~------~~v~~~-~-~~~~lLk~GG~iIveD~ 187 (232)
T d2bm8a1 158 DNA-HAN------TFNIMK-W-AVDHLLEEGDYFIIEDM 187 (232)
T ss_dssp ESS-CSS------HHHHHH-H-HHHHTCCTTCEEEECSC
T ss_pred cCC-cch------HHHHHH-H-HHhcccCcCCEEEEEcC
Confidence 655 322 123332 3 35689999999988663
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=98.14 E-value=3.4e-06 Score=65.48 Aligned_cols=101 Identities=15% Similarity=0.160 Sum_probs=77.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcC--CCCCeEEEccccCCCC--CCCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEE--IPQLKYLQMDVRDMSF--FEDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~--~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~ 123 (252)
...+++|+|+|.|.-+..++-. ...+++.+|-+..-+...+..... ..++.++...+++... ...++||+|++-.
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~sRA 149 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRKDVRESYDIVTARA 149 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCTTTTTCEEEEEEEC
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccccccccceEEEEhh
Confidence 4568999999999988888764 456999999998777666665432 4578888888876541 1235799999864
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+ .....++.-+...+++||.+++.--
T Consensus 150 v-----------a~l~~ll~~~~~~l~~~g~~i~~KG 175 (239)
T d1xdza_ 150 V-----------ARLSVLSELCLPLVKKNGLFVALKA 175 (239)
T ss_dssp C-----------SCHHHHHHHHGGGEEEEEEEEEEEC
T ss_pred h-----------hCHHHHHHHHhhhcccCCEEEEECC
Confidence 3 5677889999999999999887553
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.11 E-value=2.5e-06 Score=70.85 Aligned_cols=101 Identities=17% Similarity=0.046 Sum_probs=73.7
Q ss_pred CCCcEEEEcccCcHhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCC-----------------CCCeEEEccccCCCC
Q 025475 49 TSSRVLMVGCGNALMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEI-----------------PQLKYLQMDVRDMSF 110 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~-~~~~~v~~vD~s~~~i~~a~~~~~~~-----------------~~v~~~~~d~~~~~~ 110 (252)
++.+|||..||+|..++..+. .+..+|+++|+|+.+++.++++++.+ ..+.+.+.|+.....
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~~ 124 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLMA 124 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHHH
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhhH
Confidence 567999999999999996554 56668999999999999999987421 123445555443321
Q ss_pred CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 111 FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 111 ~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.....||+|.+.. + ..+..+++.+.+.++.||.|.++..
T Consensus 125 ~~~~~fDvIDiDP------f-----Gs~~pfldsAi~a~~~~Gll~vTaT 163 (375)
T d2dula1 125 ERHRYFHFIDLDP------F-----GSPMEFLDTALRSAKRRGILGVTAT 163 (375)
T ss_dssp HSTTCEEEEEECC------S-----SCCHHHHHHHHHHEEEEEEEEEEEC
T ss_pred hhcCcCCcccCCC------C-----CCcHHHHHHHHHHhccCCEEEEEec
Confidence 2345799999864 1 3345688888899999999999763
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.89 E-value=3.3e-05 Score=66.92 Aligned_cols=126 Identities=10% Similarity=-0.024 Sum_probs=81.1
Q ss_pred cchhhHHHHHhhCC--CCCcEEEEcccCcHhHHHHHHc----C---------------CCcEEEEeCCHHHHHHHHHhhc
Q 025475 35 RYSALRPFVRKYIP--TSSRVLMVGCGNALMSEDMVKD----G---------------YEDIVNIDISSVAIDMMKMKYE 93 (252)
Q Consensus 35 ~~~~l~~~~~~~~~--~~~~vLD~G~G~G~~~~~l~~~----~---------------~~~v~~vD~s~~~i~~a~~~~~ 93 (252)
....+.+++...+. ++.+|+|.+||+|.+...+.+. . ...++|+|+++.+...|+.++.
T Consensus 148 TP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~nl~ 227 (524)
T d2ar0a1 148 TPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 227 (524)
T ss_dssp CCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred cccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHHHHH
Confidence 44556677666643 4559999999999998876553 1 1258999999999999987652
Q ss_pred C--CC-----CCeEEEccccCCCCCCCCCeeEEEeccchhhhcC-------CCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 94 E--IP-----QLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLMC-------GTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 94 ~--~~-----~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~~-------~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
- .. .-.+...+....+.....+||+|++++++.--.. ..+....-..++..+.+.|++||++.++.
T Consensus 228 l~~~~~~i~~~~~~~~~~~l~~d~~~~~kfD~Ii~NPPfg~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~gGr~aiIl 307 (524)
T d2ar0a1 228 LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATNPPFGSAAGTNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVV 307 (524)
T ss_dssp TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEECCCCTTCSSCCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred hhcccccccccchhhhhhhhhhcccccccceeEEecCCccccccccchhhhccccccccHHHHHHHHHhccccCcEEEEE
Confidence 1 11 1123333333221123457999999998642200 00111223458999999999999988876
Q ss_pred c
Q 025475 160 Y 160 (252)
Q Consensus 160 ~ 160 (252)
+
T Consensus 308 P 308 (524)
T d2ar0a1 308 P 308 (524)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=97.62 E-value=5.3e-05 Score=58.82 Aligned_cols=76 Identities=8% Similarity=-0.012 Sum_probs=58.6
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-----------CCCCeEEEccccCCCCCCCCCeeEE
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-----------IPQLKYLQMDVRDMSFFEDESFDAV 119 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-----------~~~v~~~~~d~~~~~~~~~~~~D~v 119 (252)
.+|||.-||.|..+..++..|. +|+++|.++.+....+..+.. ..+++++++|..++..-..++||+|
T Consensus 90 ~~VlD~TaGlG~Da~vlA~~G~-~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~DvI 168 (250)
T d2oyra1 90 PDVVDATAGLGRDAFVLASVGC-RVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVV 168 (250)
T ss_dssp CCEEETTCTTCHHHHHHHHHTC-CEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSEE
T ss_pred CEEEECCCcccHHHHHHHhCCC-EEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCCCEE
Confidence 4899999999999999999985 899999999876665544321 1268999999877542335679999
Q ss_pred Eeccchhh
Q 025475 120 IDKGTLDS 127 (252)
Q Consensus 120 ~~~~~l~~ 127 (252)
+....+.+
T Consensus 169 YlDPMFp~ 176 (250)
T d2oyra1 169 YLDPMFPH 176 (250)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99886543
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=97.44 E-value=0.00039 Score=50.92 Aligned_cols=99 Identities=25% Similarity=0.354 Sum_probs=67.4
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----C-CCCCCeeE
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----F-FEDESFDA 118 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~-~~~~~~D~ 118 (252)
.++++.+||-+|||. |..+..+++. |..+|+++|.+++-++.+++.-. ..++.-.-.+.. . .....+|+
T Consensus 24 ~~~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa----~~~i~~~~~~~~~~v~~~t~g~G~D~ 99 (174)
T d1jqba2 24 DIEMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGA----TDILNYKNGHIEDQVMKLTNGKGVDR 99 (174)
T ss_dssp TCCTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTC----SEEECGGGSCHHHHHHHHTTTSCEEE
T ss_pred CCCCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCc----cccccccchhHHHHHHHHhhccCcce
Confidence 467888999999985 8888888887 55689999999998888887532 233322211111 0 12345999
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+..-.- ...++.+.++++|+|.+++....
T Consensus 100 vid~~g~-------------~~~~~~a~~~~~~~G~iv~~G~~ 129 (174)
T d1jqba2 100 VIMAGGG-------------SETLSQAVKMVKPGGIISNINYH 129 (174)
T ss_dssp EEECSSC-------------TTHHHHHHHHEEEEEEEEECCCC
T ss_pred EEEccCC-------------HHHHHHHHHHHhcCCEEEEEeec
Confidence 9864221 23467778999999999886643
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=97.40 E-value=0.00019 Score=55.18 Aligned_cols=115 Identities=15% Similarity=0.164 Sum_probs=66.5
Q ss_pred hHHHHHhh-CCCCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhh-cCCC-C-CeEEEccccCCCCCCC
Q 025475 39 LRPFVRKY-IPTSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKY-EEIP-Q-LKYLQMDVRDMSFFED 113 (252)
Q Consensus 39 l~~~~~~~-~~~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~-~~~~-~-v~~~~~d~~~~~~~~~ 113 (252)
+..+..+. +.+..+|+|+|||.|.++..++.+. ...+.|+++.-...+ .... .... + +++...+ +....+.
T Consensus 55 l~~~~~~~~~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG~d~~e--~P~~~~~~~~ni~~~~~~~--dv~~l~~ 130 (257)
T d2p41a1 55 LRWFVERNLVTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKGGPGHE--EPIPMSTYGWNLVRLQSGV--DVFFIPP 130 (257)
T ss_dssp HHHHHHTTSSCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCCSTTSC--CCCCCCSTTGGGEEEECSC--CTTTSCC
T ss_pred HHHHHHhcCccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEecCcccc--CCccccccccccccchhhh--hHHhcCC
Confidence 33444443 5677799999999999999999874 346778777422000 0000 0000 1 1222221 1111456
Q ss_pred CCeeEEEeccchhhhcCCCCChh----hHHHHHHHHHHcccCCcEEEEEEcCC
Q 025475 114 ESFDAVIDKGTLDSLMCGTNAPI----SASQMLGEVSRLLKPGGIYMLITYGD 162 (252)
Q Consensus 114 ~~~D~v~~~~~l~~~~~~~~~~~----~~~~~l~~~~~~L~~gG~l~i~~~~~ 162 (252)
..+|+|+|...-. .+++. ....+++-+.+.|+|||.+++-.+..
T Consensus 131 ~~~D~vlcDm~es-----s~~~~vd~~Rtl~vLela~~wLk~gg~FvvKVl~p 178 (257)
T d2p41a1 131 ERCDTLLCDIGES-----SPNPTVEAGRTLRVLNLVENWLSNNTQFCVKVLNP 178 (257)
T ss_dssp CCCSEEEECCCCC-----CSSHHHHHHHHHHHHHHHHHHCCTTCEEEEEESCC
T ss_pred CcCCEEEeeCCCC-----CCCchhhhhhHHHHHHHHHHHcccCCEEEEEECCC
Confidence 7899999985311 11111 12355677779999999999887663
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.31 E-value=0.00018 Score=58.16 Aligned_cols=59 Identities=19% Similarity=0.162 Sum_probs=50.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM 108 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~ 108 (252)
.+..|||+|+|.|.++..+++.+ ..+++++|+++...+..++.+.+ ++++++.+|+..+
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~~~-~~~~ii~~D~l~~ 102 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKFEG-SPLQILKRDPYDW 102 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHTTT-SSCEEECSCTTCH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhccC-CCcEEEeCchhhc
Confidence 45589999999999999999874 45899999999999999988764 5799999998653
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=97.22 E-value=0.00078 Score=49.49 Aligned_cols=98 Identities=19% Similarity=0.214 Sum_probs=64.6
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCC-------CC-CCCCCe
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDM-------SF-FEDESF 116 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~-------~~-~~~~~~ 116 (252)
++++.+||-+|+|. |..+..+++. |..+|+++|.++.-++.+++.-. ..++...-.+. .+ .....+
T Consensus 26 ~~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa----~~vi~~~~~~~~~~~~~i~~~~~~~g~ 101 (182)
T d1vj0a2 26 SFAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA----DLTLNRRETSVEERRKAIMDITHGRGA 101 (182)
T ss_dssp CCBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHHHHTTTSCE
T ss_pred CCCCCEEEEECCCccchhheecccccccccccccccccccccccccccc----eEEEeccccchHHHHHHHHHhhCCCCc
Confidence 56788999999984 7788888776 55589999999999999987532 12221111110 00 123459
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+|+..-. -...++.+.++|++||.+++....
T Consensus 102 Dvvid~vG-------------~~~~~~~a~~~l~~~G~iv~~G~~ 133 (182)
T d1vj0a2 102 DFILEATG-------------DSRALLEGSELLRRGGFYSVAGVA 133 (182)
T ss_dssp EEEEECSS-------------CTTHHHHHHHHEEEEEEEEECCCC
T ss_pred eEEeecCC-------------chhHHHHHHHHhcCCCEEEEEeec
Confidence 99985321 123467778999999999876543
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=97.21 E-value=0.0021 Score=46.37 Aligned_cols=99 Identities=19% Similarity=0.161 Sum_probs=66.2
Q ss_pred hCCCCCcEEEEccc-CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC---------CCCCCC
Q 025475 46 YIPTSSRVLMVGCG-NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---------FFEDES 115 (252)
Q Consensus 46 ~~~~~~~vLD~G~G-~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~---------~~~~~~ 115 (252)
.++++.+||-+||| .|.++..+++....+++++|.++.-++.+++.-.. ..+..+..... ......
T Consensus 23 ~~~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~----~~~~~~~~~~~~~~~~~~~~~~~g~g 98 (170)
T d1e3ja2 23 GVQLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGAD----VTLVVDPAKEEESSIIERIRSAIGDL 98 (170)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCS----EEEECCTTTSCHHHHHHHHHHHSSSC
T ss_pred CCCCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCCc----EEEeccccccccchhhhhhhcccccC
Confidence 46788899999998 47777777776334899999999999999876422 22222211111 011346
Q ss_pred eeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 116 FDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 116 ~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+|+|+..- .-...++.+.++|+++|.+++....
T Consensus 99 ~D~vid~~-------------g~~~~~~~a~~~~~~~G~iv~~G~~ 131 (170)
T d1e3ja2 99 PNVTIDCS-------------GNEKCITIGINITRTGGTLMLVGMG 131 (170)
T ss_dssp CSEEEECS-------------CCHHHHHHHHHHSCTTCEEEECSCC
T ss_pred CceeeecC-------------CChHHHHHHHHHHhcCCceEEEecC
Confidence 89998532 1234577788999999999886543
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=97.19 E-value=0.00086 Score=48.92 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=65.5
Q ss_pred CCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----CCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~~D~v~ 120 (252)
++++.+||-+|||. |..+..+++. |...++++|.++.-++.+++.- ..+++..+-.+.. ...++.+|+|+
T Consensus 26 ~~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~G----a~~~i~~~~~~~~~~i~~~t~gg~D~vi 101 (174)
T d1f8fa2 26 VTPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLG----ATHVINSKTQDPVAAIKEITDGGVNFAL 101 (174)
T ss_dssp CCTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHT----CSEEEETTTSCHHHHHHHHTTSCEEEEE
T ss_pred CCCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcC----CeEEEeCCCcCHHHHHHHHcCCCCcEEE
Confidence 67888999999984 5666666655 6768899999999889888752 2234332222211 12345799999
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..- .-...++.+.++++++|.+++..
T Consensus 102 d~~-------------G~~~~~~~~~~~~~~~G~i~~~G 127 (174)
T d1f8fa2 102 EST-------------GSPEILKQGVDALGILGKIAVVG 127 (174)
T ss_dssp ECS-------------CCHHHHHHHHHTEEEEEEEEECC
T ss_pred EcC-------------CcHHHHHHHHhcccCceEEEEEe
Confidence 532 22346778889999999998764
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.06 E-value=0.0022 Score=46.40 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=66.5
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-------CCCCCe
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-------FEDESF 116 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-------~~~~~~ 116 (252)
.+.++.+|+-+|||. |..+..+++. |..+|+++|.++.-++.+++.-.+ .++..+-.+... .....+
T Consensus 23 ~~~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~----~~~~~~~~~~~~~~~~~~~~~g~g~ 98 (171)
T d1pl8a2 23 GVTLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGAD----LVLQISKESPQEIARKVEGQLGCKP 98 (171)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCS----EEEECSSCCHHHHHHHHHHHHTSCC
T ss_pred CCCCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCc----ccccccccccccccccccccCCCCc
Confidence 467788999999985 6666666665 666899999999999998875221 222222111110 012468
Q ss_pred eEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 117 DAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 117 D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
|+|+..-. -...++...+++++||++++....
T Consensus 99 Dvvid~~G-------------~~~~~~~a~~~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 99 EVTIECTG-------------AEASIQAGIYATRSGGTLVLVGLG 130 (171)
T ss_dssp SEEEECSC-------------CHHHHHHHHHHSCTTCEEEECSCC
T ss_pred eEEEeccC-------------CchhHHHHHHHhcCCCEEEEEecC
Confidence 99886321 134678888999999999886654
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=97.00 E-value=0.001 Score=49.61 Aligned_cols=110 Identities=12% Similarity=0.080 Sum_probs=70.0
Q ss_pred hhCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------C-CCCCC
Q 025475 45 KYIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------F-FEDES 115 (252)
Q Consensus 45 ~~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~-~~~~~ 115 (252)
..++++.+||.+|||. |..+..+++. |..+|+++|.++.-++.+++.-. ..++ +..+.+ + .....
T Consensus 21 a~v~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga----~~~~--~~~~~~~~~~i~~~t~g~g 94 (195)
T d1kola2 21 AGVGPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGF----EIAD--LSLDTPLHEQIAALLGEPE 94 (195)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTC----EEEE--TTSSSCHHHHHHHHHSSSC
T ss_pred hCCCCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccc----cEEE--eCCCcCHHHHHHHHhCCCC
Confidence 3477899999999997 6677777654 66799999999999999887631 1111 111111 0 12346
Q ss_pred eeEEEeccchhhh--cCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 116 FDAVIDKGTLDSL--MCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 116 ~D~v~~~~~l~~~--~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+|+++..-..... .............++.+.++++|||.+.+...
T Consensus 95 ~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~ 141 (195)
T d1kola2 95 VDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGL 141 (195)
T ss_dssp EEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSC
T ss_pred cEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeee
Confidence 8999864321100 00000112345689999999999999988653
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=96.94 E-value=0.00093 Score=53.19 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=48.4
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
+..++....+++..|||.-||+|+.+..+.+.|. +++|+|++++.++.+++++..
