Citrus Sinensis ID: 025481

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
MRGRRCHSTRHPDMSGSGSGSGLESEAESETMRCISCREEYGTRDAGTCKECYEEASETEEELKREIEDLKAKVAFLRFWSPLDHHHHHHSSRSHCGPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVNTAALKDSPMKQ
ccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHcEEcccccccHHHHccHHccccccccccEEEEccccccccccccccHHHHHHHHcccHHHHHHccccccccccccEEEccccHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHccccccccccccccc
cccccccccccHHHHccccccccccccccHcEEEcccHHHccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHcccccccccccccEEEEEEcccccccccccccHHHHHHHHcccHHHHHHHcccHHHHcccEEEEccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHHccccHHHHHHHcHHHHHHHHHHHHHHcccccccccccccc
mrgrrchstrhpdmsgsgsgsgleseaeseTMRCIScreeygtrdagtckECYEEASETEEELKREIEDLKAKVAFLrfwspldhhhhhhssrshcgpcyTDVVLVAasesgpagpavpvpahkavlvSRSPVFKAMLDNemeesrsgtikisDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQvntaalkdspmkq
mrgrrchstrhpdmsgsgsgsgleseAESETMRCISCreeygtrdagtcKECYEEASETEEELKREIEDLKAKVAFLRFWSPLDHHHHHHSSRSHCGPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDnemeesrsgtikisdVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEyrelvekdprLVVEIYEAYlskqvntaalkdspmkq
MRGRRCHSTRHPDMsgsgsgsgleseaeseTMRCISCREEYGTRDAGTCKecyeeaseteeelkreIEDLKAKVAFLRFWSPLDhhhhhhssrshCGPCYTDVVLVAASESGpagpavpvpahkavlvSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVNTAALKDSPMKQ
*********************************CISCREEYGTRDAGTCKECY***************DLKAKVAFLRFW***************CGPCYTDVVLVAA***************KAVLVS***VF**************TIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQV************
**************************************************************************AFLRFWS*************HCGPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLS***************
********************************RCISCREEYGTRDAGTCKEC************REIEDLKAKVAFLRFWSPLD************GPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVNTA*********
****************************SETMRCISCREEYGTRDAGTCKECYEEASETEEELKREIEDLKAKVAFLRFWSPLDHHHHHHSSRSHCGPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVN***********
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MRGRRCHSTRHPDMSGSGSGSGLESEAESETMRCISCREEYGTRDAGTxxxxxxxxxxxxxxxxxxxxxxxxxVAFLRFWSPLDHHHHHHSSRSHCGPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVNTAALKDSPMKQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query252 2.2.26 [Sep-21-2011]
Q6DBN1243 BTB/POZ domain-containing yes no 0.809 0.839 0.674 3e-80
P34568451 BTB and MATH domain-conta yes no 0.599 0.334 0.262 4e-13
Q0IHH9374 Speckle-type POZ protein N/A no 0.468 0.315 0.304 6e-12
Q6P8B3374 Speckle-type POZ protein yes no 0.468 0.315 0.304 6e-12
Q7ZX06374 Speckle-type POZ protein N/A no 0.468 0.315 0.304 6e-12
Q717B2364 TD and POZ domain-contain yes no 0.535 0.370 0.268 6e-12
Q7T330374 Speckle-type POZ protein yes no 0.468 0.315 0.297 9e-12
Q6YCH2370 TD and POZ domain-contain yes no 0.575 0.391 0.276 1e-11
Q5NVK7374 Speckle-type POZ protein yes no 0.468 0.315 0.297 3e-11
Q6ZWS8374 Speckle-type POZ protein no no 0.468 0.315 0.297 3e-11
>sp|Q6DBN1|Y4845_ARATH BTB/POZ domain-containing protein At4g08455 OS=Arabidopsis thaliana GN=At4g08455 PE=1 SV=1 Back     alignment and function desciption
 Score =  298 bits (762), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 164/243 (67%), Positives = 179/243 (73%), Gaps = 39/243 (16%)

