Citrus Sinensis ID: 025512

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHccccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccHcHHHHHHHHHccccHHHHHHHHHHHHHHccHccccccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
maspptkdapadkkaegstpkseatsgsvrdsssspsgasaasafpgvggaapnpfdfsamsgllndpsIKELAEQIAKDPAFNSMAEQLQKTLhganaeesipqfdttQYYSTMQQVMQNPQFMTMAERLGnalmqdpsmshmmesltnptkkdQIEERMAKikedpslkpildeiesggpsaMMKYWNDKDNTALHYAAGYGRKECVALLLENGAavtlqnmdgktpidvaKLNSQHDVLKLLEKDAFL
Flexible Loop (DISEMBL)
maspptkdapadkkaegstpkseatsgsvrdsssspsGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAkikedpslkpiLDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL
Low Complexity Region (SEG)
MASPPTKDAPADKKAEGSTPKSEatsgsvrdsssspsgasaasafpgvggaapNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL
Disordered region (IsUnstruct)
*****************************************************************************************************************************************************************************************MKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL****************
Disordered Region (DISOPRED)
*********************************************************FSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL
Disordered Region (DISEMBL)
********************************************FPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL
Disordered Region (DISPRO)
**************************************************AAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q9SAR5	342	Ankyrin repeat domain-con	no	no	0.645	0.473	0.586	2e-49
Q8BIZ1	1259	Ankyrin repeat and steril	yes	no	0.334	0.066	0.360	1e-05
Q7Z6G8	1248	Ankyrin repeat and steril	yes	no	0.334	0.067	0.360	1e-05
P0C6S7	1260	Ankyrin repeat and steril	yes	no	0.334	0.066	0.360	1e-05
Q1L8G6	1060	Ankyrin repeat and IBR do	yes	no	0.227	0.053	0.421	1e-05
P40480	1083	Protein HOS4 OS=Saccharom	yes	no	0.270	0.062	0.435	3e-05
Q09YK6	477	Ankyrin repeat, SAM and b	N/A	no	0.199	0.104	0.509	3e-05
Q5F478	990	Serine/threonine-protein	no	no	0.243	0.061	0.419	5e-05
Q1AAU6	1144	Arf-GAP with SH3 domain,	yes	no	0.163	0.035	0.463	6e-05
Q92625	1134	Ankyrin repeat and SAM do	no	no	0.334	0.074	0.348	6e-05

>sp|Q9SAR5|AKR2_ARATH Ankyrin repeat domain-containing protein 2 OS=Arabidopsis thaliana GN=AKR2 PE=1 SV=2

 Score =  196 bits (497), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/162 (58%), Positives = 119/162 (73%)

Query: 30  RDSSSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQ 89
            + SS P  AS +S    + G   N FDFS M+ +LNDPSI+E+AEQIAKDPAFN +AEQ
Sbjct: 21  ENKSSKPESASGSSTSSAMPGLNFNAFDFSNMASILNDPSIREMAEQIAKDPAFNQLAEQ 80

Query: 90  LQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLT 149
           LQ+++  A  E   P FD  QY +TMQQVM NP+F TMAE+LG AL+QDP MS  +++ +
Sbjct: 81  LQRSIPNAGQEGGFPNFDPQQYVNTMQQVMHNPEFKTMAEKLGTALVQDPQMSPFLDAFS 140

Query: 150 NPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWND 191
           NP   +   ERMA++KEDP LKPILDEI++GGPSAMMKYWND
Sbjct: 141 NPETAEHFTERMARMKEDPELKPILDEIDAGGPSAMMKYWND 182

Seems to be involved in the regulation of hydrogen peroxide levels during biotic and abiotic stresses by optimizing the ascorbate peroxidase 3 (APX3) hydrogen peroxide-degrading activity. This regulation might be monitored by GRF6.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8BIZ1|ANS1B_MOUSE Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Mus musculus GN=Anks1b PE=1 SV=3

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 160 RMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAV 219
            +A  K D  +  IL  I  G   + +   N+++ TALH AA YG  E VA+LLE     
Sbjct: 97  HLAAWKGDVEIVKIL--IHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVLLEELTDP 154

Query: 220 TLQNMDGKTPIDVAKLNSQHDVLKLL 245
           T++N   +TP+D+A L  +  V+K++
Sbjct: 155 TIRNSKLETPLDLAALYGRLRVVKMI 180

Isoform 2 may participate in the regulation of nucleoplasmic coilin protein interactions in neuronal and transformed cells.

Mus musculus (taxid: 10090)

>sp|Q7Z6G8|ANS1B_HUMAN Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Homo sapiens GN=ANKS1B PE=1 SV=2

 Score = 50.4 bits (119), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 160 RMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAV 219
            +A  K D  +  IL  I  G   + +   N+++ TALH AA YG  E VA+LLE     
Sbjct: 97  HLAAWKGDVEIVKIL--IHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVLLEELTDP 154

Query: 220 TLQNMDGKTPIDVAKLNSQHDVLKLL 245
           T++N   +TP+D+A L  +  V+K++
Sbjct: 155 TIRNSKLETPLDLAALYGRLRVVKMI 180

Isoform 4 may play a role as a modulator of APP processing. Overexpression can down-regulate APP processing.

Homo sapiens (taxid: 9606)

>sp|P0C6S7|ANS1B_RAT Ankyrin repeat and sterile alpha motif domain-containing protein 1B OS=Rattus norvegicus GN=Anks1b PE=1 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 2/86 (2%)

Query: 160 RMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAV 219
            +A  K D  +  IL  I  G   + +   N+++ TALH AA YG  E VA+LLE     
Sbjct: 97  HLAAWKGDVEIVKIL--IHHGPSHSRVNEQNNENETALHCAAQYGHSEVVAVLLEELTDP 154

Query: 220 TLQNMDGKTPIDVAKLNSQHDVLKLL 245
           T++N   +TP+D+A L  +  V+K++
Sbjct: 155 TIRNSKLETPLDLAALYGRLRVVKMI 180

Isoform 3 can regulate global protein synthesis by altering nucleolar numbers.

Rattus norvegicus (taxid: 10116)

>sp|Q1L8G6|AKIB1_DANRE Ankyrin repeat and IBR domain-containing protein 1 OS=Danio rerio GN=ankib1 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 35/57 (61%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
           ++K +T LHYAA  G K CV LL++N A + ++N D +TP D A+     D+   LE
Sbjct: 143 DNKKSTCLHYAAAAGMKNCVELLVKNAADLFVENEDRETPCDCAEKQHHKDLALSLE 199

Might act as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates.

Danio rerio (taxid: 7955)

>sp|P40480|HOS4_YEAST Protein HOS4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=HOS4 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 34/78 (43%), Positives = 44/78 (56%), Gaps = 10/78 (12%)

Query: 177 IESGGPSAMMKYWNDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMD--GKTPID 231
           IE GG        ND+DN   TALH AA  G  E V LL+ENGA V +++++  G TP+ 
Sbjct: 350 IEEGGYDI-----NDQDNAGNTALHEAALQGHIEIVELLIENGADVNIKSIEMFGDTPLI 404

Query: 232 VAKLNSQHDVLKLLEKDA 249
            A  N   DV+K L K+ 
Sbjct: 405 DASANGHLDVVKYLLKNG 422

Unknown. Component of the Set3C complex, which is required to repress early/middle sporulation genes during meiosis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q09YK6|ASZ1_ATEGE Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1 OS=Ateles geoffroyi GN=ASZ1 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/51 (50%), Positives = 31/51 (60%)

Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           TAL +AA  GRK  V  LLE GA   LQ  DGK P ++AK N  H++  LL
Sbjct: 186 TALTWAARQGRKSIVLKLLELGANKMLQTKDGKLPSEIAKRNKHHEIFSLL 236

Plays a central role during spermatogenesis by repressing transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Its association with pi-bodies suggests a participation in the primary piRNAs metabolic process. Required prior to the pachytene stage to facilitate the production of multiple types of piRNAs, including those associated with repeats involved in regulation of retrotransposons. May act by mediating protein-protein interactions during germ cell maturation.

Ateles geoffroyi (taxid: 9509)

>sp|Q5F478|ANR44_CHICK Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B OS=Gallus gallus GN=ANKRD44 PE=2 SV=1

 Score = 48.5 bits (114), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 38/62 (61%)

Query: 184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
           A +  ++ KD  ALH+AA  G  E VALL+ +GA VT ++  G TP+  A  N Q +++K
Sbjct: 164 ANINAFDKKDRRALHWAAYMGHLEVVALLINHGAEVTCKDKKGYTPLHAAASNGQINIVK 223

Query: 244 LL 245
            L
Sbjct: 224 HL 225

Putative regulatory subunit of protein phosphatase 6 (PP6) that may be involved in the recognition of phosphoprotein substrates.

Gallus gallus (taxid: 9031)

>sp|Q1AAU6|ASAP1_RAT Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1 OS=Rattus norvegicus GN=Asap1 PE=2 SV=2

 Score = 48.1 bits (113), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 28/41 (68%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 234
           NT LHY + YG+ EC+ LLL +   V + N +G+T +D+AK
Sbjct: 650 NTVLHYCSMYGKPECLKLLLRSKPTVDIVNQNGETALDIAK 690

Possesses phosphatidylinositol 4,5-bisphosphate-dependent GTPase-activating protein activity for ARF1 (ADP ribosylation factor 1) and ARF5 and a lesser activity towards ARF6. May coordinate membrane trafficking with cell growth or actin cytoskeleton remodeling by binding to both SRC and PIP2. May function as a signal transduction protein involved in the differentiation of fibroblasts into adipocytes and possibly other cell types. Plays a role in ciliogenesis.

Rattus norvegicus (taxid: 10116)

>sp|Q92625|ANS1A_HUMAN Ankyrin repeat and SAM domain-containing protein 1A OS=Homo sapiens GN=ANKS1A PE=1 SV=4

 Score = 48.1 bits (113), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 2/86 (2%)

Query: 160 RMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAV 219
            +A  K D  +  +L  I  G     +   N+ + TALH AA YG  E V +LLE     
Sbjct: 118 HLAAWKGDAQIVRLL--IHQGPSHTRVNEQNNDNETALHCAAQYGHTEVVKVLLEELTDP 175

Query: 220 TLQNMDGKTPIDVAKLNSQHDVLKLL 245
           T++N   +TP+D+A L  + +V+K+L
Sbjct: 176 TMRNNKFETPLDLAALYGRLEVVKML 201

Regulator of different signaling pathways. Regulates EPHA8 receptor tyrosine kinase signaling to control cell migration and neurite retraction.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
118489177	332	unknown [Populus trichocarpa x Populus d	0.820	0.620	0.587	4e-83
359474945	358	PREDICTED: ankyrin repeat domain-contain	0.756	0.530	0.740	3e-72
255546638	345	ankyrin repeat domain protein, putative	0.721	0.524	0.720	2e-71
37625031	354	putative ankyrin-repeat protein [Vitis a	0.593	0.420	0.846	1e-70
13310811	350	ankyrin-repeat protein HBP1 [Nicotiana t	0.677	0.485	0.725	6e-70
24637568	350	ankyrin domain protein [Nicotiana tabacu	0.677	0.485	0.725	6e-70
449444443	359	PREDICTED: ankyrin repeat domain-contain	0.749	0.523	0.668	3e-69
224132484	308	predicted protein [Populus trichocarpa]	0.589	0.480	0.798	1e-68
283993229	350	ankyrin repeat-containing protein [Nicot	0.657	0.471	0.729	4e-68
327344119	371	putative PDF1-interacting protein 2, par	0.661	0.447	0.765	5e-68

>gi|118489177|gb|ABK96395.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  313 bits (802), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 165/281 (58%), Positives = 185/281 (65%), Gaps = 75/281 (26%)

Query: 46  PGVGGAA----PNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEE 101
           PG+GGAA    P+PFDFSAM+GLLNDPSIKELAEQIAKDP+FN MAEQLQKT  GA AE+
Sbjct: 52  PGLGGAAAGFPPSPFDFSAMTGLLNDPSIKELAEQIAKDPSFNQMAEQLQKTFQGATAED 111

Query: 102 SIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERM 161
           +IP FDT QYYSTMQQVMQNPQFMTMAE LG ALMQDPSMS M+ES TNP++KDQIEERM
Sbjct: 112 AIPNFDTQQYYSTMQQVMQNPQFMTMAEHLGTALMQDPSMSQMLESFTNPSQKDQIEERM 171

Query: 162 AKIKEDPSLKPILDEIESGGPSAMMKYWNDK----------------------------- 192
            +I+EDPSLKPIL+EIESGGP+AMM+YWNDK                             
Sbjct: 172 TRIREDPSLKPILEEIESGGPAAMMRYWNDKDVLQKLGEAMGLAVSEEAGTSVETSGHEE 231

Query: 193 -------DNTALHYAAGYGRKE--CVALL------------------------------- 212
                  D + +H+ A  G  E  C  +L                               
Sbjct: 232 AEEAGNEDESVVHHCASVGDVEVKCAQILLEAGATVDALDKNKNTALHYAAGYGRKECVA 291

Query: 213 --LENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 251
             LENGAAVTLQNMDGKTPIDVAKLN+Q +VLKLLEKDAFL
Sbjct: 292 LLLENGAAVTLQNMDGKTPIDVAKLNNQQEVLKLLEKDAFL 332

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359474945|ref|XP_002283498.2| PREDICTED: ankyrin repeat domain-containing protein 2-like [Vitis vinifera] gi|297744439|emb|CBI37701.3| unnamed protein product [Vitis vinifera]

 Score =  277 bits (708), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 143/193 (74%), Positives = 160/193 (82%), Gaps = 3/193 (1%)

Query: 1   MASPPTKDAPADKKAEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFSA 60
           MAS   KD PAD+K    + ++  +  S  +S S    A+AA++ PG G  A NPFDFSA
Sbjct: 1   MASNSDKDTPADEKT--GSAENSKSDSSSGESHSEQRRAAAAASVPGAGLPA-NPFDFSA 57

Query: 61  MSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQ 120
           M+GLLNDPSIKELAEQIAKDPAFN MAEQLQKT HGA  EESIPQFDT QYYSTMQQVMQ
Sbjct: 58  MTGLLNDPSIKELAEQIAKDPAFNQMAEQLQKTFHGAAVEESIPQFDTQQYYSTMQQVMQ 117

Query: 121 NPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESG 180
           NPQFMTMAERLGNALMQDPSMS M+E+L NPT KDQ+EERMA+IKEDPSLKPILDEIE+G
Sbjct: 118 NPQFMTMAERLGNALMQDPSMSSMLENLANPTHKDQLEERMARIKEDPSLKPILDEIETG 177

Query: 181 GPSAMMKYWNDKD 193
           GP+AMM+YWNDKD
Sbjct: 178 GPAAMMRYWNDKD 190

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255546638|ref|XP_002514378.1| ankyrin repeat domain protein, putative [Ricinus communis] gi|223546475|gb|EEF47974.1| ankyrin repeat domain protein, putative [Ricinus communis]

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 142/197 (72%), Positives = 155/197 (78%), Gaps = 16/197 (8%)

Query: 1   MASPPTKDAPADKK-AEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFDFS 59
           MAS   KD P+D+K A+  T   E+ SG  R   S   G               NPFDFS
Sbjct: 1   MASNSNKDVPSDEKTAKPETSSGESQSGQRRSPPSPGPGVVP------------NPFDFS 48

Query: 60  AMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHG---ANAEESIPQFDTTQYYSTMQ 116
           AM+GLLNDPSIKELAEQIAKDPAFN MAEQLQKTLHG   A AEESIPQFD+ QYYSTMQ
Sbjct: 49  AMTGLLNDPSIKELAEQIAKDPAFNQMAEQLQKTLHGVGAAAAEESIPQFDSQQYYSTMQ 108

Query: 117 QVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDE 176
           QVMQNPQFMTMAERLGNALMQDPSMS M+ESLTNP+ KDQIEERMA+IKEDPSLKPIL+E
Sbjct: 109 QVMQNPQFMTMAERLGNALMQDPSMSQMLESLTNPSHKDQIEERMAQIKEDPSLKPILEE 168

Query: 177 IESGGPSAMMKYWNDKD 193
           IESGGP+AMM+YWND+D
Sbjct: 169 IESGGPAAMMRYWNDQD 185

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|37625031|gb|AAQ96339.1| putative ankyrin-repeat protein [Vitis aestivalis]

 Score =  272 bits (695), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 127/150 (84%), Positives = 136/150 (90%), Gaps = 1/150 (0%)

Query: 44  AFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESI 103
           + PG G    NPFDFSAM+GLLNDPSIKELAEQIAKDPAFN MAEQLQKT HGA  EESI
Sbjct: 38  SVPGAG-LPTNPFDFSAMTGLLNDPSIKELAEQIAKDPAFNQMAEQLQKTFHGAAVEESI 96

Query: 104 PQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAK 163
           PQFDT QYYSTMQQVMQNPQFMTMAERLGNALMQDPSMS M+E+L NPT KDQ+EERMA+
Sbjct: 97  PQFDTQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSSMLENLANPTHKDQLEERMAR 156

Query: 164 IKEDPSLKPILDEIESGGPSAMMKYWNDKD 193
           IKEDPSLKPILDEIE+GGP+AMM+YWNDKD
Sbjct: 157 IKEDPSLKPILDEIETGGPAAMMRYWNDKD 186

Source: Vitis aestivalis

Species: Vitis aestivalis

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13310811|gb|AAK18619.1|AF352797_1 ankyrin-repeat protein HBP1 [Nicotiana tabacum] gi|238914605|gb|ACR78152.1| NTHK1-interacting protein 2 [Nicotiana tabacum]

 Score =  270 bits (689), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 127/175 (72%), Positives = 146/175 (83%), Gaps = 5/175 (2%)

Query: 33  SSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQK 92
           + +PSG +  ++    G    NPFDFSAMSGLLNDPSIKELAEQIAKDPAFN MAEQLQK
Sbjct: 31  TEAPSGEARTTSTAAAGAGLQNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNQMAEQLQK 90

Query: 93  TLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPT 152
           T  GA  EES+P FD+ QYYSTMQQVMQNPQFMTMAERLGNALMQDPSMS M+ESL+NP 
Sbjct: 91  TFQGAAVEESVPNFDSQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSGMLESLSNPA 150

Query: 153 KKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNT-----ALHYAAG 202
           +K+QIEERMA+IKEDPSLKPIL+EIESGGP+AMM+YWND++       A+ +AAG
Sbjct: 151 QKEQIEERMARIKEDPSLKPILEEIESGGPAAMMRYWNDQETLKKIGEAMGFAAG 205

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24637568|gb|AAN63819.1| ankyrin domain protein [Nicotiana tabacum]

 Score =  269 bits (688), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 127/175 (72%), Positives = 146/175 (83%), Gaps = 5/175 (2%)

Query: 33  SSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQK 92
           + +PSG +  ++    G    NPFDFSAMSGLLNDPSIKELAEQIAKDPAFN MAEQLQK
Sbjct: 31  TEAPSGEARTTSTAAAGAGLQNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNQMAEQLQK 90

Query: 93  TLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPT 152
           T  GA  EES+P FD+ QYYSTMQQVMQNPQFMTMAERLGNALMQDPSMS M+ESL+NP 
Sbjct: 91  TFQGAAVEESVPNFDSQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSGMLESLSNPA 150

Query: 153 KKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNT-----ALHYAAG 202
           +K+QIEERMA+IKEDPSLKPIL+EIESGGP+AMM+YWND++       A+ +AAG
Sbjct: 151 QKEQIEERMARIKEDPSLKPILEEIESGGPAAMMRYWNDQETLKKIGEAMGFAAG 205

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444443|ref|XP_004139984.1| PREDICTED: ankyrin repeat domain-containing protein 2-like [Cucumis sativus] gi|449475676|ref|XP_004154520.1| PREDICTED: ankyrin repeat domain-containing protein 2-like [Cucumis sativus]

 Score =  267 bits (683), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 131/196 (66%), Positives = 150/196 (76%), Gaps = 8/196 (4%)

Query: 6   TKDAPADKK--------AEGSTPKSEATSGSVRDSSSSPSGASAASAFPGVGGAAPNPFD 57
           TKD  AD+K        A+  T KSEA+      +   P       A P  G   PNPFD
Sbjct: 5   TKDVAADEKTALSETQSAKSETSKSEASKSETSSAEQQPDKPKPTPAAPHEGEFPPNPFD 64

Query: 58  FSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQ 117
           FSAM+GLLNDPSI+ELA QIAKDPAFN MA QLQKT  GA+A++S PQFDT QYYSTMQQ
Sbjct: 65  FSAMTGLLNDPSIQELASQIAKDPAFNQMASQLQKTFQGASAQQSTPQFDTQQYYSTMQQ 124

Query: 118 VMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEI 177
           VMQNPQFMTMAERLGNALMQDPSMS M+E+  NP+ K+Q+EERMA+IKEDPSLKPILDEI
Sbjct: 125 VMQNPQFMTMAERLGNALMQDPSMSSMLETFANPSNKEQLEERMAQIKEDPSLKPILDEI 184

Query: 178 ESGGPSAMMKYWNDKD 193
           E+GGP+AMM+YWND+D
Sbjct: 185 ETGGPAAMMRYWNDRD 200

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224132484|ref|XP_002328292.1| predicted protein [Populus trichocarpa] gi|222837807|gb|EEE76172.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (677), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 123/154 (79%), Positives = 138/154 (89%), Gaps = 6/154 (3%)

Query: 40  SAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANA 99
           SAA+ FP      PNPFDFSAM+GLLNDPSIKELAEQI+KDP+FN MAEQLQKT  GA A
Sbjct: 1   SAAAGFP------PNPFDFSAMTGLLNDPSIKELAEQISKDPSFNQMAEQLQKTFQGAPA 54

Query: 100 EESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEE 159
           E++IP FDT QYYSTMQQVMQNPQFMTMAERLGNALMQDPSMS M+ES +NP++KDQIEE
Sbjct: 55  EDAIPNFDTQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSQMLESFSNPSQKDQIEE 114

Query: 160 RMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKD 193
           RM +I+EDPSLKPIL+EIESGGP+AMM+YWNDKD
Sbjct: 115 RMTRIREDPSLKPILEEIESGGPAAMMRYWNDKD 148

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|283993229|gb|ADB57050.1| ankyrin repeat-containing protein [Nicotiana tabacum]

 Score =  263 bits (673), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 124/170 (72%), Positives = 141/170 (82%), Gaps = 5/170 (2%)

Query: 38  GASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGA 97
           G +  ++    G    NPFDFSAMSGLLNDPSIKELAEQI KDPAFN MAEQLQKT  GA
Sbjct: 36  GEARTTSTAAAGAGLQNPFDFSAMSGLLNDPSIKELAEQITKDPAFNQMAEQLQKTFQGA 95

Query: 98  NAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQI 157
             EES+P FD+ QYYSTMQQVMQNPQFMTMAERLGNALMQDPSMS M+ESL+NP +K+QI
Sbjct: 96  AVEESVPNFDSQQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSGMLESLSNPAQKEQI 155

Query: 158 EERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNT-----ALHYAAG 202
           EERMA+IKEDPSLKPIL+EIESGGP+AMM+YWND++       A+ +AAG
Sbjct: 156 EERMARIKEDPSLKPILEEIESGGPAAMMRYWNDQETLKKIGEAMGFAAG 205

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|327344119|gb|AEA50964.1| putative PDF1-interacting protein 2, partial [Gossypium barbadense]

 Score =  263 bits (672), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 127/166 (76%), Positives = 140/166 (84%)

Query: 28  SVRDSSSSPSGASAASAFPGVGGAAPNPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMA 87
           S   S  + +GA   +A PG G   PNPFDFSAMSGLLNDPSIKELAEQIAKDP+FN MA
Sbjct: 46  STGGSQPAQAGAFPPNAMPGPGFVPPNPFDFSAMSGLLNDPSIKELAEQIAKDPSFNQMA 105

Query: 88  EQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMES 147
           EQ  KT  GA AEE+ PQFD  QYYSTMQQVMQNPQFMTMAERLGNALMQDP+MS M++S
Sbjct: 106 EQPTKTFQGAAAEETTPQFDPQQYYSTMQQVMQNPQFMTMAERLGNALMQDPAMSTMLDS 165

Query: 148 LTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKD 193
           L NP +KDQIEERMA+IKEDPSLKPIL+EIESGGP+AMM+YWNDKD
Sbjct: 166 LANPQQKDQIEERMARIKEDPSLKPILEEIESGGPAAMMRYWNDKD 211

Source: Gossypium barbadense

Species: Gossypium barbadense

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2827572	344	AKR2B "ankyrin repeat-containi	0.625	0.456	0.637	7.6e-74
UNIPROTKB|F1MPD8	259	LOC516896 "Uncharacterized pro	0.390	0.378	0.346	2.4e-05
DICTYBASE|DDB_G0276811	911	DDB_G0276811 "ankyrin repeat-c	0.227	0.062	0.456	4.7e-05
DICTYBASE|DDB_G0280923	93	DDB_G0280923 "ankyrin repeat-c	0.326	0.881	0.302	4.8e-05
TAIR|locus:2098999	471	AT3G58760 [Arabidopsis thalian	0.466	0.248	0.333	5.7e-05
UNIPROTKB|Q07DZ7	474	ASZ1 "Ankyrin repeat, SAM and	0.258	0.137	0.430	5.8e-05
UNIPROTKB|F1RZ13	1153	ANKS1A "Uncharacterized protei	0.322	0.070	0.369	8.2e-05
UNIPROTKB|Q09YK6	477	ASZ1 "Ankyrin repeat, SAM and	0.203	0.106	0.509	0.00017
UNIPROTKB|F1SQT7	209	F1SQT7 "Uncharacterized protei	0.223	0.267	0.428	0.0002
UNIPROTKB|Q2KI59	151	PSMD10 "Proteasome (Prosome, m	0.239	0.397	0.421	0.00024

TAIR|locus:2827572 AKR2B "ankyrin repeat-containing 2B" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 7.6e-74, Sum P(2) = 7.6e-74
 Identities = 102/160 (63%), Positives = 122/160 (76%)

Query:    54 NPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYS 113
             N FDFS M+G+LNDPSIKELAEQIAKDP+FN +AEQLQ+++   + E  +P FD  QY  
Sbjct:    49 NAFDFSGMAGILNDPSIKELAEQIAKDPSFNQLAEQLQRSVPTGSHEGGLPNFDPQQYMQ 108

Query:   114 TMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPI 173
             TMQQVM+NP+F TMAERLGNAL+QDP MS  +E+L NP   +Q  ERMA++KEDP LKPI
Sbjct:   109 TMQQVMENPEFRTMAERLGNALVQDPQMSPFLEALGNPAASEQFAERMAQMKEDPELKPI 168

Query:   174 LDEIESGGPSAMMKYWNDKDNTA-LHYAAGY--GRKECVA 210
             L EI++GGPSAMMKYWNDKD  A L  A G   G  + VA
Sbjct:   169 LAEIDAGGPSAMMKYWNDKDVLAKLGEAMGIAVGADQTVA 208

GO:0005737 "cytoplasm" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|F1MPD8 LOC516896 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 120 (47.3 bits), Expect = 2.4e-05, P = 2.4e-05
 Identities = 35/101 (34%), Positives = 53/101 (52%)

Query:   146 ESLTNPT-KKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYG 204
             E+ TN    K      +A  K D  +  IL  I  G   + +   N+++ TALH AA YG
Sbjct:    43 EASTNVADNKGYFPIHLAAWKGDVEIVKIL--IHHGPSHSRVNEQNNENETALHCAAQYG 100

Query:   205 RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
               E VA+LLE     T++N   +TP+D+A L  +  V+K++
Sbjct:   101 HSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMI 141

GO:0046875 "ephrin receptor binding" evidence=IEA

DICTYBASE|DDB_G0276811 DDB_G0276811 "ankyrin repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 125 (49.1 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 26/57 (45%), Positives = 38/57 (66%)

Query:   190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
             ++K  TALHYAA Y   ECV  L  NGA++ L+   GKTP+++A+L +   V+ +LE
Sbjct:   252 DNKGYTALHYAAFYNLLECVKFLKNNGASLELRENTGKTPLNMARLRNLTHVILVLE 308

GO:0003677 "DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0280923 DDB_G0280923 "ankyrin repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 100 (40.3 bits), Expect = 4.8e-05, P = 4.8e-05
 Identities = 26/86 (30%), Positives = 47/86 (54%)

Query:   162 AKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTL 221
             AK   +  +K ++ E    GPS+++ Y +    T LH AA +G +    +LL+ GA+  +
Sbjct:    12 AKSGNEELVKSLIAE----GPSSILDYKDRSGFTPLHMAAMFGHQNICTILLQAGASNDI 67

Query:   222 QNMDGKTPIDVAKLNSQHDVLKLLEK 247
             + +D +T  DVAK  +  + +K  +K
Sbjct:    68 KTVDDETACDVAKTVTLGNFIKNFKK 93

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2098999 AT3G58760 [Arabidopsis thaliana (taxid:3702)]

 Score = 121 (47.7 bits), Expect = 5.7e-05, P = 5.7e-05
 Identities = 42/126 (33%), Positives = 60/126 (47%)

Query:   130 RLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKP--ILDEIESGGPSAMMK 187
             +LG      P     +++LT     D      A I  DP+++   + +E +  G + M+ 
Sbjct:    12 KLGRQSSLAPESRTPIDTLTEDEDDDLAAAATAGIG-DPTIRLMYLANEGDIDGINKMLD 70

Query:   188 Y-----WNDKD-NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV 241
                   + D D  TALH AA  GR + V LLL  GA V  ++  G TP+  A     HDV
Sbjct:    71 SGTNVDYRDIDARTALHVAACQGRTDVVELLLSRGAKVDTKDRWGSTPLADAVYYKNHDV 130

Query:   242 LKLLEK 247
             +KLLEK
Sbjct:   131 IKLLEK 136

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0009966 "regulation of signal transduction" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004712 "protein serine/threonine/tyrosine kinase activity" evidence=ISS

UNIPROTKB|Q07DZ7 ASZ1 "Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1" [Ornithorhynchus anatinus (taxid:9258)]

 Score = 121 (47.7 bits), Expect = 5.8e-05, P = 5.8e-05
 Identities = 28/65 (43%), Positives = 37/65 (56%)

Query:   181 GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHD 240
             G  A +   +D   TAL +AA +G K  V  LLE GA  TLQ  DGKTP ++AK N   +
Sbjct:   168 GHGAEINAQDDNGYTALAWAARHGHKTTVLKLLELGADKTLQTQDGKTPAEIAKRNKHPE 227

Query:   241 VLKLL 245
             +  +L
Sbjct:   228 LFSML 232

GO:0007140 "male meiosis" evidence=ISS

GO:0007283 "spermatogenesis" evidence=ISS

GO:0034587 "piRNA metabolic process" evidence=ISS

GO:0043046 "DNA methylation involved in gamete generation" evidence=ISS

GO:0071546 "pi-body" evidence=ISS

UNIPROTKB|F1RZ13 ANKS1A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 124 (48.7 bits), Expect = 8.2e-05, P = 8.2e-05
 Identities = 31/84 (36%), Positives = 49/84 (58%)

Query:   163 KIKEDPSLKPILDEIESGGP-SAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTL 221
             K+ E  +L+  + E++  GP    +   N+ + TALH AA YG  E V +LLE     T+
Sbjct:   139 KVNEQNALE--IKELKKYGPFDTYLNAKNNDNETALHCAAQYGHTEVVKVLLEELTDPTM 196

Query:   222 QNMDGKTPIDVAKLNSQHDVLKLL 245
             +N   +TP+D+A L  + DV+K+L
Sbjct:   197 RNNKFETPLDLAALYGRLDVVKML 220

GO:0048013 "ephrin receptor signaling pathway" evidence=IEA

GO:0046875 "ephrin receptor binding" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0016322 "neuron remodeling" evidence=IEA

GO:0006929 "substrate-dependent cell migration" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q09YK6 ASZ1 "Ankyrin repeat, SAM and basic leucine zipper domain-containing protein 1" [Ateles geoffroyi (taxid:9509)]

 Score = 117 (46.2 bits), Expect = 0.00017, P = 0.00017
 Identities = 26/51 (50%), Positives = 31/51 (60%)

Query:   195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
             TAL +AA  GRK  V  LLE GA   LQ  DGK P ++AK N  H++  LL
Sbjct:   186 TALTWAARQGRKSIVLKLLELGANKMLQTKDGKLPSEIAKRNKHHEIFSLL 236

GO:0007140 "male meiosis" evidence=ISS

GO:0007283 "spermatogenesis" evidence=ISS

GO:0034587 "piRNA metabolic process" evidence=ISS

GO:0043046 "DNA methylation involved in gamete generation" evidence=ISS

GO:0071546 "pi-body" evidence=ISS

UNIPROTKB|F1SQT7 F1SQT7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 110 (43.8 bits), Expect = 0.00020, P = 0.00020
 Identities = 24/56 (42%), Positives = 37/56 (66%)

Query:   190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
             N+++ TALH AA YG  E VA+LLE     T++N   +TP+D+A L  +  V+K++
Sbjct:   104 NNENETALHCAAQYGHSEVVAVLLEELTDPTIRNSKLETPLDLAALYGRLRVVKMI 159

GO:0046875 "ephrin receptor binding" evidence=IEA

UNIPROTKB|Q2KI59 PSMD10 "Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 10" [Bos taurus (taxid:9913)]

 Score = 103 (41.3 bits), Expect = 0.00024, P = 0.00024
 Identities = 27/64 (42%), Positives = 35/64 (54%)

Query:   190 NDKDNTA---LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV-LKLL 245
             NDKD+     LH AA  GR E V  LL  GA V   N +G TP+  A   ++H++ + LL
Sbjct:    67 NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 126

Query:   246 EKDA 249
             E  A
Sbjct:   127 EGGA 130

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	3e-14
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	9e-13
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-12
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	1e-12
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-09
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	3e-09
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-08
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	3e-07
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	9e-07
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	1e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	2e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-04
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	2e-04
smart00248	30	smart00248, ANK, ankyrin repeats	3e-04
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	5e-04
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	0.001
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	0.002
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	0.003

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 67.0 bits (164), Expect = 3e-14
 Identities = 24/56 (42%), Positives = 35/56 (62%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +   NT LH AA  G  + V LLL++GA V  ++ DG+TP+ +A  N   +V+KLL
Sbjct: 70  DKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 63.2 bits (154), Expect = 9e-13
 Identities = 25/56 (44%), Positives = 35/56 (62%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           ++   T LH AA  G  E V LLLENGA V  ++ DG+TP+ +A  N   +++KLL
Sbjct: 4   DEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 62.8 bits (153), Expect = 1e-12
 Identities = 26/56 (46%), Positives = 33/56 (58%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           ++   T LH AA  G  E V LLLE GA V  ++ DG TP+ +A  N   DV+KLL
Sbjct: 37  DNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLL 92

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 61.9 bits (151), Expect = 1e-12
 Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LLEKDA 249
           +TALH AA  G  E V LLLE+GA V  ++ DG T + +A  N   +++K LLE  A
Sbjct: 29  DTALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGA 85

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 52.2 bits (126), Expect = 1e-09
 Identities = 24/52 (46%), Positives = 29/52 (55%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            TALH AA  GR E V  LLE G  +   + DG T + +A  N   +VLKLL
Sbjct: 2   RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLL 53

Length = 54

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 51.6 bits (124), Expect = 3e-09
 Identities = 19/46 (41%), Positives = 26/46 (56%)

Query: 188 YWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 233
             +   NT LH AA YG  E V  LL+ G  + L++ DG T +D+A
Sbjct: 11  ATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 248
           ++  NT LH+AA  G  + V LLLE GA    +N  G T +D A  N + +++KLL   
Sbjct: 144 DEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK 202

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 22/56 (39%), Positives = 29/56 (51%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +    T LHYA      E V  LL+ GA   L N  G TP+ +A LN+  ++ KLL
Sbjct: 189 DVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLL 244

Length = 422

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 16/30 (53%), Positives = 18/30 (60%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQN 223
           NT LH AA  G  E V LLLE GA V  ++
Sbjct: 3   NTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 45.7 bits (109), Expect = 9e-07
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQN 223
           +   NTALH AA  G  E V LLLE+GA + L++
Sbjct: 58  DKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 23/51 (45%), Positives = 33/51 (64%)

Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           T LH A   G  + V +LLE GA  TL + DGKTP+++A+ N   +V++LL
Sbjct: 117 TPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Length = 664

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 45.0 bits (106), Expect = 2e-05
 Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 1/63 (1%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LLEKD 248
           + +  T LHYA   G  E + +L E GA V +++ +G  PI +A  ++  D++K LLEK 
Sbjct: 121 DAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG 180

Query: 249 AFL 251
           A+ 
Sbjct: 181 AYA 183

Length = 434

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           LH AA  G  E V LLLE GA V L + D  T + +A  N   +++KLL
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLL 47

Length = 91

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 15/26 (57%), Positives = 17/26 (65%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAV 219
           NT LH AA  G  E V LLLE+GA +
Sbjct: 3   NTPLHLAARNGNLELVKLLLEHGADI 28

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 41.3 bits (96), Expect = 2e-04
 Identities = 25/119 (21%), Positives = 42/119 (35%), Gaps = 13/119 (10%)

Query: 140 SMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDN----- 194
           +   +   L        ++      K+      +     +     ++K   D+       
Sbjct: 12  NKCFLDLLLVALLLLLSLDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDL 71

Query: 195 ---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA-----KLNSQHDVLKLL 245
                LH AA  G  + V LLL +GA V  ++ DG TP+ +A           +V KLL
Sbjct: 72  DGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLL 130

Length = 235

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 36.8 bits (86), Expect = 3e-04
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 192 KDNTALHYAAGYGRKECVALLLENGAAVTL 221
              T LH AA  G  E V LLL+ GA +  
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 36.8 bits (86), Expect = 5e-04
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 188 YWNDKDNTALHYAAGYGRKECVALLL 213
             ++  NTALH AA  G  E + LLL
Sbjct: 29  RTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 39.6 bits (92), Expect = 0.001
 Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 4/61 (6%)

Query: 188 YWNDKD---NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 244
           Y N KD    + LH AA YG   C+ LL+++G  +  +  +G TP+  A ++++   ++L
Sbjct: 182 YANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNR-SAIEL 240

Query: 245 L 245
           L
Sbjct: 241 L 241

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 38.3 bits (88), Expect = 0.002
 Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 8/64 (12%)

Query: 190 NDKDNTALHYAAGYGRK-----ECVALLLENGA---AVTLQNMDGKTPIDVAKLNSQHDV 241
           +   +T LH AA  G       E   LLLE GA      L++ DG TP+  A LN   D+
Sbjct: 103 DADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADI 162

Query: 242 LKLL 245
           ++LL
Sbjct: 163 VELL 166

Length = 235

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 3/58 (5%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP--IDVAKLNSQHDVLKLL 245
           +  +N+ LH+A  +  K  V +LLENGA+   ++  G TP  I V      +D+LKLL
Sbjct: 198 DKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISVGYCKD-YDILKLL 254

Length = 477

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.74
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.7
PHA02791	284	ankyrin-like protein; Provisional	99.67
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.67
PHA02795	437	ankyrin-like protein; Provisional	99.67
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.67
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.66
KOG0508	615	consensus Ankyrin repeat protein [General function	99.66
PHA02791	284	ankyrin-like protein; Provisional	99.66
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.64
PHA03100	480	ankyrin repeat protein; Provisional	99.63
PHA02989	494	ankyrin repeat protein; Provisional	99.63
PHA02743	166	Viral ankyrin protein; Provisional	99.62
PHA02874	434	ankyrin repeat protein; Provisional	99.62
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.61
PHA02875	413	ankyrin repeat protein; Provisional	99.61
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.61
PHA02736	154	Viral ankyrin protein; Provisional	99.61
PHA03095	471	ankyrin-like protein; Provisional	99.6
PHA02917	661	ankyrin-like protein; Provisional	99.6
PHA02859	209	ankyrin repeat protein; Provisional	99.59
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.58
PHA02875	413	ankyrin repeat protein; Provisional	99.58
PHA02878	477	ankyrin repeat protein; Provisional	99.57
PHA02741	169	hypothetical protein; Provisional	99.57
KOG0508	615	consensus Ankyrin repeat protein [General function	99.57
PHA03100	480	ankyrin repeat protein; Provisional	99.57
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.57
PHA02798	489	ankyrin-like protein; Provisional	99.57
PHA02946	446	ankyin-like protein; Provisional	99.57
PHA02874	434	ankyrin repeat protein; Provisional	99.55
KOG0514	452	consensus Ankyrin repeat protein [General function	99.55
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.55
PHA02989	494	ankyrin repeat protein; Provisional	99.54
PHA02798	489	ankyrin-like protein; Provisional	99.54
PHA02878	477	ankyrin repeat protein; Provisional	99.53
KOG0514	452	consensus Ankyrin repeat protein [General function	99.53
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.52
PHA02741	169	hypothetical protein; Provisional	99.52
PHA03095	471	ankyrin-like protein; Provisional	99.52
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.51
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.5
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.49
PHA02859	209	ankyrin repeat protein; Provisional	99.48
PHA02946	446	ankyin-like protein; Provisional	99.47
KOG0510	929	consensus Ankyrin repeat protein [General function	99.47
PHA02884	300	ankyrin repeat protein; Provisional	99.46
PHA02743	166	Viral ankyrin protein; Provisional	99.46
KOG0510	929	consensus Ankyrin repeat protein [General function	99.46
PHA02884	300	ankyrin repeat protein; Provisional	99.45
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.44
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.43
PHA02876	682	ankyrin repeat protein; Provisional	99.43
PHA02730	672	ankyrin-like protein; Provisional	99.42
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.41
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.41
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.4
PHA02876	682	ankyrin repeat protein; Provisional	99.39
PHA02917	661	ankyrin-like protein; Provisional	99.38
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	99.38
PHA02792	631	ankyrin-like protein; Provisional	99.37
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.36
PHA02795	437	ankyrin-like protein; Provisional	99.35
PHA02736	154	Viral ankyrin protein; Provisional	99.34
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.3
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.28
PHA02730	672	ankyrin-like protein; Provisional	99.25
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.22
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.21
PF13606	30	Ank_3: Ankyrin repeat	99.21
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.2
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.17
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.16
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.16
PHA02792	631	ankyrin-like protein; Provisional	99.15
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.12
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.12
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.11
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.1
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.1
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.09
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.04
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.03
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.0
KOG0522	560	consensus Ankyrin repeat protein [General function	98.97
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.94
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	98.92
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	98.9
TIGR00870	743	trp transient-receptor-potential calcium channel p	98.9
KOG2384	223	consensus Major histocompatibility complex protein	98.85
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.83
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	98.81
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	98.73
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.71
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.69
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	98.63
KOG0783	1267	consensus Uncharacterized conserved protein, conta	98.59
PF13606	30	Ank_3: Ankyrin repeat	98.44
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.32
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	98.29
KOG0511	516	consensus Ankyrin repeat protein [General function	98.22
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.22
KOG0521	785	consensus Putative GTPase activating proteins (GAP	97.92
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	97.72
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.72
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.58
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	97.58
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	97.56
KOG2505	591	consensus Ankyrin repeat protein [General function	97.56
KOG0520	975	consensus Uncharacterized conserved protein, conta	97.46
KOG0511	516	consensus Ankyrin repeat protein [General function	97.28
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.61
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	96.52
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	96.52
KOG0522	560	consensus Ankyrin repeat protein [General function	96.44
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	96.2
KOG2384	223	consensus Major histocompatibility complex protein	94.16
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	90.17
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	88.24
KOG2505	591	consensus Ankyrin repeat protein [General function	84.26
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	84.2
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	83.28

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.74  E-value=1.2e-17  Score=125.24  Aligned_cols=109  Identities=20%  Similarity=0.276  Sum_probs=93.9

Q ss_pred             ChHHHHHHHh-cCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCC
Q 025512          138 DPSMSHMMES-LTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENG  216 (251)
Q Consensus       138 ~~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~G  216 (251)
                      +..+..++.. +.+++.....+.+..+++......++..+|+.+|  +.++.+|..|.||||.|+.-|.++++++|+..|
T Consensus        85 ~evVk~Ll~r~~advna~tn~G~T~LHyAagK~r~eIaqlLle~g--a~i~~kD~~~qtplHRAAavGklkvie~Li~~~  162 (226)
T KOG4412|consen   85 DEVVKELLNRSGADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKG--ALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQG  162 (226)
T ss_pred             HHHHHHHhcCCCCCcceecCCCcceehhhhcCChhhHHHHHHhcC--CCCcccccccCchhHHHHhccchhhHHHHHhcC
Confidence            3566666666 7788887777777778888888888888889888  678888999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          217 AAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       217 ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      +.+|.+|..|+||||+|...|+.++..+|+++
T Consensus       163 a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~  194 (226)
T KOG4412|consen  163 APLNTQDKYGFTPLHHALAEGHPDVAVLLVRA  194 (226)
T ss_pred             CCCCcccccCccHHHHHHhccCchHHHHHHHh
Confidence            99999999999999999888899998888875

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.70  E-value=9.4e-17  Score=120.43  Aligned_cols=97  Identities=29%  Similarity=0.412  Sum_probs=80.1

Q ss_pred             CCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q 025512          151 PTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI  230 (251)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL  230 (251)
                      ++.++..+....+++...+..++++.|+... .+++|..+..|+|+||||+..|+.+|+++|+++|+.++++|..|.|||
T Consensus        65 ~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~-~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtpl  143 (226)
T KOG4412|consen   65 PDDKDDAGWTPLHIAASNGNDEVVKELLNRS-GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPL  143 (226)
T ss_pred             CCCccccCCchhhhhhhcCcHHHHHHHhcCC-CCCcceecCCCcceehhhhcCChhhHHHHHHhcCCCCcccccccCchh
Confidence            3444444444444444444667777777763 378999999999999999999999999999999999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhC
Q 025512          231 DVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       231 ~~A~~~g~~~iv~~Ll~~  248 (251)
                      |-|+..|..+++++|+..
T Consensus       144 HRAAavGklkvie~Li~~  161 (226)
T KOG4412|consen  144 HRAAAVGKLKVIEYLISQ  161 (226)
T ss_pred             HHHHhccchhhHHHHHhc
Confidence            999999999999999874

>PHA02791 ankyrin-like protein; Provisional

Probab=99.67  E-value=1.4e-15  Score=126.64  Aligned_cols=137  Identities=14%  Similarity=0.022  Sum_probs=92.4

Q ss_pred             hchHHHHHHHHcCCcchHHHHHhhhhcc-------CChHHHHHHHhcCCCCccCcHHH-HHHHHhcCCCcHHHHHHHHhc
Q 025512          109 TQYYSTMQQVMQNPQFMTMAERLGNALM-------QDPSMSHMMESLTNPTKKDQIEE-RMAKIKEDPSLKPILDEIESG  180 (251)
Q Consensus       109 ~g~~~l~~~l~~~~~~~~~a~~~~~~ll-------~~~~~~~ll~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~L~~~  180 (251)
                      .++.+++..|+..++.+...+..|...+       +...+..+++.+++.+..+..+. ....++...+..+++++|+..
T Consensus        71 ~g~~eiV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gadin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~  150 (284)
T PHA02791         71 LEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSE  150 (284)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhc
Confidence            3455555555555544333322222111       11456667777777765554331 222223333445667777765


Q ss_pred             CCCccccccC-CCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH-HHHHHHcCCHHHHHHHHhCC
Q 025512          181 GPSAMMKYWN-DKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP-IDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       181 ~~~~~v~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp-L~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +.. .   .| ..|+||||+|+..|+.++|++|+++||+++.+|..|+|| ||+|+..|+.++|++|+++.
T Consensus       151 ~~~-~---~d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~G  217 (284)
T PHA02791        151 IPS-T---FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYD  217 (284)
T ss_pred             CCc-c---cccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCC
Confidence            421 1   22 358999999999999999999999999999999999987 99999999999999999864

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.67  E-value=1.7e-16  Score=99.04  Aligned_cols=54  Identities=44%  Similarity=0.649  Sum_probs=46.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 025512          193 DNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE  246 (251)
Q Consensus       193 G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  246 (251)
                      |+||||+|+..|+.+++++|+++|+|++.+|.+|+||||+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            789999999999999999999999999999999999999999999999999986

...

>PHA02795 ankyrin-like protein; Provisional

Probab=99.67  E-value=9.7e-16  Score=132.85  Aligned_cols=139  Identities=16%  Similarity=0.137  Sum_probs=103.0

Q ss_pred             hchHHHHHHHHcCCcchHHHHH---hhhhc-cC-ChHHHHHHHhcCCCCccCcHH------HHHHHHhcCCCcHHHHHHH
Q 025512          109 TQYYSTMQQVMQNPQFMTMAER---LGNAL-MQ-DPSMSHMMESLTNPTKKDQIE------ERMAKIKEDPSLKPILDEI  177 (251)
Q Consensus       109 ~g~~~l~~~l~~~~~~~~~a~~---~~~~l-l~-~~~~~~ll~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~L  177 (251)
                      .++.++++.|+.+|++++....   ..... .. ...+..++..+++........      .............+++++|
T Consensus       128 ~n~~eiV~~LI~~GADIn~~~~~t~lh~A~~~~~~eIVk~Lls~Ga~~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~L  207 (437)
T PHA02795        128 YVEIDIVDFMVDHGAVIYKIECLNAYFRGICKKESSVVEFILNCGIPDENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLC  207 (437)
T ss_pred             CCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCcccccccchhhhhhccchhHHHHhcCHHHHHHHH
Confidence            5788999999999998754211   11111 11 234555566665433222111      1112223345678899999


Q ss_pred             HhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--------CHHHHHHHHhCC
Q 025512          178 ESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS--------QHDVLKLLEKDA  249 (251)
Q Consensus       178 ~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g--------~~~iv~~Ll~~~  249 (251)
                      +..|  +++|.+|..|+||||+|+..|+.+++++|+++||+++.+|..|+||||+|+..|        +.+++++|++++
T Consensus       208 Is~G--ADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~g  285 (437)
T PHA02795        208 IPYI--EDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREP  285 (437)
T ss_pred             HhCc--CCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCC
Confidence            9987  788999999999999999999999999999999999999999999999999988        468999999864

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.67  E-value=8.8e-17  Score=100.92  Aligned_cols=51  Identities=43%  Similarity=0.637  Sum_probs=34.0

Q ss_pred             CccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 025512          183 SAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA  233 (251)
Q Consensus       183 ~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  233 (251)
                      ..+++.+|..|.||||+||..|+.++|++|++.|+|++.+|..|+||||+|
T Consensus         6 ~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    6 PADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             cCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            468899999999999999999999999999999999999999999999997

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.66  E-value=7.9e-16  Score=118.90  Aligned_cols=122  Identities=18%  Similarity=0.269  Sum_probs=110.5

Q ss_pred             cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCcc
Q 025512          106 FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAM  185 (251)
Q Consensus       106 ~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~  185 (251)
                      .|+.|++.+|++...           |..    |.+..+|+.++++..-+.+.+....++..+++..++++|+..+  .+
T Consensus       156 ~De~GfTpLiWAaa~-----------G~i----~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r~--vd  218 (296)
T KOG0502|consen  156 CDEFGFTPLIWAAAK-----------GHI----PVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTRE--VD  218 (296)
T ss_pred             ccccCchHhHHHHhc-----------Cch----HHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhcC--CC
Confidence            788999999887555           566    8899999999999999999999889999999999999999987  67


Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 025512          186 MKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL  245 (251)
Q Consensus       186 v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~L  245 (251)
                      ||..|-+|-|||-+|++.+|.+||+.||..|||++..+..|++++.+|+..|+. +|+..
T Consensus       219 VNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqv  277 (296)
T KOG0502|consen  219 VNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQV  277 (296)
T ss_pred             cceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHH
Confidence            888999999999999999999999999999999999999999999999999998 55433

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.66  E-value=1.9e-16  Score=134.30  Aligned_cols=109  Identities=18%  Similarity=0.185  Sum_probs=87.0

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      ..++.+++.+++.|.......+....++..+..+++++|++++  ++.+..|..|+|.||+||+.||.+|+++|++.|||
T Consensus        98 ~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~g--ad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gAD  175 (615)
T KOG0508|consen   98 EVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHG--ADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGAD  175 (615)
T ss_pred             HHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcC--CCCcccccCCCeeEEeeeccCchHHHHHHHHhCCC
Confidence            4666777888877776655555444555555677777777776  66777888899999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          219 VTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       219 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +|.++..|+|+||.|++.|+.+|+++|+++.
T Consensus       176 vn~ks~kGNTALH~caEsG~vdivq~Ll~~g  206 (615)
T KOG0508|consen  176 VNAKSYKGNTALHDCAESGSVDIVQLLLKHG  206 (615)
T ss_pred             cchhcccCchHHHhhhhcccHHHHHHHHhCC
Confidence            9999999999999999999999999888864

>PHA02791 ankyrin-like protein; Provisional

Probab=99.66  E-value=2.2e-15  Score=125.38  Aligned_cols=105  Identities=11%  Similarity=0.021  Sum_probs=54.5

Q ss_pred             HHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCc-hHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          140 SMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDN-TALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       140 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~-TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      .+..++..+++++..+..+.+...++...+..+++++|+..+  .+++.++..|+ ||||+|+..|+.++|++|+++|.+
T Consensus        76 iV~lLL~~Gadvn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~g--adin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~  153 (284)
T PHA02791         76 IVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKN--WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS  153 (284)
T ss_pred             HHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCc
Confidence            444445555555444333333333333333445555555554  34455555553 566666666666666666665543


Q ss_pred             CCCCC-CCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          219 VTLQN-MDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       219 ~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      .  .| ..|+||||+|+..|+.+++++|+++
T Consensus       154 ~--~d~~~g~TpLh~Aa~~g~~eiv~lLL~~  182 (284)
T PHA02791        154 T--FDLAILLSCIHITIKNGHVDMMILLLDY  182 (284)
T ss_pred             c--cccccCccHHHHHHHcCCHHHHHHHHHC
Confidence            2  12 2356666666666666666666654

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.64  E-value=1.2e-15  Score=133.89  Aligned_cols=167  Identities=18%  Similarity=0.217  Sum_probs=121.4

Q ss_pred             HHhcCchHHHHHHHHHh-hhcCCCCC-CCCCc---cchhchHHHHHHHHcCCcchHHH------------HHhhhhccCC
Q 025512           76 QIAKDPAFNSMAEQLQK-TLHGANAE-ESIPQ---FDTTQYYSTMQQVMQNPQFMTMA------------ERLGNALMQD  138 (251)
Q Consensus        76 ~i~~n~~f~~i~~~l~~-~~~~~~~~-~~~~~---~~~~g~~~l~~~l~~~~~~~~~a------------~~~~~~ll~~  138 (251)
                      ...++..+..+.+++.. +.+...++ .+.--   ...++..++++.|++++++++..            .+.|..    
T Consensus        50 ~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadvn~~gG~l~stPLHWAar~G~~----  125 (600)
T KOG0509|consen   50 KATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRLDVARYLISHGADVNAIGGVLGSTPLHWAARNGHI----  125 (600)
T ss_pred             hHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCccccCCCCCCCcchHHHHcCcH----
Confidence            34557788888888777 54421111 11111   11344556677777777665533            222333    


Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      ..+..+++.++++...+..+....+++...+...++.+|+..+  .++|.+|.+|+||||+|+.+|+...+.+||+.|+.
T Consensus       126 ~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~--~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~  203 (600)
T KOG0509|consen  126 SVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKG--ADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGAS  203 (600)
T ss_pred             HHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhc--ccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhccc
Confidence            6788889999999988888877666666666666666677766  78889999999999999999998889999999999


Q ss_pred             CCCCC-CCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          219 VTLQN-MDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       219 ~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      +...| .+|.||||||+..|+..++.+|++.
T Consensus       204 ~~~~d~~~g~TpLHwa~~~gN~~~v~Ll~~g  234 (600)
T KOG0509|consen  204 LLLTDDNHGNTPLHWAVVGGNLTAVKLLLEG  234 (600)
T ss_pred             ccccccccCCchHHHHHhcCCcceEehhhhc
Confidence            99988 8999999999999999998866654

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.63  E-value=7e-15  Score=131.78  Aligned_cols=137  Identities=21%  Similarity=0.247  Sum_probs=102.4

Q ss_pred             hHHHHHHHHcCCcchHHHHHhhhhcc-------CChHHHHHHHhcCCCCccCcHH------HHHHHHhcCCCc--HHHHH
Q 025512          111 YYSTMQQVMQNPQFMTMAERLGNALM-------QDPSMSHMMESLTNPTKKDQIE------ERMAKIKEDPSL--KPILD  175 (251)
Q Consensus       111 ~~~l~~~l~~~~~~~~~a~~~~~~ll-------~~~~~~~ll~~~~~~~~~~~~~------~~~~~~~~~~~~--~~~l~  175 (251)
                      ..++++.|++.++.+...+..|...+       +...+..+++.+++++..+..+      ......+.....  .++++
T Consensus       155 ~~~iv~~Ll~~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~  234 (480)
T PHA03100        155 DLKILKLLIDKGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVN  234 (480)
T ss_pred             hHHHHHHHHHCCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHH
Confidence            56667777776665544333322211       1246677788888877654332      222222222333  77888


Q ss_pred             HHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          176 EIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       176 ~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +|+..|  .+++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|.||||+|+..++.+++++|+++.
T Consensus       235 ~Ll~~g--~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g  306 (480)
T PHA03100        235 YLLSYG--VPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNG  306 (480)
T ss_pred             HHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcC
Confidence            888887  678889999999999999999999999999999999999999999999999999999999999864

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.63  E-value=5.4e-15  Score=133.05  Aligned_cols=137  Identities=14%  Similarity=0.075  Sum_probs=97.8

Q ss_pred             chHHHHHHHHcCCcchHH-HHHhhhhcc-----------CChHHHHHHHhcCCCCccCcHHHHHHH--Hhc----CCCcH
Q 025512          110 QYYSTMQQVMQNPQFMTM-AERLGNALM-----------QDPSMSHMMESLTNPTKKDQIEERMAK--IKE----DPSLK  171 (251)
Q Consensus       110 g~~~l~~~l~~~~~~~~~-a~~~~~~ll-----------~~~~~~~ll~~~~~~~~~~~~~~~~~~--~~~----~~~~~  171 (251)
                      ++.++++.|++.++.+.. .+..+...+           .-..+..+++.+++++..+........  ...    .....
T Consensus       158 ~~~~iv~~Ll~~Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~  237 (494)
T PHA02989        158 VKKDVIKILLSFGVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEF  237 (494)
T ss_pred             CCHHHHHHHHHcCCCccccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccch
Confidence            355666677777765543 222222211           123566677788877765532222111  111    12345


Q ss_pred             HHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          172 PILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       172 ~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .++.+|..+   +++|.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+..|+.++|++|++..
T Consensus       238 ~il~~l~~~---advn~~d~~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~~A~~~~~~~iv~~LL~~~  312 (494)
T PHA02989        238 KVLNFILKY---IKINKKDKKGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLTYAIKHGNIDMLNRILQLK  312 (494)
T ss_pred             HHHHHHHhC---CCCCCCCCCCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            666667665   678999999999999999999999999999999999999999999999999999999999998753

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.62  E-value=5.9e-15  Score=113.82  Aligned_cols=94  Identities=17%  Similarity=0.158  Sum_probs=81.4

Q ss_pred             ccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccC-CCCchHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHH
Q 025512          153 KKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWN-DKDNTALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPI  230 (251)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL  230 (251)
                      ..+....+.++.....+...++++|+..+  .+++.+| ..|+||||+|+..|+.+++++|+. .|++++.+|..|+|||
T Consensus        55 ~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~G--adin~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL  132 (166)
T PHA02743         55 HHGRQCTHMVAWYDRANAVMKIELLVNMG--ADINARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAY  132 (166)
T ss_pred             CCCCcHHHHHHHhCccCHHHHHHHHHHcC--CCCCCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHH
Confidence            34455667777666667777788888887  6788888 589999999999999999999995 7999999999999999


Q ss_pred             HHHHHcCCHHHHHHHHhC
Q 025512          231 DVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       231 ~~A~~~g~~~iv~~Ll~~  248 (251)
                      |+|+..++.+++++|+++
T Consensus       133 ~~A~~~~~~~iv~~Ll~~  150 (166)
T PHA02743        133 HIAYKMRDRRMMEILRAN  150 (166)
T ss_pred             HHHHHcCCHHHHHHHHHc
Confidence            999999999999999975

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.62  E-value=9.6e-15  Score=129.39  Aligned_cols=137  Identities=15%  Similarity=0.149  Sum_probs=103.0

Q ss_pred             hhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCcccc
Q 025512          108 TTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMK  187 (251)
Q Consensus       108 ~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~  187 (251)
                      ..++.++++.|+++++.......   .......+..+++.+.+++..+..+.+...++...+..+++++|+..|  .+++
T Consensus        77 ~~~~~~iv~~Ll~~g~~~~~~~~---~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~g--ad~n  151 (434)
T PHA02874         77 KIGAHDIIKLLIDNGVDTSILPI---PCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG--ADVN  151 (434)
T ss_pred             HcCCHHHHHHHHHCCCCCCcchh---ccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCC--CCCC
Confidence            45666777777776654322110   111224667777888877766554444444444445567777788876  6678


Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          188 YWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       188 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .+|..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+++++|+++.
T Consensus       152 ~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g  213 (434)
T PHA02874        152 IEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHG  213 (434)
T ss_pred             CcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            88999999999999999999999999999999999999999999999999999999999764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.61  E-value=4.2e-15  Score=102.55  Aligned_cols=74  Identities=41%  Similarity=0.518  Sum_probs=64.1

Q ss_pred             cHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          170 LKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       170 ~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ..+++++|+..+  .+++.    |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus         9 ~~~~~~~ll~~~--~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g   82 (89)
T PF12796_consen    9 NLEILKFLLEKG--ADINL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLEIVKLLLEHG   82 (89)
T ss_dssp             THHHHHHHHHTT--STTTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHCc--CCCCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            456667777765  33433    899999999999999999999999999999999999999999999999999999873

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.61  E-value=1.5e-14  Score=127.27  Aligned_cols=165  Identities=14%  Similarity=0.110  Sum_probs=109.7

Q ss_pred             CchHHHHHHHHHhhhcCCCC-CCCCCc---cchhchHHHHHHHHcCCcchHHHHHhhhhc-------cCChHHHHHHHhc
Q 025512           80 DPAFNSMAEQLQKTLHGANA-EESIPQ---FDTTQYYSTMQQVMQNPQFMTMAERLGNAL-------MQDPSMSHMMESL  148 (251)
Q Consensus        80 n~~f~~i~~~l~~~~~~~~~-~~~~~~---~~~~g~~~l~~~l~~~~~~~~~a~~~~~~l-------l~~~~~~~ll~~~  148 (251)
                      ...+..+..++..|++.... ..+...   ....+..++++.|+..++........+...       .....+..+++.+
T Consensus        12 ~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~   91 (413)
T PHA02875         12 FGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLG   91 (413)
T ss_pred             hCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHHHcC
Confidence            34566666777777662100 011111   113345566666766665433221111100       0114566667666


Q ss_pred             CCCC----ccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 025512          149 TNPT----KKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNM  224 (251)
Q Consensus       149 ~~~~----~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~  224 (251)
                      ....    ..+....+.++..+   ..+++++|+..|  ++++..+..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        92 ~~~~~~~~~~g~tpL~~A~~~~---~~~iv~~Ll~~g--ad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~  166 (413)
T PHA02875         92 KFADDVFYKDGMTPLHLATILK---KLDIMKLLIARG--ADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDC  166 (413)
T ss_pred             CcccccccCCCCCHHHHHHHhC---CHHHHHHHHhCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCC
Confidence            5432    23445555555544   457777778776  66788899999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          225 DGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       225 ~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .|+||||+|+..|+.+++++|+++.
T Consensus       167 ~g~TpL~~A~~~g~~eiv~~Ll~~g  191 (413)
T PHA02875        167 CGCTPLIIAMAKGDIAICKMLLDSG  191 (413)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHhCC
Confidence            9999999999999999999999864

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.61  E-value=1.7e-15  Score=133.02  Aligned_cols=151  Identities=19%  Similarity=0.191  Sum_probs=112.3

Q ss_pred             CchHHHHHHHHHhhhcCC-----CC-CCCCCccchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCc
Q 025512           80 DPAFNSMAEQLQKTLHGA-----NA-EESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTK  153 (251)
Q Consensus        80 n~~f~~i~~~l~~~~~~~-----~~-~~~~~~~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~  153 (251)
                      ++.+..+.+..|.|--..     .+ ..+.++.|++|++.++.+.++|..               ..++.+++.+++++.
T Consensus        42 d~~~~~~v~A~q~G~l~~v~~lve~~g~~v~~~D~~g~tlLHWAAiNNrl---------------~v~r~li~~gadvn~  106 (600)
T KOG0509|consen   42 DSSLDDIVKATQYGELETVKELVESEGESVNNPDREGVTLLHWAAINNRL---------------DVARYLISHGADVNA  106 (600)
T ss_pred             chhhhhhhhHhhcchHHHHHHHHhhcCcCCCCCCcCCccceeHHHHcCcH---------------HHHHHHHHcCCCccc
Confidence            555555555544332211     22 344455778888888888887444               566777888888887