T Consensus 240 ~~rlI~~~s~~gdiVlDpF~GSGTT~~AA~~lgR-~~Ig~El~~~y~~~a~~Rl~~ 294 (320)
T d1booa_ 240 PEFFIRMLTEPDDLVVDIFGGSNTTGLVAERESR-KWISFEMKPEYVAASAFRFLD 294 (320)
T ss_dssp HHHHHHHHCCTTCEEEETTCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHGGGSC
T ss_pred HHHhhhhcccCCCEEEecCCCCcHHHHHHHHcCC-cEEEEeCCHHHHHHHHHHHHh
Confidence 4556666678899999999999999999999875 999999999999999999854
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=96.86 E-value=0.0021 Score=51.16 Aligned_cols=74 Identities=15% Similarity=0.129 Sum_probs=60.1
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
++|+|+-||.|.+..-+.+.|+..+.++|+++.+.+..+.++. -.++.+|+.++....-...|+++...+...+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~~N~~----~~~~~~Di~~~~~~~~~~~dll~~g~PCq~f 74 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYESNHS----AKLIKGDISKISSDEFPKCDGIIGGPPCQSW 74 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHHHHCC----SEEEESCTTTSCGGGSCCCSEEEECCCCTTT
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHHHHCC----CCCccCChhhCCHhHcccccEEeeccccccc
Confidence 4799999999999999988887677799999999999888874 3678899988752223468999998877754
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=96.80 E-value=0.0025 Score=46.39 Aligned_cols=98 Identities=19% Similarity=0.135 Sum_probs=68.1
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------CCCCCCee
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~~D 117 (252)
.++++.+|+-+|||. |..+..+++. |...|+++|.++.-++.+++.-. ..++...-.+.. ....+.+|
T Consensus 25 ~v~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga----~~~i~~~~~~~~~~~~~~~~~~~G~d 100 (174)
T d1e3ia2 25 KVTPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGA----TDCLNPRELDKPVQDVITELTAGGVD 100 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----SEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCC----CcccCCccchhhhhhhHhhhhcCCCc
Confidence 367888999999986 8888888877 66689999999998888887632 233322211111 01235689
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
+|+.. ..-...+....+.+++| |.+++...
T Consensus 101 ~vie~-------------~G~~~~~~~a~~~~~~g~G~~v~vG~ 131 (174)
T d1e3ia2 101 YSLDC-------------AGTAQTLKAAVDCTVLGWGSCTVVGA 131 (174)
T ss_dssp EEEES-------------SCCHHHHHHHHHTBCTTTCEEEECCC
T ss_pred EEEEe-------------cccchHHHHHHHHhhcCCeEEEecCC
Confidence 99853 12344688889999996 99988654
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=96.70 E-value=0.002 Score=49.54 Aligned_cols=54 Identities=13% Similarity=0.143 Sum_probs=46.4
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 93 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~ 93 (252)
+..++...-.++..|||.-||+|+.+....+.|- +++|+|++++.++.|++++.
T Consensus 202 ~~~lI~~~s~~gd~VlDpF~GSGTT~~aa~~~~R-~~ig~El~~~y~~~a~~Rl~ 255 (256)
T d1g60a_ 202 IERIIRASSNPNDLVLDCFMGSGTTAIVAKKLGR-NFIGCDMNAEYVNQANFVLN 255 (256)
T ss_dssp HHHHHHHHCCTTCEEEESSCTTCHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCEEEECCCCchHHHHHHHHcCC-eEEEEeCCHHHHHHHHHHHc
Confidence 3445666667888999999999999999999874 99999999999999998864
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=96.50 E-value=0.0039 Score=49.80 Aligned_cols=75 Identities=13% Similarity=0.076 Sum_probs=59.3
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
.+.+|+|+-||.|.+...+.+.|..-+.++|+++.+++..+.++... .++|+.++....-..+|+++...++..+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~~N~~~~-----~~~Di~~~~~~~~~~~Dll~ggpPCq~f 84 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYEMNFGEK-----PEGDITQVNEKTIPDHDILCAGFPCQAF 84 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHHHHHSCC-----CBSCGGGSCGGGSCCCSEEEEECCCTTT
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHCCCC-----CcCchhcCchhhcceeeeeecccccchh
Confidence 45799999999999999999989766788999999999999998532 2578877652223468999998876654
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.48 E-value=0.0053 Score=43.96 Aligned_cols=96 Identities=11% Similarity=0.142 Sum_probs=61.6
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC----CCCCCeeEEE
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF----FEDESFDAVI 120 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~----~~~~~~D~v~ 120 (252)
.++++.+|+-+|+|. |..+..+++....+++++|.++.-++.+++.-. ..++..+-.+..+ ...+..+.|+
T Consensus 24 ~~~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga----~~~i~~~~~~~~~~~~~~~~g~~~~i~ 99 (166)
T d1llua2 24 NARPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA----SLTVNARQEDPVEAIQRDIGGAHGVLV 99 (166)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC----SEEEETTTSCHHHHHHHHHSSEEEEEE
T ss_pred CCCCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc----cccccccchhHHHHHHHhhcCCccccc
Confidence 467888999999984 777777777632599999999999998887532 2333222211110 1123334444
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+... ...++.+.++|+++|++++..
T Consensus 100 ~~~~--------------~~~~~~~~~~l~~~G~iv~~G 124 (166)
T d1llua2 100 TAVS--------------NSAFGQAIGMARRGGTIALVG 124 (166)
T ss_dssp CCSC--------------HHHHHHHHTTEEEEEEEEECC
T ss_pred cccc--------------chHHHHHHHHhcCCcEEEEEE
Confidence 3211 235777889999999988764
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=96.46 E-value=0.0098 Score=42.83 Aligned_cols=98 Identities=11% Similarity=0.164 Sum_probs=65.2
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC---C-CCCCCeeEE
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS---F-FEDESFDAV 119 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~---~-~~~~~~D~v 119 (252)
.++++.+||-+|+|. |..+..++.. |...++++|.+++-++.+++.-. ..++..+-.... . .....+|+|
T Consensus 29 ~~~~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga----~~~i~~~~~~~~~~~~~~~~~g~d~v 104 (172)
T d1h2ba2 29 TLYPGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA----DHVVDARRDPVKQVMELTRGRGVNVA 104 (172)
T ss_dssp TCCTTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC----SEEEETTSCHHHHHHHHTTTCCEEEE
T ss_pred ccCCCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc----ceeecCcccHHHHHHHhhCCCCceEE
Confidence 357788999999985 6666666654 66689999999998888887532 233322111100 0 123459999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+..-. -...++...++|+++|++++...
T Consensus 105 id~~g-------------~~~~~~~a~~~l~~~G~iv~~G~ 132 (172)
T d1h2ba2 105 MDFVG-------------SQATVDYTPYLLGRMGRLIIVGY 132 (172)
T ss_dssp EESSC-------------CHHHHHHGGGGEEEEEEEEECCC
T ss_pred EEecC-------------cchHHHHHHHHHhCCCEEEEEeC
Confidence 85422 23357888899999999988654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=96.46 E-value=0.015 Score=41.41 Aligned_cols=88 Identities=13% Similarity=0.122 Sum_probs=59.6
Q ss_pred CcEEEEcccC--cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 51 SRVLMVGCGN--ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 51 ~~vLD~G~G~--G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
++|.-+|+|. +.++..+.+.|+ +|++.|.+++.++.+++.- .+.....+.... ...|+|+..-
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~-~V~~~d~~~~~~~~a~~~~----~~~~~~~~~~~~-----~~~DiIilav----- 65 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGH-YLIGVSRQQSTCEKAVERQ----LVDEAGQDLSLL-----QTAKIIFLCT----- 65 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTT----SCSEEESCGGGG-----TTCSEEEECS-----
T ss_pred CEEEEEeecHHHHHHHHHHHHCCC-EEEEEECCchHHHHHHHhh----ccceeeeecccc-----cccccccccC-----
Confidence 3677889983 457777777777 8999999999888877642 122222222221 3589998643
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
++....++++++...++++-.++-.
T Consensus 66 -----p~~~~~~vl~~l~~~l~~~~iv~~~ 90 (165)
T d2f1ka2 66 -----PIQLILPTLEKLIPHLSPTAIVTDV 90 (165)
T ss_dssp -----CHHHHHHHHHHHGGGSCTTCEEEEC
T ss_pred -----cHhhhhhhhhhhhhhcccccceeec
Confidence 3356688999999998887766543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=96.39 E-value=0.008 Score=43.17 Aligned_cols=98 Identities=21% Similarity=0.321 Sum_probs=64.7
Q ss_pred hCCCCCcEEEEcc-c-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-----CCCCCee
Q 025475 46 YIPTSSRVLMVGC-G-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-----FEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~-G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~D 117 (252)
.+.++.+||-+|| | .|..+..++.. |..+|+++|.+++-++.+++.-. ..++..+-.+..+ ...+.+|
T Consensus 24 ~~~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga----~~~i~~~~~~~~~~~~~~~~~~~~d 99 (170)
T d1jvba2 24 SLDPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA----DYVINASMQDPLAEIRRITESKGVD 99 (170)
T ss_dssp TCCTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHTTTSCEE
T ss_pred CCCCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC----ceeeccCCcCHHHHHHHHhhcccch
Confidence 4678889999997 3 46666655554 66699999999998888887522 1333322222110 1245699
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+|+.... -...++.+.++++|||.+++...
T Consensus 100 ~vid~~g-------------~~~~~~~a~~~l~~~G~iv~~G~ 129 (170)
T d1jvba2 100 AVIDLNN-------------SEKTLSVYPKALAKQGKYVMVGL 129 (170)
T ss_dssp EEEESCC-------------CHHHHTTGGGGEEEEEEEEECCS
T ss_pred hhhcccc-------------cchHHHhhhhhcccCCEEEEecc
Confidence 9996422 23456677899999999988654
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.39 E-value=0.0014 Score=47.44 Aligned_cols=100 Identities=19% Similarity=0.150 Sum_probs=64.7
Q ss_pred hhCCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-cccCCCCCCCCCeeEEEe
Q 025475 45 KYIPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DVRDMSFFEDESFDAVID 121 (252)
Q Consensus 45 ~~~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-d~~~~~~~~~~~~D~v~~ 121 (252)
..++++.+||-+|+| .|..+..+++. |. +++++|.++.-++.+++.-.+ .++.. +-.+......+.+|+|+.
T Consensus 23 ~~~~~g~~vlI~GaG~vG~~a~q~ak~~G~-~vi~~~~~~~k~~~a~~lGa~----~~i~~~~~~~~~~~~~~~~d~vi~ 97 (168)
T d1piwa2 23 NGCGPGKKVGIVGLGGIGSMGTLISKAMGA-ETYVISRSSRKREDAMKMGAD----HYIATLEEGDWGEKYFDTFDLIVV 97 (168)
T ss_dssp TTCSTTCEEEEECCSHHHHHHHHHHHHHTC-EEEEEESSSTTHHHHHHHTCS----EEEEGGGTSCHHHHSCSCEEEEEE
T ss_pred hCcCCCCEEEEECCCCcchhHHHHhhhccc-cccccccchhHHHHhhccCCc----EEeeccchHHHHHhhhcccceEEE
Confidence 356788899999998 57888877766 65 899999999988888876321 22221 111111112357998886
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.-.-.+- . .++.+.++|+++|++++...
T Consensus 98 ~~~~~~~-------~----~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1piwa2 98 CASSLTD-------I----DFNIMPKAMKVGGRIVSISI 125 (168)
T ss_dssp CCSCSTT-------C----CTTTGGGGEEEEEEEEECCC
T ss_pred EecCCcc-------c----hHHHHHHHhhccceEEEecc
Confidence 4221110 1 13456788999999988653
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.32 E-value=0.0081 Score=43.13 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=63.5
Q ss_pred hhCCCCCcEEEEcccC-cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEecc
Q 025475 45 KYIPTSSRVLMVGCGN-ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKG 123 (252)
Q Consensus 45 ~~~~~~~~vLD~G~G~-G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~ 123 (252)
..++++.+||-+|+|. |.++..+++.--.+++++|.+++-.+.+++.-. ..++...-.+........+|+++..-
T Consensus 26 ~~~~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGa----d~~i~~~~~~~~~~~~~~~D~vid~~ 101 (168)
T d1uufa2 26 WQAGPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGA----DEVVNSRNADEMAAHLKSFDFILNTV 101 (168)
T ss_dssp TTCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTC----SEEEETTCHHHHHTTTTCEEEEEECC
T ss_pred hCCCCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCC----cEEEECchhhHHHHhcCCCceeeeee
Confidence 3477888999999974 778888877632377889999887888776532 23332211111112335699988642
Q ss_pred chhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 124 TLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 124 ~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
.-. ..++...++++++|++++...
T Consensus 102 g~~-------------~~~~~~~~~l~~~G~iv~~G~ 125 (168)
T d1uufa2 102 AAP-------------HNLDDFTTLLKRDGTMTLVGA 125 (168)
T ss_dssp SSC-------------CCHHHHHTTEEEEEEEEECCC
T ss_pred ecc-------------hhHHHHHHHHhcCCEEEEecc
Confidence 211 125566789999999988653
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.28 E-value=0.01 Score=42.83 Aligned_cols=93 Identities=15% Similarity=0.199 Sum_probs=63.0
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC--C-----CCCCCee
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS--F-----FEDESFD 117 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~--~-----~~~~~~D 117 (252)
+.++.+||-.|+ |.|..+..+++.--.++++++-+++-.+.+++.-. -.++ |..+.. + .....+|
T Consensus 26 ~~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga----~~vi--~~~~~~~~~~i~~~t~~~g~d 99 (174)
T d1yb5a2 26 VKAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA----HEVF--NHREVNYIDKIKKYVGEKGID 99 (174)
T ss_dssp CCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----SEEE--ETTSTTHHHHHHHHHCTTCEE
T ss_pred CCCCCEEEEEeccccccccccccccccCcccccccccccccccccccCc----cccc--ccccccHHHHhhhhhccCCce
Confidence 568889999996 36778888877633389999999988888876422 2333 222211 0 1345699
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+... . ...++...++|+++|.++...
T Consensus 100 ~v~d~~------------g--~~~~~~~~~~l~~~G~iv~~G 127 (174)
T d1yb5a2 100 IIIEML------------A--NVNLSKDLSLLSHGGRVIVVG 127 (174)
T ss_dssp EEEESC------------H--HHHHHHHHHHEEEEEEEEECC
T ss_pred EEeecc------------c--HHHHHHHHhccCCCCEEEEEe
Confidence 999642 1 235777889999999988754
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.24 E-value=0.0037 Score=48.56 Aligned_cols=55 Identities=16% Similarity=0.220 Sum_probs=47.7
Q ss_pred hHHHHHhhCCCCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC
Q 025475 39 LRPFVRKYIPTSSRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE 94 (252)
Q Consensus 39 l~~~~~~~~~~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~ 94 (252)
+..++.....++..|||.-||+|+.+......|- +++|+|+++..++.+++++..
T Consensus 197 ~~~~I~~~s~~gdiVLDpF~GSGTT~~Aa~~lgR-~~ig~El~~~y~~~a~~Ri~~ 251 (279)
T d1eg2a_ 197 IERLVRALSHPGSTVLDFFAGSGVTARVAIQEGR-NSICTDAAPVFKEYYQKQLTF 251 (279)
T ss_dssp HHHHHHHHSCTTCEEEETTCTTCHHHHHHHHHTC-EEEEEESSTHHHHHHHHHHHH
T ss_pred HHHHHHhhcCCCCEEEecCCCCcHHHHHHHHhCC-eEEEEeCCHHHHHHHHHHHHH
Confidence 4556666677888999999999999999998875 999999999999999998853
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=96.11 E-value=0.02 Score=41.28 Aligned_cols=101 Identities=11% Similarity=0.085 Sum_probs=64.0
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------CCCCCCee
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~~D 117 (252)
.++++.+||-+|||. |..+..+++. |..+|+++|.++.-++.+++.- ...++...-.+.. ....+.+|
T Consensus 24 ~~~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lG----a~~~i~~~~~d~~~~~~~~~~~~~G~d 99 (174)
T d1p0fa2 24 KVTPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELG----ATECLNPKDYDKPIYEVICEKTNGGVD 99 (174)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTT----CSEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcC----CcEEEcCCCchhHHHHHHHHhcCCCCc
Confidence 467888999999985 6666666665 7779999999999999998753 2233332222211 01234689
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHccc-CCcEEEEEEcCCh
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLK-PGGIYMLITYGDP 163 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~-~gG~l~i~~~~~~ 163 (252)
+|+..-. -...+......++ ++|.+++.....+
T Consensus 100 ~vid~~g-------------~~~~~~~~~~~~~~~~G~~v~vG~~~~ 133 (174)
T d1p0fa2 100 YAVECAG-------------RIETMMNALQSTYCGSGVTVVLGLASP 133 (174)
T ss_dssp EEEECSC-------------CHHHHHHHHHTBCTTTCEEEECCCCCT
T ss_pred EEEEcCC-------------CchHHHHHHHHHHHhcCceEEEEEecC
Confidence 9885321 2334555555564 4699888665433
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=96.00 E-value=0.0076 Score=48.87 Aligned_cols=113 Identities=13% Similarity=0.087 Sum_probs=68.9
Q ss_pred CcEEEEcccCcHhHHHHHHc-----------------CCCcEEEEeCCHHHHHHHHHhhcCC----CC--CeEEEccccC
Q 025475 51 SRVLMVGCGNALMSEDMVKD-----------------GYEDIVNIDISSVAIDMMKMKYEEI----PQ--LKYLQMDVRD 107 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~-----------------~~~~v~~vD~s~~~i~~a~~~~~~~----~~--v~~~~~d~~~ 107 (252)
.+|.|+||.+|..+..+... ..-+|..-|+-..-....-+.+... ++ +..+-+.+.+
T Consensus 53 ~~IADlGCS~G~Ntl~~v~~iI~~i~~~~~~~~~~~~pe~qvf~nDLP~NDFNtLF~~L~~~~~~~~~~f~~gvpGSFY~ 132 (359)
T d1m6ex_ 53 LAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIENDVDGVCFINGVPGSFYG 132 (359)
T ss_dssp ECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSCSCTTCEEEEEEESCSSS
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEeCCCCcchHHHHHHhccccccCCCCeEEEecCCchhh
Confidence 48999999999877433221 1224566666443322222222111 11 2233345544
Q ss_pred CCCCCCCCeeEEEeccchhhhcC---CC------------CC-----------hhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 108 MSFFEDESFDAVIDKGTLDSLMC---GT------------NA-----------PISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 108 ~~~~~~~~~D~v~~~~~l~~~~~---~~------------~~-----------~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
-. +|+++.|++++..++|++.- +. .+ ..|...+|+.=.+=|+|||.++++..+
T Consensus 133 rL-fP~~Slh~~~Ss~alHWLS~vP~~l~~n~~~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~GG~mvl~~~g 211 (359)
T d1m6ex_ 133 RL-FPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTCPQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILG 211 (359)
T ss_dssp CC-SCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSSCCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEE
T ss_pred hc-CCCCceEEeeehhhhhhhhcCCccccCCCCcEEEcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 44 78999999999999999731 10 01 125566777777889999999998876
Q ss_pred Chh
Q 025475 162 DPK 164 (252)
Q Consensus 162 ~~~ 164 (252)
++.
