Citrus Sinensis ID: 025496

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250--
Protein Sequence
MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQLFIVDLLFQNLCIHF
Secondary Structure (PSIPRED)
cHHHHHHHHHHccccccccHHHHHHHccccccccccccHHHcccccHHHHHHcccccccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHcccccHHccccHHHcccccccccHHHHHHHHHccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccEEEHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDAQRALLDELMGAARNLTEEEKKEYKEikwddkevcpfymvrfcphdlfvntrsdlgpcprihdqklkesfeksprhdayvpKFEAELAQFCEKLVMDLDRRVRRGRerlsqevepappppisaeksEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAaertqshisgkqhigygMVRDFITEYKVCQLFIVDLLFQNLCIHF
Flexible Loop (DISEMBL)
MDAQRALLDElmgaarnlteeekkeykeikwddkeVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRerlsqevepappppisaekseQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEIlnvekttltqqsqndKVLMMAQEKKMALCEICGSFLVANDAAERtqshisgkqhiGYGMVRDFITEYKVCQLFIVDLLFQNLCIHF
Low Complexity Region (SEG)
MDAQRALLDELMGAARNLTeeekkeykeikwddkeVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDrrvrrgrerLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQLFIVDLLFQNLCIHF
Disordered region (IsUnstruct)
*************************YKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPR*****************AYVPKFEAELAQFCEKLVMDL**********************************************************ALMRKVEILNVEKT**********VLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQLFIVDLLFQNLCIH*
Disordered Region (DISOPRED)
*DAQRALLDELMGAA***************WDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLK*************PKFEAELAQFCEKLVMDLDRRVRR***************************LEEKIKNLLEQVETLGEAGKVDEAEALMRKV****************************ALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQLFIVDLLFQNLCIHF
Disordered Region (DISEMBL)
MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRG********************SEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQLFIVDLLFQNLCIHF
Disordered Region (DISPRO)
***************************EIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN**VLMM**EKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQLFIVDLLFQNLCIHF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
xxxxxxxxxxxxxxxxxxxxxEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPIxxxxxxxxxxxxxxxxxxxxxxxxxxxxGKVDExxxxxxxxxxxxxxxxxxxxxSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQLFIVDLLFQNLCIHF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	252	2.2.26 [Sep-21-2011]
Q5R8W6	432	Luc7-like protein 3 OS=Po	yes	no	0.865	0.504	0.417	4e-47
O95232	432	Luc7-like protein 3 OS=Ho	yes	no	0.865	0.504	0.417	4e-47
Q3SX41	432	Luc7-like protein 3 OS=Bo	yes	no	0.865	0.504	0.417	4e-47
Q5SUF2	432	Luc7-like protein 3 OS=Mu	no	no	0.884	0.516	0.413	4e-47
Q54XQ8	360	Luc7-like protein OS=Dict	yes	no	0.892	0.625	0.334	1e-33
Q9CYI4	371	Putative RNA-binding prot	no	no	0.892	0.606	0.327	3e-29
Q9NQ29	371	Putative RNA-binding prot	no	no	0.892	0.606	0.327	3e-29
Q9Y383	392	Putative RNA-binding prot	no	no	0.884	0.568	0.325	4e-28
Q7TNC4	392	Putative RNA-binding prot	no	no	0.884	0.568	0.325	4e-28
Q9USM4	264	U1 snRNP-associated prote	yes	no	0.841	0.803	0.264	7e-19

>sp|Q5R8W6|LC7L3_PONAB Luc7-like protein 3 OS=Pongo abelii GN=LUC7L3 PE=2 SV=1

 Score =  188 bits (477), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 146/235 (62%), Gaps = 17/235 (7%)

Query: 7   LLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
           LLDELMG  RNL  +EK+    ++WD + VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct: 7   LLDELMGRDRNLAPDEKR--SNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query: 67  KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRER--LSQEVEPAPPPPIS 124
            L++ +EKS R       +E +  ++ + L+ +++RR+RRG  R  LSQ  + +     +
Sbjct: 65  NLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query: 125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEK-----TTLTQQSQ 179
            +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+     TT T +S 
Sbjct: 123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIES- 181

Query: 180 NDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
                  AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E K
Sbjct: 182 -----FAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELK 231

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.
Pongo abelii (taxid: 9601)

>sp|O95232|LC7L3_HUMAN Luc7-like protein 3 OS=Homo sapiens GN=LUC7L3 PE=1 SV=2

 Score =  188 bits (477), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 146/235 (62%), Gaps = 17/235 (7%)

Query: 7   LLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
           LLDELMG  RNL  +EK+    ++WD + VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct: 7   LLDELMGRDRNLAPDEKR--SNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query: 67  KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRER--LSQEVEPAPPPPIS 124
            L++ +EKS R       +E +  ++ + L+ +++RR+RRG  R  LSQ  + +     +
Sbjct: 65  NLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query: 125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEK-----TTLTQQSQ 179
            +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+     TT T +S 
Sbjct: 123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIES- 181

Query: 180 NDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
                  AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E K
Sbjct: 182 -----FAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELK 231

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q3SX41|LC7L3_BOVIN Luc7-like protein 3 OS=Bos taurus GN=LUC7L3 PE=2 SV=1

 Score =  188 bits (477), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 98/235 (41%), Positives = 146/235 (62%), Gaps = 17/235 (7%)

Query: 7   LLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
           LLDELMG  RNL  +EK+    ++WD + VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct: 7   LLDELMGRDRNLAPDEKR--SNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query: 67  KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRER--LSQEVEPAPPPPIS 124
            L++ +EKS R       +E +  ++ + L+ +++RR+RRG  R  LSQ  + +     +
Sbjct: 65  NLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query: 125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEK-----TTLTQQSQ 179
            +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+     TT T +S 
Sbjct: 123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIES- 181

Query: 180 NDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
                  AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E K
Sbjct: 182 -----FAAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELK 231

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Bos taurus (taxid: 9913)

>sp|Q5SUF2|LC7L3_MOUSE Luc7-like protein 3 OS=Mus musculus GN=Luc7l3 PE=1 SV=1

 Score =  187 bits (476), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 95/230 (41%), Positives = 144/230 (62%), Gaps = 7/230 (3%)

Query: 7   LLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
           LLDELMG  RNL  +EK+    ++WD + VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct: 7   LLDELMGRDRNLAPDEKR--SNVRWDHESVCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query: 67  KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRER--LSQEVEPAPPPPIS 124
            L++ +EKS R       +E +  ++ + L+ +++RR+RRG  R  LSQ  + +     +
Sbjct: 65  NLRKQYEKSSRF--MKVGYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query: 125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
            +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct: 123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query: 185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
             AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E K
Sbjct: 183 -AAQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELK 231

Binds cAMP regulatory element DNA sequence. May play a role in RNA splicing.

Mus musculus (taxid: 10090)

>sp|Q54XQ8|LUC7L_DICDI Luc7-like protein OS=Dictyostelium discoideum GN=crop PE=3 SV=1

 Score =  143 bits (361), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 141/254 (55%), Gaps = 29/254 (11%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTR-SDLGP 59
           MDA RA LDE +G  RNL  +++ +  E  ++D ++C F++   CPH+LF N    DLGP
Sbjct: 1   MDAIRAQLDEFLGKDRNLLPKDRIKV-ENDFNDPDICKFFLCGLCPHELFTNANIRDLGP 59

Query: 60  CPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVE--- 116
           C ++HD+   + ++ +   D Y   +E E  +  E L+ D D++++R +ERL Q      
Sbjct: 60  CSKLHDENCVKQYQNNKDKDKY--DYEREWVRVIEGLISDNDKKIKRNKERLLQNPNGDA 117

Query: 117 -----PAPPPPIS------------AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEA 159
                P     IS             E++ +++ L+ KI+ LL++ E LGE G++ EA+A
Sbjct: 118 NHHGGPIQQQSISQLDDEEGGLLPDKEQNSKITELDLKIQELLKKAEELGEEGQITEAQA 177

Query: 160 LMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQ 219
           LM + + L  +K  L +  Q        + K+M++CEICG+ L   D  +R+ SH+ GK+
Sbjct: 178 LMTEADELKNQKVELEKIEQ-----EKNENKRMSVCEICGALLFVGDKEKRSISHLEGKK 232

