Citrus Sinensis ID: 025480

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDYYFLGSFVSSNIILIIYL
cccccccccccccccccccccEEEEEcccccEEEEEEEccccEEEEcccEEEcccccccccccEEEEEccccccccccccccccccHHHHHHHHcccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccHHHHcHHHHHHHHHccccccEEEEcccHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccEEEEEEccccHHHHHHHHHHcccccEEEEccccccHHHHHHcc
cccccccccccccccEEccccEEEEEEccccEEEEEEEEcccEEEEEEEEEEcHHHccccccEEEEEEcccccccEEEEEcccccccccccccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcEEEEccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccHHHHHHHHHHccccccEEEccccccHHHHHHHcc
msqnnvqldpirnaqltwEGCSVlldindgdRLVFARltsgstlkignkncslqpligcpfgslfqvdngkegpnlsrvipsteddvqekedaqisgefrdnraivddnkaqclsgediDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKkqkkyapkvllrrpFARSICEAYFkknparigFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLggledyyflgsfvssniILIIYL
msqnnvqldpirnaQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSrvipsteddvqeKEDAqisgefrdnraivddnkaqclsgediDEMRRQGATGEEIVEALIansatfekktsfsqekyklkkqkkyapkvllrrpFARSICEAYfkknpariGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDYyflgsfvssniiliiyl
MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEkyklkkqkkyapkvllRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDYYFLGSFVSSNIILIIYL
**********IRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVD***************************************************************IVEALIAN********************KKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDYYFLGSFVSSNIILIIY*
****************TWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDV******************VDDNKAQCLSGEDI************I**ALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDYYFLGSFVSSN*ILIIYL
MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPST**********QISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDYYFLGSFVSSNIILIIYL
**********IRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPS****************************AQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDYYFLGSFVSSNIILIIYL
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MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDYYFLGSFVSSNIILIIYL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query252 2.2.26 [Sep-21-2011]
Q54UB1 521 tRNA (adenine(58)-N(1))-m yes no 0.833 0.403 0.408 7e-33
Q2T9V5 497 tRNA (adenine(58)-N(1))-m yes no 0.777 0.394 0.344 1e-23
Q9UJA5 497 tRNA (adenine(58)-N(1))-m yes no 0.777 0.394 0.348 5e-23
Q8CE96 497 tRNA (adenine(58)-N(1))-m yes no 0.781 0.396 0.345 2e-22
Q6CF35 487 tRNA (adenine(58)-N(1))-m yes no 0.734 0.379 0.321 2e-19
P0CS06 560 tRNA (adenine(58)-N(1))-m yes no 0.539 0.242 0.423 8e-19
P0CS07 560 tRNA (adenine(58)-N(1))-m N/A no 0.539 0.242 0.423 8e-19
Q9HGL4 462 tRNA (adenine(58)-N(1))-m yes no 0.829 0.452 0.292 8e-18
Q5A6Q4 453 tRNA (adenine(58)-N(1))-m N/A no 0.690 0.384 0.322 1e-17
Q2UJ66 578 tRNA (adenine(58)-N(1))-m yes no 0.694 0.302 0.336 6e-17
>sp|Q54UB1|TRM6_DICDI tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 OS=Dictyostelium discoideum GN=trmt6 PE=3 SV=1 Back     alignment and function desciption
 Score =  140 bits (354), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/213 (40%), Positives = 131/213 (61%), Gaps = 3/213 (1%)

Query: 19  EGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSR 78
           EG  V+LDIN+G++    ++  GS +KIG K   +  +IG  + S FQV N K    L R
Sbjct: 37  EGDHVILDINNGEKFSVIKVKLGSKVKIGKKQILINSIIGESYYSSFQVSNEKN--TLER 94

Query: 79  VIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIA 138
           +     DD +     +++    DNR +  +N AQ L+ EDI+EM+++G     I++ ++ 
Sbjct: 95  ITQKEIDD-RLNNLVELNQNDADNRNLDQNNTAQKLTQEDINEMKQKGTDSNTIIKTIVE 153

Query: 139 NSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLRVDMLSL 198
           NS +F+ KTSFSQ KY  KK KKY+  V + +P  +S+ EAY+KK+  +I  LR D    
Sbjct: 154 NSESFKTKTSFSQIKYLKKKIKKYSTIVKIIKPTLKSLTEAYYKKDSRKICGLRFDSFGQ 213