T Consensus 212 r~~ 214 (359)
T d1m6ex_ 212 RRS 214 (359)
T ss_dssp CSS
T ss_pred cCC
Confidence 554
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.99 E-value=0.02 Score=40.75 Aligned_cols=99 Identities=14% Similarity=0.108 Sum_probs=62.0
Q ss_pred hhCCCCCcEEEEcccC-cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----CCCCCCeeEE
Q 025475 45 KYIPTSSRVLMVGCGN-ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFDAV 119 (252)
Q Consensus 45 ~~~~~~~~vLD~G~G~-G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~~D~v 119 (252)
..+.++.+||-.|+|. |..+..+++....+++++|.++.-++.+++.-. ..++.-.-.+.. ....+..|+|
T Consensus 23 ~~~~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga----~~~~~~~~~~~~~~~~~~~~~~~~~v 98 (168)
T d1rjwa2 23 TGAKPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGA----DLVVNPLKEDAAKFMKEKVGGVHAAV 98 (168)
T ss_dssp HTCCTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTC----SEEECTTTSCHHHHHHHHHSSEEEEE
T ss_pred hCCCCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCc----ceecccccchhhhhcccccCCCceEE
Confidence 3467888999999985 677777777643489999999999888877522 122111111110 0123334444
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
++.. -...++...++|+++|.+++....
T Consensus 99 ~~~~--------------~~~~~~~a~~~l~~~G~i~~~g~~ 126 (168)
T d1rjwa2 99 VTAV--------------SKPAFQSAYNSIRRGGACVLVGLP 126 (168)
T ss_dssp ESSC--------------CHHHHHHHHHHEEEEEEEEECCCC
T ss_pred eecC--------------CHHHHHHHHHHhccCCceEecccc
Confidence 4321 134577888899999999886543
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=95.94 E-value=0.012 Score=42.16 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=61.6
Q ss_pred cEEEEcccC--cHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 52 RVLMVGCGN--ALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 52 ~vLD~G~G~--G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
+|+-+|||. |.++..+.+.| ..+++++|.+++.++.+++.- .+.....+... ......|+|+..-
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~----~~~~~~~~~~~---~~~~~~dlIila~----- 70 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLG----IIDEGTTSIAK---VEDFSPDFVMLSS----- 70 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTT----SCSEEESCGGG---GGGTCCSEEEECS-----
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhh----cchhhhhhhhh---hhccccccccccC-----
Confidence 588899994 55777777777 458999999999999888762 12222222222 1233579998643
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
++......++++...++++-.++-+.
T Consensus 71 -----p~~~~~~vl~~l~~~~~~~~ii~d~~ 96 (171)
T d2g5ca2 71 -----PVRTFREIAKKLSYILSEDATVTDQG 96 (171)
T ss_dssp -----CHHHHHHHHHHHHHHSCTTCEEEECC
T ss_pred -----Cchhhhhhhhhhhccccccccccccc
Confidence 33566888899999998876654433
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.79 E-value=0.0052 Score=49.21 Aligned_cols=76 Identities=21% Similarity=0.382 Sum_probs=56.4
Q ss_pred CCcEEEEcccCcHhHHHHHHcCC--CcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCeeEEEeccch
Q 025475 50 SSRVLMVGCGNALMSEDMVKDGY--EDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVIDKGTL 125 (252)
Q Consensus 50 ~~~vLD~G~G~G~~~~~l~~~~~--~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~~l 125 (252)
+.+|+|+.||.|.+...+...|. .-+.++|+++.+++..+.++ ++..+++.|+.++.. ++....|+++...++
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n~---~~~~~~~~di~~~~~~~~~~~~~Dll~ggpPC 78 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF---PHTQLLAKTIEGITLEEFDRLSFDMILMSPPC 78 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC---TTSCEECSCGGGCCHHHHHHHCCSEEEECCC-
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHHC---CCCCcccCchhhCCHhHcCCCCccEEEeeccc
Confidence 45899999999999988877774 23679999999999988886 346777888887641 223368999998877
Q ss_pred hhh
Q 025475 126 DSL 128 (252)
Q Consensus 126 ~~~ 128 (252)
..+
T Consensus 79 q~f 81 (343)
T d1g55a_ 79 QPF 81 (343)
T ss_dssp ---
T ss_pred ccc
Confidence 755
|
| >d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase AviRa domain: rRNA methyltransferase AviRa species: Streptomyces viridochromogenes [TaxId: 1938]
Probab=95.62 E-value=0.0086 Score=45.97 Aligned_cols=111 Identities=9% Similarity=-0.015 Sum_probs=75.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHcC-----------------------------------------CCcEEEEeCCHHHHHH
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDG-----------------------------------------YEDIVNIDISSVAIDM 87 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~-----------------------------------------~~~v~~vD~s~~~i~~ 87 (252)
.+..++|..||+|.+....+... ...++|.|+++.+++.
T Consensus 50 ~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~~~~i~G~D~d~~ai~~ 129 (249)
T d1o9ga_ 50 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEAAQA 129 (249)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred CCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccccCCccccccCHHHHHH
Confidence 44479999999999888766520 0145688888888888
Q ss_pred HH---HhhcC--C-CCCeEEEccccCCCCC----CCCCeeEEEeccchhhhcCCC--CChhhHHHHHHHHHHcccCCcEE
Q 025475 88 MK---MKYEE--I-PQLKYLQMDVRDMSFF----EDESFDAVIDKGTLDSLMCGT--NAPISASQMLGEVSRLLKPGGIY 155 (252)
Q Consensus 88 a~---~~~~~--~-~~v~~~~~d~~~~~~~----~~~~~D~v~~~~~l~~~~~~~--~~~~~~~~~l~~~~~~L~~gG~l 155 (252)
++ .++.. . ..+++.+.|+++..+. .....++||+|.++-.-.-.. ...+....+...+.+.+.....+
T Consensus 130 A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtNPPYGERl~~~~~~~~~~~~~~~~~l~~~~p~~s~~ 209 (249)
T d1o9ga_ 130 ARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLASALPAHAVI 209 (249)
T ss_dssp HHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred HHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeCCCccccccccccchHHHHHHHHHHHHccCCCCcEE
Confidence 74 34422 2 3688899998765421 234579999999987643211 23356778888888988766666
Q ss_pred EEEE
Q 025475 156 MLIT 159 (252)
Q Consensus 156 ~i~~ 159 (252)
+++.
T Consensus 210 ~it~ 213 (249)
T d1o9ga_ 210 AVTD 213 (249)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 6654
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.28 E-value=0.06 Score=38.41 Aligned_cols=97 Identities=13% Similarity=0.043 Sum_probs=62.9
Q ss_pred hCCCCCcEEEEccc-CcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC------CCCCCCee
Q 025475 46 YIPTSSRVLMVGCG-NALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS------FFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G-~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~------~~~~~~~D 117 (252)
.++++.+||-.||| .|.++..++.. |...|+++|.++.-.+.+++.-. ..++..+-.+.. ....+.+|
T Consensus 25 ~~~~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa----~~~i~~~~~~~~~~~~~~~~~~~g~D 100 (176)
T d2fzwa2 25 KLEPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA----TECINPQDFSKPIQEVLIEMTDGGVD 100 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC----SEEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC----cEEEeCCchhhHHHHHHHHHcCCCCc
Confidence 46788899999987 35566666665 67789999999998888887632 233322111110 01235699
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+..-. -...++.+..++++||.+++..
T Consensus 101 ~vid~~G-------------~~~~~~~~~~~~~~g~~~~~v~ 129 (176)
T d2fzwa2 101 YSFECIG-------------NVKVMRAALEACHKGWGVSVVV 129 (176)
T ss_dssp EEEECSC-------------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred EeeecCC-------------CHHHHHHHHHhhcCCceeEEEE
Confidence 9996422 2345777888899988766543
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=95.24 E-value=0.038 Score=39.86 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=60.9
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC-C-----CCCCCee
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-F-----FEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~-~-----~~~~~~D 117 (252)
.++++..|+-+|||. |..+..+++. |..+|+++|.+++-++.|++.-.. .++.-.-.+.. . .....+|
T Consensus 26 ~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~----~~in~~~~~~~~~~~~~~~~g~G~d 101 (176)
T d1d1ta2 26 KVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT----ECISPKDSTKPISEVLSEMTGNNVG 101 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS----EEECGGGCSSCHHHHHHHHHTSCCC
T ss_pred CCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc----EEECccccchHHHHHHHHhccccce
Confidence 367888999999984 6666666665 567999999999999999988532 23321111110 0 1234689
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+|+..-. ........+..+++.+|.+++...
T Consensus 102 ~vi~~~g------------~~~~~~~a~~~~~~~~G~~v~vG~ 132 (176)
T d1d1ta2 102 YTFEVIG------------HLETMIDALASCHMNYGTSVVVGV 132 (176)
T ss_dssp EEEECSC------------CHHHHHHHHTTSCTTTCEEEECSC
T ss_pred EEEEeCC------------chHHHHHHHHHhhcCCeEEEEEEc
Confidence 8885321 112222333444566688887654
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.72 E-value=0.0089 Score=42.87 Aligned_cols=98 Identities=10% Similarity=0.179 Sum_probs=64.3
Q ss_pred CCCcEEEEcccC-cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhh
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDS 127 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~ 127 (252)
++.+|+-+|+|. |..+...+..--.+|+++|.+++.++..+..+.. +++....+-..+. ..-...|+|+..-.+
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~--~~~~~~~~~~~l~-~~~~~aDivI~aali-- 105 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGS--RVELLYSNSAEIE-TAVAEADLLIGAVLV-- 105 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGG--GSEEEECCHHHHH-HHHHTCSEEEECCCC--
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcc--cceeehhhhhhHH-HhhccCcEEEEeeec--
Confidence 456999999995 6666666665334999999999999988887643 3455444433332 112358999975321
Q ss_pred hcCCCCChhhHHHHHHHHHHcccCCcEEE
Q 025475 128 LMCGTNAPISASQMLGEVSRLLKPGGIYM 156 (252)
Q Consensus 128 ~~~~~~~~~~~~~~l~~~~~~L~~gG~l~ 156 (252)
+....+.=+-+++.+.+|||..++
T Consensus 106 -----pG~~aP~lIt~~mv~~Mk~GSVIV 129 (168)
T d1pjca1 106 -----PGRRAPILVPASLVEQMRTGSVIV 129 (168)
T ss_dssp -----TTSSCCCCBCHHHHTTSCTTCEEE
T ss_pred -----CCcccCeeecHHHHhhcCCCcEEE
Confidence 222333334567788899998865
|
| >d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RPA4359-like domain: Hypothetical protein RPA4359 species: Rhodopseudomonas palustris [TaxId: 1076]
Probab=94.66 E-value=0.11 Score=42.01 Aligned_cols=75 Identities=15% Similarity=0.257 Sum_probs=49.2
Q ss_pred CCCcEEEEcccCcHhHHHHHHc--------CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEE
Q 025475 49 TSSRVLMVGCGNALMSEDMVKD--------GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~--------~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~ 120 (252)
+..+|+|+|+|+|.++..++.. -..+++.+|.|+...+.-++.++...++.++ .++.+.+ . ..-+|+
T Consensus 79 ~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l~~~~~i~w~-~~~~~~~---~-~~g~ii 153 (365)
T d1zkda1 79 QTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLAGIRNIHWH-DSFEDVP---E-GPAVIL 153 (365)
T ss_dssp SSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHSTTCSSEEEE-SSGGGSC---C-SSEEEE
T ss_pred ccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHhcccccceec-cChhhcc---c-CCeEEE
Confidence 3448999999999999887654 1336899999999877777776654444432 3333332 1 124666
Q ss_pred eccchhhh
Q 025475 121 DKGTLDSL 128 (252)
Q Consensus 121 ~~~~l~~~ 128 (252)
++..++.+
T Consensus 154 aNE~fDAl 161 (365)
T d1zkda1 154 ANEYFDVL 161 (365)
T ss_dssp EESSGGGS
T ss_pred ecccCccc
Confidence 66666655
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.97 E-value=0.17 Score=38.54 Aligned_cols=77 Identities=14% Similarity=0.256 Sum_probs=55.8
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCC---------CC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFF---------ED 113 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~---------~~ 113 (252)
+++.+|-.|++.|. .+..|++.|. +|+.++.+++.++.+.+.+... .++..+++|+.+.... ..
T Consensus 9 k~Kv~lITGas~GIG~aiA~~la~~G~-~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~Dls~~~~v~~~v~~~~~~~ 87 (257)
T d1xg5a_ 9 RDRLALVTGASGGIGAAVARALVQQGL-KVVGCARTVGNIEELAAECKSAGYPGTLIPYRCDLSNEEDILSMFSAIRSQH 87 (257)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCSSEEEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEEEccCCCHHHHHHHHHHHHHhc
Confidence 35689999998774 6677777787 8999999998888877666432 2577889999874311 13
Q ss_pred CCeeEEEeccchh
Q 025475 114 ESFDAVIDKGTLD 126 (252)
Q Consensus 114 ~~~D~v~~~~~l~ 126 (252)
+..|++|.+....
T Consensus 88 g~iD~lVnnAg~~ 100 (257)
T d1xg5a_ 88 SGVDICINNAGLA 100 (257)
T ss_dssp CCCSEEEECCCCC
T ss_pred CCCCEEEeccccc
Confidence 5789998876543
|
| >d2uyoa1 c.66.1.57 (A:14-310) Putative methyltransferase ML2640 {Mycobacterium leprae [TaxId: 1769]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: ML2640-like domain: Putative methyltransferase ML2640 species: Mycobacterium leprae [TaxId: 1769]
Probab=93.96 E-value=0.17 Score=39.59 Aligned_cols=103 Identities=15% Similarity=0.154 Sum_probs=69.5
Q ss_pred CcEEEEcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-----CCCCeEEEccccCCC-C------CCCCCeeE
Q 025475 51 SRVLMVGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-----IPQLKYLQMDVRDMS-F------FEDESFDA 118 (252)
Q Consensus 51 ~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-----~~~v~~~~~d~~~~~-~------~~~~~~D~ 118 (252)
..|+.+|||-=.-...+.......++=+|. |++++.-++.+.. ..+...+..|+.+.. . +.....-+
T Consensus 91 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-p~vi~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~L~~~g~d~~~ptl 169 (297)
T d2uyoa1 91 RQFVILASGLDSRAYRLDWPTGTTVYEIDQ-PKVLAYKSTTLAEHGVTPTADRREVPIDLRQDWPPALRSAGFDPSARTA 169 (297)
T ss_dssp CEEEEETCTTCCHHHHSCCCTTCEEEEEEC-HHHHHHHHHHHHHTTCCCSSEEEEEECCTTSCHHHHHHHTTCCTTSCEE
T ss_pred CeEEEeCcccCChhhhcCCCcCceEEEcCC-hHHHHHHHHHHHhcCCCCCceEEEecccccchHHHHHHhcCCCCCCCEE
Confidence 367779999755444442222335666664 7777766666532 124677778876521 0 22334567
Q ss_pred EEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 119 VIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 119 v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+++-+++.++ +.+...++++.+.+...+|+.+++-.
T Consensus 170 ~i~EGvl~YL-----~~~~~~~ll~~i~~~~~~GS~l~~d~ 205 (297)
T d2uyoa1 170 WLAEGLLMYL-----PATAQDGLFTEIGGLSAVGSRIAVET 205 (297)
T ss_dssp EEECSCGGGS-----CHHHHHHHHHHHHHTCCTTCEEEEEC
T ss_pred EEEccccccC-----CHHHHHHHHHHHHHhCCCCCEEEEEe
Confidence 7777889999 88999999999999999999987654
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.83 E-value=0.062 Score=38.59 Aligned_cols=94 Identities=16% Similarity=0.167 Sum_probs=60.1
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-----CCCCCeeEE
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-----FEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~D~v 119 (252)
+.++.+||-.|+ |.|..+..+++....+++++.-+++-.+.+++.- .-.++.-.-.++.+ .....+|+|
T Consensus 23 ~~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~G----a~~vi~~~~~~~~~~v~~~t~~~g~d~v 98 (183)
T d1pqwa_ 23 LSPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG----VEYVGDSRSVDFADEILELTDGYGVDVV 98 (183)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC----CSEEEETTCSTHHHHHHHHTTTCCEEEE
T ss_pred CCCCCEEEEECCCCCcccccchhhccccccceeeeccccccccccccc----ccccccCCccCHHHHHHHHhCCCCEEEE
Confidence 567789998774 3577888888763348888888888777777542 22332211111110 134569999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~ 158 (252)
+.... ...++.+.++|+++|+++..