Q ss_pred             cC-cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 025512          154 KD-QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV  232 (251)
Q Consensus       154 ~~-~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~  232 (251)
                      .+ ....+..+.+...+...++++|+++|  ++++++|.+|.||||+|++.||.-+|-+||.+|+|++.+|.+|+|||||
T Consensus       107 ~gG~l~stPLHWAar~G~~~vv~lLlqhG--Adpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmw  184 (600)
T KOG0509|consen  107 IGGVLGSTPLHWAARNGHISVVDLLLQHG--ADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMW  184 (600)
T ss_pred             cCCCCCCCcchHHHHcCcHHHHHHHHHcC--CCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHH
Confidence            65 44444444555556677777888887  7788899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHh
Q 025512          233 AKLNSQHDVLKLLEK  247 (251)
Q Consensus       233 A~~~g~~~iv~~Ll~  247 (251)
                      |+..|+...+++|++
T Consensus       185 Aaykg~~~~v~~LL~  199 (600)
T KOG0509|consen  185 AAYKGFALFVRRLLK  199 (600)
T ss_pred             HHHhcccHHHHHHHH
Confidence            999999886777765

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.61  E-value=5.7e-15  Score=112.52  Aligned_cols=134  Identities=15%  Similarity=0.056  Sum_probs=93.7

Q ss_pred             cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCcc
Q 025512          106 FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAM  185 (251)
Q Consensus       106 ~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~  185 (251)
                      .+..|.+.++.+..... ........... . +.. ..++.   ..+..+....++++.....+..+++++|+..|  .+
T Consensus        13 ~d~~g~tpLh~A~~~g~-~~~l~~~~~~~-~-~~~-~~~~~---~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~g--ad   83 (154)
T PHA02736         13 PDIEGENILHYLCRNGG-VTDLLAFKNAI-S-DEN-RYLVL---EYNRHGKQCVHIVSNPDKADPQEKLKLLMEWG--AD   83 (154)
T ss_pred             cCCCCCCHHHHHHHhCC-HHHHHHHHHHh-c-chh-HHHHH---HhcCCCCEEEEeecccCchhHHHHHHHHHHcC--CC
Confidence            46678888888877643 11111111100 0 000 00000   12334445555555554444556777888877  67


Q ss_pred             ccccC-CCCchHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          186 MKYWN-DKDNTALHYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       186 v~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ++.++ ..|+||||+|+..|+.+++++|+.. |++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        84 in~~~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~  148 (154)
T PHA02736         84 INGKERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAK  148 (154)
T ss_pred             ccccCCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            88887 4899999999999999999999984 999999999999999999999999999999875

>PHA03095 ankyrin-like protein; Provisional

Probab=99.60  E-value=1.7e-14  Score=128.98  Aligned_cols=108  Identities=17%  Similarity=0.253  Sum_probs=85.8

Q ss_pred             hHHHHHHHhcCCCCccCcHHH---HHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC
Q 025512          139 PSMSHMMESLTNPTKKDQIEE---RMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN  215 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~  215 (251)
                      ..+..+++.+.+++..+..+.   +.++..... ...++..|+..+  .++|.+|..|+||||+|+..|+.++|++|+++
T Consensus       203 ~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~-~~~~v~~ll~~g--~din~~d~~g~TpLh~A~~~~~~~~v~~LL~~  279 (471)
T PHA03095        203 RIVRELIRAGCDPAATDMLGNTPLHSMATGSSC-KRSLVLPLLIAG--ISINARNRYGQTPLHYAAVFNNPRACRRLIAL  279 (471)
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCc-hHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            356677788888877655444   333332221 123455566665  67899999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          216 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       216 Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      |||++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       280 gad~n~~~~~g~tpl~~A~~~~~~~~v~~LL~~~  313 (471)
T PHA03095        280 GADINAVSSDGNTPLSLMVRNNNGRAVRAALAKN  313 (471)
T ss_pred             CCCCcccCCCCCCHHHHHHHhCCHHHHHHHHHhC
Confidence            9999999999999999999999999999998753

>PHA02917 ankyrin-like protein; Provisional

Probab=99.60  E-value=2.7e-14  Score=131.60  Aligned_cols=171  Identities=16%  Similarity=0.109  Sum_probs=118.7

Q ss_pred             hHHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchH-----HH-HHhh---------
Q 025512           69 SIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMT-----MA-ERLG---------  132 (251)
Q Consensus        69 ~~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~-----~a-~~~~---------  132 (251)
                      ..+..|...+.+...+.+..+|..|++        ++ .+..|.++++.+...+...+.     .. ...+         
T Consensus        34 t~Lh~a~~~~~~~~~~~v~~Ll~~ga~--------v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~~~~  105 (661)
T PHA02917         34 NALHAYLFNEHCNNVEVVKLLLDSGTN--------PLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNINDFNI  105 (661)
T ss_pred             cHHHHHHHhhhcCcHHHHHHHHHCCCC--------ccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCCcch
Confidence            345666566655666777777888887        44 455666666666554432110     00 0000         


Q ss_pred             -----hhccCChHHHHHHHhcCCCCccCcHHHHHHH--HhcCCCcHHHHHHHHhcCCCccccccCC---CC---------
Q 025512          133 -----NALMQDPSMSHMMESLTNPTKKDQIEERMAK--IKEDPSLKPILDEIESGGPSAMMKYWND---KD---------  193 (251)
Q Consensus       133 -----~~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~L~~~~~~~~v~~~d~---~G---------  193 (251)
                           ..-.+...+..+++.+++++.++..+.+...  +.......+++++|+..|  ++++..|.   .|         
T Consensus       106 ~~~~a~~~~~~e~vk~Ll~~Gadin~~d~~g~T~L~~~~a~~~~~~eivklLi~~G--a~vn~~d~~~~~g~~~~~~~~~  183 (661)
T PHA02917        106 FSYMKSKNVDVDLIKVLVEHGFDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENG--CSVLYEDEDDEYGYAYDDYQPR  183 (661)
T ss_pred             HHHHHhhcCCHHHHHHHHHcCCCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcC--CCcccccccccccccccccccc
Confidence                 0011225677789999999987766655443  334456788888888887  56665443   34         


Q ss_pred             --chHHHHHHH-----------cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH--HHHHHHHhCC
Q 025512          194 --NTALHYAAG-----------YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH--DVLKLLEKDA  249 (251)
Q Consensus       194 --~TpLh~Aa~-----------~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~--~iv~~Ll~~~  249 (251)
                        +||||+|+.           .++.++|++|+++|||++.+|..|+||||+|+..|+.  +||++|++++
T Consensus       184 ~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~g~  254 (661)
T PHA02917        184 NCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMKGI  254 (661)
T ss_pred             ccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHhCC
Confidence              599999986           4689999999999999999999999999999999985  7999998754

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.59  E-value=3.7e-14  Score=113.42  Aligned_cols=108  Identities=13%  Similarity=0.143  Sum_probs=83.1

Q ss_pred             hHHHHHHHhcCCCCccC----cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHH--cCCHHHHHHH
Q 025512          139 PSMSHMMESLTNPTKKD----QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAG--YGRKECVALL  212 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~--~g~~~~v~~L  212 (251)
                      ..+..+++.+++++..+    ....+.++........+++.+|+..|  ++++.+|..|+||||+|+.  .++.+++++|
T Consensus        67 eiv~~Ll~~gadvn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~g--adin~~d~~G~TpLh~a~~~~~~~~~iv~~L  144 (209)
T PHA02859         67 EILKFLIENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSG--SSITEEDEDGKNLLHMYMCNFNVRINVIKLL  144 (209)
T ss_pred             HHHHHHHHCCCCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHhccCCHHHHHHH
Confidence            45666677777776543    33445444333334577888888876  6788899999999999875  4689999999


Q ss_pred             HHCCCCCCCCCCCCCcHHHH-HHHcCCHHHHHHHHhC
Q 025512          213 LENGAAVTLQNMDGKTPIDV-AKLNSQHDVLKLLEKD  248 (251)
Q Consensus       213 l~~Gad~~~~d~~G~TpL~~-A~~~g~~~iv~~Ll~~  248 (251)
                      +++|++++.+|..|.||||. |+..++.+++++|+++
T Consensus       145 i~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~  181 (209)
T PHA02859        145 IDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSL  181 (209)
T ss_pred             HHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHc
Confidence            99999999999999999995 5678899999999875

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.58  E-value=9.1e-15  Score=109.10  Aligned_cols=65  Identities=26%  Similarity=0.262  Sum_probs=39.8

Q ss_pred             ccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       184 ~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      .-||.+|.+|.||||.|+++||.+||+.|+..||+++.+...||||||-||...+.+|+.+|+.+
T Consensus        88 n~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN~~va~~LLqh  152 (228)
T KOG0512|consen   88 NHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNNFEVAGRLLQH  152 (228)
T ss_pred             ccccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccchhHHHHHHhc
Confidence            34555666666666666666666666666666666666666666666666666666666655554

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.58  E-value=4.1e-14  Score=124.55  Aligned_cols=109  Identities=16%  Similarity=0.111  Sum_probs=88.5

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      ..+..+++.+++++..+..+.+..+++...+..+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus       116 ~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g--~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~  193 (413)
T PHA02875        116 DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHK--ACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGAN  193 (413)
T ss_pred             HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC
Confidence            5677778888888776554443333333344466777788776  56888999999999999999999999999999999


Q ss_pred             CCCCCCCCC-cHHHHHHHcCCHHHHHHHHhCC
Q 025512          219 VTLQNMDGK-TPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       219 ~~~~d~~G~-TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ++..+..|. ||+|+|+..|+.+++++|+++.
T Consensus       194 ~n~~~~~~~~t~l~~A~~~~~~~iv~~Ll~~g  225 (413)
T PHA02875        194 IDYFGKNGCVAALCYAIENNKIDIVRLFIKRG  225 (413)
T ss_pred             CCcCCCCCCchHHHHHHHcCCHHHHHHHHHCC
Confidence            999998874 8999999999999999999864

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.57  E-value=3.9e-14  Score=126.99  Aligned_cols=108  Identities=23%  Similarity=0.260  Sum_probs=83.7

Q ss_pred             HHHHHHHhcCCCCccCcH-HHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          140 SMSHMMESLTNPTKKDQI-EERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       140 ~~~~ll~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      .+..+++.+++++..+.. +.+..+++...+..+++++|+..|  ++++..|..|+||||+|+..|+.+++++|+++|++
T Consensus       149 iv~~Ll~~gadin~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g--ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~  226 (477)
T PHA02878        149 ITKLLLSYGADINMKDRHKGNTALHYATENKDQRLTELLLSYG--ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS  226 (477)
T ss_pred             HHHHHHHcCCCCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC
Confidence            556667778887766444 333333333444567777777776  56788889999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHc-CCHHHHHHHHhCC
Q 025512          219 VTLQNMDGKTPIDVAKLN-SQHDVLKLLEKDA  249 (251)
Q Consensus       219 ~~~~d~~G~TpL~~A~~~-g~~~iv~~Ll~~~  249 (251)
                      ++.+|..|+||||+|+.. ++.+++++|+++.
T Consensus       227 in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~g  258 (477)
T PHA02878        227 TDARDKCGNTPLHISVGYCKDYDILKLLLEHG  258 (477)
T ss_pred             CCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcC
Confidence            999999999999999865 6889999888753

>PHA02741 hypothetical protein; Provisional

Probab=99.57  E-value=2.5e-14  Score=110.69  Aligned_cols=95  Identities=24%  Similarity=0.291  Sum_probs=78.9

Q ss_pred             CccCcHHHHHHHHhcCCCc-HHHHHHHHhcCCCccccccCC-CCchHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCc
Q 025512          152 TKKDQIEERMAKIKEDPSL-KPILDEIESGGPSAMMKYWND-KDNTALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKT  228 (251)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~-~~~l~~L~~~~~~~~v~~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~-~Gad~~~~d~~G~T  228 (251)
                      +..+....++++...+..+ .+++++|+..+  .+++.++. .|+||||+|+..++.+++++|+. .|++++.+|..|+|
T Consensus        57 d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~g--adin~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~t  134 (169)
T PHA02741         57 DDAGQMCIHIAAEKHEAQLAAEIIDHLIELG--ADINAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKS  134 (169)
T ss_pred             CCCCCcHHHHHHHcCChHHHHHHHHHHHHcC--CCCCCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCC
Confidence            3345556666665444322 57888888876  66888885 89999999999999999999998 59999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhC
Q 025512          229 PIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       229 pL~~A~~~g~~~iv~~Ll~~  248 (251)
                      |||+|...++.+++++|+++
T Consensus       135 pL~~A~~~~~~~iv~~L~~~  154 (169)
T PHA02741        135 PFELAIDNEDVAMMQILREI  154 (169)
T ss_pred             HHHHHHHCCCHHHHHHHHHH
Confidence            99999999999999999875

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.57  E-value=9.6e-15  Score=124.11  Aligned_cols=139  Identities=19%  Similarity=0.217  Sum_probs=102.8

Q ss_pred             hhchHHHHHHHHcCCcchHHHHHhhhhcc-------CChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhc
Q 025512          108 TTQYYSTMQQVMQNPQFMTMAERLGNALM-------QDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESG  180 (251)
Q Consensus       108 ~~g~~~l~~~l~~~~~~~~~a~~~~~~ll-------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~  180 (251)
                      -.|+.++++.|+..+++++..-+-...-+       +-..++.+++.++++...+..+.+-..+++..+..+|.++|++.
T Consensus        93 aAGHl~vVk~L~~~ga~VN~tT~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~  172 (615)
T KOG0508|consen   93 AAGHLEVVKLLLRRGASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQ  172 (615)
T ss_pred             ccCcHHHHHHHHHhcCccccccccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHh
Confidence            45666777777666655442221111100       01466777788888877766665544455555556677777777


Q ss_pred             CCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          181 GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       181 ~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      |  +++|.++..|+|+||.|+..|+++++++|+.+|+.++. |..|.|||..|+..|+.++|++|+...
T Consensus       173 g--ADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i~~-d~~GmtPL~~Aa~tG~~~iVe~L~~~~  238 (615)
T KOG0508|consen  173 G--ADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKIDV-DGHGMTPLLLAAVTGHTDIVERLLQCE  238 (615)
T ss_pred             C--CCcchhcccCchHHHhhhhcccHHHHHHHHhCCceeee-cCCCCchHHHHhhhcchHHHHHHhcCC
Confidence            6  78999999999999999999999999999999998865 667999999999999999999998643

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.57  E-value=4.5e-14  Score=126.55  Aligned_cols=109  Identities=19%  Similarity=0.225  Sum_probs=90.9

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhc--CCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcC--CHHHHHHHHH
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKE--DPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYG--RKECVALLLE  214 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~  214 (251)
                      ..+..+++.+++++..+..+.+...++.  ..+..+++++|+..|  .+++..+..|+||||+|+..|  +.+++++|++
T Consensus        87 ~iv~~Ll~~ga~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~  164 (480)
T PHA03100         87 EIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG--ANVNIKNSDGENLLHLYLESNKIDLKILKLLID  164 (480)
T ss_pred             HHHHHHHHCCCCCCCCCCCCCchhhHHHhcccChHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHH
Confidence            4566677778777665544444444444  666778888888887  668888999999999999999  9999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          215 NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       215 ~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +|++++.++..|+||||+|+..|+.+++++|+++.
T Consensus       165 ~g~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~g  199 (480)
T PHA03100        165 KGVDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNG  199 (480)
T ss_pred             CCCCcccccCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999864

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.57  E-value=1.5e-14  Score=133.36  Aligned_cols=65  Identities=15%  Similarity=0.141  Sum_probs=57.6

Q ss_pred             cccccCCCCchHHHHHHHcCCHH-----HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH-----HHHHHHHhCC
Q 025512          185 MMKYWNDKDNTALHYAAGYGRKE-----CVALLLENGAAVTLQNMDGKTPIDVAKLNSQH-----DVLKLLEKDA  249 (251)
Q Consensus       185 ~v~~~d~~G~TpLh~Aa~~g~~~-----~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~-----~iv~~Ll~~~  249 (251)
                      ++|..|..|+||||+|+..|+.+     ++++|++.|+|++.+|..|+||||+|++.|+.     +||++|++..
T Consensus       489 nvN~~D~~G~TPLh~Aa~~g~~~~v~~e~~k~LL~~GADIN~~d~~G~TPLh~A~~~g~~~~~~~eIvk~LL~~g  563 (764)
T PHA02716        489 NNAVCETSGMTPLHVSIISHTNANIVMDSFVYLLSIQYNINIPTKNGVTPLMLTMRNNRLSGHQWYIVKNILDKR  563 (764)
T ss_pred             cccccCCCCCCHHHHHHHcCCccchhHHHHHHHHhCCCCCcccCCCCCCHHHHHHHcCCccccHHHHHHHHHhcC
Confidence            34666889999999999999874     55999999999999999999999999999976     9999998753

>PHA02798 ankyrin-like protein; Provisional

Probab=99.57  E-value=6.5e-14  Score=125.89  Aligned_cols=108  Identities=15%  Similarity=0.116  Sum_probs=84.4

Q ss_pred             hHHHHHHHhcCCCCccCcHHHH-----HH--HHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHH
Q 025512          139 PSMSHMMESLTNPTKKDQIEER-----MA--KIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVAL  211 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~-----~~--~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~  211 (251)
                      ..+..+++.+++++..+.....     +.  ..........++++|..+   .++|.+|..|+||||+|+..|+.+++++
T Consensus       200 ~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~---~dvN~~d~~G~TPL~~A~~~~~~~~v~~  276 (489)
T PHA02798        200 DILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSY---IDINQVDELGFNPLYYSVSHNNRKIFEY  276 (489)
T ss_pred             HHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhc---CCCCCcCcCCccHHHHHHHcCcHHHHHH
Confidence            3566667778777654322211     11  112233445666767665   6789999999999999999999999999


Q ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          212 LLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       212 Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      |+++|||++.+|..|+||||+|+..++.++++.|+++.
T Consensus       277 LL~~GAdin~~d~~G~TpL~~A~~~~~~~iv~~lL~~~  314 (489)
T PHA02798        277 LLQLGGDINIITELGNTCLFTAFENESKFIFNSILNKK  314 (489)
T ss_pred             HHHcCCcccccCCCCCcHHHHHHHcCcHHHHHHHHccC
Confidence            99999999999999999999999999999999998763

>PHA02946 ankyin-like protein; Provisional

Probab=99.57  E-value=2.7e-14  Score=126.58  Aligned_cols=74  Identities=19%  Similarity=0.194  Sum_probs=44.4

Q ss_pred             HHHHHHHhcCCCccccccCCCCchHHHHHHHcC--CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHHHhC
Q 025512          172 PILDEIESGGPSAMMKYWNDKDNTALHYAAGYG--RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ-HDVLKLLEKD  248 (251)
Q Consensus       172 ~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g--~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~-~~iv~~Ll~~  248 (251)
                      .++++|+..|  ++++.+|.+|+||||+|+..|  +.+++++|+. |++++.+|..|+||||+|+..++ .+++++|+.+
T Consensus       189 ~~v~~Ll~~G--adin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh~A~~~~~~~~~~~~Ll~~  265 (446)
T PHA02946        189 STISWMMKLG--ISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLTLLIKTLSPAHLINKLLST  265 (446)
T ss_pred             HHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHHHHHHhCChHHHHHHHHhC
Confidence            3444455544  455666666666666666654  5566666663 66666666666666666666655 3566666554

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.55  E-value=1.3e-13  Score=122.23  Aligned_cols=77  Identities=30%  Similarity=0.439  Sum_probs=69.6

Q ss_pred             HHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          171 KPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       171 ~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .++++.|+..|  .+++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|.||||+|+..++.+++++|+++.
T Consensus       104 ~~~i~~ll~~g--~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g  180 (434)
T PHA02874        104 KDMIKTILDCG--IDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKG  180 (434)
T ss_pred             HHHHHHHHHCc--CCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCC
Confidence            35566666665  667888999999999999999999999999999999999999999999999999999999999864

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.55  E-value=5.2e-14  Score=116.18  Aligned_cols=62  Identities=32%  Similarity=0.453  Sum_probs=44.4

Q ss_pred             ccccccCCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 025512          184 AMMKYWNDKDNTALHYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL  245 (251)
Q Consensus       184 ~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~~L  245 (251)
                      ++||.+|.+|.|+|++||.+||.+||++||.. ++|+...|.+|.|+|.+|-..||.+|.-+|
T Consensus       364 AdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~ml  426 (452)
T KOG0514|consen  364 ADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVML  426 (452)
T ss_pred             CCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHH
Confidence            56677777777777777777777777777665 677777777777777777777777766555

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.55  E-value=1.5e-14  Score=96.85  Aligned_cols=80  Identities=25%  Similarity=0.405  Sum_probs=68.0

Q ss_pred             cCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 025512          166 EDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL  245 (251)
Q Consensus       166 ~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~L  245 (251)
                      .++.+.++-..+..+   .+||.. ..|+||||+|+-+|.+++++||+..||+++.+|+.|-|||.-|++.||.+||++|
T Consensus        11 kNG~~DeVk~~v~~g---~nVn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~~cVklL   86 (117)
T KOG4214|consen   11 KNGEIDEVKQSVNEG---LNVNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHRDCVKLL   86 (117)
T ss_pred             ccCcHHHHHHHHHcc---ccHHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhHHHHHHH
Confidence            355555666555555   455543 4799999999999999999999999999999999999999999999999999999


Q ss_pred             HhCC
Q 025512          246 EKDA  249 (251)
Q Consensus       246 l~~~  249 (251)
                      +++.
T Consensus        87 L~~G   90 (117)
T KOG4214|consen   87 LQNG   90 (117)
T ss_pred             HHcC
Confidence            9863

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.54  E-value=1.1e-13  Score=124.66  Aligned_cols=167  Identities=13%  Similarity=0.071  Sum_probs=109.6

Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCCCc----c-chhchHHHHHHHHcCCcchHHHHHhhhhccC-------------ChHH
Q 025512           80 DPAFNSMAEQLQKTLHGANAEESIPQ----F-DTTQYYSTMQQVMQNPQFMTMAERLGNALMQ-------------DPSM  141 (251)
Q Consensus        80 n~~f~~i~~~l~~~~~~~~~~~~~~~----~-~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~-------------~~~~  141 (251)
                      +...+.+..+++.|++......+...    . ...++.++++.|+++|+.++.... +...+.             ...+
T Consensus        13 ~~~~~~v~~LL~~GadvN~~~~g~t~l~~~~~~~~~~~~iv~~Ll~~GAdvn~~~~-~~tpL~~a~~~~~~~~~~~~~iv   91 (494)
T PHA02989         13 TVDKNALEFLLRTGFDVNEEYRGNSILLLYLKRKDVKIKIVKLLIDNGADVNYKGY-IETPLCAVLRNREITSNKIKKIV   91 (494)
T ss_pred             cCcHHHHHHHHHcCCCcccccCCCCHHHHHHhcCCCChHHHHHHHHcCCCccCCCC-CCCcHHHHHhccCcchhhHHHHH
Confidence            44455566666777763221111111    1 122357888888888887654321 111100             1245


Q ss_pred             HHHHHhcCCCCccCcH---HHHHHHHhcCCCcHHHHHHHHhcCCCccc-cccCCCCchHHHHHHHc--CCHHHHHHHHHC
Q 025512          142 SHMMESLTNPTKKDQI---EERMAKIKEDPSLKPILDEIESGGPSAMM-KYWNDKDNTALHYAAGY--GRKECVALLLEN  215 (251)
Q Consensus       142 ~~ll~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~L~~~~~~~~v-~~~d~~G~TpLh~Aa~~--g~~~~v~~Ll~~  215 (251)
                      ..+++.+++++..+..   +.+.+.........+++++|+..|  +++ +..|..|+||||+|+..  ++.++|++|+++
T Consensus        92 ~~Ll~~Gadin~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G--adin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~  169 (494)
T PHA02989         92 KLLLKFGADINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKG--INVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSF  169 (494)
T ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCC--CCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHc
Confidence            6667888888766543   344445555556678888888877  667 67788899999988654  578999999999


Q ss_pred             CCCCCC-CCCCCCcHHHHHHHcC----CHHHHHHHHhCC
Q 025512          216 GAAVTL-QNMDGKTPIDVAKLNS----QHDVLKLLEKDA  249 (251)
Q Consensus       216 Gad~~~-~d~~G~TpL~~A~~~g----~~~iv~~Ll~~~  249 (251)
                      |++++. .+..|.||||+|++.+    +.+++++|+++.
T Consensus       170 Gadi~~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~G  208 (494)
T PHA02989        170 GVNLFEKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKG  208 (494)
T ss_pred             CCCccccccccCCChHHHHHhcccccccHHHHHHHHhCC
Confidence            999888 6788999999887654    788999888753

>PHA02798 ankyrin-like protein; Provisional

Probab=99.54  E-value=7.8e-14  Score=125.38  Aligned_cols=76  Identities=28%  Similarity=0.343  Sum_probs=52.4

Q ss_pred             HHHHHHHHhcCCCccccccCCCCchHHHHHHHcC---CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC---HHHHHH
Q 025512          171 KPILDEIESGGPSAMMKYWNDKDNTALHYAAGYG---RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ---HDVLKL  244 (251)
Q Consensus       171 ~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g---~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~---~~iv~~  244 (251)
                      .+++++|+..|  +++|.+|..|+||||+|+..+   +.+++++|+++|+|++.+|..|+||||+|+..++   .+++++
T Consensus        89 ~~iv~~Ll~~G--adiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gadvn~~d~~g~tpL~~a~~~~~~~~~~vv~~  166 (489)
T PHA02798         89 LDIVKILIENG--ADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKL  166 (489)
T ss_pred             HHHHHHHHHCC--CCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCCccccCCCCCcHHHHHHHcCCcchHHHHHH
Confidence            55666666665  556667777777777777654   5677777777777777777777777777777666   677777


Q ss_pred             HHhC
Q 025512          245 LEKD  248 (251)
Q Consensus       245 Ll~~  248 (251)
                      |+++
T Consensus       167 Ll~~  170 (489)
T PHA02798        167 LLEK  170 (489)
T ss_pred             HHHh
Confidence            7654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.53  E-value=7.1e-14  Score=125.29  Aligned_cols=105  Identities=24%  Similarity=0.258  Sum_probs=51.3

Q ss_pred             HHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHc-CCHHHHHHHHHCCCC
Q 025512          140 SMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGY-GRKECVALLLENGAA  218 (251)
Q Consensus       140 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~-g~~~~v~~Ll~~Gad  218 (251)
                      .+..+++.+++++..+..+.+....+......+++++|+..|  ++++.+|..|+||||+|+.. ++.+++++|+++|++
T Consensus       183 iv~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g--a~in~~d~~g~TpLh~A~~~~~~~~iv~~Ll~~gad  260 (477)
T PHA02878        183 LTELLLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENG--ASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVD  260 (477)
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHhcCCHHHHHHHHHcCCC
Confidence            344445555554443322222222222222344444445444  44555555566666665543 455666666666666


Q ss_pred             CCCCCC-CCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          219 VTLQNM-DGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       219 ~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ++.++. .|+||||+|  .++.+++++|+++
T Consensus       261 vn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~  289 (477)
T PHA02878        261 VNAKSYILGLTALHSS--IKSERKLKLLLEY  289 (477)
T ss_pred             CCccCCCCCCCHHHHH--ccCHHHHHHHHHC
Confidence            655553 455666665  3445555555543

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.53  E-value=4.9e-14  Score=116.37  Aligned_cols=109  Identities=23%  Similarity=0.302  Sum_probs=83.4

Q ss_pred             hHHHHHHHhc-C---CCCccCcHHHHHHHHhc--CCCcHHHHHHHHhcCCCcccccc-CCCCchHHHHHHHcCCHHHHHH
Q 025512          139 PSMSHMMESL-T---NPTKKDQIEERMAKIKE--DPSLKPILDEIESGGPSAMMKYW-NDKDNTALHYAAGYGRKECVAL  211 (251)
Q Consensus       139 ~~~~~ll~~~-~---~~~~~~~~~~~~~~~~~--~~~~~~~l~~L~~~~~~~~v~~~-d~~G~TpLh~Aa~~g~~~~v~~  211 (251)
                      +.+..+|+.+ .   ..|..+.....+++++.  .+.-..+++.|...|   +||.+ ...|+|+|++|+.+|+.++|+.
T Consensus       282 ~VV~~LLDSgvC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg---nVNaKAsQ~gQTALMLAVSHGr~d~vk~  358 (452)
T KOG0514|consen  282 DVVSILLDSGVCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG---DVNAKASQHGQTALMLAVSHGRVDMVKA  358 (452)
T ss_pred             HHHHHHhccCcccccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc---CcchhhhhhcchhhhhhhhcCcHHHHHH
Confidence            5666666654 2   24445555556555554  334455666666654   45554 3569999999999999999999


Q ss_pred             HHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 025512          212 LLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  250 (251)
Q Consensus       212 Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~  250 (251)
                      ||..|||||+||.+|.|+|+.|++.||.+||++|+..+.
T Consensus       359 LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~  397 (452)
T KOG0514|consen  359 LLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPS  397 (452)
T ss_pred             HHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCc
Confidence            999999999999999999999999999999999998763

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.52  E-value=4.3e-14  Score=133.40  Aligned_cols=139  Identities=19%  Similarity=0.183  Sum_probs=102.2

Q ss_pred             hhchHHHHHHHHcCCcchHHHHHhhhhcc-------CChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhc
Q 025512          108 TTQYYSTMQQVMQNPQFMTMAERLGNALM-------QDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESG  180 (251)
Q Consensus       108 ~~g~~~l~~~l~~~~~~~~~a~~~~~~ll-------~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~  180 (251)
                      ..|+++..+.+.+..+...+....+-..+       .......+++.+.+.+.......+....+.+.+...++++|+++
T Consensus       483 q~Gh~~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~  562 (1143)
T KOG4177|consen  483 QEGHTEVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEH  562 (1143)
T ss_pred             ccCCchHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcCCceehhcccccchHHHHHhcCCchHHHHhhhC
Confidence            45666777777665543332222221111       11456666777777777766655556666666667777788887


Q ss_pred             CCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          181 GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       181 ~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      +  ++++.+++.|+||||.||..|+.+|+.+|+++||++|..|.+|.||||.|++.|+.+++++|+..
T Consensus       563 g--Adv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~  628 (1143)
T KOG4177|consen  563 G--ADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVV  628 (1143)
T ss_pred             C--ccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhc
Confidence            7  77888899999999999999999999999999999999999999999999999999999888764

>PHA02741 hypothetical protein; Provisional

Probab=99.52  E-value=1e-13  Score=107.27  Aligned_cols=97  Identities=21%  Similarity=0.204  Sum_probs=74.0

Q ss_pred             CccCcHHHHHHHHhcCCCcHHHHHHHHhc-CCCccccccCCCCchHHHHHHHcCC----HHHHHHHHHCCCCCCCCCC-C
Q 025512          152 TKKDQIEERMAKIKEDPSLKPILDEIESG-GPSAMMKYWNDKDNTALHYAAGYGR----KECVALLLENGAAVTLQNM-D  225 (251)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~-~~~~~v~~~d~~G~TpLh~Aa~~g~----~~~v~~Ll~~Gad~~~~d~-~  225 (251)
                      +..+....+.++..++..+++.+..+..+ ....+++.+|..|+||||+|+..|+    .+++++|+++|++++.++. .
T Consensus        18 ~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~~~~~   97 (169)
T PHA02741         18 NSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQEMLE   97 (169)
T ss_pred             ccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCCCcCC
Confidence            34455566666655554444433111211 1125678899999999999999999    5899999999999999995 9


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhC
Q 025512          226 GKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       226 G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      |+||||+|+..++.+++++|++.
T Consensus        98 g~TpLh~A~~~~~~~iv~~Ll~~  120 (169)
T PHA02741         98 GDTALHLAAHRRDHDLAEWLCCQ  120 (169)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhC
Confidence            99999999999999999999963

>PHA03095 ankyrin-like protein; Provisional

Probab=99.52  E-value=1.8e-13  Score=122.34  Aligned_cols=149  Identities=14%  Similarity=0.089  Sum_probs=91.5

Q ss_pred             hcCchHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCc
Q 025512           78 AKDPAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQ  156 (251)
Q Consensus        78 ~~n~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~  156 (251)
                      .++..++.+..++..|++        ++ .+..|.+.++.++....        .+..    ..+..+++.+++++..+.
T Consensus        22 ~~~~~~~~v~~Ll~~ga~--------vn~~~~~g~t~Lh~a~~~~~--------~~~~----~iv~~Ll~~Gadin~~~~   81 (471)
T PHA03095         22 ASNVTVEEVRRLLAAGAD--------VNFRGEYGKTPLHLYLHYSS--------EKVK----DIVRLLLEAGADVNAPER   81 (471)
T ss_pred             CCCCCHHHHHHHHHcCCC--------cccCCCCCCCHHHHHHHhcC--------CChH----HHHHHHHHCCCCCCCCCC
Confidence            346677888888888877        44 44556666666554420        0011    345555666666665544


Q ss_pred             HHHHHHHHhcCCC-cHHHHHHHHhcCCCccccccCCCCchHHHHHH--HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 025512          157 IEERMAKIKEDPS-LKPILDEIESGGPSAMMKYWNDKDNTALHYAA--GYGRKECVALLLENGAAVTLQNMDGKTPIDVA  233 (251)
Q Consensus       157 ~~~~~~~~~~~~~-~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa--~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  233 (251)
                      .+.+...++.... ..+++++|+..|  ++++..|..|+||||+|+  ..++.+++++|+++|++++.+|..|+||||+|
T Consensus        82 ~g~TpLh~A~~~~~~~~iv~lLl~~g--a~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a  159 (471)
T PHA03095         82 CGFTPLHLYLYNATTLDVIKLLIKAG--ADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVL  159 (471)
T ss_pred             CCCCHHHHHHHcCCcHHHHHHHHHcC--CCCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHH
Confidence            3333222222222 456666666665  556777777777777777  44567777777777777777777777777777


Q ss_pred             HHcC--CHHHHHHHHhC
Q 025512          234 KLNS--QHDVLKLLEKD  248 (251)
Q Consensus       234 ~~~g--~~~iv~~Ll~~  248 (251)
                      +..+  +.+++++|+++
T Consensus       160 ~~~~~~~~~iv~~Ll~~  176 (471)
T PHA03095        160 LKSRNANVELLRLLIDA  176 (471)
T ss_pred             HHcCCCCHHHHHHHHHc
Confidence            6654  46677777764

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.51  E-value=2.3e-13  Score=129.21  Aligned_cols=138  Identities=14%  Similarity=0.142  Sum_probs=87.4

Q ss_pred             hhchHHHHHHHHcCCcchHHHHHhhhhccC-------ChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhc
Q 025512          108 TTQYYSTMQQVMQNPQFMTMAERLGNALMQ-------DPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESG  180 (251)
Q Consensus       108 ~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~-------~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~  180 (251)
                      ..|+.++++.|++.+++.+..+..|...++       ...+..+++.+++++..+..+.+....+...+..+++++|...
T Consensus       534 ~~g~~~~l~~Ll~~G~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~  613 (823)
T PLN03192        534 STGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHF  613 (823)
T ss_pred             HcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhc
Confidence            345566666666655544443333322211       1344555666666655443333222222222334444444544


Q ss_pred             CCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          181 GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       181 ~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +..  .+  ...|.++||+|+..|+.+++++|+++|+|++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       614 ~~~--~~--~~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G  678 (823)
T PLN03192        614 ASI--SD--PHAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNG  678 (823)
T ss_pred             Ccc--cC--cccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence            321  11  234667777888888899999999999999999999999999999999999999999853

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.50  E-value=6.5e-14  Score=132.17  Aligned_cols=109  Identities=24%  Similarity=0.312  Sum_probs=88.2

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      +....+++.....+...........+..+.+.+.....+..+|  ++++.++.+|.||||+||..|+..+|++||++|||
T Consensus       488 ~~~~llle~~~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~g--a~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd  565 (1143)
T KOG4177|consen  488 EVVQLLLEGGANDNLDAKKGLTPLHLAADEDTVKVAKILLEHG--ANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD  565 (1143)
T ss_pred             hHHHHhhhcCCccCccchhccchhhhhhhhhhHHHHHHHhhcC--CceehhcccccchHHHHHhcCCchHHHHhhhCCcc
Confidence            3444444444344444455555556666666677777777776  67888999999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          219 VTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       219 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ++.+++.|+||||.|+..|+.+|+++|+++.
T Consensus       566 v~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~G  596 (1143)
T KOG4177|consen  566 VNAKDKLGYTPLHQAAQQGHNDIAELLLKHG  596 (1143)
T ss_pred             ccccCCCCCChhhHHHHcChHHHHHHHHHcC
Confidence            9999999999999999999999999999975

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.49  E-value=1.1e-13  Score=127.70  Aligned_cols=138  Identities=13%  Similarity=0.106  Sum_probs=100.3

Q ss_pred             hchHHHHHHHHcCC-cchHHH-HHhhhhccC---------ChHHHHHHHhcCCCCccCcHHH---HHHHHhcCCCcHHHH
Q 025512          109 TQYYSTMQQVMQNP-QFMTMA-ERLGNALMQ---------DPSMSHMMESLTNPTKKDQIEE---RMAKIKEDPSLKPIL  174 (251)
Q Consensus       109 ~g~~~l~~~l~~~~-~~~~~a-~~~~~~ll~---------~~~~~~ll~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l  174 (251)
                      .+..++++.|++.+ +.++.. +..|...++         ...+..+++.+++++..+..+.   +.++..+ ....+++
T Consensus       152 ~v~leiVk~LLe~G~ADIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~GADVN~kD~~G~TPLH~Aa~~g-~~~~eIV  230 (764)
T PHA02716        152 GIDLDLIKYMVDVGIVNLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNGVNVNLQNNHLITPLHTYLITG-NVCASVI  230 (764)
T ss_pred             CCCHHHHHHHHHCCCCCcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC-CCCHHHH
Confidence            35668888999888 666554 444433222         1366677888888887655444   3333332 1235778


Q ss_pred             HHHHhcCCCccccccCCCCchHHHHH-------------------------------------HHcCCHHHHHHHHHCCC
Q 025512          175 DEIESGGPSAMMKYWNDKDNTALHYA-------------------------------------AGYGRKECVALLLENGA  217 (251)
Q Consensus       175 ~~L~~~~~~~~v~~~d~~G~TpLh~A-------------------------------------a~~g~~~~v~~Ll~~Ga  217 (251)
                      ++|+..|  +++|.+|..|+||||+|                                     +..|+.+++++|+++|+
T Consensus       231 klLLe~G--ADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GA  308 (764)
T PHA02716        231 KKIIELG--GDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGV  308 (764)
T ss_pred             HHHHHcC--CCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCC
Confidence            8888877  77888999999999975                                     34578899999999999


Q ss_pred             CCCCCCCCCCcHHHHHHH--cCCHHHHHHHHhCC
Q 025512          218 AVTLQNMDGKTPIDVAKL--NSQHDVLKLLEKDA  249 (251)
Q Consensus       218 d~~~~d~~G~TpL~~A~~--~g~~~iv~~Ll~~~  249 (251)
                      +++.+|..|+||||+|+.  .++.+++++|+++.
T Consensus       309 dIN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~G  342 (764)
T PHA02716        309 KLHYKDSAGRTCLHQYILRHNISTDIIKLLHEYG  342 (764)
T ss_pred             ceeccCCCCCCHHHHHHHHhCCCchHHHHHHHcC
Confidence            999999999999998764  46789999998753

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.48  E-value=1.2e-12  Score=104.63  Aligned_cols=106  Identities=21%  Similarity=0.266  Sum_probs=79.8

Q ss_pred             HHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccC-CCCchHHHHHHHc---CCHHHHHHHHHCC
Q 025512          141 MSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWN-DKDNTALHYAAGY---GRKECVALLLENG  216 (251)
Q Consensus       141 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d-~~G~TpLh~Aa~~---g~~~~v~~Ll~~G  216 (251)
                      +..+++.....+..+..+.+.++.. .....+++++|++.|  ++++.++ ..|+||||+|+..   ++.+++++|+++|
T Consensus        37 vk~Li~~~n~~~~~g~TpLh~a~~~-~~~~~eiv~~Ll~~g--advn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~g  113 (209)
T PHA02859         37 VKKWIKFVNDCNDLYETPIFSCLEK-DKVNVEILKFLIENG--ADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSG  113 (209)
T ss_pred             HHHHHHhhhccCccCCCHHHHHHHc-CCCCHHHHHHHHHCC--CCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCC
Confidence            3333333333444555555554432 234578888888887  6788886 4899999998764   4799999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHH--cCCHHHHHHHHhCC
Q 025512          217 AAVTLQNMDGKTPIDVAKL--NSQHDVLKLLEKDA  249 (251)
Q Consensus       217 ad~~~~d~~G~TpL~~A~~--~g~~~iv~~Ll~~~  249 (251)
                      ++++.+|..|+||||+|+.  .++.+++++|+++.
T Consensus       114 adin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~g  148 (209)
T PHA02859        114 SSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSG  148 (209)
T ss_pred             CCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcC
Confidence            9999999999999999876  46899999999763

>PHA02946 ankyin-like protein; Provisional

Probab=99.47  E-value=5.4e-13  Score=118.32  Aligned_cols=104  Identities=19%  Similarity=0.246  Sum_probs=45.1

Q ss_pred             HHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCC--HHHHHHHHHCCCC
Q 025512          141 MSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGR--KECVALLLENGAA  218 (251)
Q Consensus       141 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~--~~~v~~Ll~~Gad  218 (251)
                      +..+++.+++++..+..+.+..+++...+..+++++|+..|  ++++.+|.+|+||||+|+..++  .+++++|+++|++
T Consensus        55 v~~Ll~~Gadvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G--Adin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gad  132 (446)
T PHA02946         55 VEELLHRGYSPNETDDDGNYPLHIASKINNNRIVAMLLTHG--ADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAK  132 (446)
T ss_pred             HHHHHHCcCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC
Confidence            34444444444443333332222222222334444444443  3444445555555555444332  4445555555555


Q ss_pred             CCC-CCCCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          219 VTL-QNMDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       219 ~~~-~d~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                      ++. .|..|.|||| |+..++.+++++|++
T Consensus       133 in~~~d~~g~tpL~-aa~~~~~~vv~~Ll~  161 (446)
T PHA02946        133 INNSVDEEGCGPLL-ACTDPSERVFKKIMS  161 (446)
T ss_pred             cccccCCCCCcHHH-HHHCCChHHHHHHHh
Confidence            543 3444555554 333344455554444

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.47  E-value=5e-13  Score=120.33  Aligned_cols=108  Identities=20%  Similarity=0.237  Sum_probs=84.6

Q ss_pred             hHHHHHHHhcCCCCccCcHH---HHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC
Q 025512          139 PSMSHMMESLTNPTKKDQIE---ERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN  215 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~  215 (251)
                      ..+..++..+++++.++...   .|+++..+..   ..++.|++-.+...+|..|-.|.||||+|+..||..|+++||++
T Consensus       287 ~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~---ntv~rLL~~~~~rllne~D~~g~tpLHlaa~~gH~~v~qlLl~~  363 (929)
T KOG0510|consen  287 ESVDNLLGFGASINSKNKDEESPLHFAAIYGRI---NTVERLLQESDTRLLNESDLHGMTPLHLAAKSGHDRVVQLLLNK  363 (929)
T ss_pred             hHHHHHHHcCCcccccCCCCCCchHHHHHcccH---HHHHHHHhCcCccccccccccCCCchhhhhhcCHHHHHHHHHhc
Confidence            56777777777776655444   4555544433   33344444333567888899999999999999999999999999


Q ss_pred             CCCCC---CCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          216 GAAVT---LQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       216 Gad~~---~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ||+..   ..|.+|.||||+|+..|+..+|++|+.+.
T Consensus       364 GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~G  400 (929)
T KOG0510|consen  364 GALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHG  400 (929)
T ss_pred             ChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcC
Confidence            99987   56999999999999999999999999864

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.46  E-value=4.8e-13  Score=111.66  Aligned_cols=102  Identities=19%  Similarity=0.208  Sum_probs=78.2

Q ss_pred             hHHHHHHHhcCCCCcc-------CcHHHHHHHHhcCCCcHHHHHHHHhcCCCcccccc-CCCCchHHHHHHHcCCHHHHH
Q 025512          139 PSMSHMMESLTNPTKK-------DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYW-NDKDNTALHYAAGYGRKECVA  210 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~-d~~G~TpLh~Aa~~g~~~~v~  210 (251)
                      ..+..+++.+++++..       +..+.+.++   .....+++++|+..|  ++++.. +..|+||||+|+..|+.++++
T Consensus        47 eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa---~~~~~eivklLL~~G--ADVN~~~~~~g~TpLh~Aa~~~~~eivk  121 (300)
T PHA02884         47 DIIDAILKLGADPEAPFPLSENSKTNPLIYAI---DCDNDDAAKLLIRYG--ADVNRYAEEAKITPLYISVLHGCLKCLE  121 (300)
T ss_pred             HHHHHHHHCCCCccccCcccCCCCCCHHHHHH---HcCCHHHHHHHHHcC--CCcCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            4555666677776653       334444444   344567777788887  678875 457999999999999999999


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 025512          211 LLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL  245 (251)
Q Consensus       211 ~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~L  245 (251)
                      +|+.+|++++.+|..|+||||+|+..++.+++.++
T Consensus       122 lLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~  156 (300)
T PHA02884        122 ILLSYGADINIQTNDMVTPIELALMICNNFLAFMI  156 (300)
T ss_pred             HHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHh
Confidence            99999999999999999999999987766555443

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.46  E-value=2e-13  Score=105.24  Aligned_cols=75  Identities=19%  Similarity=0.344  Sum_probs=64.9

Q ss_pred             HHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHH---HHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHH
Q 025512          171 KPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKEC---VALLLENGAAVTLQN-MDGKTPIDVAKLNSQHDVLKLLE  246 (251)
Q Consensus       171 ~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~---v~~Ll~~Gad~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll  246 (251)
                      .+++++|...+  ..++..|..|+||||+|+..|+.++   +++|+++|++++.++ ..|+||||+|+..++.+++++|+
T Consensus        37 ~~~~~~l~~~g--~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~~d~~~g~TpLh~A~~~g~~~iv~~Ll  114 (166)
T PHA02743         37 MEVAPFISGDG--HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINARELGTGNTLLHIAASTKNYELAEWLC  114 (166)
T ss_pred             HHHHHHHhhcc--hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCCCCCCCCCcHHHHHHHhCCHHHHHHHH
Confidence            35555666665  5678889999999999999998654   899999999999998 58999999999999999999998


Q ss_pred             h
Q 025512          247 K  247 (251)
Q Consensus       247 ~  247 (251)
                      .
T Consensus       115 ~  115 (166)
T PHA02743        115 R  115 (166)
T ss_pred             h
Confidence            4

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.46  E-value=3.4e-13  Score=121.40  Aligned_cols=62  Identities=29%  Similarity=0.409  Sum_probs=56.8

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          186 MKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       186 v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                      |+..|++|.||||+||+.|+.++++.|+..|++++.++.++.||||.|++.|++++|+-|++
T Consensus       266 v~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I~~kn~d~~spLH~AA~yg~~ntv~rLL~  327 (929)
T KOG0510|consen  266 VNDEDNDGCTPLHYAARQGGPESVDNLLGFGASINSKNKDEESPLHFAAIYGRINTVERLLQ  327 (929)
T ss_pred             hhcccccCCchHHHHHHcCChhHHHHHHHcCCcccccCCCCCCchHHHHHcccHHHHHHHHh
Confidence            45568899999999999999999999999999999999999999999999999999988887

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.45  E-value=6.1e-13  Score=111.04  Aligned_cols=79  Identities=23%  Similarity=0.250  Sum_probs=69.3

Q ss_pred             CcHHHHHHHHhcCCCcccccc----CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHH
Q 025512          169 SLKPILDEIESGGPSAMMKYW----NDKDNTALHYAAGYGRKECVALLLENGAAVTLQN-MDGKTPIDVAKLNSQHDVLK  243 (251)
Q Consensus       169 ~~~~~l~~L~~~~~~~~v~~~----d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d-~~G~TpL~~A~~~g~~~iv~  243 (251)
                      +..+++++|+..|  ++++.+    +..|.||||+|+..++.+++++|+++|||++.++ ..|.||||+|+..++.++++
T Consensus        44 ~~~eivk~LL~~G--AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa~~~~~eivk  121 (300)
T PHA02884         44 HYTDIIDAILKLG--ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAEEAKITPLYISVLHGCLKCLE  121 (300)
T ss_pred             CCHHHHHHHHHCC--CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccCCCCCCHHHHHHHcCCHHHHH
Confidence            3467777888887  567766    4589999999999999999999999999999974 68999999999999999999


Q ss_pred             HHHhCC
Q 025512          244 LLEKDA  249 (251)
Q Consensus       244 ~Ll~~~  249 (251)
                      +|+++.
T Consensus       122 lLL~~G  127 (300)
T PHA02884        122 ILLSYG  127 (300)
T ss_pred             HHHHCC
Confidence            999864

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.44  E-value=3.3e-13  Score=100.82  Aligned_cols=90  Identities=28%  Similarity=0.281  Sum_probs=71.7

Q ss_pred             CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 025512          155 DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK  234 (251)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  234 (251)
                      +....|.+++.++.   .|++.|+..|  ++.+.+...||||||-||...+.+|+.+||++|+|||++....+||||+|+
T Consensus        97 ~YTpLHRAaYn~h~---div~~ll~~g--An~~a~T~~GWTPLhSAckWnN~~va~~LLqhgaDVnA~t~g~ltpLhlaa  171 (228)
T KOG0512|consen   97 EYTPLHRAAYNGHL---DIVHELLLSG--ANKEAKTNEGWTPLHSACKWNNFEVAGRLLQHGADVNAQTKGLLTPLHLAA  171 (228)
T ss_pred             cccHHHHHHhcCch---HHHHHHHHcc--CCcccccccCccchhhhhcccchhHHHHHHhccCcccccccccchhhHHhh
Confidence            34555666666554   4444444444  677889999999999999999999999999999999999999999999999


Q ss_pred             HcCC-HHHHHHHHhCC
Q 025512          235 LNSQ-HDVLKLLEKDA  249 (251)
Q Consensus       235 ~~g~-~~iv~~Ll~~~  249 (251)
                      ...+ ...+++|+...
T Consensus       172 ~~rn~r~t~~~Ll~dr  187 (228)
T KOG0512|consen  172 GNRNSRDTLELLLHDR  187 (228)
T ss_pred             cccchHHHHHHHhhcc
Confidence            7665 55677877654

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.43  E-value=8.3e-13  Score=114.01  Aligned_cols=65  Identities=35%  Similarity=0.476  Sum_probs=59.4

Q ss_pred             cccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          185 MMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       185 ~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ..+..+..|.|+||.|+..|..++.++|+++|.+++++|.+||||||.|+..|+.+++++|+.|.
T Consensus       190 ~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~g  254 (527)
T KOG0505|consen  190 ELDARHARGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLHAAAHWGQEDACELLVEHG  254 (527)
T ss_pred             cccccccccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCcccHHHHhhhHhHHHHHHHhh
Confidence            34445556999999999999999999999999999999999999999999999999999998763

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.43  E-value=1.6e-12  Score=121.52  Aligned_cols=107  Identities=23%  Similarity=0.247  Sum_probs=63.0

Q ss_pred             HHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCC-HHHHHHHHHCCCC
Q 025512          140 SMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGR-KECVALLLENGAA  218 (251)
Q Consensus       140 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~-~~~v~~Ll~~Gad  218 (251)
                      .+..+++.+++++..+..+.+...++...+..+++++|+..|  ++++..+..|+||||+|+..++ ..++++|+++|++
T Consensus       357 iv~lLl~~gadin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~g--ad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gad  434 (682)
T PHA02876        357 IVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYG--ADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGAN  434 (682)
T ss_pred             HHHHHHHcCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCC
Confidence            344455666666655444433333333334455555566555  4556666666677777665444 3556667777777


Q ss_pred             CCCCCCCCCcHHHHHHHcC-CHHHHHHHHhC
Q 025512          219 VTLQNMDGKTPIDVAKLNS-QHDVLKLLEKD  248 (251)
Q Consensus       219 ~~~~d~~G~TpL~~A~~~g-~~~iv~~Ll~~  248 (251)
                      ++.+|..|+||||+|+..+ +.+++++|+++
T Consensus       435 in~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~  465 (682)
T PHA02876        435 VNSKNKDLSTPLHYACKKNCKLDVIEMLLDN  465 (682)
T ss_pred             CCcCCCCCChHHHHHHHhCCcHHHHHHHHHC
Confidence            7777777777777776654 46677766654

>PHA02730 ankyrin-like protein; Provisional

Probab=99.42  E-value=8.3e-12  Score=113.57  Aligned_cols=77  Identities=19%  Similarity=0.201  Sum_probs=70.2

Q ss_pred             HHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHc--CCHHHHHHHHh
Q 025512          171 KPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNM-DGKTPIDVAKLN--SQHDVLKLLEK  247 (251)
Q Consensus       171 ~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~-~G~TpL~~A~~~--g~~~iv~~Ll~  247 (251)
                      .+++++|+..|  +++|.+|..|+||||+|+..++.+++++|+++||+++.+|. .|.||||+|+..  ++.+++++|++
T Consensus       442 ~~ivk~LIs~G--ADINakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs  519 (672)
T PHA02730        442 IDVFDILSKYM--DDIDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLS  519 (672)
T ss_pred             HHHHHHHHhcc--cchhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHH
Confidence            35688899887  77899999999999999999999999999999999999997 599999999874  78999999998


Q ss_pred             CC
Q 025512          248 DA  249 (251)
Q Consensus       248 ~~  249 (251)
                      +.
T Consensus       520 ~g  521 (672)
T PHA02730        520 YH  521 (672)
T ss_pred             cC
Confidence            74

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.41  E-value=2.2e-12  Score=122.59  Aligned_cols=78  Identities=26%  Similarity=0.379  Sum_probs=69.5

Q ss_pred             cHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          170 LKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       170 ~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ...+++.|+..|  .++|..|..|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.+++++|+++.
T Consensus       537 ~~~~l~~Ll~~G--~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gadin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~  614 (823)
T PLN03192        537 NAALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFA  614 (823)
T ss_pred             CHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcC
Confidence            356666677776  668889999999999999999999999999999999999999999999999999999999987653

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.41  E-value=8.2e-13  Score=113.73  Aligned_cols=66  Identities=33%  Similarity=0.317  Sum_probs=61.5

Q ss_pred             ccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       184 ~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .+....+..|-||||-|++.||.+||+|||+.|++||..|.+||||||.|+..++..|++.|+++.
T Consensus       574 ~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~~ckqLVe~G  639 (752)
T KOG0515|consen  574 TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVPMCKQLVESG  639 (752)
T ss_pred             cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchHHHHHHHhcc
Confidence            455667889999999999999999999999999999999999999999999999999999998864

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.40  E-value=1.4e-12  Score=120.85  Aligned_cols=76  Identities=34%  Similarity=0.450  Sum_probs=70.0

Q ss_pred             HHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          171 KPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       171 ~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ...+++|+..+  .++|.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        95 ~~~vk~LL~~G--adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~  170 (664)
T PTZ00322         95 AVGARILLTGG--ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH  170 (664)
T ss_pred             HHHHHHHHHCC--CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhC
Confidence            45566677766  67888999999999999999999999999999999999999999999999999999999999987

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.39  E-value=6.8e-12  Score=117.25  Aligned_cols=107  Identities=18%  Similarity=0.110  Sum_probs=69.7

Q ss_pred             HHHHHHHhcCCCCccCcHHHHHHHHhc-CCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          140 SMSHMMESLTNPTKKDQIEERMAKIKE-DPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       140 ~~~~ll~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      .+..++..+++++..+..+.+...++. ......++.+|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus       323 ~v~~Ll~~gadin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~g--adin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad  400 (682)
T PHA02876        323 NIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELG--ANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD  400 (682)
T ss_pred             HHHHHHHcCCCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcC--CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            444555666666655443333222221 233445555566655  56777778888888888888888888888888888


Q ss_pred             CCCCCCCCCcHHHHHHHcCC-HHHHHHHHhC
Q 025512          219 VTLQNMDGKTPIDVAKLNSQ-HDVLKLLEKD  248 (251)
Q Consensus       219 ~~~~d~~G~TpL~~A~~~g~-~~iv~~Ll~~  248 (251)
                      ++..+..|.||||+|+..++ ..++++|+++
T Consensus       401 ~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~  431 (682)
T PHA02876        401 IEALSQKIGTALHFALCGTNPYMSVKTLIDR  431 (682)
T ss_pred             ccccCCCCCchHHHHHHcCCHHHHHHHHHhC
Confidence            88888888888888876555 4567777764

>PHA02917 ankyrin-like protein; Provisional

Probab=99.38  E-value=5.5e-12  Score=116.44  Aligned_cols=136  Identities=17%  Similarity=0.180  Sum_probs=98.7

Q ss_pred             HHHHHHHHcCCcchHHHHHhhhhc--cCC-hHHHHHHH-hcCCCCcc---CcHHHHHHHHhc------------------
Q 025512          112 YSTMQQVMQNPQFMTMAERLGNAL--MQD-PSMSHMME-SLTNPTKK---DQIEERMAKIKE------------------  166 (251)
Q Consensus       112 ~~l~~~l~~~~~~~~~a~~~~~~l--l~~-~~~~~ll~-~~~~~~~~---~~~~~~~~~~~~------------------  166 (251)
                      .++++.|+..|+.++.....|...  ..+ ..+..++. .+++.+..   +..+.+.++...                  
T Consensus       346 ~~~v~~Ll~~GAdvn~~~~~g~~~~~~~~~~~i~~LL~~~ga~~~~~~~~G~TpL~~a~~~~~~~~~~~~~~~~~~~~~~  425 (661)
T PHA02917        346 IPLVECMLEYGAVVNKEAIHGYFRNINIDSYTMKYLLKKEGGDAVNHLDDGEIPIGHLCKSNYGCYNFYTYTYKKGLCDM  425 (661)
T ss_pred             HHHHHHHHHcCCCCCCCCccccchhhcCCHHHHHHHHHhcCCCccccCCCCCChhHHHHHhcccchhhhhhhhhhccchh
Confidence            467888888888766544444331  111 25555565 35443332   334444332110                  


Q ss_pred             --CCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH-cCCHHHHH
Q 025512          167 --DPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL-NSQHDVLK  243 (251)
Q Consensus       167 --~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~-~g~~~iv~  243 (251)
                        .....+++++|+..|  +++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|+. .++.++++
T Consensus       426 ~~~~~~~~~v~~Ll~~G--AdIN~kd~~G~TpLh~Aa~~~~~~~v~~Ll~~GAdin~~d~~G~T~L~~A~~~~~~~~iv~  503 (661)
T PHA02917        426 SYACPILSTINICLPYL--KDINMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINESRNIELLK  503 (661)
T ss_pred             hhhhhhHHHHHHHHHCC--CCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHhCCCHHHHH
Confidence              111466788899987  7789999999999999999999999999999999999999999999999996 78999999


Q ss_pred             HHHhCC
Q 025512          244 LLEKDA  249 (251)
Q Consensus       244 ~Ll~~~  249 (251)
                      +|+.+.
T Consensus       504 ~LL~~g  509 (661)
T PHA02917        504 MLLCHK  509 (661)
T ss_pred             HHHHcC
Confidence            999764

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=99.38  E-value=2.7e-12  Score=111.52  Aligned_cols=161  Identities=17%  Similarity=0.237  Sum_probs=105.0

Q ss_pred             ccccccccCCC---hhHHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCc---cchhchHHHHHHHHcCCcchHHHHH
Q 025512           57 DFSAMSGLLND---PSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQ---FDTTQYYSTMQQVMQNPQFMTMAER  130 (251)
Q Consensus        57 ~~s~~~sl~~d---p~~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~---~~~~g~~~l~~~l~~~~~~~~~a~~  130 (251)
                      |.|++++|-.|   .++..++..|| |..-|.|-|-.-.|-..+..++....   |++.+|....+.             
T Consensus       549 ~lSrvr~LeLDdWPvEl~~Vm~aiG-N~~AN~vWE~~~~G~~KPs~~s~REEkErwIr~KYeqklFL-------------  614 (749)
T KOG0705|consen  549 HLSRVRSLELDDWPVELLKVMSAIG-NDLANSVWEGSSQGQTKPSPDSSREEKERWIRAKYEQKLFL-------------  614 (749)
T ss_pred             hhhhhhccccccCcHHHHHHHHHhh-hhHHHHHhhhhccCCcCCCccccHHHHHHHHHHHHHHHhhc-------------
Confidence            78999999554   78888999999 88778887764444442111111111   222222221110             


Q ss_pred             hhhhccCChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCcccc--ccCCCCchHHHHHHHcCCHHH
Q 025512          131 LGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMK--YWNDKDNTALHYAAGYGRKEC  208 (251)
Q Consensus       131 ~~~~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~--~~d~~G~TpLh~Aa~~g~~~~  208 (251)
                             .|.          +-..-..+..+.....+.++..++- |+.+|....+|  +-+.+|+|+||+||..|++.+
T Consensus       615 -------aPl----------~~te~~lgqqLl~A~~~~Dl~t~~l-LLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl  676 (749)
T KOG0705|consen  615 -------APL----------PCTEEPLGQQLLRAVAAEDLQTAIL-LLAHGSREEVNETCGEGDGRTALHLAARKGNVVL  676 (749)
T ss_pred             -------CCC----------CCCCCchHHHHHHHHHHHHHHHHHH-HHhccCchhhhccccCCCCcchhhhhhhhcchhH
Confidence                   010          1111122333333333444444443 44444344443  346678999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          209 VALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       209 v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .++|+-+|+|+.++|.+|+|+|.||.+.|..+|+.+|+.+.
T Consensus       677 ~QLLiWyg~dv~~rda~g~t~l~yar~a~sqec~d~llq~g  717 (749)
T KOG0705|consen  677 AQLLIWYGVDVMARDAHGRTALFYARQAGSQECIDVLLQYG  717 (749)
T ss_pred             HHHHHHhCccceecccCCchhhhhHhhcccHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999874

>PHA02792 ankyrin-like protein; Provisional

Probab=99.37  E-value=3.1e-12  Score=115.27  Aligned_cols=137  Identities=12%  Similarity=0.138  Sum_probs=98.0

Q ss_pred             hHHHHHHHHcCCcchHH---HHHhhhhc-cCC-hHHHHHHHhcCCCCccCcH-----HHHHHHHhcCCCcHHHHHHHHhc
Q 025512          111 YYSTMQQVMQNPQFMTM---AERLGNAL-MQD-PSMSHMMESLTNPTKKDQI-----EERMAKIKEDPSLKPILDEIESG  180 (251)
Q Consensus       111 ~~~l~~~l~~~~~~~~~---a~~~~~~l-l~~-~~~~~ll~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~L~~~  180 (251)
                      +.++++.++.+++....   .+...... ..+ ..+..+++.+++++..+..     +.+.+..........++++|+..
T Consensus       320 ~ieiIK~LId~Ga~~~r~~~~n~~~~Aa~~gn~eIVelLIs~GADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~  399 (631)
T PHA02792        320 YINVIKCMIDEGATLYRFKHINKYFQKFDNRDPKVVEYILKNGNVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPY  399 (631)
T ss_pred             cHHHHHHHHHCCCccccCCcchHHHHHHHcCCHHHHHHHHHcCCchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhc
Confidence            55778888887775421   11111111 112 4666677888888765533     33444444445566778888887


Q ss_pred             CCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH---cC-------CHHHHHHHHhCC
Q 025512          181 GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL---NS-------QHDVLKLLEKDA  249 (251)
Q Consensus       181 ~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~---~g-------~~~iv~~Ll~~~  249 (251)
                      |  +++|.+|..|+||||+|+..++.+++++|+++|++++.+|..|+||||+|..   .+       ..+++++|+++.
T Consensus       400 G--ADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~  476 (631)
T PHA02792        400 I--DDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKL  476 (631)
T ss_pred             C--CccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcC
Confidence            7  6789999999999999999999999999999999999999999999999975   22       245677777653

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.36  E-value=1.3e-12  Score=105.10  Aligned_cols=89  Identities=26%  Similarity=0.239  Sum_probs=75.2