Query: 199 LLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231
           LL++GN+ ANS VLVV+   GL+TG++AER+ G
Sbjct: 214 LLTLGNIRANSQVLVVETCMGLVTGSIAERMNG 246
Substrate-binding subunit of tRNA (adenine-N(1)-)-methyltransferase, which catalyzes the formation of N(1)-methyladenine at position 58 (m1A58) in initiator methionyl-tRNA.
Dictyostelium discoideum (taxid: 44689)
>sp|Q2T9V5|TRM6_BOVIN tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Bos taurus GN=TRMT6 PE=2 SV=1 Back     alignment and function description
>sp|Q9UJA5|TRM6_HUMAN tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Homo sapiens GN=TRMT6 PE=1 SV=1 Back     alignment and function description
>sp|Q8CE96|TRM6_MOUSE tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Mus musculus GN=Trmt6 PE=1 SV=1 Back     alignment and function description
>sp|Q6CF35|TRM6_YARLI tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=TRM6 PE=3 SV=1 Back     alignment and function description
>sp|P0CS06|TRM6_CRYNJ tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=TRM6 PE=3 SV=1 Back     alignment and function description
>sp|P0CS07|TRM6_CRYNB tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=TRM6 PE=3 SV=1 Back     alignment and function description
>sp|Q9HGL4|TRM6_SCHPO tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gcd10 PE=3 SV=1 Back     alignment and function description
>sp|Q5A6Q4|TRM6_CANAL tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TRM6 PE=3 SV=1 Back     alignment and function description
>sp|Q2UJ66|TRM6_ASPOR tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=trm6 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
225458003 464 PREDICTED: tRNA (adenine-N(1)-)-methyltr 0.916 0.497 0.810 1e-106
255538914 514 translation initiation factor, putative 0.980 0.480 0.745 1e-101
224085855 434 predicted protein [Populus trichocarpa] 0.900 0.523 0.774 2e-96
449469893 448 PREDICTED: tRNA (adenine(58)-N(1))-methy 0.916 0.515 0.752 2e-90
224062013 387 predicted protein [Populus trichocarpa] 0.888 0.578 0.740 9e-89
357438383 457 tRNA (adenine-N(1)-)-methyltransferase n 0.944 0.520 0.661 1e-88
356562401 440 PREDICTED: tRNA (adenine-N(1)-)-methyltr 0.869 0.497 0.726 8e-88
356552066 423 PREDICTED: tRNA (adenine-N(1)-)-methyltr 0.809 0.482 0.724 2e-83
18406875 446 translation initiation factor eIF-3 subu 0.892 0.504 0.701 6e-78
297828295 446 eukaryotic initiation factor 3 gamma sub 0.892 0.504 0.692 7e-77
>gi|225458003|ref|XP_002280127.1| PREDICTED: tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 [Vitis vinifera] gi|302142647|emb|CBI19850.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 188/232 (81%), Positives = 211/232 (90%), Gaps = 1/232 (0%)

Query: 1   MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCP 60
           MSQN++Q D I+N ++TWEGCSVLLDINDGDRLVFARL++ +TLKIGNKNCSLQPLIGCP
Sbjct: 1   MSQNSLQNDSIQNPRVTWEGCSVLLDINDGDRLVFARLSASATLKIGNKNCSLQPLIGCP 60

Query: 61  FGSLFQVDNGKEGPNLSRVIPSTE-DDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDI 119
           FGSLFQVDNG  GP LSRV PS E +D+QE +D Q+  E +DNRAIVD+NKAQ L+GEDI
Sbjct: 61  FGSLFQVDNGPRGPYLSRVTPSAEGNDLQETQDCQLKDEPKDNRAIVDNNKAQSLTGEDI 120

Query: 120 DEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEA 179
           DEMRRQGATG+EIVEALI+NSAT+EKKTSFSQEKY+LKKQKKY+P+VLLRRPF RSICEA
Sbjct: 121 DEMRRQGATGDEIVEALISNSATYEKKTSFSQEKYRLKKQKKYSPRVLLRRPFCRSICEA 180

Query: 180 YFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231
           YFKK PARIGFLRVD LSLLLSM N+AA+SDVLVVDM GGLLTGAVAERLGG
Sbjct: 181 YFKKYPARIGFLRVDTLSLLLSMANIAAHSDVLVVDMVGGLLTGAVAERLGG 232