Query: 220 HIGYGMVRDFITEY 233
           HIG+  +R+ + EY
Sbjct: 233 HIGFQKIREVMEEY 246

May play a role in RNA splicing.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9CYI4|LUC7L_MOUSE Putative RNA-binding protein Luc7-like 1 OS=Mus musculus GN=Luc7l PE=2 SV=2

 Score =  129 bits (323), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 13/238 (5%)

Query: 1   MDAQ---RALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDL 57
           M AQ   RALLD+LMG AR+  E  ++    +K+ D  VC  +++  CPHD+   TR DL
Sbjct: 1   MSAQAQMRALLDQLMGTARDGDETRQR----VKFTDDRVCKSHLLDCCPHDILAGTRMDL 56

Query: 58  GPCPRIHDQKLKESFE-KSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVE 116
           G C +IHD  L+  +E  S   D +   FE +     E  + + DRR    ++RL+ E +
Sbjct: 57  GECTKIHDLALRADYEIASKERDLF---FELDAMDHLESFIAECDRRTELAKKRLA-ETQ 112

Query: 117 PAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQ 176
                 +SA K+E++  L E+I  LL + E LG  G VDE++ ++ +VE +  +K    +
Sbjct: 113 EEISAEVSA-KAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEE 171

Query: 177 QSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
           + +N       Q++K+ +CE+C ++L  +D   R   H  GK H+G+  +R+ + + +
Sbjct: 172 EYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLR 229

May bind to RNA via its Arg/Ser-rich domain.

Mus musculus (taxid: 10090)

>sp|Q9NQ29|LUC7L_HUMAN Putative RNA-binding protein Luc7-like 1 OS=Homo sapiens GN=LUC7L PE=1 SV=1

 Score =  128 bits (322), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 78/238 (32%), Positives = 130/238 (54%), Gaps = 13/238 (5%)

Query: 1   MDAQ---RALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDL 57
           M AQ   RALLD+LMG AR+  E  ++    +K+ D  VC  +++  CPHD+   TR DL
Sbjct: 1   MSAQAQMRALLDQLMGTARDGDETRQR----VKFTDDRVCKSHLLDCCPHDILAGTRMDL 56

Query: 58  GPCPRIHDQKLKESFE-KSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVE 116
           G C +IHD  L+  +E  S   D +   FE +     E  + + DRR    ++RL+ E +
Sbjct: 57  GECTKIHDLALRADYEIASKERDLF---FELDAMDHLESFIAECDRRTELAKKRLA-ETQ 112

Query: 117 PAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQ 176
                 +SA K+E++  L E+I  LL + E LG  G VDE++ ++ +VE +  +K    +
Sbjct: 113 EEISAEVSA-KAEKVHELNEEIGKLLAKAEQLGAEGNVDESQKILMEVEKVRAKKKEAEE 171

Query: 177 QSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
           + +N       Q++K+ +CE+C ++L  +D   R   H  GK H+G+  +R+ + + +
Sbjct: 172 EYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIQIREKLDQLR 229

May bind to RNA via its Arg/Ser-rich domain.

Homo sapiens (taxid: 9606)

>sp|Q9Y383|LC7L2_HUMAN Putative RNA-binding protein Luc7-like 2 OS=Homo sapiens GN=LUC7L2 PE=1 SV=2

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 129/240 (53%), Gaps = 17/240 (7%)

Query: 1   MDAQ---RALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDL 57
           M AQ   RA+LD+LMG +R+     ++    IK+ D  VC  +++  CPHD+   TR DL
Sbjct: 1   MSAQAQMRAMLDQLMGTSRDGDTTRQR----IKFSDDRVCKSHLLNCCPHDVLSGTRMDL 56

Query: 58  GPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEP 117
           G C ++HD  L+  +E + +   +   FE +     +  + D DRR    ++RL++  E 
Sbjct: 57  GECLKVHDLALRADYEIASKEQDFF--FELDAMDHLQSFIADCDRRTEVAKKRLAETQEE 114

Query: 118 APPPPISAE---KSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTL 174
                ISAE   K+E++  L E+I  LL +VE LG  G V+E++ +M +VE    +K   
Sbjct: 115 -----ISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREA 169

Query: 175 TQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
            +  +N       Q++K+ +CE+C ++L  +D   R   H  GK H+G+  +R+ + E K
Sbjct: 170 EEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELK 229

May bind to RNA via its Arg/Ser-rich domain.

Homo sapiens (taxid: 9606)

>sp|Q7TNC4|LC7L2_MOUSE Putative RNA-binding protein Luc7-like 2 OS=Mus musculus GN=Luc7l2 PE=1 SV=1

 Score =  125 bits (313), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/240 (32%), Positives = 129/240 (53%), Gaps = 17/240 (7%)

Query: 1   MDAQ---RALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDL 57
           M AQ   RA+LD+LMG +R+     ++    IK+ D  VC  +++  CPHD+   TR DL
Sbjct: 1   MSAQAQMRAMLDQLMGTSRDGDTTRQR----IKFSDDRVCKSHLLNCCPHDVLSGTRMDL 56

Query: 58  GPCPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEP 117
           G C ++HD  L+  +E + +   +   FE +     +  + D DRR    ++RL++  E 
Sbjct: 57  GECLKVHDLALRADYEIASKEQDFF--FELDAMDHLQSFIADCDRRTEVSKKRLAETQEE 114

Query: 118 APPPPISAE---KSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTL 174
                ISAE   K+E++  L E+I  LL +VE LG  G V+E++ +M +VE    +K   
Sbjct: 115 -----ISAEVAAKAERVHELNEEIGKLLAKVEQLGAEGNVEESQKVMDEVEKARAKKREA 169

Query: 175 TQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
            +  +N       Q++K+ +CE+C ++L  +D   R   H  GK H+G+  +R+ + E K
Sbjct: 170 EEVYRNSMPASSFQQQKLRVCEVCSAYLGLHDNDRRLADHFGGKLHLGFIEIREKLEELK 229

May bind to RNA via its Arg/Ser-rich domain.

Mus musculus (taxid: 10090)

>sp|Q9USM4|LUC7_SCHPO U1 snRNP-associated protein usp106 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=usp106 PE=1 SV=1

 Score = 94.4 bits (233), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/234 (26%), Positives = 116/234 (49%), Gaps = 22/234 (9%)

Query: 4   QRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRI 63
           QR ++++LMG+  NL+    +    + + D++VC  ++   CPHD+F NT+ DLGPCP+I
Sbjct: 5   QRKIIEQLMGS--NLSNFTSRGL--VHFTDRKVCRSFLCGICPHDIFTNTKMDLGPCPKI 60

Query: 64  HDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPI 123
           H  KLK  +E++     Y   +E +  +  E+ V D ++R+       ++  +       
Sbjct: 61  HSDKLKSDYERASYSHDY--GYEWDYLEDLERHVDDCNKRIDIAE---ARREKTKEEEER 115

Query: 124 SAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKV 183
             E    +   +  I+ ++ ++E L +   V++A     ++  L   +  L      D+V
Sbjct: 116 IDELMRDIIHTDHSIEVIITEMEALAKRKLVNDAVKHFIELNRLKTYRKELY-----DEV 170

Query: 184 LMMAQ--------EKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDF 229
           + M +         +K+ +C+IC ++L   D   R   H SGK H+GY M+R+ 
Sbjct: 171 ISMNEIPSQASTTHQKLQVCDICSAYLSRLDNDRRLADHFSGKMHLGYAMLRNI 224

Component of the U1 snRNP particle, which recognizes and binds the 5'-splice site of pre-mRNA. Together with other non-snRNP factors, U1 snRNP forms the spliceosomal commitment complex, that targets pre-mRNA to the splicing pathway.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
147783651	363	hypothetical protein VITISV_039964 [Viti	0.924	0.641	0.914	1e-116
225466119	358	PREDICTED: luc7-like protein 3-like [Vit	0.924	0.650	0.909	1e-116
296084210	336	unnamed protein product [Vitis vinifera]	0.924	0.693	0.909	1e-116
449451769	347	PREDICTED: luc7-like protein 3-like [Cuc	0.924	0.671	0.896	1e-115
363808290	346	uncharacterized protein LOC100792348 [Gl	0.936	0.682	0.886	1e-115
356531607	342	PREDICTED: luc7-like protein 3-like [Gly	0.936	0.690	0.886	1e-115
255645469	342	unknown [Glycine max]	0.936	0.690	0.886	1e-115
449506483	347	PREDICTED: LOW QUALITY PROTEIN: luc7-lik	0.924	0.671	0.892	1e-115
388519913	344	unknown [Lotus japonicus]	0.932	0.683	0.860	1e-113
30524685	342	salt tolerance protein 3 [Beta vulgaris]	0.920	0.678	0.862	1e-111