Query: 32  MRCISCREEYGTRDAGTCKECYEEASETEEELKREIEDLKAKVAFLRFWSPLDHHHHHHS 91
           MRCISCREEY  R+AGTCKECY EA ETEEELKREI+DLKAKVAFLR  S LDH     +
Sbjct: 1   MRCISCREEYLPRNAGTCKECYVEAGETEEELKREIDDLKAKVAFLRLSSSLDHGTSS-T 59

Query: 92  SRSHCGPCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIK 151
           SRS     +TDVVL+A SE     P  P+PAHK+VLVSRSPVFKAML+NEMEES SGTIK
Sbjct: 60  SRS-----FTDVVLIA-SEDNAGSP--PIPAHKSVLVSRSPVFKAMLENEMEESLSGTIK 111

Query: 152 ISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKY---------------------- 189
           ISDVSYDALR FV YLYTAEACLDEQ+ACDLL ++EKY                      
Sbjct: 112 ISDVSYDALRTFVYYLYTAEACLDEQMACDLLVMSEKYQVKHLKSYCERFLVTKLSPDNS 171

Query: 190 --------QHNAKQLLEAALSLITDNMDKLTKCEEYRELVEKDPRLVVEIYEAYLSKQVN 241
                   QHNAK +L+AALS I +NMDKLTK EEY ELVEKDPRL+VEIYEAYLSKQVN
Sbjct: 172 LMTYAFAHQHNAKHVLDAALSQIVENMDKLTKREEYMELVEKDPRLIVEIYEAYLSKQVN 231

Query: 242 TAA 244
           TAA
Sbjct: 232 TAA 234
May act as a substrate-specific adapter of an E3 ubiquitin-protein ligase complex (CUL3-RBX1-BTB) which mediates the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)
>sp|P34568|BAT43_CAEEL BTB and MATH domain-containing protein 43 OS=Caenorhabditis elegans GN=bath-43 PE=3 SV=2 Back     alignment and function description
>sp|Q0IHH9|SPOPB_XENLA Speckle-type POZ protein B OS=Xenopus laevis GN=spop-b PE=2 SV=1 Back     alignment and function description
>sp|Q6P8B3|SPOP_XENTR Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1 Back     alignment and function description
>sp|Q7ZX06|SPOPA_XENLA Speckle-type POZ protein A OS=Xenopus laevis GN=spop-a PE=2 SV=1 Back     alignment and function description
>sp|Q717B2|TDPZ2_MOUSE TD and POZ domain-containing protein 2 OS=Mus musculus GN=Tdpoz2 PE=2 SV=2 Back     alignment and function description
>sp|Q7T330|SPOP_DANRE Speckle-type POZ protein OS=Danio rerio GN=spop PE=2 SV=1 Back     alignment and function description
>sp|Q6YCH2|TDPZ4_MOUSE TD and POZ domain-containing protein 4 OS=Mus musculus GN=Tdpoz4 PE=2 SV=2 Back     alignment and function description
>sp|Q5NVK7|SPOP_PONAB Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1 Back     alignment and function description
>sp|Q6ZWS8|SPOP_MOUSE Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
255558542267 protein binding protein, putative [Ricin 0.940 0.887 0.702 3e-97
224062980273 predicted protein [Populus trichocarpa] 0.940 0.868 0.688 2e-96
449444076267 PREDICTED: BTB/POZ domain-containing pro 0.940 0.887 0.644 5e-91
224085012251 predicted protein [Populus trichocarpa] 0.849 0.852 0.742 3e-89
42570060243 BTB/POZ domain-containing protein [Arabi 0.809 0.839 0.674 2e-78
297809027243 BTB/POZ domain-containing protein [Arabi 0.809 0.839 0.662 3e-77
3377822331 contains similarity to Caenorhabditis el 0.873 0.664 0.604 1e-76
388521233253 unknown [Medicago truncatula] 0.785 0.782 0.594 8e-71
302141753241 unnamed protein product [Vitis vinifera] 0.833 0.871 0.684 7e-69
225459685264 PREDICTED: BTB/POZ domain-containing pro 0.833 0.795 0.684 9e-69
>gi|255558542|ref|XP_002520296.1| protein binding protein, putative [Ricinus communis] gi|223540515|gb|EEF42082.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  360 bits (924), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 196/279 (70%), Positives = 215/279 (77%), Gaps = 42/279 (15%)