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255538914|ref|XP_002510522.1| translation initiation factor, putative [Ricinus communis] gi|223551223|gb|EEF52709.1| translation initiation factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224085855|ref|XP_002307715.1| predicted protein [Populus trichocarpa] gi|222857164|gb|EEE94711.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449469893|ref|XP_004152653.1| PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like [Cucumis sativus] gi|449521762|ref|XP_004167898.1| PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit trm6-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224062013|ref|XP_002300711.1| predicted protein [Populus trichocarpa] gi|222842437|gb|EEE79984.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357438383|ref|XP_003589467.1| tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 [Medicago truncatula] gi|355478515|gb|AES59718.1| tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356562401|ref|XP_003549460.1| PREDICTED: tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6-like [Glycine max] Back     alignment and taxonomy information
>gi|356552066|ref|XP_003544392.1| PREDICTED: tRNA (adenine-N(1)-)-methyltransferase non-catalytic subunit trm6-like [Glycine max] Back     alignment and taxonomy information
>gi|18406875|ref|NP_566054.1| translation initiation factor eIF-3 subunit P62 [Arabidopsis thaliana] gi|3386622|gb|AAC28552.1| expressed protein [Arabidopsis thaliana] gi|17473624|gb|AAL38275.1| unknown protein [Arabidopsis thaliana] gi|22136132|gb|AAM91144.1| unknown protein [Arabidopsis thaliana] gi|330255499|gb|AEC10593.1| translation initiation factor eIF-3 subunit P62 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297828295|ref|XP_002882030.1| eukaryotic initiation factor 3 gamma subunit family protein [Arabidopsis lyrata subsp. lyrata] gi|297327869|gb|EFH58289.1| eukaryotic initiation factor 3 gamma subunit family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
TAIR|locus:2043714 446 AT2G45730 [Arabidopsis thalian 0.892 0.504 0.636 8e-69
DICTYBASE|DDB_G0281175 521 trmt6 "tRNA(m1A58)-methyltrans 0.833 0.403 0.370 3.2e-31
ZFIN|ZDB-GENE-051120-141 464 trmt6 "tRNA methyltransferase 0.662 0.359 0.342 1.5e-22
UNIPROTKB|Q2T9V5 497 TRMT6 "tRNA (adenine(58)-N(1)) 0.670 0.340 0.344 2.5e-22
UNIPROTKB|F1P960 497 TRMT6 "Uncharacterized protein 0.670 0.340 0.35 2.5e-22
UNIPROTKB|F1SBM2 497 TRMT6 "Uncharacterized protein 0.674 0.342 0.335 4.2e-22
RGD|1308877 495 Trmt6 "tRNA methyltransferase 0.674 0.343 0.351 5.3e-22
UNIPROTKB|Q9UJA5 497 TRMT6 "tRNA (adenine(58)-N(1)) 0.670 0.340 0.35 7e-22
MGI|MGI:1914176 497 Trmt6 "tRNA methyltransferase 0.674 0.342 0.351 8.9e-22
UNIPROTKB|F1NF40 484 TRMT6 "Uncharacterized protein 0.674 0.351 0.357 2.9e-21
TAIR|locus:2043714 AT2G45730 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 698 (250.8 bits), Expect = 8.0e-69, P = 8.0e-69
 Identities = 147/231 (63%), Positives = 171/231 (74%)

Query:     1 MSQNNVQLDPIRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCP 60
             MS++    DP  N +   EGCSVLLDINDGDRLVFARL+SG+ LKIGNKN SL+PLIG P
Sbjct:    10 MSEDKKPQDP--NPRFACEGCSVLLDINDGDRLVFARLSSGAILKIGNKNYSLKPLIGAP 67

Query:    61 FGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDID 120
             FGSLFQV+ G++G  LSR++P      QE     +  + RDNR IVD+N+AQ L+GE+I+
Sbjct:    68 FGSLFQVETGEDGSFLSRILPIK----QESNSNNVMDDSRDNREIVDNNEAQNLTGEEIE 123

Query:   121 EMRRQGATGEEIVEALIANSATFEKKTSFSQEXXXXXXXXXXXXXXXXRRPFARSICEAY 180
              MRR+GA G+EI+EALIANS TF+KK   SQE                RRPFARSICEAY
Sbjct:   124 AMRREGAKGDEIIEALIANSKTFDKKFQLSQEKYKLKKQKKYAPKLLLRRPFARSICEAY 183

Query:   181 FKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231
             FKK PARIGFLRVD LSLLL+M NV A SDVLVVDM GGL+TGAVAERLGG
Sbjct:   184 FKKYPARIGFLRVDALSLLLTMANVTAYSDVLVVDMVGGLVTGAVAERLGG 234
GO:0003743 "translation initiation factor activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0006446 "regulation of translational initiation" evidence=ISS
GO:0000278 "mitotic cell cycle" evidence=RCA
GO:0006396 "RNA processing" evidence=RCA
GO:0006606 "protein import into nucleus" evidence=RCA
GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA
DICTYBASE|DDB_G0281175 trmt6 "tRNA(m1A58)-methyltransferase subunit" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-051120-141 trmt6 "tRNA methyltransferase 6 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q2T9V5 TRMT6 "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1P960 TRMT6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F1SBM2 TRMT6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
RGD|1308877 Trmt6 "tRNA methyltransferase 6 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UJA5 TRMT6 "tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1914176 Trmt6 "tRNA methyltransferase 6" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1NF40 TRMT6 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
pfam04189299 pfam04189, Gcd10p, Gcd10p family 2e-69
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family Back     alignment and domain information 
 Score =  215 bits (549), Expect = 2e-69
 Identities = 86/221 (38%), Positives = 125/221 (56%), Gaps = 9/221 (4%)