Q ss_pred             HHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 025512          159 ERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ  238 (251)
Q Consensus       159 ~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~  238 (251)
                      ....+.....+...+++.|+..|  +-||..+....||||+|+.+||.++|+.|+++.+|+|+.+..|.|||||||..|+
T Consensus        35 fsplhwaakegh~aivemll~rg--arvn~tnmgddtplhlaaahghrdivqkll~~kadvnavnehgntplhyacfwgy  112 (448)
T KOG0195|consen   35 FSPLHWAAKEGHVAIVEMLLSRG--ARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKADVNAVNEHGNTPLHYACFWGY  112 (448)
T ss_pred             cchhhhhhhcccHHHHHHHHhcc--cccccccCCCCcchhhhhhcccHHHHHHHHHHhcccchhhccCCCchhhhhhhcH
Confidence            33455555666677778788877  5577777777899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 025512          239 HDVLKLLEKDA  249 (251)
Q Consensus       239 ~~iv~~Ll~~~  249 (251)
                      ..|++-|+.+.
T Consensus       113 dqiaedli~~g  123 (448)
T KOG0195|consen  113 DQIAEDLISCG  123 (448)
T ss_pred             HHHHHHHHhcc
Confidence            99999888753

>PHA02795 ankyrin-like protein; Provisional

Probab=99.35  E-value=9.7e-12  Score=108.13  Aligned_cols=108  Identities=11%  Similarity=-0.067  Sum_probs=85.1

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCcccccc-----CCCCchHHHHHHHcCCHHHHHHHH
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYW-----NDKDNTALHYAAGYGRKECVALLL  213 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~-----d~~G~TpLh~Aa~~g~~~~v~~Ll  213 (251)
                      +.+..|++.|++++....  .+....+......+++++|+..|.. +.+..     +..+.|++|.|+..++.+++++|+
T Consensus       132 eiV~~LI~~GADIn~~~~--~t~lh~A~~~~~~eIVk~Lls~Ga~-~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LI  208 (437)
T PHA02795        132 DIVDFMVDHGAVIYKIEC--LNAYFRGICKKESSVVEFILNCGIP-DENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCI  208 (437)
T ss_pred             HHHHHHHHCCCCCCCCCC--CCHHHHHHHcCcHHHHHHHHhcCCc-ccccccchhhhhhccchhHHHHhcCHHHHHHHHH
Confidence            688888999999877443  2222333344456777778887742 22222     234789999999999999999999


Q ss_pred             HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          214 ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       214 ~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ++||+++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       209 s~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~G  244 (437)
T PHA02795        209 PYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENG  244 (437)
T ss_pred             hCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            999999999999999999999999999999999864

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.34  E-value=1.4e-12  Score=99.30  Aligned_cols=96  Identities=16%  Similarity=0.213  Sum_probs=70.2

Q ss_pred             CCccCcHHHHHHHHhcCCCcHHHHHHHHh--cCCCccccccCCCCchHHHHHHHcCCH---HHHHHHHHCCCCCCCCC-C
Q 025512          151 PTKKDQIEERMAKIKEDPSLKPILDEIES--GGPSAMMKYWNDKDNTALHYAAGYGRK---ECVALLLENGAAVTLQN-M  224 (251)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~--~~~~~~v~~~d~~G~TpLh~Aa~~g~~---~~v~~Ll~~Gad~~~~d-~  224 (251)
                      .+..+....+.++..++  ...++.+...  ......++..|.+|+||||+|+..|+.   +++++|+++|++++.++ .
T Consensus        13 ~d~~g~tpLh~A~~~g~--~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~~   90 (154)
T PHA02736         13 PDIEGENILHYLCRNGG--VTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKERV   90 (154)
T ss_pred             cCCCCCCHHHHHHHhCC--HHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCCC
Confidence            34456666676665543  3333321111  111112345688999999999999987   46899999999999998 5


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          225 DGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       225 ~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      .|+||||+|+..++.+++++|+++
T Consensus        91 ~g~T~Lh~A~~~~~~~i~~~Ll~~  114 (154)
T PHA02736         91 FGNTPLHIAVYTQNYELATWLCNQ  114 (154)
T ss_pred             CCCcHHHHHHHhCCHHHHHHHHhC
Confidence            999999999999999999999863

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.30  E-value=2.4e-12  Score=99.82  Aligned_cols=65  Identities=22%  Similarity=0.258  Sum_probs=45.3

Q ss_pred             ccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       184 ~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      +.||..|+.|.|||+||+.+||+++|++||+.|||+++..+...|+|.+|++.|+.+||++|+.+
T Consensus       151 n~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~lgk~resALsLAt~ggytdiV~lLL~r  215 (296)
T KOG0502|consen  151 NKVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDALGKYRESALSLATRGGYTDIVELLLTR  215 (296)
T ss_pred             ccccCccccCchHhHHHHhcCchHHHHHHHHcCCChhhhhhhhhhhHhHHhcCChHHHHHHHHhc
Confidence            45666777777777777777777777777777777776666666666666666666666666653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.28  E-value=1.2e-10  Score=109.90  Aligned_cols=156  Identities=19%  Similarity=0.175  Sum_probs=96.8

Q ss_pred             HHHHHHHHhcCchHHHHHHHHHh--hhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHH
Q 025512           70 IKELAEQIAKDPAFNSMAEQLQK--TLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMME  146 (251)
Q Consensus        70 ~~~la~~i~~n~~f~~i~~~l~~--~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~  146 (251)
                      ...+...+. ......+..+++.  +.+        ++ .|..|.+.++.+...++.          .    ..+..+++
T Consensus        18 ~~~~l~A~~-~g~~~~v~~lL~~~~~~~--------in~~d~~G~t~Lh~~A~~~~~----------~----eiv~lLl~   74 (743)
T TIGR00870        18 EKAFLPAAE-RGDLASVYRDLEEPKKLN--------INCPDRLGRSALFVAAIENEN----------L----ELTELLLN   74 (743)
T ss_pred             HHHHHHHHH-cCCHHHHHHHhccccccC--------CCCcCccchhHHHHHHHhcCh----------H----HHHHHHHh
Confidence            344444444 4555666666666  444        44 567788888833333211          0    12222222


Q ss_pred             hcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCc----cc----cccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          147 SLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSA----MM----KYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~----~v----~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      .+. .+..+....+.++.........++..+...+...    .+    ...+..|.||||+|+..|+.++|++|+++||+
T Consensus        75 ~g~-~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAd  153 (743)
T TIGR00870        75 LSC-RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGAS  153 (743)
T ss_pred             CCC-CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhhccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCC
Confidence            222 2334445555444322233444555554443110    01    11235699999999999999999999999999


Q ss_pred             CCCCC--------------CCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          219 VTLQN--------------MDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       219 ~~~~d--------------~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ++.++              ..|.||||+|+..|+.+++++|++++
T Consensus       154 v~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~g  198 (743)
T TIGR00870       154 VPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDP  198 (743)
T ss_pred             CCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCC
Confidence            99763              36899999999999999999999876

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02730 ankyrin-like protein; Provisional

Probab=99.25  E-value=8.8e-11  Score=107.00  Aligned_cols=106  Identities=15%  Similarity=0.048  Sum_probs=73.6

Q ss_pred             HHHHHHHhcCCCC----ccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcC--CHHHHHHHH
Q 025512          140 SMSHMMESLTNPT----KKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYG--RKECVALLL  213 (251)
Q Consensus       140 ~~~~ll~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g--~~~~v~~Ll  213 (251)
                      .+..+++..++.+    ..+....+.++........+++++|+..|  ++++.+|..|+||||+|+..+  +.++|++|+
T Consensus        22 ~~~~~~~~~~~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~G--Adin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll   99 (672)
T PHA02730         22 KIKLEIETCHNLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRG--VERLCRNNEGLTPLGVYSKRKYVKSQIVHLLI   99 (672)
T ss_pred             HHHHHHHHhcchhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCC--CCCcccCCCCCChHHHHHHcCCCcHHHHHHHH
Confidence            3444455544444    23344555554443334567777788777  677888888888888888866  688888888


Q ss_pred             HCCC--CCCCCCCCCCcHHHHHHH--cCCHHHHHHHHh
Q 025512          214 ENGA--AVTLQNMDGKTPIDVAKL--NSQHDVLKLLEK  247 (251)
Q Consensus       214 ~~Ga--d~~~~d~~G~TpL~~A~~--~g~~~iv~~Ll~  247 (251)
                      ++|+  +++..+..+.+|||.++.  .++.++|++|++
T Consensus       100 ~~~~~~~~~~~~~~~d~~l~~y~~s~n~~~~~vk~Li~  137 (672)
T PHA02730        100 SSYSNASNELTSNINDFDLYSYMSSDNIDLRLLKYLIV  137 (672)
T ss_pred             hcCCCCCcccccccCCchHHHHHHhcCCcHHHHHHHHH
Confidence            8855  447777778888888887  788888888884

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=1.9e-10  Score=99.45  Aligned_cols=92  Identities=21%  Similarity=0.135  Sum_probs=73.7

Q ss_pred             CCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcH
Q 025512          151 PTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQN-MDGKTP  229 (251)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d-~~G~Tp  229 (251)
                      +|..+....|-++.+   ..-+|++||+..|  ++||..|.+||||||+|+.++++.+|+.|++.|+-|.+.. .++.||
T Consensus       579 pNdEGITaLHNAiCa---ghyeIVkFLi~~g--anVNa~DSdGWTPLHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa  653 (752)
T KOG0515|consen  579 PNDEGITALHNAICA---GHYEIVKFLIEFG--ANVNAADSDGWTPLHCAASCNNVPMCKQLVESGAAVFASTLSDMETA  653 (752)
T ss_pred             CCccchhHHhhhhhc---chhHHHHHHHhcC--CcccCccCCCCchhhhhhhcCchHHHHHHHhccceEEeeecccccch
Confidence            344444444444433   3457888889887  8899999999999999999999999999999999988766 688899


Q ss_pred             HHHHH--HcCCHHHHHHHHh
Q 025512          230 IDVAK--LNSQHDVLKLLEK  247 (251)
Q Consensus       230 L~~A~--~~g~~~iv~~Ll~  247 (251)
                      ..-+-  +.|+.+|.+||-.
T Consensus       654 ~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  654 AEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             hhhcchhhhhHHHHHHHHHH
Confidence            98774  6789999999854

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.21  E-value=2e-11  Score=98.31  Aligned_cols=101  Identities=24%  Similarity=0.293  Sum_probs=79.9

Q ss_pred             chhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccc
Q 025512          107 DTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMM  186 (251)
Q Consensus       107 ~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v  186 (251)
                      -++|+..+++.|+..++.++.                       .+..+....++++..++.+++..+  |...   ++|
T Consensus        42 akegh~aivemll~rgarvn~-----------------------tnmgddtplhlaaahghrdivqkl--l~~k---adv   93 (448)
T KOG0195|consen   42 AKEGHVAIVEMLLSRGARVNS-----------------------TNMGDDTPLHLAAAHGHRDIVQKL--LSRK---ADV   93 (448)
T ss_pred             hhcccHHHHHHHHhccccccc-----------------------ccCCCCcchhhhhhcccHHHHHHH--HHHh---ccc
Confidence            467788888888886664332                       344556677787777776554443  4443   788


Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 025512          187 KYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL  235 (251)
Q Consensus       187 ~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  235 (251)
                      |+.+..|+|||||||..|...+++-|+..||.+++.++.|.|||..|.-
T Consensus        94 navnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkakp  142 (448)
T KOG0195|consen   94 NAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAKP  142 (448)
T ss_pred             chhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhch
Confidence            9999999999999999999999999999999999999999999998753

>PF13606 Ank_3: Ankyrin repeat

Probab=99.21  E-value=1.9e-11  Score=65.99  Aligned_cols=30  Identities=50%  Similarity=0.620  Sum_probs=28.3

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 025512          192 KDNTALHYAAGYGRKECVALLLENGAAVTL  221 (251)
Q Consensus       192 ~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~  221 (251)
                      +|+||||+||..|+.++|++||++|+|+|.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn~   30 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVNA   30 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCCC
Confidence            489999999999999999999999999974

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.20  E-value=2.2e-10  Score=78.70  Aligned_cols=79  Identities=30%  Similarity=0.364  Sum_probs=57.7

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      ..+..+++.+.+.+. +....+.++..   +..+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus        11 ~~~~~ll~~~~~~~~-~~~~l~~A~~~---~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~   84 (89)
T PF12796_consen   11 EILKFLLEKGADINL-GNTALHYAAEN---GNLEIVKLLLENG--ADINSQDKNGNTALHYAAENGNLEIVKLLLEHGAD   84 (89)
T ss_dssp             HHHHHHHHTTSTTTS-SSBHHHHHHHT---TTHHHHHHHHHTT--TCTT-BSTTSSBHHHHHHHTTHHHHHHHHHHTTT-
T ss_pred             HHHHHHHHCcCCCCC-CCCHHHHHHHc---CCHHHHHHHHHhc--ccccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            344555555544554 33445555544   3478888888877  67888999999999999999999999999999999


Q ss_pred             CCCCC
Q 025512          219 VTLQN  223 (251)
Q Consensus       219 ~~~~d  223 (251)
                      ++.+|
T Consensus        85 ~~~~n   89 (89)
T PF12796_consen   85 VNIRN   89 (89)
T ss_dssp             TTSS-
T ss_pred             CCCcC
Confidence            99876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.17  E-value=5.1e-11  Score=66.09  Aligned_cols=33  Identities=42%  Similarity=0.659  Sum_probs=31.1

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 025512          192 KDNTALHYAAGYGRKECVALLLENGAAVTLQNM  224 (251)
Q Consensus       192 ~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~  224 (251)
                      +|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            489999999999999999999999999999874

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.16  E-value=1.7e-10  Score=99.94  Aligned_cols=93  Identities=19%  Similarity=0.274  Sum_probs=75.4

Q ss_pred             HHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCC
Q 025512          141 MSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVT  220 (251)
Q Consensus       141 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~  220 (251)
                      +.-++..+.........+.+..+++...++.+++.+|+..+  ..++.+|.+||||||.|+..|+.+++++|+++|++++
T Consensus       181 ~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag--~~~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d  258 (527)
T KOG0505|consen  181 ARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAG--YSVNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMD  258 (527)
T ss_pred             HHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhc--cCcccccccCCCcccHHHHhhhHhHHHHHHHhhcccc
Confidence            33345566655554444555556666667888888888887  5678889999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHH
Q 025512          221 LQNMDGKTPIDVAKL  235 (251)
Q Consensus       221 ~~d~~G~TpL~~A~~  235 (251)
                      ..+..|.||+.+|..
T Consensus       259 ~~t~~g~~p~dv~de  273 (527)
T KOG0505|consen  259 AKTKMGETPLDVADE  273 (527)
T ss_pred             hhhhcCCCCccchhh
Confidence            999999999999875

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.16  E-value=7e-10  Score=80.19  Aligned_cols=74  Identities=36%  Similarity=0.516  Sum_probs=64.4

Q ss_pred             HHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 025512          171 KPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE  246 (251)
Q Consensus       171 ~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  246 (251)
                      .+++++|+..+  ..++..+..|.||+|+|+..++.+++++|+..|.+++..+..|.||+++|...++.+++++|+
T Consensus        53 ~~~~~~ll~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          53 LEIVKLLLEKG--ADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHHHHHcC--CCccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            47777777765  356777888999999999999999999999999999999999999999999999999999875

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02792 ankyrin-like protein; Provisional

Probab=99.15  E-value=1.7e-10  Score=104.12  Aligned_cols=141  Identities=9%  Similarity=0.046  Sum_probs=94.7

Q ss_pred             hhchHHHHHHHHcCCcchHHHHHhhhhccC-------C-hHHHHHHHhcCCCCccCcHHHH--HHHHhcCCCcHHHHHHH
Q 025512          108 TTQYYSTMQQVMQNPQFMTMAERLGNALMQ-------D-PSMSHMMESLTNPTKKDQIEER--MAKIKEDPSLKPILDEI  177 (251)
Q Consensus       108 ~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~-------~-~~~~~ll~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~L  177 (251)
                      ..++++++..|+.+|++++.+...+..++.       . ..+..+++.++++......+..  ...+.. .+.-.+-..+
T Consensus        81 ~n~~lElvk~LI~~GAdvN~~~n~~~~~l~ya~~~~~~~eivk~Ll~~Gad~~~~~~~g~~~~~~~~~~-~~~~~~~~~~  159 (631)
T PHA02792         81 DNIDIELLKLLISKGLEINSIKNGINIVEKYATTSNPNVDVFKLLLDKGIPTCSNIQYGYKIIIEQITR-AEYYNWDDEL  159 (631)
T ss_pred             hcccHHHHHHHHHcCCCcccccCCCCcceeEeecCCCChHHHHHHHHCCCCcccccccCcchhhhhccc-ccccchhhhc
Confidence            457889999999999988777665544311       1 2556667777765433222221  111110 0000000001


Q ss_pred             HhcCCCccccccCCCCchHHHHHHHcC-------CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC--CHHHHHHHHhC
Q 025512          178 ESGGPSAMMKYWNDKDNTALHYAAGYG-------RKECVALLLENGAAVTLQNMDGKTPIDVAKLNS--QHDVLKLLEKD  248 (251)
Q Consensus       178 ~~~~~~~~v~~~d~~G~TpLh~Aa~~g-------~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g--~~~iv~~Ll~~  248 (251)
                      ....-.-.+|+.|..|+||||+|+..+       +.+++++|+.+|++++.+|..|.||||+|+...  ..+|+++|++.
T Consensus       160 ~~~~~~~~i~~~~~~g~t~L~~~i~~~s~~~~~~~~~v~k~Li~~g~~~~~~d~~g~t~l~~~~~~~~i~~ei~~~L~~~  239 (631)
T PHA02792        160 DDYDYDYTTDYDDRMGKTVLYYYIITRSQDGYATSLDVINYLISHEKEMRYYTYREHTTLYYYVDKCDIKREIFDALFDS  239 (631)
T ss_pred             cccccccccccCCCCCCchHHHHHhhCCcccccCCHHHHHHHHhCCCCcCccCCCCChHHHHHHHcccchHHHHHHHHhc
Confidence            100001245778889999999999999       899999999999999999999999999999999  78999999875


Q ss_pred             C
Q 025512          249 A  249 (251)
Q Consensus       249 ~  249 (251)
                      +
T Consensus       240 ~  240 (631)
T PHA02792        240 N  240 (631)
T ss_pred             c
Confidence            3

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.12  E-value=1e-10  Score=104.99  Aligned_cols=127  Identities=19%  Similarity=0.257  Sum_probs=94.7

Q ss_pred             cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCcc
Q 025512          106 FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAM  185 (251)
Q Consensus       106 ~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~  185 (251)
                      .|..|++.+.-+.++...      .....++.+.....+      ...++....+++++.++.+..+++  |...   ..
T Consensus        45 qd~~gfTalhha~Lng~~------~is~llle~ea~ldl------~d~kg~~plhlaaw~g~~e~vkml--l~q~---d~  107 (854)
T KOG0507|consen   45 QDYSGFTLLHHAVLNGQN------QISKLLLDYEALLDL------CDTKGILPLHLAAWNGNLEIVKML--LLQT---DI  107 (854)
T ss_pred             cCccchhHHHHHHhcCch------HHHHHHhcchhhhhh------hhccCcceEEehhhcCcchHHHHH--Hhcc---cC
Confidence            356778888877777332      222223322222211      224455566777777777666665  4444   56


Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          186 MKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       186 v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +|..+..|.||||.|+++||.+++.+|+.+|+|+-++|..+.|+|++|++.|..++|++|++..
T Consensus       108 ~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~  171 (854)
T KOG0507|consen  108 LNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVLDLASRFGRAEVVQMLLQKK  171 (854)
T ss_pred             CCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHHHHHHHhhhhHHHHHHhhhc
Confidence            7888899999999999999999999999999999999999999999999999999999998753

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.12  E-value=6.1e-11  Score=101.13  Aligned_cols=84  Identities=30%  Similarity=0.332  Sum_probs=74.8

Q ss_pred             HHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHH
Q 025512          163 KIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDV  241 (251)
Q Consensus       163 ~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~g~~~i  241 (251)
                      ..+..+++..+-.+++.+   .+++..|.+.+|+||+||..||+++|++|++. +.+++.+|++|+|||+-|...+|.+|
T Consensus       512 ~aa~~GD~~alrRf~l~g---~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDdA~~F~h~~v  588 (622)
T KOG0506|consen  512 YAAKNGDLSALRRFALQG---MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDDAKHFKHKEV  588 (622)
T ss_pred             hhhhcCCHHHHHHHHHhc---ccccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchHhHhcCcHHH
Confidence            334466677777777777   67899999999999999999999999999987 99999999999999999999999999


Q ss_pred             HHHHHhCC
Q 025512          242 LKLLEKDA  249 (251)
Q Consensus       242 v~~Ll~~~  249 (251)
                      +++|.+.+
T Consensus       589 ~k~L~~~~  596 (622)
T KOG0506|consen  589 VKLLEEAQ  596 (622)
T ss_pred             HHHHHHHh
Confidence            99998865

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.11  E-value=2.9e-10  Score=90.80  Aligned_cols=108  Identities=26%  Similarity=0.342  Sum_probs=78.2

Q ss_pred             HHHHHHhcCCCCccCcHHHH---HHHHhcC--CCcHHHHHHHHhcCCC-ccccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 025512          141 MSHMMESLTNPTKKDQIEER---MAKIKED--PSLKPILDEIESGGPS-AMMKYWNDKDNTALHYAAGYGRKECVALLLE  214 (251)
Q Consensus       141 ~~~ll~~~~~~~~~~~~~~~---~~~~~~~--~~~~~~l~~L~~~~~~-~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~  214 (251)
                      +..++..+.+++..+..+.+   ++....+  .....++++|+..+.. .+.+.+|..|+||||+|+..|+.+++++|++
T Consensus        89 ~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~ll~  168 (235)
T COG0666          89 VKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLE  168 (235)
T ss_pred             HHHHHHcCCCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHHHHh
Confidence            34556666666555544443   3333333  1226677777777631 2455668889999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          215 NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       215 ~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      .|++++.++..|.|++++|+..++.+++.+|++.
T Consensus       169 ~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~  202 (235)
T COG0666         169 AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDK  202 (235)
T ss_pred             cCCCCcccccCCCcchhhhcccchHHHHHHHHhc
Confidence            9999998889999999999999998888888774

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.10  E-value=4.8e-10  Score=89.51  Aligned_cols=74  Identities=36%  Similarity=0.500  Sum_probs=65.0

Q ss_pred             HHHHHHhcCCCccccccCCCCchHHHHHHHcCC-----HHHHHHHHHCCC---CCCCCCCCCCcHHHHHHHcCCHHHHHH
Q 025512          173 ILDEIESGGPSAMMKYWNDKDNTALHYAAGYGR-----KECVALLLENGA---AVTLQNMDGKTPIDVAKLNSQHDVLKL  244 (251)
Q Consensus       173 ~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~-----~~~v~~Ll~~Ga---d~~~~d~~G~TpL~~A~~~g~~~iv~~  244 (251)
                      ++.++...+  .+++.+|..|.||||+|+..++     .+++++|++.|+   +.+.+|..|+||||+|+..|+.+++++
T Consensus        88 ~~~~l~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~~~~~~~~~~  165 (235)
T COG0666          88 IVKLLLASG--ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVEL  165 (235)
T ss_pred             HHHHHHHcC--CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCCCchhHHHHHcCchHHHHH
Confidence            334455555  5668899999999999999999     999999999999   666779999999999999999999999


Q ss_pred             HHhC
Q 025512          245 LEKD  248 (251)
Q Consensus       245 Ll~~  248 (251)
                      |++.
T Consensus       166 ll~~  169 (235)
T COG0666         166 LLEA  169 (235)
T ss_pred             HHhc
Confidence            9875

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.10  E-value=5.8e-10  Score=89.92  Aligned_cols=106  Identities=18%  Similarity=0.242  Sum_probs=60.5

Q ss_pred             HHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccc-cCCCCchHHHHHHHcCCHHHHHHHHHCCCCC
Q 025512          141 MSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKY-WNDKDNTALHYAAGYGRKECVALLLENGAAV  219 (251)
Q Consensus       141 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~  219 (251)
                      ...+|......+..+..+-...+.+...+...+++.|+..|  ++||. ++..+.||||+|+..|+.+++++|++.|+..
T Consensus        28 a~~LLs~vr~vn~~D~sGMs~LahAaykGnl~~v~lll~~g--aDvN~~qhg~~YTpLmFAALSGn~dvcrllldaGa~~  105 (396)
T KOG1710|consen   28 ALALLSTVRQVNQRDPSGMSVLAHAAYKGNLTLVELLLELG--ADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDAGARM  105 (396)
T ss_pred             HHHHHHHhhhhhccCCCcccHHHHHHhcCcHHHHHHHHHhC--CCcCcccccccccHHHHHHHcCCchHHHHHHhccCcc
Confidence            33444444444544444444333333444455555555554  34442 2344666777777777777777777777776


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          220 TLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       220 ~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ...|.-|+|+-.+|+..||.+||.++-++
T Consensus       106 ~~vNsvgrTAaqmAAFVG~H~CV~iINN~  134 (396)
T KOG1710|consen  106 YLVNSVGRTAAQMAAFVGHHECVAIINNH  134 (396)
T ss_pred             ccccchhhhHHHHHHHhcchHHHHHHhcc
Confidence            66666677777777777777766665444

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.09  E-value=1.9e-09  Score=72.55  Aligned_cols=69  Identities=32%  Similarity=0.369  Sum_probs=59.7

Q ss_pred             HHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 025512          163 KIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA  233 (251)
Q Consensus       163 ~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  233 (251)
                      +++.+-+..+++++|+.-|  ++++..|+.|-|||.-|++.||..||++||..|||-..+.-+|.+.+..+
T Consensus        39 hyAAD~GQl~ilefli~iG--A~i~~kDKygITPLLsAvwEGH~~cVklLL~~GAdrt~~~PdG~~~~eat  107 (117)
T KOG4214|consen   39 HYAADYGQLSILEFLISIG--ANIQDKDKYGITPLLSAVWEGHRDCVKLLLQNGADRTIHAPDGTALIEAT  107 (117)
T ss_pred             hHhhhcchHHHHHHHHHhc--cccCCccccCCcHHHHHHHHhhHHHHHHHHHcCcccceeCCCchhHHhhc
Confidence            3455666678999999887  78899999999999999999999999999999999999888887766553

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.04  E-value=1.8e-09  Score=78.04  Aligned_cols=89  Identities=34%  Similarity=0.434  Sum_probs=73.5

Q ss_pred             CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 025512          155 DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK  234 (251)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  234 (251)
                      +....+.+....   ..+++++|+..+  .+.+..+..|.||||+|+..+..+++++|+..|++++..+..|.||+|+|+
T Consensus         7 g~t~l~~a~~~~---~~~~i~~li~~~--~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~a~   81 (126)
T cd00204           7 GRTPLHLAASNG---HLEVVKLLLENG--ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAA   81 (126)
T ss_pred             CCCHHHHHHHcC---cHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHH
Confidence            334444444333   347777777776  334777889999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhC
Q 025512          235 LNSQHDVLKLLEKD  248 (251)
Q Consensus       235 ~~g~~~iv~~Ll~~  248 (251)
                      ..++.+++++|+++
T Consensus        82 ~~~~~~~~~~L~~~   95 (126)
T cd00204          82 RNGNLDVVKLLLKH   95 (126)
T ss_pred             HcCcHHHHHHHHHc
Confidence            99999999999885

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.03  E-value=9.2e-10  Score=94.49  Aligned_cols=83  Identities=29%  Similarity=0.368  Sum_probs=69.5

Q ss_pred             HhcCCCcHHHHHHHHhcCCCccccccC-CCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHH
Q 025512          164 IKEDPSLKPILDEIESGGPSAMMKYWN-DKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL  242 (251)
Q Consensus       164 ~~~~~~~~~~l~~L~~~~~~~~v~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv  242 (251)
                      ...-..+...|.+|..|   +++|+.+ ..|.||||.|++.|+.--+++|+-+|||++.+|.+|+||+.+|...||.++.
T Consensus       140 svRt~nlet~LRll~lG---A~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~~GmtP~~~AR~~gH~~la  216 (669)
T KOG0818|consen  140 SVRTGNLETCLRLLSLG---AQANFFHPEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDSSGMTPVDYARQGGHHELA  216 (669)
T ss_pred             HhhcccHHHHHHHHHcc---cccCCCCcccCCchhHHHHhccchhhhhHHhhccCCCCCCCCCCCcHHHHHHhcCchHHH
Confidence            33344455556666666   5667765 4699999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhCC
Q 025512          243 KLLEKDA  249 (251)
Q Consensus       243 ~~Ll~~~  249 (251)
                      +.|++.+
T Consensus       217 eRl~e~~  223 (669)
T KOG0818|consen  217 ERLVEIQ  223 (669)
T ss_pred             HHHHHHH
Confidence            8887643

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.00  E-value=1.3e-09  Score=87.84  Aligned_cols=65  Identities=31%  Similarity=0.272  Sum_probs=60.8

Q ss_pred             ccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQ-NMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       184 ~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ..+|.+|..|.|+|..|++.|+.++|++||+.|||||.. +..+.||||+|+..|+.++.++|++.
T Consensus        36 r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAALSGn~dvcrlllda  101 (396)
T KOG1710|consen   36 RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAALSGNQDVCRLLLDA  101 (396)
T ss_pred             hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHHcCCchHHHHHHhc
Confidence            568999999999999999999999999999999999974 57899999999999999999999874

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.97  E-value=1.7e-09  Score=93.76  Aligned_cols=66  Identities=24%  Similarity=0.406  Sum_probs=60.6

Q ss_pred             CccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          183 SAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       183 ~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ...|+..|..|+||||+|+..||.++++.|+.+|||+.++|..||+|||.|+..|+..++..++++
T Consensus        45 ~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~~q~i~~vlr~  110 (560)
T KOG0522|consen   45 SLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGNEQIITEVLRH  110 (560)
T ss_pred             hceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCCHHHHHHHHHH
Confidence            356788899999999999999999999999999999999999999999999999999888766553

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.94  E-value=2.6e-09  Score=96.88  Aligned_cols=133  Identities=17%  Similarity=0.118  Sum_probs=92.0

Q ss_pred             chHHHHHHHHcCCcchHHHHHhhhhccCChH-HHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccc
Q 025512          110 QYYSTMQQVMQNPQFMTMAERLGNALMQDPS-MSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKY  188 (251)
Q Consensus       110 g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~-~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~  188 (251)
                      ...+++..|+..+++++..... .....++. ...-..++....+-+.++..+++..+++++..+   |+..+  ++++.
T Consensus       195 ~~~~~V~lLl~~gADV~aRa~G-~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl---Ll~~g--Ad~~a  268 (782)
T KOG3676|consen  195 RDAELVRLLLAAGADVHARACG-AFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL---LLAHG--ADPNA  268 (782)
T ss_pred             ccHHHHHHHHHcCCchhhHhhc-cccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH---HHhcC--CCCCc
Confidence            3445566666677766654322 22111111 110111112223345556666666666655554   45554  78999


Q ss_pred             cCCCCchHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          189 WNDKDNTALHYAAGYGRKECVALLLENGAA--VTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       189 ~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad--~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      +|..|+|.||..+..-..++-.+++++|++  ...+|..|.|||-+|+..|..+|.+.+++.
T Consensus       269 qDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  269 QDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             cccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            999999999999999889999999999999  999999999999999999999999888765

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=98.92  E-value=8.6e-10  Score=99.12  Aligned_cols=89  Identities=22%  Similarity=0.228  Sum_probs=73.1

Q ss_pred             cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 025512          156 QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL  235 (251)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  235 (251)
                      ....+.+++.++.   ++..+|+...  ..++..|..|.+|||+|++.|+.++|++|+.++..+|+.+..|.||||.|++
T Consensus        50 fTalhha~Lng~~---~is~llle~e--a~ldl~d~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaq  124 (854)
T KOG0507|consen   50 FTLLHHAVLNGQN---QISKLLLDYE--ALLDLCDTKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQ  124 (854)
T ss_pred             hhHHHHHHhcCch---HHHHHHhcch--hhhhhhhccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhh
Confidence            3444555555554   4444455553  4466678899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCC
Q 025512          236 NSQHDVLKLLEKDA  249 (251)
Q Consensus       236 ~g~~~iv~~Ll~~~  249 (251)
                      .||.+++.+|+++.
T Consensus       125 hgh~dvv~~Ll~~~  138 (854)
T KOG0507|consen  125 HGHLEVVFYLLKKN  138 (854)
T ss_pred             hcchHHHHHHHhcC
Confidence            99999999999875

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.90  E-value=7.5e-09  Score=93.96  Aligned_cols=97  Identities=22%  Similarity=0.238  Sum_probs=76.2

Q ss_pred             cCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCcccccc---------C--------------CCCchHHHHHHHcC
Q 025512          148 LTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYW---------N--------------DKDNTALHYAAGYG  204 (251)
Q Consensus       148 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~---------d--------------~~G~TpLh~Aa~~g  204 (251)
                      +.+..+.+....|+++...+..++.+   |+..|  ++|+.+         |              ..|..||.+||+.+
T Consensus       177 ~~~eeY~GqSaLHiAIv~~~~~~V~l---Ll~~g--ADV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~n  251 (782)
T KOG3676|consen  177 YTSEEYYGQSALHIAIVNRDAELVRL---LLAAG--ADVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTN  251 (782)
T ss_pred             hhhHhhcCcchHHHHHHhccHHHHHH---HHHcC--CchhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcC
Confidence            33456677888888888877655554   45444  445443         1              23789999999999


Q ss_pred             CHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          205 RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       205 ~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +.+|+++|+++|||++.+|..|+|-||..+..-..++-.+++++.
T Consensus       252 q~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~~g  296 (782)
T KOG3676|consen  252 QPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALELG  296 (782)
T ss_pred             CHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999887778888777653

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=98.90  E-value=3.1e-09  Score=100.35  Aligned_cols=88  Identities=16%  Similarity=0.095  Sum_probs=68.5

Q ss_pred             CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcC---------CHHHHHHHHHCCCCC------
Q 025512          155 DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYG---------RKECVALLLENGAAV------  219 (251)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g---------~~~~v~~Ll~~Gad~------  219 (251)
                      +....+.++..++   .+++++|+..+  ++++.+|..|+||||+|+..+         ...|.+++++.++..      
T Consensus       175 g~tpL~~Aa~~~~---~~iv~lLl~~g--adin~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el  249 (743)
T TIGR00870       175 GESPLNAAACLGS---PSIVALLSEDP--ADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKEL  249 (743)
T ss_pred             cccHHHHHHHhCC---HHHHHHHhcCC--cchhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhh
Confidence            3444555554444   45666667765  678999999999999999987         345677777776654      


Q ss_pred             -CCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          220 -TLQNMDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       220 -~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                       +.+|.+|.||||+|+..|+.+++++|++
T Consensus       250 ~~i~N~~g~TPL~~A~~~g~~~l~~lLL~  278 (743)
T TIGR00870       250 EVILNHQGLTPLKLAAKEGRIVLFRLKLA  278 (743)
T ss_pred             hhhcCCCCCCchhhhhhcCCccHHHHHHH
Confidence             6779999999999999999999999987

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.85  E-value=5.8e-09  Score=79.32  Aligned_cols=65  Identities=23%  Similarity=0.211  Sum_probs=61.9

Q ss_pred             ccccccCCCCchHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENG-AAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       184 ~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      .++|.+|..|||||++|+..|..+.|.||+.+| ++|...|..|.+++.+|.+.|+.++|..|.++
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~   68 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAFVGVTDESSLDAAQLAEKGGAQAFVHSLFEN   68 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCcccccccccccchHHHHHHhcChHHHHHHHHHH
Confidence            468999999999999999999999999999999 99999999999999999999999999998764

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.83  E-value=1.3e-09  Score=98.88  Aligned_cols=62  Identities=26%  Similarity=0.289  Sum_probs=29.7

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          187 KYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQN-MDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       187 ~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      |..|..|+|+||+++..+..+++++||++|+|++.+| ..|+||||-|...|+.+|+-+|+++
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~  108 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSK  108 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhc
Confidence            3344444444444444444444444444444444444 2344444444444444444444443

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=98.81  E-value=4e-09  Score=65.89  Aligned_cols=37  Identities=38%  Similarity=0.562  Sum_probs=22.9

Q ss_pred             HHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          212 LLENG-AAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       212 Ll~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ||++| ++++.+|..|.||||+|+..|+.++|++|+++
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~   38 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQN   38 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHC
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHC
Confidence            67888 99999999999999999999999999999964

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=98.73  E-value=2.9e-08  Score=61.51  Aligned_cols=44  Identities=30%  Similarity=0.380  Sum_probs=32.2

Q ss_pred             CCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHH
Q 025512          168 PSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLL  213 (251)
Q Consensus       168 ~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll  213 (251)
                      .+..+++++|+..+  .+++.+|.+|+||||+|+..|+.+++++||
T Consensus        11 ~g~~~~~~~Ll~~~--~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen   11 SGNLEIVKLLLEHG--ADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             TT-HHHHHHHHHTT--SGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             hCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            34466777777776  678999999999999999999999999996

...

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.71  E-value=3.8e-08  Score=86.14  Aligned_cols=91  Identities=25%  Similarity=0.348  Sum_probs=81.6

Q ss_pred             HHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 025512          159 ERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ  238 (251)
Q Consensus       159 ~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~  238 (251)
                      ..+.+++...+..+++++++.++++..++..|..|.|+||.|+..++..++++|++.||.+...|..|.||-.-|.+.|.
T Consensus       900 ~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d  979 (1004)
T KOG0782|consen  900 CSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGD  979 (1004)
T ss_pred             hhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchhheecccCCCChHHHHHhcCC
Confidence            34455555566678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 025512          239 HDVLKLLEKDA  249 (251)
Q Consensus       239 ~~iv~~Ll~~~  249 (251)
                      .+++.||...+
T Consensus       980 ~dlaayle~rq  990 (1004)
T KOG0782|consen  980 PDLAAYLESRQ  990 (1004)
T ss_pred             chHHHHHhhhh
Confidence            99999998754

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.69  E-value=1.4e-08  Score=94.68  Aligned_cols=59  Identities=34%  Similarity=0.452  Sum_probs=46.5

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          191 DKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       191 ~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ..|.|+||.|+..|...++++|++.|+++|..|..|+||||.+...|+...+.+|+++.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~  712 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRG  712 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhcccc
Confidence            34678888888888888888888888888888888888888888888888777776643

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=98.63  E-value=1.2e-07  Score=88.37  Aligned_cols=94  Identities=19%  Similarity=0.185  Sum_probs=77.3

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC---
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN---  215 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~---  215 (251)
                      ..+..+++.+++++..+..+.+..+++...+..+++++|+..|  ++++.+|..|+||||+|+..|+.+++++|+++   
T Consensus        96 ~~vk~LL~~Gadin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~G--advn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~~~  173 (664)
T PTZ00322         96 VGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFG--ADPTLLDKDGKTPLELAEENGFREVVQLLSRHSQC  173 (664)
T ss_pred             HHHHHHHHCCCCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHCCcHHHHHHHHhCCCc
Confidence            5677778888888876665555555555556677888888887  67889999999999999999999999999999   


Q ss_pred             ----CCCCCCCCCCCCcHHHHHH
Q 025512          216 ----GAAVTLQNMDGKTPIDVAK  234 (251)
Q Consensus       216 ----Gad~~~~d~~G~TpL~~A~  234 (251)
                          |++++..+..|.+|+..+.
T Consensus       174 ~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        174 HFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             ccccCCCCCccccCCCCccchhh
Confidence                9999999998988877664

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=98.59  E-value=3e-08  Score=90.16  Aligned_cols=82  Identities=23%  Similarity=0.365  Sum_probs=67.0

Q ss_pred             CccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCC-CCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q 025512          152 TKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWND-KDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI  230 (251)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL  230 (251)
                      +.++.++....++.....-..++++|+++|  +++..+|+ .|+||||.|.+.|+++|+-+||.+|+.+.++|++|.+||
T Consensus        46 nikD~~GR~alH~~~S~~k~~~l~wLlqhG--idv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglspl  123 (1267)
T KOG0783|consen   46 NIKDRYGRTALHIAVSENKNSFLRWLLQHG--IDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPL  123 (1267)
T ss_pred             hHHHhhccceeeeeeccchhHHHHHHHhcC--ceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHH
Confidence            334444444444444555567899999998  66777775 699999999999999999999999999999999999999


Q ss_pred             HHHHH
Q 025512          231 DVAKL  235 (251)
Q Consensus       231 ~~A~~  235 (251)
                      .+-++
T Consensus       124 q~~~r  128 (1267)
T KOG0783|consen  124 QFLSR  128 (1267)
T ss_pred             HHHhh
Confidence            99877

>PF13606 Ank_3: Ankyrin repeat

Probab=98.44  E-value=2.6e-07  Score=49.72  Aligned_cols=25  Identities=28%  Similarity=0.553  Sum_probs=23.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          225 DGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       225 ~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +|+||||+|++.|+.++|++|+++.
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~g   25 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHG   25 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            5899999999999999999999864

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.32  E-value=5.7e-07  Score=84.48  Aligned_cols=110  Identities=15%  Similarity=0.183  Sum_probs=69.2

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      ..+..+|..+++-.+++........+...+.+.++++.|+..|...+-..-.+-|-.||++|+..||.+.++.|++.|.|
T Consensus       838 ~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsd  917 (2131)
T KOG4369|consen  838 RVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSD  917 (2131)
T ss_pred             hHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccch
Confidence            34555555666655555555555555566667777777776663322222234566777777777777777777777777


Q ss_pred             CCCCC-CCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          219 VTLQN-MDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       219 ~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      +|.+- .+-+|+|-+|+..|+.++|.+|+.+
T Consensus       918 iNaqIeTNrnTaltla~fqgr~evv~lLLa~  948 (2131)
T KOG4369|consen  918 INAQIETNRNTALTLALFQGRPEVVFLLLAA  948 (2131)
T ss_pred             hccccccccccceeeccccCcchHHHHHHHH
Confidence            77654 4556777777777777777777654

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=98.29  E-value=6.1e-07  Score=84.32  Aligned_cols=64  Identities=27%  Similarity=0.219  Sum_probs=31.4

Q ss_pred             ccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCC-CCCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQ-NMDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       184 ~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~-d~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                      +++..+|+.|.+||.+|+-.||..+|+.|+++.++++.+ |+.+.|+|.+||..|..++|++|+.
T Consensus       781 aniehrdkkgf~plImaatagh~tvV~~llk~ha~veaQsdrtkdt~lSlacsggr~~vvelLl~  845 (2131)
T KOG4369|consen  781 ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADVEAQSDRTKDTMLSLACSGGRTRVVELLLN  845 (2131)
T ss_pred             ccccccccccchhhhhhcccCchHHHHHHHhhhhhhhhhcccccCceEEEecCCCcchHHHHHHH
Confidence            344444555555555555555555555555555554443 2444455555555555555554443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.22  E-value=2.9e-06  Score=71.30  Aligned_cols=52  Identities=31%  Similarity=0.390  Sum_probs=24.3

Q ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       197 Lh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      |..||+.|..+.|++|++.|.+||..|+...+||.+|+..||.++|++|+++
T Consensus        40 lceacR~GD~d~v~~LVetgvnVN~vD~fD~spL~lAsLcGHe~vvklLLen   91 (516)
T KOG0511|consen   40 LCEACRAGDVDRVRYLVETGVNVNAVDRFDSSPLYLASLCGHEDVVKLLLEN   91 (516)
T ss_pred             HHHHhhcccHHHHHHHHHhCCCcchhhcccccHHHHHHHcCcHHHHHHHHHc
Confidence            3444444444444444444444444444444444444444444444444443

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.22  E-value=1.7e-06  Score=47.60  Aligned_cols=25  Identities=40%  Similarity=0.635  Sum_probs=23.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          225 DGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       225 ~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +|+||||+|+..|+.+|+++|+++.
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~g   25 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHG   25 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCc
Confidence            5899999999999999999999853

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=97.92  E-value=1.2e-05  Score=75.51  Aligned_cols=77  Identities=29%  Similarity=0.393  Sum_probs=66.5

Q ss_pred             CCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 025512          168 PSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE  246 (251)
Q Consensus       168 ~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  246 (251)
                      .....+.++|+..+  +++|..|..|+||||.+...|+...+.+|+++||+.++.+.+|++||++|....+.+++-+|.
T Consensus       666 ~~~~~~~e~ll~~g--a~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~~~~~~d~~~l~~  742 (785)
T KOG0521|consen  666 TGDSGAVELLLQNG--ADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAMEAANADIVLLLR  742 (785)
T ss_pred             cchHHHHHHHHhcC--CcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHhhhccccHHHHHh
Confidence            34445666777776  568999999999999999999999999999999999999999999999998887777776554

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=97.72  E-value=7.4e-05  Score=66.07  Aligned_cols=79  Identities=24%  Similarity=0.378  Sum_probs=62.7

Q ss_pred             CCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC--CCCCCCCCCcHHHHHHHcCCHHHHHH
Q 025512          167 DPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA--VTLQNMDGKTPIDVAKLNSQHDVLKL  244 (251)
Q Consensus       167 ~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad--~~~~d~~G~TpL~~A~~~g~~~iv~~  244 (251)
                      ..++.++.+.-..+|   .+-.++.+-+|.||+|+..|+-++|+|+|++|-.  ++..|..|.|+||-|+..++..++++
T Consensus       876 ~~D~~klqE~h~~gg---~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~  952 (1004)
T KOG0782|consen  876 SSDLMKLQETHLNGG---SLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQL  952 (1004)
T ss_pred             hccHHHHHHHHhcCC---ceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHH
Confidence            334444444444554   2344677889999999999999999999999853  56778999999999999999999999


Q ss_pred             HHhC
Q 025512          245 LEKD  248 (251)
Q Consensus       245 Ll~~  248 (251)
                      |++.
T Consensus       953 lvda  956 (1004)
T KOG0782|consen  953 LVDA  956 (1004)
T ss_pred             HHhc
Confidence            9874

>smart00248 ANK ankyrin repeats

Probab=97.72  E-value=6.5e-05  Score=38.75  Aligned_cols=29  Identities=45%  Similarity=0.638  Sum_probs=25.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCC
Q 025512          192 KDNTALHYAAGYGRKECVALLLENGAAVT  220 (251)
Q Consensus       192 ~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~  220 (251)
                      .|.||||+|+..++.+++++|+++|.+++
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~~~~~   29 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKGADIN   29 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            37899999999999999999999988764

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.58  E-value=3.2e-05  Score=72.66  Aligned_cols=64  Identities=31%  Similarity=0.399  Sum_probs=37.7

Q ss_pred             ccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCC------CCCCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTL------QNMDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       184 ~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~------~d~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                      ..++.+|..||||||||+.+||..++..|++.|++...      ..-.|.|+-.+|..+|+..+.-+|-+
T Consensus       632 ~ai~i~D~~G~tpL~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse  701 (975)
T KOG0520|consen  632 VAIDIRDRNGWTPLHWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSE  701 (975)
T ss_pred             cccccccCCCCcccchHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhh
Confidence            34555666666666666666666666666655544332      22346666666666666666666544

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=97.58  E-value=5.1e-05  Score=65.67  Aligned_cols=58  Identities=21%  Similarity=0.319  Sum_probs=54.2

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          191 DKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       191 ~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      .++.-++++|++.|.+..++.+.-.|.|++.+|.+.+|+||+|+..|+.+++++|++.
T Consensus       504 ~~~~i~~~~aa~~GD~~alrRf~l~g~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~  561 (622)
T KOG0506|consen  504 NDTVINVMYAAKNGDLSALRRFALQGMDLETKDYDDRTALHVAAAEGHVEVVKFLLNA  561 (622)
T ss_pred             ccchhhhhhhhhcCCHHHHHHHHHhcccccccccccchhheeecccCceeHHHHHHHH
Confidence            4466789999999999999999999999999999999999999999999999999874

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=97.56  E-value=0.00018  Score=62.64  Aligned_cols=62  Identities=31%  Similarity=0.298  Sum_probs=54.4

Q ss_pred             cccCCCCchH------HHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          187 KYWNDKDNTA------LHYAAGYGRKECVALLLENGAAVTLQN-MDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       187 ~~~d~~G~Tp------Lh~Aa~~g~~~~v~~Ll~~Gad~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ..+|.+|.|+      ||-.++.|+.+.+-.||..||++|..+ ..|.||||+|++.|+..-+++|.-+
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~hpekg~TpLHvAAk~Gq~~Q~ElL~vY  189 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFHPEKGNTPLHVAAKAGQILQAELLAVY  189 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCCcccCCchhHHHHhccchhhhhHHhhc
Confidence            4456666654      899999999999999999999999988 7899999999999999999988754

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.56  E-value=0.00029  Score=61.43  Aligned_cols=44  Identities=34%  Similarity=0.601  Sum_probs=41.2

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 025512          191 DKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK  234 (251)
Q Consensus       191 ~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  234 (251)
                      .--.|+||+|+..|..+||.+||+.|+|+..+|..|+||+.++.
T Consensus       428 ~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  428 YLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             cccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            33579999999999999999999999999999999999999987

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=97.46  E-value=8e-05  Score=70.11  Aligned_cols=85  Identities=14%  Similarity=0.228  Sum_probs=61.6

Q ss_pred             HHHHHhcCCCcHHHHHHHHhc-CCCccccccCCCCchHHHHHHHcCCHHHHHHH-HHCCCCCCCCCCCCCcHHHHHHHcC
Q 025512          160 RMAKIKEDPSLKPILDEIESG-GPSAMMKYWNDKDNTALHYAAGYGRKECVALL-LENGAAVTLQNMDGKTPIDVAKLNS  237 (251)
Q Consensus       160 ~~~~~~~~~~~~~~l~~L~~~-~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~L-l~~Gad~~~~d~~G~TpL~~A~~~g  237 (251)
                      ++..+.....+..+++.+++. +  ..-...|.+|.--+|+++.. +.+++-+| +-.|..++++|..||||||||+..|
T Consensus       576 lllhL~a~~lyawLie~~~e~~~--~~~~eld~d~qgV~hfca~l-g~ewA~ll~~~~~~ai~i~D~~G~tpL~wAa~~G  652 (975)
T KOG0520|consen  576 LLLHLLAELLYAWLIEKVIEWAG--SGDLELDRDGQGVIHFCAAL-GYEWAFLPISADGVAIDIRDRNGWTPLHWAAFRG  652 (975)
T ss_pred             HHHHHHHHHhHHHHHHHHhcccc--cCchhhcccCCChhhHhhhc-CCceeEEEEeecccccccccCCCCcccchHhhcC
Confidence            344445555667777777774 3  22234577788888885554 45555454 4569999999999999999999999


Q ss_pred             CHHHHHHHHh
Q 025512          238 QHDVLKLLEK  247 (251)
Q Consensus       238 ~~~iv~~Ll~  247 (251)
                      +..++..|++
T Consensus       653 ~e~l~a~l~~  662 (975)
T KOG0520|consen  653 REKLVASLIE  662 (975)
T ss_pred             HHHHHHHHHH
Confidence            9999988874

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.28  E-value=0.00089  Score=56.70  Aligned_cols=58  Identities=26%  Similarity=0.305  Sum_probs=47.3

Q ss_pred             HHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHH
Q 025512          171 KPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI  230 (251)
Q Consensus       171 ~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL  230 (251)
                      .+.++.|+.-|  .+||.+|.....||.+|+..||..+|++|+++||-...-..+|...+
T Consensus        49 ~d~v~~LVetg--vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC~  106 (516)
T KOG0511|consen   49 VDRVRYLVETG--VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRCH  106 (516)
T ss_pred             HHHHHHHHHhC--CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchhh
Confidence            45566667665  67899999999999999999999999999999997765556666543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.61  E-value=0.016  Score=54.13  Aligned_cols=101  Identities=18%  Similarity=0.141  Sum_probs=72.4

Q ss_pred             hHHHHHHHhcCC----CCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 025512          139 PSMSHMMESLTN----PTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLE  214 (251)
Q Consensus       139 ~~~~~ll~~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~  214 (251)
                      |.++.+++....    .+..+..+.....++.+.+..+++++|+.....  +       .-+|-+|+..|..++|++++.
T Consensus        39 ~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~--~-------gdALL~aI~~~~v~~VE~ll~  109 (822)
T KOG3609|consen   39 PLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE--E-------GDALLLAIAVGSVPLVELLLV  109 (822)
T ss_pred             HHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc--c-------chHHHHHHHHHHHHHHHHHHh
Confidence            555555554433    455566666666667777888888888876411  1       457888999999999999998


Q ss_pred             CCCCC----------CCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          215 NGAAV----------TLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       215 ~Gad~----------~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      +-...          ...-..+.|||.+|+..++.+|+++|++.
T Consensus       110 ~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~k  153 (822)
T KOG3609|consen  110 HFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTR  153 (822)
T ss_pred             cccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHc
Confidence            73332          12235678999999999999999999874

>smart00248 ANK ankyrin repeats

Probab=96.52  E-value=0.0042  Score=31.44  Aligned_cols=25  Identities=40%  Similarity=0.655  Sum_probs=22.3

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          225 DGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       225 ~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .|.||+|+|+..++.+++++|+++.
T Consensus         1 ~~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        1 DGRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4789999999999999999998753

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=96.52  E-value=0.005  Score=54.96  Aligned_cols=61  Identities=28%  Similarity=0.381  Sum_probs=47.8

Q ss_pred             CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCC
Q 025512          155 DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVT  220 (251)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~  220 (251)
                      +....|+++..++..+..+|  +-.+   +++-.+|..|+|+|.||-..|.-+|+..|+++|+..+
T Consensus       661 grt~LHLa~~~gnVvl~QLL--iWyg---~dv~~rda~g~t~l~yar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  661 GRTALHLAARKGNVVLAQLL--IWYG---VDVMARDAHGRTALFYARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             CcchhhhhhhhcchhHHHHH--HHhC---ccceecccCCchhhhhHhhcccHHHHHHHHHcCCCcc
Confidence            35566777766666555555  3333   6778899999999999999999999999999998644

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=96.44  E-value=0.0039  Score=55.05  Aligned_cols=54  Identities=15%  Similarity=0.230  Sum_probs=44.5

Q ss_pred             hHHHHHHHcCCHHHHHHH--HHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          195 TALHYAAGYGRKECVALL--LENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       195 TpLh~Aa~~g~~~~v~~L--l~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      -|||+++.....+-...+  .+.+..++.+|..|+||||+|+..|+..++++|+.+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a   77 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSA   77 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhc
Confidence            469999988877655553  334678899999999999999999999999988874

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.20  E-value=0.0079  Score=56.06  Aligned_cols=61  Identities=18%  Similarity=0.124  Sum_probs=54.9

Q ss_pred             CccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 025512          183 SAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  250 (251)
Q Consensus       183 ~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~  250 (251)
                      ..++|++|.-|+++|++|..+.+.+++++|+++...+       ..+|.+|+..|..++|++|+.|+.
T Consensus        52 ~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~~-------gdALL~aI~~~~v~~VE~ll~~~~  112 (822)
T KOG3609|consen   52 KLNINCRDPLGRLALHIAIDNENLELQELLLDTSSEE-------GDALLLAIAVGSVPLVELLLVHFV  112 (822)
T ss_pred             ccchhccChHhhhceecccccccHHHHHHHhcCcccc-------chHHHHHHHHHHHHHHHHHHhccc
Confidence            3688999999999999999999999999999987665       348999999999999999999863

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=94.16  E-value=0.15  Score=39.56  Aligned_cols=72  Identities=14%  Similarity=0.067  Sum_probs=53.2

Q ss_pred             CCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q 025512          151 PTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQN  223 (251)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d  223 (251)
                      ++..+.++.+....+......+.+.+|+..| .+.|...|..|.+++.+|-..|+.++|+.|.+.-.+-...+
T Consensus         5 in~rD~fgWTalmcaa~eg~~eavsyllgrg-~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~ets~p~   76 (223)
T KOG2384|consen    5 INARDAFGWTALMCAAMEGSNEAVSYLLGRG-VAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDRETSHPM   76 (223)
T ss_pred             ccchhhhcchHHHHHhhhcchhHHHHHhccC-cccccccccccchHHHHHHhcChHHHHHHHHHHhccCCCcc
Confidence            4455555555555555555566777777776 36788899999999999999999999999999855544444

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=90.17  E-value=0.57  Score=30.75  Aligned_cols=46  Identities=17%  Similarity=0.236  Sum_probs=27.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          196 ALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       196 pLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      -|..|...|+.++++.+++.+ .++      ...+..|+...+.+++++|++.
T Consensus         9 tl~~Ai~GGN~eII~~c~~~~-~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    9 TLEYAIIGGNFEIINICLKKN-KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHhCCCHHHHHHHHHHh-ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            456666666666666666543 111      2356666666666666666553

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=88.24  E-value=1.5  Score=35.19  Aligned_cols=45  Identities=18%  Similarity=0.253  Sum_probs=28.8

Q ss_pred             CHHHHHHHHHCC-CCCCCC---CCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          205 RKECVALLLENG-AAVTLQ---NMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       205 ~~~~v~~Ll~~G-ad~~~~---d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ...+++++|.+| ++||.+   -..|.|-|+-|...++.+++.+|+++.
T Consensus       229 ~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~G  277 (284)
T PF06128_consen  229 SYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYG  277 (284)
T ss_pred             cHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcC
Confidence            456666677766 455542   356677777777777777777776654

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=84.26  E-value=1.6  Score=38.90  Aligned_cols=43  Identities=14%  Similarity=0.138  Sum_probs=35.8

Q ss_pred             HHHHHHHHHCCCCCCC------CCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          206 KECVALLLENGAAVTL------QNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       206 ~~~v~~Ll~~Gad~~~------~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ...+++|.+++.+.|.      .+..-.|+||+|+..|...||.+|+++
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Lee  452 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEE  452 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHh
Confidence            5678999999887754      345577999999999999999998875

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=84.20  E-value=2.4  Score=32.90  Aligned_cols=47  Identities=21%  Similarity=0.221  Sum_probs=41.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          196 ALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       196 pLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      -|.+|+..|....|.-.+++|.+++.      +.|..|+...|..|+.+++++
T Consensus       146 hl~~a~~kgll~F~letlkygg~~~~------~vls~Av~ynhRkIL~yfi~q  192 (192)
T PF03158_consen  146 HLEKAAAKGLLPFVLETLKYGGNVDI------IVLSQAVKYNHRKILDYFIRQ  192 (192)
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCcccH------HHHHHHHHhhHHHHHHHhhcC
Confidence            46789999999999999999998864      799999999999999998763

These proteins may be involved in promoting survival of infected macrophages [].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=83.28  E-value=2.8  Score=33.67  Aligned_cols=56  Identities=23%  Similarity=0.263  Sum_probs=44.3

Q ss_pred             HHHhcCCCcHHHHHHHHhcCCCcccccc---CCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          162 AKIKEDPSLKPILDEIESGGPSAMMKYW---NDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       162 ~~~~~~~~~~~~l~~L~~~~~~~~v~~~---d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      -.+..+.....+|++++..|- ++||..   -+.|.|-|--|...+..+++.+||++||-
T Consensus       221 Y~LS~h~a~~kvL~~Fi~~Gl-v~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~  279 (284)
T PF06128_consen  221 YLLSEHSASYKVLEYFINRGL-VDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAI  279 (284)
T ss_pred             HHHhhcCCcHHHHHHHHhccc-cccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCcc
Confidence            345567777888888887763 455532   46699999999999999999999999994

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	251
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		3e-08
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		9e-08
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-07
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		1e-06
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-06
3lvq_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		4e-05
2b0o_E	301	Crystal Structure Of Uplc1 Gap Domain Length = 301		4e-05
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		7e-05
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		1e-04
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-04
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		2e-04
1dcq_A	278	Crystal Structure Of The Arf-Gap Domain And Ankyrin		2e-04
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		2e-04
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		2e-04
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-04
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		3e-04
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		3e-04
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		3e-04
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		3e-04
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		3e-04
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		3e-04
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		4e-04
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		5e-04
1uoh_A	226	Human Gankyrin Length = 226		5e-04
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		5e-04
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		8e-04
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		8e-04
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		9e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
           T LHYAA  G KE V LL+  GA V   + DG+TP+D+A+ +   +++KLLEK
Sbjct: 105 TPLHYAAKEGHKEIVKLLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLLEK 157

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 36/53 (67%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
           T LH+AA  G KE V LL+  GA V   + DG+TP+D+A+ +   +V+KLLEK
Sbjct: 105 TPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEK 157

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 35/53 (66%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
           T LHYAA  G KE V LLL  GA     + DG+TP+D+A+ +   +++KLLEK
Sbjct: 105 TPLHYAAENGHKEIVKLLLSKGADPNTSDSDGRTPLDLAREHGNEEIVKLLEK 157

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 34/53 (64%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
           T LH AA  G KE V LLL  GA     + DG+TP+D+A+ +   +V+KLLEK
Sbjct: 105 TPLHLAAENGHKEVVKLLLSQGADPNTSDSDGRTPLDLAREHGNEEVVKLLEK 157

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 33/53 (62%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
           NT LH AA  G  E V LLL  GA V  ++ DG TP  +AK N  H+++KLL+
Sbjct: 43  NTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD 95

>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Length = 497

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
           NTALHYAA Y + +C+ LLL+  A V   N  G+T +D+A+     +  +LLE+
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 261

>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain Length = 301

Iteration: 1
 Score = 44.7 bits (104), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
           NTALHYAA Y + +C+ LLL+  A V   N  G+T +D+A+     +  +LLE+
Sbjct: 227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 44.3 bits (103), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 27/42 (64%)
Query: 197 LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ 238
           LH AA   R +CV L L   + VTL+N +G+TP+  A LNSQ
Sbjct: 181 LHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQ 222

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 16/122 (13%)
Query: 144 MMESLTNPTKKDQIEERMAK-----IKEDPSLKPILDEIESGGPSAMMKYW-------ND 191
           M+ +L    K D+++ER+        + D   +  L    S G + ++++        ND
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 192 KDNTA---LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV-LKLLEK 247
           KD+     LH AA  GR E V  LL  GA V   N +G TP+  A   ++H++ + LLE 
Sbjct: 69  KDDAGWSPLHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 248 DA 249
            A
Sbjct: 129 GA 130

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
           DKD  T LH AA  G  E V +LL+ GA V  Q+  GKTP D+A  N   D+ ++L+K A
Sbjct: 98  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVLQKAA 157

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 34/54 (62%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
           +T LH AA +G  E V +LL+NGA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|1DCQ|A Chain A, Crystal Structure Of The Arf-Gap Domain And Ankyrin Repeats Of Papbeta Length = 278

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)
Query: 192 KDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK-LNSQH 239
           K +TALHY       EC+ LLL   A++ + N  G+TP+D+AK L  +H
Sbjct: 204 KGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEH 252

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           T LH AA  G  E V LLLE GA V  ++ +G+TP+ +A  N   +V+KLL
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           T LH AA  G  E V LLLE GA V  ++ +G+TP+ +A  N   +V+KLL
Sbjct: 4   TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 251
           T LH AA  G+ E   LLL++GA  T +N DG TP+D+ K +   D+  LL  DA L
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAAL 165

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 234
           NTALH+A   G    ++LLLE GA V  QN+ G++ +D+AK
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAK 218

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 251
           T LH AA  G+ E   LLL++GA  T +N DG TP+D+ K +   D+  LL  DA L
Sbjct: 112 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAAL 167

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 192 KDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
           K NT LH AA Y   E V +LL++GA V   + DG TP+ +A L    +++++L K
Sbjct: 46  KGNTPLHLAADYDHLEIVEVLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLK 101

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 188 YWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
           Y ND  +T LH AA YG  E V +LL++GA V  Q+  GKT  D++  N   D+ ++L+
Sbjct: 109 YDNDG-HTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/60 (45%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 191 DKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
           DKD  T LH AA  G  E V +LL+ GA V  Q+  GKTP D+A      D+ ++L+K A
Sbjct: 98  DKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVLQKAA 157

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAFL 251
           T LH AA  G+ E   LLL++GA  T +N DG TP+D+ K +   D+  LL  DA L
Sbjct: 114 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAAL 169

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
           +D+ +T LH AA  G  E V +LL++GA V  ++ DG TP+ +A  N   +++++L K
Sbjct: 44  DDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLK 101

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 190 NDKDNTA---LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV-LKLL 245
           NDKD+     LH AA  GR E V  LL  GA V   N +G TP+  A   ++H++ + LL
Sbjct: 68  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 127
Query: 246 EKDA 249
           E  A
Sbjct: 128 EGGA 131