T Consensus 99 ~d~~g--------------~~~~~~~~~~l~~~G~~v~~ 123 (183)
T d1pqwa_ 99 LNSLA--------------GEAIQRGVQILAPGGRFIEL 123 (183)
T ss_dssp EECCC--------------THHHHHHHHTEEEEEEEEEC
T ss_pred Eeccc--------------chHHHHHHHHhcCCCEEEEE
Confidence 96432 12466677899999998875
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=93.82 E-value=0.07 Score=38.18 Aligned_cols=95 Identities=9% Similarity=0.028 Sum_probs=62.5
Q ss_pred CCCCCcEEEEccc--CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-----CCCCCeeEE
Q 025475 47 IPTSSRVLMVGCG--NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-----FEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G--~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~D~v 119 (252)
++++.+||-.|+| .|..+..+++....++++++.+++-.+.+++.-. -+++...-.++.+ -....+|+|
T Consensus 26 l~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa----~~vi~~~~~d~~~~v~~~t~g~g~d~v 101 (179)
T d1qora2 26 IKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA----WQVINYREEDLVERLKEITGGKKVRVV 101 (179)
T ss_dssp CCTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC----SEEEETTTSCHHHHHHHHTTTCCEEEE
T ss_pred CCCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC----eEEEECCCCCHHHHHHHHhCCCCeEEE
Confidence 5678899998665 5778888877733499999999999988887632 2333221112110 124568998
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+....- ..+....+.++++|.+++..
T Consensus 102 ~d~~g~--------------~~~~~~~~~l~~~G~~v~~g 127 (179)
T d1qora2 102 YDSVGR--------------DTWERSLDCLQRRGLMVSFG 127 (179)
T ss_dssp EECSCG--------------GGHHHHHHTEEEEEEEEECC
T ss_pred EeCccH--------------HHHHHHHHHHhcCCeeeecc
Confidence 864321 13566788999999887644
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.53 E-value=0.17 Score=36.31 Aligned_cols=95 Identities=14% Similarity=0.054 Sum_probs=64.2
Q ss_pred CCCCCcEEEEccc--CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-----CCCCCeeEE
Q 025475 47 IPTSSRVLMVGCG--NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-----FEDESFDAV 119 (252)
Q Consensus 47 ~~~~~~vLD~G~G--~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~D~v 119 (252)
++++.+||-.|++ .|..+..+++....+++++.-+++-.+.++..-. -.++.-+-.+..+ .....+|+|
T Consensus 27 v~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga----~~vi~~~~~~~~~~~~~~~~~~Gvd~v 102 (182)
T d1v3va2 27 VKGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF----DAAFNYKTVNSLEEALKKASPDGYDCY 102 (182)
T ss_dssp CCSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC----SEEEETTSCSCHHHHHHHHCTTCEEEE
T ss_pred CCCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhh----hhhcccccccHHHHHHHHhhcCCCcee
Confidence 5678899988875 4677888887744599999999988888777632 2333222222110 134569999
Q ss_pred EeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 120 IDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 120 ~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+..-. .+.++...++|+++|.+++..
T Consensus 103 ~D~vG--------------~~~~~~~~~~l~~~G~~v~~G 128 (182)
T d1v3va2 103 FDNVG--------------GEFLNTVLSQMKDFGKIAICG 128 (182)
T ss_dssp EESSC--------------HHHHHHHGGGEEEEEEEEECC
T ss_pred EEecC--------------chhhhhhhhhccCCCeEEeec
Confidence 95321 346788899999999988753
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.42 E-value=0.33 Score=35.13 Aligned_cols=105 Identities=14% Similarity=0.126 Sum_probs=68.1
Q ss_pred cEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CCC-----------------CeEEEccc
Q 025475 52 RVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IPQ-----------------LKYLQMDV 105 (252)
Q Consensus 52 ~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~~-----------------v~~~~~d~ 105 (252)
+|.-+|+|+ | .++..++..|+ +|+.+|.+++.++.++.+... ... +.. ..|.
T Consensus 6 kvaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~-~~d~ 83 (192)
T d1f0ya2 6 HVTVIGGGLMGAGIAQVAAATGH-TVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIAT-STDA 83 (192)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEE-ESCH
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-cEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccc-cchh
Confidence 788899985 3 45666677776 999999999998888776531 010 111 1111
Q ss_pred cCCCCCCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 106 RDMSFFEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 106 ~~~~~~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
.+ .-...|+|+-.- ..+.+-..+++.++-+.++++-.+.-.+-..+.......
T Consensus 84 ~~----a~~~ad~ViEav--------~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~i~~la~~ 136 (192)
T d1f0ya2 84 AS----VVHSTDLVVEAI--------VENLKVKNELFKRLDKFAAEHTIFASNTSSLQITSIANA 136 (192)
T ss_dssp HH----HTTSCSEEEECC--------CSCHHHHHHHHHHHTTTSCTTCEEEECCSSSCHHHHHTT
T ss_pred Hh----hhcccceehhhc--------ccchhHHHHHHHHHhhhcccCceeeccCcccccchhhhh
Confidence 11 123478888532 234478899999999999998777665555555555444
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=93.12 E-value=0.035 Score=40.22 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=35.1
Q ss_pred CCCcEEEEcccC-cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc
Q 025475 49 TSSRVLMVGCGN-ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE 93 (252)
Q Consensus 49 ~~~~vLD~G~G~-G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~ 93 (252)
++.+|+-+|+|. |..+...+..--+.|+++|.++..++..+....
T Consensus 28 ~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~ 73 (183)
T d1l7da1 28 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGG 73 (183)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTC
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhc
Confidence 456999999996 666666665533499999999999999888753
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.00 E-value=0.24 Score=37.40 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=58.5
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCC---------CCCCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF---------FEDES 115 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~---------~~~~~ 115 (252)
.|..+|-.|++.|. ++..+++.|. +|+.+|.+++.++...+.+.. .+++..+.+|+.+... ...+.
T Consensus 6 ~Gkv~lITGas~GIG~~ia~~la~~G~-~V~l~~r~~~~l~~~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~i~~~~g~ 84 (244)
T d1yb1a_ 6 TGEIVLITGAGHGIGRLTAYEFAKLKS-KLVLWDINKHGLEETAAKCKGLGAKVHTFVVDCSNREDIYSSAKKVKAEIGD 84 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 36688888998774 7777888887 899999999988777776643 3478899999988531 12457
Q ss_pred eeEEEeccchhh
Q 025475 116 FDAVIDKGTLDS 127 (252)
Q Consensus 116 ~D~v~~~~~l~~ 127 (252)
.|+++.+....+
T Consensus 85 idilinnag~~~ 96 (244)
T d1yb1a_ 85 VSILVNNAGVVY 96 (244)
T ss_dssp CSEEEECCCCCC
T ss_pred CceeEeeccccc
Confidence 899988766544
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=92.92 E-value=0.024 Score=43.71 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=41.4
Q ss_pred eEEEccccCC-CCCCCCCeeEEEeccchhhhcC----CCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 99 KYLQMDVRDM-SFFEDESFDAVIDKGTLDSLMC----GTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 99 ~~~~~d~~~~-~~~~~~~~D~v~~~~~l~~~~~----~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.++++|..+. ..++++++|+|+.+.++.--.. ...-.+.....+.+++|+|+++|.+++..
T Consensus 6 ~~~~~D~le~l~~l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~ 71 (279)
T d1eg2a_ 6 VYDVCDCLDTLAKLPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFG 71 (279)
T ss_dssp EEEECCHHHHHHTSCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred eEEechHHHHHhhCcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEec
Confidence 3566676553 3367899999999987532100 00112456888999999999999988854
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.80 E-value=0.22 Score=38.18 Aligned_cols=110 Identities=17% Similarity=0.211 Sum_probs=70.4
Q ss_pred CCcE-EEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCCC---------CCCC
Q 025475 50 SSRV-LMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 50 ~~~v-LD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
+++| |--|++.|. .+..|++.+..+|+.++.+++.++.+.+.+.. ..++.++.+|+.+.... ..+.
T Consensus 2 g~rVAlVTGas~GIG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dvs~~~sv~~~~~~~~~~~g~ 81 (275)
T d1wmaa1 2 GIHVALVTGGNKGIGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQLQAEGLSPRFHQLDIDDLQSIRALRDFLRKEYGG 81 (275)
T ss_dssp CCCEEEESSCSSHHHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHHHHHTTCCCEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCeEEEECCCCCHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEEecCCHHHHHHHHHHHHHhcCC
Confidence 4566 555766553 45566665334899999999888877776643 35789999999885410 1257
Q ss_pred eeEEEeccchhhh-cCCCCChhhH-----------HHHHHHHHHcccCCcEEEEEE
Q 025475 116 FDAVIDKGTLDSL-MCGTNAPISA-----------SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 116 ~D~v~~~~~l~~~-~~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.|++|.+..+.+. .......++. ..+.+.+...|+++|.++.+.
T Consensus 82 iDiLVnNAGi~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~lp~m~~~g~ivnis 137 (275)
T d1wmaa1 82 LDVLVNNAGIAFKVADPTPFHIQAEVTMKTNFFGTRDVCTELLPLIKPQGRVVNVS 137 (275)
T ss_dssp EEEEEECCCCCCCTTCCSCHHHHHHHHHHHHTHHHHHHHHHHGGGEEEEEEEEEEC
T ss_pred cEEEEEcCCcCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Confidence 9999998765432 1111222222 234566678888899877654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.79 E-value=0.38 Score=36.19 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=54.8
Q ss_pred CCCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-----CCCCCeeEEE
Q 025475 49 TSSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-----FEDESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~D~v~ 120 (252)
.++++|-.|++.| ..+..+++.|. +|+.+|.+++.++...+.. +.+..+++|+.+... -.-++.|+++
T Consensus 6 ~GK~~lITGas~GIG~aia~~la~~G~-~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~d~~~v~~~~~~~g~iDilV 81 (244)
T d1pr9a_ 6 AGRRVLVTGAGKGIGRGTVQALHATGA-RVVAVSRTQADLDSLVREC---PGIEPVCVDLGDWEATERALGSVGPVDLLV 81 (244)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCCEEE
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHHHHHHHHhCCceEEE
Confidence 4678999999877 46777778887 8999999998877666554 457888899877431 1235799999
Q ss_pred eccchh
Q 025475 121 DKGTLD 126 (252)
Q Consensus 121 ~~~~l~ 126 (252)
.+....
T Consensus 82 nnAg~~ 87 (244)
T d1pr9a_ 82 NNAAVA 87 (244)
T ss_dssp ECCCCC
T ss_pred eccccc
Confidence 876443
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.74 E-value=0.2 Score=33.81 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=45.5
Q ss_pred CcEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEec
Q 025475 51 SRVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDK 122 (252)
Q Consensus 51 ~~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~ 122 (252)
++|+-+|+|. |. ++..|.+.|. +|+.+|.+++.++.++..+ .+.++.+|..+... ..-..+|.+++.
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~-~v~vid~d~~~~~~~~~~~----~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~ 72 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGH-DIVLIDIDKDICKKASAEI----DALVINGDCTKIKTLEDAGIEDADMYIAV 72 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC----SSEEEESCTTSHHHHHHTTTTTCSEEEEC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-CcceecCChhhhhhhhhhh----hhhhccCcccchhhhhhcChhhhhhhccc
Confidence 3677788763 43 3333444565 8999999999988877654 46789999887531 223468888863
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.65 E-value=0.45 Score=33.60 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=59.2
Q ss_pred hCCCCCcEEEEcccC-cHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-cccCCC-----CCCCCCee
Q 025475 46 YIPTSSRVLMVGCGN-ALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DVRDMS-----FFEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~-G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-d~~~~~-----~~~~~~~D 117 (252)
.++++.+||-+|+|. |..+..++.. +..+|+++|.+++-.+.+++.-.. ..+.- +..+.. ....+.+|
T Consensus 25 ~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~----~~i~~~~~~~~~~~~~~~~~~~G~D 100 (176)
T d2jhfa2 25 KVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT----ECVNPQDYKKPIQEVLTEMSNGGVD 100 (176)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS----EEECGGGCSSCHHHHHHHHTTSCBS
T ss_pred CCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCe----eEEecCCchhHHHHHHHHHhcCCCC
Confidence 477888999999974 3344444443 667999999999988888876422 22221 111110 01235699
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEEEc
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLITY 160 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~~~ 160 (252)
+|+..... ...++.+...++++ |.+++...
T Consensus 101 ~vid~~G~-------------~~~~~~a~~~~~~~~g~~~~~~~ 131 (176)
T d2jhfa2 101 FSFEVIGR-------------LDTMVTALSCCQEAYGVSVIVGV 131 (176)
T ss_dssp EEEECSCC-------------HHHHHHHHHHBCTTTCEEEECSC
T ss_pred EEEecCCc-------------hhHHHHHHHHHhcCCcceEEecC
Confidence 99964332 23355566677776 55555443
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.47 E-value=0.24 Score=37.90 Aligned_cols=77 Identities=12% Similarity=0.137 Sum_probs=57.3
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
.++++|-.|++.|. .+..+++.|. +|+.+|.+++.++.+.+.+...+.+.++.+|+.+.... ..+..
T Consensus 5 ~gKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 83 (268)
T d2bgka1 5 QDKVAIITGGAGGIGETTAKLFVRYGA-KVVIADIADDHGQKVCNNIGSPDVISFVHCDVTKDEDVRNLVDTTIAKHGKL 83 (268)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhcCCCceEEEEccCCCHHHHHHHHHHHHHHcCCc
Confidence 36688889988764 5666777776 89999999998888877776656788889999875311 12578
Q ss_pred eEEEeccchh
Q 025475 117 DAVIDKGTLD 126 (252)
Q Consensus 117 D~v~~~~~l~ 126 (252)
|+++.+....
T Consensus 84 D~lVnnAG~~ 93 (268)
T d2bgka1 84 DIMFGNVGVL 93 (268)
T ss_dssp CEEEECCCCC
T ss_pred ceeccccccc
Confidence 9999876543
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=92.09 E-value=0.031 Score=40.39 Aligned_cols=97 Identities=14% Similarity=0.211 Sum_probs=63.2
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEcc---ccCCCCCCCCCeeEEEe
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMD---VRDMSFFEDESFDAVID 121 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d---~~~~~~~~~~~~D~v~~ 121 (252)
.+++.+||--|+ |.|..+..+++....+|+++--+++-.+.+++.-.+ .++.-+ .........+.+|+|+-
T Consensus 29 ~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~----~vi~~~~~~~~~~~~~~~~gvD~vid 104 (176)
T d1xa0a2 29 TPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK----EVLAREDVMAERIRPLDKQRWAAAVD 104 (176)
T ss_dssp CGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS----EEEECC---------CCSCCEEEEEE
T ss_pred CCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc----eeeecchhHHHHHHHhhccCcCEEEE
Confidence 456778999986 457888888877444899999988888888775322 122111 01111124567999986
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.-. ...+....++|++||++++....
T Consensus 105 ~vg--------------g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 105 PVG--------------GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp CST--------------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred cCC--------------chhHHHHHHHhCCCceEEEeecc
Confidence 422 22377788999999999886654
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=92.08 E-value=0.26 Score=37.33 Aligned_cols=77 Identities=13% Similarity=0.198 Sum_probs=55.1
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCC---------CCCCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF---------FEDES 115 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~---------~~~~~ 115 (252)
.++.+|-.|++.|. .+..|++.|. +|+.+|.+++.++.+.+.++.. .++..+++|+.+... -.-+.
T Consensus 9 enKvalITGas~GIG~a~a~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~ 87 (251)
T d2c07a1 9 ENKVALVTGAGRGIGREIAKMLAKSVS-HVICISRTQKSCDSVVDEIKSFGYESSGYAGDVSKKEEISEVINKILTEHKN 87 (251)
T ss_dssp SSCEEEEESTTSHHHHHHHHHHTTTSS-EEEEEESSHHHHHHHHHHHHTTTCCEEEEECCTTCHHHHHHHHHHHHHHCSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHhcCC
Confidence 35678888887663 4555556676 8999999999888877777543 378889999987531 12367
Q ss_pred eeEEEeccchh
Q 025475 116 FDAVIDKGTLD 126 (252)
Q Consensus 116 ~D~v~~~~~l~ 126 (252)
.|+++.+....
T Consensus 88 iDilvnnag~~ 98 (251)
T d2c07a1 88 VDILVNNAGIT 98 (251)
T ss_dssp CCEEEECCCCC
T ss_pred ceeeeeccccc
Confidence 99999876544
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=92.01 E-value=0.042 Score=41.62 Aligned_cols=61 Identities=15% Similarity=0.131 Sum_probs=40.6
Q ss_pred eEEEccccCC-CCCCCCCeeEEEeccchhhhc---CCCCCh----hhHHHHHHHHHHcccCCcEEEEEE
Q 025475 99 KYLQMDVRDM-SFFEDESFDAVIDKGTLDSLM---CGTNAP----ISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 99 ~~~~~d~~~~-~~~~~~~~D~v~~~~~l~~~~---~~~~~~----~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+++++|..+. ..++++++|+|+.+.++.--. -...+. +.....+.+++|+|++||.+++..
T Consensus 6 ~i~~gDcle~l~~lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~ 74 (256)
T d1g60a_ 6 KIHQMNCFDFLDQVENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFN 74 (256)
T ss_dssp SEEECCHHHHHHHSCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred EEEeccHHHHHhhCcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCccccccc
Confidence 5778887663 236788999999998753110 000111 224567889999999999887654
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=92.00 E-value=0.038 Score=39.61 Aligned_cols=93 Identities=13% Similarity=0.073 Sum_probs=59.4
Q ss_pred hCCCCCcEEEEcc-c-CcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC--CCCCCeeEEEe
Q 025475 46 YIPTSSRVLMVGC-G-NALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF--FEDESFDAVID 121 (252)
Q Consensus 46 ~~~~~~~vLD~G~-G-~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~ 121 (252)
.++++.+||-.|+ | .|..+..+++....++++++.+++-.+.+++.-.+ .++ |..+... -....+|+|+.