Query: 19  EGCSVLLDINDGDRLVFARLTSGSTLKIGN-KNCSLQPLIGCPFGSLFQVDN-------G 70
           EG  V+L     +RL   +L     + +G   +     +IG P+G+ F++D        G
Sbjct: 6   EGDHVIL-RLPSERLKIVKLQPNGKVSLGKFGSFPANDIIGLPYGTTFEIDEDKELRVIG 64

Query: 71  KEGPNLSRVIPSTEDDVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGE 130
           +    L     S E D  + E  +IS   RDNR IVDD  +Q L+ E+I+ ++++GA+GE
Sbjct: 65  RVEVLLQLYPDSDETDSDDPETLEISESSRDNRNIVDDGSSQKLTMEEIEALKKEGASGE 124

Query: 131 EIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGF 190
           EI+E L+ NS TF  KT+FSQEKY  +K+KKY  +  + RP    + E Y +K+P +I  
Sbjct: 125 EIIEKLVENSETFHTKTAFSQEKYLKRKKKKYLKRFTVLRPSISLLAEYYIEKDPQKILD 184

Query: 191 LRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGG 231
           LR D L L+L++ NV      LVVD  GGLL  A+ ER+GG
Sbjct: 185 LRFDTLGLILTLANVRPGGRYLVVDETGGLLVAAMLERMGG 225

eIF-3 is a multi-subunit complex that stimulates translation initiation in vitro at several different steps. This family corresponds to the gamma subunit if eIF3. The Yeast protein Gcd10p has also been shown to be part of a complex with the methyltransferase Gcd14p that is involved in modifying tRNA. Length = 299

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 252
PF04189299 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 i 100.0
KOG1416 475 consensus tRNA(1-methyladenosine) methyltransferas 100.0
COG2519 256 GCD14 tRNA(1-methyladenosine) methyltransferase an 99.67
KOG2915 314 consensus tRNA(1-methyladenosine) methyltransferas 99.36
PF08704 247 GCD14: tRNA methyltransferase complex GCD14 subuni 98.69
PF1480154 GCD14_N: tRNA methyltransferase complex GCD14 subu 98.17
PF01135209 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl 96.87
KOG1661 237 consensus Protein-L-isoaspartate(D-aspartate) O-me 95.38
TIGR00080215 pimt protein-L-isoaspartate(D-aspartate) O-methylt 94.51
PRK13942212 protein-L-isoaspartate O-methyltransferase; Provis 93.93
COG2518209 Pcm Protein-L-isoaspartate carboxylmethyltransfera 93.12
PRK04266 226 fibrillarin; Provisional 92.98
PRK13944205 protein-L-isoaspartate O-methyltransferase; Provis 92.74
PRK00312212 pcm protein-L-isoaspartate O-methyltransferase; Re 92.5
PRK13943 322 protein-L-isoaspartate O-methyltransferase; Provis 91.16
TIGR01848107 PHA_reg_PhaR polyhydroxyalkanoate synthesis repres 87.98
PRK00377 198 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; 87.19
TIGR00438 188 rrmJ cell division protein FtsJ. 87.01
PLN02476 278 O-methyltransferase 85.5
KOG1712183 consensus Adenine phosphoribosyl transferases [Nuc 83.01
TIGR02469124 CbiT precorrin-6Y C5,15-methyltransferase (decarbo 82.48
PF0787964 PHB_acc_N: PHB/PHA accumulation regulator DNA-bind 81.92
TIGR02752 231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 81.05
>PF04189 Gcd10p: Gcd10p family; InterPro: IPR007316 eIF-3 is a multisubunit complex that stimulates translation initiation in vitro at several different steps Back     alignment and domain information 
Probab=100.00  E-value=3.9e-79  Score=561.61  Aligned_cols=235  Identities=41%  Similarity=0.648  Sum_probs=209.7