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%)
Query: 190 NDKDNTA---LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV-LKLL 245
           NDKD+     LH AA  GR E V  LL  GA V   N +G TP+  A   ++H++ + LL
Sbjct: 67  NDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLL 126
Query: 246 EKDA 249
           E  A
Sbjct: 127 EGGA 130

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 41.2 bits (95), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
           T LH AA  G  E V +LL+NGA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 115 TPLHLAAKRGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%)
Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
           T LH  A YG  E V +LL++GA V  Q+  GKT  D++  N   D+ ++L+K
Sbjct: 82  TPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 134

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 144 MMESLTNPTKKDQIEERMAK-----IKEDPSLKPILDEIESGGPSAMMKYW-------ND 191
           M+ +L    K D+++ER+        + D   +  L    S G + ++++        ND
Sbjct: 9   MICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVND 68
Query: 192 KDNTA---LHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV-LKLLEK 247
           KD+     LH AA  G  E V  LL  GA V   N +G TP+  A   ++H++ + LLE 
Sbjct: 69  KDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG 128
Query: 248 DA 249
            A
Sbjct: 129 GA 130

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 40.4 bits (93), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 184 AMMKYWND---KDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS 237
            ++KY  D   +DN   T LH AA  G  E V +LL++GA V  Q+  GKT  D++  N 
Sbjct: 65  VLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNG 124
Query: 238 QHDVLKLLEK 247
             D+ ++L+K
Sbjct: 125 NEDLAEILQK 134

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	3e-17
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	7e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	2e-11
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-04
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-15
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	4e-11
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	7e-10
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	3e-09
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-06
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-14
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	4e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-07
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-06
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	1e-14
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	3e-13
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	6e-12
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-08
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-06
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-14
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	4e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-12
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-11
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-04
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-14
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-10
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-08
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	2e-07
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-05
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-14
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	4e-12
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	7e-11
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-10
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-07
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-14
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	5e-12
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	1e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-14
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	2e-12
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-11
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	3e-09
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-14
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-12
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-11
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	4e-06
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-14
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-12
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	1e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	7e-11
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-14
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-12
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-11
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	1e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-08
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	5e-04
3v30_A	172	DNA-binding protein rfxank; structural genomics co	5e-14
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-12
3v30_A	172	DNA-binding protein rfxank; structural genomics co	3e-10
3v30_A	172	DNA-binding protein rfxank; structural genomics co	4e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	6e-14
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-12
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	8e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-11
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	9e-10
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-05
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-13
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	8e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	9e-12
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	3e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	5e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-11
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-07
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	4e-13
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	7e-06
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-13
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-12
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-11
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-09
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	2e-04
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	2e-13
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-12
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	5e-11
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	3e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	2e-13
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	4e-06
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	3e-13
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-12
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-11
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-10
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	5e-09
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-05
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-13
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	5e-12
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	4e-09
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	4e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-13
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	5e-12
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	7e-11
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-10
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	9e-07
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-06
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-05
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	5e-13
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	2e-12
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-09
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-13
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-11
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-08
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-07
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	2e-06
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	5e-05
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-13
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-12
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	2e-11
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	3e-10
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	8e-13
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-11
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-05
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-04
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-13
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-12
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	3e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	6e-11
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-13
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	1e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-11
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	9e-09
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-04
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	9e-13
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	6e-12
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	2e-07
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-12
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	1e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-11
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-10
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-08
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	8e-07
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-12
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	6e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-12
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-11
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	1e-10
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	2e-12
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	7e-06
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-12
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-11
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-10
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-07
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-06
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	3e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-12
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	2e-08
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	5e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	5e-12
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	3e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	4e-11
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-05
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	9e-12
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-11
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	4e-10
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-09
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	7e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	9e-12
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-11
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-10
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	4e-09
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-08
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-07
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	6e-07
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	5e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	9e-11
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	1e-07
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-11
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-10
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	3e-09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-08
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-08
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	2e-11
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	1e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	6e-11
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-10
3hra_A	201	Ankyrin repeat family protein; structural protein;	7e-09
3hra_A	201	Ankyrin repeat family protein; structural protein;	4e-04
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-10
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	3e-05
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-10
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-09
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	6e-08
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-07
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-09
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-08
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	3e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-06
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	7e-06
2rfa_A	232	Transient receptor potential cation channel subfa	3e-10
2rfa_A	232	Transient receptor potential cation channel subfa	3e-10
2rfa_A	232	Transient receptor potential cation channel subfa	9e-09
2rfa_A	232	Transient receptor potential cation channel subfa	1e-08
2rfa_A	232	Transient receptor potential cation channel subfa	1e-08
2rfa_A	232	Transient receptor potential cation channel subfa	2e-06
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	4e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-10
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-09
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-06
2etb_A	256	Transient receptor potential cation channel subfam	1e-09
2etb_A	256	Transient receptor potential cation channel subfam	6e-08
2etb_A	256	Transient receptor potential cation channel subfam	2e-06
2etb_A	256	Transient receptor potential cation channel subfam	6e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	2e-09
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-07
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	3e-05
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-04
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	3e-09
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	8e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	6e-09
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-06
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	2e-04
3jxi_A	260	Vanilloid receptor-related osmotically activated p	8e-09
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-07
3jxi_A	260	Vanilloid receptor-related osmotically activated p	7e-06
3jxi_A	260	Vanilloid receptor-related osmotically activated p	4e-05
2pnn_A	273	Transient receptor potential cation channel subfa	9e-08
2pnn_A	273	Transient receptor potential cation channel subfa	1e-06
2pnn_A	273	Transient receptor potential cation channel subfa	3e-06
2pnn_A	273	Transient receptor potential cation channel subfa	4e-06
2pnn_A	273	Transient receptor potential cation channel subfa	1e-04
2pnn_A	273	Transient receptor potential cation channel subfa	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 74.8 bits (185), Expect = 3e-17
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
           N       + LH AA  G  + V LLL  GA+    N+ G  P+D     S   +L L E
Sbjct: 70  NTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPE 129

Query: 247 KDA 249
           K+ 
Sbjct: 130 KNE 132

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 62.8 bits (154), Expect = 7e-13
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N KD+   T LH A  +G  + V LLL++ A V        +P+  A  N   D++KLL
Sbjct: 37  NVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLL 95

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 59.0 bits (144), Expect = 2e-11
 Identities = 18/56 (32%), Positives = 29/56 (51%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N +  T LH A+  G    V  LL+NG+   +++  G TP+  A  +    V++LL
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELL 62

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 40.1 bits (95), Expect = 1e-04
 Identities = 6/34 (17%), Positives = 11/34 (32%), Gaps = 4/34 (11%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVT 220
           N  +      + Y      K  + LL E   + +
Sbjct: 103 NAVNIFGLRPVDYTDDESMKS-LLLLPEKNESSS 135

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 70.7 bits (174), Expect = 5e-15
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N ++    TALH AA  G  + V LLL  GA   L+N++ K   D+A   +   +LK  
Sbjct: 134 NQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKK 192

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 60.0 bits (146), Expect = 4e-11
 Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            ++       LH AA  G    +   L+N   V   +  G T +  A      D++++L
Sbjct: 67  AEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 56.5 bits (137), Expect = 7e-10
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLL-ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D    TAL++A   G K+ V +L  +    +  QN  G T +  A      D+++LL
Sbjct: 100 NGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLL 159

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 54.6 bits (132), Expect = 3e-09
 Identities = 8/54 (14%), Positives = 15/54 (27%), Gaps = 3/54 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHD 240
           + ++     A   A        +       A  TL N +     + + L   H 
Sbjct: 167 DLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDYLDDEDSDLEHHHH 220

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 46.5 bits (111), Expect = 2e-06
 Identities = 3/50 (6%), Positives = 8/50 (16%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
              +  A           L      +        T         +  ++ 
Sbjct: 13  QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIP 62

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 69.1 bits (170), Expect = 1e-14
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 190 NDKDN----TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + +D     TALH AAGY R E V  L+E GA + +++  G T +++A+   +       
Sbjct: 103 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 162

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNM-DGKTPIDVAKLNSQHDVLKLL 245
           +  D    TAL + AG G  +CV LL E GA +  ++M  G T + +A    + +V++ L
Sbjct: 70  DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 129

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 59.0 bits (144), Expect = 4e-11
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
             +  T    AA    ++ ++ LLE    V   + +G+T +           ++LL
Sbjct: 41  VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLL 95

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 49.0 bits (118), Expect = 2e-07
 Identities = 9/61 (14%), Positives = 14/61 (22%), Gaps = 3/61 (4%)

Query: 189 WNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 248
              +           G            A V     + +TP   A   +    L  L +D
Sbjct: 10  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLED 66

Query: 249 A 249
            
Sbjct: 67  R 67

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 44.8 bits (107), Expect = 5e-06
 Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 20/64 (31%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
             +D    TAL  A    +       ++ G                 ++  +  V+ +LE
Sbjct: 137 EVEDERGLTALELAREILKTTPKGNPMQFG----------------RRIGLE-KVINVLE 179

Query: 247 KDAF 250
              F
Sbjct: 180 GQVF 183

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 69.0 bits (170), Expect = 1e-14
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  +      LHYA  +G+ +    L+ NGA V++ N  G+ P+D AK   +  + +  
Sbjct: 99  NAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERA 157

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 65.1 bits (160), Expect = 3e-13
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D+   + LH+A   GR   V +L+  GA + + N    TP+ +A  +   D+++ L
Sbjct: 33  NQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKL 91

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 61.3 bits (150), Expect = 6e-12
 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  +    T LH AA +G ++ V  LL+  A +   N  G  P+  A    Q  V + L
Sbjct: 66  NVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDL 124

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 51.7 bits (125), Expect = 2e-08
 Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 2/57 (3%)

Query: 191 DKD-NTALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 245
             +    +      G    V L L+N    +   +  G +P+  A    +  V+++L
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEML 58

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 3/33 (9%), Positives = 9/33 (27%), Gaps = 3/33 (9%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAV 219
           +  +      +  A    R+       + G  +
Sbjct: 132 SICNKYGEMPVDKAKAPLRELLRERAEKMGQNL 164

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 69.4 bits (171), Expect = 2e-14
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +  +    + LH AA   R +CV L L   + VTL+N +G+TP+  A LNSQ      +
Sbjct: 171 HAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQM 229

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 62.8 bits (154), Expect = 4e-12
 Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N +D+   T + +A  Y   + V LLL  G+ + +++ +    +  A  +   D+ ++L
Sbjct: 105 NCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEIL 163

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 62.0 bits (152), Expect = 7e-12
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +       T L  AA     E V  L++ GA V  ++ +G T + +A     ++V++ L
Sbjct: 38  DTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYL 96

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
             +     + LH AA  G  +   +L++ GA +   + D +TP+  A  N+  + +K L
Sbjct: 5   KMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYL 63

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 61.3 bits (150), Expect = 1e-11
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N +DN     LH+AA  G  +   +LL     +   N+ G +P+ +A   +++D + L 
Sbjct: 138 NIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLF 196

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 59.3 bits (145), Expect = 7e-11
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + KD    T LH AA  G  E V  LL NG   V  Q+  G TP+  A      D++KLL
Sbjct: 71  DPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 40.9 bits (97), Expect = 1e-04
 Identities = 4/31 (12%), Positives = 9/31 (29%), Gaps = 3/31 (9%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGA 217
             K+    T L  A+   +      + +   
Sbjct: 204 TLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 69.2 bits (170), Expect = 2e-14
 Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 4/60 (6%)

Query: 190 NDKDN----TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + +D     TALH AAGY R E V  L+E GA + +++  G T +++A+   +       
Sbjct: 104 DHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNP 163

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 59.2 bits (144), Expect = 1e-10
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNM-DGKTPIDVAKLNSQHDVLKLL 245
           +  D    TAL + AG G  +CV LL E GA +  ++M  G T + +A    + +V++ L
Sbjct: 71  DAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEAL 130

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 58.4 bits (142), Expect = 2e-10
 Identities = 11/56 (19%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
             +  T    AA    ++ ++ LLE    V   + +G+T +           ++LL
Sbjct: 42  VSEYETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLL 96

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 9/62 (14%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
             +D    TAL  A    +       ++ G  +    ++    +   ++    +V +++E
Sbjct: 138 EVEDERGLTALELAREILKTTPKGNPMQFGRRI---GLEKVINVLEGQVFEYAEVDEIVE 194

Query: 247 KD 248
           K 
Sbjct: 195 KR 196

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 49.5 bits (119), Expect = 2e-07
 Identities = 9/61 (14%), Positives = 14/61 (22%), Gaps = 3/61 (4%)

Query: 189 WNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD 248
              +           G            A V     + +TP   A   +    L  L +D
Sbjct: 11  TAGEGAMEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQLLED 67

Query: 249 A 249
            
Sbjct: 68  R 68

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 42.2 bits (100), Expect = 6e-05
 Identities = 5/47 (10%), Positives = 14/47 (29%), Gaps = 5/47 (10%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 233
            +K        +        +C  +   + A    +  D +  ++ A
Sbjct: 193 VEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAK--DYEDGLEYA 237

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 69.0 bits (170), Expect = 3e-14
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + ++N   T L  AA  G  E   +LL++ A   + +   + P D+A+    HD+++LL
Sbjct: 184 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 242

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 63.3 bits (155), Expect = 4e-12
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D+   +ALH+AA     +   +LL+NGA   +QN   +TP+ +A     ++  K+L
Sbjct: 151 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 209

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 62.1 bits (152), Expect = 1e-11
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D    TALH AA Y R +    LLE  A   +Q+  G+TP+  A       V ++L
Sbjct: 51  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 109

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 59.4 bits (145), Expect = 7e-11
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + + +   T L  AA    +  +  L+ + A V   +  GK+ +  A   +  D   +L
Sbjct: 118 DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 176

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N +DN   T LH A     +    +L+ N A  +  +  DG TP+ +A   +   +L+ L
Sbjct: 84  NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 143

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 49.4 bits (119), Expect = 2e-07
 Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 17/73 (23%)

Query: 190 NDKDN---TALHYAAGYG-------------RKECVALLLENGAAVT-LQNMDGKTPIDV 232
           N +     T L  A+  G                 ++  +  GA++    +  G+T + +
Sbjct: 4   NVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHL 63

Query: 233 AKLNSQHDVLKLL 245
           A   S+ D  K L
Sbjct: 64  AARYSRSDAAKRL 76

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 5/37 (13%), Positives = 9/37 (24%), Gaps = 3/37 (8%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQN 223
           +  D+        A      + V LL          +
Sbjct: 217 DITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHHH 253

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 66.3 bits (163), Expect = 3e-14
 Identities = 18/57 (31%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
           N  D    T L  A   G   CV LLL  GA  T++  DG T  +     +   +L+
Sbjct: 67  NAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 60.1 bits (147), Expect = 5e-12
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LL 245
           N         LHYAA  G+ E +  LL  GA +   +    TP+  A        +K LL
Sbjct: 34  NRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL 93

Query: 246 EKDA 249
            K A
Sbjct: 94  SKGA 97

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 59.7 bits (146), Expect = 1e-11
 Identities = 11/52 (21%), Positives = 20/52 (38%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +    +A   G  + V   +  G  V      G+ P+  A    Q ++L+ L
Sbjct: 8   DKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFL 59

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 67.0 bits (165), Expect = 3e-14
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 3/60 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
           N KD    TALH+A  +  +E V LL++ GA V  Q+   KT  D++  N   D+ ++L+
Sbjct: 94  NAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQ 153

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 62.0 bits (152), Expect = 2e-12
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + +     T LH AA  G    V +LL++GA V  ++M   T +  A  ++  +V++LL
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELL 119

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 58.6 bits (143), Expect = 4e-11
 Identities = 13/56 (23%), Positives = 26/56 (46%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +    + LH AA YG      +LL  G +   +    +TP+ +A      +++++L
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVL 86

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score = 53.5 bits (130), Expect = 3e-09
 Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
              L  AA  G+ + V +L+ NGA  T  +  G +P+ +A         ++L
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVL 53

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 67.4 bits (166), Expect = 4e-14
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N+ D    T L YA      +CV +LLE+GA  T++   G   +D+A       V +++
Sbjct: 96  NEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVI 154

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.8 bits (154), Expect = 2e-12
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LL 245
                   +AL  A   G  + V +LL+ G  V   + +G TP+  A   +    +K LL
Sbjct: 63  QLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL 122

Query: 246 EKDA 249
           E  A
Sbjct: 123 ESGA 126

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 62.4 bits (153), Expect = 2e-12
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D    T L +AA +G+   V  LL+NGA   L     ++ + +A      D++K+L
Sbjct: 30  NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKML 88

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 59.3 bits (145), Expect = 3e-11
 Identities = 12/52 (23%), Positives = 24/52 (46%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + ++H  A  G    +A  +E    +   + +G TP+  A  + Q  V++ L
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFL 55

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 44.7 bits (107), Expect = 4e-06
 Identities = 2/39 (5%), Positives = 12/39 (30%), Gaps = 3/39 (7%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMD 225
             + +    ++  A   G +    ++  +   +     +
Sbjct: 129 TIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIKE 167

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 68.2 bits (168), Expect = 4e-14
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + ++N   T L  AA  G  E   +LL++ A   + +   + P D+A+    HD+++LL
Sbjct: 152 DMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLL 210

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 62.8 bits (154), Expect = 4e-12
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D+   +ALH+AA     +   +LL+NGA   +QN   +TP+ +A     ++  K+L
Sbjct: 119 NAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVL 177

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 61.3 bits (150), Expect = 1e-11
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D    TALH AA Y R +    LLE  A   +Q+  G+TP+  A       V ++L
Sbjct: 19  NQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQIL 77

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 60.1 bits (147), Expect = 3e-11
 Identities = 12/59 (20%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + + +   T L  AA    +  +  L+ + A V   +  GK+ +  A   +  D   +L
Sbjct: 86  DARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVL 144

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 59.3 bits (145), Expect = 7e-11
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N +DN   T LH A     +    +L+ N A  +  +  DG TP+ +A   +   +L+ L
Sbjct: 52  NIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDL 111

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score = 45.5 bits (109), Expect = 3e-06
 Identities = 6/31 (19%), Positives = 9/31 (29%), Gaps = 3/31 (9%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGA 217
           +  D+        A      + V LL E   
Sbjct: 185 DITDHMDRLPRDIAQERMHHDIVRLLDEYNL 215

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 69.4 bits (171), Expect = 5e-14
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D    T LH AA   R E  +LLL +GA  TL N  GK+ +D+A      + L   
Sbjct: 118 NAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYE 176

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 64.8 bits (159), Expect = 2e-12
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +  D    T LH AAGY R   V LLL++GA V  ++  G  P+  A     ++V +LL
Sbjct: 52  HASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELL 110

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.5 bits (153), Expect = 1e-11
 Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
           N  D+   TALH AA  G  +   LLL  G+  ++ ++ G T   +        V ++L 
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQMGNEA----VQQILS 329

Query: 247 KDA 249
           +  
Sbjct: 330 EST 332

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 62.1 bits (152), Expect = 2e-11
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N+K+    T LH AA     + + +L ++GA +   +  G+T +  A L       +LL
Sbjct: 241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLL 299

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 61.7 bits (151), Expect = 2e-11
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + KD      LH A  YG  E   LLL++GA V   ++   TP+  A   ++ +V  LL
Sbjct: 85  HAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLL 143

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 56.7 bits (138), Expect = 1e-09
 Identities = 22/59 (37%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 190 NDKDNTALHYAAGYG---RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
                TALH A       RK+   LLL  GA V  +N D  TP+ VA   + +DV+++L
Sbjct: 208 PQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVL 266

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 51.7 bits (125), Expect = 5e-08
 Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 190 NDKDNTALHYAAGYG-RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            +     L  AA  G  ++ +ALL          +    TP+ +A   ++  +++LL
Sbjct: 21  GEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLL 77

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 46.7 bits (112), Expect = 3e-06
 Identities = 8/63 (12%), Positives = 17/63 (26%), Gaps = 14/63 (22%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
              +    +A+  A     +E +                G + +  A+      V K L 
Sbjct: 151 TLVNCHGKSAVDMAPTPELRERLTYEF-----------KGHSLLQAAREADLAKVKKTLA 199

Query: 247 KDA 249
            + 
Sbjct: 200 LEI 202

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 39.8 bits (94), Expect = 5e-04
 Identities = 6/42 (14%), Positives = 12/42 (28%), Gaps = 8/42 (19%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKT 228
           +       TA          E V  +L     +   ++D + 
Sbjct: 307 SIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDVDYRL 343

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 67.1 bits (165), Expect = 5e-14
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LL 245
           N  D    T L YA      +CV  LL  GA +T +   G TP+D+A       V + + 
Sbjct: 96  NIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE 155

Query: 246 EKDA 249
               
Sbjct: 156 NHIL 159

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 62.4 bits (153), Expect = 2e-12
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LL 245
           N  D    T L +A+ +G  E V  LLE GA   +   + ++ + +A      D++  LL
Sbjct: 30  NKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL 89

Query: 246 EKDA 249
           E+D 
Sbjct: 90  ERDV 93

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 61.3 bits (150), Expect = 6e-12
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LL 245
           +       +AL  A+  G  + V LLLE    + + + +G TP+  A   +    ++ LL
Sbjct: 63  HILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL 122

Query: 246 EKDA 249
            + A
Sbjct: 123 ARGA 126

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 56.7 bits (138), Expect = 3e-10
 Identities = 12/54 (22%), Positives = 23/54 (42%), Gaps = 1/54 (1%)

Query: 193 DNTALHYAAGYGRKECVALLLENGA-AVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           D+ ++H  A  G  + +   L  G   V   +  G TP+  A    + + ++ L
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFL 55

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 56.3 bits (137), Expect = 4e-10
 Identities = 5/43 (11%), Positives = 15/43 (34%), Gaps = 3/43 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP 229
             + +   T +  A   G ++   ++  +   +   N+    P
Sbjct: 129 TTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP 171

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 68.2 bits (168), Expect = 6e-14
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N +     +ALH A+G G    V  L+ +GA  +L+N    TP+ VA+     D+L+  
Sbjct: 177 NAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGK 235

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 62.1 bits (152), Expect = 8e-12
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +  +N   T LH A        V LL+  GA+    +  G+T   +A  +     L+ L
Sbjct: 40  DIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRAL 98

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 59.4 bits (145), Expect = 8e-11
 Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 190 NDKDN----TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +  D     + L +A        V LLL++GA V  Q   G + +  A       +++ L
Sbjct: 143 DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTL 202

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 59.0 bits (144), Expect = 9e-11
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTL----QNMDGKTPIDVAKLNSQHDVL 242
              D    TA H A  +    C+  LL++ A  TL    +N DG T + VA      + +
Sbjct: 73  MALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETV 132

Query: 243 KLL 245
           +LL
Sbjct: 133 QLL 135

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 59.0 bits (144), Expect = 1e-10
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNM-DGKTPIDVAKLNSQHDVLKLL 245
             ++    TALH A     +E V LLLE GA +   ++  G++P+  A  N+   +++LL
Sbjct: 110 EARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLL 169

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 56.3 bits (137), Expect = 9e-10
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 7/63 (11%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLE----NGAAVTLQNMDGKTPIDVAKLNSQHDVL 242
              D    T LH A   G    V  L+      G  + + N   +TP+ +A + +   V+
Sbjct: 3   TRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVV 62

Query: 243 KLL 245
           +LL
Sbjct: 63  RLL 65

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score = 44.0 bits (105), Expect = 2e-05
 Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 3/31 (9%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGA 217
           + K+    T L  A      + +       A
Sbjct: 210 SLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 68.7 bits (169), Expect = 1e-13
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
           N K     + LH AA  G  + V LLL+NGA+    + DG TP+ +AK      V  +L+
Sbjct: 338 NAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK 397

Query: 247 K 247
            
Sbjct: 398 V 398

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 64.4 bits (158), Expect = 3e-12
 Identities = 22/56 (39%), Positives = 29/56 (51%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
             K  T LH AA YG+     LLLE  A       +G TP+ VA  ++  D++KLL
Sbjct: 143 TKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLL 198

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.3 bits (155), Expect = 8e-12
 Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +       T LH A+ YG  + V  LL++ A V  +   G +P+  A      D++ LL
Sbjct: 305 DATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLL 363

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 63.3 bits (155), Expect = 9e-12
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N K     T LH AA  G    V LLLEN A   L    G TP+ +A      + +  L
Sbjct: 74  NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 132

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.9 bits (154), Expect = 1e-11
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LL 245
           N       T LH AA  G  E V  LLE  A+       G TP+ VA    +  V + LL
Sbjct: 107 NLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL 166

Query: 246 EKDA 249
           E+DA
Sbjct: 167 ERDA 170

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 62.5 bits (153), Expect = 2e-11
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N       T LH A  +   + V LLL  G +      +G TP+ +A   +Q +V + L
Sbjct: 173 NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 231

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 3e-11
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
                   T LH A+  G    V  LL+ GA+  + N+  +TP+ +A      +V K L
Sbjct: 8   GGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 66

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 4e-11
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  +    T LH AA  G  E    LL+N A V  +  D +TP+  A      +++KLL
Sbjct: 41  NVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 99

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.4 bits (150), Expect = 4e-11
 Identities = 20/56 (35%), Positives = 25/56 (44%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + +  T LH AA  G  E VALLL   A   L N  G TP+ +        V  +L
Sbjct: 242 SVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVL 297

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.0 bits (149), Expect = 5e-11
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LLEKD 248
                T LH AA   + E    LL+ G +   +++ G TP+ +A      +++  LL K 
Sbjct: 209 AWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQ 268

Query: 249 A 249
           A
Sbjct: 269 A 269

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 61.0 bits (149), Expect = 6e-11
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LL 245
           N  +    T LH  A  G      +L+++G  V      G TP+ VA       ++K LL
Sbjct: 272 NLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL 331

Query: 246 EKDA 249
           +  A
Sbjct: 332 QHQA 335

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 49.4 bits (119), Expect = 4e-07
 Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 6/52 (11%)

Query: 190 NDKDN---TALHYAAGYGRKECVALL---LENGAAVTLQNMDGKTPIDVAKL 235
           N+  +   T L  A   G      +L    +  + V + +    +  +    
Sbjct: 371 NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETVDE 422

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.7 bits (156), Expect = 2e-13
 Identities = 19/56 (33%), Positives = 30/56 (53%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
                  L  AA  G+ + V +L+ NGA V  ++ +G TP+ +A  N   +V+KLL
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLL 76

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 63.0 bits (154), Expect = 4e-13
 Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
             KD    T LH AA  G  E V LLLE GA V  Q+  GKT  D++  N   D+ ++L+
Sbjct: 51  AAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEILQ 110

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 42.9 bits (102), Expect = 7e-06
 Identities = 7/46 (15%), Positives = 17/46 (36%), Gaps = 3/46 (6%)

Query: 200 AAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            + +      + L+  G+ +     D    +  A    Q D +++L
Sbjct: 1   GSSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRIL 43

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 65.1 bits (160), Expect = 2e-13
 Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 4/59 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D    T LH AA  G+ E   LLL++GA  T +N DG TP+D+ K     D+  LL
Sbjct: 102 NVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDT-DIQDLL 159

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 63.2 bits (155), Expect = 1e-12
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            D +    T LH+AAGY R   V  LL++GA V  ++  G  P+  A     ++V +LL
Sbjct: 36  RDIEGRQSTPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELL 94

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 58.6 bits (143), Expect = 5e-11
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + KD      LH A  YG  E   LL+++GA V + ++   TP+  A    ++++ KLL
Sbjct: 69  HAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLL 127

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 54.3 bits (132), Expect = 2e-09
 Identities = 13/57 (22%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N + +  L  AA  G  E V  L    +           TP+  A   ++  V++ L
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYL 61

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 4/31 (12%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGA 217
             K+    T L      G  +   LL  + A
Sbjct: 135 TKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 64.3 bits (158), Expect = 2e-13
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D    T LH AA  G  E   +LL++GA V  Q+  GKT  D++  N   D+ ++L
Sbjct: 74  NAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 60.5 bits (148), Expect = 5e-12
 Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N KD    T L+ A  +G  E V +LL+NGA V   +  G TP+ +A      ++ ++L
Sbjct: 41  NAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVL 99

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 57.8 bits (141), Expect = 5e-11
 Identities = 15/52 (28%), Positives = 29/52 (55%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
              L  AA  G+ + V +L+ NGA V  ++  G TP+ +A  +   +++++L
Sbjct: 15  GKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVL 66

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 38.9 bits (92), Expect = 3e-04
 Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 3/28 (10%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLE 214
           N +D    TA   + G G ++   +L +
Sbjct: 107 NAQDKFGKTAFDISIGNGNEDLAEILQK 134

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 66.9 bits (163), Expect = 2e-13
 Identities = 22/65 (33%), Positives = 33/65 (50%)

Query: 183 SAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL 242
           S  +     K +TALHY       EC+ LLL   A++ + N  G+TP+D+AK        
Sbjct: 195 SGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCE 254

Query: 243 KLLEK 247
           +LL +
Sbjct: 255 ELLTQ 259

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 186 MKYWNDKDNTALHYAAGYGRKECVA---LLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL 242
           +   ++ D TALH A     +  +     L++N   +  Q   G T +    L    + L
Sbjct: 162 LANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECL 221

Query: 243 KLL 245
           KLL
Sbjct: 222 KLL 224

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 66.3 bits (163), Expect = 3e-13
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 4/60 (6%)

Query: 190 NDKDN----TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D     TALH+A   G    ++LLLE GA V  QN+ G++ +D+AK      ++  L
Sbjct: 170 NLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHL 229

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 62.8 bits (154), Expect = 4e-12
 Identities = 15/56 (26%), Positives = 27/56 (48%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            D ++T LH+A   G    V  L++ GA  +L + +G + I +A       ++  L
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYL 128

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
              D+     +  A  YG  E    L+E G  V   + +  T +  A +N++ D++K  
Sbjct: 3   THIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 58.6 bits (143), Expect = 1e-10
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS-QHDVLKLL 245
           +  D    + +H AA +G    VA L+  G  V + + +G TP+  A   +   D  +LL
Sbjct: 103 SLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLL 162

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 55.9 bits (136), Expect = 1e-09
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMD-GKTPIDVAKLNSQHDVLKLL 245
              D    T LH+AA   R + V   +  GA V     D   TP+  A       ++  L
Sbjct: 36  RQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQL 95

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 54.0 bits (131), Expect = 5e-09
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 190 NDKDN---TALHYAAGYG-RKECVALLLENGAAVTLQ-NMDGKTPIDVAKLNSQHDVLKL 244
           +  D    T L +AA      +   LLL    +V L       T +  A L     V+ L
Sbjct: 136 DMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISL 195

Query: 245 L 245
           L
Sbjct: 196 L 196

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score = 43.2 bits (103), Expect = 2e-05
 Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 3/37 (8%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQN 223
           + ++    +AL  A        +  L E   A    N
Sbjct: 204 DAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 63.6 bits (156), Expect = 4e-13
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 190 NDKDN----TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-L 244
           N  D       +H AA  G  + + +L   GA + + +  G+ P+D+A+     D+ + L
Sbjct: 71  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYL 130

Query: 245 LEKDA 249
                
Sbjct: 131 HAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 60.5 bits (148), Expect = 5e-12
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +         L  AA  G+ E V  LLE GA     N  G+ PI V  + S   V +LL
Sbjct: 6   HMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGS-AQVAELL 63

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 52.8 bits (128), Expect = 4e-09
 Identities = 13/57 (22%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKT-PIDVAKLNSQHDVLKLL 245
           N      +      G  +   LLL +GA     +    T P+  A      D L +L
Sbjct: 42  NRFGRRPIQVMM-MGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVL 97

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 66.4 bits (163), Expect = 4e-13
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  DN     LH AA  G  +    L+  GA V   N +G TP+D+A+  +  ++L+  
Sbjct: 100 NQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNE 158

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 66.0 bits (162), Expect = 7e-13
 Identities = 21/61 (34%), Positives = 32/61 (52%), Gaps = 3/61 (4%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
           N KD    T LH AA +G++E   +L+EN   +   N  G+T  DVA  +    + +L +
Sbjct: 226 NIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEELQK 285

Query: 247 K 247
           K
Sbjct: 286 K 286

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 63.3 bits (155), Expect = 5e-12
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
                   TALH AA  G  E + LL++    V +++ DG TP+  A    + +  ++L
Sbjct: 193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 59.8 bits (146), Expect = 7e-11
 Identities = 18/56 (32%), Positives = 25/56 (44%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
              D      A   G  E V  LLE GA +   N+DG T +  A ++   D++K L
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFL 92

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  +    TALH A      + V  L+ENGA +   + +G  P+  A      D+ + L
Sbjct: 67  NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYL 125

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.9 bits (115), Expect = 9e-07
 Identities = 10/60 (16%), Positives = 20/60 (33%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
           + K           G +  +   +       ++  DG   +         +VL+LLE+ A
Sbjct: 5   DAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDTEEVLRLLERGA 64

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 1/57 (1%)

Query: 190 NDKD-NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
              D   A         ++    L             G T + VA      +VLKLL
Sbjct: 162 QGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 44.4 bits (106), Expect = 1e-05
 Identities = 7/59 (11%), Positives = 15/59 (25%), Gaps = 9/59 (15%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
              ++   T L  A     +E +   +           D +      +     D  + L
Sbjct: 133 GAVNSEGDTPLDIAEEEAMEELLQNEVNRQGV------DIEAARKEEERIMLRDARQWL 185

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 62.8 bits (154), Expect = 5e-13
 Identities = 26/58 (44%), Positives = 33/58 (56%), Gaps = 1/58 (1%)

Query: 189 WNDKD-NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           W  KD NT LH AA  G  E V  LL  GA V  ++ DG TP+ +A  N   +++KLL
Sbjct: 4   WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLL 61

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 61.2 bits (150), Expect = 2e-12
 Identities = 26/59 (44%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N +     T LH AA  G  E V LLL  GA V  ++ DG TP  +AK N  H+++KLL
Sbjct: 36  NARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLL 94

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 53.5 bits (130), Expect = 1e-09
 Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 3/43 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP 229
           N +     T  H A   G  E V LL   GA V  ++      
Sbjct: 69  NARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHH 111

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + +D    T +  AA  GR E V  L++ GA+V   +    T   +A+ N+ H+++ + 
Sbjct: 307 DKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIF 365

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.9 bits (151), Expect = 2e-11
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D    T L  A    R+  VA L++ GA  T+ N   ++ +  A  N    ++  +
Sbjct: 160 NAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYM 218

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.6 bits (127), Expect = 2e-08
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLEN---GAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
              +    +ALH AA       +  +L +      +   + +G T + +   N   D + 
Sbjct: 193 TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVA 252

Query: 244 ----LLEKDA 249
               L+EK A
Sbjct: 253 SAKLLVEKGA 262

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 52.6 bits (127), Expect = 3e-08
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLL-ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + +     TALHYAA       V  L+ E G+    Q+ DGKTPI +A    + +V+  L
Sbjct: 273 DSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 332

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 51.9 bits (125), Expect = 6e-08
 Identities = 7/79 (8%), Positives = 13/79 (16%)

Query: 171 KPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 230
             +L+    G                     G G          N    T    +    +
Sbjct: 39  HSLLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKL 98

Query: 231 DVAKLNSQHDVLKLLEKDA 249
                 S      +  +  
Sbjct: 99  HTEAAGSYAITEPITRESV 117

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 190 NDKDN--TALHYAAGYGRKECVALLL--------ENGAAVTLQNMDGKTPIDVAKLNSQH 239
            D  +  T LH+ A     E    L+          GA V   + D  TP+ +A L  + 
Sbjct: 120 IDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRR 179

Query: 240 DVLKLL 245
            ++  L
Sbjct: 180 RLVAYL 185

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 48.8 bits (117), Expect = 5e-07
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 14/70 (20%)

Query: 190 NDKDN---TALHYAAGYGRKECVA---LLLENGA--------AVTLQNMDGKTPIDVAKL 235
            + D    TAL   A    ++ VA   LL+E GA            +   G+T +  A  
Sbjct: 229 EELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ 288

Query: 236 NSQHDVLKLL 245
            S   ++K L
Sbjct: 289 VSNMPIVKYL 298

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 8/59 (13%), Positives = 16/59 (27%), Gaps = 5/59 (8%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            + +      LH  A  G       +      +       +T +     NS  +  + L
Sbjct: 88  TEPEPESPIKLHTEA-AGSYAITEPITRESVNII-DPRHNRTVLHWIASNSSAEKSEDL 144

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 5/31 (16%), Positives = 6/31 (19%), Gaps = 3/31 (9%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGA 217
              D    TA   A        V +      
Sbjct: 340 EAVDATDHTARQLAQANNHHNIVDIFDRCRP 370

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 63.9 bits (157), Expect = 7e-13
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 4/63 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL- 245
           N  D    T LH AA +G  E V +LL+NGA V  Q+  GKT  D++  N   D+ ++L 
Sbjct: 107 NANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQ 166

Query: 246 EKD 248
           + +
Sbjct: 167 KLN 169

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 60.8 bits (149), Expect = 9e-12
 Identities = 21/59 (35%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D+   T L  AA +G  E V +LL+NGA V   +M+G TP+ +A +    +++++L
Sbjct: 74  NAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVL 132

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 60.1 bits (147), Expect = 2e-11
 Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N +D    T LH AA  G  E V +LL+NGA V   +  G TP+ +A L    +++++L
Sbjct: 41  NAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVL 99

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 56.6 bits (138), Expect = 3e-10
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 1/57 (1%)

Query: 190 NDKD-NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +  D    L  AA  GR + V +L+ NGA V  ++  G TP+ +A  N   +++++L
Sbjct: 10  HGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVL 66

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 64.3 bits (158), Expect = 8e-13
 Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           ND++    T L  A+ YGR E V  LLE GA ++ +++ G T    A++  + +V+K+ 
Sbjct: 128 NDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIF 186

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 60.5 bits (148), Expect = 2e-11
 Identities = 14/59 (23%), Positives = 29/59 (49%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N +D+   T L  A   G +  +  L+EN   +  ++++G T +  A  N++  + + L
Sbjct: 29  NYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 59.7 bits (146), Expect = 3e-11
 Identities = 21/59 (35%), Positives = 34/59 (57%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N KD    T L ++  +G  E    LLE+GA V  +N++G+TP+ VA    + +++K L
Sbjct: 95  NTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKL 153

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 59.7 bits (146), Expect = 3e-11
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            DKD    TAL +A    R      LL  G+ V  ++  GKTP+  + +    ++   L
Sbjct: 62  EDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFL 120

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 42.8 bits (102), Expect = 2e-05
 Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 3/32 (9%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAA 218
           + +D    TA   A  +GR+E + +  E   A
Sbjct: 161 SARDLTGLTAEASARIFGRQEVIKIFTEVRRA 192

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.1 bits (95), Expect = 2e-04
 Identities = 7/59 (11%), Positives = 17/59 (28%), Gaps = 9/59 (15%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +  D                + +  L         ++   +TP+ VA +    + +  L
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRN------YRDSYNRTPLMVACMLGMENAIDKL 54

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 65.6 bits (161), Expect = 8e-13
 Identities = 15/62 (24%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 191 DKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
           ++     + LH       +E   LL++ GA    +N +GK P+++    S    L L  +
Sbjct: 217 NQGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLERE 276

Query: 248 DA 249
            A
Sbjct: 277 GA 278

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 62.9 bits (154), Expect = 6e-12
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N       + LH A   G   CV +LL++GA V     D  TP+  A ++   D + LL
Sbjct: 86  NIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLL 144

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 61.4 bits (150), Expect = 2e-11
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LLEKD 248
                + +H AA  G  ECV  L+  G  +  +     TP+ +A  N Q   +K LLE  
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESG 213

Query: 249 A 249
           A
Sbjct: 214 A 214

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 61.0 bits (149), Expect = 3e-11
 Identities = 14/57 (24%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 190 NDKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +   + + +H AA +G +  +  L+  G AV +   D  +P+  A L      +K+L
Sbjct: 55  DAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKIL 111

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 60.2 bits (147), Expect = 6e-11
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N       T L  A   G  +CV LLL++GA+V  ++ D  +PI  A      + +  L
Sbjct: 119 NGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSL 176

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 59.8 bits (146), Expect = 8e-11
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 4/59 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + K +   T L+ A    ++ CV  LLE+GA V  Q     +P+      +  ++  LL
Sbjct: 184 DHKISHLGTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVVRTASEELACLL 241

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 63.2 bits (155), Expect = 9e-13
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
           N +D    + +H AA  G  + + +L+E+GA V + +  G  PI +A       V+  L 
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA 121

Query: 247 KDA 249
            ++
Sbjct: 122 AES 124

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 59.7 bits (146), Expect = 1e-11
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 4/59 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +  +    TAL     +G       LL+ GA+  +Q+  G +P+  A      D LK+L
Sbjct: 30  DALNRFGKTALQVMM-FGSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVL 87

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 59.0 bits (144), Expect = 3e-11
 Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 4/59 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D      +H A   G    V+ L    + +  ++  G TP+++A      D++ +L
Sbjct: 95  NVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDIL 152

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 52.0 bits (126), Expect = 9e-09
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 192 KDNTALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
           +    L  AA  G  + V  LL          N  GKT + V    S    L+LL++ A
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGA 59

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 38.2 bits (90), Expect = 6e-04
 Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 3/28 (10%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLE 214
           + +D    T L  A   G ++ V +L  
Sbjct: 127 HRRDARGLTPLELALQRGAQDLVDILQG 154

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 63.2 bits (155), Expect = 9e-13
 Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N +DN     LH AA  G    V  L+++ A+ V  +N  G T  D+A+L  +++V+ L+
Sbjct: 97  NIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLM 156

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 61.2 bits (150), Expect = 6e-12
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + KD      +H AA  G  + +  LLE  A V +++ +G  P+ +A       V++ L
Sbjct: 64  DLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFL 122

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 61.2 bits (150), Expect = 6e-12
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            +     L  AA  G  E +  LL+N   V  QN  G+T + V KL +  ++ + L
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGN-PEIARRL 56

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 56.6 bits (138), Expect = 3e-10
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N ++    TAL      G  E    LL  GA   L++  G   I  A      D L+ L
Sbjct: 32  NAQNGFGRTALQVMK-LGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTL 89

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 48.5 bits (117), Expect = 2e-07
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 3/32 (9%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAA 218
             +++   TA   A  YGR E V+L+  NGA 
Sbjct: 131 GHRNHKGDTACDLARLYGRNEVVSLMQANGAG 162

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 65.3 bits (160), Expect = 1e-12
 Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 3/61 (4%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
             +     T L  A          LL  +GA       D  +P   +  +S  D     +
Sbjct: 219 TARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGD 278

Query: 247 K 247
           +
Sbjct: 279 E 279

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 63.7 bits (156), Expect = 3e-12
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + +++   TALH AA  G    V  L   GA V +    G T + +A     H    +L
Sbjct: 39  DLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVL 97

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 62.2 bits (152), Expect = 1e-11
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 190 NDKDN----TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  +     T LH A        + LLL+ GA  T +   G+TP+  A L     + +LL
Sbjct: 185 NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLL 244

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 59.9 bits (146), Expect = 8e-11
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 191 DKD-NTALHYAAGYGRKECVALLLENGA---AVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            +D +TALH A  +  +  +  LL   A    + LQN  G+T + +A +  +   ++ L
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKL 64

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMD-GKTPIDVAKLNSQHDVLKLL 245
             ++    T LH A  +   E V LL + GA +       G+TP+ +A       VL+LL
Sbjct: 152 EAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELL 211

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 52.2 bits (126), Expect = 4e-08
 Identities = 11/74 (14%), Positives = 20/74 (27%), Gaps = 17/74 (22%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV-------------- 232
              +    TALH A       C  +LL+   +      D                     
Sbjct: 72  LVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVD 131

Query: 233 AKLNSQHDVLKLLE 246
           ++ N +++     E
Sbjct: 132 SQPNPENEEEPRDE 145

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score = 47.9 bits (115), Expect = 8e-07
 Identities = 11/56 (19%), Positives = 23/56 (41%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +     A   +      E      +    +  +N DG TP+ VA ++   ++++LL
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLL 177

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 60.8 bits (149), Expect = 1e-12
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LL 245
           N KD    T LH AA  G  E V LLLE GA V  ++ +G+TP+ +A  N   +V+K LL
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 88

Query: 246 EKDAF 250
           E  A+
Sbjct: 89  EAGAY 93

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 56.6 bits (138), Expect = 6e-11
 Identities = 24/52 (46%), Positives = 32/52 (61%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            T LH AA  G  E V LLLE GA V  ++ +G+TP+ +A  N   +V+KLL
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 62.0 bits (152), Expect = 1e-12
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 4/65 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LL 245
           N KD    T LH AA  G  E V LLLE GA V  ++ +G+TP+ +A  N   +V+K LL
Sbjct: 62  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121

Query: 246 EKDAF 250
           E  A+
Sbjct: 122 EAGAY 126

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 59.7 bits (146), Expect = 1e-11
 Identities = 27/59 (45%), Positives = 35/59 (59%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N KD    T LH AA  G  E V LLLE GA V  ++ +G+TP+ +A  N   +V+KLL
Sbjct: 29  NAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 87

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score = 56.6 bits (138), Expect = 1e-10
 Identities = 24/52 (46%), Positives = 32/52 (61%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            T LH AA  G  E V LLLE GA V  ++ +G+TP+ +A  N   +V+KLL
Sbjct: 3   RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLL 54

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 65.0 bits (158), Expect = 2e-12
 Identities = 23/54 (42%), Positives = 34/54 (62%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
           NTALHYAA Y + +C+ LLL+  A V   N  G+T +D+A+     +  +LLE+
Sbjct: 227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQ 280

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 45.4 bits (107), Expect = 7e-06
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 190 NDKDNTALHYAAGYGRKEC---VALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
              +   LH A     +     V  +++NG  +  +  DG T +  A L +Q D LKLL 
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL 246

Query: 247 K 247
           K
Sbjct: 247 K 247

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 64.5 bits (158), Expect = 2e-12
 Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 190 NDKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  +N   LH AA     + V +LL +G   +  +  G T +  A  +     +KL 
Sbjct: 58  NLLENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLF 114

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.8 bits (146), Expect = 8e-11
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDG-KTPIDVAKLNSQHDVLKLL 245
           +  D+   TAL+YA   G  + V L ++    +      G KT    A + +   ++   
Sbjct: 89  SQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYF 148

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP-IDVAKLNSQHDVLKLL 245
                   + +H     G  + + LLL+   +    N     P I +A  N   ++L+ L
Sbjct: 155 TFDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQAL 214

Query: 246 -EKDA 249
            + D 
Sbjct: 215 FKYDI 219

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 5/59 (8%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
              D    +A +YA        V  LL  GA   L   + + P+  A       ++K+L
Sbjct: 25  FKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL--ENEFPLHQAATLEDTKIVKIL 81

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 57.9 bits (141), Expect = 3e-10
 Identities = 9/65 (13%), Positives = 19/65 (29%), Gaps = 6/65 (9%)

Query: 190 NDKDN----TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-L 244
                    T+ ++A        V+  L    +         + I +   N   D++  L
Sbjct: 122 MFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF-DLAILLSCIHITIKNGHVDMMILL 180

Query: 245 LEKDA 249
           L+   
Sbjct: 181 LDYMT 185

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 49.4 bits (119), Expect = 3e-07
 Identities = 7/60 (11%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI----DVAKLNSQHDVLKLLEKDA 249
            +A          E   +++E        +      I     + ++ S++  L+L+  + 
Sbjct: 222 YSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNC 281

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 8/65 (12%), Positives = 19/65 (29%), Gaps = 12/65 (18%)

Query: 190 NDKDN----TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  ++      +  A      E +  L +          +  +      L    ++ K++
Sbjct: 188 NTNNSLLFIPDIKLAIDNKDIEMLQALFKYDI-------NIYSANLENVLLDDAEIAKMI 240

Query: 246 -EKDA 249
            EK  
Sbjct: 241 IEKHV 245

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 61.7 bits (151), Expect = 3e-12
 Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 4/60 (6%)

Query: 190 NDKDN----TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  D       +H AA  G  + + +L   GA + +++  G+ P+D+A+     DV + L
Sbjct: 71  NCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYL 130

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 61.0 bits (149), Expect = 5e-12
 Identities = 21/57 (36%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 190 NDKD-NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + +     L  AA  GR E V  LLE GA     N  G+ PI V  + S   V +LL
Sbjct: 8   SMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGS-ARVAELL 63

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 51.3 bits (124), Expect = 2e-08
 Identities = 5/52 (9%), Positives = 11/52 (21%), Gaps = 5/52 (9%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV 241
           +      +  A   G ++    L             G     +       D+
Sbjct: 108 DAWGRLPVDLAEELGHRDVARYLRAAAG-----GTRGSNHARIDAAEGPSDI 154

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 50.2 bits (121), Expect = 5e-08
 Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKT-PIDVAKLNSQHDVLKLL 245
           N  ++     +      G      LLL +GA     +    T P+  A      D L +L
Sbjct: 39  NAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVL 97

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 61.7 bits (151), Expect = 9e-12
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N   N   T LH A G    E    L+ENGA+V +++   + P+  A       +++LL
Sbjct: 101 NKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELL 159

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 60.5 bits (148), Expect = 2e-11
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N +D    T L +A   G  +   LL+E  GA   L +  G    DVA       V K  
Sbjct: 168 NWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA---LNEQVKKFF 224

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 60.5 bits (148), Expect = 2e-11
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 245
             KD      LH AA  G  + + LL   G + V  Q+  G TP+  A      D   LL
Sbjct: 134 RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 57.1 bits (139), Expect = 4e-10
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNM---DGKTPIDVAKLNSQHDVLK 243
             KD      LH++  +   E  + LL     V L +     G TP  +A      +V+K
Sbjct: 30  LQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVK 89

Query: 244 LL 245
            L
Sbjct: 90  SL 91

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 55.1 bits (134), Expect = 2e-09
 Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 194 NTALHYAAGYGRKECVA-LLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N  LH A        V  LL    + +  ++ DG+ P+  +     H++   L
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFL 55

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 53.6 bits (130), Expect = 7e-09
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLEN--GAAVTLQNMDGKTPIDVAKLNSQHDVLKL 244
           +  D+   T  H A   G  E V  L +      +      G T + +A      +V + 
Sbjct: 66  DYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQF 125

Query: 245 L 245
           L
Sbjct: 126 L 126

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 62.5 bits (153), Expect = 9e-12
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 4/60 (6%)

Query: 190 NDKDN----TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N ++     T LH A    R++ V LLL +GA   L+  +G TP  +A +     +LKL 
Sbjct: 32  NFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLF 91

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 61.7 bits (151), Expect = 1e-11
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
             +     T    AA  G  + + L L  GA V   +  G T    A +  +   LK L
Sbjct: 66  VLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFL 124

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N +     T L  A        V  LLE     +   + DGKT + +A       + +LL
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 55.9 bits (136), Expect = 2e-09
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 13/69 (18%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMD----------GKTPIDVAKLN 236
           N+ D    TA   AA YG+ + +  L + GA V L+             G T +  A   
Sbjct: 99  NECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEK 158

Query: 237 SQHDVLKLL 245
              +VLK+L
Sbjct: 159 GHVEVLKIL 167

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 54.8 bits (133), Expect = 4e-09
 Identities = 20/57 (35%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQ-NMDGKTPIDVAKLNSQHDVLKLL 245
             +DN  L  A      + V  LLE GA V  Q    G TP+  A   S+ D+++LL
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELL 58

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 52.1 bits (126), Expect = 3e-08
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 190 NDKDN---TALHYAAGYGR----KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL 242
           N  DN    AL +A         +    LLL++GA V ++   GKTP+ +A       ++
Sbjct: 176 NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235

Query: 243 KLL 245
           + L
Sbjct: 236 QRL 238

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 50.2 bits (121), Expect = 2e-07
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 6/62 (9%)

Query: 194 NTALHYAAGYGRKECVALLL-ENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-----LLEK 247
            TAL  AA  G  E + +LL E GA V   +  G+  +  A L+S    ++     LL+ 
Sbjct: 149 ATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH 208

Query: 248 DA 249
            A
Sbjct: 209 GA 210

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score = 48.2 bits (116), Expect = 6e-07
 Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 3/38 (7%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNM 224
           ND D+   TAL  A     K+   LL + GA+    ++
Sbjct: 247 NDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 61.8 bits (151), Expect = 1e-11
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N ++N   T LH A    + E    LL  G    L++  G TP+ +A        + +L
Sbjct: 39  NFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVL 97

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 61.4 bits (150), Expect = 1e-11
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 190 NDKDN----TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N ++     TALH A      + V+LLL+ GA V      G +P  +        + + L
Sbjct: 144 NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQL 203

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 59.9 bits (146), Expect = 5e-11
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 4/73 (5%)

Query: 177 IESGGPSAMMKYWNDKDN---TALHYAAGYGRKECVALLLENGAAVTLQ-NMDGKTPIDV 232
            +S     +       +    T LH A+ +G    V LL+  GA V  Q   +G+T + +
Sbjct: 98  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHL 157

Query: 233 AKLNSQHDVLKLL 245
           A      D++ LL
Sbjct: 158 AVDLQNPDLVSLL 170

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 59.1 bits (144), Expect = 9e-11
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGA------AVTLQNMDGKTPIDVAKLNSQHD 240
             +D    T LH A   G    V +L ++         +   N +G T + +A ++    
Sbjct: 72  ELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLG 131

Query: 241 VLKLL 245
           +++LL
Sbjct: 132 IVELL 136

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 52.9 bits (128), Expect = 1e-08
 Identities = 14/60 (23%), Positives = 30/60 (50%), Gaps = 5/60 (8%)

Query: 191 DKD-NTALHYAAGYGRK----ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            +D ++ LH A  +  K    E +  +  + A +  QN   +TP+ +A + +Q ++ + L
Sbjct: 5   TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 49.9 bits (120), Expect = 1e-07
 Identities = 3/55 (5%), Positives = 9/55 (16%), Gaps = 3/55 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV 241
           N       +      G         L +          + +        +   + 
Sbjct: 178 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTEF 232

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 62.6 bits (153), Expect = 1e-11
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 7/72 (9%)

Query: 181 GPSAMMKYW----NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 233
           GP +M  +        D+     +H AA  G+ + V  L+E G + T+QN  G T + +A
Sbjct: 1   GPGSMTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLA 60

Query: 234 KLNSQHDVLKLL 245
                 D  K L
Sbjct: 61  CKFGCVDTAKYL 72

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 61.8 bits (151), Expect = 2e-11
 Identities = 9/59 (15%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +  +    + LH+A     ++     +E G  V +++ +   P+ ++   +   + K L
Sbjct: 205 DYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKEL 263

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 60.7 bits (148), Expect = 5e-11
 Identities = 10/56 (17%), Positives = 17/56 (30%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
                  +  AA   ++E + LL E    V      G       K  +   V ++ 
Sbjct: 287 RVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMK 342

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 60.3 bits (147), Expect = 9e-11
 Identities = 6/48 (12%), Positives = 10/48 (20%), Gaps = 3/48 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK 234
               N                   + L   A V  ++        V+K
Sbjct: 317 VRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSAVSK 364

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 58.3 bits (142), Expect = 3e-10
 Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 190 NDKDN---TALHYAAGYG--RKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 244
           + K     TALH+  G G    E + +L++ GA+ T ++   +TP+  A      + L L
Sbjct: 132 HVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDL 191

Query: 245 L 245
           +
Sbjct: 192 M 192

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 57.2 bits (139), Expect = 9e-10
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 5/59 (8%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
             ++    TALH A  +G  +    L   G   +L    G+ PI +A + ++ D++  L
Sbjct: 47  TIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLW--HGQKPIHLAVMANKTDLVVAL 103

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 55.6 bits (135), Expect = 3e-09
 Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLE-----NGAAVTLQNMDGKTPIDVAKLNSQHDV 241
             KD    T L  A  +  +E + L+++     +   +   N  G + +  A L +  DV
Sbjct: 167 TAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDV 226

Query: 242 LKLL 245
               
Sbjct: 227 AMRF 230

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 53.7 bits (130), Expect = 1e-08
 Identities = 9/62 (14%), Positives = 20/62 (32%), Gaps = 9/62 (14%)

Query: 190 NDKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL--E 246
           +       +H A    + + V  L+E           G+ P  +     + +V ++    
Sbjct: 80  SLWHGQKPIHLAVMANKTDLVVALVEGAKE------RGQMPESLLNECDEREVNEIGSHV 133

Query: 247 KD 248
           K 
Sbjct: 134 KH 135

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 52.9 bits (128), Expect = 2e-08
 Identities = 13/72 (18%), Positives = 22/72 (30%), Gaps = 16/72 (22%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNM-------------DGKTPIDVA 233
           N +DN     L+ +           LL+      +Q                    +  A
Sbjct: 238 NMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAA 297

Query: 234 KLNSQHDVLKLL 245
              S+ +VL+LL
Sbjct: 298 ADPSKQEVLQLL 309

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 62.0 bits (150), Expect = 2e-11
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 233
           N +D+   T L+ AA  G    V  LL+ GA   + N  G  P+D  
Sbjct: 277 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 323

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 56.2 bits (135), Expect = 1e-09
 Identities = 19/121 (15%), Positives = 46/121 (38%), Gaps = 1/121 (0%)

Query: 113 STMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKP 172
             +    Q  +     +RL    +Q+   S   +S    ++     ++   +  D  L+ 
Sbjct: 52  PVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQE 111

Query: 173 ILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV 232
           + D   +   +  +   ++  NT LH+       E V  L+++G+     +  G++ +  
Sbjct: 112 VNDAFPNTQLNLNIPV-DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVK 170

Query: 233 A 233
           A
Sbjct: 171 A 171

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 60.2 bits (147), Expect = 2e-11
 Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           ++ D    T L+ A      E    L++ GA + LQN    +P   A    + ++L  +
Sbjct: 33  DEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYM 91

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.8 bits (146), Expect = 3e-11
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 190 NDKDN---TALHYAAGY-----GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV 241
           + +++   TAL  A G        ++ V LL+ENGA  ++++  G+T +D A      ++
Sbjct: 134 DFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEI 193

Query: 242 LKLL 245
            K+L
Sbjct: 194 SKIL 197

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 59.0 bits (144), Expect = 6e-11
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N +++   +   YA   GR E +A +L++    +   N  G   +  A      D +KLL
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 56.7 bits (138), Expect = 4e-10
 Identities = 13/57 (22%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 192 KDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           K       L  A     K+   +L +    V   + +G TP+++A  N+  ++ K L
Sbjct: 2   KTYEVGALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKAL 58

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 53.2 bits (129), Expect = 7e-09
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAA-VTLQNMDGKTPIDVA-----KLNSQHD 240
           N  +     AL  AA  G  + V LLLE+G   +  QN  G T +  A           D
Sbjct: 100 NKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQD 159

Query: 241 VLKLL 245
           ++KLL
Sbjct: 160 IVKLL 164

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score = 39.4 bits (93), Expect = 4e-04
 Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLE 214
           + KDN   TA+ YA   G  E   +L +
Sbjct: 172 SIKDNSGRTAMDYANQKGYTEISKILAQ 199

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 23/56 (41%), Positives = 34/56 (60%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA 249
           NTALHYAA Y + +C+ LLL+  A V   N  G+T +D+A+     +  +LLE+  
Sbjct: 208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ 263

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 195 TALHYAAGYGRKECVA---LLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
             LH A     +  +     +++NG  +  +  DG T +  A L +Q D LKLL
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLL 226

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 58.8 bits (143), Expect = 1e-10
 Identities = 11/56 (19%), Positives = 22/56 (39%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N      L  ++  G  + V  ++      +L N +G T +  A      +++K L
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFL 89

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +  ++   TALH A   G  E V  L++ G  V   + DG TP+  A   +   V K L
Sbjct: 64  SLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFL 122

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 54.2 bits (131), Expect = 5e-09
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 6/62 (9%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGA---AVTLQNMDGKTPIDVAKLNSQHDVLK 243
           N  D+   T LH AA     +    L+E+GA   A+T  +M                  +
Sbjct: 97  NAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ 156

Query: 244 LL 245
            L
Sbjct: 157 FL 158

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 51.1 bits (123), Expect = 6e-08
 Identities = 5/56 (8%), Positives = 19/56 (33%), Gaps = 2/56 (3%)

Query: 191 DKD-NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +     +L        ++  +  + +G  V          +  + L  + D+++ +
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVKFNP-LPLALLLDSSLEGEFDLVQRI 56

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 48.4 bits (116), Expect = 5e-07
 Identities = 9/62 (14%), Positives = 15/62 (24%), Gaps = 4/62 (6%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
              D             G  +C   L      + + N      +   +     D L + E
Sbjct: 133 TYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQ-NDDELPMKE 191

Query: 247 KD 248
            D
Sbjct: 192 GD 193

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 58.7 bits (142), Expect = 1e-10
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
              D    TALH+A   G  E V  LL+ G  V  ++  G +P+ +A      +++K L
Sbjct: 34  TRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKAL 92

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 23/59 (38%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           NDKD+   + LH AA  G  E V  LL  GA V   N +G TP+  A   ++H++  +L
Sbjct: 67  NDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVML 125

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 8/56 (14%), Positives = 20/56 (35%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
              +    + A      E    +L + +  T  + D +T +  A      ++++ L
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFL 59

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.6 bits (108), Expect = 3e-06
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +  D TA+H AA  G  + V +LL   A+  +Q+ +G TP+ +A    + +  K L
Sbjct: 136 DHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFL 191

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 45.6 bits (108), Expect = 4e-06
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N    T LHYAA   R E   +LLE GA    ++    T +  A       ++ +L
Sbjct: 103 NQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHIL 158

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 44.9 bits (106), Expect = 7e-06
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + + NT LH A    R E    L+  GA++ ++N + KTP+ VAK      ++   
Sbjct: 169 DTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-----LLEKD 248
              L +AA  G +E V LL+E+GA +  Q+  G T + +  L             LL  D
Sbjct: 122 EHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD 181

Query: 249 A 249
            
Sbjct: 182 G 182

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 57.6 bits (140), Expect = 3e-10
 Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNM-----DGKTPIDVAKLNSQHDV 241
           + +     TALH AA Y   E   +L+E    +  + M     +G+T + +A +N   ++
Sbjct: 31  HQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNL 90

Query: 242 LKLL 245
           ++ L
Sbjct: 91  VRAL 94

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.4 bits (129), Expect = 9e-09
 Identities = 16/83 (19%), Positives = 25/83 (30%), Gaps = 16/83 (19%)

Query: 179 SGGPSAMMKYWNDKDN---TALHYAAGYGRKECVALLLENGA-------------AVTLQ 222
              P  + +    +     TALH A        V  LL  GA                  
Sbjct: 58  EAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNL 117

Query: 223 NMDGKTPIDVAKLNSQHDVLKLL 245
              G+ P+  A      ++++LL
Sbjct: 118 IYYGEHPLSFAACVGSEEIVRLL 140

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 53.0 bits (128), Expect = 1e-08
 Identities = 14/69 (20%), Positives = 21/69 (30%), Gaps = 13/69 (18%)

Query: 190 NDKDN---TALHYAAGYGRKECVA----LLLENGAAV------TLQNMDGKTPIDVAKLN 236
             +D+   T LH       K        LLL             + N  G TP  +A + 
Sbjct: 148 RAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVE 207

Query: 237 SQHDVLKLL 245
               + + L
Sbjct: 208 GNIVMFQHL 216

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 52.6 bits (127), Expect = 1e-08
 Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 195 TALHYAAGYGRKECVA-LLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           + L  AA     + ++ LL   G  V  +   G+T + +A L    +   +L
Sbjct: 5   SPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVL 56

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 56.9 bits (138), Expect = 4e-10
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           +  +    TALH A        V  L+  GA V   +  G TP+  A   +   +   L
Sbjct: 48  SQPNEEGITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMAL 106

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 56.5 bits (137), Expect = 7e-10
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNM-DGKTPIDVAKL--NSQHDVLK 243
           N  D+   T LH AA          L+++GAA+    + DG T  +          D   
Sbjct: 81  NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCAT 140

Query: 244 LL 245
            L
Sbjct: 141 YL 142

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 55.0 bits (133), Expect = 2e-09
 Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 6/62 (9%)

Query: 190 NDKDN------TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
                        L  AA  G  E V   ++     +  N +G T +  A   + + ++ 
Sbjct: 12  RKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVD 71

Query: 244 LL 245
            L
Sbjct: 72  FL 73

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 45.7 bits (109), Expect = 3e-06
 Identities = 9/63 (14%), Positives = 17/63 (26%), Gaps = 3/63 (4%)

Query: 190 NDKD-NTALHYAAGY--GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
              D  TA      Y  G  +C   L +   ++ L N      +         ++     
Sbjct: 117 TLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDELSFREG 176

Query: 247 KDA 249
           +  
Sbjct: 177 ESV 179

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 56.3 bits (136), Expect = 1e-09
 Identities = 14/67 (20%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
            +M   N  +N+AL      G  +  A L        + N  G TP+ +A    + ++ +
Sbjct: 179 LVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFR 238