T Consensus 24 ~~~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~----~~i--~~~~~~~~~~~~~g~D~v~d 97 (171)
T d1iz0a2 24 QARPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAE----EAA--TYAEVPERAKAWGGLDLVLE 97 (171)
T ss_dssp TCCTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCS----EEE--EGGGHHHHHHHTTSEEEEEE
T ss_pred CCCCCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccc----eee--ehhhhhhhhhcccccccccc
Confidence 4678889999885 4 47788888877434899999998877777764221 222 2222110 12346999985
Q ss_pred ccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 122 KGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 122 ~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.. . + .+....+.|+++|.++...
T Consensus 98 ~~----------G-~----~~~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 98 VR----------G-K----EVEESLGLLAHGGRLVYIG 120 (171)
T ss_dssp CS----------C-T----THHHHHTTEEEEEEEEEC-
T ss_pred cc----------c-h----hHHHHHHHHhcCCcEEEEe
Confidence 21 1 1 2456778999999988753
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=91.92 E-value=0.054 Score=42.36 Aligned_cols=62 Identities=18% Similarity=0.136 Sum_probs=42.9
Q ss_pred CeEEEccccCC-CCCCCCCeeEEEeccchhhhcC---CCCCh----hhHHHHHHHHHHcccCCcEEEEEE
Q 025475 98 LKYLQMDVRDM-SFFEDESFDAVIDKGTLDSLMC---GTNAP----ISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 98 v~~~~~d~~~~-~~~~~~~~D~v~~~~~l~~~~~---~~~~~----~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
-+++++|..+. ..++++++|+|+...++.-... +.... +...+.+.+++++|+++|.+++..
T Consensus 13 ~~l~~GD~le~l~~l~~~sVdli~tDPPY~~~~~~~~~~~~~~~y~~~~~~~l~~~~rvLk~~G~i~i~~ 82 (320)
T d1booa_ 13 GSMYIGDSLELLESFPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDF 82 (320)
T ss_dssp EEEEESCHHHHGGGSCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred CEEEehhHHHHHhhCccCCCCEEEECCCCcCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCcccCcccccc
Confidence 37888887653 3367899999999987632100 00011 335778999999999999998854
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=91.81 E-value=0.18 Score=38.34 Aligned_cols=77 Identities=13% Similarity=0.199 Sum_probs=55.1
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCC---------CCCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
.++++|-.|++.|. .+..+++.|. +|+.+|.+++.++.+.+.++.. .++..+++|+.+.... .-+.
T Consensus 10 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~l~~~g~~~~~~~~Dvs~~~~~~~~~~~~~~~~g~ 88 (255)
T d1fmca_ 10 DGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINADAANHVVDEIQQLGGQAFACRCDITSEQELSALADFAISKLGK 88 (255)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHTTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHSS
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCcEEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 46688888887653 5566666776 8999999998888777766543 4788899999875311 1257
Q ss_pred eeEEEeccchh
Q 025475 116 FDAVIDKGTLD 126 (252)
Q Consensus 116 ~D~v~~~~~l~ 126 (252)
.|+++.+....
T Consensus 89 iDilvnnAG~~ 99 (255)
T d1fmca_ 89 VDILVNNAGGG 99 (255)
T ss_dssp CCEEEECCCCC
T ss_pred CCEeeeCCcCC
Confidence 89999876543
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.66 E-value=0.44 Score=34.13 Aligned_cols=96 Identities=9% Similarity=0.062 Sum_probs=59.0
Q ss_pred CCCC--CcEEEEc--ccCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC----CCCCCCee
Q 025475 47 IPTS--SRVLMVG--CGNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS----FFEDESFD 117 (252)
Q Consensus 47 ~~~~--~~vLD~G--~G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~----~~~~~~~D 117 (252)
++++ ..||-.| .|.|..+..+++. |...++++..+++........+ +...++.-.-.+.. ......+|
T Consensus 26 ~~~G~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~---gad~vi~~~~~~~~~~~~~~~~~GvD 102 (187)
T d1vj1a2 26 ISAGSNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSEL---GFDAAVNYKTGNVAEQLREACPGGVD 102 (187)
T ss_dssp CCTTSCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHS---CCSEEEETTSSCHHHHHHHHCTTCEE
T ss_pred CCCCCCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcc---cceEEeeccchhHHHHHHHHhccCce
Confidence 4554 5688877 3579999999986 5657888888776555444333 11222322211111 01234699
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
+|+..-. ...++...+.|+++|+++..-
T Consensus 103 vv~D~vG--------------g~~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 103 VYFDNVG--------------GDISNTVISQMNENSHIILCG 130 (187)
T ss_dssp EEEESSC--------------HHHHHHHHTTEEEEEEEEEC-
T ss_pred EEEecCC--------------chhHHHHhhhccccccEEEec
Confidence 9985321 235778889999999988743
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=91.37 E-value=0.5 Score=33.23 Aligned_cols=96 Identities=13% Similarity=0.182 Sum_probs=57.1
Q ss_pred hCCCCCcEEEEcccCc-HhHHHHHH-cCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC-C-----CCCCCee
Q 025475 46 YIPTSSRVLMVGCGNA-LMSEDMVK-DGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-F-----FEDESFD 117 (252)
Q Consensus 46 ~~~~~~~vLD~G~G~G-~~~~~l~~-~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~-~-----~~~~~~D 117 (252)
.++++.+|+-+|+|.+ ..+..++. .+...|+++|.+++-++.+++.=. ..++..+-.+.. . .....+|
T Consensus 25 ~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA----d~~in~~~~~~~~~~~~~~~~~~G~d 100 (175)
T d1cdoa2 25 KVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA----TDFVNPNDHSEPISQVLSKMTNGGVD 100 (175)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC----CEEECGGGCSSCHHHHHHHHHTSCBS
T ss_pred CCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC----cEEEcCCCcchhHHHHHHhhccCCcc
Confidence 4678889999999874 33443333 366689999999998888887532 233332211111 0 1234689
Q ss_pred EEEeccchhhhcCCCCChhhHHHHHHHHHHcccCC-cEEEEE
Q 025475 118 AVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPG-GIYMLI 158 (252)
Q Consensus 118 ~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~g-G~l~i~ 158 (252)
+|+..-. -...+..+..++++| |.+++.
T Consensus 101 ~vid~~G-------------~~~~~~~a~~~~~~g~~~~~~~ 129 (175)
T d1cdoa2 101 FSLECVG-------------NVGVMRNALESCLKGWGVSVLV 129 (175)
T ss_dssp EEEECSC-------------CHHHHHHHHHTBCTTTCEEEEC
T ss_pred eeeeecC-------------CHHHHHHHHHHhhCCCcceeEE
Confidence 9986432 133455666666665 444443
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=91.21 E-value=0.8 Score=32.74 Aligned_cols=105 Identities=15% Similarity=0.174 Sum_probs=67.3
Q ss_pred cEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-------CCCCe----------EE-EccccCCCCC
Q 025475 52 RVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-------IPQLK----------YL-QMDVRDMSFF 111 (252)
Q Consensus 52 ~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-------~~~v~----------~~-~~d~~~~~~~ 111 (252)
+|--+|+|+ | .++..++..|. +|+.+|.+++.++.+..+... ..... +. ..+..+
T Consensus 6 ~vaViGaG~mG~~iA~~~a~~G~-~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---- 80 (186)
T d1wdka3 6 QAAVLGAGIMGGGIAYQSASKGT-PILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGD---- 80 (186)
T ss_dssp SEEEECCHHHHHHHHHHHHHTTC-CEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTT----
T ss_pred EEEEECcCHHHHHHHHHHHhCCC-eEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccc----
Confidence 688899985 3 34556667776 899999999998887665421 01010 11 111111
Q ss_pred CCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcCChhhhhhhc
Q 025475 112 EDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYGDPKARMIHL 170 (252)
Q Consensus 112 ~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~ 170 (252)
-...|+|+-. +.+ +.+-.++++.++-++++++-.+.-.+-+.+.......
T Consensus 81 -~~~adlViEa-v~E-------~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~i~~la~~ 130 (186)
T d1wdka3 81 -FGNVDLVVEA-VVE-------NPKVKQAVLAEVENHVREDAILASNTSTISISLLAKA 130 (186)
T ss_dssp -GGGCSEEEEC-CCS-------CHHHHHHHHHHHHTTSCTTCEEEECCSSSCHHHHGGG
T ss_pred -ccccceeeee-ecc-------hHHHHHHHHHHHHhhcCCCeeEEeccccccHHHHHHh
Confidence 1357888852 233 4488899999999999988887666655555555444
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.26 Score=37.30 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=54.6
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC---CCCeEEEccccCCCCC---------CCC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI---PQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~---~~v~~~~~d~~~~~~~---------~~~ 114 (252)
++.+|-.|++.|. .+..+++.|. +|+.+|.+++.++.+...+... .++.++.+|+.+.... .-+
T Consensus 3 GKvalITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G 81 (254)
T d2gdza1 3 GKVALVTGAAQGIGRAFAEALLLKGA-KVALVDWNLEAGVQCKAALHEQFEPQKTLFIQCDVADQQQLRDTFRKVVDHFG 81 (254)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHTTTSCGGGEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHhcCCCcEEEEEeecCCHHHHHHHHHHHHHHcC
Confidence 5678888987663 6666777776 8999999998887777666331 2678889999885311 125
Q ss_pred CeeEEEeccchh
Q 025475 115 SFDAVIDKGTLD 126 (252)
Q Consensus 115 ~~D~v~~~~~l~ 126 (252)
..|+++.+....
T Consensus 82 ~iDilVnnAg~~ 93 (254)
T d2gdza1 82 RLDILVNNAGVN 93 (254)
T ss_dssp CCCEEEECCCCC
T ss_pred CcCeeccccccc
Confidence 789999876544
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.86 E-value=0.82 Score=34.15 Aligned_cols=72 Identities=14% Similarity=0.278 Sum_probs=52.2
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC-----CCCCCeeEEE
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF-----FEDESFDAVI 120 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-----~~~~~~D~v~ 120 (252)
.++++|-.|++.|. .+..+++.|. +|+.+|.+++.++...+.. +.+..+++|+.+... -.-++.|+++
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~---~~~~~~~~Dv~~~~~v~~~~~~~g~iDilV 79 (242)
T d1cyda_ 4 SGLRALVTGAGKGIGRDTVKALHASGA-KVVAVTRTNSDLVSLAKEC---PGIEPVCVDLGDWDATEKALGGIGPVDLLV 79 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHS---TTCEEEECCTTCHHHHHHHHTTCCCCSEEE
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc---CCCeEEEEeCCCHHHHHHHHHHcCCCeEEE
Confidence 36688988987763 6666777776 8999999988776665554 467888999887531 1236789999
Q ss_pred eccc
Q 025475 121 DKGT 124 (252)
Q Consensus 121 ~~~~ 124 (252)
.+..
T Consensus 80 nnAg 83 (242)
T d1cyda_ 80 NNAA 83 (242)
T ss_dssp ECCC
T ss_pred ECCc
Confidence 7754
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=90.54 E-value=0.39 Score=36.27 Aligned_cols=76 Identities=11% Similarity=0.175 Sum_probs=56.8
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
++++|-.|++.|. .+..+++.|. +|+.+|.+++.++.+.+.+...+++.++.+|+.+.... .-+..|
T Consensus 6 gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~G~iD 84 (251)
T d1zk4a1 6 GKVAIITGGTLGIGLAIATKFVEEGA-KVMITGRHSDVGEKAAKSVGTPDQIQFFQHDSSDEDGWTKLFDATEKAFGPVS 84 (251)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHCCTTTEEEEECCTTCHHHHHHHHHHHHHHHSSCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhCCCCcEEEEEccCCCHHHHHHHHHHHHHHhCCce
Confidence 5678888887663 5667777786 89999999998888877776555788999999875311 125789
Q ss_pred EEEeccchh
Q 025475 118 AVIDKGTLD 126 (252)
Q Consensus 118 ~v~~~~~l~ 126 (252)
++|.+....
T Consensus 85 iLVnnAg~~ 93 (251)
T d1zk4a1 85 TLVNNAGIA 93 (251)
T ss_dssp EEEECCCCC
T ss_pred EEEeccccc
Confidence 998876543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=90.51 E-value=0.47 Score=35.97 Aligned_cols=75 Identities=15% Similarity=0.244 Sum_probs=55.9
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCCC---------CCCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSFF---------EDES 115 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~~---------~~~~ 115 (252)
.++++|-.|++.|. .+..|++.|. +|+.+|.+++.++.+.+.+... .++..+.+|+.+.... .-+.
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~ 82 (260)
T d1zema1 4 NGKVCLVTGAGGNIGLATALRLAEEGT-AIALLDMNREALEKAEASVREKGVEARSYVCDVTSEEAVIGTVDSVVRDFGK 82 (260)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTSCEEEEECCTTCHHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHHHHHHhCC
Confidence 36688888987763 6677778886 8999999999888887777543 3788899999875310 1257
Q ss_pred eeEEEeccc
Q 025475 116 FDAVIDKGT 124 (252)
Q Consensus 116 ~D~v~~~~~ 124 (252)
.|+++.+..
T Consensus 83 iDilVnnaG 91 (260)
T d1zema1 83 IDFLFNNAG 91 (260)
T ss_dssp CCEEEECCC
T ss_pred CCeehhhhc
Confidence 899997754
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=90.43 E-value=0.61 Score=35.07 Aligned_cols=105 Identities=12% Similarity=0.197 Sum_probs=64.3
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
.++++|-.|++.|. .+..+++.|. +|+.+|.+++..+.++.. +..++++|+.+.... .-++.
T Consensus 4 ~GK~alITGas~GIG~aia~~la~~G~-~V~~~~~~~~~~~~~~~~-----~~~~~~~Dv~~~~~v~~~~~~~~~~~G~i 77 (248)
T d2d1ya1 4 AGKGVLVTGGARGIGRAIAQAFAREGA-LVALCDLRPEGKEVAEAI-----GGAFFQVDLEDERERVRFVEEAAYALGRV 77 (248)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSTTHHHHHHHH-----TCEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-----CCeEEEEeCCCHHHHHHHHHHHHHhcCCC
Confidence 36688888987663 6667777786 899999998776655543 346788898875310 12578
Q ss_pred eEEEeccchhhh-cCCCCChhhHHH-----------HHHHHHHcccC--CcEEEEEE
Q 025475 117 DAVIDKGTLDSL-MCGTNAPISASQ-----------MLGEVSRLLKP--GGIYMLIT 159 (252)
Q Consensus 117 D~v~~~~~l~~~-~~~~~~~~~~~~-----------~l~~~~~~L~~--gG~l~i~~ 159 (252)
|+++.+...... ....-+.++..+ +.+.+...|++ +|.++...
T Consensus 78 DiLVnnAG~~~~~~~~~~~~e~~~~~~~vNl~g~~~~~~~~~p~m~~~~~G~Ii~is 134 (248)
T d2d1ya1 78 DVLVNNAAIAAPGSALTVRLPEWRRVLEVNLTAPMHLSALAAREMRKVGGGAIVNVA 134 (248)
T ss_dssp CEEEECCCCCCCBCTTTCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred CeEEEeCcCCCCCChhhCCHHHHHHHHHhhhhhHhhhhhhhcccccccccccccccc
Confidence 999877543322 112223344332 33445555643 56666544
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=90.14 E-value=0.14 Score=37.06 Aligned_cols=75 Identities=7% Similarity=0.030 Sum_probs=51.7
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC--CCCCeeEEEecc
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF--EDESFDAVIDKG 123 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~--~~~~~D~v~~~~ 123 (252)
++++||-.|++.|. .+..+++.|. +|+.++.+++.++...+.+....++.+..+|+.+.... .-+..|+++.+.
T Consensus 22 ~gK~vlItGasgGIG~~ia~~la~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~iDilin~A 100 (191)
T d1luaa1 22 KGKKAVVLAGTGPVGMRSAALLAGEGA-EVVLCGRKLDKAQAAADSVNKRFKVNVTAAETADDASRAEAVKGAHFVFTAG 100 (191)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHHHHHTCCCEEEECCSHHHHHHHTTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhhcc-chhhcccchHHHHHHHHHHHhccchhhhhhhcccHHHHHHHhcCcCeeeecC
Confidence 57799999986653 6667777776 89999999988877776664333556677777654211 124689988764
Q ss_pred c
Q 025475 124 T 124 (252)
Q Consensus 124 ~ 124 (252)
.
T Consensus 101 g 101 (191)
T d1luaa1 101 A 101 (191)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=89.98 E-value=1.1 Score=31.24 Aligned_cols=95 Identities=16% Similarity=0.242 Sum_probs=58.2
Q ss_pred CcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc---CCCCCeEEEcccc---CCCCCCCCCeeEEEec
Q 025475 51 SRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE---EIPQLKYLQMDVR---DMSFFEDESFDAVIDK 122 (252)
Q Consensus 51 ~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~---~~~~v~~~~~d~~---~~~~~~~~~~D~v~~~ 122 (252)
++|.-+|+|. | .++..|++.|+ +|+.+|.++.-++..+..-. ..+.......... +.. ..-..+|+|+..
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~-~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-e~~~~aD~iii~ 79 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQ-SVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIG-LAVKDADVILIV 79 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHH-HHHTTCSEEEEC
T ss_pred CEEEEECccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhH-hHhcCCCEEEEE
Confidence 4678889985 3 46666677776 99999999988877765421 1111111111111 111 001358998864
Q ss_pred cchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEE
Q 025475 123 GTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYML 157 (252)
Q Consensus 123 ~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i 157 (252)
- +......+++++...|+++-.+++
T Consensus 80 v----------~~~~~~~~~~~i~~~l~~~~~iv~ 104 (184)
T d1bg6a2 80 V----------PAIHHASIAANIASYISEGQLIIL 104 (184)
T ss_dssp S----------CGGGHHHHHHHHGGGCCTTCEEEE
T ss_pred E----------chhHHHHHHHHhhhccCCCCEEEE
Confidence 2 234567889999999998876654
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.54 E-value=0.72 Score=35.04 Aligned_cols=110 Identities=14% Similarity=0.145 Sum_probs=68.1
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCC-HHHHHHHHHhhcC-CCCCeEEEccccCCCC---------CCCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDIS-SVAIDMMKMKYEE-IPQLKYLQMDVRDMSF---------FEDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s-~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~---------~~~~ 114 (252)
.++++|-.|++.|. .+..+++.|. +|+.+|.+ ++.++.....+.. ..++.++++|+.+... ...+
T Consensus 17 ~gK~~lITGas~GIG~aia~~la~~Ga-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 95 (272)
T d1g0oa_ 17 EGKVALVTGAGRGIGREMAMELGRRGC-KVIVNYANSTESAEEVVAAIKKNGSDAACVKANVGVVEDIVRMFEEAVKIFG 95 (272)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCchHHHHHHHHHHHhhCCceeeEeCCCCCHHHHHHHHHHHHHHhC
Confidence 36789999988773 6777777786 89999887 5555555554433 3478889999987431 1125
Q ss_pred CeeEEEeccchhhhc-CCCCChhhH-----------HHHHHHHHHcccCCcEEEEEE
Q 025475 115 SFDAVIDKGTLDSLM-CGTNAPISA-----------SQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~-~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~i~~ 159 (252)
..|+++.+....... ....+.++. ..+++.+...|+.+|.+++..
T Consensus 96 ~idilV~nag~~~~~~~~~~~~~~~~~~~~~nl~~~~~~~~~~~~~m~~~g~~i~i~ 152 (272)
T d1g0oa_ 96 KLDIVCSNSGVVSFGHVKDVTPEEFDRVFTINTRGQFFVAREAYKHLEIGGRLILMG 152 (272)
T ss_dssp CCCEEEECCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHSCTTCEEEEEC
T ss_pred CCCccccccccchhhhhhhhhhhHHHHHhhhccceeeeecccccccccccccccccc
Confidence 789998876543220 111222333 333456667777777766643
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=89.26 E-value=0.64 Score=31.04 Aligned_cols=65 Identities=12% Similarity=0.248 Sum_probs=41.4
Q ss_pred cEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---CCCCeeEEEec
Q 025475 52 RVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---EDESFDAVIDK 122 (252)
Q Consensus 52 ~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---~~~~~D~v~~~ 122 (252)
+++-+|+|. |. ++..|.+.|. +|+.+|.+++.++.++.. ....+.+|..+...+ .-..+|.|++.
T Consensus 2 ~~iIiG~G~~G~~la~~L~~~g~-~vvvid~d~~~~~~~~~~-----~~~~~~gd~~~~~~l~~a~i~~a~~vi~~ 71 (134)
T d2hmva1 2 QFAVIGLGRFGGSIVKELHRMGH-EVLAVDINEEKVNAYASY-----ATHAVIANATEENELLSLGIRNFEYVIVA 71 (134)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTC-CCEEEESCHHHHHHTTTT-----CSEEEECCTTCTTHHHHHTGGGCSEEEEC
T ss_pred EEEEECCCHHHHHHHHHHHHCCC-eEEEecCcHHHHHHHHHh-----CCcceeeecccchhhhccCCccccEEEEE
Confidence 456667763 43 3334444565 899999999998887543 246778888775421 12457877753
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.11 E-value=0.44 Score=36.07 Aligned_cols=109 Identities=16% Similarity=0.114 Sum_probs=68.2
Q ss_pred CCCcEEEEcccCc---HhHHHHHHcCCCcEEE-EeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCC---------CCCC
Q 025475 49 TSSRVLMVGCGNA---LMSEDMVKDGYEDIVN-IDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF---------FEDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G---~~~~~l~~~~~~~v~~-vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~---------~~~~ 114 (252)
.++++|-.|++.| ..+..+++.|+ +|+. .+.++..++.+.+.+... .++..+.+|+.+... ...+
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~G~-~Vvi~~~~~~~~~~~~~~~~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 83 (259)
T d1ja9a_ 5 AGKVALTTGAGRGIGRGIAIELGRRGA-SVVVNYGSSSKAAEEVVAELKKLGAQGVAIQADISKPSEVVALFDKAVSHFG 83 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESSCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEcCCChHHHHHHHHHHHHcCCCceEecCCCCCHHHHHHHHHHHHHHcC
Confidence 3568888888776 57777778887 5665 567777777777766543 478899999987431 1235
Q ss_pred CeeEEEeccchhhhc-CCCCChhhH-----------HHHHHHHHHcccCCcEEEEE
Q 025475 115 SFDAVIDKGTLDSLM-CGTNAPISA-----------SQMLGEVSRLLKPGGIYMLI 158 (252)
Q Consensus 115 ~~D~v~~~~~l~~~~-~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~i~ 158 (252)
..|+++.+....+.. ....+.++. ..+++.+...|+.+|.+++.
T Consensus 84 ~idilinnag~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~m~~~g~~iii 139 (259)
T d1ja9a_ 84 GLDFVMSNSGMEVWCDELEVTQELFDKVFNLNTRGQFFVAQQGLKHCRRGGRIILT 139 (259)
T ss_dssp CEEEEECCCCCCCCCCGGGCCHHHHHHHHHHHTHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CCcEEEeccccccccccccchHHHHHHHHhhccceeeeehhhhhhhhhcCCccccc
Confidence 799999887654331 111222222 23445556667777766554
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=88.93 E-value=0.63 Score=35.19 Aligned_cols=78 Identities=10% Similarity=0.118 Sum_probs=56.5
Q ss_pred CCCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCC----------CCCC
Q 025475 49 TSSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF----------FEDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~----------~~~~ 114 (252)
+++++|-.|+..| ..+..+++.|. +|+.++.+++-++.+.+.+... .++.++.+|+.+..+ ...+
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~D~s~~~~~~~~~~~~~~~~~g 83 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGA-RVYTCSRNEKELDECLEIWREKGLNVEGSVCDLLSRTERDKLMQTVAHVFDG 83 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTTS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeecCCHHHHHHHHHHHHHHhCC
Confidence 4678999999876 36667777887 8999999998877777766443 467888999987531 1235
Q ss_pred CeeEEEeccchhh
Q 025475 115 SFDAVIDKGTLDS 127 (252)
Q Consensus 115 ~~D~v~~~~~l~~ 127 (252)
..|+++.+....+
T Consensus 84 ~idilinnag~~~ 96 (258)
T d1ae1a_ 84 KLNILVNNAGVVI 96 (258)
T ss_dssp CCCEEEECCCCCC
T ss_pred CcEEEeccccccc
Confidence 6889887654443
|
| >d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: FkbM-like domain: Methyltransferase FkbM species: Methylobacillus flagellatus [TaxId: 405]
Probab=87.98 E-value=0.49 Score=38.40 Aligned_cols=46 Identities=11% Similarity=0.228 Sum_probs=38.1
Q ss_pred CCCCcEEEEcccCcHhHHHHHHc--C-CCcEEEEeCCHHHHHHHHHhhc
Q 025475 48 PTSSRVLMVGCGNALMSEDMVKD--G-YEDIVNIDISSVAIDMMKMKYE 93 (252)
Q Consensus 48 ~~~~~vLD~G~G~G~~~~~l~~~--~-~~~v~~vD~s~~~i~~a~~~~~ 93 (252)
.++..++|+||-.|..+..++.. + ..+|+++|+++...+..+++++
T Consensus 211 ~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~ 259 (395)
T d2py6a1 211 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLR 259 (395)
T ss_dssp CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHH
T ss_pred CCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHH
Confidence 46679999999999988877654 2 4589999999999999988764
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=87.14 E-value=0.78 Score=34.65 Aligned_cols=77 Identities=8% Similarity=0.127 Sum_probs=55.7
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCC----------CCCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF----------FEDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~----------~~~~ 114 (252)
.++++|-.|++.|. .+..+++.|. +|+.+|.+++.++.+.+.+.. ..++.++.+|+.+... ...+
T Consensus 7 ~GK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~~~ 85 (259)
T d2ae2a_ 7 EGCTALVTGGSRGIGYGIVEELASLGA-SVYTCSRNQKELNDCLTQWRSKGFKVEASVCDLSSRSERQELMNTVANHFHG 85 (259)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCEEEEEECCTTCHHHHHHHHHHHHHHTTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCceEEEeeCCCHHHHHHHHHHHHHHhCC
Confidence 46788988988763 6677777786 899999999888877776643 3467888899977431 0124
Q ss_pred CeeEEEeccchh
Q 025475 115 SFDAVIDKGTLD 126 (252)
Q Consensus 115 ~~D~v~~~~~l~ 126 (252)
+.|+++.+....
T Consensus 86 ~idilvnnAG~~ 97 (259)
T d2ae2a_ 86 KLNILVNNAGIV 97 (259)
T ss_dssp CCCEEEECCCCC
T ss_pred CceEEEECCcee
Confidence 689999876543
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.78 E-value=1.2 Score=33.45 Aligned_cols=73 Identities=16% Similarity=0.266 Sum_probs=53.8
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
.++++|-.|++.|. .+..+++.|. +|+.+|.+++.++...+.. +++.++.+|+.+.... .-+..
T Consensus 5 ~GK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~~---~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 80 (250)
T d1ydea1 5 AGKVVVVTGGGRGIGAGIVRAFVNSGA-RVVICDKDESGGRALEQEL---PGAVFILCDVTQEDDVKTLVSETIRRFGRL 80 (250)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHC---TTEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHhc---CCCeEEEccCCCHHHHHHHHHHHHHhcCCC
Confidence 36689999987763 6667777776 8999999998887776654 4578889999875321 12578
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+++.+...
T Consensus 81 DilVnnAG~ 89 (250)
T d1ydea1 81 DCVVNNAGH 89 (250)
T ss_dssp CEEEECCCC
T ss_pred CEEEecccc
Confidence 999987653
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=86.28 E-value=1.2 Score=33.54 Aligned_cols=75 Identities=13% Similarity=0.167 Sum_probs=53.8
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC-CCCeEEEccccCCCC---------CCCCCe
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI-PQLKYLQMDVRDMSF---------FEDESF 116 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~-~~v~~~~~d~~~~~~---------~~~~~~ 116 (252)
++.+|--|++.|. .+..|++.|. +|+.+|.+++.++...+.+... .++..+++|+.+... -.-++.
T Consensus 2 gKValITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~l~~~g~~~~~~~~Dvs~~~~v~~~~~~~~~~~g~i 80 (257)
T d2rhca1 2 SEVALVTGATSGIGLEIARRLGKEGL-RVFVCARGEEGLRTTLKELREAGVEADGRTCDVRSVPEIEALVAAVVERYGPV 80 (257)
T ss_dssp CCEEEEESCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTCHHHHHHHHHHHHHHTCSC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 3456777877653 6666777786 8999999998888777766443 478889999987532 113678
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+++.+...
T Consensus 81 DilVnnAG~ 89 (257)
T d2rhca1 81 DVLVNNAGR 89 (257)
T ss_dssp SEEEECCCC
T ss_pred CEEEecccc
Confidence 999977543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.00 E-value=0.93 Score=34.45 Aligned_cols=74 Identities=14% Similarity=0.156 Sum_probs=54.6
Q ss_pred CCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEccccCCCCC---------CC
Q 025475 50 SSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDMSFF---------ED 113 (252)
Q Consensus 50 ~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d~~~~~~~---------~~ 113 (252)
++++|-.|++.| ..+..+++.|. +|+.+|.+++.++.+.+.+... .++..+++|+.+.... .-
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-~V~l~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~~~~ 83 (272)
T d1xkqa_ 5 NKTVIITGSSNGIGRTTAILFAQEGA-NVTITGRSSERLEETRQIILKSGVSEKQVNSVVADVTTEDGQDQIINSTLKQF 83 (272)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHTTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCCCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 567888888776 36677777786 8999999999888887776432 2578899999874311 12
Q ss_pred CCeeEEEeccc
Q 025475 114 ESFDAVIDKGT 124 (252)
Q Consensus 114 ~~~D~v~~~~~ 124 (252)
+..|+++.+..
T Consensus 84 g~iDilvnnAG 94 (272)
T d1xkqa_ 84 GKIDVLVNNAG 94 (272)
T ss_dssp SCCCEEEECCC
T ss_pred CCceEEEeCCc
Confidence 57899998754
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=85.84 E-value=1.8 Score=30.32 Aligned_cols=73 Identities=15% Similarity=0.215 Sum_probs=46.1
Q ss_pred CCCCcEEEEcccC-cHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccch
Q 025475 48 PTSSRVLMVGCGN-ALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTL 125 (252)
Q Consensus 48 ~~~~~vLD~G~G~-G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l 125 (252)
.++.+||-+|||. +......+..+..+++.+..+.+-.+...+.+....++.....+.. ....+|+|+..-.+
T Consensus 16 ~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~-----~~~~~diiIN~tp~ 89 (171)
T d1p77a1 16 RPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSI-----PLQTYDLVINATSA 89 (171)
T ss_dssp CTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGC-----CCSCCSEEEECCCC
T ss_pred CCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccc-----cccccceeeecccc
Confidence 3567999999974 4433333334556999999998877766666654334444443322 23479999976443
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=85.84 E-value=0.18 Score=35.71 Aligned_cols=96 Identities=20% Similarity=0.306 Sum_probs=62.1
Q ss_pred CCCCCcEEEEcc--cCcHhHHHHHHc-CCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEc-ccc--CCCCCCCCCeeEEE
Q 025475 47 IPTSSRVLMVGC--GNALMSEDMVKD-GYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQM-DVR--DMSFFEDESFDAVI 120 (252)
Q Consensus 47 ~~~~~~vLD~G~--G~G~~~~~l~~~-~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~-d~~--~~~~~~~~~~D~v~ 120 (252)
.+++..||--|+ |.|..+..+++. |. +|+++.-+++-.+.+++.-.+ .++.- +.. .......+.+|+|+
T Consensus 21 ~~~~~~VLV~gaaGgVG~~avQlAk~~Ga-~Viat~~s~~k~~~~~~lGad----~vi~~~~~~~~~~~~~~~~gvd~vi 95 (167)
T d1tt7a2 21 SPEKGSVLVTGATGGVGGIAVSMLNKRGY-DVVASTGNREAADYLKQLGAS----EVISREDVYDGTLKALSKQQWQGAV 95 (167)
T ss_dssp CGGGCCEEEESTTSHHHHHHHHHHHHHTC-CEEEEESSSSTHHHHHHHTCS----EEEEHHHHCSSCCCSSCCCCEEEEE
T ss_pred CCCCCEEEEeCCcchHHHHHHHHHHHcCC-ceEEEecCHHHHHHHHhhccc----ceEeccchhchhhhcccCCCceEEE
Confidence 345557888775 457888888887 55 899999988877777776432 22221 111 11112345799988
Q ss_pred eccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 121 DKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 121 ~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..-. ...+.+..+.|+++|.+++....
T Consensus 96 d~vg--------------g~~~~~~~~~l~~~G~iv~~G~~ 122 (167)
T d1tt7a2 96 DPVG--------------GKQLASLLSKIQYGGSVAVSGLT 122 (167)
T ss_dssp ESCC--------------THHHHHHHTTEEEEEEEEECCCS
T ss_pred ecCc--------------HHHHHHHHHHhccCceEEEeecc
Confidence 5421 23567788999999998876543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.78 E-value=1.3 Score=33.14 Aligned_cols=75 Identities=17% Similarity=0.235 Sum_probs=54.5
Q ss_pred CCCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
.++++|-.|++.| ..+..+++.|. +|+.+|.+++.++...+.+. .++.++++|+.+.... .-+..
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 81 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEGA-KVVFGDILDEEGKAMAAELA--DAARYVHLDVTQPAQWKAAVDTAVTAFGGL 81 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHTG--GGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhh--CcceEEEeecCCHHHHHHHHHHHHHHhCCC
Confidence 3568888898876 36677778887 89999999988877766654 2567888998875311 12568
Q ss_pred eEEEeccchh
Q 025475 117 DAVIDKGTLD 126 (252)
Q Consensus 117 D~v~~~~~l~ 126 (252)
|+++.+....
T Consensus 82 dilinnAG~~ 91 (244)
T d1nffa_ 82 HVLVNNAGIL 91 (244)
T ss_dssp CEEEECCCCC
T ss_pred eEEEECCccc
Confidence 9999876543
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=85.59 E-value=2.3 Score=29.96 Aligned_cols=94 Identities=15% Similarity=0.170 Sum_probs=59.5
Q ss_pred CCCcEEEEcc--cCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCC-CCCCCCeeEEEeccch
Q 025475 49 TSSRVLMVGC--GNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMS-FFEDESFDAVIDKGTL 125 (252)
Q Consensus 49 ~~~~vLD~G~--G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~-~~~~~~~D~v~~~~~l 125 (252)
++.+||-.|+ |.|..+.++++.--.+++++.-+++..+.+++.-.+ .++.-+-.+.. ......+|.|+-.
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~lGad----~vi~~~~~~~~~~l~~~~~~~vvD~--- 103 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSLGAS----RVLPRDEFAESRPLEKQVWAGAIDT--- 103 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHHTEE----EEEEGGGSSSCCSSCCCCEEEEEES---
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhhccc----cccccccHHHHHHHHhhcCCeeEEE---
Confidence 3347777664 367788888877434899999999888878765322 22322211111 1345668887632
Q ss_pred hhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 126 DSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 126 ~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+ - ...+....+.|+++|+++....
T Consensus 104 --V-------g--g~~~~~~l~~l~~~Griv~~G~ 127 (177)
T d1o89a2 104 --V-------G--DKVLAKVLAQMNYGGCVAACGL 127 (177)
T ss_dssp --S-------C--HHHHHHHHHTEEEEEEEEECCC
T ss_pred --c-------c--hHHHHHHHHHhccccceEeecc
Confidence 2 1 2357788899999999988643
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=85.56 E-value=0.97 Score=34.11 Aligned_cols=77 Identities=14% Similarity=0.061 Sum_probs=56.0
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCC-------C---CCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF-------F---EDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~-------~---~~~ 114 (252)
+++++|-.|++.|. .+..+++.|. +|+.+|.+++.++.+.+.+.. ..++..+.+|+.+... . ..+
T Consensus 7 kgK~alVTGas~GIG~aiA~~la~~Ga-~V~~~~r~~~~l~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~~g 85 (259)
T d1xq1a_ 7 KAKTVLVTGGTKGIGHAIVEEFAGFGA-VIHTCARNEYELNECLSKWQKKGFQVTGSVCDASLRPEREKLMQTVSSMFGG 85 (259)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHHTT
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCceEEEeccCCCHHHHHHHHHHHHHHhCC
Confidence 46788999988774 6777777887 899999999888777666643 3478889999986431 0 125
Q ss_pred CeeEEEeccchh
Q 025475 115 SFDAVIDKGTLD 126 (252)
Q Consensus 115 ~~D~v~~~~~l~ 126 (252)
..|+++.+....
T Consensus 86 ~idilvnnAG~~ 97 (259)
T d1xq1a_ 86 KLDILINNLGAI 97 (259)
T ss_dssp CCSEEEEECCC-
T ss_pred Cccccccccccc
Confidence 789999876543
|
| >d1rjda_ c.66.1.37 (A:) Leucine carboxy methyltransferase Ppm1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Leucine carboxy methyltransferase Ppm1 domain: Leucine carboxy methyltransferase Ppm1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.12 E-value=4.2 Score=31.65 Aligned_cols=106 Identities=14% Similarity=0.216 Sum_probs=68.6
Q ss_pred CCCcEEEEcccCcHhHHHHHHcCCCcEEEEeCC-HHHHHHHHHhhc-----------------------CCCCCeEEEcc
Q 025475 49 TSSRVLMVGCGNALMSEDMVKDGYEDIVNIDIS-SVAIDMMKMKYE-----------------------EIPQLKYLQMD 104 (252)
Q Consensus 49 ~~~~vLD~G~G~G~~~~~l~~~~~~~v~~vD~s-~~~i~~a~~~~~-----------------------~~~~v~~~~~d 104 (252)
+...|+-+|||.=.....+.+.. ..++.+|++ |+.++.=++.+. ..++.+.+.+|
T Consensus 96 ~~~QVV~LGaG~DTr~~Rl~~~~-~~~~~~EvD~p~vi~~K~~~i~~~~~l~~~l~~~~~~~~~~~~~~~s~~y~lv~~D 174 (328)
T d1rjda_ 96 EKVQVVNLGCGSDLRMLPLLQMF-PHLAYVDIDYNESVELKNSILRESEILRISLGLSKEDTAKSPFLIDQGRYKLAACD 174 (328)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHC-TTEEEEEEECHHHHHHHHHHHHHSHHHHHHHTCCSSCCCCTTEEEECSSEEEEECC
T ss_pred CCcEEEEeCCccchHHHHhhccC-CCcEEEECCcHHHHHHHHHHHHhchhhhhhccccccccccccccCCCCCeEEEecC
Confidence 44589999999887777776542 245555555 444443333221 01356788888
Q ss_pred ccCCCC--------CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 105 VRDMSF--------FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 105 ~~~~~~--------~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
+.+... +.....-++++-.++.++ +++...++++.+.+... +|.+++.+..
T Consensus 175 L~d~~~~~~l~~~~~d~~~PTl~iaE~vl~Yl-----~~~~~~~li~~~~~~f~-~~~~i~YE~i 233 (328)
T d1rjda_ 175 LNDITETTRLLDVCTKREIPTIVISECLLCYM-----HNNESQLLINTIMSKFS-HGLWISYDPI 233 (328)
T ss_dssp TTCHHHHHHHHHTTCCTTSCEEEEEESCGGGS-----CHHHHHHHHHHHHHHCS-SEEEEEEEEC
T ss_pred CCCcHhhHHHHHccCCCCCCeEEEEeeehhcC-----CHHHHHHHHHHHHHhCC-CceEEEeccC
Confidence 877421 122334578888889999 88899999999888774 5667676654
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=84.78 E-value=1.3 Score=31.41 Aligned_cols=94 Identities=7% Similarity=0.102 Sum_probs=51.5
Q ss_pred CCCCCcEEEEccc---CcHhHHHHHHc-CCCcEEEEeCC----HHHHHHHHHhhcCCCCCeEEEccccCCCC--------
Q 025475 47 IPTSSRVLMVGCG---NALMSEDMVKD-GYEDIVNIDIS----SVAIDMMKMKYEEIPQLKYLQMDVRDMSF-------- 110 (252)
Q Consensus 47 ~~~~~~vLD~G~G---~G~~~~~l~~~-~~~~v~~vD~s----~~~i~~a~~~~~~~~~v~~~~~d~~~~~~-------- 110 (252)
+.++.+|+-+.+| .|..+..+++. |. +++++--+ ++..+.+++. +.-.++.-+-.+...
T Consensus 26 ~~~g~~vli~~ga~g~vG~~aiqlAk~~Ga-~vI~~v~~~~~~~~~~~~~~~l----Gad~vi~~~~~~~~~~~~~v~~~ 100 (189)
T d1gu7a2 26 LTPGKDWFIQNGGTSAVGKYASQIGKLLNF-NSISVIRDRPNLDEVVASLKEL----GATQVITEDQNNSREFGPTIKEW 100 (189)
T ss_dssp CCTTTCEEEESCTTSHHHHHHHHHHHHHTC-EEEEEECCCTTHHHHHHHHHHH----TCSEEEEHHHHHCGGGHHHHHHH
T ss_pred CCCCCEEEEEeCCCchHHHHHHHHHhhcCC-eEEEEEecccccchHHhhhhhc----cccEEEeccccchhHHHHHHHHH
Confidence 5677778887333 46677777776 55 77766433 3334444443 222333332211110
Q ss_pred --CCCCCeeEEEeccchhhhcCCCCChhhHHHHHHHHHHcccCCcEEEEEE
Q 025475 111 --FEDESFDAVIDKGTLDSLMCGTNAPISASQMLGEVSRLLKPGGIYMLIT 159 (252)
Q Consensus 111 --~~~~~~D~v~~~~~l~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~ 159 (252)
.....+|+|+.. + . ...+....++|+++|.++...
T Consensus 101 ~~~~g~~vdvv~D~-----v-----g----~~~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 101 IKQSGGEAKLALNC-----V-----G----GKSSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp HHHHTCCEEEEEES-----S-----C----HHHHHHHHHTSCTTCEEEECC
T ss_pred HhhccCCceEEEEC-----C-----C----cchhhhhhhhhcCCcEEEEEC
Confidence 013468998853 2 1 123456678999999987653
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=84.77 E-value=1.7 Score=32.22 Aligned_cols=72 Identities=21% Similarity=0.257 Sum_probs=51.9
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
.++++|-.|++.|. .+..+++.|. +|+.+|.+++.++.+.+.+ +...+.+|+.+.... .-++.
T Consensus 4 ~gK~~lITGas~GIG~aia~~l~~~G~-~V~~~~r~~~~l~~~~~~~----~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 78 (242)
T d1ulsa_ 4 KDKAVLITGAAHGIGRATLELFAKEGA-RLVACDIEEGPLREAAEAV----GAHPVVMDVADPASVERGFAEALAHLGRL 78 (242)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTT----TCEEEECCTTCHHHHHHHHHHHHHHHSSC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHc----CCeEEEEecCCHHHHHHHHHHHHHhcCCc
Confidence 35688888987763 5666777776 8999999998877776554 467888999875321 12578
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+++.+...
T Consensus 79 DilVnnAG~ 87 (242)
T d1ulsa_ 79 DGVVHYAGI 87 (242)
T ss_dssp CEEEECCCC
T ss_pred eEEEECCcc
Confidence 998876543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=84.55 E-value=1.5 Score=32.89 Aligned_cols=72 Identities=18% Similarity=0.332 Sum_probs=51.9
Q ss_pred cEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC-CCCCeEEEccccCCCC---------CCCCCeeE
Q 025475 52 RVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE-IPQLKYLQMDVRDMSF---------FEDESFDA 118 (252)
Q Consensus 52 ~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~-~~~v~~~~~d~~~~~~---------~~~~~~D~ 118 (252)
.+|-.|++.|. .+..+++.|. +|+.+|.+++.++...+.+.. ..++..+.+|+.+... -.-+..|+
T Consensus 3 ValITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iDi 81 (255)
T d1gega_ 3 VALVTGAGQGIGKAIALRLVKDGF-AVAIADYNDATAKAVASEINQAGGHAVAVKVDVSDRDQVFAAVEQARKTLGGFDV 81 (255)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHHHHHHTTCCCE
T ss_pred EEEEcCCccHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHHHHHHHhCCccE
Confidence 35777877653 6667777786 899999999888877766643 3478888999987531 11367999
Q ss_pred EEeccc
Q 025475 119 VIDKGT 124 (252)
Q Consensus 119 v~~~~~ 124 (252)
+|.+..
T Consensus 82 lVnnAG 87 (255)
T d1gega_ 82 IVNNAG 87 (255)
T ss_dssp EEECCC
T ss_pred EEeccc
Confidence 997754
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=84.40 E-value=3.3 Score=27.14 Aligned_cols=88 Identities=10% Similarity=-0.037 Sum_probs=54.8
Q ss_pred ccCcHhHHHHHHcC-CCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---CCCCCeeEEEeccchhhhcCCCC
Q 025475 58 CGNALMSEDMVKDG-YEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---FEDESFDAVIDKGTLDSLMCGTN 133 (252)
Q Consensus 58 ~G~G~~~~~l~~~~-~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---~~~~~~D~v~~~~~l~~~~~~~~ 133 (252)
||.|..+..+++.- ..+++.+|.++...+..+.. .+.++.+|..+... ..-..++.+++...
T Consensus 6 ~G~g~~g~~l~~~L~~~~i~vi~~d~~~~~~~~~~-----~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~--------- 71 (129)
T d2fy8a1 6 CGWSESTLECLRELRGSEVFVLAEDENVRKKVLRS-----GANFVHGDPTRVSDLEKANVRGARAVIVNLE--------- 71 (129)
T ss_dssp ESCCHHHHHHHHTSCGGGEEEEESCTTHHHHHHHT-----TCEEEESCTTSHHHHHHTTCTTCSEEEECCS---------
T ss_pred ECCCHHHHHHHHHHcCCCCEEEEcchHHHHHHHhc-----CccccccccCCHHHHHHhhhhcCcEEEEecc---------
Confidence 45677777777762 33789999999988776543 57889999877431 23346777775321
Q ss_pred ChhhHHHHHHHHHHcccCCcEEEEEEc
Q 025475 134 APISASQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 134 ~~~~~~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
+ +...-.+-...+.+.|...+++...
T Consensus 72 ~-d~~n~~~~~~~r~~~~~~~iia~~~ 97 (129)
T d2fy8a1 72 S-DSETIHCILGIRKIDESVRIIAEAE 97 (129)
T ss_dssp S-HHHHHHHHHHHHHHCSSSCEEEECS
T ss_pred c-hhhhHHHHHHHHHHCCCceEEEEEc
Confidence 1 2222223334456788877665543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=83.91 E-value=0.21 Score=34.81 Aligned_cols=97 Identities=13% Similarity=0.116 Sum_probs=54.3
Q ss_pred CcEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhh
Q 025475 51 SRVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSL 128 (252)
Q Consensus 51 ~~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~ 128 (252)
++|+-+|+|. | .++..|++.|+ +|+.++.++...+..+. ...........-..+.+ .....+|+|+..--
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~-~V~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~D~iii~vk---- 72 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGH-EVQGWLRVPQPYCSVNL--VETDGSIFNESLTANDP-DFLATSDLLLVTLK---- 72 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTC-EEEEECSSCCSEEEEEE--ECTTSCEEEEEEEESCH-HHHHTCSEEEECSC----
T ss_pred CEEEEECcCHHHHHHHHHHHHCCC-ceEEEEcCHHHhhhhcc--ccCCccccccccccchh-hhhcccceEEEeec----
Confidence 4789999985 4 46666667776 89999987641110000 00000011000011111 12246899986432
Q ss_pred cCCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 129 MCGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 129 ~~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
..+....++.+...++++..++....+
T Consensus 73 ------a~~~~~~~~~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 73 ------AWQVSDAVKSLASTLPVTTPILLIHNG 99 (167)
T ss_dssp ------GGGHHHHHHHHHTTSCTTSCEEEECSS
T ss_pred ------ccchHHHHHhhccccCcccEEeeccCc
Confidence 245577888899999888877765543
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=83.64 E-value=2.3 Score=31.84 Aligned_cols=75 Identities=20% Similarity=0.269 Sum_probs=54.4
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcC---CCCCeEEEccccCCCCC---------CCC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEE---IPQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~---~~~v~~~~~d~~~~~~~---------~~~ 114 (252)
++++|-.|++.|. .+..+++.|. +|+.+|.+++.++.....+.. ..++..+++|+.+.... .-+
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~G 82 (258)
T d1iy8a_ 4 DRVVLITGGGSGLGRATAVRLAAEGA-KLSLVDVSSEGLEASKAAVLETAPDAEVLTTVADVSDEAQVEAYVTATTERFG 82 (258)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHCTTCCEEEEECCTTSHHHHHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhCCCCeEEEEeccCCCHHHHHHHHHHHHHHhC
Confidence 5678888988764 6777888886 899999999888776665521 23677889999875321 125
Q ss_pred CeeEEEeccch
Q 025475 115 SFDAVIDKGTL 125 (252)
Q Consensus 115 ~~D~v~~~~~l 125 (252)
..|++|.+..+
T Consensus 83 ~iDiLVnnAG~ 93 (258)
T d1iy8a_ 83 RIDGFFNNAGI 93 (258)
T ss_dssp CCSEEEECCCC
T ss_pred CCCEEEECCcc
Confidence 78999987543
|
| >d2oo3a1 c.66.1.59 (A:9-279) Uncharacterized protein LPG1296 {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: LPG1296-like domain: Uncharacterized protein LPG1296 species: Legionella pneumophila [TaxId: 446]
Probab=83.43 E-value=1.5 Score=33.40 Aligned_cols=100 Identities=7% Similarity=0.019 Sum_probs=72.3
Q ss_pred EcccCcHhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccC-----CCCCCCCCeeEEEeccchhhhcC
Q 025475 56 VGCGNALMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRD-----MSFFEDESFDAVIDKGTLDSLMC 130 (252)
Q Consensus 56 ~G~G~G~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~-----~~~~~~~~~D~v~~~~~l~~~~~ 130 (252)
+=+|+-.++..+++. ..+.+.+|+.+.-.+..++++....++++...|..+ +| +...--+|++...++--
T Consensus 89 ~YPGSP~ia~~llR~-~Drl~l~ELHp~e~~~L~~~~~~~~~~~v~~~DG~~~l~allP--P~~rRgLVLIDPpYE~k-- 163 (271)
T d2oo3a1 89 YYPGSPYFAINQLRS-QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLP--PPEKRGLIFIDPSYERK-- 163 (271)
T ss_dssp EEECHHHHHHHHSCT-TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCS--CTTSCEEEEECCCCCST--
T ss_pred cCCCCHHHHHHhCCC-CCceEEeecCHHHHHHHHHHhccCCCceEEcCchHHHHHhhCC--CCCCceEEEecCCcCCH--
Confidence 345555565555555 348999999999999999988777789999999865 23 33455699998887765
Q ss_pred CCCChhhHHHHHHHHHHccc--CCcEEEEEEcCChhh
Q 025475 131 GTNAPISASQMLGEVSRLLK--PGGIYMLITYGDPKA 165 (252)
Q Consensus 131 ~~~~~~~~~~~l~~~~~~L~--~gG~l~i~~~~~~~~ 165 (252)
++..++++.+...++ +.|.++|..+.....
T Consensus 164 -----~ey~~v~~~l~~a~kr~~~g~~~iWYPi~~~~ 195 (271)
T d2oo3a1 164 -----EEYKEIPYAIKNAYSKFSTGLYCVWYPVVNKA 195 (271)
T ss_dssp -----THHHHHHHHHHHHHHHCTTSEEEEEEEESSHH
T ss_pred -----HHHHHHHHHHHHHHHhCCCceEEEEeeccCcH
Confidence 677777776666665 688888877544433
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.37 E-value=1.2 Score=33.83 Aligned_cols=74 Identities=14% Similarity=0.199 Sum_probs=54.1
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEccccCCCCC---------CC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDMSFF---------ED 113 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d~~~~~~~---------~~ 113 (252)
++++|-.|++.|. .+..+++.|. +|+.+|.+++.++.+.+.+... .++..+.+|+.+.... .-
T Consensus 4 gK~alITGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~~~~~~ 82 (274)
T d1xhla_ 4 GKSVIITGSSNGIGRSAAVIFAKEGA-QVTITGRNEDRLEETKQQILKAGVPAEKINAVVADVTEASGQDDIINTTLAKF 82 (274)
T ss_dssp TCEEEETTCSSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHcCCCCcceEEEEeeCCCHHHHHHHHHHHHHHc
Confidence 5678888887763 6677777776 8999999998888777766332 2578899999875311 12
Q ss_pred CCeeEEEeccc
Q 025475 114 ESFDAVIDKGT 124 (252)
Q Consensus 114 ~~~D~v~~~~~ 124 (252)
+..|+++.+..
T Consensus 83 G~iDilVnnAG 93 (274)
T d1xhla_ 83 GKIDILVNNAG 93 (274)
T ss_dssp SCCCEEEECCC
T ss_pred CCceEEEeecc
Confidence 57899998754
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=83.23 E-value=1.7 Score=33.09 Aligned_cols=76 Identities=16% Similarity=0.113 Sum_probs=53.2
Q ss_pred CCCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc--CCCCCeEEEccccCCCC---------CCCC
Q 025475 49 TSSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYE--EIPQLKYLQMDVRDMSF---------FEDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~--~~~~v~~~~~d~~~~~~---------~~~~ 114 (252)
+++++|-.|++.| ..+..|++.|. +|+.+|.++..++...+.+. ...++.++.+|+.+... ...+
T Consensus 24 ~gK~alITGas~GIG~aiA~~la~~Ga-~Vii~~r~~~~l~~~~~~l~~~~g~~~~~~~~D~~~~~~v~~~~~~~~~~~g 102 (294)
T d1w6ua_ 24 QGKVAFITGGGTGLGKGMTTLLSSLGA-QCVIASRKMDVLKATAEQISSQTGNKVHAIQCDVRDPDMVQNTVSELIKVAG 102 (294)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHSSCEEEEECCTTCHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEECCHHHHHHHHHHHHHhcCCceEEEEecccChHHHHHHhhhhhhhcc
Confidence 3568999998776 46667777786 99999999887766555442 13467788899877531 1246
Q ss_pred CeeEEEeccch
Q 025475 115 SFDAVIDKGTL 125 (252)
Q Consensus 115 ~~D~v~~~~~l 125 (252)
..|+++.+...
T Consensus 103 ~iDilvnnAg~ 113 (294)
T d1w6ua_ 103 HPNIVINNAAG 113 (294)
T ss_dssp SCSEEEECCCC
T ss_pred ccchhhhhhhh
Confidence 78999877543
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=82.67 E-value=1.9 Score=32.29 Aligned_cols=75 Identities=16% Similarity=0.221 Sum_probs=53.6
Q ss_pred CCCcEEEEcccCc---HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGNA---LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G---~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
+++++|-.|++.| ..+..+++.|. +|+.+|.+++.++...+.+. .++.++++|+.+.... .-++.
T Consensus 4 ~gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~i 80 (254)
T d1hdca_ 4 SGKTVIITGGARGLGAEAARQAVAAGA-RVVLADVLDEEGAATARELG--DAARYQHLDVTIEEDWQRVVAYAREEFGSV 80 (254)
T ss_dssp CCSEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTTG--GGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC--CceEEEEcccCCHHHHHHHHHHHHHHcCCc
Confidence 3668899998877 36777777787 89999999987766655542 3578899999875311 12578
Q ss_pred eEEEeccchh
Q 025475 117 DAVIDKGTLD 126 (252)
Q Consensus 117 D~v~~~~~l~ 126 (252)
|+++.+....
T Consensus 81 DilVnnAg~~ 90 (254)
T d1hdca_ 81 DGLVNNAGIS 90 (254)
T ss_dssp CEEEECCCCC
T ss_pred cEEEecCccc
Confidence 9988775443
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=82.60 E-value=1.3 Score=33.29 Aligned_cols=75 Identities=8% Similarity=0.131 Sum_probs=53.2
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCC----CCCeEEEccccCCCCC---------CC
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEI----PQLKYLQMDVRDMSFF---------ED 113 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~----~~v~~~~~d~~~~~~~---------~~ 113 (252)
++.+|-.|++.|. .+..+++.|. +|+.+|.+++.++.+.+.+... .++.++++|+.+.... .-
T Consensus 5 gKvalVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~l~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~~~~~~ 83 (264)
T d1spxa_ 5 EKVAIITGSSNGIGRATAVLFAREGA-KVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKF 83 (264)
T ss_dssp TCEEEETTTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred CCEEEEeCcCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhcCCCcCceEEEEccCCCHHHHHHHHHHHHHHh
Confidence 5678888887663 6667777786 8999999998888777665321 2578899999875311 12
Q ss_pred CCeeEEEeccch
Q 025475 114 ESFDAVIDKGTL 125 (252)
Q Consensus 114 ~~~D~v~~~~~l 125 (252)
+..|+++.+...
T Consensus 84 g~iDilvnnAG~ 95 (264)
T d1spxa_ 84 GKLDILVNNAGA 95 (264)
T ss_dssp SCCCEEEECCC-
T ss_pred CCCCEeeccccc
Confidence 578999887543
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=82.28 E-value=1.8 Score=32.46 Aligned_cols=75 Identities=20% Similarity=0.305 Sum_probs=54.5
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCee
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~D 117 (252)
++++|-.|++.|. .+..+++.|. +|+.+|.+++.++...+.+. +++..+.+|+.+.... .-+..|
T Consensus 5 gK~alVTGas~GIG~aia~~la~~Ga-~V~~~~r~~~~l~~~~~~~~--~~~~~~~~Dvt~~~~v~~~~~~~~~~~g~iD 81 (256)
T d1k2wa_ 5 GKTALITGSARGIGRAFAEAYVREGA-RVAIADINLEAARATAAEIG--PAACAIALDVTDQASIDRCVAELLDRWGSID 81 (256)
T ss_dssp TEEEEEETCSSHHHHHHHHHHHHTTE-EEEEEESCHHHHHHHHHHHC--TTEEEEECCTTCHHHHHHHHHHHHHHHSCCC
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHhC--CceEEEEeeCCCHHHHHHHHHHHHHHhCCcc
Confidence 5688888987763 6667777776 89999999988777666652 3678889999875321 125789
Q ss_pred EEEeccchhh
Q 025475 118 AVIDKGTLDS 127 (252)
Q Consensus 118 ~v~~~~~l~~ 127 (252)
+++.+....+
T Consensus 82 ilVnnAg~~~ 91 (256)
T d1k2wa_ 82 ILVNNAALFD 91 (256)
T ss_dssp EEEECCCCCC
T ss_pred EEEeeccccc
Confidence 9998765443
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=82.19 E-value=5.4 Score=26.84 Aligned_cols=86 Identities=17% Similarity=0.249 Sum_probs=49.9
Q ss_pred cEEEEcccC-cH-hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 52 RVLMVGCGN-AL-MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 52 ~vLD~G~G~-G~-~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
+|.=+|||. |. ++..+.+.+..++++.|.+++.++...+.. .+... .+.... ...|+|+.. +
T Consensus 2 kI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~----~~~~~-~~~~~v-----~~~Div~la-----v- 65 (152)
T d1yqga2 2 NVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKEL----GVETS-ATLPEL-----HSDDVLILA-----V- 65 (152)
T ss_dssp EEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHT----CCEEE-SSCCCC-----CTTSEEEEC-----S-
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhc----ccccc-cccccc-----cccceEEEe-----c-
Confidence 567788874 33 445556666459999999998877766653 23321 222222 247998853 2
Q ss_pred CCCCChhhHHHHHHHHHHcccCCcEEEEEEcC
Q 025475 130 CGTNAPISASQMLGEVSRLLKPGGIYMLITYG 161 (252)
Q Consensus 130 ~~~~~~~~~~~~l~~~~~~L~~gG~l~i~~~~ 161 (252)
.|.+. ..+.+-+++.+.++++...
T Consensus 66 ----kP~~~----~~v~~~l~~~~~~viS~~a 89 (152)
T d1yqga2 66 ----KPQDM----EAACKNIRTNGALVLSVAA 89 (152)
T ss_dssp ----CHHHH----HHHHTTCCCTTCEEEECCT
T ss_pred ----CHHHH----HHhHHHHhhcccEEeeccc
Confidence 22333 3344445666777776544
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=81.96 E-value=2.3 Score=31.72 Aligned_cols=76 Identities=13% Similarity=0.181 Sum_probs=53.3
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc-C-CCCCeEEEccccCCCCC---------CCC
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYE-E-IPQLKYLQMDVRDMSFF---------EDE 114 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~-~-~~~v~~~~~d~~~~~~~---------~~~ 114 (252)
+++++|-.|++.|. .+..+++.|. +|+.+|.+++.++...+.+. . ..++..+.+|+.+.... .-+
T Consensus 4 ~gK~~lITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~~~~~~~~l~~~~g~~~~~~~~Dv~~~~~v~~~~~~~~~~~g 82 (251)
T d1vl8a_ 4 RGRVALVTGGSRGLGFGIAQGLAEAGC-SVVVASRNLEEASEAAQKLTEKYGVETMAFRCDVSNYEEVKKLLEAVKEKFG 82 (251)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHHHCCCEEEEECCTTCHHHHHHHHHHHHHHHS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHHHhCCcEEEEEccCCCHHHHHHHHHHHHHHcC
Confidence 36688999987763 6677778887 89999999887666554442 2 23677889999874311 125
Q ss_pred CeeEEEeccch
Q 025475 115 SFDAVIDKGTL 125 (252)
Q Consensus 115 ~~D~v~~~~~l 125 (252)
..|++|.+...
T Consensus 83 ~iDiLVnnAG~ 93 (251)
T d1vl8a_ 83 KLDTVVNAAGI 93 (251)
T ss_dssp CCCEEEECCCC
T ss_pred CCCEEEECCCC
Confidence 78999987643
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=81.68 E-value=1.9 Score=32.06 Aligned_cols=74 Identities=15% Similarity=0.223 Sum_probs=52.9
Q ss_pred CCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCC---------CCCCCee
Q 025475 50 SSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSF---------FEDESFD 117 (252)
Q Consensus 50 ~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~---------~~~~~~D 117 (252)
++++|-.|++.|. .+..+++.|. +|+.+|.+++.++...+.+. .+...+.+|+.+... ..-+..|
T Consensus 4 gK~alITGas~GIG~a~a~~l~~~G~-~Vv~~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~~~~v~~~~~~~~~~~g~iD 80 (243)
T d1q7ba_ 4 GKIALVTGASRGIGRAIAETLAARGA-KVIGTATSENGAQAISDYLG--ANGKGLMLNVTDPASIESVLEKIRAEFGEVD 80 (243)
T ss_dssp TCEEEESSCSSHHHHHHHHHHHHTTC-EEEEEESSHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHHHTCSCS
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHcCC-EEEEEeCCHHHHHHHHHHhC--CCCcEEEEEecCHHHhhhhhhhhhcccCCcc
Confidence 5678888887663 6667777787 89999999988877766653 256778889877431 1135799
Q ss_pred EEEeccchh
Q 025475 118 AVIDKGTLD 126 (252)
Q Consensus 118 ~v~~~~~l~ 126 (252)
+++.+....
T Consensus 81 ilVnnAg~~ 89 (243)
T d1q7ba_ 81 ILVNNAGIT 89 (243)
T ss_dssp EEEECCCCC
T ss_pred eehhhhhhc
Confidence 999775433
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.10 E-value=2.9 Score=32.06 Aligned_cols=76 Identities=8% Similarity=0.163 Sum_probs=53.1
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhc------CCCCCeEEEccccCCCCC--------
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYE------EIPQLKYLQMDVRDMSFF-------- 111 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~------~~~~v~~~~~d~~~~~~~-------- 111 (252)
.++++|-.|++.|. .+..+++.|. +|+.+|.+++.++.+.+.+. ...++..+.+|+.+....
T Consensus 11 ~gKvalITGas~GIG~aia~~la~~Ga-~Vvi~~r~~~~l~~~~~el~~~~~~~~~~~~~~~~~Dvs~~~~v~~~~~~~~ 89 (297)
T d1yxma1 11 QGQVAIVTGGATGIGKAIVKELLELGS-NVVIASRKLERLKSAADELQANLPPTKQARVIPIQCNIRNEEEVNNLVKSTL 89 (297)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHHHTSCTTCCCCEEEEECCTTCHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHHHhhhccccCceEEEEeccCCCHHHHHHHHHHHH
Confidence 46688888987763 5666777776 89999999887766655442 123678889999875321
Q ss_pred -CCCCeeEEEeccch
Q 025475 112 -EDESFDAVIDKGTL 125 (252)
Q Consensus 112 -~~~~~D~v~~~~~l 125 (252)
..+..|++|.+...
T Consensus 90 ~~~G~iDiLVnnAg~ 104 (297)
T d1yxma1 90 DTFGKINFLVNNGGG 104 (297)
T ss_dssp HHHSCCCEEEECCCC
T ss_pred HHhCCeEEEEeeccc
Confidence 12578999987543
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=80.90 E-value=2.6 Score=28.91 Aligned_cols=94 Identities=21% Similarity=0.274 Sum_probs=55.3
Q ss_pred cEEEEcccC-c-HhHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCCCCCCeeEEEeccchhhhc
Q 025475 52 RVLMVGCGN-A-LMSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFFEDESFDAVIDKGTLDSLM 129 (252)
Q Consensus 52 ~vLD~G~G~-G-~~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~~~l~~~~ 129 (252)
+|-=+|+|. | .++..|++.|+ +|++.|.++...+.++.... . ...+..+. ....|+|++.-
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~-~V~~~d~~~~~~~~~~~~~~-----~-~~~~~~e~----~~~~d~ii~~v------ 64 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGY-SLVVSDRNPEAIADVIAAGA-----E-TASTAKAI----AEQCDVIITML------ 64 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTC-EEEEECSCHHHHHHHHHTTC-----E-ECSSHHHH----HHHCSEEEECC------
T ss_pred EEEEEehhHHHHHHHHHHHHCCC-eEEEEeCCcchhHHHHHhhh-----h-hcccHHHH----HhCCCeEEEEc------
Confidence 455678874 3 46666777777 89999999998887765421 1 12222222 12467777532
Q ss_pred CCCCChhhHHHHH---HHHHHcccCCcEEEEEEcCChhh
Q 025475 130 CGTNAPISASQML---GEVSRLLKPGGIYMLITYGDPKA 165 (252)
Q Consensus 130 ~~~~~~~~~~~~l---~~~~~~L~~gG~l~i~~~~~~~~ 165 (252)
++++....++ +.+...+++|-.++-.....|..
T Consensus 65 ---~~~~~v~~v~~~~~~~~~~~~~g~iiid~sT~~p~~ 100 (161)
T d1vpda2 65 ---PNSPHVKEVALGENGIIEGAKPGTVLIDMSSIAPLA 100 (161)
T ss_dssp ---SSHHHHHHHHHSTTCHHHHCCTTCEEEECSCCCHHH
T ss_pred ---CCHHHHHHHHhCCcchhhccCCCCEEEECCCCCHHH
Confidence 2334455554 34666777776665555555543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=80.90 E-value=2.8 Score=30.94 Aligned_cols=109 Identities=14% Similarity=0.152 Sum_probs=69.0
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
.++++|-.|++.|. .+..+++.|. +|+.++.+.+.++...+.+. .++.++++|+.+.... .-++.
T Consensus 4 ~gK~alItGas~GIG~aia~~l~~~G~-~V~~~~r~~~~~~~~~~~~~--~~~~~~~~Dls~~~~i~~~~~~i~~~~g~i 80 (241)
T d2a4ka1 4 SGKTILVTGAASGIGRAALDLFAREGA-SLVAVDREERLLAEAVAALE--AEAIAVVADVSDPKAVEAVFAEALEEFGRL 80 (241)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHTCC--SSEEEEECCTTSHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC--CceEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 35688888988763 6666777776 99999999987776665543 3678889999875321 12578
Q ss_pred eEEEeccchhhh-cCCCCChhhH-----------HHHHHHHHHcccCCcEEEEEEc
Q 025475 117 DAVIDKGTLDSL-MCGTNAPISA-----------SQMLGEVSRLLKPGGIYMLITY 160 (252)
Q Consensus 117 D~v~~~~~l~~~-~~~~~~~~~~-----------~~~l~~~~~~L~~gG~l~i~~~ 160 (252)
|+++.+....+. .+..-+.++. ..+.+.+...++.++.+++...
T Consensus 81 DiLinnAg~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~k~~~~~~~~~~~i~~~ss 136 (241)
T d2a4ka1 81 HGVAHFAGVAHSALSWNLPLEAWEKVLRVNLTGSFLVARKAGEVLEEGGSLVLTGS 136 (241)
T ss_dssp CEEEEGGGGTTTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEECC
T ss_pred cEeccccccccccchhhhhccccccccccccccccccccccccccccccceeeccc
Confidence 999987655433 1111222332 2233455667777777666553
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=80.49 E-value=2.6 Score=31.85 Aligned_cols=74 Identities=18% Similarity=0.262 Sum_probs=52.9
Q ss_pred CCCcEEEEcccCcH---hHHHHHHcCCCcEEEEeCCHHHHHHHHHhhcCCCCCeEEEccccCCCCC---------CCCCe
Q 025475 49 TSSRVLMVGCGNAL---MSEDMVKDGYEDIVNIDISSVAIDMMKMKYEEIPQLKYLQMDVRDMSFF---------EDESF 116 (252)
Q Consensus 49 ~~~~vLD~G~G~G~---~~~~l~~~~~~~v~~vD~s~~~i~~a~~~~~~~~~v~~~~~d~~~~~~~---------~~~~~ 116 (252)
.++++|-.|++.|. .+..|++.|. +|+.+|.+++.++...+.+. .++..+.+|+.+.... .-+..
T Consensus 4 ~gK~alITGas~GIG~aia~~la~~Ga-~V~i~~r~~~~l~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~i 80 (276)
T d1bdba_ 4 KGEAVLITGGASGLGRALVDRFVAEGA-KVAVLDKSAERLAELETDHG--DNVLGIVGDVRSLEDQKQAASRCVARFGKI 80 (276)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTC-EEEEEESCHHHHHHHHHHHG--GGEEEEECCTTCHHHHHHHHHHHHHHHSCC
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHHcC--CCeeEEecccccHHHHHHHHHHHHHHhCCc
Confidence 36688889987663 6667777786 89999999988776666543 3578888998775311 12578
Q ss_pred eEEEeccch
Q 025475 117 DAVIDKGTL 125 (252)
Q Consensus 117 D~v~~~~~l 125 (252)
|+++.+..+
T Consensus 81 dilvnnAG~ 89 (276)
T d1bdba_ 81 DTLIPNAGI 89 (276)
T ss_dssp CEEECCCCC
T ss_pred ccccccccc
Confidence 999877543
|