Q ss_pred             CCCccCCCEEEEEeCCCCeEEEEEEecCCEEEEce-eeeecCcccCCCCCcEEEEeCCCCCCCccccCCCCc---c----
Q 025480           14 AQLTWEGCSVLLDINDGDRLVFARLTSGSTLKIGN-KNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTE---D----   85 (252)
Q Consensus        14 ~~~I~eGd~Vll~~~~g~~~~~v~l~~~~~i~lgK-~~f~~~~lIG~pyG~t~ei~~~~~~~~~~~~~~~~~---~----   85 (252)
                      ++.|++||||+|++|++ .+++++|+|+++|+||| ++|++++|||+|||+|||+.+++....++......+   +    
T Consensus         1 h~~I~~gd~Vil~~~~~-~~k~v~l~~~~~i~lGK~~sf~~~~lIG~pyg~tfEi~~~~~l~~v~~~~~~~~~~~~~~~~   79 (299)
T PF04189_consen    1 HSIIQEGDYVILRLPSG-NMKIVKLKPNKTISLGKFGSFPLNDLIGRPYGSTFEIQDDKKLRVVPRNELHAEKDPDDDEE   79 (299)
T ss_pred             CCCcCCCCEEEEEcCCC-cEEEEEECCCCEEEecCCCcccHHHhcCCCCCcEEEEeCCCccccccccccccccccccccc
Confidence            35799999999999964 67799999999999999 569999999999999999998884332221110000   0    


Q ss_pred             hhhhhhhhhccccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCc
Q 025480           86 DVQEKEDAQISGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPK  165 (252)
Q Consensus        86 ~~~~~~~~~~~~~~~dNr~i~Dd~~~QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~  165 (252)
                      .....+..+..+.++|||+|+|++++|+||+|||++||++|++|+|||++|++||+||++||+||||||+|||+|||+++
T Consensus        80 ~~~~~~~~~~~~~~~dNr~i~D~~~~QkLt~eeIe~LK~~g~sg~eII~kLiens~tF~~KT~FSqeKYlkrK~kKy~~~  159 (299)
T PF04189_consen   80 EGDDSEELENEESSRDNRNIIDDNSSQKLTQEEIEELKKEGVSGEEIIEKLIENSSTFDKKTEFSQEKYLKRKQKKYLKR  159 (299)
T ss_pred             ccccccccccccccccccccccccccccCCHHHHHHHHHcCCCHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhhhhce
Confidence            00012334567789999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCChHHHHHHHhhcCcchhcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE--EecCCCCC
Q 025480          166 VLLRRPFARSICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY--YFLGSFVS  243 (252)
Q Consensus       166 ~~vl~Pt~~~l~e~y~~k~P~Ki~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i--~~~g~~p~  243 (252)
                      |+|++||+++||++||.|+|.||++||+|+|||||+||||++|+||||||+|+|||+|||||||||.|+|  +|.|++||
T Consensus       160 ftv~~pt~~~l~e~y~~k~p~Ki~~lR~d~la~il~~aNV~~g~r~Lv~D~~~GLv~aav~eRmgg~G~i~~~~~~~~~p  239 (299)
T PF04189_consen  160 FTVLRPTIRNLCEYYFEKDPQKIMDLRFDTLAQILSLANVHAGGRVLVVDDCGGLVVAAVAERMGGSGNIITLHHGNSPP  239 (299)
T ss_pred             EEEeCCCHHHHHHHHhhcChHHHhccCHHHHHHHHHhcCCCCCCeEEEEeCCCChHHHHHHHHhCCCceEEEEeeCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999  99999999


Q ss_pred             ccceee
Q 025480          244 SNIILI  249 (252)
Q Consensus       244 ~~~~l~  249 (252)
                      ++++|.
T Consensus       240 ~~~~l~  245 (299)
T PF04189_consen  240 NLDILK  245 (299)
T ss_pred             CHHHHH
Confidence            998764

This family corresponds to the gamma subunit of eIF3 [, ].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation
>KOG1416 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD10 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] Back     alignment and domain information
>PF14801 GCD14_N: tRNA methyltransferase complex GCD14 subunit N-term; PDB: 1I9G_A Back     alignment and domain information
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 Back     alignment and domain information
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase Back     alignment and domain information
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional Back     alignment and domain information
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK04266 fibrillarin; Provisional Back     alignment and domain information
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional Back     alignment and domain information
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed Back     alignment and domain information
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional Back     alignment and domain information
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR Back     alignment and domain information
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional Back     alignment and domain information
>TIGR00438 rrmJ cell division protein FtsJ Back     alignment and domain information
>PLN02476 O-methyltransferase Back     alignment and domain information
>KOG1712 consensus Adenine phosphoribosyl transferases [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit Back     alignment and domain information
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 46.0 bits (108), Expect = 7e-06
 Identities = 30/186 (16%), Positives = 52/186 (27%), Gaps = 38/186 (20%)

Query: 44  LKIGNKNCS------LQPLIGCPFGSLFQVD-NGKEGPNLSRVIPSTEDDVQEKEDAQIS 96
           L + N N        LQ L       L+Q+D N     + S  I      +Q +    + 
Sbjct: 187 LNLKNCNSPETVLEMLQKL-------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLK 239