Query: 244 -LLEKDA 249
            +L+++ 
Sbjct: 239 HILQREF 245

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 51.3 bits (123), Expect = 6e-08
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 16/72 (22%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAV-------------TLQNMDGKTPIDVA 233
            D+     +ALH A      +CV LL+ENGA V                   G+ P+ +A
Sbjct: 84  TDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLA 143

Query: 234 KLNSQHDVLKLL 245
               Q DV+  L
Sbjct: 144 ACTKQWDVVTYL 155

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 195 TALHYAAGYGRKECVALLLENG---AAVTLQNMDGKTPIDVAKLNSQHD 240
             L  AA   + + V  LLEN    A++   +  G T +    + + + 
Sbjct: 138 LPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNS 186

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 8/30 (26%), Positives = 13/30 (43%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAV 219
           N +  T L  AA  G+ E    +L+   + 
Sbjct: 218 NHQGLTPLKLAAKEGKIEIFRHILQREFSG 247

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 54.7 bits (132), Expect = 2e-09
 Identities = 7/65 (10%), Positives = 21/65 (32%), Gaps = 7/65 (10%)

Query: 190 NDKDNTALHYAAGYGRKECV-------ALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVL 242
                  +         +          +  ++G  + +++  G T ++  K   +   L
Sbjct: 111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIAL 170

Query: 243 KLLEK 247
           K++E 
Sbjct: 171 KMMED 175

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 49.7 bits (119), Expect = 1e-07
 Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 3/65 (4%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
             K N     L       R +    L+  GA +  +  +G T          +D+    E
Sbjct: 36  VLKSNILYDVLRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTE 95

Query: 247 KDAFL 251
                
Sbjct: 96  LCKIF 100

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 48.1 bits (115), Expect = 3e-07
 Identities = 11/68 (16%), Positives = 19/68 (27%), Gaps = 6/68 (8%)

Query: 190 NDKDNTALHYAAGYGRK------ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
             +  T        G        E   + LE GA +T      K  +     N   D  +
Sbjct: 72  TKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENE 131

Query: 244 LLEKDAFL 251
           ++     +
Sbjct: 132 MIPLYKLI 139

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 3/37 (8%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQN 223
             KD    TAL +     +   + ++ +      L+ 
Sbjct: 148 LIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE 184

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 40.8 bits (96), Expect = 1e-04
 Identities = 11/65 (16%), Positives = 18/65 (27%), Gaps = 5/65 (7%)

Query: 190 NDKDN-TALHYAAGYGRKECVALLLENGAAVTLQN---MDGKTPIDVAKLNSQHDVLK-L 244
           N       +  AA  G  E    L E G                +      +++ +   L
Sbjct: 2   NAMSEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFL 61

Query: 245 LEKDA 249
           + K A
Sbjct: 62  INKGA 66

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 55.9 bits (134), Expect = 3e-09
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE 246
              LH+A   G      L L+ GA +  ++ +G+ P+ +A   +  D++ LL 
Sbjct: 269 RGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 45.2 bits (106), Expect = 8e-06
 Identities = 18/102 (17%), Positives = 31/102 (30%)

Query: 146 ESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGR 205
           E  +           + +    P   P + +  + G           + T L  A     
Sbjct: 188 EPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANS 247

Query: 206 KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
                 LL+NGA V   +  G+ P+  A +     +  L  K
Sbjct: 248 LLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLK 289

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 55.0 bits (132), Expect = 6e-09
 Identities = 12/63 (19%), Positives = 19/63 (30%), Gaps = 3/63 (4%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNM--DGKTPIDVAKLNSQHDVLK-LLE 246
             ++  A   AA  G    +  L E      +  +  +      +A  N    VL  L E
Sbjct: 125 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCE 184

Query: 247 KDA 249
              
Sbjct: 185 LAP 187

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 181 GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGA---AVTLQNMDGKTPIDVAKLNS 237
            P+ +M     ++  A   AA  G    +  L E         +Q  +       A    
Sbjct: 151 APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 210

Query: 238 QHDVLK-LLEKDA 249
            H+V+  LL+   
Sbjct: 211 HHNVINFLLDCPV 223

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.9 bits (111), Expect = 3e-06
 Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 3/56 (5%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
               N  L  A   G +   ALLL   + +    +       + +   + D+  + 
Sbjct: 316 PGDANELLRLALRLGNQGACALLLSIPSVL---ALTKANNYYINETGGRLDLRAVA 368

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 45.7 bits (108), Expect = 5e-06
 Identities = 28/145 (19%), Positives = 48/145 (33%), Gaps = 11/145 (7%)

Query: 115 MQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPIL 174
           ++    +PQ   +   L   L Q   +S    SL   + K+ I   +   K    ++ +L
Sbjct: 9   IENYENDPQLRLIPWILWENLFQH-FISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLL 67

Query: 175 DEIESGGPSAMMKYWND------KDNTALHYAAGYGRK---ECVALLLENGAAVTLQNMD 225
               +       + W+D      K       AA  G     + + LLL +   V +   +
Sbjct: 68  CLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAE 127

Query: 226 GKTPIDVAKLNSQHDVLK-LLEKDA 249
                 +A  N    VL  L E   
Sbjct: 128 NYQAFRLAAENGHLHVLNRLCELAP 152

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 13/75 (17%), Positives = 23/75 (30%), Gaps = 3/75 (4%)

Query: 179 SGGPSAMMKYWNDKDNTALHYAA-GYGRKECVALLLENGAAVTLQNMDGKTP--IDVAKL 235
              P+        ++  A  +AA G G    +  LL+    +    +         V   
Sbjct: 184 ELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPF 243

Query: 236 NSQHDVLKLLEKDAF 250
            ++H        DAF
Sbjct: 244 IARHVNRLKEMHDAF 258

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 53.6 bits (129), Expect = 8e-09
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 17/73 (23%)

Query: 190 NDKDN---TALHYAAGYGRKECVALLLENGAAVTLQN--------------MDGKTPIDV 232
            D      TALH A     K  V LL+E GA V  Q                 G+ P+ +
Sbjct: 87  RDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSL 146

Query: 233 AKLNSQHDVLKLL 245
           A   +Q  ++  L
Sbjct: 147 AACTNQPHIVHYL 159

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 48.6 bits (116), Expect = 5e-07
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 13/68 (19%)

Query: 195 TALHYAAGYGRKECVALLLENG---AAVTLQNMDGKTP--IDVAKLNSQHDVLK------ 243
             L  AA   +   V  L ENG   A +  Q+  G T     VA  ++  +  K      
Sbjct: 142 LPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMY 201

Query: 244 --LLEKDA 249
             LL K A
Sbjct: 202 DLLLIKCA 209

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 45.2 bits (107), Expect = 7e-06
 Identities = 6/30 (20%), Positives = 11/30 (36%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAV 219
           N+   + L  AA  G+      ++    A 
Sbjct: 222 NNDGLSPLMMAAKTGKIGIFQHIIRREIAD 251

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 17/90 (18%)

Query: 177 IESGGPSAMMKYWNDKDNTALHYAAGYG---------RKECVALLLENGAAV-------T 220
            E+G   A ++  + + NT LH                 +   LLL   A +        
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEA 219

Query: 221 LQNMDGKTPIDVA-KLNSQHDVLKLLEKDA 249
           L N DG +P+ +A K         ++ ++ 
Sbjct: 220 LLNNDGLSPLMMAAKTGKIGIFQHIIRREI 249

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 50.9 bits (122), Expect = 9e-08
 Identities = 21/76 (27%), Positives = 28/76 (36%), Gaps = 14/76 (18%)

Query: 184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAV--------------TLQNMDGKTP 229
           A       K  TALH A        V LL+ENGA V                    G+ P
Sbjct: 92  ASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELP 151

Query: 230 IDVAKLNSQHDVLKLL 245
           + +A   +Q  ++K L
Sbjct: 152 LSLAACTNQLAIVKFL 167

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 47.5 bits (113), Expect = 1e-06
 Identities = 11/50 (22%), Positives = 20/50 (40%), Gaps = 3/50 (6%)

Query: 195 TALHYAAGYGRKECVALLLENG---AAVTLQNMDGKTPIDVAKLNSQHDV 241
             L  AA   +   V  LL+N    A ++ ++  G T +      + + V
Sbjct: 150 LPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTV 199

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 46.3 bits (110), Expect = 3e-06
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 177 IESGGPSAMMKYWNDKDNTALHYAAGYGRK----------------ECVALLLENGAAVT 220
           +++    A +   +   NT LH                           A L        
Sbjct: 168 LQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEE 227

Query: 221 LQNMDGKTPIDVAKLNSQHDVLK-LLEKDA 249
           + N  G TP+ +A  + +  VL  +L+++ 
Sbjct: 228 ITNRKGLTPLALAASSGKIGVLAYILQREI 257

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 7/51 (13%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHD 240
           N K  T L  AA  G+   +A +L+                  A  +  H 
Sbjct: 230 NRKGLTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHHHHH 273

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 12/72 (16%), Positives = 23/72 (31%), Gaps = 12/72 (16%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLE-------NGAAVTLQNMD-GKTPIDVAKLNSQHD- 240
              D  ++  A      + +  LL               ++ + GKT +  A LN  +  
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 241 ---VLKLLEKDA 249
              +  LL+   
Sbjct: 70  NDTIALLLDVAR 81

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 18/75 (24%)

Query: 189 WNDKDN----TALHYA---AGYGRKECVALLLENGAA-----------VTLQNMDGKTPI 230
              KD     T L  A      G+ + +ALLL+                T     G+T +
Sbjct: 46  SEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTAL 105

Query: 231 DVAKLNSQHDVLKLL 245
            +A       ++ LL
Sbjct: 106 HIAIERRNMTLVTLL 120

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.3 bits (114), Expect = 1e-06
 Identities = 33/216 (15%), Positives = 64/216 (29%), Gaps = 44/216 (20%)

Query: 56  FDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESI--PQFDTTQYY- 112
           F+         D  +    +    +     + +  +  L     +  I      +     
Sbjct: 9   FETGEHQYQYKD-ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67

Query: 113 ---------STMQQVMQ---NPQFMTMAERLGNALMQDPSMSHMM-----ESLTN---PT 152
                      +Q+ ++      +  +   +     + PSM   M     + L N     
Sbjct: 68  FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMYIEQRDRLYNDNQVF 126

Query: 153 KKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALL 212
            K  +  R+    +   L+  L E+                N  +    G G K  VAL 
Sbjct: 127 AKYNVS-RLQPYLK---LRQALLELRPA------------KNVLIDGVLGSG-KTWVALD 169

Query: 213 LENGAAVTLQNMDGKTP-IDVAKLNSQHDVLKLLEK 247
           +     V    MD K   +++   NS   VL++L+K
Sbjct: 170 VCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQK 204

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 31/238 (13%), Positives = 67/238 (28%), Gaps = 83/238 (34%)

Query: 67  DPSIKELAEQIAKDP-AFNSMAEQLQKTLHGANAEES------------IPQFD------ 107
           DP+    ++  +      +S+  +L++ L     E                 F+      
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL 269

Query: 108 -TTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAK-IK 165
            TT++               + + L  A     S+ H   +LT     D+++  + K + 
Sbjct: 270 LTTRFKQ-------------VTDFLSAATTTHISLDHHSMTLT----PDEVKSLLLKYLD 312

Query: 166 EDPS-LKPILDEIESGGP------SAMMK-------YWNDKDNTALHYAAGYGRKECVAL 211
             P  L     E+ +  P      +  ++        W   +   L        +  + +
Sbjct: 313 CRPQDLPR---EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI----IESSLNV 365

Query: 212 L--------------LENGAAVTLQ-------NMDGKTPIDVAKLNSQHDVLKLLEKD 248
           L                  A +          ++     + V  +N  H    L+EK 
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV--VNKLHK-YSLVEKQ 420

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.9
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.84
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.83
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.83
4gpm_A	169	Engineered protein OR264; de novo protein, structu	99.83
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.8
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.79
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.79
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.79
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.78
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.78
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.78
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.77
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.77
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.77
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.76
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.75
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.75
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.75
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.73
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.73
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.73
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.73
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.73
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.73
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.72
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.72
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.72
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.72
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.72
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.72
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.72
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.72
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.72
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.71
2etb_A	256	Transient receptor potential cation channel subfam	99.71
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.71
2rfa_A	232	Transient receptor potential cation channel subfa	99.71
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.71
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.7
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.7
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.7
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.7
2pnn_A	273	Transient receptor potential cation channel subfa	99.7
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.7
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.7
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.7
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.7
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.69
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.69
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.69
2rfa_A	232	Transient receptor potential cation channel subfa	99.69
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.69
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.69
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.69
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.69
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.68
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.68
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.68
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.68
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.68
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.68
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.68
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.68
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.68
2etb_A	256	Transient receptor potential cation channel subfam	99.68
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.68
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.67
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.67
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.67
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.67
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.67
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.67
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.67
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.67
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.66
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.66
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.65
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.65
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.65
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.65
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.65
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.65
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.65
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.65
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.64
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.64
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.64
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.63
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.62
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.62
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.61
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.61
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.61
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.61
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.61
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.59
2pnn_A	273	Transient receptor potential cation channel subfa	99.59
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.59
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.58
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.57
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.56
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.56
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.55
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.54
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.53
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.53
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.5
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.48
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.46
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.46
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.45
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.39
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.28

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.90  E-value=1.2e-22  Score=156.14  Aligned_cols=144  Identities=23%  Similarity=0.303  Sum_probs=115.2

Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCcHH
Q 025512           80 DPAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIE  158 (251)
Q Consensus        80 n~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~~~  158 (251)
                      +..+..+..+|+.|++        ++ .+..|++.++.+.....           .    ..+..+++.+++++..+..+
T Consensus        14 ~G~~~~v~~Ll~~Gad--------vn~~d~~g~t~l~~a~~~~~-----------~----~~~~~ll~~gad~~~~d~~g   70 (169)
T 4gpm_A           14 NGNKDRVKDLIENGAD--------VNASDSDGRTPLHHAAENGH-----------K----EVVKLLISKGADVNAKDSDG   70 (169)
T ss_dssp             TTCHHHHHHHHHTTCC--------TTCCCTTSCCHHHHHHHTTC-----------H----HHHHHHHHTTCCTTCCCTTS
T ss_pred             cCCHHHHHHHHHCCCC--------CCCcCCCCCCHHHHHHHcCC-----------H----HHHHHHHhcccchhhhccCC
Confidence            5567788888888888        66 67888888877766522           2    45566677777777665444


Q ss_pred             HHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 025512          159 ERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ  238 (251)
Q Consensus       159 ~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~  238 (251)
                      .+...++...+..+++++|+..|  +++|.+|.+|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+
T Consensus        71 ~TpLh~A~~~g~~~~v~~Ll~~g--advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~  148 (169)
T 4gpm_A           71 RTPLHHAAENGHKEVVKLLISKG--ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGN  148 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            33333333344567777888876  6789999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 025512          239 HDVLKLLEKD  248 (251)
Q Consensus       239 ~~iv~~Ll~~  248 (251)
                      .+|+++|+++
T Consensus       149 ~~iv~~Ll~~  158 (169)
T 4gpm_A          149 EEVVKLLEKQ  158 (169)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHHHC
Confidence            9999999985

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.84  E-value=1.2e-19  Score=151.95  Aligned_cols=184  Identities=24%  Similarity=0.302  Sum_probs=130.4

Q ss_pred             ccccccccccCCC---hhHHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCccchhchHHHHHHHHcCCcc-------
Q 025512           55 PFDFSAMSGLLND---PSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQF-------  124 (251)
Q Consensus        55 ~~~~s~~~sl~~d---p~~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~~~-------  124 (251)
                      .+++|+++|+..|   ++.+.++.+++ |..+++++|.   .+.......-.+..+.......+........+       
T Consensus        76 g~~is~v~sl~lD~w~~~~l~~~~~~G-N~~~n~i~E~---~l~~~~~~kP~~~s~~~~r~~~I~~Ky~~~~f~~~~~~~  151 (301)
T 2b0o_E           76 GVRFSRMQSLTLDLLGPSELLLALNMG-NTSFNEVMEA---QLPSHGGPKPSAESDMGTRRDYIMAKYVEHRFARRCTPE  151 (301)
T ss_dssp             CTTTCCEEETTTSCCCHHHHHHHHHCC-HHHHHHHHTT---TCCSSSCSCCCTTCCHHHHHHHHHHHHTSCTTSCCCC-C
T ss_pred             CCCcccccccCcCCCCHHHHHHHHHcC-CHHHHHHHHH---hhhhccCCCCCCcccHHHHHHHHHHHHHhhhhhcccCch
Confidence            3588999999888   77788888888 7778887764   22210000000112222223333332222111       


Q ss_pred             ---hHHHHHhhhhccCChHHHHHHHhcCCCCc---------cCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCC
Q 025512          125 ---MTMAERLGNALMQDPSMSHMMESLTNPTK---------KDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDK  192 (251)
Q Consensus       125 ---~~~a~~~~~~ll~~~~~~~ll~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~  192 (251)
                         +..+...++.    ..+..+++.+.+++.         .+....++++...+....+++++|+..+  ++++.+|..
T Consensus       152 ~~~L~~A~~~g~~----~~v~~ll~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g--advn~~d~~  225 (301)
T 2b0o_E          152 PQRLWTAICNRDL----LSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG--GHLDAKAAD  225 (301)
T ss_dssp             HHHHHHHHHTTCH----HHHHHHHHTTCCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHS--SCTTCCCTT
T ss_pred             HHHHhhhhhccCH----HHHHHHHhcCCcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcC--CCCCCCCCC
Confidence               1122223333    467777888887654         3455677777665567788899898887  678999999


Q ss_pred             CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          193 DNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       193 G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      |+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+|+++|+++
T Consensus       226 G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~  281 (301)
T 2b0o_E          226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQA  281 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999874

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.83  E-value=4.4e-20  Score=164.80  Aligned_cols=183  Identities=25%  Similarity=0.308  Sum_probs=133.8

Q ss_pred             ccccccccccCCC---hhHHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCc--cchhchHHHHHHHHcCCcc-----
Q 025512           55 PFDFSAMSGLLND---PSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQ--FDTTQYYSTMQQVMQNPQF-----  124 (251)
Q Consensus        55 ~~~~s~~~sl~~d---p~~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~--~~~~g~~~l~~~l~~~~~~-----  124 (251)
                      .+|+|+++|+..|   ++.++++..++ |..+|.++|.   .+..  .....|.  .+.......+........+     
T Consensus        57 g~~~s~vrsl~ld~w~~~~~~l~~~~G-N~~an~i~E~---~lp~--~~~~kP~~~s~~~~re~fIraky~~~~f~~~~~  130 (497)
T 3lvq_E           57 GVRFSRMQSLTLDLLGPSELLLALNMG-NTSFNEVMEA---QLPS--HGGPKPSAESDMGTRRDYIMAKYVEHRFARRCT  130 (497)
T ss_dssp             CTTTCCEEETTTSCCCGGGGTTTTTCC-HHHHHHHHTT---TCCS--SSCSCCCTTCCHHHHHHHHHHHHTTCTTSCCCC
T ss_pred             ccccceecccccCCCCHHHHHHHHHHh-hHHHHHHHHh---hccc--ccCCCCCCcCcHHHHHHHHHHHhhccccccccc
Confidence            3589999999888   77778888888 7778887764   2210  0001121  2222222233332222211     


Q ss_pred             -----hHHHHHhhhhccCChHHHHHHHhcCCCCcc---------CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccC
Q 025512          125 -----MTMAERLGNALMQDPSMSHMMESLTNPTKK---------DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWN  190 (251)
Q Consensus       125 -----~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d  190 (251)
                           +..+...++.    ..+..+++.+.+++..         +....++++.....+..+++++|+..|  +++|.+|
T Consensus       131 ~~~~~L~~A~~~g~~----~~v~~ll~~g~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~g--a~vn~~d  204 (497)
T 3lvq_E          131 PEPQRLWTAICNRDL----LSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNG--GHLDAKA  204 (497)
T ss_dssp             -CHHHHHHHHHHTCH----HHHHHHHHTTCCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHS--CCTTCCC
T ss_pred             ccHHHHHHHHhccCH----HHHHHHHhhcccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcC--CCCCccC
Confidence                 2233344444    6788889999887543         566677776656677788888888887  7889999


Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          191 DKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       191 ~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ..|+||||+|+..|+.++|++|+++||+++.+|..|+||||+|+..|+.+|+++|+++.
T Consensus       205 ~~g~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~g  263 (497)
T 3lvq_E          205 ADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQ  263 (497)
T ss_dssp             SSSCCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             CCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999864

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.83  E-value=5.1e-20  Score=152.55  Aligned_cols=182  Identities=23%  Similarity=0.273  Sum_probs=126.9

Q ss_pred             ccccccccccCCC---hhHHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCc--cchhchHHHHHHHHcCCc------
Q 025512           55 PFDFSAMSGLLND---PSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQ--FDTTQYYSTMQQVMQNPQ------  123 (251)
Q Consensus        55 ~~~~s~~~sl~~d---p~~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~--~~~~g~~~l~~~l~~~~~------  123 (251)
                      .+|+|+|+|+..|   ++.+.++..++ |..++++++..   +.  .+....|.  .+.......+........      
T Consensus        51 g~~is~v~s~~~d~~~~~~l~~~~~~G-N~~~n~i~e~~---l~--~~~~~kP~~~s~~~~~~~fI~aKYl~~~f~~~~~  124 (278)
T 1dcq_A           51 GVHYSRMQSLTLDVLGTSELLLAKNIG-NAGFNEIMECC---LP--SEDPVKPNPGSDMIARKDYITAKYMERRYARKKH  124 (278)
T ss_dssp             CTTTCCEEETTTSCCCGGGGHHHHHSC-HHHHHHHHTTT---CC--SSSCCSCCTTCCHHHHHHHHHHHHTTCTTSCCCS
T ss_pred             CCCcceeeeeecCCCCHHHHHHHHHcC-cHHHHHHHHhh---CC--hhhcCCCCCCCCHHHHHHHHHHHHHHhhcccccc
Confidence            3588999999887   77788888888 88888887642   21  11110111  111111111111111000      


Q ss_pred             --chH------HHHHhhhhccCChHHHHHHHhcCCCC---------ccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccc
Q 025512          124 --FMT------MAERLGNALMQDPSMSHMMESLTNPT---------KKDQIEERMAKIKEDPSLKPILDEIESGGPSAMM  186 (251)
Q Consensus       124 --~~~------~a~~~~~~ll~~~~~~~ll~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v  186 (251)
                        ...      .+...++.    ..+..++..+.+.+         ..+....+.++...+....+++++|+..|  +++
T Consensus       125 ~~~~~~l~~l~~a~~~~d~----~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~g--a~i  198 (278)
T 1dcq_A          125 ADTAAKLHSLCEAVKTRDI----FGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNS--GNL  198 (278)
T ss_dssp             SSHHHHHHHHHHHHHTTCH----HHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHC--SCT
T ss_pred             cccchhhhhhhhHhhhccc----HHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCC--CCc
Confidence              000      11111222    34555667666643         34567778888776667788888888887  678


Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          187 KYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       187 ~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      |.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       199 n~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  260 (278)
T 1dcq_A          199 DKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQA  260 (278)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999875

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=99.83  E-value=4.9e-20  Score=141.60  Aligned_cols=109  Identities=28%  Similarity=0.367  Sum_probs=87.8

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      ..+..+++.+++++..+..+.+...+........++.+|+..+  .+++.+|.+|+||||+|+..|+.++|++|+++|++
T Consensus        18 ~~v~~Ll~~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g--ad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad   95 (169)
T 4gpm_A           18 DRVKDLIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG--ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD   95 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc--cchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCC
Confidence            5566666666666655544443333344444556666777776  67899999999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          219 VTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       219 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ++.+|..|+||||+|+..|+.++|++|+++.
T Consensus        96 vn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~g  126 (169)
T 4gpm_A           96 VNAKDSDGRTPLHHAAENGHKEVVKLLISKG  126 (169)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999999999999999999863

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.80  E-value=1.5e-19  Score=149.10  Aligned_cols=137  Identities=19%  Similarity=0.171  Sum_probs=77.6

Q ss_pred             HHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCcHHHHHHHHh
Q 025512           87 AEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIK  165 (251)
Q Consensus        87 ~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~  165 (251)
                      ..++..|++        ++ .+.+|++.++.+...+.           .    ..+..+++.+++++.....+.......
T Consensus        70 ~~Ll~~Gad--------vn~~d~~G~TpLh~A~~~g~-----------~----~~v~~Ll~~~a~~~~~~~~g~t~l~~a  126 (269)
T 4b93_B           70 AKVPASGLG--------VNVTSQDGSSPLHVAALHGR-----------A----DLIPLLLKHGANAGARNADQAVPLHLA  126 (269)
T ss_dssp             -----CCCC--------TTCCCTTSCCHHHHHHHTTC-----------T----THHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             HHHHHCCCC--------CCCcCCCCCCHHHHHHHcCc-----------H----HHHHHHHhcCCCcCccCCCCCCccccc
Confidence            345555665        45 56667777666654421           1    344445555555544333222222222


Q ss_pred             cCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 025512          166 EDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL  245 (251)
Q Consensus       166 ~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~L  245 (251)
                      ......+++++|+..+  .+++.+|..|+||||+|+..|+.++|++|+++|++++.++..|+||||+|+..|+.++|++|
T Consensus       127 ~~~~~~~~~~~Ll~~g--~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~L  204 (269)
T 4b93_B          127 CQQGHFQVVKCLLDSN--AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELL  204 (269)
T ss_dssp             HHHTCHHHHHHHHHTT--CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHH
T ss_pred             cccChHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHH
Confidence            2223344555555554  45666677777777777777777777777777777777777777777777777777777777


Q ss_pred             HhC
Q 025512          246 EKD  248 (251)
Q Consensus       246 l~~  248 (251)
                      +++
T Consensus       205 l~~  207 (269)
T 4b93_B          205 LLH  207 (269)
T ss_dssp             HHT
T ss_pred             HHC
Confidence            664

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.79  E-value=2.8e-19  Score=132.02  Aligned_cols=125  Identities=15%  Similarity=0.227  Sum_probs=99.2

Q ss_pred             cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCcc
Q 025512          106 FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAM  185 (251)
Q Consensus       106 ~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~  185 (251)
                      .+..+.+.++.+...           +..    ..+..+++.+.+++..+..+.+...++.. ...+++++|+..+  .+
T Consensus         8 ~~~~g~t~L~~A~~~-----------~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~   69 (136)
T 1d9s_A            8 LGGSSDAGLATAAAR-----------GQV----ETVRQLLEAGADPNALNRFGRRPIQVMMM-GSAQVAELLLLHG--AE   69 (136)
T ss_dssp             CCCCCSCHHHHHHHT-----------TCH----HHHHHHHHTTCCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHT--CC
T ss_pred             CCCCCccHHHHHHHc-----------CCH----HHHHHHHHcCCCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCC--CC
Confidence            455666676666655           222    45556666666666655444444444445 6778888888876  67


Q ss_pred             ccccCCC-CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          186 MKYWNDK-DNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       186 v~~~d~~-G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ++.+|.. |+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++
T Consensus        70 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~  133 (136)
T 1d9s_A           70 PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA  133 (136)
T ss_dssp             SSCCBTTTTBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHH
T ss_pred             CCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            8889999 99999999999999999999999999999999999999999999999999999975

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.79  E-value=9.8e-19  Score=150.14  Aligned_cols=105  Identities=18%  Similarity=0.246  Sum_probs=87.3

Q ss_pred             hHHHHHHHhcCCCCccC-----cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHH
Q 025512          139 PSMSHMMESLTNPTKKD-----QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLL  213 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll  213 (251)
                      ..+..+++.+.+++..+     ....+.++..   ...+++++|+..+  ++++..|..|+||||+|+..|+.++|++|+
T Consensus       214 ~~v~~LL~~Gadvn~~~~~~~g~TpLh~Aa~~---g~~~iv~~LL~~G--advn~~d~~G~TpLh~A~~~g~~~~v~~LL  288 (368)
T 3jue_A          214 PTMADALAHGADVNWVNGGQDNATPLIQATAA---NSLLACEFLLQNG--ANVNQADSAGRGPLHHATILGHTGLACLFL  288 (368)
T ss_dssp             HHHHHHHHTTCCTTCCCTTTTCCCHHHHHHHT---TCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCccccccCCCCHHHHHHHC---CCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            46777788888877554     3445555544   4467777788876  678889999999999999999999999999


Q ss_pred             HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          214 ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       214 ~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ++|++++.+|..|+||||+|+..|+.+|+++|+..
T Consensus       289 ~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~  323 (368)
T 3jue_A          289 KRGADLGARDSEGRDPLTIAMETANADIVTLLRLA  323 (368)
T ss_dssp             HTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            99999999999999999999999999999999864

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.79  E-value=2.9e-18  Score=131.14  Aligned_cols=148  Identities=22%  Similarity=0.243  Sum_probs=111.8

Q ss_pred             HHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhc
Q 025512           70 IKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESL  148 (251)
Q Consensus        70 ~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~  148 (251)
                      .+..|.+.+   .+..+..++..+.+        ++ .+..|++.++.+...           +..    ..+..+++.+
T Consensus        17 ~l~~A~~~g---~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~-----------~~~----~~v~~Ll~~g   70 (169)
T 2y1l_E           17 KLLEAARAG---RDDEVRILMANGAD--------VNAEDASGWTPLHLAAFN-----------GHL----EIVEVLLKNG   70 (169)
T ss_dssp             HHHHHHHHT---CHHHHHHHHHTTCC--------TTCCCTTSCCHHHHHHHT-----------TCH----HHHHHHHHTT
T ss_pred             hHHHHHHcC---CHHHHHHHHHCCCC--------CCCCCCCCCCHHHHHHHc-----------CCH----HHHHHHHHcC
Confidence            344444444   45556666677766        44 566777777776655           222    4556666777


Q ss_pred             CCCCccCc---HHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC
Q 025512          149 TNPTKKDQ---IEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMD  225 (251)
Q Consensus       149 ~~~~~~~~---~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~  225 (251)
                      .+++..+.   ...+.++..   +..+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..
T Consensus        71 ~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~  145 (169)
T 2y1l_E           71 ADVNAVDHAGMTPLRLAALF---GHLEIVEVLLKNG--ADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKF  145 (169)
T ss_dssp             CCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTT
T ss_pred             CCCCccCCCCCCHHHHHHHc---CCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCC
Confidence            66665543   444555444   4467777788776  678888999999999999999999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhC
Q 025512          226 GKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       226 G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      |+||||+|+..|+.+++++|+++
T Consensus       146 g~t~l~~A~~~~~~~~~~~L~~~  168 (169)
T 2y1l_E          146 GKTAFDISIDNGNEDLAEILQKL  168 (169)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTC
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHc
Confidence            99999999999999999999985

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.78  E-value=2.2e-18  Score=129.66  Aligned_cols=137  Identities=19%  Similarity=0.162  Sum_probs=104.1

Q ss_pred             hHHHHHHHHHhhhcCCCCCCCCCccchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccC---cHH
Q 025512           82 AFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKD---QIE  158 (251)
Q Consensus        82 ~f~~i~~~l~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~---~~~  158 (251)
                      .+..+..+++.+.+        .+.+..|.+.++.+...           +..    ..+..+++.+.+++..+   ...
T Consensus        14 ~~~~v~~Ll~~g~~--------~~~~~~g~t~L~~A~~~-----------~~~----~~v~~Ll~~g~~~~~~~~~g~t~   70 (153)
T 1awc_B           14 QDDEVRILMANGAP--------FTTDWLGTSPLHLAAQY-----------GHF----STTEVLLRAGVSRDARTKVDRTP   70 (153)
T ss_dssp             CHHHHHHHHHHTCC--------CCCCTTCCCHHHHHHHH-----------TCH----HHHHHHHTTTCCTTCCCTTCCCH
T ss_pred             CHHHHHHHHHcCCC--------CCcCCCCCCHHHHHHHc-----------CCH----HHHHHHHHcCCCCCCCCCCCCCH
Confidence            45666667777765        34556677777666554           222    34555566666655443   445


Q ss_pred             HHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 025512          159 ERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ  238 (251)
Q Consensus       159 ~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~  238 (251)
                      .+.++..+   ..+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus        71 L~~A~~~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~  145 (153)
T 1awc_B           71 LHMAASEG---HANIVEVLLKHG--ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             HHHHHHHT---CHHHHHHHHTTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             HHHHHHcC---hHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCC
Confidence            55555544   456777788876  6788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 025512          239 HDVLKLLE  246 (251)
Q Consensus       239 ~~iv~~Ll  246 (251)
                      .+++++|.
T Consensus       146 ~~i~~~L~  153 (153)
T 1awc_B          146 EDLAEILQ  153 (153)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHHhC
Confidence            99999983

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.78  E-value=2.7e-18  Score=118.36  Aligned_cols=87  Identities=31%  Similarity=0.426  Sum_probs=75.8

Q ss_pred             HHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 025512          158 EERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS  237 (251)
Q Consensus       158 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  237 (251)
                      ..+.++..++   .+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus         5 ~L~~A~~~~~---~~~v~~Ll~~g--~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~   79 (93)
T 1n0q_A            5 PLHLAARNGH---LEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (93)
T ss_dssp             HHHHHHHHTC---HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHcCC---HHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcC
Confidence            4445554443   56777777776  678899999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCC
Q 025512          238 QHDVLKLLEKDA  249 (251)
Q Consensus       238 ~~~iv~~Ll~~~  249 (251)
                      +.+++++|+++.
T Consensus        80 ~~~~~~~Ll~~g   91 (93)
T 1n0q_A           80 HLEVVKLLLEAG   91 (93)
T ss_dssp             CHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcC
Confidence            999999999864

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.78  E-value=2e-18  Score=127.37  Aligned_cols=105  Identities=27%  Similarity=0.284  Sum_probs=86.5

Q ss_pred             hHHHHHHHhcCCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC
Q 025512          139 PSMSHMMESLTNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN  215 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~  215 (251)
                      ..+..+++.+.+++..+   ....+.++..+   ..+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++
T Consensus        28 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~  102 (136)
T 2jab_A           28 DEVRILMANGADVNAKDEYGLTPLYLATAHG---HLEIVEVLLKNG--ADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH  102 (136)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT---CHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC---CHHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            45555666666655543   44555555554   366777777776  67888999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          216 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       216 Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      |++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       103 g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~  135 (136)
T 2jab_A          103 GADVNAQDKFGKTAFDISIGNGNEDLAEILQKL  135 (136)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC
T ss_pred             CCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHc
Confidence            999999999999999999999999999999986

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.77  E-value=2.7e-18  Score=130.81  Aligned_cols=139  Identities=19%  Similarity=0.261  Sum_probs=106.7

Q ss_pred             hHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccC---cH
Q 025512           82 AFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKD---QI  157 (251)
Q Consensus        82 ~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~---~~  157 (251)
                      .+..+..++..+.+        ++ .+..|++.++.+...           +..    ..+..+++.+.+++..+   ..
T Consensus        15 ~~~~v~~ll~~~~~--------~~~~~~~g~t~L~~A~~~-----------~~~----~~v~~Ll~~g~~~~~~~~~g~t   71 (167)
T 3v31_A           15 EMLYLATRIEQENV--------INHTDEEGFTPLMWAAAH-----------GQI----AVVEFLLQNGADPQLLGKGRES   71 (167)
T ss_dssp             CHHHHHHHHHHSSC--------TTCCCTTSCCHHHHHHHT-----------TCH----HHHHHHHHTTCCTTCCCTTCCC
T ss_pred             CHHHHHHHHHcCCC--------cCCCCCCCCCHHHHHHHC-----------CCH----HHHHHHHHcCCCCCCcCCCCCc
Confidence            45566666666655        44 566777777776655           222    45566666666665443   44


Q ss_pred             HHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 025512          158 EERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS  237 (251)
Q Consensus       158 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  237 (251)
                      ..+.++...   ..+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus        72 ~L~~A~~~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~  146 (167)
T 3v31_A           72 ALSLACSKG---YTDIVKMLLDCG--VDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALG  146 (167)
T ss_dssp             HHHHHHHHT---CHHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             HHHHHHHcC---CHHHHHHHHHCC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC
Confidence            555555554   456667777766  678889999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhC
Q 025512          238 QHDVLKLLEKD  248 (251)
Q Consensus       238 ~~~iv~~Ll~~  248 (251)
                      +.+++++|+++
T Consensus       147 ~~~~~~~L~~~  157 (167)
T 3v31_A          147 YRSVQQVIESH  157 (167)
T ss_dssp             CHHHHHHHHHH
T ss_pred             cHHHHHHHHHH
Confidence            99999999875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.77  E-value=3.1e-18  Score=131.18  Aligned_cols=144  Identities=19%  Similarity=0.244  Sum_probs=106.5

Q ss_pred             chHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCcHHH
Q 025512           81 PAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEE  159 (251)
Q Consensus        81 ~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~~~~  159 (251)
                      ..+..+..++..+...       .+ .+..|++.++.+...           +..    ..+..+++.+.+++..+..+.
T Consensus        13 g~~~~v~~ll~~~~~~-------~~~~~~~g~t~L~~A~~~-----------~~~----~~v~~Ll~~g~~~~~~~~~g~   70 (172)
T 3v30_A           13 GELDQLKEHLRKGDNL-------VNKPDERGFTPLIWASAF-----------GEI----ETVRFLLEWGADPHILAKERE   70 (172)
T ss_dssp             TCHHHHHHHHTTCSGG-------GGCCCTTSCCHHHHHHHT-----------TCH----HHHHHHHHHTCCTTCCCTTCC
T ss_pred             CCHHHHHHHHHcCccc-------ccCCCCCCCCHHHHHHHc-----------CCH----HHHHHHHHcCCCchhhcccCC
Confidence            3455555565554331       22 456677777766654           222    456667777777766544333


Q ss_pred             HHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q 025512          160 RMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH  239 (251)
Q Consensus       160 ~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~  239 (251)
                      +...++...+..+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.
T Consensus        71 t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~  148 (172)
T 3v30_A           71 SALSLASTGGYTDIVGLLLERD--VDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYR  148 (172)
T ss_dssp             CHHHHHHHTTCHHHHHHHHTTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcH
Confidence            3333333344567788888876  67888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 025512          240 DVLKLLEKD  248 (251)
Q Consensus       240 ~iv~~Ll~~  248 (251)
                      +++++|+++
T Consensus       149 ~~~~~L~~~  157 (172)
T 3v30_A          149 KVQQVIENH  157 (172)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999875

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.77  E-value=3.5e-18  Score=133.23  Aligned_cols=149  Identities=19%  Similarity=0.186  Sum_probs=109.8

Q ss_pred             hHHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHh
Q 025512           69 SIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMES  147 (251)
Q Consensus        69 ~~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~  147 (251)
                      ..+..|...+.-.   .+..++..+.+        ++ .+..|++.++.+...           +..    ..+..+++.
T Consensus        37 t~L~~A~~~g~~~---~v~~Ll~~~~~--------~~~~~~~g~t~L~~A~~~-----------~~~----~~v~~Ll~~   90 (192)
T 2rfm_A           37 TPLMVACMLGMEN---AIDKLVENFDK--------LEDKDIEGSTALIWAVKN-----------NRL----GIAEKLLSK   90 (192)
T ss_dssp             CHHHHHHHHTCGG---GHHHHHHHHCC--------TTCCCTTSCCHHHHHHHT-----------TCH----HHHHHHHHH
T ss_pred             CHHHHHHHcCCHH---HHHHHHHhccc--------cccccccCccHHHHHHHc-----------CCH----HHHHHHHHC
Confidence            3455555555322   33344555655        44 566677777776655           222    456666777


Q ss_pred             cCCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 025512          148 LTNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNM  224 (251)
Q Consensus       148 ~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~  224 (251)
                      +.+++..+   ....+.++..+   ..+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        91 g~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~  165 (192)
T 2rfm_A           91 GSNVNTKDFSGKTPLMWSIIFG---YSEMSYFLLEHG--ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL  165 (192)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHHT---CHHHHHHHHHTT--CCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCT
T ss_pred             CCCCCCCCCCCCcHHHHHHHcC---CHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            77766554   44555555544   456777777776  67888999999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          225 DGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       225 ~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      .|+||||+|+..|+.+++++|+++
T Consensus       166 ~g~t~l~~A~~~~~~~~v~~Ll~~  189 (192)
T 2rfm_A          166 TGLTAEASARIFGRQEVIKIFTEV  189 (192)
T ss_dssp             TSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHhCcHHHHHHHHhc
Confidence            999999999999999999999875

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.76  E-value=2.5e-18  Score=130.20  Aligned_cols=106  Identities=24%  Similarity=0.273  Sum_probs=86.0

Q ss_pred             hHHHHHHHhcCCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC
Q 025512          139 PSMSHMMESLTNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN  215 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~  215 (251)
                      ..+..+++.+.+++..+   ....+.++..+   ..+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++
T Consensus        51 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  125 (162)
T 1ihb_A           51 EIARRLLLRGANPDLKDRTGFAVIHDAARAG---FLDTLQTLLEFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH  125 (162)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            35555566666665543   44455555544   466777777776  67888999999999999999999999999999


Q ss_pred             CCC-CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          216 GAA-VTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       216 Gad-~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      |++ ++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       126 g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  160 (162)
T 1ihb_A          126 TASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  160 (162)
T ss_dssp             SCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             cCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhC
Confidence            998 6999999999999999999999999999864

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.75  E-value=3.1e-18  Score=141.51  Aligned_cols=138  Identities=20%  Similarity=0.213  Sum_probs=101.9

Q ss_pred             hhchHHHHHHHHcCCc-chHHHHHhhhhcc------------CChHHHHHHHhcCCCCcc---CcHHHHHHHHhcCCCcH
Q 025512          108 TTQYYSTMQQVMQNPQ-FMTMAERLGNALM------------QDPSMSHMMESLTNPTKK---DQIEERMAKIKEDPSLK  171 (251)
Q Consensus       108 ~~g~~~l~~~l~~~~~-~~~~a~~~~~~ll------------~~~~~~~ll~~~~~~~~~---~~~~~~~~~~~~~~~~~  171 (251)
                      ..|+.++++.|++.++ .++..+..|...+            ....+..+++.+...+..   +....+.++..+   ..
T Consensus       120 ~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpLh~A~~~g---~~  196 (276)
T 4hbd_A          120 SHANFPVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALMLAVSHG---RV  196 (276)
T ss_dssp             HTTCHHHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCTTCCCTTTCCCHHHHHHHTT---CH
T ss_pred             HCCCHHHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCCccccCCCCCCHHHHHHHcC---CH
Confidence            4556666666666655 3333322222110            013555667777665554   445555555544   46


Q ss_pred             HHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 025512          172 PILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  250 (251)
Q Consensus       172 ~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~  250 (251)
                      +++++|+..|  ++++.+|..|+||||+|+..|+.++|++|++ .|++++.+|..|+||||+|+..|+.+++++|+++.-
T Consensus       197 ~~v~~Ll~~g--ad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~~  274 (276)
T 4hbd_A          197 DVVKALLACE--ADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRMN  274 (276)
T ss_dssp             HHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHCC
T ss_pred             HHHHHHHhCC--CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhccC
Confidence            7777788876  6789999999999999999999999999999 899999999999999999999999999999998653

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.75  E-value=2e-18  Score=130.43  Aligned_cols=108  Identities=20%  Similarity=0.258  Sum_probs=84.8

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCch-HHHHHHHcCCHHHHHHHHHCCC
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNT-ALHYAAGYGRKECVALLLENGA  217 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~T-pLh~Aa~~g~~~~v~~Ll~~Ga  217 (251)
                      ..+..+++.+.+++..+..+.+...++. .+..+++++|+..+  .+++.+|..|+| |||+|+..|+.++|++|+++|+
T Consensus        26 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g--~~~~~~d~~g~ttpL~~A~~~~~~~~v~~Ll~~ga  102 (156)
T 1bi7_B           26 EEVRALLEAGANPNAPNSYGRRPIQVMM-MGSARVAELLLLHG--AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGA  102 (156)
T ss_dssp             HHHHHHHTTTCCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTT--CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTC
T ss_pred             HHHHHHHHcCCCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHHCCCHHHHHHHHHcCC
Confidence            3444444445444444333322222222 45678888888886  678899999999 9999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          218 AVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       218 d~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       103 ~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~g  134 (156)
T 1bi7_B          103 RLDVRDAWGRLPVDLAEELGHRDVARYLRAAA  134 (156)
T ss_dssp             CSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC
T ss_pred             CCcccCCCCCCHHHHHHHhCHHHHHHHHHHcC
Confidence            99999999999999999999999999999864

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.75  E-value=9.4e-18  Score=126.32  Aligned_cols=107  Identities=15%  Similarity=0.237  Sum_probs=85.6

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      ..+..+++.+.+++..+..+.+...++...+..+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++ ++
T Consensus        49 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~  125 (156)
T 1bd8_A           49 AIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHG--ADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SD  125 (156)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SC
T ss_pred             HHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cC
Confidence            4555666667666655443333333333334567777788876  67888999999999999999999999999999 99


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          219 VTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       219 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ++.+|..|+||||+|+..|+.+++++|+++
T Consensus       126 ~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          126 LHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             TTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            999999999999999999999999999986

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.73  E-value=9.7e-18  Score=127.48  Aligned_cols=124  Identities=25%  Similarity=0.234  Sum_probs=93.2

Q ss_pred             cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCcH---HHHHHHHhcCCCcHHHHHHHHhcCC
Q 025512          106 FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQI---EERMAKIKEDPSLKPILDEIESGGP  182 (251)
Q Consensus       106 ~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~L~~~~~  182 (251)
                      .+..+++.++.+...           +..    ..+..+++.+.+++..+..   ..+.++..   ...+++++|+..+ 
T Consensus        38 ~~~~g~t~L~~A~~~-----------~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g-   98 (165)
T 3twr_A           38 IEGRQSTPLHFAAGY-----------NRV----SVVEYLLQHGADVHAKDKGGLVPLHNACSY---GHYEVAELLVKHG-   98 (165)
T ss_dssp             TTTTCCCHHHHHHHT-----------TCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTT-
T ss_pred             cccCCCCHHHHHHHc-----------ChH----HHHHHHHhcCCCCCccCCCCCCHHHHHHHc---CcHHHHHHHHhCC-
Confidence            455566666665554           222    4566667777776655443   44444443   4566777777776 


Q ss_pred             CccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 025512          183 SAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  250 (251)
Q Consensus       183 ~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~  250 (251)
                       .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+. ++.+|+++|+++.-
T Consensus        99 -~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A           99 -AVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             -CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             -CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence             6678889999999999999999999999999999999999999999999777 89999999998753

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.73  E-value=1.8e-17  Score=119.77  Aligned_cols=106  Identities=27%  Similarity=0.373  Sum_probs=84.4

Q ss_pred             hHHHHHHHhcCCCCcc---CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC
Q 025512          139 PSMSHMMESLTNPTKK---DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN  215 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~  215 (251)
                      ..+..+++.+.+++..   +....+.++...   ..+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++
T Consensus        16 ~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~~---~~~~~~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~   90 (126)
T 1n0r_A           16 EVVKLLLEAGADVNAKDKNGRTPLHLAARNG---HLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA   90 (126)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHHT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCcHHHHHHHcC---cHHHHHHHHHcC--CCCcccCCCCCcHHHHHHHcChHHHHHHHHHc
Confidence            3444455555554443   344455555544   456777777776  56788899999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          216 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       216 Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      |++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus        91 g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~G  124 (126)
T 1n0r_A           91 GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG  124 (126)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT
T ss_pred             CCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            9999999999999999999999999999999753

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.73  E-value=2.2e-17  Score=128.69  Aligned_cols=123  Identities=24%  Similarity=0.289  Sum_probs=96.9

Q ss_pred             chhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCC
Q 025512          107 DTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPS  183 (251)
Q Consensus       107 ~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~  183 (251)
                      +..|++.++.+...           +..    ..+..+++.+.+++..+   ....+.++..   +..+++++|+..+  
T Consensus        32 d~~g~t~L~~A~~~-----------g~~----~~v~~Ll~~~~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g--   91 (192)
T 2rfm_A           32 DSYNRTPLMVACML-----------GME----NAIDKLVENFDKLEDKDIEGSTALIWAVKN---NRLGIAEKLLSKG--   91 (192)
T ss_dssp             CTTCCCHHHHHHHH-----------TCG----GGHHHHHHHHCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHT--
T ss_pred             CCCCCCHHHHHHHc-----------CCH----HHHHHHHHhccccccccccCccHHHHHHHc---CCHHHHHHHHHCC--
Confidence            55677777776655           222    45566666666665544   4444555444   4466777777776  


Q ss_pred             ccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       184 ~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus        92 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  157 (192)
T 2rfm_A           92 SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELG  157 (192)
T ss_dssp             CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            568888999999999999999999999999999999999999999999999999999999999863

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.73  E-value=4.5e-17  Score=132.50  Aligned_cols=172  Identities=16%  Similarity=0.168  Sum_probs=112.4

Q ss_pred             HHHHHHHHhcCchHHHHHHHHHhhhcCCC-CCCCCCc---cchhchHHHHHHHHcCCc-chHHHHHhhhhc-------cC
Q 025512           70 IKELAEQIAKDPAFNSMAEQLQKTLHGAN-AEESIPQ---FDTTQYYSTMQQVMQNPQ-FMTMAERLGNAL-------MQ  137 (251)
Q Consensus        70 ~~~la~~i~~n~~f~~i~~~l~~~~~~~~-~~~~~~~---~~~~g~~~l~~~l~~~~~-~~~~a~~~~~~l-------l~  137 (251)
                      .+..|...+   .+..+..++..+++... +..+...   ....++.++++.|++.+. .+...+..+...       ..
T Consensus        60 ~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~  136 (253)
T 1yyh_A           60 ALHLAARYS---RSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAV  136 (253)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTC
T ss_pred             HHHHHHHcC---CHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcCh
Confidence            344454443   35556666777766210 0111111   123455566666666543 222111111110       11


Q ss_pred             ChHHHHHHHhcCCCCccCc---HHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 025512          138 DPSMSHMMESLTNPTKKDQ---IEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLE  214 (251)
Q Consensus       138 ~~~~~~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~  214 (251)
                      ...+..+++.+.+++..+.   ...+.++..+   ..+++++|+..|  .+++.+|..|+||||+|+..|+.+++++|++
T Consensus       137 ~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~---~~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  211 (253)
T 1yyh_A          137 EGMLEDLINSHADVNAVDDLGKSALHWAAAVN---NVDAAVVLLKNG--ANKDMQNNREETPLFLAAREGSYETAKVLLD  211 (253)
T ss_dssp             SSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC---CHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHH
Confidence            2567777888888776554   4445555444   466777777776  6678889999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          215 NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       215 ~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +|++++.+|..|+||||+|+..|+.+|+++|...+
T Consensus       212 ~ga~~~~~d~~g~tpl~~A~~~g~~~i~~~l~~~~  246 (253)
T 1yyh_A          212 HFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEH  246 (253)
T ss_dssp             TTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHC--
T ss_pred             cCCCccccccCCCCHHHHHHHcCCHHHHHHHHHHh
Confidence            99999999999999999999999999999998754

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.73  E-value=2.7e-17  Score=124.47  Aligned_cols=107  Identities=18%  Similarity=0.239  Sum_probs=85.4

Q ss_pred             HHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCC
Q 025512          140 SMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAV  219 (251)
Q Consensus       140 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~  219 (251)
                      .+..+++.+.+++..+..+.....++.. +..+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|+++
T Consensus        20 ~v~~Ll~~~~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~   96 (162)
T 1ihb_A           20 QLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG--ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADV   96 (162)
T ss_dssp             HHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCT
T ss_pred             HHHHHHhCCCCccccCccCccHHHHHHc-CcHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            3334444444444443333333344445 6778888888886  678888999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          220 TLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       220 ~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +.+|..|+||||+|+..|+.+++++|+++.
T Consensus        97 ~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  126 (162)
T 1ihb_A           97 NIEDNEGNLPLHLAAKEGHLRVVEFLVKHT  126 (162)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHcc
Confidence            999999999999999999999999999753

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.73  E-value=4.2e-17  Score=124.65  Aligned_cols=106  Identities=25%  Similarity=0.372  Sum_probs=85.9

Q ss_pred             hHHHHHHHhcCCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC
Q 025512          139 PSMSHMMESLTNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN  215 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~  215 (251)
                      ..+..+++.+.+++..+   ....+.++..   +..+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++
T Consensus        28 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~  102 (169)
T 2y1l_E           28 DEVRILMANGADVNAEDASGWTPLHLAAFN---GHLEIVEVLLKNG--ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKN  102 (169)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHCCCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            45555566666555443   3344444444   3467777788776  66888899999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          216 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       216 Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      |++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       103 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  136 (169)
T 2y1l_E          103 GADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNG  136 (169)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999863

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.72  E-value=5.4e-17  Score=122.12  Aligned_cols=107  Identities=20%  Similarity=0.296  Sum_probs=85.1

Q ss_pred             hHHHHHHHh-cCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCC
Q 025512          139 PSMSHMMES-LTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGA  217 (251)
Q Consensus       139 ~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Ga  217 (251)
                      ..+..+++. ..+++..+..+.+...+ ...+..+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|+
T Consensus        16 ~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~   92 (156)
T 1bd8_A           16 QEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQG--ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA   92 (156)
T ss_dssp             HHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCC
Confidence            344444444 11344444444444444 4456677888888876  6788899999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          218 AVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       218 d~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      +++.+|..|+||||+|+..|+.+++++|+++
T Consensus        93 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  123 (156)
T 1bd8_A           93 DVNVPDGTGALPIHLAVQEGHTAVVSFLAAE  123 (156)
T ss_dssp             CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT
T ss_pred             CCCCcCCCCCcHHHHHHHhChHHHHHHHHhc
Confidence            9999999999999999999999999999976

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.72  E-value=7.2e-17  Score=129.05  Aligned_cols=74  Identities=27%  Similarity=0.288  Sum_probs=38.4

Q ss_pred             HHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          172 PILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       172 ~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                      +++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|++
T Consensus       153 ~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~lL~~  226 (231)
T 3aji_A          153 KMVHILLFYK--ASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAKGGLGLILKRLAEG  226 (231)
T ss_dssp             HHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcC--CCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhhHHHHHHHHHcc
Confidence            3444444433  3344455555555555555555555555555555555555555555555555555555555544

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.72  E-value=1.4e-16  Score=134.66  Aligned_cols=93  Identities=22%  Similarity=0.216  Sum_probs=83.0

Q ss_pred             CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 025512          155 DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK  234 (251)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  234 (251)
                      +....+.++...+....+++++|+..+  .+++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+
T Consensus       211 ~~t~L~~A~~~~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~  288 (351)
T 3utm_A          211 HETALHCAVASLHPKRKQVAELLLRKG--ANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAA  288 (351)
T ss_dssp             CCCHHHHHHHCCSTTHHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHHhCccHHHHHHHHHHcC--CCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHH
Confidence            345556666666667788999999887  678889999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCC
Q 025512          235 LNSQHDVLKLLEKDA  249 (251)
Q Consensus       235 ~~g~~~iv~~Ll~~~  249 (251)
                      ..|+.++|++|+++.
T Consensus       289 ~~~~~~~v~~Ll~~g  303 (351)
T 3utm_A          289 LAGHLQTCRLLLSYG  303 (351)
T ss_dssp             HHTCHHHHHHHHHTT
T ss_pred             HcCcHHHHHHHHHcC
Confidence            999999999999863

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.72  E-value=1.3e-16  Score=126.80  Aligned_cols=110  Identities=19%  Similarity=0.253  Sum_probs=88.9

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      ..+..+++.+.+++..+..+.+...++......+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|++
T Consensus       106 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  183 (223)
T 2f8y_A          106 GMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNG--ANKDMQNNREETPLFLAAREGSYETAKVLLDHFAN  183 (223)
T ss_dssp             HHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            4667778888877765543333333333334567777778776  67888899999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCC
Q 025512          219 VTLQNMDGKTPIDVAKLNSQHDVLKLLEKDAF  250 (251)
Q Consensus       219 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~~  250 (251)
                      ++.+|..|+||||+|+..++.+|+++|+++..
T Consensus       184 ~~~~~~~g~t~l~~A~~~~~~~i~~~L~~~g~  215 (223)
T 2f8y_A          184 RDITDHMDRLPRDIAQERMHHDIVRLLDEYNL  215 (223)
T ss_dssp             TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             CccccccCCCHHHHHHHhcchHHHHHHHHcCC
Confidence            99999999999999999999999999998753

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.72  E-value=8.2e-18  Score=129.75  Aligned_cols=124  Identities=20%  Similarity=0.231  Sum_probs=94.3

Q ss_pred             cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCc---HHHHHHHHhcCCCcHHHHHHHHhcCC
Q 025512          106 FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQ---IEERMAKIKEDPSLKPILDEIESGGP  182 (251)
Q Consensus       106 ~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~L~~~~~  182 (251)
                      .+..|++.++.+...           +..    ..+..+++.+.+++..+.   ...+.++..   +..+++++|+..+ 
T Consensus        35 ~~~~g~t~L~~A~~~-----------~~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g-   95 (179)
T 3f6q_A           35 GDDHGFSPLHWACRE-----------GRS----AVVEMLIMRGARINVMNRGDDTPLHLAASH---GHRDIVQKLLQYK-   95 (179)
T ss_dssp             CCTTSCCHHHHHHHT-----------TCH----HHHHHHHHTTCCTTCCCTTCCCHHHHHHHT---TCHHHHHHHHHTT-
T ss_pred             cCCCCCCHHHHHHHc-----------CcH----HHHHHHHHcCCCCCCcCCCCCCHHHHHHHc---CCHHHHHHHHHcC-
Confidence            456666666666554           222    456666677777665543   344444444   4466777777776 


Q ss_pred             CccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          183 SAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       183 ~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                       .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++.
T Consensus        96 -~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g  161 (179)
T 3f6q_A           96 -ADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMG  161 (179)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTT
T ss_pred             -CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence             678888999999999999999999999999999999999999999999999999999999998764

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.72  E-value=4.1e-17  Score=123.99  Aligned_cols=90  Identities=22%  Similarity=0.290  Sum_probs=78.1

Q ss_pred             CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 025512          155 DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK  234 (251)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  234 (251)
                      +....+.++..++   .+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        42 g~t~L~~A~~~~~---~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~  116 (165)
T 3twr_A           42 QSTPLHFAAGYNR---VSVVEYLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAA  116 (165)
T ss_dssp             CCCHHHHHHHTTC---HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHH
T ss_pred             CCCHHHHHHHcCh---HHHHHHHHhcC--CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHH
Confidence            3455566555543   67777777776  678889999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCC
Q 025512          235 LNSQHDVLKLLEKDA  249 (251)
Q Consensus       235 ~~g~~~iv~~Ll~~~  249 (251)
                      ..|+.+++++|+++.
T Consensus       117 ~~~~~~~v~~Ll~~g  131 (165)
T 3twr_A          117 AKGKYEICKLLLQHG  131 (165)
T ss_dssp             HTTCHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHcC
Confidence            999999999999863

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.72  E-value=2.1e-18  Score=127.28  Aligned_cols=125  Identities=22%  Similarity=0.261  Sum_probs=86.7

Q ss_pred             ccchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCc---HHHHHHHHhcCCCcHHHHHHHHhcC
Q 025512          105 QFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQ---IEERMAKIKEDPSLKPILDEIESGG  181 (251)
Q Consensus       105 ~~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~L~~~~  181 (251)
                      ..+..|++.++.+...           +..    ..+..+++.+.+++..+.   ...+.++..   ...+++++|+..+
T Consensus         5 ~~~~~g~t~L~~A~~~-----------~~~----~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g   66 (137)
T 3c5r_A            5 FTNHRGETLLHIASIK-----------GDI----PSVEYLLQNGSDPNVKDHAGWTPLHEACNH---GHLKVVELLLQHK   66 (137)
T ss_dssp             CCCTTCCCHHHHHHHH-----------TCH----HHHHHHHHTTCCSCCCCTTSCCHHHHHHHT---TCHHHHHHHHHTT
T ss_pred             CcCCCCCCHHHHHHHc-----------CCH----HHHHHHHHcCCCCCcCCCCCCCHHHHHHHc---CCHHHHHHHHHcC
Confidence            3456667777666554           222    445556666666655443   344444443   4456666677765


Q ss_pred             CCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          182 PSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       182 ~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                        .+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|.++.
T Consensus        67 --~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~  132 (137)
T 3c5r_A           67 --ALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNE  132 (137)
T ss_dssp             --CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC----
T ss_pred             --CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccc
Confidence              567778888899999999999999999999999999988889999999988888888888777653

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.72  E-value=2.9e-17  Score=134.94  Aligned_cols=91  Identities=23%  Similarity=0.284  Sum_probs=76.8

Q ss_pred             cCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCC-CchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 025512          154 KDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDK-DNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV  232 (251)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~-G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~  232 (251)
                      .+....+.++..+   ..+++++|+..+  .+++..+.. |+||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus       157 ~g~t~L~~A~~~g---~~~~v~~Ll~~g--~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~  231 (282)
T 1oy3_D          157 DGHTPLHVAVIHK---DAEMVRLLRDAG--ADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGS  231 (282)
T ss_dssp             TSCCHHHHHHHTT---CHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCcCHHHHHHHcC---CHHHHHHHHHcC--CCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHHH
Confidence            3445555555544   466777777776  667777754 9999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCC
Q 025512          233 AKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       233 A~~~g~~~iv~~Ll~~~  249 (251)
                      |+..|+.+|+++|+++.
T Consensus       232 A~~~~~~~~v~~Ll~~g  248 (282)
T 1oy3_D          232 ALLRPNPILARLLRAHG  248 (282)
T ss_dssp             HHTSSCHHHHHHHHHTT
T ss_pred             HHHcCCcHHHHHHHHcC
Confidence            99999999999999864

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.72  E-value=6.8e-17  Score=126.47  Aligned_cols=106  Identities=24%  Similarity=0.284  Sum_probs=81.9

Q ss_pred             hHHHHHHHh-cCCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCC-----HHHH
Q 025512          139 PSMSHMMES-LTNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGR-----KECV  209 (251)
Q Consensus       139 ~~~~~ll~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~-----~~~v  209 (251)
                      ..+..+++. ..+++..+   ....+.++..+   ..+++++|+..+ ..+++.+|..|+||||+|+..+.     .+++
T Consensus        86 ~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v  161 (201)
T 3hra_A           86 EILAYMLKHATPDLNKHNRYGGNALIPAAEKG---HIDNVKLLLEDG-REDIDFQNDFGYTALIEAVGLREGNQLYQDIV  161 (201)
T ss_dssp             HHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTT---CHHHHHHHHHHC-CCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHH
T ss_pred             HHHHHHHhccCcccccccCCCCcHHHHHHHcC---CHHHHHHHHHcC-CCCcCCCCCCCCCHHHHHHHhccchhhHHHHH
Confidence            344455533 33444433   33445544443   456677777665 24678889999999999999998     9999


Q ss_pred             HHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          210 ALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       210 ~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ++|+++|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       162 ~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~  200 (201)
T 3hra_A          162 KLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY  200 (201)
T ss_dssp             HHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTC
T ss_pred             HHHHHCCCCCCccCCCCCCHHHHHHHcCCHhHHHHHHhc
Confidence            999999999999999999999999999999999999986

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.71  E-value=3.9e-17  Score=139.63  Aligned_cols=110  Identities=19%  Similarity=0.226  Sum_probs=88.6

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCC---ccccccCCCCchHHHHHHHcCCHHHHHHHHHC
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPS---AMMKYWNDKDNTALHYAAGYGRKECVALLLEN  215 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~---~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~  215 (251)
                      ..+..+++.+++++..+..+.+...++...+..+++++|+..+..   .+++..|..|+||||+|+..|+.++|++|+++
T Consensus       154 ~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~  233 (364)
T 3ljn_A          154 EMIKILVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEM  233 (364)
T ss_dssp             HHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHHTTTCHHHHHHHHTT
T ss_pred             HHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHHHHHHcCCHHHHHHHHHc
Confidence            567778888888877654444333333334456777777776521   22888899999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          216 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       216 Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      |++++.+|..|+||||+|+..|+.++|++|+++
T Consensus       234 gad~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~  266 (364)
T 3ljn_A          234 GIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK  266 (364)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTCCHHHHHHHHHH
T ss_pred             CCCCCCCCCCCCCHHHHHHHhChHHHHHHHHHc
Confidence            999999999999999999999999999999985

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.71  E-value=2.2e-17  Score=134.38  Aligned_cols=161  Identities=14%  Similarity=0.091  Sum_probs=111.8