>gi|147783651|emb|CAN72521.1| hypothetical protein VITISV_039964 [Vitis vinifera]

 Score =  424 bits (1091), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 213/233 (91%), Positives = 222/233 (95%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMGAARNLTEEEKK YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGAARNLTEEEKKGYKEVTWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           PRIHDQKLKESFEKSPRHD+YVP+FEAELAQFCEKLVMDLDRRVRRGRERL+QEVE APP
Sbjct: 61  PRIHDQKLKESFEKSPRHDSYVPRFEAELAQFCEKLVMDLDRRVRRGRERLAQEVEAAPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
            P+S EKSEQLSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKVE+LN EKT LTQQ QN
Sbjct: 121 APLSLEKSEQLSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVEMLNAEKTVLTQQPQN 180

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEY 233
           DKVLM+AQEKKMALCE CGSFLVANDAAERTQSH++GKQHIGYGMVRDFITEY
Sbjct: 181 DKVLMLAQEKKMALCETCGSFLVANDAAERTQSHVTGKQHIGYGMVRDFITEY 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225466119|ref|XP_002267755.1| PREDICTED: luc7-like protein 3-like [Vitis vinifera]

 Score =  423 bits (1087), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/233 (90%), Positives = 222/233 (95%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMGAARNLTEEEKK YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGAARNLTEEEKKGYKEVTWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           PRIHDQKLKESFEKSPRHD+YVP+FEAEL+QFCEKLVMDLDRRVRRGRERL+QEVE APP
Sbjct: 61  PRIHDQKLKESFEKSPRHDSYVPRFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEAAPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
            P+S EKSEQLSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKVE+LN EKT LTQQ QN
Sbjct: 121 APLSLEKSEQLSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVEMLNAEKTVLTQQPQN 180

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEY 233
           DKVLM+AQEKKMALCE CGSFLVANDAAERTQSH++GKQHIGYGMVRDFITEY
Sbjct: 181 DKVLMLAQEKKMALCETCGSFLVANDAAERTQSHVTGKQHIGYGMVRDFITEY 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296084210|emb|CBI24598.3| unnamed protein product [Vitis vinifera]

 Score =  422 bits (1085), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 212/233 (90%), Positives = 222/233 (95%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMGAARNLTEEEKK YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGAARNLTEEEKKGYKEVTWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           PRIHDQKLKESFEKSPRHD+YVP+FEAEL+QFCEKLVMDLDRRVRRGRERL+QEVE APP
Sbjct: 61  PRIHDQKLKESFEKSPRHDSYVPRFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEAAPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
            P+S EKSEQLSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKVE+LN EKT LTQQ QN
Sbjct: 121 APLSLEKSEQLSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVEMLNAEKTVLTQQPQN 180

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEY 233
           DKVLM+AQEKKMALCE CGSFLVANDAAERTQSH++GKQHIGYGMVRDFITEY
Sbjct: 181 DKVLMLAQEKKMALCETCGSFLVANDAAERTQSHVTGKQHIGYGMVRDFITEY 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449451769|ref|XP_004143633.1| PREDICTED: luc7-like protein 3-like [Cucumis sativus]

 Score =  421 bits (1081), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 209/233 (89%), Positives = 224/233 (96%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMG+ARNLTEEE++ YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
            RIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL+QEVEPAPP
Sbjct: 61  TRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLAQEVEPAPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
            P+SAEKSEQLSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKV++LN EKT LTQQ+QN
Sbjct: 121 TPLSAEKSEQLSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVDLLNTEKTALTQQTQN 180

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEY 233
           DKVLM+AQEKKMALCEICGSFLVANDAAER QSH++GKQH+GYGMVRDFI+E+
Sbjct: 181 DKVLMLAQEKKMALCEICGSFLVANDAAERVQSHVTGKQHVGYGMVRDFISEH 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808290|ref|NP_001241987.1| uncharacterized protein LOC100792348 [Glycine max] gi|255641887|gb|ACU21212.1| unknown [Glycine max]

 Score =  420 bits (1079), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/237 (88%), Positives = 223/237 (94%), Gaps = 1/237 (0%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMGAARNLTEEE+K YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGAARNLTEEERKGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           PRIHD KLKESFEKSPRHDAYVPKFEAEL+QFCEKLVMDLDRRVRRGRERL+QEVEP PP
Sbjct: 61  PRIHDPKLKESFEKSPRHDAYVPKFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEPTPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
           PP++AEKSEQLSVLEEKIKNLLEQVE+LGEAGKVDEAEALMRKVE LN EKT LT Q QN
Sbjct: 121 PPLTAEKSEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVETLNAEKTALT-QPQN 179

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQ 237
           DKVLM+ QEKKMALCEICGSFLVANDAAERTQSH++GKQH+GYGMVRDFI E+K  +
Sbjct: 180 DKVLMLGQEKKMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFINEFKTAK 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531607|ref|XP_003534368.1| PREDICTED: luc7-like protein 3-like [Glycine max]

 Score =  419 bits (1078), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/237 (88%), Positives = 224/237 (94%), Gaps = 1/237 (0%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMGAARNLTEEE+K YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGAARNLTEEERKGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           PRIHD KLKESFEKSPRHDAYVPKFEAEL+QFCEKLVMDLDRRVRRGRERL+QEVEPAPP
Sbjct: 61  PRIHDPKLKESFEKSPRHDAYVPKFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEPAPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
           PP++AEKSEQLSVLEEKIKNLLEQVE+LGEAGKVDEAEALMRKVE LN EKT LT Q QN
Sbjct: 121 PPLTAEKSEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVETLNAEKTALT-QPQN 179

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQ 237
           DK+LM+ QEKKMALCEICGSFLVANDAAERTQSH++GKQH+GYGMVRDFI E+K  +
Sbjct: 180 DKLLMLGQEKKMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFINEFKTAK 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255645469|gb|ACU23230.1| unknown [Glycine max]

 Score =  419 bits (1077), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 210/237 (88%), Positives = 224/237 (94%), Gaps = 1/237 (0%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMGAARNLTEEE+K YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGAARNLTEEERKGYKEVSWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           PRIHD KLKESFEKSPRHDAYVPKFEAEL+QFCEKLVMDLDRRVRRGRERL+QEVEPAPP
Sbjct: 61  PRIHDPKLKESFEKSPRHDAYVPKFEAELSQFCEKLVMDLDRRVRRGRERLAQEVEPAPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
           PP++AEKSEQLSVLEEKIKNLLEQVE+LGEAGKVDEAEALMRKVE LN EKT LT Q QN
Sbjct: 121 PPLTAEKSEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVETLNAEKTALT-QPQN 179

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQ 237
           DK+LM+ QEKKMALCEICGSFLVANDAAERTQSH++GKQH+GYGMVRDFI E+K  +
Sbjct: 180 DKLLMLGQEKKMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFINEFKTAK 236

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449506483|ref|XP_004162762.1| PREDICTED: LOW QUALITY PROTEIN: luc7-like protein 3-like [Cucumis sativus]

 Score =  418 bits (1075), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 208/233 (89%), Positives = 223/233 (95%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMG+ARNLTEEE++ YKE+ WDDKEVC FYMVRFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGSARNLTEEERRGYKEVMWDDKEVCGFYMVRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
            RIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERL+QEVEPAPP
Sbjct: 61  TRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLAQEVEPAPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
            P+SAEKSEQLSVLEEKIKNLLEQVE LGEAGKVDEAEALMRKV++LN EKT LTQQ+QN
Sbjct: 121 TPLSAEKSEQLSVLEEKIKNLLEQVEALGEAGKVDEAEALMRKVDLLNTEKTALTQQTQN 180

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEY 233
           DKVLM+AQE KMALCEICGSFLVANDAAER QSH++GKQH+GYGMVRDFI+E+
Sbjct: 181 DKVLMLAQEXKMALCEICGSFLVANDAAERVQSHVTGKQHVGYGMVRDFISEH 233