Query: 97  GEFRDNRA--IVDD--NKA-------QC---LSGEDIDEMRRQGATGEEIVEALIANSAT 142
            +        ++ +  N          C   L+           A     +  L  +S T
Sbjct: 240 SK-PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMT 297

Query: 143 FEKKTS---FSQEKYKLKKQKKYAPKVLLRRPFARSICEAYFKKNPARIGFLR---VDML 196
                        KY   + +    +VL   P   SI     +   A     +    D L
Sbjct: 298 LTPDEVKSLLL--KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355

Query: 197 SLLLSM 202
           + ++  
Sbjct: 356 TTIIES 361

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
3mb5_A 255 SAM-dependent methyltransferase; RNA methyltransfe 99.31
1i9g_A 280 Hypothetical protein RV2118C; mtase, adoMet, cryst 99.26
1o54_A 277 SAM-dependent O-methyltransferase; TM0748, structu 99.16
2pwy_A 258 TRNA (adenine-N(1)-)-methyltransferase; mtase, ado 99.01
2b25_A 336 Hypothetical protein; structural genomics, methyl 98.86
2yvl_A 248 TRMI protein, hypothetical protein; tRNA, methyltr 98.45
1yb2_A 275 Hypothetical protein TA0852; structural genomics, 95.53
4df3_A 233 Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; 92.16
3eey_A 197 Putative rRNA methylase; rRNA methylation, S-adeno 90.23
2yxe_A215 Protein-L-isoaspartate O-methyltransferase; rossma 90.22
3id6_C 232 Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; 89.83
1i1n_A 226 Protein-L-isoaspartate O-methyltransferase; S-aden 88.74
2pbf_A227 Protein-L-isoaspartate O-methyltransferase beta-A 88.61
1nkv_A 256 Hypothetical protein YJHP; structural genomics, PS 87.1
3e05_A 204 Precorrin-6Y C5,15-methyltransferase (decarboxyla; 86.55
3tr6_A 225 O-methyltransferase; cellular processes; HET: SAH; 86.53
1jg1_A 235 PIMT;, protein-L-isoaspartate O-methyltransferase; 86.17
2avd_A 229 Catechol-O-methyltransferase; structural genomics, 85.66
2hnk_A 239 SAM-dependent O-methyltransferase; modified rossma 85.03
2bm8_A 236 Cephalosporin hydroxylase CMCI; cephamycin biosynt 84.55
1g8a_A 227 Fibrillarin-like PRE-rRNA processing protein; rRNA 84.21
1r18_A227 Protein-L-isoaspartate(D-aspartate)-O-methyltrans; 84.0
3r3h_A 242 O-methyltransferase, SAM-dependent; structural gen 84.0
1nt2_A 210 Fibrillarin-like PRE-rRNA processing protein; adeM 83.89
2ipx_A 233 RRNA 2'-O-methyltransferase fibrillarin; FBL, stru 83.75
1fbn_A 230 MJ fibrillarin homologue; MJ proteins, ribosomal R 83.63
3duw_A 223 OMT, O-methyltransferase, putative; alternating of 83.41
3lbf_A210 Protein-L-isoaspartate O-methyltransferase; modifi 83.36
3c3y_A 237 Pfomt, O-methyltransferase; plant secondary metabo 81.47
3tfw_A 248 Putative O-methyltransferase; PSI-biology, nysgrc, 81.26
1dl5_A 317 Protein-L-isoaspartate O-methyltransferase; isoasp 81.16
1ej0_A 180 FTSJ; methyltransferase, adoMet, adenosyl methioni 80.45
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* Back     alignment and structure
Probab=99.31  E-value=5.2e-11  Score=102.65  Aligned_cols=121  Identities=17%  Similarity=0.233  Sum_probs=101.4

Q ss_pred             CccCCCEEEEEeCCCCeEEEEEEecCCEEEEceeeeecCcccCCCCCcEEEEeCCCCCCCccccCCCCcchhhhhhhhhc
Q 025480           16 LTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQI   95 (252)
Q Consensus        16 ~I~eGd~Vll~~~~g~~~~~v~l~~~~~i~lgK~~f~~~~lIG~pyG~t~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (252)
                      ||++||.|++..+++ +.+.+++.+| .+...+|.|.++++||++||..+....+.                        
T Consensus         1 ~~~~Gd~v~~~~~~~-~~~~~~~~~~-~~~~~~g~~~~~~~ig~~~g~~i~~~~g~------------------------   54 (255)
T 3mb5_A            1 MIREGDKVVLVDPRG-KRYLITVSKR-DFHTDLGILKLEEIIGRNFGEAIKSHKGH------------------------   54 (255)
T ss_dssp             CCCTTCEEEEECTTS-CEEEEECCSS-EEEETTEEEEGGGGTTCCTTCEEECTTCC------------------------
T ss_pred             CCCCCCEEEEEECCC-cEEEEEecCC-eEecCCEEEEHHHhcCCCCCcEEEECCCc------------------------
Confidence            689999999999875 6779999998 88888899999999999999988754332                        


Q ss_pred             cccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHH
Q 025480           96 SGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARS  175 (252)
Q Consensus        96 ~~~~~dNr~i~Dd~~~QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~Pt~~~  175 (252)
                                                                                           .+.+++|+...
T Consensus        55 ---------------------------------------------------------------------~~~~~~p~~~~   65 (255)
T 3mb5_A           55 ---------------------------------------------------------------------EFKILRPRIVD   65 (255)
T ss_dssp             ---------------------------------------------------------------------EEEEECCCHHH
T ss_pred             ---------------------------------------------------------------------EEEEeCCCHHH
Confidence                                                                                 25678888776


Q ss_pred             HHHHHhhcCcchhcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE
Q 025480          176 ICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY  235 (252)
Q Consensus       176 l~e~y~~k~P~Ki~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i  235 (252)
                      .+. .+.+   ....+.++..++|+.++++.+|.+||.++.++|.++.++++++|+.+++
T Consensus        66 ~~~-~~~~---~~~~~~~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v  121 (255)
T 3mb5_A           66 YLD-KMKR---GPQIVHPKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRV  121 (255)
T ss_dssp             HHH-HSCC---CSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEE
T ss_pred             HHh-hCcc---ccccccHhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEE
Confidence            665 3333   3345778889999999999999999999999999999999999888888
>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 Back     alignment and structure
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 Back     alignment and structure
>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} Back     alignment and structure
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 Back     alignment and structure
>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} Back     alignment and structure
>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 Back     alignment and structure
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} Back     alignment and structure
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Back     alignment and structure
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} Back     alignment and structure
>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* Back     alignment and structure
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* Back     alignment and structure
>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 Back     alignment and structure
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 Back     alignment and structure
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* Back     alignment and structure
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 Back     alignment and structure
>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} Back     alignment and structure
>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* Back     alignment and structure
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A Back     alignment and structure
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 Back     alignment and structure
>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} Back     alignment and structure
>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 Back     alignment and structure
>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} Back     alignment and structure
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A Back     alignment and structure
>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* Back     alignment and structure
>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} Back     alignment and structure
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} Back     alignment and structure
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} Back     alignment and structure
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 Back     alignment and structure
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 252
d1w7ja158 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal d 0.004
>d1w7ja1 b.34.3.1 (A:5-62) Myosin S1 fragment, N-terminal domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 58 Back     information, alignment and structure

class: All beta proteins
fold: SH3-like barrel
superfamily: Myosin S1 fragment, N-terminal domain
family: Myosin S1 fragment, N-terminal domain
domain: Myosin S1 fragment, N-terminal domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score = 32.4 bits (74), Expect = 0.004
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 11 IRNAQLTWEGCSVLLDINDGDRLVFARLTSGSTLKI--GNKNCSLQPL 56
          I + +  W+   +L D   GD+++  RL  G  L+     K   L PL
Sbjct: 11 IPDPEEVWKSAELLKDYKPGDKVLQLRLEEGKDLEYCLDPKTKELPPL 58

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
d1i9ga_ 264 Probable methyltransferase Rv2118c {Mycobacterium 99.68
d1o54a_ 266 Hypothetical protein TM0748 {Thermotoga maritima [ 99.66
d2b25a1 324 Hypothetical protein FLJ20628 {Human (Homo sapiens 99.6
d1yb2a1 250 Hypothetical protein Ta0852 {Thermoplasma acidophi 98.54
d1dl5a1213 Protein-L-isoaspartyl O-methyltransferase {Thermot 96.83
d1i1na_ 224 Protein-L-isoaspartyl O-methyltransferase {Human ( 96.08
d1jg1a_215 Protein-L-isoaspartyl O-methyltransferase {Archaeo 95.46
d1vbfa_ 224 Protein-L-isoaspartyl O-methyltransferase {Sulfolo 95.02
d1r18a_223 Protein-L-isoaspartyl O-methyltransferase {Fruit f 94.84
d1xxla_ 234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 91.07
d1g8aa_ 227 Fibrillarin homologue {Archaeon Pyrococcus horikos 90.51
d1nkva_ 245 Hypothetical Protein YjhP {Escherichia coli [TaxId 89.51
d1l3ia_ 186 Precorrin-6Y methyltransferase (CbiT) {Archaeon Me 89.36
d1okga1156 3-mercaptopyruvate sulfurtransferase {Leishmania m 84.63
d1nt2a_ 209 Fibrillarin homologue {Archaeon Archaeoglobus fulg 81.97
d1u2za_ 406 Catalytic, N-terminal domain of histone methyltran 81.88
d1vl5a_ 231 Hypothetical protein BH2331 {Bacillus halodurans [ 80.96
d1qama_ 235 rRNA adenine dimethylase {Bacillus subtilis, Ermc' 80.28
>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.68  E-value=8.6e-17  Score=142.71  Aligned_cols=126  Identities=19%  Similarity=0.219  Sum_probs=104.3