Query: 1   MRGRRCHSTRHPDMSGSGSGSGLESEAESETMRCISCREEYGTRDAGTCKECYEEASETE 60
           MRG RC  +R        S +  E+++E+ETMRCISC+EEYGT DAGTCKECYEEASETE
Sbjct: 1   MRGHRCERSR--------SETDTETDSETETMRCISCKEEYGTIDAGTCKECYEEASETE 52

Query: 61  EELKREIEDLKAKVAFLRFWSPLDHHHHHHSSRSHCGPCYTDVVLVAASESGPAGPAVPV 120
           EELKREIEDLKAKVAFLRFWSPLDHHH + S+    GPC+TDVVL+A+S+ GP G  VPV
Sbjct: 53  EELKREIEDLKAKVAFLRFWSPLDHHHSNRST----GPCFTDVVLIASSDDGPTGSPVPV 108

Query: 121 PAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLAC 180
           PAHKAVLVSRSPVFKAML+NEMEES SGTIKISDVSYDALR F+NYLYTAEACLDEQ+AC
Sbjct: 109 PAHKAVLVSRSPVFKAMLENEMEESHSGTIKISDVSYDALRMFINYLYTAEACLDEQMAC 168

Query: 181 DLLELAEKYQ------------------------------HNAKQLLEAALSLITDNMDK 210
           DLL LAEKYQ                              HNAK + EAALSLITDNMDK
Sbjct: 169 DLLVLAEKYQVKHLKAYCEKFLVSKLNWNNSVPSYAFAHLHNAKHMTEAALSLITDNMDK 228

Query: 211 LTKCEEYRELVEKDPRLVVEIYEAYLSKQVNTAALKDSP 249
           LTK EEY+ELVEKDPRLVVEIYEAYLSKQVNTAA +  P
Sbjct: 229 LTKREEYKELVEKDPRLVVEIYEAYLSKQVNTAAPRILP 267

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224062980|ref|XP_002300959.1| predicted protein [Populus trichocarpa] gi|222842685|gb|EEE80232.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449444076|ref|XP_004139801.1| PREDICTED: BTB/POZ domain-containing protein At4g08455-like [Cucumis sativus] gi|449507436|ref|XP_004163032.1| PREDICTED: BTB/POZ domain-containing protein At4g08455-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224085012|ref|XP_002307463.1| predicted protein [Populus trichocarpa] gi|222856912|gb|EEE94459.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|42570060|ref|NP_680660.2| BTB/POZ domain-containing protein [Arabidopsis thaliana] gi|75254656|sp|Q6DBN1.1|Y4845_ARATH RecName: Full=BTB/POZ domain-containing protein At4g08455 gi|50198819|gb|AAT70442.1| At4g08455 [Arabidopsis thaliana] gi|56381961|gb|AAV85699.1| At4g08455 [Arabidopsis thaliana] gi|332657244|gb|AEE82644.1| BTB/POZ domain-containing protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297809027|ref|XP_002872397.1| BTB/POZ domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297318234|gb|EFH48656.1| BTB/POZ domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|3377822|gb|AAC28195.1| contains similarity to Caenorhabditis elegans MEL-26 (GB:U67737) [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|388521233|gb|AFK48678.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|302141753|emb|CBI18956.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225459685|ref|XP_002285888.1| PREDICTED: BTB/POZ domain-containing protein At4g08455-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query252
TAIR|locus:504955382243 AT4G08455 [Arabidopsis thalian 0.662 0.687 0.536 2.4e-37
ZFIN|ZDB-GENE-061103-277392 spoplb "speckle-type POZ prote 0.317 0.204 0.421 4.2e-12
ZFIN|ZDB-GENE-050320-3394 spopla "speckle-type POZ prote 0.317 0.203 0.397 2.2e-10
UNIPROTKB|Q0IHH9374 spop-b "Speckle-type POZ prote 0.289 0.195 0.405 3.1e-08
UNIPROTKB|Q6P8B3374 spop "Speckle-type POZ protein 0.289 0.195 0.405 3.1e-08
UNIPROTKB|Q7ZX06374 spop-a "Speckle-type POZ prote 0.289 0.195 0.405 3.1e-08
UNIPROTKB|Q6IQ16392 SPOPL "Speckle-type POZ protei 0.317 0.204 0.349 6.2e-08
ZFIN|ZDB-GENE-040426-1378374 spop "speckle-type POZ protein 0.313 0.211 0.390 8.8e-08
MGI|MGI:3027903365 Tdpoz3 "TD and POZ domain cont 0.242 0.167 0.412 2.8e-07
RGD|1311613335 Spop "speckle-type POZ protein 0.289 0.217 0.391 3.3e-07
TAIR|locus:504955382 AT4G08455 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 96/179 (53%), Positives = 108/179 (60%)