Q ss_pred             hHHHHHHHHhcCchHHHHHHHHHhhhcCCCCCC----CCCccchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHH
Q 025512           69 SIKELAEQIAKDPAFNSMAEQLQKTLHGANAEE----SIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHM  144 (251)
Q Consensus        69 ~~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~----~~~~~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~l  144 (251)
                      ..+..|........+..+..++..+++......    .....+..|++.++.+...           +..    ..+..+
T Consensus        45 t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~-----------g~~----~~v~~L  109 (256)
T 2etb_A           45 TCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEK-----------RSL----QCVKLL  109 (256)
T ss_dssp             CHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHT-----------TCH----HHHHHH
T ss_pred             CHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHc-----------CCH----HHHHHH
Confidence            345555555112333444455566666211100    0011235677777776655           222    455666


Q ss_pred             HHhcCCCCcc----------------CcHHHHHHHHhcCCCcHHHHHHHHh---cCCCccccccCCCCchHHHHHHH--c
Q 025512          145 MESLTNPTKK----------------DQIEERMAKIKEDPSLKPILDEIES---GGPSAMMKYWNDKDNTALHYAAG--Y  203 (251)
Q Consensus       145 l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~l~~L~~---~~~~~~v~~~d~~G~TpLh~Aa~--~  203 (251)
                      ++.+++++..                +....+.++..   +..+++++|+.   .+  .+++.+|..|+||||+|+.  .
T Consensus       110 l~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~---~~~~~v~~Ll~~~~~g--a~~n~~d~~g~TpLh~A~~~~~  184 (256)
T 2etb_A          110 VENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACT---KQWDVVTYLLENPHQP--ASLEATDSLGNTVLHALVMIAD  184 (256)
T ss_dssp             HHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHT---TCHHHHHHHHHCSSCC--CCTTCCCTTSCCHHHHHHHHCC
T ss_pred             HHcCCCCCcccccccccccccccccCCCCHHHHHHHc---CCHHHHHHHHhccccC--CCcCccCCCCCCHHHHHHHccc
Confidence            6777776654                44555555554   44677777887   55  6789999999999999999  8


Q ss_pred             CCHH-------HHHHHHHCCCCC-------CCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          204 GRKE-------CVALLLENGAAV-------TLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       204 g~~~-------~v~~Ll~~Gad~-------~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ++.+       ++++|+++|+++       +.+|..|+||||+|+..|+.+++++|+++.
T Consensus       185 ~~~~~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~g  244 (256)
T 2etb_A          185 NSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQRE  244 (256)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCchhhHHHHHHHHHHHHcCCCcccccccccccCCCCCCHHHHHHHhCCHHHHHHHHhCC
Confidence            8888       999999999999       999999999999999999999999999863

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.71  E-value=1.2e-17  Score=134.42  Aligned_cols=125  Identities=16%  Similarity=0.178  Sum_probs=95.7

Q ss_pred             chhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccc
Q 025512          107 DTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMM  186 (251)
Q Consensus       107 ~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v  186 (251)
                      +..+.+.++.+...           +..    ..+..+++.+.+++..+..+.+...++...+..+++++|+..+  .++
T Consensus        18 ~~~~~t~L~~A~~~-----------g~~----~~v~~Ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g--a~~   80 (229)
T 2vge_A           18 RLNPLVLLLDAALT-----------GEL----EVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITAG--ANV   80 (229)
T ss_dssp             TSCHHHHHHHHHHH-----------TCH----HHHHHHHHHSSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCT
T ss_pred             ccchhHHHHHHHHc-----------CCH----HHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCC
Confidence            34455566665544           333    5666677777777665444433333333334567777888876  678


Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHH--HHcCCHHHHHHHHhC
Q 025512          187 KYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQN-MDGKTPIDVA--KLNSQHDVLKLLEKD  248 (251)
Q Consensus       187 ~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d-~~G~TpL~~A--~~~g~~~iv~~Ll~~  248 (251)
                      +.+|..|+||||+|+..|+.++|++|+++|++++.++ ..|+||||+|  +..|+.+++++|+++
T Consensus        81 n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~  145 (229)
T 2vge_A           81 NSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV  145 (229)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHH
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHc
Confidence            8899999999999999999999999999999999997 6999999999  999999999999874

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.71  E-value=1.2e-16  Score=127.88  Aligned_cols=140  Identities=18%  Similarity=0.188  Sum_probs=101.3

Q ss_pred             hHHHHHHHHHh-hhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCC--------
Q 025512           82 AFNSMAEQLQK-TLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNP--------  151 (251)
Q Consensus        82 ~f~~i~~~l~~-~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~--------  151 (251)
                      .+..+..++.. +.+        ++ .+..|++.++.+...+.           .    ..+..+++.+.+.        
T Consensus        15 ~~~~v~~Ll~~~g~~--------~~~~~~~g~t~L~~A~~~g~-----------~----~~v~~Ll~~~~~~~~~~~~~~   71 (232)
T 2rfa_A           15 DVQALSKLLKFEGCE--------VHQRGAMGETALHIAALYDN-----------L----EAAMVLMEAAPELVFEPMTSE   71 (232)
T ss_dssp             CHHHHHHHHTTTCSC--------TTCCCTTSCCHHHHHHHTTC-----------H----HHHHHHHHHCGGGGGCCCCST
T ss_pred             CHHHHHHHHHhcCCC--------cccCCCCCCCHHHHHHHcCC-----------H----HHHHHHHHcCchhcccccccc
Confidence            45555566655 555        44 56777788777766522           1    3444445544433        


Q ss_pred             CccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCC-------------CCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          152 TKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWND-------------KDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~-------------~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      +..+....+.++..+   ..+++++|+..+  .+++..+.             .|+||||+|+..|+.+++++|+++|++
T Consensus        72 ~~~g~t~L~~A~~~~---~~~~v~~Ll~~g--~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~  146 (232)
T 2rfa_A           72 LYEGQTALHIAVINQ---NVNLVRALLARG--ASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGAD  146 (232)
T ss_dssp             TTTTCCHHHHHHHTT---CHHHHHHHHHTT--CCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             CCCCcCHHHHHHHcC---CHHHHHHHHhCC--CCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            224455666666554   456777777776  44555544             799999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHH----HHHHhCC
Q 025512          219 VTLQNMDGKTPIDVAKLNSQHDVL----KLLEKDA  249 (251)
Q Consensus       219 ~~~~d~~G~TpL~~A~~~g~~~iv----~~Ll~~~  249 (251)
                      ++.+|..|+||||+|+..|+.+++    ++|+++.
T Consensus       147 ~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g  181 (232)
T 2rfa_A          147 IRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYD  181 (232)
T ss_dssp             TTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTT
T ss_pred             CCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcC
Confidence            999999999999999999999988    8888753

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.71  E-value=8e-18  Score=136.04  Aligned_cols=105  Identities=17%  Similarity=0.145  Sum_probs=80.3

Q ss_pred             hHHHHHHHhcCCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC
Q 025512          139 PSMSHMMESLTNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN  215 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~  215 (251)
                      ..+..+++.+.+++..+   ....+.++..++   .+++++|+..+  .+++.+|..|+||||+|+..|+.++|++|+++
T Consensus        51 ~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~g--a~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~  125 (239)
T 1ycs_B           51 DLVQRIIYEVDDPSLPNDEGITALHNAVCAGH---TEIVKFLVQFG--VNVNAADSDGWTPLHCAASCNNVQVCKFLVES  125 (239)
T ss_dssp             HHHHHHTSTTSSCCCCCTTSCCHHHHHHHHTC---HHHHHHHHHHT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCC---HHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            34555555565555444   445555555544   56666677765  67888899999999999999999999999999


Q ss_pred             CCCCCCCCCCCC-cHHHHH--HHcCCHHHHHHHHhC
Q 025512          216 GAAVTLQNMDGK-TPIDVA--KLNSQHDVLKLLEKD  248 (251)
Q Consensus       216 Gad~~~~d~~G~-TpL~~A--~~~g~~~iv~~Ll~~  248 (251)
                      |++++.++..|. ||||+|  +..|+.+|+++|+++
T Consensus       126 ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~  161 (239)
T 1ycs_B          126 GAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  161 (239)
T ss_dssp             TCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHh
Confidence            999999997777 999999  778899999999864

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.70  E-value=1e-16  Score=122.08  Aligned_cols=106  Identities=19%  Similarity=0.207  Sum_probs=85.6

Q ss_pred             hHHHHHHHhcCCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC
Q 025512          139 PSMSHMMESLTNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN  215 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~  215 (251)
                      ..+..+++.+.+++..+   ....+.++..   +..+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++
T Consensus        17 ~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~   91 (167)
T 3v31_A           17 LYLATRIEQENVINHTDEEGFTPLMWAAAH---GQIAVVEFLLQNG--ADPQLLGKGRESALSLACSKGYTDIVKMLLDC   91 (167)
T ss_dssp             HHHHHHHHHSSCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCcCCCCCCCCCHHHHHHHC---CCHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHC
Confidence            45555555555554443   3444555544   3467777788776  66788899999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          216 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       216 Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      |++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus        92 g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  125 (167)
T 3v31_A           92 GVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESG  125 (167)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            9999999999999999999999999999999863

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.70  E-value=6.2e-17  Score=117.17  Aligned_cols=76  Identities=24%  Similarity=0.293  Sum_probs=55.0

Q ss_pred             HHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          171 KPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       171 ~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      .+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus        20 ~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~   95 (123)
T 3aaa_C           20 LDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK   95 (123)
T ss_dssp             HHHHHHHHHTT--CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHHcC--CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            44555555554  45666777777777777777777777777777777777777777777777777777777777765

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.70  E-value=1.2e-16  Score=123.14  Aligned_cols=90  Identities=24%  Similarity=0.272  Sum_probs=77.5

Q ss_pred             CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 025512          155 DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK  234 (251)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  234 (251)
                      +....+.++..+   ..+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+
T Consensus        39 g~t~L~~A~~~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~  113 (179)
T 3f6q_A           39 GFSPLHWACREG---RSAVVEMLIMRG--ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYAC  113 (179)
T ss_dssp             SCCHHHHHHHTT---CHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHcC---cHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHH
Confidence            344555555443   457777777776  678889999999999999999999999999999999999999999999999


Q ss_pred             HcCCHHHHHHHHhCC
Q 025512          235 LNSQHDVLKLLEKDA  249 (251)
Q Consensus       235 ~~g~~~iv~~Ll~~~  249 (251)
                      ..|+.+++++|+++.
T Consensus       114 ~~~~~~~v~~Ll~~g  128 (179)
T 3f6q_A          114 FWGQDQVAEDLVANG  128 (179)
T ss_dssp             HTTCHHHHHHHHHTT
T ss_pred             HcCCHHHHHHHHHCC
Confidence            999999999999864

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.70  E-value=8.9e-17  Score=120.73  Aligned_cols=106  Identities=23%  Similarity=0.207  Sum_probs=85.2

Q ss_pred             hHHHHHHHhcCCCC--ccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCC
Q 025512          139 PSMSHMMESLTNPT--KKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENG  216 (251)
Q Consensus       139 ~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~G  216 (251)
                      ..+..+++.+.+.+  ..+....+.++..++   .+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++|
T Consensus        16 ~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g   90 (153)
T 1awc_B           16 DEVRILMANGAPFTTDWLGTSPLHLAAQYGH---FSTTEVLLRAG--VSRDARTKVDRTPLHMAASEGHANIVEVLLKHG   90 (153)
T ss_dssp             HHHHHHHHHTCCCCCCTTCCCHHHHHHHHTC---HHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCCCCcCCCCCCHHHHHHHcCC---HHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcC
Confidence            34444555544332  234455666665543   56777778776  567888999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          217 AAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       217 ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus        91 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  123 (153)
T 1awc_B           91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYG  123 (153)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999999999999999999863

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.70  E-value=5.9e-17  Score=133.16  Aligned_cols=159  Identities=14%  Similarity=0.085  Sum_probs=110.0

Q ss_pred             HHHHHHHHhcCchHHHHHHHHHhhhcCCC----CCCCCCccchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHH
Q 025512           70 IKELAEQIAKDPAFNSMAEQLQKTLHGAN----AEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMM  145 (251)
Q Consensus        70 ~~~la~~i~~n~~f~~i~~~l~~~~~~~~----~~~~~~~~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll  145 (251)
                      .+.+|........+..+..++..+++...    -.......+..|++.++.+...           +..    ..+..++
T Consensus        57 pL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~-----------g~~----~~v~~Ll  121 (273)
T 2pnn_A           57 CLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIER-----------RNM----TLVTLLV  121 (273)
T ss_dssp             HHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHT-----------TCH----HHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHc-----------CCH----HHHHHHH
Confidence            45555544223445555566666654100    0001111344666776666554           222    4555666


Q ss_pred             HhcCCCCcc-----------------CcHHHHHHHHhcCCCcHHHHHHHHh---cCCCccccccCCCCchHHHHHHHcCC
Q 025512          146 ESLTNPTKK-----------------DQIEERMAKIKEDPSLKPILDEIES---GGPSAMMKYWNDKDNTALHYAAGYGR  205 (251)
Q Consensus       146 ~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~l~~L~~---~~~~~~v~~~d~~G~TpLh~Aa~~g~  205 (251)
                      +.+++++..                 +....+.++..+   ..+++++|+.   .+  .+++.+|..|+||||+|+..|+
T Consensus       122 ~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g---~~~~v~~Ll~~~~~g--ad~~~~d~~g~tpLh~A~~~~~  196 (273)
T 2pnn_A          122 ENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTN---QLAIVKFLLQNSWQP--ADISARDSVGNTVLHALVEVAD  196 (273)
T ss_dssp             HTTCCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTT---CHHHHHHHHHCSSCC--CCTTCCCTTSCCHHHHHHHHCC
T ss_pred             HCCCCcCccccccccccccccccccCCCCHHHHHHHcC---CHHHHHHHHhcccCC--CCceeeCCCCCcHHHHHHHccC
Confidence            666666554                 345555555544   5677777787   55  7789999999999999999998


Q ss_pred             ---------HHHHHHHHHCCCCCC-------CCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          206 ---------KECVALLLENGAAVT-------LQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       206 ---------~~~v~~Ll~~Gad~~-------~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                               .+++++|+++|++++       .+|..|+||||+|+..|+.+||++|+++
T Consensus       197 ~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~  255 (273)
T 2pnn_A          197 NTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQR  255 (273)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHHHHHC
Confidence                     899999999999997       5899999999999999999999999975

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.70  E-value=2.9e-17  Score=132.73  Aligned_cols=78  Identities=28%  Similarity=0.269  Sum_probs=71.6

Q ss_pred             cHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          170 LKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       170 ~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ..+++++|+..+  .+++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++.
T Consensus        49 ~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  126 (239)
T 1ycs_B           49 EFDLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESG  126 (239)
T ss_dssp             CHHHHHHHTSTT--SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            456777777776  578999999999999999999999999999999999999999999999999999999999999863

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.70  E-value=1.7e-16  Score=127.48  Aligned_cols=105  Identities=17%  Similarity=0.203  Sum_probs=74.9

Q ss_pred             hHHHHHHHhcC----CCCcc---CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccC-CCCchHHHHHHHcCCHHHHH
Q 025512          139 PSMSHMMESLT----NPTKK---DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWN-DKDNTALHYAAGYGRKECVA  210 (251)
Q Consensus       139 ~~~~~ll~~~~----~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d-~~G~TpLh~Aa~~g~~~~v~  210 (251)
                      ..+..+++.+.    +.+..   +....+.++..+   ..+++++|+..+  .+++..+ ..|+||||+|+..|+.++++
T Consensus        93 ~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~~~~Ll~~g--~~~~~~~~~~g~t~L~~A~~~~~~~~v~  167 (241)
T 1k1a_A           93 TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTE---CQETVQLLLERG--ADIDAVDIKSGRSPLIHAVENNSLSMVQ  167 (241)
T ss_dssp             HHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHT---CHHHHHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHcCCCccccccccCcCCCcHHHHHHHcC---CHHHHHHHHHcC--CCcccccccCCCcHHHHHHHcCCHHHHH
Confidence            34555566554    33332   334445444443   356666666665  4566666 67888888888888888888


Q ss_pred             HHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          211 LLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       211 ~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      +|+++|++++.+|..|+||||+|+..|+.+++++|+++
T Consensus       168 ~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~  205 (241)
T 1k1a_A          168 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS  205 (241)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            88888888888888888888888888888888888875

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.70  E-value=4.1e-17  Score=132.98  Aligned_cols=123  Identities=15%  Similarity=0.157  Sum_probs=96.7

Q ss_pred             chhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCcc-----------------CcHHHHHHHHhcCCC
Q 025512          107 DTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKK-----------------DQIEERMAKIKEDPS  169 (251)
Q Consensus       107 ~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~-----------------~~~~~~~~~~~~~~~  169 (251)
                      +..|.+.++.+...           +..    ..+..+++.+++++..                 +....+.++..+   
T Consensus        90 d~~g~t~L~~A~~~-----------g~~----~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g---  151 (260)
T 3jxi_A           90 YYRGQTALHIAIER-----------RCK----HYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTN---  151 (260)
T ss_dssp             SEESBCHHHHHHHT-----------TCH----HHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTT---
T ss_pred             ccCCCCHHHHHHHc-----------CCH----HHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcC---
Confidence            34677777766654           222    4566667777776654                 345555555544   


Q ss_pred             cHHHHHHHHh---cCCCccccccCCCCchHHHHHHHcCC---------HHHHHHHHHCCCCC-------CCCCCCCCcHH
Q 025512          170 LKPILDEIES---GGPSAMMKYWNDKDNTALHYAAGYGR---------KECVALLLENGAAV-------TLQNMDGKTPI  230 (251)
Q Consensus       170 ~~~~l~~L~~---~~~~~~v~~~d~~G~TpLh~Aa~~g~---------~~~v~~Ll~~Gad~-------~~~d~~G~TpL  230 (251)
                      ..+++++|+.   .+  .+++.+|..|+||||+|+..|+         .+++++|+++|+++       +.+|..|+|||
T Consensus       152 ~~~~v~~Ll~~~~~g--a~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL  229 (260)
T 3jxi_A          152 QPHIVHYLTENGHKQ--ADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPL  229 (260)
T ss_dssp             CHHHHHHHHHCSSCC--CCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHH
T ss_pred             CHHHHHHHHhccccC--CCCcccCCCCCcHHHHHHHhccCchhHHHHHHHHHHHHHHhCcccccccchhhcccCCCCCHH
Confidence            4677777888   54  7789999999999999999888         79999999999999       78999999999


Q ss_pred             HHHHHcCCHHHHHHHHhCC
Q 025512          231 DVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       231 ~~A~~~g~~~iv~~Ll~~~  249 (251)
                      |+|+..|+.++|++|+++.
T Consensus       230 ~~A~~~g~~~~v~~Ll~~g  248 (260)
T 3jxi_A          230 MMAAKTGKIGIFQHIIRRE  248 (260)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHhC
Confidence            9999999999999999863

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.70  E-value=2.2e-17  Score=134.36  Aligned_cols=137  Identities=15%  Similarity=0.206  Sum_probs=102.1

Q ss_pred             hhchHHHHHHHHcCCcchHHHHHhhhhcc------CC-hHHHHHHHhcC-CCCc---cCcHHHHHHHHhcCCCcHHHHHH
Q 025512          108 TTQYYSTMQQVMQNPQFMTMAERLGNALM------QD-PSMSHMMESLT-NPTK---KDQIEERMAKIKEDPSLKPILDE  176 (251)
Q Consensus       108 ~~g~~~l~~~l~~~~~~~~~a~~~~~~ll------~~-~~~~~ll~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~l~~  176 (251)
                      ..|+.++++.|++.++.+...+..+...+      .. ..+..+++.+. +.+.   .+....+.++..++..+++   +
T Consensus        66 ~~g~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~---~  142 (253)
T 1yyh_A           66 RYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLE---D  142 (253)
T ss_dssp             HTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSCTTCCCTTCCCHHHHHHHHTCSSHHH---H
T ss_pred             HcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCCcHHHHHHHcChHHHHH---H
Confidence            45677788888887765544333332211      11 35555666654 4433   4556667777766655444   4


Q ss_pred             HHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          177 IESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       177 L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      |+..+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       143 Ll~~g--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  213 (253)
T 1yyh_A          143 LINSH--ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHF  213 (253)
T ss_dssp             HHHTT--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            55555  678889999999999999999999999999999999999999999999999999999999999863

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.69  E-value=9.1e-17  Score=114.24  Aligned_cols=86  Identities=30%  Similarity=0.301  Sum_probs=73.1

Q ss_pred             cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 025512          156 QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL  235 (251)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  235 (251)
                      ....+.++..+   ..+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+.
T Consensus        25 ~t~L~~A~~~g---~~~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~   99 (110)
T 2zgd_A           25 GKKLLEAARAG---QDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISID   99 (110)
T ss_dssp             HHHHHHHHHHT---CHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             chHHHHHHHcC---CHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcHHHHHHH
Confidence            33344444443   456677777776  6788899999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHH
Q 025512          236 NSQHDVLKLLE  246 (251)
Q Consensus       236 ~g~~~iv~~Ll  246 (251)
                      .|+.+++++|.
T Consensus       100 ~~~~~~~~~L~  110 (110)
T 2zgd_A          100 NGNEDLAEILQ  110 (110)
T ss_dssp             HTCHHHHHHHC
T ss_pred             cCCHHHHHHhC
Confidence            99999999883

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.69  E-value=2.1e-16  Score=123.62  Aligned_cols=143  Identities=22%  Similarity=0.165  Sum_probs=107.0

Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCc--
Q 025512           80 DPAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQ--  156 (251)
Q Consensus        80 n~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~--  156 (251)
                      ...+..+.+++..+...       ++ .+..|++.++.+...           +..    ..+..+++.+.+++..+.  
T Consensus        15 ~g~~~~v~~ll~~~~~~-------~~~~~~~g~t~L~~A~~~-----------~~~----~~v~~Ll~~g~~~~~~~~~g   72 (201)
T 3hra_A           15 QRDTKKVKEILQDTTYQ-------VDEVDTEGNTPLNIAVHN-----------NDI----EIAKALIDRGADINLQNSIS   72 (201)
T ss_dssp             TTCHHHHHHHHTCTTCC-------TTCCCTTSCCHHHHHHHH-----------TCH----HHHHHHHHTTCCTTCCCTTS
T ss_pred             hccHHHHHHHHHcCCCC-------CCCCCCCCCCHHHHHHHc-----------CCH----HHHHHHHHcCCCCCCCCCCC
Confidence            33466666666554411       33 566777777777655           222    566667777777766544  


Q ss_pred             -HHHHHHHHhcCCCcHHHHHHHH-hcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHH
Q 025512          157 -IEERMAKIKEDPSLKPILDEIE-SGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENG-AAVTLQNMDGKTPIDVA  233 (251)
Q Consensus       157 -~~~~~~~~~~~~~~~~~l~~L~-~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A  233 (251)
                       ...+.++..   +..+++++|+ .++  .+++..|..|+||||+|+..|+.+++++|+++| ++++.+|..|+||||+|
T Consensus        73 ~t~l~~A~~~---~~~~~~~~Ll~~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A  147 (201)
T 3hra_A           73 DSPYLYAGAQ---GRTEILAYMLKHAT--PDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEA  147 (201)
T ss_dssp             CCHHHHHHHT---TCHHHHHHHHHHSC--CCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHH
T ss_pred             CCHHHHHHHc---CCHHHHHHHHhccC--cccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHH
Confidence             444444443   4466777777 544  567888999999999999999999999999999 99999999999999999


Q ss_pred             HHcCC-----HHHHHHHHhCC
Q 025512          234 KLNSQ-----HDVLKLLEKDA  249 (251)
Q Consensus       234 ~~~g~-----~~iv~~Ll~~~  249 (251)
                      +..+.     .+++++|+++.
T Consensus       148 ~~~~~~~~~~~~~v~~Ll~~g  168 (201)
T 3hra_A          148 VGLREGNQLYQDIVKLLMENG  168 (201)
T ss_dssp             HHSSCCSHHHHHHHHHHHHTT
T ss_pred             HHhccchhhHHHHHHHHHHCC
Confidence            99998     99999999863

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.69  E-value=1.8e-16  Score=131.55  Aligned_cols=177  Identities=15%  Similarity=0.144  Sum_probs=109.4

Q ss_pred             hhHHHHHHHHhcCchHHHHHHHHHhhhcCCC-CCCCCCc---cchhchHHHHHHHHcCCcchHHHHHhhhhcc-------
Q 025512           68 PSIKELAEQIAKDPAFNSMAEQLQKTLHGAN-AEESIPQ---FDTTQYYSTMQQVMQNPQFMTMAERLGNALM-------  136 (251)
Q Consensus        68 p~~~~la~~i~~n~~f~~i~~~l~~~~~~~~-~~~~~~~---~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll-------  136 (251)
                      ...+..|...+   .+..+..++..+++... +..+...   ....|+.++++.|++.++.++..+..+...+       
T Consensus        41 ~t~l~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~g  117 (299)
T 1s70_B           41 GAVFLAACSSG---DTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (299)
T ss_dssp             HHHHHHHHHHT---CHHHHHHHHHHCCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             ccHHHHHHHcC---CHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Confidence            34455555554   46667777777776211 1111111   1234566667777776665443322222111       


Q ss_pred             CChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHH---------------------------hcCCCcccccc
Q 025512          137 QDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIE---------------------------SGGPSAMMKYW  189 (251)
Q Consensus       137 ~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~---------------------------~~~~~~~v~~~  189 (251)
                      +...+..+++.+.+++..+..+.+...++.......++..++                           .+.  ......
T Consensus       118 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~  195 (299)
T 1s70_B          118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGH--INDVRH  195 (299)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTC--CCCCCC
T ss_pred             CHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccC--cchhhh
Confidence            114566667777776655443333333332222233332222                           221  122234


Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       190 d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~g  255 (299)
T 1s70_B          196 AKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENL  255 (299)
T ss_dssp             TTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             cCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcC
Confidence            678999999999999999999999999999999999999999999999999999999863

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.69  E-value=1.4e-16  Score=127.52  Aligned_cols=154  Identities=14%  Similarity=0.095  Sum_probs=106.2

Q ss_pred             HHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCccchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcC
Q 025512           70 IKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLT  149 (251)
Q Consensus        70 ~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~  149 (251)
                      .+.+|...+   .+..+..++..+.+...  ......+..|++.++.+....           ..    ..+..+++.+.
T Consensus        40 ~L~~A~~~g---~~~~v~~Ll~~~~~~~~--~~~~~~~~~g~t~L~~A~~~~-----------~~----~~v~~Ll~~g~   99 (232)
T 2rfa_A           40 ALHIAALYD---NLEAAMVLMEAAPELVF--EPMTSELYEGQTALHIAVINQ-----------NV----NLVRALLARGA   99 (232)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHCGGGGG--CCCCSTTTTTCCHHHHHHHTT-----------CH----HHHHHHHHTTC
T ss_pred             HHHHHHHcC---CHHHHHHHHHcCchhcc--ccccccCCCCcCHHHHHHHcC-----------CH----HHHHHHHhCCC
Confidence            344554443   34555556666655100  000113445666666555441           11    34444555555


Q ss_pred             CCCc----------------cCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHH----
Q 025512          150 NPTK----------------KDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECV----  209 (251)
Q Consensus       150 ~~~~----------------~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v----  209 (251)
                      +++.                .+....+.++..++   .+++++|+..|  .+++.+|..|+||||+|+..|+.+++    
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~---~~~v~~Ll~~g--a~~~~~d~~g~t~L~~A~~~~~~~~~~~i~  174 (232)
T 2rfa_A          100 SVSARATGSVFHYRPHNLIYYGEHPLSFAACVGS---EEIVRLLIEHG--ADIRAQDSLGNTVLHILILQPNKTFACQMY  174 (232)
T ss_dssp             CTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTC---HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHTCSCHHHHHHHH
T ss_pred             CCCcccCCcceeecccccccCCCCHHHHHHHcCC---HHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCChHHHHHHH
Confidence            5444                35566666666554   56677777776  67899999999999999999999988    


Q ss_pred             HHHHHCCCCC------CCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          210 ALLLENGAAV------TLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       210 ~~Ll~~Gad~------~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ++|+++|+++      +.+|..|+||||+|+..|+.+++++|+++
T Consensus       175 ~~Ll~~g~~~~~~~~~~~~~~~g~tpl~~A~~~g~~~~v~~Ll~~  219 (232)
T 2rfa_A          175 NLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQK  219 (232)
T ss_dssp             HHHHHTTCSCSSCCGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHhcCCchhhhhhhccCCCCCCCHHHHHHHcCCHHHHHHHHhc
Confidence            9999999998      58999999999999999999999999985

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.69  E-value=4.7e-17  Score=119.98  Aligned_cols=93  Identities=26%  Similarity=0.318  Sum_probs=79.5

Q ss_pred             CccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Q 025512          152 TKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPID  231 (251)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~  231 (251)
                      +..+....+.++..++   .+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus         7 ~~~g~t~L~~A~~~~~---~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~   81 (137)
T 3c5r_A            7 NHRGETLLHIASIKGD---IPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLH   81 (137)
T ss_dssp             CTTCCCHHHHHHHHTC---HHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred             CCCCCCHHHHHHHcCC---HHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHH
Confidence            3445566666666654   56666777765  678889999999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhCC
Q 025512          232 VAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       232 ~A~~~g~~~iv~~Ll~~~  249 (251)
                      +|+..|+.+++++|+++.
T Consensus        82 ~A~~~~~~~~v~~Ll~~g   99 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYG   99 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHcC
Confidence            999999999999999863

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.69  E-value=6.6e-17  Score=129.29  Aligned_cols=150  Identities=19%  Similarity=0.151  Sum_probs=113.7

Q ss_pred             hHHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHh
Q 025512           69 SIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMES  147 (251)
Q Consensus        69 ~~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~  147 (251)
                      ..+..|...+   .+..+..+++.+.+        ++ .+..|++.++.+...+           ..    ..+..+++.
T Consensus        42 t~L~~A~~~g---~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~~-----------~~----~~v~~Ll~~   95 (231)
T 3aji_A           42 TALHWACSAG---HTEIVEFLLQLGVP--------VNDKDDAGWSPLHIAASAG-----------XD----EIVKALLVK   95 (231)
T ss_dssp             CHHHHHHHHT---CHHHHHHHHHTTCC--------SCCCCTTSCCHHHHHHHHT-----------CH----HHHHHHHHT
T ss_pred             CHHHHHHHcC---cHHHHHHHHHhCCC--------CCCcCCCCCCHHHHHHHcC-----------HH----HHHHHHHHc
Confidence            3455665555   35555566677766        44 6677888888776652           22    455566666


Q ss_pred             cCCCCccCc---HHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 025512          148 LTNPTKKDQ---IEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNM  224 (251)
Q Consensus       148 ~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~  224 (251)
                      +.+++..+.   ...+.++..   +..+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus        96 g~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~  170 (231)
T 3aji_A           96 GAHVNAVNQNGCTPLHYAASK---NRHEIAVMLLEGG--ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDT  170 (231)
T ss_dssp             TCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCT
T ss_pred             CCCCCCCCCCCCCHHHHHHHc---CCHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCC
Confidence            666655443   444554444   4466777777776  56788899999999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          225 DGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       225 ~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .|+||||+|+..|+.+++++|+++.
T Consensus       171 ~g~t~L~~A~~~~~~~~v~~Ll~~g  195 (231)
T 3aji_A          171 EGNTPLHLACDEERVEEAKFLVTQG  195 (231)
T ss_dssp             TSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHCC
Confidence            9999999999999999999999863

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.69  E-value=6.4e-17  Score=126.05  Aligned_cols=128  Identities=9%  Similarity=0.016  Sum_probs=100.2

Q ss_pred             hhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccC---cHHHHHHHHhcCCCc---HHHHHHHHhcC
Q 025512          108 TTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKD---QIEERMAKIKEDPSL---KPILDEIESGG  181 (251)
Q Consensus       108 ~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~---~~~l~~L~~~~  181 (251)
                      ..|.+.++.++..+..       ....    ..+..+++.+++++..+   ..+.+.++.......   .+++++|+..|
T Consensus        36 ~~g~T~Lh~A~~~~~~-------~~~~----~iv~~Ll~~Gadvn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~G  104 (186)
T 3t8k_A           36 VLKSNILYDVLRNNND-------EARY----KISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKG  104 (186)
T ss_dssp             HHTTTHHHHHTTCSCH-------HHHH----HHHHHHHHTTCCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHcCCc-------chHH----HHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCC
Confidence            5678888877665211       0011    35666788888887754   445666666665554   57888888887


Q ss_pred             CCccccccCCCCc-hHHHHHHHcC-----CHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          182 PSAMMKYWNDKDN-TALHYAAGYG-----RKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       182 ~~~~v~~~d~~G~-TpLh~Aa~~g-----~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                        +++|.+|..|+ ||||+|+..+     +.+++++|++ +|+|++.+|..|+||||+|+..|+.++|++|+++
T Consensus       105 --adin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~  176 (186)
T 3t8k_A          105 --ADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY  176 (186)
T ss_dssp             --CCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHH
T ss_pred             --CCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHH
Confidence              78999999999 9999999954     4579999999 9999999999999999999999999999999864

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.69  E-value=3.8e-16  Score=128.23  Aligned_cols=157  Identities=17%  Similarity=0.088  Sum_probs=106.4

Q ss_pred             HHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhc
Q 025512           70 IKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESL  148 (251)
Q Consensus        70 ~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~  148 (251)
                      .+..|...+   .+..+..++..+.+.     ...+ .+..|++.++.+...           +..    ..+..+++.+
T Consensus        12 ~L~~A~~~g---~~~~v~~Ll~~g~~~-----~~~~~~~~~g~t~L~~A~~~-----------g~~----~~v~~Ll~~g   68 (282)
T 1oy3_D           12 ALHLAVIHQ---HEPFLDFLLGFSAGH-----EYLDLQNDLGQTALHLAAIL-----------GEA----STVEKLYAAG   68 (282)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHTTS-----GGGGCCCTTSCCHHHHHHHH-----------TCH----HHHHHHHHTT
T ss_pred             HHHHHHHcC---CHHHHHHHHhcCCCc-----ccccccCCCCCCHHHHHHHc-----------CCH----HHHHHHHHcC
Confidence            345554444   344555566666541     0011 345566666665544           222    4555566666


Q ss_pred             CCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCC---------------------------------------------
Q 025512          149 TNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPS---------------------------------------------  183 (251)
Q Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~---------------------------------------------  183 (251)
                      ++++..+..+.+...++......+++++|+..+..                                             
T Consensus        69 a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  148 (282)
T 1oy3_D           69 AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWR  148 (282)
T ss_dssp             CCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-----------------------------------CCCGG
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhcccccCcchhcchhhhccccccchhhhhhhhhhh
Confidence            66665544444444444444555666666654421                                             


Q ss_pred             ccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMD-GKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       184 ~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~-G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .+++..|..|+||||+|+..|+.++|++|+++|++++.++.. |+||||+|+..|+.++|++|+++.
T Consensus       149 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  215 (282)
T 1oy3_D          149 LQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAG  215 (282)
T ss_dssp             GGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcC
Confidence            346778899999999999999999999999999999999854 999999999999999999999863

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.68  E-value=1.4e-16  Score=139.36  Aligned_cols=73  Identities=29%  Similarity=0.332  Sum_probs=42.1

Q ss_pred             HHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 025512          172 PILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE  246 (251)
Q Consensus       172 ~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  246 (251)
                      +++++|+..+  .+++.+|..|+||||+|+..|+.++|++|+++|++++.+|..|+|||++|++.|+.+++++|.
T Consensus       325 ~~v~~Ll~~g--ad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~~A~~~g~~~~~~~l~  397 (437)
T 1n11_A          325 KLVKFLLQHQ--ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLK  397 (437)
T ss_dssp             HHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHhcC--CCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCcHHHHHHHH
Confidence            3444444443  445555555666666666666666666666666666666666666666666666666655554

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.68  E-value=1.5e-16  Score=121.62  Aligned_cols=91  Identities=19%  Similarity=0.145  Sum_probs=77.8

Q ss_pred             cCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 025512          154 KDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA  233 (251)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  233 (251)
                      .+....+.++..+   ..+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        35 ~g~t~L~~A~~~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A  109 (172)
T 3v30_A           35 RGFTPLIWASAFG---EIETVRFLLEWG--ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYA  109 (172)
T ss_dssp             TSCCHHHHHHHTT---CHHHHHHHHHHT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             CCCCHHHHHHHcC---CHHHHHHHHHcC--CCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHH
Confidence            3445555555554   356777777776  66888899999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCC
Q 025512          234 KLNSQHDVLKLLEKDA  249 (251)
Q Consensus       234 ~~~g~~~iv~~Ll~~~  249 (251)
                      +..|+.+++++|+++.
T Consensus       110 ~~~~~~~~v~~Ll~~g  125 (172)
T 3v30_A          110 VRGNHVKCVEALLARG  125 (172)
T ss_dssp             HHTTCHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHcC
Confidence            9999999999999863

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.68  E-value=5e-16  Score=123.76  Aligned_cols=160  Identities=17%  Similarity=0.086  Sum_probs=106.4

Q ss_pred             hHHHHHHHHHhhhcCCC--CCCCCCc---cchhchHHHHHHHHcCC--cchHH-HHHhhhhc-------cCChHHHHHHH
Q 025512           82 AFNSMAEQLQKTLHGAN--AEESIPQ---FDTTQYYSTMQQVMQNP--QFMTM-AERLGNAL-------MQDPSMSHMME  146 (251)
Q Consensus        82 ~f~~i~~~l~~~~~~~~--~~~~~~~---~~~~g~~~l~~~l~~~~--~~~~~-a~~~~~~l-------l~~~~~~~ll~  146 (251)
                      .+..+..++..+.....  +..+...   ....++.++++.|++.+  ..+.. .+..+...       .+...+..+++
T Consensus        14 ~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~   93 (228)
T 2dzn_A           14 EFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYD   93 (228)
T ss_dssp             CHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHS
T ss_pred             CHHHHHHHHhcCccccccCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            35556666666654221  1111111   22456677777777766  22221 11111111       01145666676


Q ss_pred             hc--CCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCC-CCCC
Q 025512          147 SL--TNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENG-AAVT  220 (251)
Q Consensus       147 ~~--~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~G-ad~~  220 (251)
                      .+  .+++..+   ....+.++.   .+..+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++| ++++
T Consensus        94 ~g~~~~~~~~~~~g~t~L~~A~~---~~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~  168 (228)
T 2dzn_A           94 RPLKPDLNKITNQGVTCLHLAVG---KKWFEVSQFLIENG--ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVN  168 (228)
T ss_dssp             SSSCCCTTCCCTTCCCHHHHHHH---TTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSC
T ss_pred             CCCCcccccCCcCCCCHHHHHHH---cCCHhHHHHHHHcC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCccccc
Confidence            66  5555443   344444443   34567777777776  678888999999999999999999999999999 9999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHH
Q 025512          221 LQNMDGKTPIDVAKLNSQHDVLKLLE  246 (251)
Q Consensus       221 ~~d~~G~TpL~~A~~~g~~~iv~~Ll  246 (251)
                      .+|..|+||||+|+..|+.+++++|+
T Consensus       169 ~~d~~g~t~L~~A~~~~~~~~v~~Ll  194 (228)
T 2dzn_A          169 WQDKQGWTPLFHALAEGHGDAAVLLV  194 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            99999999999999999999999998

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.68  E-value=3.1e-16  Score=124.99  Aligned_cols=137  Identities=15%  Similarity=0.168  Sum_probs=98.4

Q ss_pred             hhchHHHHHHHHcCC--cchHHHHHhhhhc-------cCChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHH
Q 025512          108 TTQYYSTMQQVMQNP--QFMTMAERLGNAL-------MQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIE  178 (251)
Q Consensus       108 ~~g~~~l~~~l~~~~--~~~~~a~~~~~~l-------l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~  178 (251)
                      ..++.++++.|++.+  ..+...+..+...       .....+..+++.+.+++..+..+.+...++...+..+++++|+
T Consensus        81 ~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll  160 (228)
T 2dzn_A           81 SVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLC  160 (228)
T ss_dssp             HHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            456677777787765  4333222222111       1114677778888888776554443333333344567788888


Q ss_pred             hcCCCccccccCCCCchHHHHHHHcCCHHHHHHHH-HCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          179 SGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLL-ENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       179 ~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll-~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ..+ ..+++..|..|+||||+|+..|+.+++++|+ ++|++++.+|..|+||||+|+..   +++++|+++
T Consensus       161 ~~g-~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~~A~~~---~~~~~l~~~  227 (228)
T 2dzn_A          161 GLG-KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNN  227 (228)
T ss_dssp             TTT-CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGGGCSST---THHHHHHTT
T ss_pred             hcC-cccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHHHHHHH---HHHHHHHhc
Confidence            776 2567888999999999999999999999999 88999999999999999999764   678888765

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.68  E-value=1.5e-16  Score=131.43  Aligned_cols=107  Identities=21%  Similarity=0.226  Sum_probs=86.0

Q ss_pred             hHHHHHHHhcC-CCCccCcHH---HHHHHHhc--CCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHH
Q 025512          139 PSMSHMMESLT-NPTKKDQIE---ERMAKIKE--DPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALL  212 (251)
Q Consensus       139 ~~~~~ll~~~~-~~~~~~~~~---~~~~~~~~--~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~L  212 (251)
                      ..+..+++.+. +++..+..+   .+.+++..  .....+++.+|+..+  .+.+..|..|+||||+|+..|+.++|++|
T Consensus       125 ~~v~~Ll~~g~~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g--~~~~~~~~~g~tpLh~A~~~g~~~~v~~L  202 (276)
T 4hbd_A          125 PVVQQLLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG--NINAKASQAGQTALMLAVSHGRVDVVKAL  202 (276)
T ss_dssp             HHHHHHHHTSCCCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHS--CTTCCCTTTCCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHCCCCcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcC--CCccccCCCCCCHHHHHHHcCCHHHHHHH
Confidence            56777788776 665554443   33333222  334566777777776  45667788999999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          213 LENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       213 l~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                      +++|++++.+|..|+||||+|+..|+.++|++|++
T Consensus       203 l~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~  237 (276)
T 4hbd_A          203 LACEADVNVQDDDGSTALMCACEHGHKEIAGLLLA  237 (276)
T ss_dssp             HHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             HhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHh
Confidence            99999999999999999999999999999999998

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.68  E-value=2.2e-16  Score=135.03  Aligned_cols=92  Identities=17%  Similarity=0.171  Sum_probs=76.7

Q ss_pred             CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC-----CCCCCCCCCcH
Q 025512          155 DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA-----VTLQNMDGKTP  229 (251)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad-----~~~~d~~G~Tp  229 (251)
                      +....+.++..+ ....+++++|+..+  .+++..|..|+||||+|+..|+.++|++|+++|++     ++.+|..|+||
T Consensus       138 g~t~L~~A~~~g-~~~~~~v~~Ll~~g--a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~  214 (364)
T 3ljn_A          138 GQTALHWCVGLG-PEYLEMIKILVQLG--ASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSH  214 (364)
T ss_dssp             CCCHHHHHHHSC-GGGHHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCT
T ss_pred             CCCHHHHHHHcC-CchHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcH
Confidence            344555544433 11567777777776  67888999999999999999999999999999999     99999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhCC
Q 025512          230 IDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       230 L~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ||+|+..|+.++|++|+++.
T Consensus       215 L~~A~~~g~~~~v~~Ll~~g  234 (364)
T 3ljn_A          215 LHWAILINWEDVAMRFVEMG  234 (364)
T ss_dssp             THHHHTTTCHHHHHHHHTTT
T ss_pred             HHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999999863

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.68  E-value=9.5e-17  Score=127.66  Aligned_cols=149  Identities=17%  Similarity=0.215  Sum_probs=110.1

Q ss_pred             hHHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHh
Q 025512           69 SIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMES  147 (251)
Q Consensus        69 ~~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~  147 (251)
                      ..+..|...+   .+..+..++..+++        ++ .+..|++.++.++....           .    ..+..+++.
T Consensus        27 t~L~~A~~~g---~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~~~-----------~----~~v~~Ll~~   80 (223)
T 2f8y_A           27 TALHLAARYS---RSDAAKRLLEASAD--------ANIQDNMGRTPLHAAVSADA-----------Q----GVFQILIRN   80 (223)
T ss_dssp             CHHHHHHHTT---CHHHHHHHHHTTCC--------TTCCCTTSCCHHHHHHHTTC-----------H----HHHHHHHHB
T ss_pred             chHHHHHHcC---CHHHHHHHHHcCCC--------CCCcCCCCCCHHHHHHHcCC-----------H----HHHHHHHHc
Confidence            3455565544   35556667777766        45 56777777777765521           1    344444444


Q ss_pred             cC-CCC---ccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC
Q 025512          148 LT-NPT---KKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQN  223 (251)
Q Consensus       148 ~~-~~~---~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d  223 (251)
                      +. +++   ..+....+.++...   ..+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+|
T Consensus        81 ~~~~~~~~~~~g~t~L~~A~~~~---~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~  155 (223)
T 2f8y_A           81 RATDLDARMHDGTTPLILAARLA---VEGMLEDLINSH--ADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQN  155 (223)
T ss_dssp             TTSCTTCCCTTCCCHHHHHHHHT---CHHHHHHHHHTT--CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCC
T ss_pred             CCCCcccCCCCCCcHHHHHHHhC---cHHHHHHHHHcC--CCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcC
Confidence            43 333   33445556665554   456777777766  6688889999999999999999999999999999999999


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          224 MDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       224 ~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ..|+||||+|+..|+.+++++|+++
T Consensus       156 ~~g~t~L~~A~~~~~~~~v~~Ll~~  180 (223)
T 2f8y_A          156 NREETPLFLAAREGSYETAKVLLDH  180 (223)
T ss_dssp             TTCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHcCCHHHHHHHHHc
Confidence            9999999999999999999999986

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.68  E-value=8.9e-16  Score=123.12  Aligned_cols=174  Identities=13%  Similarity=0.146  Sum_probs=116.6

Q ss_pred             hhHHHHHHHHhcCchHHHHHHHHHhhhcCCC-CCCCCCc---cchhchHHHHHHHHcCCcchHHHHHhhhhc------c-
Q 025512           68 PSIKELAEQIAKDPAFNSMAEQLQKTLHGAN-AEESIPQ---FDTTQYYSTMQQVMQNPQFMTMAERLGNAL------M-  136 (251)
Q Consensus        68 p~~~~la~~i~~n~~f~~i~~~l~~~~~~~~-~~~~~~~---~~~~g~~~l~~~l~~~~~~~~~a~~~~~~l------l-  136 (251)
                      .+.+..|...+   .+..+..++..+++... ...+...   ....++.++++.|++.+..+...+..+...      . 
T Consensus        12 ~t~L~~A~~~g---~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~   88 (237)
T 3b7b_A           12 RSPLHAAAEAG---HVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKG   88 (237)
T ss_dssp             CCHHHHHHHHT---CHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCHHHHHHHTT
T ss_pred             CCHHHHHHHcC---cHHHHHHHHHcCCCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcC
Confidence            34566676666   24455556666665211 1111111   224566777777877765443222222111      1 


Q ss_pred             CChHHHHHHHhc-CCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHH
Q 025512          137 QDPSMSHMMESL-TNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALL  212 (251)
Q Consensus       137 ~~~~~~~ll~~~-~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~L  212 (251)
                      +...+..+++.+ .+++..+   ....+.++..   +..+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|
T Consensus        89 ~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~---~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~L  163 (237)
T 3b7b_A           89 HYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEY---KHVDLVKLLLSKG--SDINIRDNEENICLHWAAFSGCVDIAEIL  163 (237)
T ss_dssp             CHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHCCHHHHHHH
T ss_pred             CHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHc---CCHHHHHHHHHCC--CCCCccCCCCCCHHHHHHHCCCHHHHHHH
Confidence            114556666666 4554443   3444444444   4467777778776  56788899999999999999999999999


Q ss_pred             HHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          213 LENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       213 l~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +++|++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       164 l~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  200 (237)
T 3b7b_A          164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRD  200 (237)
T ss_dssp             HTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             HHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcC
Confidence            9999999999999999999999999999999999864

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.68  E-value=4e-16  Score=125.16  Aligned_cols=134  Identities=22%  Similarity=0.249  Sum_probs=98.4

Q ss_pred             hhchHHHHHHHHcCC-cchHHHHHhhhhc-------cCChHHHHHHHhcCCCCccCc---HHHHHHHHhcCCCcHHHHHH
Q 025512          108 TTQYYSTMQQVMQNP-QFMTMAERLGNAL-------MQDPSMSHMMESLTNPTKKDQ---IEERMAKIKEDPSLKPILDE  176 (251)
Q Consensus       108 ~~g~~~l~~~l~~~~-~~~~~a~~~~~~l-------l~~~~~~~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~  176 (251)
                      ..++.++++.|++.+ ..+...+..+...       .+...+..+++.+.+++..+.   ...+.++..   +..+++++
T Consensus        86 ~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~~~~  162 (237)
T 3b7b_A           86 KKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFS---GCVDIAEI  162 (237)
T ss_dssp             HTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHH---CCHHHHHH
T ss_pred             HcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHC---CCHHHHHH
Confidence            456777788887765 3322221111110       111567777888888776543   445555544   45677888


Q ss_pred             HHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 025512          177 IESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLE  246 (251)
Q Consensus       177 L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  246 (251)
                      |+..+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++...+..|+
T Consensus       163 Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~  230 (237)
T 3b7b_A          163 LLAAK--CDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMS  230 (237)
T ss_dssp             HHTTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHH
T ss_pred             HHHcC--CCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            88876  678889999999999999999999999999999999999999999999999999986554443

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.68  E-value=3e-16  Score=127.58  Aligned_cols=151  Identities=13%  Similarity=0.046  Sum_probs=107.4

Q ss_pred             HHHHHHHHhcCchHHHHHH-HHHhhhcCCCCCCCCCc-----cchhchHHHHHHHHc---CCcchHHHHHhhhhccCChH
Q 025512           70 IKELAEQIAKDPAFNSMAE-QLQKTLHGANAEESIPQ-----FDTTQYYSTMQQVMQ---NPQFMTMAERLGNALMQDPS  140 (251)
Q Consensus        70 ~~~la~~i~~n~~f~~i~~-~l~~~~~~~~~~~~~~~-----~~~~g~~~l~~~l~~---~~~~~~~a~~~~~~ll~~~~  140 (251)
                      .+..|...+.-..+..+.+ ++..+.+        ++     .+..|.+.++.++..   +..               ..
T Consensus         5 ~L~~A~~~g~~~~v~~ll~~l~~~g~~--------i~~~~~~~d~~g~t~L~~A~~~~~~g~~---------------~~   61 (256)
T 2etb_A            5 RLFSVVSRGVPEELTGLLEYLRWNSKY--------LTDSAYTEGSTGKTCLMKAVLNLQDGVN---------------AC   61 (256)
T ss_dssp             HHHHHHHHTCGGGGTTHHHHHHHHTCC--------TTSGGGSBTTTTBCHHHHHHHTCBTTBC---------------TT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCC--------cccccccCCCCCCCHHHHHHHccccchH---------------HH
Confidence            3455666664444555554 3345555        33     367888888888765   211               22


Q ss_pred             HHHHHHhcCCC--------------CccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCC-------------C
Q 025512          141 MSHMMESLTNP--------------TKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDK-------------D  193 (251)
Q Consensus       141 ~~~ll~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~-------------G  193 (251)
                      +..+++.+.++              +..+....+.++..+   ..+++++|+..+  .+++..|..             |
T Consensus        62 v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g---~~~~v~~Ll~~g--a~~~~~~~~~~~~~~~~~~~~~g  136 (256)
T 2etb_A           62 IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKR---SLQCVKLLVENG--ADVHLRACGRFFQKHQGTCFYFG  136 (256)
T ss_dssp             HHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTT---CHHHHHHHHHTT--CCTTCCCCSGGGSCCSSSCCCSC
T ss_pred             HHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcC---CHHHHHHHHHcC--CCCCcccccccccccccccccCC
Confidence            33333333222              234566667666655   456777777776  567777776             9


Q ss_pred             chHHHHHHHcCCHHHHHHHHH---CCCCCCCCCCCCCcHHHHHHH--cCCHH-------HHHHHHhC
Q 025512          194 NTALHYAAGYGRKECVALLLE---NGAAVTLQNMDGKTPIDVAKL--NSQHD-------VLKLLEKD  248 (251)
Q Consensus       194 ~TpLh~Aa~~g~~~~v~~Ll~---~Gad~~~~d~~G~TpL~~A~~--~g~~~-------iv~~Ll~~  248 (251)
                      +||||+|+..|+.++|++|++   +|++++.+|..|+||||+|+.  .++.+       ++++|+++
T Consensus       137 ~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~iv~~Ll~~  203 (256)
T 2etb_A          137 ELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQM  203 (256)
T ss_dssp             SSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHHHHHHHHHc
Confidence            999999999999999999999   999999999999999999999  88888       99999874

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.68  E-value=4.6e-17  Score=130.87  Aligned_cols=149  Identities=20%  Similarity=0.140  Sum_probs=105.0

Q ss_pred             HHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhc
Q 025512           70 IKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESL  148 (251)
Q Consensus        70 ~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~  148 (251)
                      .+.+|...+   .+..+..++..+++        ++ .+..|++.++.+...+.           .    ..+..+++.+
T Consensus        48 ~L~~A~~~~---~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~~~-----------~----~~v~~Ll~~~  101 (236)
T 1ikn_D           48 PLHLAVITN---QPEIAEALLGAGCD--------PELRDFRGNTPLHLACEQGC-----------L----ASVGVLTQSC  101 (236)
T ss_dssp             HHHHHHHTT---CHHHHHCCCSCCCC--------SCCCCTTCCCHHHHHHHHTC-----------H----HHHHHHHHST
T ss_pred             HHHHHHHcC---CHHHHHHHHHcCCC--------CCCcCCCCCCHHHHHHHcCC-----------H----HHHHHHHhcc
Confidence            345554444   23444445555554        44 55667777766655421           1    2334444443


Q ss_pred             CC---------CCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCC-CCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          149 TN---------PTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWND-KDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       149 ~~---------~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      .+         .+..+....+.++..+   ..+++++|+..+  .+++.++. .|+||||+|+..|+.++|++|+++|++
T Consensus       102 ~~~~~~~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g--~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~  176 (236)
T 1ikn_D          102 TTPHLHSILKATNYNGHTCLHLASIHG---YLGIVELLVSLG--ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGAD  176 (236)
T ss_dssp             TTTSSSCGGGCCCTTCCCHHHHHHHTT---CHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCC
T ss_pred             cchhHHHHhhccCCCCCCHHHHHHHcC---CHHHHHHHHHcC--CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            32         2334555666666554   456777777776  67788887 999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          219 VTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       219 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       177 ~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~g  207 (236)
T 1ikn_D          177 VNRVTYQGYSPYQLTWGRPSTRIQQQLGQLT  207 (236)
T ss_dssp             SCCCCTTCCCGGGGCTTSSCHHHHHHHHTTS
T ss_pred             CCcccCCCCCHHHHHHccCchHHHHHHHHcc
Confidence            9999999999999999999999999999864

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.67  E-value=3.8e-16  Score=112.95  Aligned_cols=99  Identities=22%  Similarity=0.214  Sum_probs=76.2

Q ss_pred             hHHHHHHHhcCCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC
Q 025512          139 PSMSHMMESLTNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN  215 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~  215 (251)
                      ..+..+++.+.+++..+   ....+.++..   ...+++++|+..+  .+++.+|..|+||||+|+..|+.+++++|+++
T Consensus        21 ~~v~~ll~~~~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~g--~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~   95 (123)
T 3aaa_C           21 DEVKDYVAKGEDVNRTLEGGRKPLHYAADC---GQLEILEFLLLKG--ADINAPDKHHITPLLSAVYEGHVSCVKLLLSK   95 (123)
T ss_dssp             HHHHHHHHTTCCTTSCCTTSSCHHHHHHHT---TCHHHHHHHHTTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcCccCCCCCcHHHHHHHc---CCHHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHc
Confidence            44555566666555544   3444444444   4467777888876  67889999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 025512          216 GAAVTLQNMDGKTPIDVAKLNSQHDVLKLL  245 (251)
Q Consensus       216 Gad~~~~d~~G~TpL~~A~~~g~~~iv~~L  245 (251)
                      |++++.+|..|+||||+|.   ..++.++|
T Consensus        96 ga~~~~~~~~g~t~l~~A~---~~~~~~ll  122 (123)
T 3aaa_C           96 GADKTVKGPDGLTAFEATD---NQAIKALL  122 (123)
T ss_dssp             TCCTTCCCTTSCCHHHHCC---CHHHHHHH
T ss_pred             CCCCCCcCCCCCCHHHHhC---CHHHHHHh
Confidence            9999999999999999994   44555544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.67  E-value=2.2e-16  Score=130.96  Aligned_cols=74  Identities=12%  Similarity=0.042  Sum_probs=34.5

Q ss_pred             HHHHHHHHhcCCCccccccCCCC-chHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          171 KPILDEIESGGPSAMMKYWNDKD-NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       171 ~~~l~~L~~~~~~~~v~~~d~~G-~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                      .+++++|+..+  .+++..|..| .||||+|+..|+.+++++|+++|+++... ..|+||||+|+..|+.+++++|++
T Consensus       108 ~~~v~~Ll~~g--a~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~  182 (285)
T 3kea_A          108 MQTVKLFVKKN--WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLD  182 (285)
T ss_dssp             HHHHHHHHHHC--GGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcC--CCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHH
Confidence            33444444433  3344444444 35555555555555555555555443111 144555555555555555555543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.67  E-value=3.4e-16  Score=134.62  Aligned_cols=107  Identities=21%  Similarity=0.264  Sum_probs=88.0

Q ss_pred             hHHHHHHHhcCCCCc-----------cCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHH
Q 025512          139 PSMSHMMESLTNPTK-----------KDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKE  207 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~  207 (251)
                      ..+..+++.+.+++.           .+....+.++.   .+..+++++|+..+ ..+++.+|..|+||||+|+..|+.+
T Consensus       252 ~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~---~g~~~~v~~Ll~~~-~~~~n~~d~~g~TpL~~A~~~g~~~  327 (373)
T 2fo1_E          252 ASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQ---VSNMPIVKYLVGEK-GSNKDKQDEDGKTPIMLAAQEGRIE  327 (373)
T ss_dssp             HHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHS---SCCHHHHHHHHHHS-CCCTTCCCTTCCCHHHHHHHHTCHH
T ss_pred             HHHHHHHHCCCCcccccccccCcccccCCCHHHHHHH---hCCHHHHHHHHHhc-CCCccCcCCCCCCHHHHHHHcCCHH
Confidence            456777888888765           33444555443   34466777777543 2578889999999999999999999


Q ss_pred             HHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          208 CVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       208 ~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +|++|+++|++++.+|..|+||||+|+..|+.+||++|+++.
T Consensus       328 iv~~Ll~~gad~~~~d~~g~t~l~~A~~~g~~~iv~~Ll~~~  369 (373)
T 2fo1_E          328 VVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCR  369 (373)
T ss_dssp             HHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTTC
T ss_pred             HHHHHHHcCCCccCCCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.67  E-value=2.4e-16  Score=126.69  Aligned_cols=104  Identities=17%  Similarity=0.098  Sum_probs=78.5

Q ss_pred             HHHhcCCCCc---cCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCC
Q 025512          144 MMESLTNPTK---KDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVT  220 (251)
Q Consensus       144 ll~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~  220 (251)
                      +++.+.+++.   .+..+.+....+...+..+++++|+..+  .+++..|..|+||||+|+..|+.++|++|+++|++++
T Consensus         4 ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~n   81 (229)
T 2vge_A            4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSIVDFLITAGANVN   81 (229)
T ss_dssp             ------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             hhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCC
Confidence            4444544432   2233333333333334566777777766  5788899999999999999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          221 LQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       221 ~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .+|..|+||||+|+..|+.+++++|+++.
T Consensus        82 ~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g  110 (229)
T 2vge_A           82 SPDSHGWTPLHCAASCNDTVICMALVQHG  110 (229)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             CCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            99999999999999999999999999863

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.67  E-value=1.3e-16  Score=123.57  Aligned_cols=123  Identities=21%  Similarity=0.259  Sum_probs=89.3

Q ss_pred             chhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCcc---CcHHHHHHHHhcCCCcHHHHHHHHhcCCC
Q 025512          107 DTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKK---DQIEERMAKIKEDPSLKPILDEIESGGPS  183 (251)
Q Consensus       107 ~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~~~~~~  183 (251)
                      +..|.+.++.+...           +..    ..+..+++ +.+++..   +....+.++..++   .+++++|+..+  
T Consensus        41 ~~~g~t~L~~A~~~-----------g~~----~~v~~Ll~-~~~~~~~d~~g~t~L~~A~~~~~---~~~v~~Ll~~g--   99 (183)
T 3deo_A           41 VSEYETPWWTAARK-----------ADE----QALSQLLE-DRDVDAVDENGRTALLFVAGLGS---DKCVRLLAEAG--   99 (183)
T ss_dssp             HHHHHHHHHHHHHT-----------TCH----HHHHHHTT-TSCTTCCCTTSCCHHHHHHHHTC---HHHHHHHHHTT--
T ss_pred             CCCCCCHHHHHHHc-----------CCH----HHHHHHHh-cCCCCCcCCCCCCHHHHHHHcCC---HHHHHHHHHcC--
Confidence            44566666666554           222    33444444 4444443   4455566655544   56777777776  


Q ss_pred             ccccccC-CCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc----------------CCHHHHHHHH
Q 025512          184 AMMKYWN-DKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN----------------SQHDVLKLLE  246 (251)
Q Consensus       184 ~~v~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~----------------g~~~iv~~Ll  246 (251)
                      .+++.+| ..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..                |+.+++++|.
T Consensus       100 a~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~~l~~a~~~~~~~i~~~L~  179 (183)
T 3deo_A          100 ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLE  179 (183)
T ss_dssp             CCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHhccCcccccHHHHHHHcCHHHHHHHHH
Confidence            6677787 8899999999999999999999999999999999999999998765                6788888888


Q ss_pred             hCCC
Q 025512          247 KDAF  250 (251)
Q Consensus       247 ~~~~  250 (251)
                      ++-|
T Consensus       180 ~~~~  183 (183)
T 3deo_A          180 GQVF  183 (183)
T ss_dssp             TCCC
T ss_pred             HhhC
Confidence            7643

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.67  E-value=1.1e-15  Score=129.32  Aligned_cols=60  Identities=23%  Similarity=0.241  Sum_probs=32.8

Q ss_pred             ccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       184 ~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      .+++.+|.+|+||||+|+..|+.++|++||++|||++.+     +|||+|++.|+.+||++|+++
T Consensus       264 ~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~-----~~L~~A~~~~~~~iv~~Ll~~  323 (337)
T 4g8k_A          264 IEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG-----DLVMTARRNYDHSLVKVLLSH  323 (337)
T ss_dssp             CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC-----CHHHHHHHTTCHHHHHHHHHT
T ss_pred             CcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC-----CHHHHHHHcCCHHHHHHHHHC
Confidence            345555555555555555555555555555555555432     355555555555555555553

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.66  E-value=4.3e-16  Score=114.76  Aligned_cols=86  Identities=24%  Similarity=0.242  Sum_probs=74.4

Q ss_pred             HHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 025512          159 ERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ  238 (251)
Q Consensus       159 ~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~  238 (251)
                      .+.++..+   ..+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus        18 l~~A~~~g---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~   92 (136)
T 2jab_A           18 LLEAARAG---QDDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGH   92 (136)
T ss_dssp             HHHHHHHT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTC
T ss_pred             HHHHHHhC---CHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHHHHcCC
Confidence            34444443   456667777776  6688899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 025512          239 HDVLKLLEKDA  249 (251)
Q Consensus       239 ~~iv~~Ll~~~  249 (251)
                      .+++++|+++.
T Consensus        93 ~~~v~~Ll~~g  103 (136)
T 2jab_A           93 LEIAEVLLKHG  103 (136)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            99999999863

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.66  E-value=7.3e-17  Score=118.92  Aligned_cols=90  Identities=17%  Similarity=0.146  Sum_probs=77.0

Q ss_pred             cCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCC-CCcHHHH
Q 025512          154 KDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMD-GKTPIDV  232 (251)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~-G~TpL~~  232 (251)
                      .+....+.++..+   ..+++++|+..+  .+++.+|..|+||||+|+. |+.+++++|+++|++++.+|.. |+||||+
T Consensus        11 ~g~t~L~~A~~~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~   84 (136)
T 1d9s_A           11 SSDAGLATAAARG---QVETVRQLLEAG--ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATLTRPVHD   84 (136)
T ss_dssp             CCSCHHHHHHHTT---CHHHHHHHHHTT--CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTTBCHHHH
T ss_pred             CCccHHHHHHHcC---CHHHHHHHHHcC--CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCCCCHHHH
Confidence            3444555555544   367777777776  6788899999999999999 9999999999999999999999 9999999