Q ss_pred             CccCCCEEEEEeCCCCeEEEEEEecCCEEEEceeeeecCcccCCCCCcEEEEeCCCCCCCccccCCCCcchhhhhhhhhc
Q 025480           16 LTWEGCSVLLDINDGDRLVFARLTSGSTLKIGNKNCSLQPLIGCPFGSLFQVDNGKEGPNLSRVIPSTEDDVQEKEDAQI   95 (252)
Q Consensus        16 ~I~eGd~Vll~~~~g~~~~~v~l~~~~~i~lgK~~f~~~~lIG~pyG~t~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~   95 (252)
                      .+++||+|+|....| +.+++++++|+.++...|.|+++++||++||+.++...|.                        
T Consensus         3 ~f~~Gd~Vll~~~~~-~~~~~~l~~g~~~~t~~G~~~h~~iiGk~~G~~v~t~~g~------------------------   57 (264)
T d1i9ga_           3 PFSIGERVQLTDAKG-RRYTMSLTPGAEFHTHRGSIAHDAVIGLEQGSVVKSSNGA------------------------   57 (264)
T ss_dssp             SCCTTCEEEEEETTC-CEEEEECCTTCEEEETTEEEEHHHHTTCCTTEEEECSSCC------------------------
T ss_pred             CCCCCCEEEEEECCC-CEEEEEECCCCEEEcCCeeEeHHHhcCCCCCeEEEeCCCC------------------------
Confidence            489999999998876 5669999999999999999999999999999988754333                        


Q ss_pred             cccccCccccccCcccccCCHHHHHHHHHcCCChHHHHHHHHhcccccccchhhcHHHHHHHhhhccCCcEEEeCCChHH
Q 025480           96 SGEFRDNRAIVDDNKAQCLSGEDIDEMRRQGATGEEIVEALIANSATFEKKTSFSQEKYKLKKQKKYAPKVLLRRPFARS  175 (252)
Q Consensus        96 ~~~~~dNr~i~Dd~~~QkLs~eeI~eLK~~g~~g~eII~~LvenS~tF~~KT~FSqeKYlkkK~kKyl~~~~vl~Pt~~~  175 (252)
                                                                                           .|.+++||+.+
T Consensus        58 ---------------------------------------------------------------------~~~v~~pt~~~   68 (264)
T d1i9ga_          58 ---------------------------------------------------------------------LFLVLRPLLVD   68 (264)
T ss_dssp             ---------------------------------------------------------------------EEEEECCCHHH
T ss_pred             ---------------------------------------------------------------------EEEEeCCCHHH
Confidence                                                                                 25677888877


Q ss_pred             HHHHHhhcCcchhcCCCHHHHHHHHhhcCCCCCCeEEEEeCCCcHHHHHHHHHhCCCceE-EecC
Q 025480          176 ICEAYFKKNPARIGFLRVDMLSLLLSMGNVAANSDVLVVDMAGGLLTGAVAERLGGLEDY-YFLG  239 (252)
Q Consensus       176 l~e~y~~k~P~Ki~~lR~DtLa~iL~~anV~~g~rvLv~d~~~Gll~aAvleRmgg~G~i-~~~g  239 (252)
                      .... +++   +..-+=+-..|+|+.+++|+||+|||.+++++|-+|.++|.++|.+|+| .++=
T Consensus        69 ~~~~-~~r---~tqiiypkD~s~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~  129 (264)
T d1i9ga_          69 YVMS-MPR---GPQVIYPKDAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQ  129 (264)
T ss_dssp             HHTT-SCS---CSCCCCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECS
T ss_pred             HHhh-ccC---CccccchHHHHHHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecC
Confidence            6542 222   2223335669999999999999999999999999999999999999999 6653
>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} Back     information, alignment and structure
>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Back     information, alignment and structure
>d1okga1 c.46.1.2 (A:7-162) 3-mercaptopyruvate sulfurtransferase {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} Back     information, alignment and structure