Query:    32 MRCISCREEYGTRDAGTCKXXXXXXXXXXXXXXXXIEDLKAKVAFLRFWSPLDXXXXXXX 91
             MRCISCREEY  R+AGTCK                I+DLKAKVAFLR  S LD       
Sbjct:     1 MRCISCREEYLPRNAGTCKECYVEAGETEEELKREIDDLKAKVAFLRLSSSLDHGTSSTS 60

Query:    92 XXXXCGPCYTDVVLVAASESGXXXXXXXXXXXXXXXXSRSPVFKAMLDNEMEESRSGTIK 151
                     +TDVVL+A+ ++                 SRSPVFKAML+NEMEES SGTIK
Sbjct:    61 RS------FTDVVLIASEDNAGSPPIPAHKSVLV---SRSPVFKAMLENEMEESLSGTIK 111

Query:   152 ISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEKYQ-HNAKQLLEAAL--SLITDN 207
             ISDVSYDALR FV YLYTAEACLDEQ+ACDLL ++EKYQ  + K   E  L   L  DN
Sbjct:   112 ISDVSYDALRTFVYYLYTAEACLDEQMACDLLVMSEKYQVKHLKSYCERFLVTKLSPDN 170
GO:0005737 "cytoplasm" evidence=ISM
GO:0005515 "protein binding" evidence=IPI
ZFIN|ZDB-GENE-061103-277 spoplb "speckle-type POZ protein-like b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050320-3 spopla "speckle-type POZ protein-like a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IHH9 spop-b "Speckle-type POZ protein B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6P8B3 spop "Speckle-type POZ protein" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZX06 spop-a "Speckle-type POZ protein A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|Q6IQ16 SPOPL "Speckle-type POZ protein-like" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1378 spop "speckle-type POZ protein" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:3027903 Tdpoz3 "TD and POZ domain containing 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1311613 Spop "speckle-type POZ protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q6DBN1Y4845_ARATHNo assigned EC number0.67480.80950.8395yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 2e-20
pfam00651101 pfam00651, BTB, BTB/POZ domain 8e-19
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information 
 Score = 82.7 bits (205), Expect = 2e-20
 Identities = 35/89 (39%), Positives = 49/89 (55%), Gaps = 8/89 (8%)

Query: 102 DVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALR 161
           DV LV   +           AHKAVL + SP FKA+  ++ +ES    I + DVS +  R
Sbjct: 1   DVTLVVGGKK--------FHAHKAVLAAHSPYFKALFSSDFKESDKSEIYLDDVSPEDFR 52