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519913|gb|AFK48018.1| unknown [Lotus japonicus]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 204/237 (86%), Positives = 223/237 (94%), Gaps = 2/237 (0%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMG+ARNLTEEE+K +KE+ WDDKEVC FY VRFCPH+LFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGSARNLTEEERKGFKEVSWDDKEVCGFYTVRFCPHNLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           PRIHDQKLKESFEKSPRHDA+VPKFEAELAQFCEKLVMDLDR+VRRGRERLSQEVEP PP
Sbjct: 61  PRIHDQKLKESFEKSPRHDAFVPKFEAELAQFCEKLVMDLDRKVRRGRERLSQEVEPPPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
           PP++AEKSEQLSVLEEKIKNLLEQVE+LGEAGKVDEAEALMRKV+ LN EKT LT Q QN
Sbjct: 121 PPLTAEKSEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVDTLNTEKTALT-QPQN 179

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQ 237
           +K LM AQEKKMALCEICGSFLVANDAAERTQSH++GKQH+GYGMVRDFI+E++  +
Sbjct: 180 EK-LMQAQEKKMALCEICGSFLVANDAAERTQSHVTGKQHVGYGMVRDFISEFQTAK 235

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30524685|emb|CAC85244.1| salt tolerance protein 3 [Beta vulgaris]

 Score =  408 bits (1048), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 201/233 (86%), Positives = 215/233 (92%), Gaps = 1/233 (0%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
           MDAQRALLDELMGAARNLT+EEKK Y+EIKWDDKEVC  YM+RFCPHDLFVNTRSDLGPC
Sbjct: 1   MDAQRALLDELMGAARNLTDEEKKGYREIKWDDKEVCAPYMIRFCPHDLFVNTRSDLGPC 60

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           PR+HDQKLKESFE SPRHD+YVP+FEAELAQFCEKLV DLDR+VRRGRERL QEVEP PP
Sbjct: 61  PRVHDQKLKESFENSPRHDSYVPRFEAELAQFCEKLVADLDRKVRRGRERLDQEVEPPPP 120

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
           PPISAEK+EQLSVLEEKIKNLLEQVE+LGEAGKVDEAEALMRKVE LN+EK  LTQQ QN
Sbjct: 121 PPISAEKAEQLSVLEEKIKNLLEQVESLGEAGKVDEAEALMRKVESLNLEKAALTQQPQN 180

Query: 181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEY 233
               M+ QEKKMALCEICGSFLVANDA ERTQSHI+GKQHIGYGMVRD++ EY
Sbjct: 181 -AATMLTQEKKMALCEICGSFLVANDAVERTQSHITGKQHIGYGMVRDYLAEY 232

Source: Beta vulgaris

Species: Beta vulgaris

Genus: Beta

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	252
TAIR|locus:2163640	334	AT5G51410 "AT5G51410" [Arabido	0.936	0.706	0.742	5.9e-89
FB|FBgn0029887	438	CG3198 [Drosophila melanogaste	0.686	0.394	0.396	1.2e-39
UNIPROTKB|Q3SX41	432	LUC7L3 "Luc7-like protein 3" [	0.884	0.516	0.369	3.9e-37
UNIPROTKB|O95232	432	LUC7L3 "Luc7-like protein 3" [	0.884	0.516	0.369	3.9e-37
UNIPROTKB|F1RTB6	432	LUC7L3 "Uncharacterized protei	0.884	0.516	0.369	3.9e-37
UNIPROTKB|Q5R8W6	432	LUC7L3 "Luc7-like protein 3" [	0.884	0.516	0.369	3.9e-37
MGI|MGI:1914934	432	Luc7l3 "LUC7-like 3 (S. cerevi	0.884	0.516	0.369	3.9e-37
RGD|1307981	477	Luc7l3 "LUC7-like 3 (S. cerevi	0.884	0.467	0.369	3.9e-37
UNIPROTKB|E1C6U8	434	LUC7L3 "Uncharacterized protei	0.884	0.513	0.365	8e-37
DICTYBASE|DDB_G0278799	360	crop "Luc7 family protein" [Di	0.892	0.625	0.314	1e-27

TAIR|locus:2163640 AT5G51410 "AT5G51410" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 176/237 (74%), Positives = 189/237 (79%)

Query:     1 MDAQRALLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPC 60
             MDAQRALLDELMGAARNLT                VC FYMVRFCPHDLFVNT+SDLG C
Sbjct:     1 MDAQRALLDELMGAARNLTDEERRGFKEVKWDDREVCAFYMVRFCPHDLFVNTKSDLGAC 60

Query:    61 PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXXXLSQEVEPAPP 120
              RIHD KLKESFE SPRHD+YVPKFEAELAQFCEKLV DLD         L+QEVEP PP
Sbjct:    61 SRIHDPKLKESFENSPRHDSYVPKFEAELAQFCEKLVNDLDRKVRRGRERLAQEVEPVPP 120

Query:   121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
             P +SAEK+EQLSVLEEK+KNLLEQVE LGE GKVDEAEALMRKVE LN EKT L Q+   
Sbjct:   121 PSLSAEKAEQLSVLEEKVKNLLEQVEALGEEGKVDEAEALMRKVEGLNAEKTVLLQRP-T 179

Query:   181 DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQ 237
             DKVL MAQEKKMALCE+CGSFLVANDA ERTQSH++GKQH+GYG+VRDFI E K  +
Sbjct:   180 DKVLAMAQEKKMALCEVCGSFLVANDAVERTQSHVTGKQHVGYGLVRDFIAEQKAAK 236

GO:0003723 "RNA binding" evidence=TAS

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

FB|FBgn0029887 CG3198 [Drosophila melanogaster (taxid:7227)]

 Score = 299 (110.3 bits), Expect = 1.2e-39, Sum P(2) = 1.2e-39
 Identities = 71/179 (39%), Positives = 95/179 (53%)

Query:     1 MDAQRALLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPC 60
             +DA R +LDELMG  RNL                  C FY V+FCPHDLF+NTR+DLGPC
Sbjct:     2 VDAARQMLDELMGRNRNL--HPSEAGAKVNWEDPEFCQFYNVKFCPHDLFINTRADLGPC 59

Query:    61 PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXXXL--SQEVEPA 118
              RIHD++ +  +E + R      ++E E  +FC  ++ D+D         L   Q  +P 
Sbjct:    60 ARIHDEEARHLYEDA-RPSQRKRQYEDEFLRFCNVMLHDVDRKIQKGKQRLLLMQRDQPN 118

Query:   119 PPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQ 177
              P P+S  + EQL+ L  +I  LL + E  G  G VD+A+ LM   E L  EK  L QQ
Sbjct:   119 VPAPLSRHQ-EQLANLTARINKLLSEAEEAGIRGDVDQAQDLMTVCEELKEEKEQLVQQ 176

GO:0005685 "U1 snRNP" evidence=ISS

GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS

UNIPROTKB|Q3SX41 LUC7L3 "Luc7-like protein 3" [Bos taurus (taxid:9913)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 85/230 (36%), Positives = 128/230 (55%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E K
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELK 231

GO:0008380 "RNA splicing" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0016607 "nuclear speck" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|O95232 LUC7L3 "Luc7-like protein 3" [Homo sapiens (taxid:9606)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 85/230 (36%), Positives = 128/230 (55%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E K
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELK 231

GO:0003677 "DNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0016607 "nuclear speck" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0006915 "apoptotic process" evidence=IMP

GO:0006950 "response to stress" evidence=IMP

GO:0008380 "RNA splicing" evidence=IMP

GO:0003729 "mRNA binding" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005925 "focal adhesion" evidence=IDA

UNIPROTKB|F1RTB6 LUC7L3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 85/230 (36%), Positives = 128/230 (55%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E K
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELK 231

GO:0008380 "RNA splicing" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003729 "mRNA binding" evidence=IEA

UNIPROTKB|Q5R8W6 LUC7L3 "Luc7-like protein 3" [Pongo abelii (taxid:9601)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 85/230 (36%), Positives = 128/230 (55%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E K
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELK 231

GO:0003729 "mRNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0006950 "response to stress" evidence=ISS

GO:0008380 "RNA splicing" evidence=ISS

MGI|MGI:1914934 Luc7l3 "LUC7-like 3 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 85/230 (36%), Positives = 128/230 (55%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E K
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELK 231

GO:0003677 "DNA binding" evidence=IEA

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0006915 "apoptotic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0008380 "RNA splicing" evidence=ISO

RGD|1307981 Luc7l3 "LUC7-like 3 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 399 (145.5 bits), Expect = 3.9e-37, P = 3.9e-37
 Identities = 85/230 (36%), Positives = 128/230 (55%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + E K
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEELK 231

GO:0003729 "mRNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0005925 "focal adhesion" evidence=ISO

GO:0006915 "apoptotic process" evidence=ISO

GO:0006950 "response to stress" evidence=ISO

GO:0008380 "RNA splicing" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|E1C6U8 LUC7L3 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 396 (144.5 bits), Expect = 8.0e-37, P = 8.0e-37
 Identities = 84/230 (36%), Positives = 128/230 (55%)

Query:     7 LLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ 66
             LLDELMG  RNL                 VC +Y+  FCP +LF NTRSDLGPC +IHD+
Sbjct:     7 LLDELMGRDRNLAPDEKRSNVRWDHES--VCKYYLCGFCPAELFTNTRSDLGPCEKIHDE 64

Query:    67 KLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXX--XLSQEVEPAPPPPIS 124
              L++ +EKS R       +E +  ++ + L+ +++           LSQ  + +     +
Sbjct:    65 NLRKQYEKSSRFMKV--GYERDFLRYLQSLLAEVERRIRRGHARLALSQNQQSSGAAGPT 122

Query:   125 AEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQNDKVL 184
              +  E++ VL +KI  LL+Q+E LG  GKV+EA+ +M+ VE L  E+  L   +   +  
Sbjct:   123 GKNEEKIQVLTDKIDVLLQQIEELGSEGKVEEAQGMMKLVEQLKEERELLRSTTSTIESF 182

Query:   185 MMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
               AQEK+M +CE+CG+FL+  DA  R   H+ GKQH+GY  ++  + + K
Sbjct:   183 A-AQEKQMEVCEVCGAFLIVGDAQSRVDDHLMGKQHMGYAKIKATVEDLK 231

GO:0003729 "mRNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005925 "focal adhesion" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006950 "response to stress" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

DICTYBASE|DDB_G0278799 crop "Luc7 family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 80/254 (31%), Positives = 124/254 (48%)

Query:     1 MDAQRALLDELMGAARNLTXXXXXXXXXXXXXXXXVCPFYMVRFCPHDLFVNTR-SDLGP 59
             MDA RA LDE +G  RNL                 +C F++   CPH+LF N    DLGP
Sbjct:     1 MDAIRAQLDEFLGKDRNLLPKDRIKVENDFNDPD-ICKFFLCGLCPHELFTNANIRDLGP 59

Query:    60 CPRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDXXXXXXXXXLSQEVE--- 116
             C ++HD+   + ++ +   D Y   +E E  +  E L+ D D         L Q      
Sbjct:    60 CSKLHDENCVKQYQNNKDKDKY--DYEREWVRVIEGLISDNDKKIKRNKERLLQNPNGDA 117

Query:   117 -----PAPPPPISA------------EKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEA 159
                  P     IS             E++ +++ L+ KI+ LL++ E LGE G++ EA+A
Sbjct:   118 NHHGGPIQQQSISQLDDEEGGLLPDKEQNSKITELDLKIQELLKKAEELGEEGQITEAQA 177

Query:   160 LMRKVEILNVEKTTLTQQSQNDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQ 219
             LM + + L  +K  L +  Q        + K+M++CEICG+ L   D  +R+ SH+ GK+
Sbjct:   178 LMTEADELKNQKVELEKIEQEKN-----ENKRMSVCEICGALLFVGDKEKRSISHLEGKK 232

Query:   220 HIGYGMVRDFITEY 233
             HIG+  +R+ + EY
Sbjct:   233 HIGFQKIREVMEEY 246

GO:0003674 "molecular_function" evidence=ND

GO:0008380 "RNA splicing" evidence=IEA;ISS

GO:0006950 "response to stress" evidence=ISS

GO:0006915 "apoptotic process" evidence=ISS

GO:0006376 "mRNA splice site selection" evidence=ISS

GO:0005685 "U1 snRNP" evidence=ISS

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0003729 "mRNA binding" evidence=ISS

GO:0006397 "mRNA processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	252
pfam03194	252	pfam03194, LUC7, LUC7 N_terminus	7e-87
COG5200	258	COG5200, LUC7, U1 snRNP component, mediates U1 snR	2e-29

>gnl|CDD|217417 pfam03194, LUC7, LUC7 N_terminus

 Score =  258 bits (660), Expect = 7e-87
 Identities = 97/237 (40%), Positives = 141/237 (59%), Gaps = 9/237 (3%)

Query: 1   MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPC 60
            DAQR +LD+LMG+ RN  E  +     +K+DD+EVC  Y+V FCPHDLF NT+ DLGPC
Sbjct: 1   ADAQRKMLDQLMGSNRNGDESRQS----VKFDDREVCRSYLVGFCPHDLFQNTKMDLGPC 56

Query: 61  PRIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPP 120
           P++HD KLK  +E++ +   Y P +E E  +  E+ V D DR++ + ++RL    E    
Sbjct: 57  PKVHDLKLKADYERASKSQDYFP-YEVEALEILERFVHDCDRKIDKAKQRLELTQEEQTK 115

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQ- 179
               ++  E+L+ L+E+I  LL + E LGE GKVDEA  LM++VE L  +K  L    + 
Sbjct: 116 IAADSKA-EELAELDEEIGKLLAEAEALGEEGKVDEAMKLMKEVEELKAKKKELEDSDEV 174

Query: 180 --NDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYK 234
                    AQ++K+ +CE+CG++L   D   R   H  GK H+GY  VR+ + E K
Sbjct: 175 RNAAPSSAQAQQQKLRVCEVCGAYLSRLDNDRRLADHFGGKLHLGYVKVREKLAELK 231

This family contains the N terminal region of several LUC7 protein homologues and only contains eukaryotic proteins. LUC7 has been shown to be a U1 snRNA associated protein with a role in splice site recognition. The family also contains human and mouse LUC7 like (LUC7L) proteins and human cisplatin resistance-associated overexpressed protein (CROP). Length = 252

>gnl|CDD|227527 COG5200, LUC7, U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

 Score =  110 bits (277), Expect = 2e-29
 Identities = 65/228 (28%), Positives = 110/228 (48%), Gaps = 12/228 (5%)

Query: 2   DAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCP 61
             QR +L++LMG     +  +        + DK+VC   +V FCP DLF NT+  LG CP
Sbjct: 3   AEQRKVLEQLMG--PERSTFDPCRP--THFTDKKVCISMLVGFCPFDLFRNTKRSLGKCP 58

Query: 62  RIHDQKLKESFEKSPRHDAYVPKFEAELAQFCEKLVMDLDRRVR-RGRERLSQEVEPAPP 120
             H++K K  +E++ R  A   ++E E  +   ++V+  +  +R  G E       P   
Sbjct: 59  TSHEEKYKAEYERNGRERAE--EYEWEYLRLLVRIVLSCNDGIRAAGLED---RTTPEEF 113

Query: 121 PPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVEKTTLTQQSQN 180
             I  EK E  + ++E I  L  + + L +   V+ A +   ++E L  E+  + +   +
Sbjct: 114 GKIK-EKEELFNRVDESIGELGMEGDALAKRKLVERACSAFNELERLREERKEIKEAVYS 172

Query: 181 -DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVR 227
             +       +K+ +C ICG++L   D   R   H +GK H+GY +VR
Sbjct: 173 MVENNGQGTHQKLQVCGICGAYLSRLDTDRRLADHFNGKLHLGYLLVR 220

Length = 258

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	252
PF03194	254	LUC7: LUC7 N_terminus; InterPro: IPR004882 This fa	100.0
KOG0796	319	consensus Spliceosome subunit [RNA processing and	100.0
COG5200	258	LUC7 U1 snRNP component, mediates U1 snRNP associa	100.0
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	89.17
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	87.97
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	87.6
PF04012	221	PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T	87.36
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	83.41
PHA02562	562	46 endonuclease subunit; Provisional	82.61
TIGR02302	851	aProt_lowcomp conserved hypothetical protein TIGR0	81.83
COG0419	908	SbcC ATPase involved in DNA repair [DNA replicatio	80.26

>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes

Probab=100.00  E-value=8.3e-88  Score=606.81  Aligned_cols=231  Identities=44%  Similarity=0.806  Sum_probs=208.1

Q ss_pred             CHHHHHHHHHhcCCCCCCChhhhhhhcccCCCCCCCcchhhcCCChhHhhhhcccCCCCCCccccHHHHHHhhcCCCCCC
Q 025496            1 MDAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDA   80 (252)
Q Consensus         1 md~~RalLDeLMG~~Rn~~~~~~~~~~~~~f~D~~VCk~yL~G~CPhdLF~nTK~DlG~C~kiHde~lk~~Ye~~~~~~~   80 (252)
                      ||+||+|||||||++||+++.++    .++|+||+|||||||||||||||+|||+||||||||||++||++|++++++++
T Consensus         1 md~~Ra~LdeLMG~~Rn~~~~~~----~~~f~D~~VCk~~L~g~CPhdLF~nTK~DLG~C~kiHd~~lk~~Ye~~~~~~~   76 (254)
T PF03194_consen    1 MDEMRAMLDELMGSNRNGDPSKR----KVHFTDPDVCKYFLVGFCPHDLFVNTKSDLGPCPKIHDEALKAEYEKASKKEK   76 (254)
T ss_pred             CHHHHHHHHHHcCCccCCCcccc----CCCCCCcccCHHHHhCCCcHHHHhhcccccchhhhhcCHHHHHHHHhCccccc
Confidence            89999999999999999876543    27999999999999999999999999999999999999999999999999888


Q ss_pred             ChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHH
Q 025496           81 YVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEAL  160 (252)
Q Consensus        81 ~~~gYE~e~~~~L~~~i~d~drkI~~~k~RL~~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~  160 (252)
                      +. |||++|+++|+++|++|||||++|++||+.++++.. ........++|.+|+++|+.++++||+||++|+||+|+++
T Consensus        77 ~~-~YE~e~~~~L~~~i~d~drrI~~~k~RL~~~~~~~~-~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~  154 (254)
T PF03194_consen   77 YG-GYEREFLRYLQRLIRDCDRRIERAKERLEQTQEEQA-KEADEEKAEKIDELDEKIGELLKEAEELGEEGDVDEAQKL  154 (254)
T ss_pred             cc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccc-cchhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            84 599999999999999999999999999998765432 2233335899999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHh---hhhh-hhhhhhhhhccccccccchhhhcccChhhHhhhhhcchhhhcHHHHHHHHHHHHhh
Q 025496          161 MRKVEILNVEKTTLTQ---QSQN-DKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVC  236 (252)
Q Consensus       161 ~~~~e~Lk~ek~~l~~---~~~~-~~~~~~~~~qkl~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~Gy~kIR~~l~eL~~~  236 (252)
                      |.+||.|+.+++++++   ++.. ..++.++++|+|+||+|||||||++|||+||+|||+||||+||++||+++++|++.
T Consensus       155 ~~~~e~Lk~ek~~le~~~~~~~~~~~~~~~~~~qkl~VCeVCGA~Ls~~D~d~RladH~~GK~HlGy~~IR~~l~el~e~  234 (254)
T PF03194_consen  155 MEEVEKLKEEKEELEKELEEYRNSIENSAQSQQQKLEVCEVCGAFLSVGDNDRRLADHFGGKQHLGYAKIREKLKELKEK  234 (254)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcccccCccchhhhhhHHhccchHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            9999999999999998   3311 12233468999999999999999999999999999999999999999999999985


Q ss_pred             c
Q 025496          237 Q  237 (252)
Q Consensus       237 ~  237 (252)
                      .
T Consensus       235 ~  235 (254)
T PF03194_consen  235 R  235 (254)
T ss_pred             H
Confidence            4

LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].

>KOG0796 consensus Spliceosome subunit [RNA processing and modification]

Probab=100.00  E-value=8.4e-82  Score=574.91  Aligned_cols=228  Identities=43%  Similarity=0.784  Sum_probs=203.9

Q ss_pred             CHH-HHHHHHHhcCCCCCCChhhhhhhcccCCCCCCCcchhhcCCChhHhhhhcccCCCCCCccccHHHHHHhhcCCCCC
Q 025496            1 MDA-QRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHD   79 (252)
Q Consensus         1 md~-~RalLDeLMG~~Rn~~~~~~~~~~~~~f~D~~VCk~yL~G~CPhdLF~nTK~DlG~C~kiHde~lk~~Ye~~~~~~   79 (252)
                      |++ ||+|||||||++||+....    ..++|+||+||+||||||||||||+|||+|+|+||+|||++||++|+.+++..
T Consensus         1 Msa~mR~mLdqLMGs~r~~~~~~----~~v~~~D~~VC~~fLvg~CPHDlF~nTk~dlg~C~kvHd~~lk~~Ye~~~k~~   76 (319)
T KOG0796|consen    1 MSAQMRAMLDQLMGSNRDGDETR----QRVKFDDPDVCKSFLVGFCPHDLFQNTKMDLGPCPKVHDEALKADYERASKER   76 (319)
T ss_pred             CchHHHHHHHHHhCCCcCCCccc----CCCCCCchhHHHHHHhCCCcHHHhhhhhcccCcccchhhHHHHHHHhhchHhh
Confidence            655 9999999999999975432    23799999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHH
Q 025496           80 AYVPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEA  159 (252)
Q Consensus        80 ~~~~gYE~e~~~~L~~~i~d~drkI~~~k~RL~~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~  159 (252)
                      ++  |||++|+++|+++|.+|+++|+++++||+++.++.  ......++++|..|+++|+.++++||+||++|+|++||+
T Consensus        77 ~~--~~E~d~~~~l~~~v~d~~rri~~~kerL~e~~ee~--~~e~~~k~~~v~~l~e~I~~~l~~~E~LG~eG~Veeaq~  152 (319)
T KOG0796|consen   77 DY--GYEWDALEILERFVADVDRRIEKAKERLAETVEER--SEEAARKAEKVHELEEKIGKLLEKAEELGEEGNVEEAQK  152 (319)
T ss_pred             hh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence            99  99999999999999999999999999999874322  223334578999999999999999999999999999999


Q ss_pred             HHHHHHHHHH-HHHHHHhhhhhhhh-hhhhhhccccccccchhhhcccChhhHhhhhhcchhhhcHHHHHHHHHHHHhhc
Q 025496          160 LMRKVEILNV-EKTTLTQQSQNDKV-LMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEYKVCQ  237 (252)
Q Consensus       160 ~~~~~e~Lk~-ek~~l~~~~~~~~~-~~~~~~qkl~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~Gy~kIR~~l~eL~~~~  237 (252)
                      +|.+||.|++ +++..+.++ ...+ .+++++|||+||+||||||+++|||+||||||+||+|+||++||++|.+|++..
T Consensus       153 ~~~e~E~lk~~e~e~~~~~~-~~~~~~~~~~~qkl~VCeVCGa~L~~~D~d~RlaDHf~GKlHlGy~~iR~~l~eLk~~~  231 (319)
T KOG0796|consen  153 AMKEVEELKAKEKEEAEESY-NTTMPGASAQQQKLRVCEVCGAFLSVNDADRRLADHFGGKLHLGYVLIREKLAELKKEK  231 (319)
T ss_pred             HHHHHHHHHHHHHHHHHHHH-ccCcchhhhhhhhhhHHHhhhHHHhccchHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Confidence            9999999997 666666666 3333 345689999999999999999999999999999999999999999999998843

>COG5200 LUC7 U1 snRNP component, mediates U1 snRNP association with cap-binding complex [RNA processing and modification]

Probab=100.00  E-value=1.6e-67  Score=456.65  Aligned_cols=235  Identities=28%  Similarity=0.494  Sum_probs=205.5

Q ss_pred             HHHHHHHHHhcCCCCCCChhhhhhhcccCCCCCCCcchhhcCCChhHhhhhcccCCCCCCccccHHHHHHhhcCCCCCCC
Q 025496            2 DAQRALLDELMGAARNLTEEEKKEYKEIKWDDKEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQKLKESFEKSPRHDAY   81 (252)
Q Consensus         2 d~~RalLDeLMG~~Rn~~~~~~~~~~~~~f~D~~VCk~yL~G~CPhdLF~nTK~DlG~C~kiHde~lk~~Ye~~~~~~~~   81 (252)
                      +++|++|+||||++|..-.    ..+.+||+||+||+||||||||||||+|||+|||+||++|.+.+|++|+.+...+++
T Consensus         3 aeqRkv~eqLmG~~~s~f~----~~r~~hftd~kvC~s~Lvg~CP~dlF~nTk~slGkCp~~H~~k~K~~YeR~~~~~~~   78 (258)
T COG5200           3 AEQRKVLEQLMGPERSTFD----PCRPTHFTDKKVCISMLVGFCPFDLFRNTKRSLGKCPTSHEEKYKAEYERNGRERAE   78 (258)
T ss_pred             hHHHHHHHHHhCCCcccCC----CCCCccccchHHHHHHHHccCcHHHHhccccccCCCcchhHHHHHHHHhhhhhccch
Confidence            7899999999999996322    223579999999999999999999999999999999999999999999999988899


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------H
Q 025496           82 VPKFEAELAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGK-------V  154 (252)
Q Consensus        82 ~~gYE~e~~~~L~~~i~d~drkI~~~k~RL~~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~-------V  154 (252)
                        +|||||++.|.++|.+|+.+|+.|-.++..+.          +...+|+++++.|+-+-..++.+|.+|+       |
T Consensus        79 --~yEweyl~~L~r~V~~cn~~I~~a~~~~~~t~----------ee~~kI~e~~e~~~~~d~sIg~lg~e~dalakrk~V  146 (258)
T COG5200          79 --EYEWEYLRLLVRIVLSCNDGIRAAGLEDRTTP----------EEFGKIKEKEELFNRVDESIGELGMEGDALAKRKLV  146 (258)
T ss_pred             --hhhHHHHHHHHHHHHHhcchhhhhhhhccCCH----------HHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence              99999999999999999999999987775432          3334555555555555555566666665       9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhh-hhhhhhhhhhccccccccchhhhcccChhhHhhhhhcchhhhcHHHHHHHHHHH
Q 025496          155 DEAEALMRKVEILNVEKTTLTQQSQ-NDKVLMMAQEKKMALCEICGSFLVANDAAERTQSHISGKQHIGYGMVRDFITEY  233 (252)
Q Consensus       155 deA~~~~~~~e~Lk~ek~~l~~~~~-~~~~~~~~~~qkl~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~Gy~kIR~~l~eL  233 (252)
                      +.|+..+.+++.|+.+++++...+- .++|++++.+|||+||+|||||||+.|||+||||||.||+|+||+.+|+.|..|
T Consensus       147 ~~a~~~f~el~rl~~~rkei~~~v~sm~en~gq~thqklqvC~iCgayLsrlDtdrrladHf~GklHlGy~~~R~dl~~l  226 (258)
T COG5200         147 ERACSAFNELERLREERKEIKEAVYSMVENNGQGTHQKLQVCGICGAYLSRLDTDRRLADHFNGKLHLGYLLVRSDLADL  226 (258)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcchhhhhhhhhhhhhhhHHHhcchhhHHHHHhccchhhhHHHHHHHHHHH
Confidence            9999999999999999999998871 256788889999999999999999999999999999999999999999999998


Q ss_pred             Hh-------hccchhhhhhhhhhccC
Q 025496          234 KV-------CQLFIVDLLFQNLCIHF  252 (252)
Q Consensus       234 ~~-------~~~~~~~~~~~~~~~~~  252 (252)
                      .+       +.+|.++|.|++|++|.
T Consensus       227 lk~~~~sr~~~~~k~~~sl~~~~~~~  252 (258)
T COG5200         227 LKKFGISRVAEIFKEGFSLKCLRVHP  252 (258)
T ss_pred             HHHhccchhhhcccccccchhhccCC
Confidence            76       46999999999999983

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=89.17  E-value=0.2  Score=29.81  Aligned_cols=25  Identities=20%  Similarity=0.700  Sum_probs=20.7

Q ss_pred             cccccchhhhcccChhhHhhhhhcchhh
Q 025496          193 ALCEICGSFLVANDAAERTQSHISGKQH  220 (252)
Q Consensus       193 ~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H  220 (252)
                      ..|++|+...+   ++.-+..|+.||.|
T Consensus         2 ~~C~~C~k~f~---~~~~~~~H~~sk~H   26 (27)
T PF12171_consen    2 FYCDACDKYFS---SENQLKQHMKSKKH   26 (27)
T ss_dssp             CBBTTTTBBBS---SHHHHHCCTTSHHH
T ss_pred             CCcccCCCCcC---CHHHHHHHHccCCC
Confidence            57999996644   66779999999998

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=87.97  E-value=0.22  Score=28.68  Aligned_cols=24  Identities=25%  Similarity=0.699  Sum_probs=19.5

Q ss_pred             ccccchhhhcccChhhHhhhhhcchhh
Q 025496          194 LCEICGSFLVANDAAERTQSHISGKQH  220 (252)
Q Consensus       194 VCdVCGA~Ls~~D~d~Rl~dH~~GK~H  220 (252)
                      .|+||+...+   +..=+..|+.||.|
T Consensus         2 ~C~~C~~~f~---s~~~~~~H~~s~~H   25 (25)
T PF12874_consen    2 YCDICNKSFS---SENSLRQHLRSKKH   25 (25)
T ss_dssp             EETTTTEEES---SHHHHHHHHTTHHH
T ss_pred             CCCCCCCCcC---CHHHHHHHHCcCCC
Confidence            6999987644   56679999999988

>smart00451 ZnF_U1 U1-like zinc finger

Probab=87.60  E-value=0.33  Score=30.05  Aligned_cols=29  Identities=21%  Similarity=0.481  Sum_probs=21.7

Q ss_pred             cccccchhhhcccChhhHhhhhhcchhhhcHH
Q 025496          193 ALCEICGSFLVANDAAERTQSHISGKQHIGYG  224 (252)
Q Consensus       193 ~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~Gy~  224 (252)
                      .-|++|+..+.   +..-+..|+.||.|..-+
T Consensus         4 ~~C~~C~~~~~---~~~~~~~H~~gk~H~~~~   32 (35)
T smart00451        4 FYCKLCNVTFT---DEISVEAHLKGKKHKKNV   32 (35)
T ss_pred             eEccccCCccC---CHHHHHHHHChHHHHHHH
Confidence            45999998755   334459999999996543

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription

Probab=87.36  E-value=7.3  Score=34.05  Aligned_cols=82  Identities=22%  Similarity=0.297  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH
Q 025496           91 QFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVE  170 (252)
Q Consensus        91 ~~L~~~i~d~drkI~~~k~RL~~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~e  170 (252)
                      ..|..+|+|++.-|.+++.-++...      ........++.++...|...-.+|+..-..|+=|-|...+.....+..+
T Consensus        26 ~~l~q~ird~e~~l~~a~~~~a~~~------a~~~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~   99 (221)
T PF04012_consen   26 KMLEQAIRDMEEQLRKARQALARVM------ANQKRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQ   99 (221)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            6899999999999999998886432      1334567899999999999999999999999998887777766666666


Q ss_pred             HHHHHhhh
Q 025496          171 KTTLTQQS  178 (252)
Q Consensus       171 k~~l~~~~  178 (252)
                      ...++..+
T Consensus       100 ~~~l~~~~  107 (221)
T PF04012_consen  100 AERLEQQL  107 (221)
T ss_pred             HHHHHHHH
Confidence            65555444

The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=83.41  E-value=5.2  Score=36.41  Aligned_cols=21  Identities=29%  Similarity=0.526  Sum_probs=14.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhh
Q 025496           92 FCEKLVMDLDRRVRRGRERLS  112 (252)
Q Consensus        92 ~L~~~i~d~drkI~~~k~RL~  112 (252)
                      -++.=|.++..||.++...+.
T Consensus        63 ~~e~ei~~~r~r~~~~e~kl~   83 (239)
T COG1579          63 QLESEIQEIRERIKRAEEKLS   83 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            456667777777777777663

>PHA02562 46 endonuclease subunit; Provisional

Probab=82.61  E-value=12  Score=36.88  Aligned_cols=15  Identities=20%  Similarity=0.503  Sum_probs=11.5

Q ss_pred             cccccccchhhhccc
Q 025496          191 KMALCEICGSFLVAN  205 (252)
Q Consensus       191 kl~VCdVCGA~Ls~~  205 (252)
                      .-.+|+.||.-+...
T Consensus       283 ~~~~Cp~C~~~~~~~  297 (562)
T PHA02562        283 KGGVCPTCTQQISEG  297 (562)
T ss_pred             CCCCCCCCCCcCCCc
Confidence            346999999887654

>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302

Probab=81.83  E-value=2.9  Score=44.37  Aligned_cols=31  Identities=26%  Similarity=0.619  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHH
Q 025496          138 IKNLLEQVETLGEAGKVDEAEALMRKVEILN  168 (252)
Q Consensus       138 I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk  168 (252)
                      ++.+|..+|+|.++|..++|+.++.+++.+-
T Consensus       570 Lq~Mmd~ieela~~G~~~~A~qlL~qlq~mm  600 (851)
T TIGR02302       570 LQNMMDQIENLARSGDRDQAKQLLSQLQQMM  600 (851)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            7889999999999999999999999887754

Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.

>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]

Probab=80.26  E-value=43  Score=35.68  Aligned_cols=24  Identities=17%  Similarity=0.303  Sum_probs=17.5

Q ss_pred             ccccccchhhhcccChhhHhhhhhc
Q 025496          192 MALCEICGSFLVANDAAERTQSHIS  216 (252)
Q Consensus       192 l~VCdVCGA~Ls~~D~d~Rl~dH~~  216 (252)
                      ...|||||.-+--. .+..+.+|+.
T Consensus       457 ~~~CPvCg~~l~~~-~~~~~~~~~~  480 (908)
T COG0419         457 GEKCPVCGQELPEE-HEKELLELYE  480 (908)
T ss_pred             CCCCCCCCCCCCcH-HHHHHHHHHH
Confidence            47899999665433 3677888888

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	252
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	93.94
3cw1_L	77	U1 small nuclear ribonucleoprotein C; PRE-mRNA spl	82.6
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	80.81

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=93.94  E-value=0.36  Score=36.76  Aligned_cols=12  Identities=33%  Similarity=0.808  Sum_probs=10.0

Q ss_pred             ccccccchhhhc
Q 025496          192 MALCEICGSFLV  203 (252)
Q Consensus       192 l~VCdVCGA~Ls  203 (252)
                      -.+|+|||.-+.
T Consensus        47 g~~CPvCgs~l~   58 (112)
T 1l8d_A           47 KGKCPVCGRELT   58 (112)
T ss_dssp             SEECTTTCCEEC
T ss_pred             CCCCCCCCCcCC
Confidence            468999999876

>3cw1_L U1 small nuclear ribonucleoprotein C; PRE-mRNA splicing, spliceosome, RNA-binding domain, SM fold, finger, RNA recognition motif, 5' splice site; 5.49A {Homo sapiens} PDB: 1uw2_A 2vrd_A

Probab=82.60  E-value=0.38  Score=35.33  Aligned_cols=29  Identities=28%  Similarity=0.721  Sum_probs=23.9

Q ss_pred             cccccchhhhcccChhhHhhhhhcchhhhc
Q 025496          193 ALCEICGSFLVANDAAERTQSHISGKQHIG  222 (252)
Q Consensus       193 ~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~G  222 (252)
                      .-||.|..||. .|+..=...|..|+.|.+
T Consensus         4 YyCdYCd~~lt-~Ds~s~Rk~H~~G~kH~~   32 (77)
T 3cw1_L            4 FYCDYCDTYLT-HDSPSVRKTHCSGRKHKE   32 (77)
T ss_pred             cccccCCceec-CCCHHHHHHHHccHHHHH
Confidence            45999999975 677775678999999997

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=80.81  E-value=12  Score=32.48  Aligned_cols=57  Identities=12%  Similarity=0.131  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCch-------HHHHHHHHHHHHHHHHHHHHHHhh
Q 025496           89 LAQFCEKLVMDLDRRVRRGRERLSQEVEPAPPPPISA-------EKSEQLSVLEEKIKNLLEQVETLG  149 (252)
Q Consensus        89 ~~~~L~~~i~d~drkI~~~k~RL~~~~~~~~~~~~~~-------~~~~~i~~l~~~I~~ll~~aE~LG  149 (252)
                      -..-++.-|.++..||.+.+.+|....    .+..-.       ....++..++.+|..++.++|.+-
T Consensus        61 ~~~~~e~~i~~~~~ri~~~~~~l~~v~----~~kE~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~  124 (256)
T 3na7_A           61 QVSKNEQTLQDTNAKIASIQKKMSEIK----SERELRSLNIEEDIAKERSNQANREIENLQNEIKRKS  124 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCS----SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999996432    111111       234556666667777777666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	252
d256ba_	106	Cytochrome b562 {Escherichia coli [TaxId: 562]}	93.94
d2cqea2	29	Zinc finger CCCH domain-containing protein C19orf7	91.45
d1zu1a1	72	dsRNA-binding protein ZFa (ZNF346, JAZ) {African c	86.21

>d256ba_ a.24.3.1 (A:) Cytochrome b562 {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Cytochromes
family: Cytochrome b562
domain: Cytochrome b562
species: Escherichia coli [TaxId: 562]

Probab=93.94  E-value=0.27  Score=36.02  Aligned_cols=75  Identities=15%  Similarity=0.207  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHH
Q 025496           93 CEKLVMDLDRRVRRGRERLSQEVEPAPPPPISAEKSEQLSVLEEKIKNLLEQVETLGEAGKVDEAEALMRKVEILNVE  170 (252)
Q Consensus        93 L~~~i~d~drkI~~~k~RL~~~~~~~~~~~~~~~~~~~i~~l~~~I~~ll~~aE~LGeeG~VdeA~~~~~~~e~Lk~e  170 (252)
                      +..++.++..=+..++..+.......  ++..++...-...++ .+...+..+++|.++|++++|+.++.++..++.+
T Consensus        26 i~~~m~~lr~a~~d~~~~l~~~~~~~--~~~~~~~~~~~~g~d-~L~~~ld~i~~la~~G~l~eAk~~l~~l~~~r~~  100 (106)
T d256ba_          26 VKDALTKMRAAALDAQKATPPKLEDK--SPDSPEMKDFRHGFD-ILVGQIDDALKLANEGKVKEAQAAAEQLKTTRNA  100 (106)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCGGGTTS--CTTSHHHHHHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhhcc--ccccchHhHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            34444444444455655554322111  112222222233333 4667789999999999999999999999998754

>d2cqea2 g.66.1.1 (A:429-457) Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: CCCH zinc finger
superfamily: CCCH zinc finger
family: CCCH zinc finger
domain: Zinc finger CCCH domain-containing protein C19orf7 (KIAA1064)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.45  E-value=0.033  Score=31.87  Aligned_cols=24  Identities=42%  Similarity=1.183  Sum_probs=18.4

Q ss_pred             CCCcchhhcCCChhHhhhhcccCCCCCCccccH
Q 025496           34 KEVCPFYMVRFCPHDLFVNTRSDLGPCPRIHDQ   66 (252)
Q Consensus        34 ~~VCk~yL~G~CPhdLF~nTK~DlG~C~kiHde   66 (252)
                      .++||+|+-|+|       ||.  ..|+-.|++
T Consensus         6 kelCKfYvqGyC-------trg--enC~ymH~e   29 (29)
T d2cqea2           6 RELCKFYITGFC-------ARA--ENCPYMHGD   29 (29)
T ss_dssp             CSBCTTTTTTCC-------SCS--TTCSSBSSS
T ss_pred             hhhhhhheeeee-------cCC--cCcccccCC
Confidence            479999999999       444  368888863

>d1zu1a1 g.37.1.4 (A:2-73) dsRNA-binding protein ZFa (ZNF346, JAZ) {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: dsRNA-binding protein ZFa (ZNF346, JAZ)
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=86.21  E-value=0.084  Score=36.33  Aligned_cols=26  Identities=19%  Similarity=0.710  Sum_probs=20.9

Q ss_pred             cccccchhhhcccChhhHhhhhhcchhhh
Q 025496          193 ALCEICGSFLVANDAAERTQSHISGKQHI  221 (252)
Q Consensus       193 ~VCdVCGA~Ls~~D~d~Rl~dH~~GK~H~  221 (252)
                      --|.||||.|+.  ..+|++ ||.||.|-
T Consensus        33 ~~CkvC~a~L~s--eSQria-HYeskkHa   58 (72)
T d1zu1a1          33 TQCKVCSAVLIS--ESQKLA-HYQSRKHA   58 (72)
T ss_dssp             SEETTTTEECCS--HHHHHH-HHHCHHHH
T ss_pred             hhHHHhHHHHHH--HHHHHH-HHHHHHHH
Confidence            569999999885  456654 99999995