Q ss_pred             HHHcCCHHHHHHHHhCC
Q 025512          233 AKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       233 A~~~g~~~iv~~Ll~~~  249 (251)
                      |+..|+.+++++|+++.
T Consensus        85 A~~~~~~~~v~~Ll~~g  101 (136)
T 1d9s_A           85 AAREGFLDTLVVLHRAG  101 (136)
T ss_dssp             HHHHTCHHHHHHHHHTC
T ss_pred             HHHcCCHHHHHHHHHcC
Confidence            99999999999999863

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.65  E-value=3.2e-16  Score=129.04  Aligned_cols=105  Identities=20%  Similarity=0.249  Sum_probs=82.5

Q ss_pred             HHHHHHHhcCCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCC
Q 025512          140 SMSHMMESLTNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENG  216 (251)
Q Consensus       140 ~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~G  216 (251)
                      .+..+++.+++++..+   ..+.+.++..++.++   +++|+..+  .+++..+..|+||||+|+..++.+++++|+++|
T Consensus        68 ~v~~Ll~~Gadvn~~d~~G~TpLh~A~~~g~~~~---v~~Ll~~~--a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g  142 (269)
T 4b93_B           68 RLAKVPASGLGVNVTSQDGSSPLHVAALHGRADL---IPLLLKHG--ANAGARNADQAVPLHLACQQGHFQVVKCLLDSN  142 (269)
T ss_dssp             -------CCCCTTCCCTTSCCHHHHHHHTTCTTH---HHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHH---HHHHHhcC--CCcCccCCCCCCccccccccChHHHHHHHHHCC
Confidence            4455677777776554   456667776666554   44556655  567888999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          217 AAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       217 ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ++++.+|..|+||||+|+..|+.++|++|+++.
T Consensus       143 ~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  175 (269)
T 4b93_B          143 AKPNKKDLSGNTPLIYACSGGHHELVALLLQHG  175 (269)
T ss_dssp             CCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTT
T ss_pred             CCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCC
Confidence            999999999999999999999999999999863

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.65  E-value=3.9e-16  Score=111.48  Aligned_cols=92  Identities=34%  Similarity=0.443  Sum_probs=78.7

Q ss_pred             ccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 025512          153 KKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV  232 (251)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~  232 (251)
                      ..+....+.++..++   .+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+
T Consensus         7 ~~g~t~L~~A~~~~~---~~~~~~Ll~~g--~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~~   81 (115)
T 2l6b_A            7 KDGNTPLHNAAKNGH---AEEVKKLLSKG--ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHL   81 (115)
T ss_dssp             CSSCCHHHHHHHHTC---HHHHHHHTTTT--CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTHH
T ss_pred             CCCCCHHHHHHHcCC---HHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHH
Confidence            344555666665544   56677777776  5688899999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhCC
Q 025512          233 AKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       233 A~~~g~~~iv~~Ll~~~  249 (251)
                      |+..++.+++++|+++.
T Consensus        82 A~~~~~~~~~~~Ll~~g   98 (115)
T 2l6b_A           82 AKKNGHHEIVKLLDAKG   98 (115)
T ss_dssp             HHTTTCHHHHHHHHTTS
T ss_pred             HHHCCCHHHHHHHHHcC
Confidence            99999999999999863

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.65  E-value=1.1e-15  Score=126.75  Aligned_cols=135  Identities=13%  Similarity=0.083  Sum_probs=90.3

Q ss_pred             hchHHHHHHHHcCCcchHHHHHhhhhcc-------CChHHHHHHHhcCCCCcc--CcHHHHHHHHhcCCCcHHHHHHHHh
Q 025512          109 TQYYSTMQQVMQNPQFMTMAERLGNALM-------QDPSMSHMMESLTNPTKK--DQIEERMAKIKEDPSLKPILDEIES  179 (251)
Q Consensus       109 ~g~~~l~~~l~~~~~~~~~a~~~~~~ll-------~~~~~~~ll~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~L~~  179 (251)
                      .|+.++++.|++.++.+...+..+...+       +...+..+++.+.+++..  +....+.++..+   ..+++++|+.
T Consensus       102 ~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~g~t~L~~A~~~g---~~~~v~~Ll~  178 (285)
T 3d9h_A          102 GGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLASPIHEAARRG---HVECVNSLIA  178 (285)
T ss_dssp             TTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCSCTTSCHHHHHHHHT---CHHHHHHHHH
T ss_pred             CCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHcC---CHHHHHHHHH
Confidence            3455556666665544332222221110       114556667766665433  344445555444   3556666676


Q ss_pred             cCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          180 GGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       180 ~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .+  .+++..|..|+||||+|+..|+.+++++|+++|++++. +..|+||||+|+..|+.+++++|+++.
T Consensus       179 ~g--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~g  245 (285)
T 3d9h_A          179 YG--GNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFG  245 (285)
T ss_dssp             TT--CCTTCCBTTTBCHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            65  56778888899999999999999999999999999884 888899999999999999999888753

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.65  E-value=6.1e-17  Score=129.10  Aligned_cols=106  Identities=24%  Similarity=0.222  Sum_probs=81.0

Q ss_pred             hHHHHHHHhcCCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhc-CCCccccccCCCCchHHHHHHHcCCHHHHHHHHH
Q 025512          139 PSMSHMMESLTNPTKKD---QIEERMAKIKEDPSLKPILDEIESG-GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLE  214 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~-~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~  214 (251)
                      ..+..+++.+.+++..+   ....+.++..   +..+++++|+.. +  .+++.+|..|+||||+|+..|+.++|++|++
T Consensus        87 ~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---~~~~~v~~Ll~~~g--~~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~  161 (222)
T 3ehr_A           87 SWLRECLDNRVGVNGLDKAGSTALYWACHG---GHKDIVEMLFTQPN--IELNQQNKLGDTALHAAAWKGYADIVQLLLA  161 (222)
T ss_dssp             HHHHHHHHTTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHTTSTT--CCCCCCCTTSCCHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhCCCCccccCCCCCCHHHHHHHc---CCHHHHHHHHcCCC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHH
Confidence            45566666666666444   3444554444   446777777776 5  6788899999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          215 NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       215 ~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +|++++.+|..|+||||+|+..++.++++.|+++.
T Consensus       162 ~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~  196 (222)
T 3ehr_A          162 KGARTDLRNIEKKLAFDMATNAACASLLKKKQGTD  196 (222)
T ss_dssp             HTCCSCCCCTTSCCHHHHCCSHHHHHHHC------
T ss_pred             cCCCCccccCCCCCHHHHhcchhHHHHHHHHhccc
Confidence            99999999999999999999999999999888753

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.65  E-value=1.2e-15  Score=125.00  Aligned_cols=171  Identities=15%  Similarity=0.094  Sum_probs=117.7

Q ss_pred             HHHHHHHHhcCchHHHHHHHHHhhhcCCC-CCCCCCc---cchhchHHHHHHHHcCCcchHH------------------
Q 025512           70 IKELAEQIAKDPAFNSMAEQLQKTLHGAN-AEESIPQ---FDTTQYYSTMQQVMQNPQFMTM------------------  127 (251)
Q Consensus        70 ~~~la~~i~~n~~f~~i~~~l~~~~~~~~-~~~~~~~---~~~~g~~~l~~~l~~~~~~~~~------------------  127 (251)
                      .+..|...+   .+.-+..+++.+++... +..+...   ....++.++++.|++.+..+..                  
T Consensus        75 ~L~~A~~~~---~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~  151 (285)
T 1wdy_A           75 PFLLAAIAG---SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATA  151 (285)
T ss_dssp             HHHHHHHHT---CHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCH
T ss_pred             HHHHHHHcC---CHHHHHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcH
Confidence            445555444   34445555566554221 1111111   2356778888888887654332                  


Q ss_pred             ---HHHhhhhccCChHHHHHHHh-cCCCCcc---CcHHHHHHHHhcCC-CcHHHHHHHHhcCCCccccccCCCCchHHHH
Q 025512          128 ---AERLGNALMQDPSMSHMMES-LTNPTKK---DQIEERMAKIKEDP-SLKPILDEIESGGPSAMMKYWNDKDNTALHY  199 (251)
Q Consensus       128 ---a~~~~~~ll~~~~~~~ll~~-~~~~~~~---~~~~~~~~~~~~~~-~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~  199 (251)
                         +...+..    ..+..+++. +.+++..   +....+.++...+. ...+++++|+..+  .+++.+|..|+||||+
T Consensus       152 L~~A~~~~~~----~~v~~Ll~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g--~~~~~~~~~g~t~L~~  225 (285)
T 1wdy_A          152 LMDAAEKGHV----EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHG--ADVNVRGERGKTPLIL  225 (285)
T ss_dssp             HHHHHHHTCH----HHHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTT--CCSSCCCTTSCCHHHH
T ss_pred             HHHHHHcCCH----HHHHHHHHhcCCCCCccCCCCCCHHHHHHHccccchHHHHHHHHHHcC--CCCCCcCCCCCcHHHH
Confidence               1111222    456666665 6666554   34445555554443 3477888888887  6788899999999999


Q ss_pred             HHHcCCHHHHHHHHH-CCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          200 AAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       200 Aa~~g~~~~v~~Ll~-~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      |+..|+.+++++|++ .|++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       226 A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~~G  276 (285)
T 1wdy_A          226 AVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  276 (285)
T ss_dssp             HHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHcCCHHHHHHHHhccCCCccccCCCCCcHHHHHHHcCcHHHHHHHHHcC
Confidence            999999999999999 79999999999999999999999999999999853

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.65  E-value=1.5e-15  Score=125.79  Aligned_cols=149  Identities=15%  Similarity=0.115  Sum_probs=111.9

Q ss_pred             hHHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHh
Q 025512           69 SIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMES  147 (251)
Q Consensus        69 ~~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~  147 (251)
                      ..+..|...+   .+..+..++..+.+        ++ .+..|++.++.+...           +..    ..+..+++.
T Consensus        61 t~L~~Aa~~g---~~~~v~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~-----------g~~----~~v~~Ll~~  114 (285)
T 3d9h_A           61 SPMHEAAIHG---HQLSLRNLISQGWA--------VNIITADHVSPLHEACLG-----------GHL----SCVKILLKH  114 (285)
T ss_dssp             CHHHHHHHTT---CHHHHHHHHHTTCC--------SCEECTTCCCHHHHHHHT-----------TCH----HHHHHHHHT
T ss_pred             CHHHHHHHcC---CHHHHHHHHHCCCC--------CCCcCCCCCCHHHHHHHC-----------CcH----HHHHHHHHC
Confidence            4455555554   34556666777766        55 677888888887766           222    456667777


Q ss_pred             cCCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Q 025512          148 LTNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNM  224 (251)
Q Consensus       148 ~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~  224 (251)
                      +.+++..+   ....+.++..+   ..+++++|+..+  .+++. +..|+||||+|+..|+.+++++|+++|++++.+|.
T Consensus       115 ga~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~g--~~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~  188 (285)
T 3d9h_A          115 GAQVNGVTADWHTPLFNACVSG---SWDCVNLLLQHG--ASVQP-ESDLASPIHEAARRGHVECVNSLIAYGGNIDHKIS  188 (285)
T ss_dssp             TCCSSCCCTTCCCHHHHHHHHT---CHHHHHHHHHTT--CCSSC-SCTTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBT
T ss_pred             CCCCCCCCCCCCCHHHHHHHcC---HHHHHHHHHHCC--CCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCC
Confidence            77776554   44455555544   456777777776  34443 44599999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          225 DGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       225 ~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .|+||||+|+..|+.+++++|+++.
T Consensus       189 ~g~t~L~~A~~~~~~~~v~~Ll~~g  213 (285)
T 3d9h_A          189 HLGTPLYLACENQQRACVKKLLESG  213 (285)
T ss_dssp             TTBCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHcCcHHHHHHHHHCC
Confidence            9999999999999999999999863

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.65  E-value=1.1e-15  Score=129.22  Aligned_cols=127  Identities=18%  Similarity=0.169  Sum_probs=95.8

Q ss_pred             cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHH-hcCCCCccC---cHHHHHHHHhc-CCCcHHHHHHHHhc
Q 025512          106 FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMME-SLTNPTKKD---QIEERMAKIKE-DPSLKPILDEIESG  180 (251)
Q Consensus       106 ~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~-~~~~~~~~~---~~~~~~~~~~~-~~~~~~~l~~L~~~  180 (251)
                      .+..|.+.++.+...           +..    ..+..+++ .+++++..+   ....+...... ......++++|+..
T Consensus       164 ~~~~g~T~L~~A~~~-----------g~~----~~v~~LL~~~gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~  228 (337)
T 4g8k_A          164 LRKGGATALMDAAEK-----------GHV----EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDH  228 (337)
T ss_dssp             CTTCSCCHHHHHHHH-----------TCH----HHHHHHHHHSCCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHT
T ss_pred             ccCCCCcHHHHHHHC-----------CCH----HHHHHHHhccCCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHC
Confidence            455666777666544           222    33444443 355555443   33444444444 45566788888888


Q ss_pred             CCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          181 GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       181 ~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      |  ++++.+|..|+||||+|+..|+.++|++|++. |++++.+|..|+||||+|++.|+.+||++|+++.
T Consensus       229 g--ad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~G  296 (337)
T 4g8k_A          229 G--ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRG  296 (337)
T ss_dssp             T--CCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTS
T ss_pred             C--CCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            7  67899999999999999999999999999986 8999999999999999999999999999999863

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.65  E-value=2.7e-15  Score=120.45  Aligned_cols=155  Identities=19%  Similarity=0.206  Sum_probs=110.1

Q ss_pred             hHHHHHHHHhcCchHHHHHHHHH-hhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHH
Q 025512           69 SIKELAEQIAKDPAFNSMAEQLQ-KTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMME  146 (251)
Q Consensus        69 ~~~~la~~i~~n~~f~~i~~~l~-~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~  146 (251)
                      +.+..|...+.-..++.+.+.+. .+.+        ++ .+..|.+.++.+...           +..    ..+..+++
T Consensus        11 t~L~~A~~~g~~~~v~~Ll~~~~~~~~~--------~~~~~~~g~t~L~~A~~~-----------~~~----~~v~~Ll~   67 (241)
T 1k1a_A           11 TPLHIAVVQGNLPAVHRLVNLFQQGGRE--------LDIYNNLRQTPLHLAVIT-----------TLP----SVVRLLVT   67 (241)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHHHTTCC--------SCCCCTTSCCHHHHHHHT-----------TCH----HHHHHHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHHHHhcCCC--------CCcccccCCCHHHHHHHc-----------CCH----HHHHHHHH
Confidence            34566666553333444444322 3333        34 566778887777665           222    45566677


Q ss_pred             hcCCCCccCc---HHHHHHHHhcCCCcHHHHHHHHhcCC--CccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCC
Q 025512          147 SLTNPTKKDQ---IEERMAKIKEDPSLKPILDEIESGGP--SAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTL  221 (251)
Q Consensus       147 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~L~~~~~--~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~  221 (251)
                      .+.+++..+.   ...+.++..   ...+++++|+..+.  ..+++..|..|+||||+|+..|+.+++++|+++|++++.
T Consensus        68 ~g~~~~~~~~~g~t~l~~A~~~---~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~  144 (241)
T 1k1a_A           68 AGASPMALDRHGQTAAHLACEH---RSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDA  144 (241)
T ss_dssp             TTCCTTCCCTTSCCHHHHHHHT---TCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTC
T ss_pred             cCCCccccCCCCCCHHHHHHHc---CCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCCccc
Confidence            7777665543   344444443   44566666776653  136788899999999999999999999999999999999


Q ss_pred             CC-CCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          222 QN-MDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       222 ~d-~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ++ ..|+||||+|+..|+.+++++|+++.
T Consensus       145 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g  173 (241)
T 1k1a_A          145 VDIKSGRSPLIHAVENNSLSMVQLLLQHG  173 (241)
T ss_dssp             CCTTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccCCCcHHHHHHHcCCHHHHHHHHHcC
Confidence            99 89999999999999999999999863

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.64  E-value=3e-16  Score=126.13  Aligned_cols=126  Identities=21%  Similarity=0.193  Sum_probs=94.4

Q ss_pred             cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCcc---CcHHHHHHHHhcCCCcHHHHHHHHhcCC
Q 025512          106 FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKK---DQIEERMAKIKEDPSLKPILDEIESGGP  182 (251)
Q Consensus       106 ~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~~~~~  182 (251)
                      .+..|++.++.+...+..               ..+..+++.+.+++..   +....+.++..+   ..+++++|+..+.
T Consensus        41 ~~~~g~t~L~~A~~~~~~---------------~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~---~~~~v~~Ll~~~~  102 (236)
T 1ikn_D           41 QNNLQQTPLHLAVITNQP---------------EIAEALLGAGCDPELRDFRGNTPLHLACEQG---CLASVGVLTQSCT  102 (236)
T ss_dssp             CCTTCCCHHHHHHHTTCH---------------HHHHCCCSCCCCSCCCCTTCCCHHHHHHHHT---CHHHHHHHHHSTT
T ss_pred             cCCCCCCHHHHHHHcCCH---------------HHHHHHHHcCCCCCCcCCCCCCHHHHHHHcC---CHHHHHHHHhccc
Confidence            556677888777665221               2333334445555543   344555555554   4566667777653


Q ss_pred             ----CccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCC-CCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          183 ----SAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNM-DGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       183 ----~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~-~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                          ...++..+..|+||||+|+..|+.++|++|+++|++++.++. .|+||||+|+..|+.++|++|+++.
T Consensus       103 ~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g  174 (236)
T 1ikn_D          103 TPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCG  174 (236)
T ss_dssp             TTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTT
T ss_pred             chhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence                234677888999999999999999999999999999999997 9999999999999999999999863

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.64  E-value=9.8e-16  Score=133.97  Aligned_cols=142  Identities=18%  Similarity=0.202  Sum_probs=107.5

Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccC---
Q 025512           80 DPAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKD---  155 (251)
Q Consensus        80 n~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~---  155 (251)
                      ...+..+..+++.+.+        ++ .+..|.+.++.+....           ..    ..+..+++.+.+++..+   
T Consensus       222 ~~~~~~~~~Ll~~g~~--------~~~~~~~g~t~L~~A~~~g-----------~~----~~v~~Ll~~~~~~~~~~~~g  278 (437)
T 1n11_A          222 QNQVEVARSLLQYGGS--------ANAESVQGVTPLHLAAQEG-----------HA----EMVALLLSKQANGNLGNKSG  278 (437)
T ss_dssp             TTCHHHHHHHHHTTCC--------TTCCCTTCCCHHHHHHHTT-----------CH----HHHHHHHTTTCCTTCCCTTC
T ss_pred             cCCHHHHHHHHHcCCC--------CCCCCCCCCCHHHHHHHCC-----------CH----HHHHHHHhcCCCCCCCCCCC
Confidence            3456666677777766        44 5566777777665542           11    34455555565555443   


Q ss_pred             cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 025512          156 QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL  235 (251)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  235 (251)
                      ....+.++..+   ..+++++|+..+  .+++..|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+.
T Consensus       279 ~t~L~~A~~~~---~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~  353 (437)
T 1n11_A          279 LTPLHLVAQEG---HVPVADVLIKHG--VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQ  353 (437)
T ss_dssp             CCHHHHHHHHT---CHHHHHHHHHHT--CCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHcC---CHHHHHHHHhCC--ccCCCCCCCCCCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHH
Confidence            44555555444   456777777776  6788899999999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhCC
Q 025512          236 NSQHDVLKLLEKDA  249 (251)
Q Consensus       236 ~g~~~iv~~Ll~~~  249 (251)
                      .|+.++|++|+++.
T Consensus       354 ~g~~~iv~~Ll~~g  367 (437)
T 1n11_A          354 QGHTDIVTLLLKNG  367 (437)
T ss_dssp             TTCHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHCc
Confidence            99999999999863

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.64  E-value=3e-16  Score=127.25  Aligned_cols=102  Identities=25%  Similarity=0.318  Sum_probs=79.5

Q ss_pred             HHHHHHhcCCCCcc---CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccC-CCCchHHHHHHHcCCHHHHHHHHHCC
Q 025512          141 MSHMMESLTNPTKK---DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWN-DKDNTALHYAAGYGRKECVALLLENG  216 (251)
Q Consensus       141 ~~~ll~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d-~~G~TpLh~Aa~~g~~~~v~~Ll~~G  216 (251)
                      +..+++ +.+++..   +....+.++..++   .+++++|+..+  .+++.+| ..|+||||+|+..|+.++|++|+++|
T Consensus        61 v~~Ll~-~~~~~~~d~~g~t~L~~A~~~g~---~~~v~~Ll~~g--a~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  134 (244)
T 3ui2_A           61 LSQLLE-DRDVDAVDENGRTALLFVAGLGS---DKCVRLLAEAG--ADLDHRDMRGGLTALHMAAGYVRPEVVEALVELG  134 (244)
T ss_dssp             HHHTTT-TCCTTCBCTTSCBHHHHHHHHTC---HHHHHHHHHTT--CCTTCCCSSSCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHc-CCCCCCcCCCCCCHHHHHHHCCC---HHHHHHHHHcC--CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            333344 4444443   4455666665544   56777777776  6778787 78999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHH----------------HcCCHHHHHHHHhC
Q 025512          217 AAVTLQNMDGKTPIDVAK----------------LNSQHDVLKLLEKD  248 (251)
Q Consensus       217 ad~~~~d~~G~TpL~~A~----------------~~g~~~iv~~Ll~~  248 (251)
                      ++++.+|..|+||||+|+                ..|+.+++++|+++
T Consensus       135 a~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~  182 (244)
T 3ui2_A          135 ADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQ  182 (244)
T ss_dssp             CCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHh
Confidence            999999999999999988                66889999999874

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.63  E-value=1.3e-15  Score=121.78  Aligned_cols=137  Identities=20%  Similarity=0.222  Sum_probs=98.6

Q ss_pred             hhchHHHHHHHHcCCcchHHHHHhhhhcc-------CChHHHHHHHhcCCCCccC---cHHHHHHHHhcC-CCcHHHHHH
Q 025512          108 TTQYYSTMQQVMQNPQFMTMAERLGNALM-------QDPSMSHMMESLTNPTKKD---QIEERMAKIKED-PSLKPILDE  176 (251)
Q Consensus       108 ~~g~~~l~~~l~~~~~~~~~a~~~~~~ll-------~~~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~-~~~~~~l~~  176 (251)
                      ..++.++++.|++.+..+...+..+...+       +...+..+++.+.+++..+   ....+.++.... ..+.   ++
T Consensus        85 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~---~~  161 (240)
T 3eu9_A           85 RQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPT---RL  161 (240)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTH---HH
T ss_pred             HcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHH---HH
Confidence            45666777777776554433222221110       1146666777777766543   445555554544 3343   44


Q ss_pred             HHhcCCCccccccCC-CCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          177 IESGGPSAMMKYWND-KDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       177 L~~~~~~~~v~~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      |...+  .+++..+. .|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus       162 L~~~~--~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~  233 (240)
T 3eu9_A          162 LLTFN--VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEAR  233 (240)
T ss_dssp             HHHTT--CCTTCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC
T ss_pred             HHhcC--CCcchhhccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhh
Confidence            55555  56777776 8999999999999999999999999999999999999999999999999999999864

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.62  E-value=8e-16  Score=127.51  Aligned_cols=164  Identities=13%  Similarity=-0.000  Sum_probs=112.6

Q ss_pred             chHHHHHHHHHhhhcCCCCCCCCCc---cchhchHHHHHHHHcCCcchHHHHHhhhhcc-------CChHHHHHHHhcCC
Q 025512           81 PAFNSMAEQLQKTLHGANAEESIPQ---FDTTQYYSTMQQVMQNPQFMTMAERLGNALM-------QDPSMSHMMESLTN  150 (251)
Q Consensus        81 ~~f~~i~~~l~~~~~~~~~~~~~~~---~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll-------~~~~~~~ll~~~~~  150 (251)
                      ..+..+..++..+++.... .+...   ....|+.++++.|++.++.++..+..+...+       +...+..+++.+++
T Consensus        42 g~~~~v~~Ll~~g~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~  120 (285)
T 3kea_A           42 NNVRLVCTLLNAGALKNLL-ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR  120 (285)
T ss_dssp             TCHHHHHHHHHTTGGGSCC-TTCCHHHHHTTSSSCHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG
T ss_pred             CCHHHHHHHHhCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Confidence            3455566666666663211 12212   2245667777778777765543333322211       11567777888888


Q ss_pred             CCccCcHH-HHHHHHhcCCCcHHHHHHHHhcCCCccccccCC-CCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc
Q 025512          151 PTKKDQIE-ERMAKIKEDPSLKPILDEIESGGPSAMMKYWND-KDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKT  228 (251)
Q Consensus       151 ~~~~~~~~-~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~-~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~T  228 (251)
                      ++..+..+ .+...++...+..+++++|+..+..  +  .+. .|+||||+|+..|+.+++++|+++|++++.+|..|+|
T Consensus       121 ~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~--~--~~~~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t  196 (285)
T 3kea_A          121 LMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPS--T--FDLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFI  196 (285)
T ss_dssp             GGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCT--T--CCCSTHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCC
T ss_pred             CCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCc--c--ccccCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCC
Confidence            87766544 2333333334456788888887632  2  233 8999999999999999999999999999999999999


Q ss_pred             H-HHHHHHcCCHHHHHHHHhCC
Q 025512          229 P-IDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       229 p-L~~A~~~g~~~iv~~Ll~~~  249 (251)
                      | ||+|+..|+.+++++|+++.
T Consensus       197 ~~L~~A~~~~~~~~v~~Ll~~g  218 (285)
T 3kea_A          197 PDIKLAIDNKDIEMLQALFKYD  218 (285)
T ss_dssp             TTHHHHHHHTCHHHHHHHTTSC
T ss_pred             hHHHHHHHcCCHHHHHHHHHcC
Confidence            8 99999999999999999863

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.62  E-value=5e-15  Score=127.31  Aligned_cols=179  Identities=17%  Similarity=0.149  Sum_probs=116.3

Q ss_pred             hHHHHHHHHhcCchHHHH-----HHHHHhhhcCCC-CCCCCCc---cchhchHHHHHHHHcCCcchHHHHHhhhhcc---
Q 025512           69 SIKELAEQIAKDPAFNSM-----AEQLQKTLHGAN-AEESIPQ---FDTTQYYSTMQQVMQNPQFMTMAERLGNALM---  136 (251)
Q Consensus        69 ~~~~la~~i~~n~~f~~i-----~~~l~~~~~~~~-~~~~~~~---~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll---  136 (251)
                      ..+..|...+....+..+     ..++..+++... +..+...   ....|+.++++.|++.++.+...+..+...+   
T Consensus       127 t~Lh~Aa~~g~~~~v~~Ll~~~~~~ll~~ga~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~L~~A  206 (373)
T 2fo1_E          127 TVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQA  206 (373)
T ss_dssp             CHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHHHHHHHHhcCCCCcCCCCCCCCHHHHHHHcChHHHHHHHHHCCCCCcccCCCCCCHHHHH
Confidence            456666666644444333     345566666211 1111111   1244566677777776665443322222111   


Q ss_pred             ---CC-hHHHHHHHhc---CCC---CccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccc--------cCCCCchHHH
Q 025512          137 ---QD-PSMSHMMESL---TNP---TKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKY--------WNDKDNTALH  198 (251)
Q Consensus       137 ---~~-~~~~~ll~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~--------~d~~G~TpLh  198 (251)
                         .. ..+..+++.+   .++   +..+....+.++........+++++|+..+  .+++.        .|..|+||||
T Consensus       207 ~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g--~~~~~~~~~~~~~~d~~g~t~Lh  284 (373)
T 2fo1_E          207 AANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKG--AKVDYDGAARKDSEKYKGRTALH  284 (373)
T ss_dssp             HHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHT--CCSSCCSGGGTSSSSCCCCCTHH
T ss_pred             HHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCC--CCcccccccccCcccccCCCHHH
Confidence               11 2344444433   333   344555666666665555788888888877  33443        5778999999


Q ss_pred             HHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          199 YAAGYGRKECVALLLENG-AAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       199 ~Aa~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +|+..|+.++|++|+++| ++++.+|..|+||||+|+..|+.+||++|+++.
T Consensus       285 ~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g  336 (373)
T 2fo1_E          285 YAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQG  336 (373)
T ss_dssp             HHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            999999999999999885 999999999999999999999999999999863

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.61  E-value=2.4e-15  Score=116.37  Aligned_cols=77  Identities=25%  Similarity=0.360  Sum_probs=69.6

Q ss_pred             CcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          169 SLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQN-MDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       169 ~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d-~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                      +..+++++|+. +  .+++.+|..|+||||+|+..|+.+++++|+++|++++.++ ..|+||||+|+..|+.+++++|++
T Consensus        55 g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~  131 (183)
T 3deo_A           55 ADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVE  131 (183)
T ss_dssp             TCHHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHhcCcHHHHHHHHH
Confidence            34566666777 3  5788899999999999999999999999999999999999 899999999999999999999997


Q ss_pred             C
Q 025512          248 D  248 (251)
Q Consensus       248 ~  248 (251)
                      +
T Consensus       132 ~  132 (183)
T 3deo_A          132 L  132 (183)
T ss_dssp             H
T ss_pred             c
Confidence            5

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.61  E-value=7.9e-15  Score=120.15  Aligned_cols=141  Identities=19%  Similarity=0.207  Sum_probs=105.7

Q ss_pred             CchHHHHHHHHHhhhcCCCCCCCCCc-c-chhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccC--
Q 025512           80 DPAFNSMAEQLQKTLHGANAEESIPQ-F-DTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKD--  155 (251)
Q Consensus        80 n~~f~~i~~~l~~~~~~~~~~~~~~~-~-~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~--  155 (251)
                      ...+..+..+++.+.+        ++ . +..|++.++.+...           +..    ..+..+++.+.+++..+  
T Consensus        15 ~g~~~~v~~Ll~~g~~--------~~~~~~~~g~t~L~~A~~~-----------g~~----~~v~~Ll~~g~~~~~~~~~   71 (285)
T 1wdy_A           15 NEDVDLVQQLLEGGAN--------VNFQEEEGGWTPLHNAVQM-----------SRE----DIVELLLRHGADPVLRKKN   71 (285)
T ss_dssp             TTCHHHHHHHHHTTCC--------TTCCCTTTCCCHHHHHHHT-----------TCH----HHHHHHHHTTCCTTCCCTT
T ss_pred             cCCHHHHHHHHHcCCC--------cccccCCCCCcHHHHHHHc-----------CCH----HHHHHHHHcCCCCcccCCC
Confidence            3456666677777765        34 2 45566666666554           222    45566666666665543  


Q ss_pred             -cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCC----------CC
Q 025512          156 -QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQ----------NM  224 (251)
Q Consensus       156 -~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~----------d~  224 (251)
                       ....+.++..+   ..+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+          +.
T Consensus        72 g~t~L~~A~~~~---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~  146 (285)
T 1wdy_A           72 GATPFLLAAIAG---SVKLLKLFLSKG--ADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRK  146 (285)
T ss_dssp             CCCHHHHHHHHT---CHHHHHHHHHTT--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTC
T ss_pred             CCCHHHHHHHcC---CHHHHHHHHHcC--CCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhcc
Confidence             44555555544   456777777776  567888999999999999999999999999999999988          78


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          225 DGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       225 ~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      .|.||||+|+..|+.+++++|+++
T Consensus       147 ~g~t~L~~A~~~~~~~~v~~Ll~~  170 (285)
T 1wdy_A          147 GGATALMDAAEKGHVEVLKILLDE  170 (285)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHh
Confidence            899999999999999999999975

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.61  E-value=2.7e-15  Score=126.70  Aligned_cols=91  Identities=24%  Similarity=0.264  Sum_probs=78.4

Q ss_pred             cCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 025512          154 KDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA  233 (251)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  233 (251)
                      .+....+.++..+   ..+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|
T Consensus        57 ~g~t~L~~A~~~g---~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~~~~~~~~g~t~L~~A  131 (351)
T 3utm_A           57 RKSTPLHLAAGYN---RVRIVQLLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEA  131 (351)
T ss_dssp             TCCCHHHHHHHTT---CHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCHHHHHHHcC---CHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            3445555555544   467777778776  67888999999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCC
Q 025512          234 KLNSQHDVLKLLEKDA  249 (251)
Q Consensus       234 ~~~g~~~iv~~Ll~~~  249 (251)
                      +..|+.+++++|+++.
T Consensus       132 ~~~~~~~~v~~Ll~~g  147 (351)
T 3utm_A          132 ASKNRVEVCSLLLSHG  147 (351)
T ss_dssp             HHTTCHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHcC
Confidence            9999999999999863

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.61  E-value=4.1e-15  Score=121.08  Aligned_cols=94  Identities=21%  Similarity=0.209  Sum_probs=73.2

Q ss_pred             cCcHHHHHHHHhcCCCcHHHHHHHHhcCC---------CccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-
Q 025512          154 KDQIEERMAKIKEDPSLKPILDEIESGGP---------SAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQN-  223 (251)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~~L~~~~~---------~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d-  223 (251)
                      .+....+.++.....+..+++++|+..+.         ...++..|..|+||||+|+..|+.++|++|+++|++++.++ 
T Consensus        45 ~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~  124 (260)
T 3jxi_A           45 TGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR  124 (260)
T ss_dssp             TCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCE
T ss_pred             CCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCcccc
Confidence            35566677664423334445555554431         12345556689999999999999999999999999999999 


Q ss_pred             -------------CCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          224 -------------MDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       224 -------------~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                                   ..|+||||+|+..|+.++|++|++
T Consensus       125 ~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~  161 (260)
T 3jxi_A          125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTE  161 (260)
T ss_dssp             ECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHH
T ss_pred             ccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHh
Confidence                         689999999999999999999998

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.61  E-value=3.2e-15  Score=121.15  Aligned_cols=85  Identities=22%  Similarity=0.293  Sum_probs=73.8

Q ss_pred             HHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC-CCCCcHHHHHHHcCCHH
Q 025512          162 AKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQN-MDGKTPIDVAKLNSQHD  240 (251)
Q Consensus       162 ~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d-~~G~TpL~~A~~~g~~~  240 (251)
                      ...+...+..+++++|+. +  .+++.+|..|+||||+|+..|+.++|++|+++|++++.++ ..|+||||+|+..|+.+
T Consensus        49 L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~~g~~~  125 (244)
T 3ui2_A           49 WWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPE  125 (244)
T ss_dssp             HHHHHTTTCHHHHHHTTT-T--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHHTTCHH
T ss_pred             HHHHHHcCCHHHHHHHHc-C--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHH
Confidence            333444455677777777 3  5788899999999999999999999999999999999999 88999999999999999


Q ss_pred             HHHHHHhCC
Q 025512          241 VLKLLEKDA  249 (251)
Q Consensus       241 iv~~Ll~~~  249 (251)
                      +|++|+++.
T Consensus       126 ~v~~Ll~~g  134 (244)
T 3ui2_A          126 VVEALVELG  134 (244)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHCC
Confidence            999999863

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.59  E-value=3.8e-15  Score=118.67  Aligned_cols=89  Identities=21%  Similarity=0.208  Sum_probs=76.6

Q ss_pred             CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHH
Q 025512          155 DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVA  233 (251)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A  233 (251)
                      +....+.++..++   .+++++|+..+  .+++.+|..|+||||+|+..|+.++|++|+++ |++++.+|..|+||||+|
T Consensus        73 g~t~L~~A~~~g~---~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A  147 (222)
T 3ehr_A           73 IDNPLHEAAKRGN---LSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAA  147 (222)
T ss_dssp             ESCHHHHHHHHTC---HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHH
T ss_pred             cccccccccccCc---HHHHHHHHhCC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHHHH
Confidence            3445566665544   56666677765  66888999999999999999999999999999 999999999999999999


Q ss_pred             HHcCCHHHHHHHHhC
Q 025512          234 KLNSQHDVLKLLEKD  248 (251)
Q Consensus       234 ~~~g~~~iv~~Ll~~  248 (251)
                      +..|+.+||++|+++
T Consensus       148 ~~~~~~~~v~~Ll~~  162 (222)
T 3ehr_A          148 AWKGYADIVQLLLAK  162 (222)
T ss_dssp             HHHTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHc
Confidence            999999999999975

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.59  E-value=4.4e-15  Score=121.90  Aligned_cols=92  Identities=15%  Similarity=0.091  Sum_probs=77.3

Q ss_pred             CccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCC--------------CCchHHHHHHHcCCHHHHHHHHH---
Q 025512          152 TKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWND--------------KDNTALHYAAGYGRKECVALLLE---  214 (251)
Q Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~--------------~G~TpLh~Aa~~g~~~~v~~Ll~---  214 (251)
                      +..+....+.++..+   ..+++++|+..+  .+++..+.              .|+||||+|+..|+.++|++|++   
T Consensus        98 d~~g~tpL~~A~~~g---~~~~v~~Ll~~g--a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~  172 (273)
T 2pnn_A           98 YYKGQTALHIAIERR---NMTLVTLLVENG--ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSW  172 (273)
T ss_dssp             TTTTCCHHHHHHHTT---CHHHHHHHHHTT--CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSS
T ss_pred             cCCCCCHHHHHHHcC---CHHHHHHHHHCC--CCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccc
Confidence            345666677666554   456777777776  56777776              79999999999999999999999   


Q ss_pred             CCCCCCCCCCCCCcHHHHHHHcCC---------HHHHHHHHhC
Q 025512          215 NGAAVTLQNMDGKTPIDVAKLNSQ---------HDVLKLLEKD  248 (251)
Q Consensus       215 ~Gad~~~~d~~G~TpL~~A~~~g~---------~~iv~~Ll~~  248 (251)
                      +|++++.+|..|+||||+|+..|+         .+++++|+++
T Consensus       173 ~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~  215 (273)
T 2pnn_A          173 QPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILIL  215 (273)
T ss_dssp             CCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCCceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHh
Confidence            999999999999999999999998         7899999874

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.59  E-value=3.4e-15  Score=102.61  Aligned_cols=58  Identities=41%  Similarity=0.602  Sum_probs=54.4

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          192 KDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       192 ~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~g   58 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAG   58 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            4899999999999999999999999999999999999999999999999999999863

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.58  E-value=7.7e-15  Score=121.68  Aligned_cols=122  Identities=18%  Similarity=0.213  Sum_probs=93.1

Q ss_pred             cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCc---HHHHHHHHhcCCCcHHHHHHHHhcCC
Q 025512          106 FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQ---IEERMAKIKEDPSLKPILDEIESGGP  182 (251)
Q Consensus       106 ~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~L~~~~~  182 (251)
                      ++..+.+.++.+...           |..    ..+..+++.+.+++..+.   ...+.++..   +..+++++|+..+ 
T Consensus        36 ~~~~~~t~l~~A~~~-----------g~~----~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~---g~~~~v~~Ll~~g-   96 (299)
T 1s70_B           36 VKFDDGAVFLAACSS-----------GDT----EEVLRLLERGADINYANVDGLTALHQACID---DNVDMVKFLVENG-   96 (299)
T ss_dssp             CEECHHHHHHHHHHH-----------TCH----HHHHHHHHHCCCTTCBCTTCCBHHHHHHHT---TCHHHHHHHHHTT-
T ss_pred             cccCCccHHHHHHHc-----------CCH----HHHHHHHHcCCCCcccCCCCCCHHHHHHHc---CCHHHHHHHHHCC-
Confidence            445566666665544           333    566777777777765543   444444444   4567777777776 


Q ss_pred             CccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          183 SAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       183 ~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                       .+++..|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..++.+++++|+.
T Consensus        97 -a~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~  160 (299)
T 1s70_B           97 -ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVN  160 (299)
T ss_dssp             -CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHH
T ss_pred             -CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHh
Confidence             6778889999999999999999999999999999999999999999999999999998887765

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.57  E-value=1.5e-15  Score=118.26  Aligned_cols=75  Identities=20%  Similarity=0.060  Sum_probs=67.3

Q ss_pred             HHHHHHHHhcCCCccccccCCCCchHHHHHHHcCC------HHHHHHHHHCCCCCCCCCCCCC-cHHHHHHHcC-----C
Q 025512          171 KPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGR------KECVALLLENGAAVTLQNMDGK-TPIDVAKLNS-----Q  238 (251)
Q Consensus       171 ~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~------~~~v~~Ll~~Gad~~~~d~~G~-TpL~~A~~~g-----~  238 (251)
                      .+++++|+..|  +++|.+|..|+||||+|+..|+      .++|++|+++|+|++.+|..|+ ||||+|+..+     +
T Consensus        55 ~~iv~~Ll~~G--advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~  132 (186)
T 3t8k_A           55 YKISMFLINKG--ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEM  132 (186)
T ss_dssp             HHHHHHHHHTT--CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHH
T ss_pred             HHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhH
Confidence            46888888887  7899999999999999999997      6899999999999999999999 9999999955     3


Q ss_pred             HHHHHHHHh
Q 025512          239 HDVLKLLEK  247 (251)
Q Consensus       239 ~~iv~~Ll~  247 (251)
                      .+++++|++
T Consensus       133 ~~iv~~Ll~  141 (186)
T 3t8k_A          133 IPLYKLIFS  141 (186)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            568999987

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.56  E-value=2.4e-14  Score=114.44  Aligned_cols=135  Identities=16%  Similarity=0.191  Sum_probs=77.3

Q ss_pred             hchHHHHHHHHcCCcchHHHHHhhhhcc-------CChHHHHHHHhcCCCCcc----CcHHHHHHHHhcCCCcHHHHHHH
Q 025512          109 TQYYSTMQQVMQNPQFMTMAERLGNALM-------QDPSMSHMMESLTNPTKK----DQIEERMAKIKEDPSLKPILDEI  177 (251)
Q Consensus       109 ~g~~~l~~~l~~~~~~~~~a~~~~~~ll-------~~~~~~~ll~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~L  177 (251)
                      .|+.++++.|++.+..+...+..+...+       +...+..+++.+.+....    +....+.++..++   .+++++|
T Consensus        19 ~g~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~---~~~v~~L   95 (240)
T 3eu9_A           19 YGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH---LSMVVQL   95 (240)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC---HHHHHHH
T ss_pred             cCChHHHHHHHHcCCCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC---HHHHHHH
Confidence            4556677777766554432222221110       114555556665554432    2334444444433   4455555


Q ss_pred             HhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC-HHHHHHHHhC
Q 025512          178 ESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ-HDVLKLLEKD  248 (251)
Q Consensus       178 ~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~-~~iv~~Ll~~  248 (251)
                      +..+  .+++..+..|+||||+|+..|+.+++++|+++|++++.++..|+||||+|+..++ .+++++|+++
T Consensus        96 l~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~  165 (240)
T 3eu9_A           96 MKYG--ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF  165 (240)
T ss_dssp             HHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHT
T ss_pred             HHcC--CCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhc
Confidence            5554  4456666777777777777777777777777777777777777777777775554 5666666654

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.56  E-value=2.2e-14  Score=103.27  Aligned_cols=87  Identities=31%  Similarity=0.426  Sum_probs=74.2

Q ss_pred             HHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 025512          158 EERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS  237 (251)
Q Consensus       158 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  237 (251)
                      ..+.++..++   .+++++|+..+  .+++..|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|
T Consensus         5 ~L~~A~~~~~---~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~   79 (126)
T 1n0r_A            5 PLHLAARNGH---LEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNG   79 (126)
T ss_dssp             HHHHHHHHTC---HHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTT
T ss_pred             HHHHHHHcCc---HHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Confidence            3444444443   56666677665  567888999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCC
Q 025512          238 QHDVLKLLEKDA  249 (251)
Q Consensus       238 ~~~iv~~Ll~~~  249 (251)
                      +.+++++|+++.
T Consensus        80 ~~~~~~~Ll~~g   91 (126)
T 1n0r_A           80 HLEVVKLLLEAG   91 (126)
T ss_dssp             CHHHHHHHHHTT
T ss_pred             hHHHHHHHHHcC
Confidence            999999999863

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.55  E-value=1.8e-15  Score=114.07  Aligned_cols=88  Identities=18%  Similarity=0.125  Sum_probs=75.6

Q ss_pred             CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCc-HHHHH
Q 025512          155 DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKT-PIDVA  233 (251)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~T-pL~~A  233 (251)
                      +....+.++..++   .+++++|+..+  .+++..|..|+||||+|+ .|+.+++++|+++|++++.+|..|+| |||+|
T Consensus        12 ~~t~L~~A~~~g~---~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~ttpL~~A   85 (156)
T 1bi7_B           12 SADWLATAAARGR---VEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDA   85 (156)
T ss_dssp             STTHHHHHHHHTC---HHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHH
T ss_pred             chHHHHHHHHcCC---HHHHHHHHHcC--CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHH
Confidence            3445566665544   56777777776  678889999999999985 99999999999999999999999999 99999


Q ss_pred             HHcCCHHHHHHHHhC
Q 025512          234 KLNSQHDVLKLLEKD  248 (251)
Q Consensus       234 ~~~g~~~iv~~Ll~~  248 (251)
                      +..|+.+++++|+++
T Consensus        86 ~~~~~~~~v~~Ll~~  100 (156)
T 1bi7_B           86 AREGFLDTLVVLHRA  100 (156)
T ss_dssp             HHHTCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHc
Confidence            999999999999975

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.54  E-value=4.6e-15  Score=125.37  Aligned_cols=106  Identities=15%  Similarity=0.121  Sum_probs=81.2

Q ss_pred             hHHHHHHHhcCCCCccC---cHHHHHHHHhcC----CCcHHHHHHHHhcCCCccccccCCCCchHHHHHHH----cCCHH
Q 025512          139 PSMSHMMESLTNPTKKD---QIEERMAKIKED----PSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAG----YGRKE  207 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~---~~~~~~~~~~~~----~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~----~g~~~  207 (251)
                      ..+..+++.+++++..+   ....+.++..++    ..+..+++++.     .+++.+|..|+||||+|+.    .|+.+
T Consensus       145 ~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~-----~~~~~~d~~g~tpLh~A~~~~~~~g~~~  219 (327)
T 1sw6_A          145 ELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY-----PCLILEDSMNRTILHHIIITSGMTGCSA  219 (327)
T ss_dssp             HHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG-----GGGGEECTTCCCHHHHHHHHHTSTTCHH
T ss_pred             HHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhh-----ccccCCCCCCCCHHHHHHHHccccccHH
Confidence            56777888888887654   445566665544    23334443332     3578889999999999999    89999


Q ss_pred             HHHHHHHCCC---------------------------------------------CCCCCCCCCCcHHHHHHHcCCHHHH
Q 025512          208 CVALLLENGA---------------------------------------------AVTLQNMDGKTPIDVAKLNSQHDVL  242 (251)
Q Consensus       208 ~v~~Ll~~Ga---------------------------------------------d~~~~d~~G~TpL~~A~~~g~~~iv  242 (251)
                      ++++|++.++                                             +++.+|..|+||||+|+..|+.++|
T Consensus       220 ~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~n~~d~~G~TpLh~A~~~g~~~~v  299 (327)
T 1sw6_A          220 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV  299 (327)
T ss_dssp             HHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHH
T ss_pred             HHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHcCCHHHH
Confidence            9999988753                                             6888899999999999999999999


Q ss_pred             HHHHhCC
Q 025512          243 KLLEKDA  249 (251)
Q Consensus       243 ~~Ll~~~  249 (251)
                      ++|+++.
T Consensus       300 ~~Ll~~G  306 (327)
T 1sw6_A          300 DALLDYG  306 (327)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHcC
Confidence            9999863

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.53  E-value=4.9e-15  Score=125.19  Aligned_cols=76  Identities=17%  Similarity=0.216  Sum_probs=63.9

Q ss_pred             cHHHHHHHHhcCCCccccc-cCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC---HHHHHHH
Q 025512          170 LKPILDEIESGGPSAMMKY-WNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ---HDVLKLL  245 (251)
Q Consensus       170 ~~~~l~~L~~~~~~~~v~~-~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~---~~iv~~L  245 (251)
                      ..+++++|...+  .++|. +|..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+   .++++.|
T Consensus       109 ~~~~~~~l~~~g--~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~l  186 (327)
T 1sw6_A          109 LQEVNDAFPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEAL  186 (327)
T ss_dssp             HHHHHHHCTTSC--CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHH
T ss_pred             HHHHHHHHHhcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhcccccHHHHHHH
Confidence            345666666665  67888 89999999999999999999999999999999999999999999999988   4444444


Q ss_pred             Hh
Q 025512          246 EK  247 (251)
Q Consensus       246 l~  247 (251)
                      ++
T Consensus       187 l~  188 (327)
T 1sw6_A          187 LD  188 (327)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.53  E-value=5.7e-14  Score=120.47  Aligned_cols=188  Identities=18%  Similarity=0.206  Sum_probs=113.7

Q ss_pred             cccccccccCCC---hhHHHHHHHHhcCchHHHHHHHHHhhhcCCCCCCCCCccchhchHHHHHHHHcCCcchHHHHHh-
Q 025512           56 FDFSAMSGLLND---PSIKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERL-  131 (251)
Q Consensus        56 ~~~s~~~sl~~d---p~~~~la~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~~~a~~~-  131 (251)
                      +|+|+|+|+..|   ++.+++++.+| |..+|+++|..-.......+.   |..........+........++...... 
T Consensus        80 ~~~s~v~s~~~d~w~~~~~~~~~~~g-n~~~n~~~e~~~~~~~~~kp~---~~~~~~~re~fIr~KY~~k~f~~~l~~~~  155 (368)
T 3jue_A           80 VHFSKVRSLTLDSWEPELVKLMCELG-NVIINQIYEARVEAMAVKKPG---PSCSRQEKEAWIHAKYVEKKFLTKLPEIR  155 (368)
T ss_dssp             TTTCCEEETTTSCCCHHHHHHHHHSC-HHHHHHHHTTTTTTTTCCCCC---TTSCHHHHHHHHHHHHTSCTTCCSCC---
T ss_pred             CCcCeeEEeecccccHHHHHHHHHHc-cHHHHHHHHhhcccccCcCCC---CCCCHHHHHHHHHHHHHhhcccccchhhh
Confidence            689999999887   88899999998 999999988622211100110   1112222222333333333322110000 


Q ss_pred             ----h--hhccCC---hHHHHHHH--------hcCCCCccCcHHHHHHHHhcCC-CcHHHHHHHHhcCCCccccccC--C
Q 025512          132 ----G--NALMQD---PSMSHMME--------SLTNPTKKDQIEERMAKIKEDP-SLKPILDEIESGGPSAMMKYWN--D  191 (251)
Q Consensus       132 ----~--~~ll~~---~~~~~ll~--------~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~L~~~~~~~~v~~~d--~  191 (251)
                          +  ...-+.   |.....-.        ..................+... ...+++.+|+..+  .+++..+  .
T Consensus       156 ~~~~~~~~~r~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~L~~Aa~~~g~~~~v~~LL~~G--advn~~~~~~  233 (368)
T 3jue_A          156 GRRGGRGRPRGQPPVPPKPSIRPRPGSLRSKPEPPSEDLGSLHPGALLFRASGHPPSLPTMADALAHG--ADVNWVNGGQ  233 (368)
T ss_dssp             -----------------------------------------CCHHHHHHHHTSSSCCHHHHHHHHHTT--CCTTCCCTTT
T ss_pred             hccccccCcccCCCCCCCcccCCCCccccccccccccccccCCCCcHHHHHHHccCCHHHHHHHHHcC--CCCCcccccc
Confidence                0  000000   00000000        0000011111122233333333 6677777788776  5677777  8


Q ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          192 KDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       192 ~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      .|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|+..|+.++|++|+++.
T Consensus       234 ~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~~~~v~~LL~~G  291 (368)
T 3jue_A          234 DNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRG  291 (368)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCcHHHHHHHHHCc
Confidence            8999999999999999999999999999999999999999999999999999999863

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.50  E-value=7.3e-14  Score=115.42  Aligned_cols=83  Identities=23%  Similarity=0.296  Sum_probs=68.0

Q ss_pred             cCCCcHHHHHHHHhcCCCcc----ccccCCCCchHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 025512          166 EDPSLKPILDEIESGGPSAM----MKYWNDKDNTALHYAAGY---GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ  238 (251)
Q Consensus       166 ~~~~~~~~l~~L~~~~~~~~----v~~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~  238 (251)
                      ...+...+. .++..+....    ++..|..|+||||+|+..   |+.+++++|+++|++++.+|..|+||||+|+..|+
T Consensus       139 ~~~d~~~~~-~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh~A~~~g~  217 (278)
T 1dcq_A          139 KTRDIFGLL-QAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDN  217 (278)
T ss_dssp             HTTCHHHHH-HHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTC
T ss_pred             hhcccHHHH-HHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHHHHHHcCC
Confidence            344444444 3444443222    555688999999999999   89999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCC
Q 025512          239 HDVLKLLEKDA  249 (251)
Q Consensus       239 ~~iv~~Ll~~~  249 (251)
                      .++|++|+++.
T Consensus       218 ~~~v~~Ll~~g  228 (278)
T 1dcq_A          218 AECLKLLLRGK  228 (278)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHcC
Confidence            99999999863

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.48  E-value=7.5e-14  Score=98.97  Aligned_cols=64  Identities=30%  Similarity=0.393  Sum_probs=57.1

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          186 MKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       186 v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ....|.+|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.+++++|+++.
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~g   80 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAG   80 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence            3445788999999999999999999999999999999999999999999999999999999863

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.46  E-value=1.4e-13  Score=122.69  Aligned_cols=77  Identities=26%  Similarity=0.282  Sum_probs=66.2

Q ss_pred             HHHHHHHHhcCCCcccccc------CCCCchHHHHHHH---cCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHH
Q 025512          171 KPILDEIESGGPSAMMKYW------NDKDNTALHYAAG---YGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV  241 (251)
Q Consensus       171 ~~~l~~L~~~~~~~~v~~~------d~~G~TpLh~Aa~---~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~i  241 (251)
                      ...+..|+..|  .++|..      |..|+||||+||.   .|+.++|++|+++|+++|.+|..|+||||+|+..|+.++
T Consensus       145 ~~~v~~ll~~g--~~~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g~TpLh~A~~~g~~~~  222 (497)
T 3lvq_E          145 LLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDC  222 (497)
T ss_dssp             HHHHHHHHHTT--CCSSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSSCCHHHHHTTTTCHHH
T ss_pred             HHHHHHHHhhc--ccccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCCCcHHHHHHHcCCHHH
Confidence            34444455555  456655      8899999999976   999999999999999999999999999999999999999


Q ss_pred             HHHHHhCC
Q 025512          242 LKLLEKDA  249 (251)
Q Consensus       242 v~~Ll~~~  249 (251)
                      |++|+++.
T Consensus       223 v~~Ll~~g  230 (497)
T 3lvq_E          223 LKLLLKGR  230 (497)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHHcC
Confidence            99999863

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.46  E-value=7.5e-14  Score=99.46  Aligned_cols=62  Identities=37%  Similarity=0.526  Sum_probs=59.1

Q ss_pred             ccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          188 YWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       188 ~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ++|.+|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..++.+++++|+++.
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g   65 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKG   65 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcC
Confidence            46889999999999999999999999999999999999999999999999999999999863

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.45  E-value=3.2e-13  Score=112.82  Aligned_cols=80  Identities=26%  Similarity=0.358  Sum_probs=66.7

Q ss_pred             CCCcHHHHHHHHhcCCCccccc------cCCCCchHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 025512          167 DPSLKPILDEIESGGPSAMMKY------WNDKDNTALHYAAGY---GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS  237 (251)
Q Consensus       167 ~~~~~~~l~~L~~~~~~~~v~~------~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  237 (251)
                      ..+...+.. |+..+  .+++.      .+..|+||||+|+..   |+.++|++|+++|++++.+|..|+||||+|+..|
T Consensus       161 ~g~~~~v~~-ll~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~TpLh~A~~~g  237 (301)
T 2b0o_E          161 NRDLLSVLE-AFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYN  237 (301)
T ss_dssp             TTCHHHHHH-HHHTT--CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCCCHHHHHHHTT
T ss_pred             ccCHHHHHH-HHhcC--CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcC
Confidence            344444443 44444  44555      588999999999997   8999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhCC
Q 025512          238 QHDVLKLLEKDA  249 (251)
Q Consensus       238 ~~~iv~~Ll~~~  249 (251)
                      +.++|++|+++.
T Consensus       238 ~~~~v~~Ll~~g  249 (301)
T 2b0o_E          238 QPDCLKLLLKGR  249 (301)
T ss_dssp             CHHHHHHHHHTT
T ss_pred             CHHHHHHHHHcC
Confidence            999999999863

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.39  E-value=2.5e-14  Score=123.10  Aligned_cols=106  Identities=16%  Similarity=0.143  Sum_probs=74.9

Q ss_pred             hHHHHHHHhcC------CCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCC-ccccccCCCCchHHHHHHHcCCHHHHHH
Q 025512          139 PSMSHMMESLT------NPTKKDQIEERMAKIKEDPSLKPILDEIESGGPS-AMMKYWNDKDNTALHYAAGYGRKECVAL  211 (251)
Q Consensus       139 ~~~~~ll~~~~------~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~-~~v~~~d~~G~TpLh~Aa~~g~~~~v~~  211 (251)
                      ..+..+++.+.      ..+..+....+.++   ..+..+++++|+..+.. ..++..+.+ +||||+||..|+.++|++
T Consensus       106 e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa---~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~Aa~~G~~eiv~~  181 (376)
T 2aja_A          106 SALDTLCLLLTSDEIVKVIQAENYQAFRLAA---ENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRLAAENGHLHVLNR  181 (376)
T ss_dssp             HHHHHHTTC--CCSSCC--CHHHHHHHHHHH---HTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHhccCCCCHHHHHH---HcCCHHHHHHHHhCCCCccccccCCCC-CCHHHHHHHCCCHHHHHH
Confidence            44555555554      22333333334444   44557778888887632 012222233 999999999999999999


Q ss_pred             HHHCCCCCCC--CCCCCCcHHHHHH-HcCCHHHHHHHHhC
Q 025512          212 LLENGAAVTL--QNMDGKTPIDVAK-LNSQHDVLKLLEKD  248 (251)
Q Consensus       212 Ll~~Gad~~~--~d~~G~TpL~~A~-~~g~~~iv~~Ll~~  248 (251)
                      |+++|++++.  +|..|+||||+|+ ..|+.+||++|+++
T Consensus       182 Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~  221 (376)
T 2aja_A          182 LCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDC  221 (376)
T ss_dssp             HHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTS
T ss_pred             HHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhC
Confidence            9999999887  8889999999999 99999999999875

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.28  E-value=3.2e-13  Score=116.20  Aligned_cols=125  Identities=11%  Similarity=0.102  Sum_probs=86.0

Q ss_pred             hhchHHHHHHHHcCCc------chH--------HHHHhhhhccCChHHHHHHHhcCC-----CCccCcHHHHHHHHhcCC
Q 025512          108 TTQYYSTMQQVMQNPQ------FMT--------MAERLGNALMQDPSMSHMMESLTN-----PTKKDQIEERMAKIKEDP  168 (251)
Q Consensus       108 ~~g~~~l~~~l~~~~~------~~~--------~a~~~~~~ll~~~~~~~ll~~~~~-----~~~~~~~~~~~~~~~~~~  168 (251)
                      ..|+.++++.|++.++      .++        .+...|..    ..+..+++.+++     ....+   .+...++...
T Consensus       101 ~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~----eiv~~Ll~~gad~~~~~i~~~~---~TpLh~Aa~~  173 (376)
T 2aja_A          101 ITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHL----HVLNRLCELAPTEIMAMIQAEN---YHAFRLAAEN  173 (376)
T ss_dssp             HHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCH----HHHHHHHHSCTTTHHHHHSHHH---HHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCH----HHHHHHHhCCCCccccccCCCC---CCHHHHHHHC
Confidence            3566677777776654      111        12222322    566666777653     22222   3333334444


Q ss_pred             CcHHHHHHHHhcCCCccccc--cCCCCchHHHHHH-HcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHH
Q 025512          169 SLKPILDEIESGGPSAMMKY--WNDKDNTALHYAA-GYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL  245 (251)
Q Consensus       169 ~~~~~l~~L~~~~~~~~v~~--~d~~G~TpLh~Aa-~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~L  245 (251)
                      +..+++++|+..+  .+++.  .|..|+||||+|+ ..|+.++|++|+++|++       |.||||+|+..|+.+++++|
T Consensus       174 G~~eiv~~Ll~~g--a~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga~-------~~taL~~Aa~~g~~evv~lL  244 (376)
T 2aja_A          174 GHLHVLNRLCELA--PTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM-------LAYAEIHEFEYGEKYVNPFI  244 (376)
T ss_dssp             TCHHHHHHHHHSC--GGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHH-------HHHHHHCTTTTTTTTHHHHH
T ss_pred             CCHHHHHHHHHcC--CccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCCc-------cchHHHHHHHCCCHHHHHHH
Confidence            5677888888887  45555  7888999999999 99999999999998853       89999999999999999999


Q ss_pred             HhC
Q 025512          246 EKD  248 (251)
Q Consensus       246 l~~  248 (251)
                      +++
T Consensus       245 ~~~  247 (376)
T 2aja_A          245 ARH  247 (376)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-17
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	1e-06
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-14
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-11
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-07
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	1e-05
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	5e-04
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	8e-13
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-07
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-05
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	3e-12
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	1e-07
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	9e-12
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	0.002
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	6e-11
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-06
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-10
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	0.001
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	9e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-08
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	7e-06
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	0.004
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-09
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	8e-07
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-06
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-08
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	1e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	7e-04
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	8e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-08
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	1e-06
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	8e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	1e-06
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	3e-06
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	0.003
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	6e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.003
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	6e-04
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	6e-04

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 75.5 bits (184), Expect = 9e-17
 Identities = 15/64 (23%), Positives = 32/64 (50%)

Query: 184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
           +     ++   T +  AA  GR E V  L++ GA+V   +    T   +A+ N+ H+++ 
Sbjct: 212 SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVD 271

Query: 244 LLEK 247
           + ++
Sbjct: 272 IFDR 275

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 45.9 bits (107), Expect = 1e-06
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 17/86 (19%)

Query: 172 PILDEIESGGPSAMMKYW-----NDKDN----TALHYAAGYGRKECVALLLEN------- 215
           PI    E+ G  A+ +       N  D     T LH+ A     E    L+ +       
Sbjct: 3   PIKLHTEAAGSYAITEPITRESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIA 62

Query: 216 -GAAVTLQNMDGKTPIDVAKLNSQHD 240
            GA V   + D  TP+ +A L  +  
Sbjct: 63  AGADVNAMDCDENTPLMLAVLARRRR 88

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.6 bits (169), Expect = 2e-14
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 3/65 (4%)

Query: 185 MMKYWNDKDN---TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV 241
                N K     + LH AA  G  + V LLL+NGA+    + DG TP+ +AK      V
Sbjct: 319 HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISV 378

Query: 242 LKLLE 246
             +L+
Sbjct: 379 TDVLK 383

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.0 bits (144), Expect = 5e-11
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           T LH A+  G    V  LL+ GA+  + N+  +TP+ +A      +V K L
Sbjct: 2   TPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKYL 52

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 5e-11
 Identities = 21/56 (37%), Positives = 28/56 (50%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
           N K  T LH AA  G  E    LL+N A V  +  D +TP+  A      +++KLL
Sbjct: 30  NVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLL 85

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 5e-07
 Identities = 23/64 (35%), Positives = 30/64 (46%)

Query: 184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
           A       K  T LH AA YG+     LLLE  A       +G TP+ VA  ++  D++K
Sbjct: 123 ASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK 182

Query: 244 LLEK 247
           LL  
Sbjct: 183 LLLP 186

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 1e-05
 Identities = 20/61 (32%), Positives = 25/61 (40%)

Query: 185 MMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 244
                + +  T LH AA  G  E VALLL   A   L N  G TP+ +        V  +
Sbjct: 223 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 282

Query: 245 L 245
           L
Sbjct: 283 L 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 18/62 (29%), Positives = 28/62 (45%)

Query: 184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
            M+        T LH A+ YG  + V  LL++ A V  +   G +P+  A      D++ 
Sbjct: 288 VMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVT 347

Query: 244 LL 245
           LL
Sbjct: 348 LL 349

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 5e-04
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
                T LH A  +   + V LLL  G +      +G TP+ +A   +Q +V + L
Sbjct: 162 GKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSL 217

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 64.4 bits (155), Expect = 8e-13
 Identities = 19/68 (27%), Positives = 32/68 (47%)

Query: 184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
             +   +    T LH AA +G++E   +L+EN   +   N  G+T  DVA  +    + +
Sbjct: 223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADEDILGYLEE 282

Query: 244 LLEKDAFL 251
           L +K   L
Sbjct: 283 LQKKQNLL 290

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.6 bits (114), Expect = 2e-07
 Identities = 16/49 (32%), Positives = 22/49 (44%)

Query: 193 DNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDV 241
           D      A   G  E V  LLE GA +   N+DG T +  A ++   D+
Sbjct: 40  DGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 42.4 bits (98), Expect = 2e-05
 Identities = 26/136 (19%), Positives = 55/136 (40%), Gaps = 1/136 (0%)

Query: 110 QYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPS 169
            Y    + ++     +      G+  +       M E L N   +  ++   A+ +E+  
Sbjct: 117 GYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERI 176

Query: 170 LKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP 229
           +     +  + G    +++      TALH AA  G  E + LL++    V +++ DG TP
Sbjct: 177 MLRDARQWLNSGHINDVRHAKS-GGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTP 235

Query: 230 IDVAKLNSQHDVLKLL 245
           +  A    + +  ++L
Sbjct: 236 LHAAAHWGKEEACRIL 251

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (149), Expect = 3e-12
 Identities = 18/59 (30%), Positives = 30/59 (50%)

Query: 185 MMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
            +       ++ALH A+G G    V  L+ +GA  +L+N    TP+ VA+     D+L+
Sbjct: 169 NVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR 227

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.1 bits (115), Expect = 1e-07
 Identities = 12/53 (22%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 191 DKDNTALHYAAGYGRKECVALLL----ENGAAVTLQNMDGKTPIDVAKLNSQH 239
           +  +T LH A   G    V  L+    + G  + + N   +TP+ +A + +  
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLP 53

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 60.2 bits (144), Expect = 9e-12
 Identities = 21/62 (33%), Positives = 30/62 (48%)

Query: 185 MMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 244
                +DKD T L  AA  G  E    LL+N A   + +   + P DVA     HD+++L
Sbjct: 148 NRDAQDDKDETPLFLAAREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRL 207

Query: 245 LE 246
           L+
Sbjct: 208 LD 209

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 206 KECVALLLENGAAV-TLQNMDGKTPIDVAKLNSQHDVLKLL 245
            + ++ LL  GA +    +  G+T + +A   ++ D  K L
Sbjct: 2   AQVISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 59.3 bits (142), Expect = 6e-11
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA 233
           +   +T L+ AA  G    V  LL+ GA   + N  G  P+D  
Sbjct: 256 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFG 299

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.4 bits (106), Expect = 3e-06
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 191 DKD-NTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH 239
           D+  NT LH+       E V  L+++G+     +  G++ +  A  +  +
Sbjct: 104 DEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNN 153

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.3 bits (137), Expect = 1e-10
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)

Query: 185 MMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 244
                + + NT LH A    R E   LL+  GA++ ++N + KTP+ VAK      +LK 
Sbjct: 161 STNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVAK-GGLGLILKR 219

Query: 245 L 245
           +
Sbjct: 220 M 220

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (115), Expect = 1e-07
 Identities = 16/47 (34%), Positives = 21/47 (44%)

Query: 184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPI 230
           A +   N    T LHYAA   R E   +LLE GA    ++    T +
Sbjct: 94  AQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAM 140

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 0.001
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 193 DNTALHYAAGYGRKECVA-LLLENGAAVTLQNMDGKTPIDVAKLNSQH 239
            N  +   A  G+ E +   +L + +  T  + D +T +  A      
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKSLATRTDQDSRTALHWACSAGHT 50

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 9e-10
 Identities = 18/61 (29%), Positives = 26/61 (42%)

Query: 185 MMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 244
           + K       T LH A        + LLL+ GA  T +   G+TP+  A L     + +L
Sbjct: 184 LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARL 243

Query: 245 L 245
           L
Sbjct: 244 L 244

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (121), Expect = 2e-08
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 4/53 (7%)

Query: 191 DKD-NTALHYAAGYGRKECVALLLENGA---AVTLQNMDGKTPIDVAKLNSQH 239
            +D +TALH A  +  +  +  LL   A    + LQN  G+T + +A +  + 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 7e-06
 Identities = 9/37 (24%), Positives = 11/37 (29%), Gaps = 3/37 (8%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDG 226
                T L  A          LL  +GA    +  DG
Sbjct: 222 MYGGRTPLGSALLRPNPILARLLRAHGAP---EPEDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.5 bits (80), Expect = 0.004
 Identities = 19/69 (27%), Positives = 25/69 (36%)

Query: 177 IESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN 236
           +        +   ND   TALH AA  G    V  L   GA V +    G T + +A   
Sbjct: 29  LGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRV 88

Query: 237 SQHDVLKLL 245
             H    +L
Sbjct: 89  RAHTCACVL 97

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 1e-09
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQHDVLKLL 245
            ++  T L  A        V  LLE     +   + DGKT + +A       + +LL
Sbjct: 216 GERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELL 272

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (116), Expect = 1e-07
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 192 KDNTALHYAAGYGRKECVALLLENGAAVTLQ-NMDGKTPIDVAKLNSQHDVLKL 244
           +DN  L  A      + V  LLE GA V  Q    G TP+  A   S+ D+++L
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL 57

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (109), Expect = 8e-07
 Identities = 9/35 (25%), Positives = 15/35 (42%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNM 224
           +    TAL  A     K+   LL + GA+    ++
Sbjct: 250 DSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 7e-06
 Identities = 30/168 (17%), Positives = 50/168 (29%), Gaps = 12/168 (7%)

Query: 94  LHGA--NAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSH----MMES 147
           LH A   + E I +         + +         +A   G+  +    +S         
Sbjct: 43  LHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD 102

Query: 148 LTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKE 207
               T   +              K   +           +       TAL  AA  G  E
Sbjct: 103 FYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE 162

Query: 208 CVALLL-ENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-----LLEKDA 249
            + +LL E GA V   +  G+  +  A L+S    ++     LL+  A
Sbjct: 163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGA 210

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 3e-08
 Identities = 11/47 (23%), Positives = 18/47 (38%), Gaps = 1/47 (2%)

Query: 194 NTALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTPIDVAKLNSQH 239
           N  LH A        V  LL    + +  ++ DG+ P+  +     H
Sbjct: 1   NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAH 47

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 1e-07
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 4/62 (6%)

Query: 185 MMKYWNDKDNTALHYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
            + + + +  T L +A   G  +   LL+E  GA   L +  G    DVA       V K
Sbjct: 164 AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVA---LNEQVKK 220

Query: 244 LL 245
             
Sbjct: 221 FF 222

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 51.0 bits (121), Expect = 4e-08
 Identities = 22/113 (19%), Positives = 37/113 (32%), Gaps = 10/113 (8%)

Query: 147 SLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWND------KDNTALHYA 200
           SL   + K+ I   +   K    ++ +L    +       + W+D      K       A
Sbjct: 38  SLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVA 97

Query: 201 AGYGRK---ECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK-LLEKDA 249
           A  G     + + LLL +   V +   +      +A  N    VL  L E   
Sbjct: 98  AITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP 150

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 43.7 bits (102), Expect = 1e-05
 Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 2/58 (3%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMD--GKTPIDVAKLNSQHDVLKLL 245
             ++  A   AA  G    +  L E      +  +         +A  N    VL  L
Sbjct: 123 QAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRL 180

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 43.3 bits (101), Expect = 1e-05
 Identities = 8/62 (12%), Positives = 12/62 (19%), Gaps = 5/62 (8%)

Query: 189 WNDKDNTALHYAAGYGRKECVALLLENGAAVTLQN-----MDGKTPIDVAKLNSQHDVLK 243
                   L         + +  LL       L        D    + +A          
Sbjct: 275 QGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACA 334

Query: 244 LL 245
           LL
Sbjct: 335 LL 336

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.9 bits (87), Expect = 7e-04
 Identities = 9/32 (28%), Positives = 12/32 (37%)

Query: 190 NDKDNTALHYAAGYGRKECVALLLENGAAVTL 221
               N  L  A   G +   ALLL   + + L
Sbjct: 314 PGDANELLRLALRLGNQGACALLLSIPSVLAL 345

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 37.6 bits (86), Expect = 8e-04
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 181 GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAV---TLQNMDGKTPIDVAKLNS 237
            P+ +M     ++  A   AA  G    +  L E         +Q  +       A    
Sbjct: 149 APTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRG 208

Query: 238 QHDVLKLL 245
            H+V+  L
Sbjct: 209 HHNVINFL 216

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (118), Expect = 4e-08
 Identities = 27/198 (13%), Positives = 54/198 (27%), Gaps = 6/198 (3%)

Query: 54  NPFDFSAMSGLLNDPSIKELAEQIAKDPAFNSMAEQLQKT-LHGANAEESIPQFDTTQYY 112
           +    + +          E+  Q+  D AF +    LQ+T LH A         +     
Sbjct: 4   SFLHLAIIHE--EKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 61

Query: 113 STMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKP 172
               ++        +        +    +     +  +     +            +   
Sbjct: 62  GCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIH 121

Query: 173 ILDEIESGGP---SAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP 229
               I        + +         TALH A      + V+LLL+ GA V      G +P
Sbjct: 122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSP 181

Query: 230 IDVAKLNSQHDVLKLLEK 247
             +        + + L +
Sbjct: 182 YQLTWGRPSTRIQQQLGQ 199

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 4e-06
 Identities = 11/50 (22%), Positives = 23/50 (46%), Gaps = 4/50 (8%)

Query: 194 NTALHYAAGYGR----KECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH 239
           ++ LH A  +       E +  +  + A +  QN   +TP+ +A + +Q 
Sbjct: 3   DSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQP 52

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (89), Expect = 2e-04
 Identities = 5/52 (9%), Positives = 11/52 (21%), Gaps = 2/52 (3%)

Query: 184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGA--AVTLQNMDGKTPIDVA 233
           A +     +  +      G         L +        L   + +   D  
Sbjct: 169 ADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTE 220

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.8 bits (104), Expect = 1e-06
 Identities = 20/63 (31%), Positives = 34/63 (53%)

Query: 184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK 243
           A +   +    TALH+A  +  +E V LL++ GA V  Q+   KT  D++  N   D+ +
Sbjct: 91  ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAE 150

Query: 244 LLE 246
           +L+
Sbjct: 151 ILQ 153

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.5 bits (90), Expect = 8e-05
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 194 NTALHYAAGYGRKECVALLLENGAAVTLQNM 224
              L  AA  G+ + V +L+ NGA  T   +
Sbjct: 3   GKKLLEAARAGQDDEVRILMANGAPFTTDWL 33

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (104), Expect = 1e-06
 Identities = 13/32 (40%), Positives = 18/32 (56%)

Query: 185 MMKYWNDKDNTALHYAAGYGRKECVALLLENG 216
            + + N K +TA   A  YGR E V+L+  NG
Sbjct: 125 NVGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (103), Expect = 2e-06
 Identities = 12/33 (36%), Positives = 15/33 (45%)

Query: 195 TALHYAAGYGRKECVALLLENGAAVTLQNMDGK 227
             L  AA  G  E +  LL+N   V  QN  G+
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGR 35

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 8/34 (23%), Positives = 14/34 (41%)

Query: 184 AMMKYWNDKDNTALHYAAGYGRKECVALLLENGA 217
           A ++  N+   T L  A     + C  LL +  +
Sbjct: 105 ASIEIANESGETPLDIAKRLKHEHCEELLTQALS 138

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 36/94 (38%)

Query: 190 NDKDNTALHYAA---GYGRKECVALLLENGAAV--------------------------- 219
           ++ D TALH A           V  L++N   +                           
Sbjct: 42  HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 101

Query: 220 ------TLQNMDGKTPIDVAKLNSQHDVLKLLEK 247
                  + N  G+TP+D+AK        +LL +
Sbjct: 102 RGKASIEIANESGETPLDIAKRLKHEHCEELLTQ 135

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 13/145 (8%), Positives = 35/145 (24%), Gaps = 5/145 (3%)

Query: 70  IKELAEQIAKDPAFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAE 129
           ++E+   + ++        +  KT        S               V        + +
Sbjct: 15  VQEVRRLLHRELVHPDALNRFGKTALQVMMFGSTAIALELLKQGASPNVQDTSGTSPVHD 74

Query: 130 RLGNALMQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYW 189
                 +    +     +  N             ++E  +              + +   
Sbjct: 75  AARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-----AESDLHRR 129

Query: 190 NDKDNTALHYAAGYGRKECVALLLE 214
           + +  T L  A   G ++ V +L  
Sbjct: 130 DARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 6e-04
 Identities = 11/39 (28%), Positives = 13/39 (33%), Gaps = 1/39 (2%)

Query: 192 KDNTALHYAAGYGRKECVALLLE-NGAAVTLQNMDGKTP 229
           +    L  AA  G  + V  LL          N  GKT 
Sbjct: 1   RAGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTA 39

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 11/61 (18%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 185 MMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKL 244
            +   +      +H A   G    V+ L    + +  ++  G TP+++A      D++ +
Sbjct: 93  DVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDI 151

Query: 245 L 245
           L
Sbjct: 152 L 152

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (83), Expect = 6e-04
 Identities = 5/34 (14%), Positives = 10/34 (29%), Gaps = 2/34 (5%)

Query: 185 MMKYWNDKDNTALHYAAGYGRKECVALLLENGAA 218
            +   +      +  A   G ++    L    AA
Sbjct: 94  RLDVRDAWGRLPVDLAEELGHRDVARYLRA--AA 125

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 6e-04
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 191 DKDNTALHYAAGYGRKECVALLLENGA 217
           +     L  AA  GR E V  LLE GA
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGA 27

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.8
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.78
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.77
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.76
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.75
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.75
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.71
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.7
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.68
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.66
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.64
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.59
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.58
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.58
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.58
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.58
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.58
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.56
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.52
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.51
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.51
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.51
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.49
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.49
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.49
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.49
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.46
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.45
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.42
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.42
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.4
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.33
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.29
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.27
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.11

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=3.1e-19  Score=133.08  Aligned_cols=94  Identities=28%  Similarity=0.388  Sum_probs=85.0

Q ss_pred             ccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHH
Q 025512          153 KKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDV  232 (251)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~  232 (251)
                      ..+....++++........+++++|+..|  .+++.+|.+|+||||+|+..|+.++|++|+++|++++.+|..|+||||+
T Consensus        43 ~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~g--adin~~d~~g~TpLh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~  120 (154)
T d1dcqa1          43 EPDETALHLAVRSVDRTSLHIVDFLVQNS--GNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDI  120 (154)
T ss_dssp             STTCBHHHHHHHHCCTTTHHHHHHHHHHC--SCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHH
T ss_pred             CCCCchHHHHHHhcCCCCHHHHHHHHHcC--CChhhhhhhhccccccccccccccccccccccCccccccCCCCCCHHHH
Confidence            34556777777777777889999888876  6789999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhC
Q 025512          233 AKLNSQHDVLKLLEKD  248 (251)
Q Consensus       233 A~~~g~~~iv~~Ll~~  248 (251)
                      |++.|+.+|+++|++.
T Consensus       121 A~~~~~~~i~~~L~~~  136 (154)
T d1dcqa1         121 AKRLKHEHCEELLTQA  136 (154)
T ss_dssp             HHHTTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHh
Confidence            9999999999999874

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=2.7e-19  Score=128.86  Aligned_cols=79  Identities=22%  Similarity=0.259  Sum_probs=71.1

Q ss_pred             CcHHHHHHHHhcCCCccccccCCCCc-hHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          169 SLKPILDEIESGGPSAMMKYWNDKDN-TALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       169 ~~~~~l~~L~~~~~~~~v~~~d~~G~-TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                      +..+++++|+..+  .+++..+..|. ||||+|+..|+.++|++|+++|++++.+|..|+||||+|++.|+.+|+++|+.
T Consensus        46 g~~~~v~~Ll~~g--a~~~~~~~~~~~~~L~~A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          46 GSARVAELLLLHG--AEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             TCHHHHHHHHTTT--CCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            3467888888887  56788888776 69999999999999999999999999999999999999999999999999987


Q ss_pred             CC
Q 025512          248 DA  249 (251)
Q Consensus       248 ~~  249 (251)
                      .+
T Consensus       124 aa  125 (125)
T d1bi7b_         124 AA  125 (125)
T ss_dssp             CC
T ss_pred             cC
Confidence            53

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.7e-18  Score=129.06  Aligned_cols=141  Identities=13%  Similarity=0.219  Sum_probs=101.8

Q ss_pred             chHHHHHHHHHh-hhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCcHH
Q 025512           81 PAFNSMAEQLQK-TLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIE  158 (251)
Q Consensus        81 ~~f~~i~~~l~~-~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~~~  158 (251)
                      .....+.++|.+ +.+        ++ .+..|++.+..+...            ..    ..+..+++.+.+++.....+
T Consensus        13 g~~~~vk~lL~~~~~~--------~n~~d~~g~t~L~~A~~~------------~~----~~v~~Ll~~~~~~~~~~~~~   68 (156)
T d1bd8a_          13 GDVQEVRRLLHRELVH--------PDALNRFGKTALQVMMFG------------ST----AIALELLKQGASPNVQDTSG   68 (156)
T ss_dssp             TCHHHHHHHHHTTCCC--------TTCCCTTSCCHHHHSCTT------------CH----HHHHHHHHTTCCTTCCCTTS
T ss_pred             CCHHHHHHHHHhCCCC--------CCccCCCCCccccccccc------------cc----cccccccccccccccccccc
Confidence            345666666664 333        55 567777776544321            11    34555666666665544333


Q ss_pred             HHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 025512          159 ERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ  238 (251)
Q Consensus       159 ~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~  238 (251)
                      ..............++++++..+  .+++.+|..|+||||+|+..|+.+++++|+ .|++++.+|..|+||||+|+..|+
T Consensus        69 ~~~l~~~~~~~~~~~~~~~l~~~--~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~  145 (156)
T d1bd8a_          69 TSPVHDAARTGFLDTLKVLVEHG--ADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGA  145 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCC
T ss_pred             ccccccccccccccccccccccc--cccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCC
Confidence            22223333334466677777776  567889999999999999999999999887 799999999999999999999999


Q ss_pred             HHHHHHHHhC
Q 025512          239 HDVLKLLEKD  248 (251)
Q Consensus       239 ~~iv~~Ll~~  248 (251)
                      .+|+++|++|
T Consensus       146 ~~iv~~Ll~h  155 (156)
T d1bd8a_         146 QDLVDILQGH  155 (156)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHhh
Confidence            9999999987

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=3.1e-18  Score=126.82  Aligned_cols=137  Identities=20%  Similarity=0.142  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHhhhcCCCCCCCCCccchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCC---ccCcHH
Q 025512           82 AFNSMAEQLQKTLHGANAEESIPQFDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPT---KKDQIE  158 (251)
Q Consensus        82 ~f~~i~~~l~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~---~~~~~~  158 (251)
                      ..+.+..+|.++++        .+.+..|++.++.+.......               .+..++.......   ......
T Consensus        14 ~~~~v~~LL~~ga~--------~~~~~~g~t~L~~a~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~   70 (153)
T d1awcb_          14 QDDEVRILMANGAP--------FTTDWLGTSPLHLAAQYGHFS---------------TTEVLLRAGVSRDARTKVDRTP   70 (153)
T ss_dssp             CHHHHHHHHHHTCC--------CCCCTTCCCHHHHHHHHTCHH---------------HHHHHHTTTCCTTCCCTTCCCH
T ss_pred             CHHHHHHHHHcCCC--------cccccCCCccccccccccccc---------------cccccccccccccccccccccc
Confidence            45666777777776        456778888888766552221               1111111111111   111222


Q ss_pred             HHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC
Q 025512          159 ERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ  238 (251)
Q Consensus       159 ~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~  238 (251)
                      .+......   ...+++++...+  .+.+.+|.+|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|+..|+
T Consensus        71 ~~~~~~~~---~~~~~~~l~~~~--~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~  145 (153)
T d1awcb_          71 LHMAASEG---HANIVEVLLKHG--ADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGN  145 (153)
T ss_dssp             HHHHHHHT---CHHHHHHHHTTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTC
T ss_pred             cccccccc---cceeeecccccC--CccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCC
Confidence            33333333   344555666665  5677889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHH
Q 025512          239 HDVLKLLE  246 (251)
Q Consensus       239 ~~iv~~Ll  246 (251)
                      .+|+++|.
T Consensus       146 ~eiv~lL~  153 (153)
T d1awcb_         146 EDLAEILQ  153 (153)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhCc
Confidence            99999873

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.8e-18  Score=135.37  Aligned_cols=138  Identities=20%  Similarity=0.216  Sum_probs=100.2

Q ss_pred             hhchHHHHHHHHcCCcchHHHHHhhhhc-------cCChHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhc
Q 025512          108 TTQYYSTMQQVMQNPQFMTMAERLGNAL-------MQDPSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESG  180 (251)
Q Consensus       108 ~~g~~~l~~~l~~~~~~~~~a~~~~~~l-------l~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~  180 (251)
                      ..++.++++.|+..+..++..+..+...       -....+..+++.+.+++..+..+.....+........++++|...
T Consensus        79 ~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~  158 (223)
T d1uoha_          79 SAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYY  158 (223)
T ss_dssp             HHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             cccccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccc
Confidence            3456667777766655443322222110       011466777888888876655444333334334455667777777


Q ss_pred             CCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          181 GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       181 ~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      +  .+++.+|.+|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+| ..|+.+|+++|++.
T Consensus       159 ~--~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~Gad~~~~d~~g~tpl~~A-~~~~~~i~~~Ll~~  223 (223)
T d1uoha_         159 K--ASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENKEEKTPLQVA-KGGLGLILKRMVEG  223 (223)
T ss_dssp             T--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHC-CTTHHHHHHHHHCC
T ss_pred             c--ceeeeccCCCCceeccccccCcHHHHHHHHHCCCCCCCCCCCCCCHHHHH-HCCCHHHHhcccCC
Confidence            6  56889999999999999999999999999999999999999999999998 47999999999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=1.3e-18  Score=126.01  Aligned_cols=74  Identities=30%  Similarity=0.307  Sum_probs=37.0

Q ss_pred             HHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          172 PILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       172 ~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                      +++++|+..|  .++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|.+|+||||+|+..|+.++|++|++
T Consensus        15 ~~v~~Ll~~g--~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~   88 (130)
T d1ycsb1          15 DLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVE   88 (130)
T ss_dssp             HHHHHHTSTT--SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcC--CCccccccccccccccccccccccccccccccccccccccccCcccccccchhhHHHHHHHHHH
Confidence            3344444443  3344445555555555555555555555555555555555555555555555555555555544

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=8.9e-18  Score=119.50  Aligned_cols=77  Identities=23%  Similarity=0.272  Sum_probs=59.0

Q ss_pred             cHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          170 LKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       170 ~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ..+++++|+..|  .+++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||||+|+..|+.++|++|+++
T Consensus        14 ~~~~v~~Ll~~g--~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~   90 (118)
T d1myoa_          14 DLDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK   90 (118)
T ss_dssp             CHHHHHHHHTTT--CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTT
T ss_pred             CHHHHHHHHHhh--hccccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCchhhhhhhhcc
Confidence            445666666665  55677777888888888888888888888888888888888888888888888888888877764

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.70  E-value=1.1e-16  Score=124.21  Aligned_cols=104  Identities=22%  Similarity=0.222  Sum_probs=78.1

Q ss_pred             HHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCC
Q 025512          140 SMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAV  219 (251)
Q Consensus       140 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~  219 (251)
                      ....++....+.+..+..+..............++..++..+  .+++..|..|+||||+|+..|+.++|++|+++|+|+
T Consensus       105 ~~~~L~~~~~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~--~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gad~  182 (209)
T d1ot8a_         105 MVEDLITADADINAADNSGKTALHWAAAVNNTEAVNILLMHH--ANRDAQDDKDETPLFLAAREGSYEASKALLDNFANR  182 (209)
T ss_dssp             HHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCT
T ss_pred             hhhhhhhhcccccccCCCCCCcchhhcccCcceeeeeecccc--ccccccccccccccchhccccHHHHHHHHHHCCCCC
Confidence            344445555554444333222222222223455556666664  567889999999999999999999999999999999


Q ss_pred             CCCCCCCCcHHHHHHHcCCHHHHHHH
Q 025512          220 TLQNMDGKTPIDVAKLNSQHDVLKLL  245 (251)
Q Consensus       220 ~~~d~~G~TpL~~A~~~g~~~iv~~L  245 (251)
                      +.+|..|+||||+|++.|+.+||++|
T Consensus       183 n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         183 EITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             TCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            99999999999999999999999987

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.8e-17  Score=137.81  Aligned_cols=106  Identities=21%  Similarity=0.213  Sum_probs=82.7

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      ..+..+++.+.+++.......+............++++++..+  .++|.+|.+|+||||+|+..|+.++|++|+++|||
T Consensus       278 ~i~~~Ll~~g~~~~~~~~~~~t~L~~~~~~~~~~~~~~ll~~g--~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd  355 (408)
T d1n11a_         278 PVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQ--ADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGAS  355 (408)
T ss_dssp             HHHHHHHHHTCCTTCCCSSCCCHHHHHHHSSCSHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCccccccccccccchhhcccCcceeeeeecccc--ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Confidence            4555667777777655433322222222223345566667765  67899999999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 025512          219 VTLQNMDGKTPIDVAKLNSQHDVLKLLE  246 (251)
Q Consensus       219 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  246 (251)
                      ++.+|.+|+||||+|++.|+.+||++|.
T Consensus       356 ~n~~d~~G~t~L~~A~~~~~~~iv~~L~  383 (408)
T d1n11a_         356 PNEVSSDGTTPLAIAKRLGYISVTDVLK  383 (408)
T ss_dssp             SCCCCSSSCCHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHcCCHHHHHHHH
Confidence            9999999999999999999999999874

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=1.5e-18  Score=123.54  Aligned_cols=98  Identities=21%  Similarity=0.219  Sum_probs=71.9

Q ss_pred             HHHHHHHhcCCCCcc---CcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCC
Q 025512          140 SMSHMMESLTNPTKK---DQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENG  216 (251)
Q Consensus       140 ~~~~ll~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~G  216 (251)
                      .+..+++.+.+++..   +....+.++..++...   +++|+..+  .+++.+|..|+||||+|+..|+.++|++|+++|
T Consensus        17 ~v~~Ll~~g~d~n~~~~~g~t~lh~A~~~~~~~~---~~~ll~~g--~din~~d~~g~tpLh~A~~~~~~~~v~~Ll~~G   91 (118)
T d1myoa_          17 EVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEI---LEFLLLKG--ADINAPDKHHITPLLSAVYEGHVSCVKLLLSKG   91 (118)
T ss_dssp             HHHHHHTTTCCCCCCSSSSCCTTHHHHHHSTTTH---HHHHHHSS--CTTTCCSSSCSCHHHHHHTTTCCHHHHHHHTTC
T ss_pred             HHHHHHHhhhcccccccccccccccccccccccc---cccccccc--ceeeecccccccchhhhhhcCchhhhhhhhccc
Confidence            344444444444333   3345566666666554   44455655  678889999999999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHH
Q 025512          217 AAVTLQNMDGKTPIDVAKLNSQHDVLKLLE  246 (251)
Q Consensus       217 ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll  246 (251)
                      +|++.+|..|+||||+|..    +.++.|+
T Consensus        92 ad~~~~d~~G~t~l~~a~~----~~i~~LL  117 (118)
T d1myoa_          92 ADKTVKGPDGLTALEATDN----QAIKALL  117 (118)
T ss_dssp             CCSSSSSSSTCCCCCTCSS----TTTGGGG
T ss_pred             ccceeeCCCCCCHHHHHhH----HHHHHhc
Confidence            9999999999999999843    3455554

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.1e-17  Score=119.61  Aligned_cols=104  Identities=18%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             HHHHHHHhcCCCCccC---cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCC
Q 025512          140 SMSHMMESLTNPTKKD---QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENG  216 (251)
Q Consensus       140 ~~~~ll~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~G  216 (251)
                      .+..+++.+.+++..+   ....+.++...   ..+++++|+..+  .+++..|.+|+||||+|+..|+.++|++|+++|
T Consensus        16 ~v~~Ll~~g~d~n~~d~~g~t~Lh~A~~~~---~~~~~~~ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g   90 (130)
T d1ycsb1          16 LVQRIIYEVDDPSLPNDEGITALHNAVCAG---HTEIVKFLVQFG--VNVNAADSDGWTPLHCAASCNNVQVCKFLVESG   90 (130)
T ss_dssp             HHHHHTSTTSSCCCCCTTSCCHHHHHHHHT---CHHHHHHHHHHT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCccccccccccccccccccc---cccccccccccc--cccccccccCcccccccchhhHHHHHHHHHHcC
Confidence            3444444444444433   33445555544   456666677765  578889999999999999999999999999999


Q ss_pred             CCCCCCCC-CCCcHHHHH--HHcCCHHHHHHHHhC
Q 025512          217 AAVTLQNM-DGKTPIDVA--KLNSQHDVLKLLEKD  248 (251)
Q Consensus       217 ad~~~~d~-~G~TpL~~A--~~~g~~~iv~~Ll~~  248 (251)
                      ++++.++. .|+||++++  ...|+.+|+++|+..
T Consensus        91 a~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~  125 (130)
T d1ycsb1          91 AAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV  125 (130)
T ss_dssp             CCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHH
T ss_pred             CCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhH
Confidence            99998874 588988776  577899999999863

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=8.7e-16  Score=120.78  Aligned_cols=159  Identities=19%  Similarity=0.183  Sum_probs=112.6

Q ss_pred             HHHhcCchHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcc-hH---------------------HHHHh
Q 025512           75 EQIAKDPAFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQF-MT---------------------MAERL  131 (251)
Q Consensus        75 ~~i~~n~~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~-~~---------------------~a~~~  131 (251)
                      +++..+..+..+.++|...-..       ++ .|..|+|.++.+...+... +.                     .+...
T Consensus         8 ~~~a~~G~~~~v~~~l~~~~~~-------~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           8 CNLAYSGKLEELKESILADKSL-------ATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             HHHHHTTCHHHHHHHHHHCGGG-------GGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHhCCCc-------CcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccc
Confidence            4455566777787777654321       33 5666777766655443211 00                     11111


Q ss_pred             hhhccCChHHHHHHHhcCCCCccCc---HHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHH
Q 025512          132 GNALMQDPSMSHMMESLTNPTKKDQ---IEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKEC  208 (251)
Q Consensus       132 ~~~ll~~~~~~~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~  208 (251)
                      +.    ...+..+++.+.+++..+.   .+.+.++...   ..+++++|++.|  .+++.+|..|.||||+|+..++.++
T Consensus        81 ~~----~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~---~~e~~~~Ll~~g--~d~~~~~~~~~t~L~~a~~~~~~~~  151 (223)
T d1uoha_          81 GR----DEIVKALLGKGAQVNAVNQNGCTPLHYAASKN---RHEIAVMLLEGG--ANPDAKDHYEATAMHRAAAKGNLKM  151 (223)
T ss_dssp             TC----HHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHT---CHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHH
T ss_pred             cc----cchhHHHhccCceeEeeCCCCCchhhHHHHcC---CHHHHHHHHHCC--CCCCCcCCCCCccchhhhhcCCcch
Confidence            11    1456667777777665544   4455555543   356777777776  5678889999999999999999999


Q ss_pred             HHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          209 VALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       209 v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +++|++.|.+++.+|..|+||||+|+..|+.++|++|+++.
T Consensus       152 ~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v~~LL~~G  192 (223)
T d1uoha_         152 IHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG  192 (223)
T ss_dssp             HHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hhhhccccceeeeccCCCCceeccccccCcHHHHHHHHHCC
Confidence            99999999999999999999999999999999999998753

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.6e-16  Score=116.59  Aligned_cols=142  Identities=20%  Similarity=0.247  Sum_probs=99.5

Q ss_pred             hHHHHHHHHHhhhcCCCCCCCCCc-cchhchHHHHHHHHcCCcchHHHHHhhhhccCChHHHHHHHhcCCCCccCcHHHH
Q 025512           82 AFNSMAEQLQKTLHGANAEESIPQ-FDTTQYYSTMQQVMQNPQFMTMAERLGNALMQDPSMSHMMESLTNPTKKDQIEER  160 (251)
Q Consensus        82 ~f~~i~~~l~~~~~~~~~~~~~~~-~~~~g~~~l~~~l~~~~~~~~~a~~~~~~ll~~~~~~~ll~~~~~~~~~~~~~~~  160 (251)
                      ..+.+..++++|++        ++ .+..|.+.++.+..            +..    ..+..+++.+.+++..+..+..
T Consensus        13 ~~~~v~~Ll~~g~d--------~n~~d~~g~TpL~~A~~------------~~~----ei~~~Ll~~~a~~~~~~~~~~~   68 (156)
T d1ihba_          13 DLEQLTSLLQNNVN--------VNAQNGFGRTALQVMKL------------GNP----EIARRLLLRGANPDLKDRTGFA   68 (156)
T ss_dssp             CHHHHHHHTTSCCC--------TTCCCTTSCCHHHHCCS------------SCH----HHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CHHHHHHHHHCCCC--------cCccCCccccccccccc------------ccc----cccccccccccccccccccCcc
Confidence            34555566666666        55 56666666653311            111    3455566666666554433332


Q ss_pred             HHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCC-CCCCCCCCCCcHHHHHHHcCCH
Q 025512          161 MAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGA-AVTLQNMDGKTPIDVAKLNSQH  239 (251)
Q Consensus       161 ~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Ga-d~~~~d~~G~TpL~~A~~~g~~  239 (251)
                      ................++..+  ..++..|..|.+|||+|+..++.+++++|+++|+ +++.+|..|+||||+|+..++.
T Consensus        69 ~l~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~  146 (156)
T d1ihba_          69 VIHDAARAGFLDTLQTLLEFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRN  146 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred             ccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCH
Confidence            222222333445555566665  4567789999999999999999999999999976 8999999999999999999999


Q ss_pred             HHHHHHHhCC
Q 025512          240 DVLKLLEKDA  249 (251)
Q Consensus       240 ~iv~~Ll~~~  249 (251)
                      ++|++|+++.
T Consensus       147 ~iv~~Ll~~G  156 (156)
T d1ihba_         147 EVVSLMQANG  156 (156)
T ss_dssp             HHHHHHHHTC
T ss_pred             HHHHHHHhcC
Confidence            9999999863

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.59  E-value=6.2e-15  Score=119.80  Aligned_cols=62  Identities=27%  Similarity=0.402  Sum_probs=51.5

Q ss_pred             cccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          187 KYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       187 ~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ...+..|.||||+|+..|+.+++++|+++|++++.++..|+||||+|+..|+.+||++|+++
T Consensus       193 ~~~~~~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~  254 (291)
T d1s70b_         193 VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVEN  254 (291)
T ss_dssp             CCCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHT
T ss_pred             ccccCCCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHC
Confidence            34466788888888888888888888888888888888888888888888888888888875

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.58  E-value=1e-16  Score=134.63  Aligned_cols=91  Identities=18%  Similarity=0.110  Sum_probs=71.6

Q ss_pred             cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCC--CCCCcHHHHH
Q 025512          156 QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQN--MDGKTPIDVA  233 (251)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d--~~G~TpL~~A  233 (251)
                      ....++++..++.+.++++..|...+  +++|.+|.+|+||||+||..||.++|++|+++|++++..+  .+|+||||+|
T Consensus        91 ~t~L~~Aa~~g~~~~~~~~~~L~~~~--~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~A  168 (346)
T d2ajaa1          91 EVICFVAAITGCSSALDTLCLLLTSD--EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLA  168 (346)
T ss_dssp             HHHHHHHHHHCCHHHHHHHTTC--CC--SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHH
T ss_pred             CcHHHHHHHhCCHHHHHHHHHHHhCC--CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHH
Confidence            34445566666655666666677776  6788899999999999999999999999999999998876  4689999999


Q ss_pred             HHcCCHHHHHHHHhC
Q 025512          234 KLNSQHDVLKLLEKD  248 (251)
Q Consensus       234 ~~~g~~~iv~~Ll~~  248 (251)
                      +..||.+||++|+++
T Consensus       169 a~~g~~~iv~~Ll~~  183 (346)
T d2ajaa1         169 AENGHLHVLNRLCEL  183 (346)
T ss_dssp             HHTTCHHHHHHHHHS
T ss_pred             HHHhhHHHHHHHHHc
Confidence            999999999999875

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=3e-15  Score=119.40  Aligned_cols=92  Identities=23%  Similarity=0.272  Sum_probs=74.1

Q ss_pred             cCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 025512          154 KDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA  233 (251)
Q Consensus       154 ~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  233 (251)
                      .+....+.++...   ..+++++|+..+.. ..+..+..|+||||+|+..|+.++|++|+++|++++.+|..|+||||+|
T Consensus       157 ~g~TpLh~A~~~~---~~~~v~~Ll~~~~~-~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~~A  232 (255)
T d1oy3d_         157 DGHTPLHVAVIHK---DAEMVRLLRDAGAD-LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSA  232 (255)
T ss_dssp             TSCCHHHHHHHTT---CHHHHHHHHHHTCC-TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             cCccccccccccc---ccccccchhccccc-ccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
Confidence            3444555555444   45666667666522 2334577899999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhCC
Q 025512          234 KLNSQHDVLKLLEKDA  249 (251)
Q Consensus       234 ~~~g~~~iv~~Ll~~~  249 (251)
                      +..++.+++++|+++.
T Consensus       233 ~~~~~~~i~~~Ll~~G  248 (255)
T d1oy3d_         233 LLRPNPILARLLRAHG  248 (255)
T ss_dssp             HTSSCHHHHHHHHHTT
T ss_pred             HHCCCHHHHHHHHHcC
Confidence            9999999999999863

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.58  E-value=4.7e-15  Score=119.37  Aligned_cols=76  Identities=24%  Similarity=0.407  Sum_probs=67.2

Q ss_pred             HHHHHH-HHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          171 KPILDE-IESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       171 ~~~l~~-L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      ..++.+ +...+  .+++.+|..|+||||+|+..|+.++|++|+++|+|++.+|..|+||||+|++.|+.+||++|+++
T Consensus       200 ~~~~~~~l~~~~--~~~~~~d~~g~tpL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~~A~~~~~~~iv~lL~~c  276 (277)
T d2fo1e1         200 MPIVKYLVGEKG--SNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC  276 (277)
T ss_dssp             HHHHHHHHHHSC--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHHHHHHTTCHHHHHHHHTT
T ss_pred             cccccccccccc--ccccccCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHh
Confidence            344433 44554  56777899999999999999999999999999999999999999999999999999999999986

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.2e-14  Score=117.34  Aligned_cols=82  Identities=23%  Similarity=0.236  Sum_probs=74.2

Q ss_pred             hcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHC-CCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 025512          165 KEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLEN-GAAVTLQNMDGKTPIDVAKLNSQHDVLK  243 (251)
Q Consensus       165 ~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~-Gad~~~~d~~G~TpL~~A~~~g~~~iv~  243 (251)
                      ........++++|+..+  ++++.+|..|+||||+|+..|+.++|++|++. |++++.+|.+|+||||+|++.|+.++|+
T Consensus       193 ~~~~~~~~i~~~Li~~g--a~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~  270 (285)
T d1wdya_         193 SDDSDVEAITHLLLDHG--ADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAE  270 (285)
T ss_dssp             SCTTTHHHHHHHHHHTT--CCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHCC--CCCCccCCCCCCccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHH
Confidence            34556677888888886  56888899999999999999999999999985 9999999999999999999999999999


Q ss_pred             HHHhC
Q 025512          244 LLEKD  248 (251)
Q Consensus       244 ~Ll~~  248 (251)
                      +|+++
T Consensus       271 ~Ll~~  275 (285)
T d1wdya_         271 LLCKR  275 (285)
T ss_dssp             HHHHH
T ss_pred             HHHHC
Confidence            99985

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=6.1e-15  Score=109.43  Aligned_cols=83  Identities=23%  Similarity=0.278  Sum_probs=66.6

Q ss_pred             cCCCcHHHHHHHHhcCCC---ccccccCCCCchHHHHHHHc---CCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCH
Q 025512          166 EDPSLKPILDEIESGGPS---AMMKYWNDKDNTALHYAAGY---GRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQH  239 (251)
Q Consensus       166 ~~~~~~~~l~~L~~~~~~---~~v~~~d~~G~TpLh~Aa~~---g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~  239 (251)
                      ...++..++..+..+.+.   ......+..|+||||+|+..   |+.++|++|+++|++++.+|..|+||||+|+..|+.
T Consensus        15 ~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~A~~~~~~   94 (154)
T d1dcqa1          15 KTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNA   94 (154)
T ss_dssp             HTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHHHHHTTCH
T ss_pred             HhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhccccccccccccc
Confidence            355666666655554321   11223367799999999974   688999999999999999999999999999999999


Q ss_pred             HHHHHHHhC
Q 025512          240 DVLKLLEKD  248 (251)
Q Consensus       240 ~iv~~Ll~~  248 (251)
                      +++++|+++
T Consensus        95 ~~v~~Ll~~  103 (154)
T d1dcqa1          95 ECLKLLLRG  103 (154)
T ss_dssp             HHHHHHHHT
T ss_pred             ccccccccc
Confidence            999999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.56  E-value=3.8e-15  Score=118.77  Aligned_cols=95  Identities=26%  Similarity=0.282  Sum_probs=79.6

Q ss_pred             CCccCcHHHHHHHHhcCCCcHHHHHHHHhc-CCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Q 025512          151 PTKKDQIEERMAKIKEDPSLKPILDEIESG-GPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP  229 (251)
Q Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~-~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp  229 (251)
                      .+..+....+.++..++.   +++++|+.. .....++.+|..|+||||+|+..|+.+++++|+++|++++.+|..|+||
T Consensus         5 i~~~G~t~Lh~A~~~~~~---~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~g~~~iv~~Ll~~ga~i~~~d~~g~tp   81 (255)
T d1oy3d_           5 VTEDGDTALHLAVIHQHE---PFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTA   81 (255)
T ss_dssp             CCTTCCCHHHHHHHTTCH---HHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred             CCcCCCCHHHHHHHcCCH---HHHHHHHHcCCCcccccCcCCCCCCccchHHhhcccccccccccccccccccccccchh
Confidence            344556777777777654   455555544 3455688899999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhC
Q 025512          230 IDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       230 L~~A~~~g~~~iv~~Ll~~  248 (251)
                      ||+|+..++.+++++|++.
T Consensus        82 L~~A~~~~~~~~~~~Ll~~  100 (255)
T d1oy3d_          82 LHLACRVRAHTCACVLLQP  100 (255)
T ss_dssp             HHHHTTTTCHHHHHHHSSS
T ss_pred             hhhhhccCchHHHHHHHhh
Confidence            9999999999999999865

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.52  E-value=2.6e-14  Score=117.35  Aligned_cols=49  Identities=29%  Similarity=0.416  Sum_probs=47.4

Q ss_pred             ccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHH
Q 025512          186 MKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAK  234 (251)
Q Consensus       186 v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~  234 (251)
                      +|.+|.+|+||||+|++.|+.++|++|+++|||++.+|..|+||||+|+
T Consensus       252 in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~~A~  300 (301)
T d1sw6a_         252 LNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVDFGA  300 (301)
T ss_dssp             TTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGGGTC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHcC
Confidence            6889999999999999999999999999999999999999999999985

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7e-15  Score=115.14  Aligned_cols=87  Identities=24%  Similarity=0.227  Sum_probs=69.4

Q ss_pred             HHHHHHHHhcCCCcHHHHHHHHhcCCCcccccc-CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 025512          157 IEERMAKIKEDPSLKPILDEIESGGPSAMMKYW-NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL  235 (251)
Q Consensus       157 ~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  235 (251)
                      ...+.++...   ....+.+|...+  ..++.. +.+|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|+.
T Consensus       113 t~l~~a~~~~---~~~~~~~l~~~~--~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~  187 (221)
T d1iknd_         113 TCLHLASIHG---YLGIVELLVSLG--ADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWG  187 (221)
T ss_dssp             CHHHHHHHTT---CHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTT
T ss_pred             hhhhHHhhcC---ChhheeeecccC--cccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHH
Confidence            3444444333   345555555554  334444 4679999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhC
Q 025512          236 NSQHDVLKLLEKD  248 (251)
Q Consensus       236 ~g~~~iv~~Ll~~  248 (251)
                      .++.+++++|++.
T Consensus       188 ~~~~~~~~~l~~~  200 (221)
T d1iknd_         188 RPSTRIQQQLGQL  200 (221)
T ss_dssp             SSCHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHc
Confidence            9999999999875

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=3.6e-15  Score=121.21  Aligned_cols=83  Identities=28%  Similarity=0.315  Sum_probs=67.7

Q ss_pred             cHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHH
Q 025512          156 QIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKL  235 (251)
Q Consensus       156 ~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~  235 (251)
                      ....+.++..   +..+++++|+..+  .+++.++.+|+||||+|+..|+.++|++|+++|||++.+|..|+||||+|++
T Consensus       200 ~t~L~~a~~~---~~~~~~~~Ll~~g--~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~~A~e  274 (291)
T d1s70b_         200 GTALHVAAAK---GYTEVLKLLIQAR--YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDVADE  274 (291)
T ss_dssp             CCHHHHHHHH---TCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTTSCCS
T ss_pred             CChhhHHHHc---CChhhhcccccce--ecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHH
Confidence            3344444444   3467777788876  6788899999999999999999999999999999999999999999999975


Q ss_pred             cCCHHHHHHHHh
Q 025512          236 NSQHDVLKLLEK  247 (251)
Q Consensus       236 ~g~~~iv~~Ll~  247 (251)
                          +++++|.+
T Consensus       275 ----~~~~~L~~  282 (291)
T d1s70b_         275 ----DILGYLEE  282 (291)
T ss_dssp             ----GGGHHHHH
T ss_pred             ----HHHHHHHH
Confidence                46666543

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=5.9e-15  Score=105.61  Aligned_cols=84  Identities=18%  Similarity=0.143  Sum_probs=71.2

Q ss_pred             HHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCC-cHHHHHHHcC
Q 025512          159 ERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGK-TPIDVAKLNS  237 (251)
Q Consensus       159 ~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~-TpL~~A~~~g  237 (251)
                      .+.++..+   ..+++++|++.|  .+++.+|..|+||||+|+ .|+.+++++|+++|++++.++..|. ||||+|++.|
T Consensus         7 L~~Aa~~G---~~~~v~~Ll~~g--ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~~g   80 (125)
T d1bi7b_           7 LATAAARG---RVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAREG   80 (125)
T ss_dssp             HHHHHHHT---CHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHHHT
T ss_pred             HHHHHHCC---CHHHHHHHHHcC--Cccccccccccccccccc-cccccccccccccccccccccccccccccccccccc
Confidence            34444444   366777778776  678899999999999775 7999999999999999999998876 6999999999


Q ss_pred             CHHHHHHHHhC
Q 025512          238 QHDVLKLLEKD  248 (251)
Q Consensus       238 ~~~iv~~Ll~~  248 (251)
                      +.+++++|+++
T Consensus        81 ~~~~v~~Ll~~   91 (125)
T d1bi7b_          81 FLDTLVVLHRA   91 (125)
T ss_dssp             CHHHHHHHHHH
T ss_pred             ccccccccccc
Confidence            99999999985

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.49  E-value=3e-14  Score=114.53  Aligned_cols=92  Identities=20%  Similarity=0.205  Sum_probs=78.8

Q ss_pred             CcHHHHHHHHhcCCCcHHHH-----HHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcH
Q 025512          155 DQIEERMAKIKEDPSLKPIL-----DEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTP  229 (251)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~l-----~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~Tp  229 (251)
                      +....|+++..++.++++++     ..++..|  ++||.+|.+|+||||+|+..|+.++|++|+++|+|++.+|..|.||
T Consensus        33 g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~G--advn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad~n~~~~~g~t~  110 (277)
T d2fo1e1          33 NRTVLHWIASNSSAEKSEDLIVHEAKECIAAG--ADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSA  110 (277)
T ss_dssp             CCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTC--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCH
T ss_pred             CccHHHHHHHcCCHHHHHHHHhcchhHHHHcC--CCccccCCCCCeeecccccccccccccccccccccccccccccccc
Confidence            56778888877777665543     3344555  6889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhC
Q 025512          230 IDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       230 L~~A~~~g~~~iv~~Ll~~  248 (251)
                      |++|...++.+++.++...
T Consensus       111 l~~a~~~~~~~~~~~l~~~  129 (277)
T d2fo1e1         111 LHQAAANRDFGMMVYMLNS  129 (277)
T ss_dssp             HHHHHHTTCHHHHHHHTTS
T ss_pred             ccchhhhcchhhhhhhhhc
Confidence            9999999999999887653

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.3e-14  Score=121.48  Aligned_cols=86  Identities=30%  Similarity=0.363  Sum_probs=74.9

Q ss_pred             HHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcC
Q 025512          158 EERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNS  237 (251)
Q Consensus       158 ~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g  237 (251)
                      +.++++..++   .+++++|+..|  .++|..|..|+||||+|+..|+.++|++|+++|++++.++..|+||||+|+..|
T Consensus         3 pL~~Aa~~g~---~~~v~~Ll~~g--~~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gadi~~~~~~g~t~L~~A~~~g   77 (408)
T d1n11a_           3 PLHVASFMGH---LPIVKNLLQRG--ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIG   77 (408)
T ss_dssp             HHHHHHHHTC---HHHHHHHHHTT--CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTSCCHHHHHHHHT
T ss_pred             hHHHHHHCcC---HHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcC
Confidence            4556666554   55666667766  678999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhC
Q 025512          238 QHDVLKLLEKD  248 (251)
Q Consensus       238 ~~~iv~~Ll~~  248 (251)
                      +.+++++|+..
T Consensus        78 ~~~~~~~Ll~~   88 (408)
T d1n11a_          78 HTNMVKLLLEN   88 (408)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CHHHHHHHHHh
Confidence            99999998864

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.49  E-value=1.1e-14  Score=114.13  Aligned_cols=101  Identities=22%  Similarity=0.250  Sum_probs=70.4

Q ss_pred             HHHHHHhcCCCCccCc---HHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHH-CC
Q 025512          141 MSHMMESLTNPTKKDQ---IEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLE-NG  216 (251)
Q Consensus       141 ~~~ll~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~-~G  216 (251)
                      ...++..+......+.   ...+.++..+   ..+++++|+..+ ..+++.+|.+|+||||+|+..|+.++|++|++ .|
T Consensus       121 ~~~l~~~~~~~~~~~~~g~t~l~~a~~~~---~~~~~~~Ll~~~-~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~g  196 (229)
T d1ixva_         121 SQFLIENGASVRIKDKFNQIPLHRAASVG---SLKLIELLCGLG-KSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG  196 (229)
T ss_dssp             HHHHHHTTCCSCCCCTTSCCHHHHHHHHT---CHHHHHHHHTTT-CCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC
T ss_pred             hhhhhhhcccccccCCCCCCccchhhhcc---cccccccccccc-cccccccccccCCchhhhcccccHHHHHHHHHhcC
Confidence            3444555555544333   3334444333   345666666654 25678888889999999999999999998886 48


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          217 AAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       217 ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                      +|++.+|..|+||||+|+   +.+++++|+++
T Consensus       197 ad~~~~d~~g~t~l~~A~---~~~~~~~Ll~~  225 (229)
T d1ixva_         197 AEYDLVDNKGAKAEDVAL---NEQVKKFFLNN  225 (229)
T ss_dssp             CCSCCCCTTSCCTGGGCS---CHHHHHHHHHH
T ss_pred             CCCCCcCCCCCCHHHHHh---hHHHHHHHHHc
Confidence            899998888999999887   35788888864

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=2.1e-13  Score=100.90  Aligned_cols=108  Identities=20%  Similarity=0.306  Sum_probs=82.8

Q ss_pred             hHHHHHHHh-cCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCC
Q 025512          139 PSMSHMMES-LTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGA  217 (251)
Q Consensus       139 ~~~~~ll~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Ga  217 (251)
                      ..+..+++. +.+++..+..+.+...++.... .+++.+|+..+  .+++..+..|.+||++++..++.+++++++++|+
T Consensus        16 ~~vk~lL~~~~~~~n~~d~~g~t~L~~A~~~~-~~~v~~Ll~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~   92 (156)
T d1bd8a_          16 QEVRRLLHRELVHPDALNRFGKTALQVMMFGS-TAIALELLKQG--ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGA   92 (156)
T ss_dssp             HHHHHHHHTTCCCTTCCCTTSCCHHHHSCTTC-HHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCCCccCCCCCcccccccccc-ccccccccccc--cccccccccccccccccccccccccccccccccc
Confidence            444455543 4455554443333333333333 46666677665  5678888999999999999999999999999999


Q ss_pred             CCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          218 AVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       218 d~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      +++.+|..|+||||+|++.|+.+++++|++++
T Consensus        93 ~~n~~~~~~~t~L~~A~~~~~~~i~~~L~~~~  124 (156)
T d1bd8a_          93 DVNVPDGTGALPIHLAVQEGHTAVVSFLAAES  124 (156)
T ss_dssp             CSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTS
T ss_pred             ccccccCCCCeeeccccccccccccccccccc
Confidence            99999999999999999999999999998765

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.46  E-value=2.6e-13  Score=104.61  Aligned_cols=73  Identities=25%  Similarity=0.302  Sum_probs=65.7

Q ss_pred             HHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          175 DEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       175 ~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ..|...+  .+++..+..|+||||+++..+...+++.|++++++++.+|..|.||||+|+..|+.++|++|+++.
T Consensus       107 ~~L~~~~--~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~Ll~~g  179 (209)
T d1ot8a_         107 EDLITAD--ADINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKALLDNF  179 (209)
T ss_dssp             HHHHHTT--CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             hhhhhhc--ccccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHHHHHCC
Confidence            3345544  567888999999999999999999999999999999999999999999999999999999999863

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.5e-14  Score=107.30  Aligned_cols=91  Identities=20%  Similarity=0.255  Sum_probs=66.1

Q ss_pred             CcHHHHHHHHhcCCCcHH-HHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHH
Q 025512          155 DQIEERMAKIKEDPSLKP-ILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVA  233 (251)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~-~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A  233 (251)
                      +.++.++++..++.++++ ++..+...+  .+++.+|..|+||||+|+..|+.+++++|+++|++++..+..|.++++.|
T Consensus         3 G~TpLh~A~~~g~~~~v~~Ll~~~~~~g--~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a   80 (228)
T d1k1aa_           3 GDTPLHIAVVQGNLPAVHRLVNLFQQGG--RELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLA   80 (228)
T ss_dssp             TCCHHHHHHHTTCHHHHHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHH
T ss_pred             CccHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCccCCCCCccceehhcccccccccccccccccccccccccccccccc
Confidence            455666666655544433 333344454  56777888888888888888888888888888888888888888888888


Q ss_pred             HHcCCHHHHHHHHh
Q 025512          234 KLNSQHDVLKLLEK  247 (251)
Q Consensus       234 ~~~g~~~iv~~Ll~  247 (251)
                      ...++..+++.+..
T Consensus        81 ~~~~~~~~~~~~~~   94 (228)
T d1k1aa_          81 CEHRSPTCLRALLD   94 (228)
T ss_dssp             HHTTCHHHHHHHHH
T ss_pred             cccccccchhhhhh
Confidence            88888887776654

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.42  E-value=1.8e-14  Score=120.71  Aligned_cols=103  Identities=14%  Similarity=0.054  Sum_probs=79.7

Q ss_pred             HHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCcccccc--CCCCchHHHHHHHcCCHHHHHHHHHCCCCC--
Q 025512          144 MMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYW--NDKDNTALHYAAGYGRKECVALLLENGAAV--  219 (251)
Q Consensus       144 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~--d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~--  219 (251)
                      +++.+++++..+..+.+...++...+..+++++|+..|.  +++..  +.+|+||||+||..||.++|++|++.|++.  
T Consensus       112 L~~~~~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~--~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~  189 (346)
T d2ajaa1         112 LLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAP--TEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT  189 (346)
T ss_dssp             C--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCT--TTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHH
T ss_pred             HHhCCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCC--CccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccc
Confidence            455677777777777666666666777888999998874  44444  456999999999999999999999999865  


Q ss_pred             -CCCCCCCCcHHHHHHHcCCHHHHHHHHhC
Q 025512          220 -TLQNMDGKTPIDVAKLNSQHDVLKLLEKD  248 (251)
Q Consensus       220 -~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~  248 (251)
                       +..+..|.||++.|+..||.+||++|+++
T Consensus       190 ~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~  219 (346)
T d2ajaa1         190 AMIQAENYYAFRWAAVGRGHHNVINFLLDC  219 (346)
T ss_dssp             HHHHHHHHHHHHHHHSTTCCHHHHHHHTTS
T ss_pred             cccccCCCcchhhHHhhcCHHHHHHHHHhC
Confidence             34456678888899999999999999875

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.42  E-value=8.9e-13  Score=103.00  Aligned_cols=77  Identities=26%  Similarity=0.273  Sum_probs=68.2

Q ss_pred             CcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCC-CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHh
Q 025512          169 SLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENG-AAVTLQNMDGKTPIDVAKLNSQHDVLKLLEK  247 (251)
Q Consensus       169 ~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~G-ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~  247 (251)
                      ...+++..|+..+  ...+..|..|+||||+|+..|+.+++++|+++| .+++.+|..|+||||+|+..|+.++|++|++
T Consensus       116 ~~~~~~~~l~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~  193 (229)
T d1ixva_         116 KWFEVSQFLIENG--ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVE  193 (229)
T ss_dssp             TCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred             chhhhhhhhhhhc--ccccccCCCCCCccchhhhcccccccccccccccccccccccccCCchhhhcccccHHHHHHHHH
Confidence            3456677777766  456778999999999999999999999999997 7899999999999999999999999999985

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=3.5e-14  Score=109.53  Aligned_cols=72  Identities=28%  Similarity=0.340  Sum_probs=62.8

Q ss_pred             cHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCCHHHHH
Q 025512          170 LKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQHDVLK  243 (251)
Q Consensus       170 ~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~  243 (251)
                      ...+++.++..+  ..++.+|..|+||||+|+..|+.+++++|+++|+|++.+|..|+||||+|++.|+.+||+
T Consensus       156 ~~~~~~~~~~~~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         156 SLSMVQLLLQHG--ANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CHHHHHHHHHTT--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             hhhhhhhhhhhc--cccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            344555566655  557788999999999999999999999999999999999999999999999999988875

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=5.6e-14  Score=109.89  Aligned_cols=90  Identities=22%  Similarity=0.334  Sum_probs=70.7

Q ss_pred             HHHHHHHhcCCCc-HHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHc
Q 025512          158 EERMAKIKEDPSL-KPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLN  236 (251)
Q Consensus       158 ~~~~~~~~~~~~~-~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~  236 (251)
                      ..|.++..++..+ ..+++++...+  .++|.+|.+|+||||+|+..|+.+++++|+++|++++.+|..|+||||+++..
T Consensus         5 ~Lh~A~~~g~~~~~~~li~~~~~~~--~~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g~d~~~~d~~g~t~l~~~~~~   82 (221)
T d1iknd_           5 FLHLAIIHEEKALTMEVIRQVKGDL--AFLNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQ   82 (221)
T ss_dssp             TTHHHHHTTCSSSSSCCCC-----C--CCCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCCCCSCCCCTTCCCHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhCC--CCcccCCCCCCcccccccccccccccccccccccccccccccccccccccccc
Confidence            3455555554432 33444455544  56888999999999999999999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHhCC
Q 025512          237 SQHDVLKLLEKDA  249 (251)
Q Consensus       237 g~~~iv~~Ll~~~  249 (251)
                      ++.+++++|++..
T Consensus        83 ~~~~~~~~l~~~~   95 (221)
T d1iknd_          83 GCLASVGVLTQSC   95 (221)
T ss_dssp             TCHHHHHHHHHST
T ss_pred             ccccccchhhhhc
Confidence            9999999998754

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.33  E-value=1.1e-12  Score=107.34  Aligned_cols=63  Identities=19%  Similarity=0.221  Sum_probs=54.6

Q ss_pred             cccccc-CCCCchHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHcCC-------HHHHHHHH
Q 025512          184 AMMKYW-NDKDNTALHYAAGYGRKECVALLLENGAAVTLQNMDGKTPIDVAKLNSQ-------HDVLKLLE  246 (251)
Q Consensus       184 ~~v~~~-d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~~A~~~g~-------~~iv~~Ll  246 (251)
                      .++|.. |.+|+||||+||..|+.++|++|+++|||++.+|..|+||||+|+..++       .+++++|.
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~  167 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY  167 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh
Confidence            456654 8999999999999999999999999999999999999999999998765       24555554

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.29  E-value=1.3e-11  Score=90.28  Aligned_cols=106  Identities=23%  Similarity=0.207  Sum_probs=79.3

Q ss_pred             hHHHHHHHhcCCCC--ccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCC
Q 025512          139 PSMSHMMESLTNPT--KKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENG  216 (251)
Q Consensus       139 ~~~~~ll~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~G  216 (251)
                      ..+..+++.+++.+  ..+....+.+....+   .+++..+....  ......+..+.+++++++...+.+++++|+.+|
T Consensus        16 ~~v~~LL~~ga~~~~~~~g~t~L~~a~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~   90 (153)
T d1awcb_          16 DEVRILMANGAPFTTDWLGTSPLHLAAQYGH---FSTTEVLLRAG--VSRDARTKVDRTPLHMAASEGHANIVEVLLKHG   90 (153)
T ss_dssp             HHHHHHHHHTCCCCCCTTCCCHHHHHHHHTC---HHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCCcccccCCCccccccccccc---ccccccccccc--ccccccccccccccccccccccceeeecccccC
Confidence            44455555555432  234445555554433   45555555554  334455677899999999999999999999999


Q ss_pred             CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          217 AAVTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       217 ad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ++++.+|..|+||||+|+..|+.+||++|+++.
T Consensus        91 ~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~g  123 (153)
T d1awcb_          91 ADVNAKDMLKMTALHWATEHNHQEVVELLIKYG  123 (153)
T ss_dssp             CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CccccccccCchHHHhhhhcchhheeeeccccc
Confidence            999999999999999999999999999999864

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.7e-11  Score=89.94  Aligned_cols=108  Identities=18%  Similarity=0.235  Sum_probs=82.3

Q ss_pred             hHHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCC
Q 025512          139 PSMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAA  218 (251)
Q Consensus       139 ~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad  218 (251)
                      ..+..+++.+.+++..+..+.+...++.. ...+++++|+..+  .+++..+..|.++|+.++..++.+++++|+.++.+
T Consensus        15 ~~v~~Ll~~g~d~n~~d~~g~TpL~~A~~-~~~ei~~~Ll~~~--a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~   91 (156)
T d1ihba_          15 EQLTSLLQNNVNVNAQNGFGRTALQVMKL-GNPEIARRLLLRG--ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD   91 (156)
T ss_dssp             HHHHHHTTSCCCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCCcCccCCccccccccccc-ccccccccccccc--cccccccccCccccccccccccccccccccccccc
Confidence            34444444555554443333332233332 3467788888876  66788899999999999999999999999999999


Q ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC
Q 025512          219 VTLQNMDGKTPIDVAKLNSQHDVLKLLEKDA  249 (251)
Q Consensus       219 ~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~~  249 (251)
                      ++..+..|.+|||+|+..++.+++++|+++.
T Consensus        92 ~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~  122 (156)
T d1ihba_          92 VNIEDNEGNLPLHLAAKEGHLRVVEFLVKHT  122 (156)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999988653

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=4.6e-11  Score=95.82  Aligned_cols=84  Identities=11%  Similarity=0.099  Sum_probs=62.3

Q ss_pred             HHHHHHHhcCCCCccCcHHHHHHHHhcCCCcHHHHHHHHhcCCCccccccCCCCchHHHHHHHcCCHHHHHHHHHCCCCC
Q 025512          140 SMSHMMESLTNPTKKDQIEERMAKIKEDPSLKPILDEIESGGPSAMMKYWNDKDNTALHYAAGYGRKECVALLLENGAAV  219 (251)
Q Consensus       140 ~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~~~v~~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~Gad~  219 (251)
                      .+..+++.+++++..+..+.+........+..+++++|+... ..+++.+|.+|+||||+|+..|+.++|++||++|||+
T Consensus       201 i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~-g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~  279 (285)
T d1wdya_         201 ITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE-HIEINDTDSDGKTALLLAVELKLKKIAELLCKRGAST  279 (285)
T ss_dssp             HHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS-SCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCS
T ss_pred             HHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC-CCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCC
Confidence            455667788888766544433222222333456777777532 2678999999999999999999999999999999999


Q ss_pred             CCCCC
Q 025512          220 TLQNM  224 (251)
Q Consensus       220 ~~~d~  224 (251)
                      |++|.
T Consensus       280 n~~d~  284 (285)
T d1wdya_         280 DCGDL  284 (285)
T ss_dssp             CCSSC
T ss_pred             CcccC
Confidence            99884