Query: 162 AFVNYLYTAEACLDEQLACDLLELAEKYQ 190
           A +N+LYT +  L E+   +LLELA+  Q
Sbjct: 53  ALLNFLYTGKLDLPEENVEELLELADYLQ 81

Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures. Length = 97
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 252
PHA02713 557 hypothetical protein; Provisional 99.87
PHA02790 480 Kelch-like protein; Provisional 99.86
KOG4441 571 consensus Proteins containing BTB/POZ and Kelch do 99.86
PHA03098 534 kelch-like protein; Provisional 99.85
KOG4350 620 consensus Uncharacterized conserved protein, conta 99.84
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.79
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.71
KOG2075 521 consensus Topoisomerase TOP1-interacting protein B 99.68
KOG0783 1267 consensus Uncharacterized conserved protein, conta 99.35
KOG4591280 consensus Uncharacterized conserved protein, conta 99.28
KOG4682 488 consensus Uncharacterized conserved protein, conta 99.19
KOG0783 1267 consensus Uncharacterized conserved protein, conta 98.76
KOG0511516 consensus Ankyrin repeat protein [General function 98.55
KOG2838 401 consensus Uncharacterized conserved protein, conta 98.28
KOG2838401 consensus Uncharacterized conserved protein, conta 98.15
KOG2716230 consensus Polymerase delta-interacting protein PDI 97.66
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 97.64
KOG3473112 consensus RNA polymerase II transcription elongati 97.63
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.4
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.29
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 97.25
KOG1987297 consensus Speckle-type POZ protein SPOP and relate 97.02
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 96.67
KOG0511 516 consensus Ankyrin repeat protein [General function 96.65
KOG1724162 consensus SCF ubiquitin ligase, Skp1 component [Po 96.06
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 96.01
KOG2714 465 consensus SETA binding protein SB1 and related pro 94.52
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 93.34
KOG1665 302 consensus AFH1-interacting protein FIP2, contains 90.24
KOG2715210 consensus Uncharacterized conserved protein, conta 87.91
KOG1778 319 consensus CREB binding protein/P300 and related TA 84.93
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information 
Probab=99.87  E-value=2.6e-21  Score=186.63  Aligned_cols=116  Identities=18%  Similarity=0.337  Sum_probs=105.8

Q ss_pred             CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCC-cceEEecCCCHHHHHHHHHHHhcCcccCCh
Q 025481           98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESR-SGTIKISDVSYDALRAFVNYLYTAEACLDE  176 (252)
Q Consensus        98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~-~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~  176 (252)
                      ..+|||+|+|++       ++.|+|||+|||++|+||++||.++++|.. +..|.|.++++++|+.+|+|+|||.  ++.
T Consensus        23 ~~l~DV~L~v~~-------~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~~--i~~   93 (557)
T PHA02713         23 DILCDVIITIGD-------GEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNRH--ISS   93 (557)
T ss_pred             CCCCCEEEEeCC-------CCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCCC--CCH
Confidence            569999999973       689999999999999999999999999864 7899999999999999999999997  689


Q ss_pred             HHHHHHHHHHHHh------------------------------hhchHHHHHHHHHHHHHhHHHHhCchhHHhhhh
Q 025481          177 QLACDLLELAEKY------------------------------QHNAKQLLEAALSLITDNMDKLTKCEEYRELVE  222 (252)
Q Consensus       177 ~~~~~ll~~A~~y------------------------------~~~~~~L~~~c~~~i~~~~~~v~~~e~f~~L~~  222 (252)
                      +++.+||.+|++|                              .+.+..|.+.|.+||.+||.++.++++|..|+.
T Consensus        94 ~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L~~  169 (557)
T PHA02713         94 MNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKTVF  169 (557)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhCCH
Confidence            9999999999999                              455667889999999999999999999998875

>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown] Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription] Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG0511 consensus Ankyrin repeat protein [General function prediction only] Back     alignment and domain information
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only] Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only] Back     alignment and domain information
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only] Back     alignment and domain information
>KOG1778 consensus CREB binding protein/P300 and related TAZ Zn-finger proteins [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 1e-07
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 2e-07
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure 
Iteration: 1

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 42/61 (68%)
Query: 129 SRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQLACDLLELAEK 188
           +RSPVF AM ++EMEES+   ++I+DV  +  +  + ++YT +A   +++A DLL  A+K
Sbjct: 195 ARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLDKMADDLLAAADK 254
Query: 189 Y 189
           Y
Sbjct: 255 Y 255
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query252
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 3e-26
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 5e-26
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 6e-26
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 7e-22
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 1e-18
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 3e-18
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 4e-18
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 1e-17
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 9e-17
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 4e-16
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 8e-16
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 1e-14
2vpk_A116 Myoneurin; transcription regulation, transcription 2e-14
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 2e-14
3b84_A119 Zinc finger and BTB domain-containing protein 48; 4e-14
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 1e-13
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 4e-13
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 9e-13
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 1e-11
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 4e-11
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-04
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
 Score = 99.6 bits (249), Expect = 3e-26
 Identities = 40/144 (27%), Positives = 65/144 (45%), Gaps = 38/144 (26%)

Query: 100 YTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDA 159
           +TD  L  A +           AHKA+L +RSPVF AM ++EMEES+   ++I+DV  + 
Sbjct: 34  FTDCCLCVAGQE--------FQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEV 85

Query: 160 LRAFVNYLYTAEACLDEQLACDLLELAEKYQ----------------------------- 190
            +  + ++YT +A   +++A DLL  A+KY                              
Sbjct: 86  FKEMMCFIYTGKAPNLDKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILAD 145

Query: 191 -HNAKQLLEAALSLITDNMDKLTK 213
            H+A QL   A+  I  +   + +
Sbjct: 146 LHSADQLKTQAVDFINYHATDVLE 169
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.91
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.9
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.9
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 99.9
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.9
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.89
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.89
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.88
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.88
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.88
2vpk_A116 Myoneurin; transcription regulation, transcription 99.88
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.87
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 99.87
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.87
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.86
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.86
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.85
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.85
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.83
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.82
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.5
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.4
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.13
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.93
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.71
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.65
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.58
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.29
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.14
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 97.63
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 96.69
3kvt_A115 Potassium channel protein SHAW; tetramerization do 93.65
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 92.77
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 91.14
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 89.61
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 89.28
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
Probab=99.91  E-value=3.8e-24  Score=162.05  Aligned_cols=103  Identities=31%  Similarity=0.451  Sum_probs=90.0

Q ss_pred             CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481           98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ  177 (252)
Q Consensus        98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~  177 (252)
                      ..+|||+|+++++    ++++.|+|||.||+++|+||++||.++|.|+. ..|.|+++++++|+.+|+|+|||.+.++.+
T Consensus         6 ~~~~Dv~l~v~~~----~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-~~i~l~~~~~~~f~~~l~~iYt~~~~~~~~   80 (109)
T 2vkp_A            6 ELMADVHFVVGPP----GATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-SEIHIPDVEPAAFLILLKYMYSDEIDLEAD   80 (109)
T ss_dssp             CTTCCEEEEESST----TSCEEEEECHHHHHHHCHHHHHHHC------C-CEEEETTSCHHHHHHHHHHHHHCCCCCCTT
T ss_pred             CCcccEEEEECCC----CCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-CeEEeCCCCHHHHHHHHHHHcCCCccCCHH
Confidence            5689999999831    11289999999999999999999999999988 999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHHh
Q 025481          178 LACDLLELAEKYQHNAKQLLEAALSLITDN  207 (252)
Q Consensus       178 ~~~~ll~~A~~y~~~~~~L~~~c~~~i~~~  207 (252)
                      ++.+++.+|++|  +++.|++.|.+||.++
T Consensus        81 ~~~~ll~~A~~~--~~~~L~~~c~~~l~~~  108 (109)
T 2vkp_A           81 TVLATLYAAKKY--IVPALAKACVNFLETS  108 (109)
T ss_dssp             THHHHHHHHHHT--TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CcHHHHHHHHHHHHhh
Confidence            999999999999  9999999999999876
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 252
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 9e-11
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 1e-08
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 9e-11
 Identities = 20/91 (21%), Positives = 43/91 (47%), Gaps = 8/91 (8%)

Query: 100 YTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDA 159
            TDVV+V + E           AHK VL++ S +F ++  ++++ + S      +++ + 
Sbjct: 25  LTDVVIVVSREQ--------FRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEG 76

Query: 160 LRAFVNYLYTAEACLDEQLACDLLELAEKYQ 190
               ++++YT+   L E     ++  A   Q
Sbjct: 77  FNILLDFMYTSRLNLREGNIMAVMATAMYLQ 107
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query252
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.89
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.88
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 98.21
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 98.0
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 96.57
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 96.47
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 96.38
d3kvta_103 akv3.1 voltage-gated potassium channel {California 95.71
d1t1da_100 Shaker potassium channel {California sea hare (Apl 94.67
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: POZ domain
superfamily: POZ domain
family: BTB/POZ domain
domain: B-cell lymphoma 6 (Bcl6) protein BTB domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=2.7e-23  Score=159.49  Aligned_cols=99  Identities=19%  Similarity=0.316  Sum_probs=94.3

Q ss_pred             CccccEEEEeccCCCCCCCCceEehhHHHHhhccHHHHHhhcCccccCCcceEEecCCCHHHHHHHHHHHhcCcccCChH
Q 025481           98 PCYTDVVLVAASESGPAGPAVPVPAHKAVLVSRSPVFKAMLDNEMEESRSGTIKISDVSYDALRAFVNYLYTAEACLDEQ  177 (252)
Q Consensus        98 ~~~sDv~l~v~~~~~~~~~~~~f~aHk~ILaarS~~F~~mf~~~~~e~~~~~I~l~dvs~~~f~~lL~ylYtg~~~~~~~  177 (252)
                      ..||||+|+++        |+.|+|||+||+++|+||++||.+.+.++....+.++++++++|+.+|+|+|||++.++.+
T Consensus        23 ~~~~Dv~l~v~--------~~~~~~Hk~vLa~~S~~F~~~f~~~~~e~~~~~~~~~~v~~~~f~~ll~~~Ytg~~~i~~~   94 (122)
T d1r29a_          23 DILTDVVIVVS--------REQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINPEGFNILLDFMYTSRLNLREG   94 (122)
T ss_dssp             TCSCCEEEEET--------TEEEEECHHHHHHHCHHHHHHHTSTTTTTCSEEECCTTSCHHHHHHHHHHHHHSCCCCCTT
T ss_pred             CCCeEEEEEEC--------CEEEEEehHHhhhCCHHHHHHhccchhhhcceeeeecccCHHHHHHHHhhhcCCeecCchh
Confidence            56999999998        8999999999999999999999999998888888889999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhchHHHHHHHHHHHHH
Q 025481          178 LACDLLELAEKYQHNAKQLLEAALSLITD  206 (252)
Q Consensus       178 ~~~~ll~~A~~y~~~~~~L~~~c~~~i~~  206 (252)
                      ++.+++.+|++|  +++.|.+.|.+||..
T Consensus        95 ~v~~ll~~A~~l--~i~~L~~~C~~~L~~  121 (122)
T d1r29a_          95 NIMAVMATAMYL--QMEHVVDTCRKFIKA  121 (122)
T ss_dssp             THHHHHHHHHHT--TCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHH--CcHHHHHHHHHHHHh
Confidence            999999999999  999999999999864
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure