Citrus Sinensis ID: 025516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-
Protein Sequence
MEALEYHDALELFSRHAFKQNHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYRRH
Secondary Structure (PSIPRED)
ccEEEccHHHHHHHHHHHHHccccHHHHHccccccccEEEEEEEcccccEEEccHHHHHccccccEEEEcccccccccccccccccccccccccEEEEccccccccccccccccccEEEccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccEEccccccccccccccccccccEEEcccccccccccccccccccccEEEEccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEHHHHHHHHHHHHHHHccHHHHHHHHccccccEEEEEEEEccccccccccHHHHHHccccEEEEEEccccccccEccccccccccHHHHcEEEccccccccccccccHHHHEEEccccccHHHHccccccEEEEccccccHHcccccHHccHcccEEEcccccHHcccccccHHHHHEEcccccccEEcccHHHHHHcccEEcccccccHccccccHccHHHHcEEcccccHHHHcccccccccccc
Coil and Loop (DISEMBL)
MEALEYHDALELFSrhafkqnhpDVVYEELSSKGTEKIEGICLdlskvkeiplnpntFAKMRKLRFLKFYsssfngenrckvshlQDLRFAEVKYLhwhgyplkslpsnhsaeklmflevpnsdiEQLWNSVKLVILNlsgskslkslpagifNLEFLteldlsgcsklkrlpeissgnigqlflsgtaieeLPSSFELLLRLWLLDlsdckrlkslpsslcklkslellslrgcsnlqrlPDRLASYRRH
Flexible Loop (DISEMBL)
MEALEYHDALELfsrhafkqnHPDVVYEELSSKGTEKIEGICLdlskvkeiplnpntfakmrKLRFLKFYSSsfngenrckVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSlpsslcklkslellslrgcsnlqrlpdrlasyrrh
Low Complexity Region (SEG)
MEALEYHDALELFSRHAFKQNHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVIlnlsgskslkslPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIeelpssfelllrlwlldlsDCkrlkslpsslcklkslellslRGCSNLQRLPDRLASYRRH
Disordered region (IsUnstruct)
*******DALELFSRHAFKQNHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL*************
Disordered Region (DISOPRED)
MEALEYHDALELFSRHAFKQNHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGEN*CKVS*LQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY***
Disordered Region (DISEMBL)
MEALEYHDALELFSRHAFKQNHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYRRH
Disordered Region (DISPRO)
*EALEYHDALELFSRHAFKQNHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP*R*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEALEYHDALELFSRHAFKQNHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYRRH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	251	2.2.26 [Sep-21-2011]
Q9SZ67	1895	Probable WRKY transcripti	no	no	0.836	0.110	0.350	1e-28
O82500	1095	Putative disease resistan	no	no	0.737	0.168	0.336	2e-19
Q9FH83	1288	Probable WRKY transcripti	no	no	0.812	0.158	0.302	5e-16
O23530	1301	Protein SUPPRESSOR OF npr	no	no	0.784	0.151	0.319	1e-15
Q9FL92	1372	Probable WRKY transcripti	no	no	0.788	0.144	0.282	9e-15
Q9FKN7	1613	Protein DA1-related 4 OS=	no	no	0.848	0.132	0.296	8e-13
Q40392	1144	TMV resistance protein N	N/A	no	0.482	0.105	0.401	3e-12
Q9RBS2	1024	Protein PopC OS=Ralstonia	no	no	0.649	0.159	0.315	5e-08
O81825	919	Probable disease resistan	no	no	0.597	0.163	0.325	1e-07
Q9FKZ0	815	Probable disease resistan	no	no	0.737	0.226	0.279	2e-07

>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1

 Score =  127 bits (318), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/274 (35%), Positives = 134/274 (48%), Gaps = 64/274 (23%)

Query: 30   LSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLR 89
            ++  GT  IEGI LD+  +K    NPN F KM  LR LK Y S    E +  VS  Q L 
Sbjct: 1145 INDTGTSAIEGIFLDMLNLK-FDANPNVFEKMCNLRLLKLYCS--KAEEKHGVSFPQGLE 1201

Query: 90   F--AEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV------------KLV 135
            +  ++++ LHW  YPL SLP + + E L+ L +P+S  ++LW               KL 
Sbjct: 1202 YLPSKLRLLHWEYYPLSSLPKSFNPENLVELNLPSSCAKKLWKGKKARFCTTNSSLEKLK 1261

Query: 136  ILNLSGSKSLKSLP---------------------------------------------- 149
             + LS S  L  +P                                              
Sbjct: 1262 KMRLSYSDQLTKIPRLSSATNLEHIDLEGCNSLLSLSQSISYLKKLVFLNLKGCSKLENI 1321

Query: 150  AGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLS 209
              + +LE L  L+LSGCSKL   PEIS  N+ +L++ GT I+E+PSS + L+ L  LDL 
Sbjct: 1322 PSMVDLESLEVLNLSGCSKLGNFPEISP-NVKELYMGGTMIQEIPSSIKNLVLLEKLDLE 1380

Query: 210  DCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD 243
            + + LK+LP+S+ KLK LE L+L GC +L+R PD
Sbjct: 1381 NSRHLKNLPTSIYKLKHLETLNLSGCISLERFPD 1414

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May act also as a disease resistance protein with a serine/threonine-protein kinase activity.
Arabidopsis thaliana (taxid: 3702)

>sp|O82500|Y4117_ARATH Putative disease resistance protein At4g11170 OS=Arabidopsis thaliana GN=At4g11170 PE=2 SV=1

 Score = 96.3 bits (238), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 76/226 (33%), Positives = 120/226 (53%), Gaps = 41/226 (18%)

Query: 31  SSKGTEKIEGICLDLSKVKE-IPLNPNTFAKMRKLRFLKFY-SSSFNGENRCKV------ 82
           ++ GT  + GI LD+ ++KE + ++  TF +MR L +LKFY SS  + + + K+      
Sbjct: 522 NNTGTGTVLGISLDMCEIKEELYISEKTFEEMRNLVYLKFYMSSPIDDKMKVKLQLPEEG 581

Query: 83  -SHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVK----LVIL 137
            S+L  LR      LHW  YPL+  PS+   E L+ L + +S +++LW+ V+    L  +
Sbjct: 582 LSYLPQLRL-----LHWDAYPLEFFPSSFRPECLVELNMSHSKLKKLWSGVQPLRNLRTM 636

Query: 138 NLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSF 197
           NL+ S++L+ LP  +     L  LDL  C  L                      ELPSS 
Sbjct: 637 NLNSSRNLEILP-NLMEATKLNRLDLGWCESLV---------------------ELPSSI 674

Query: 198 ELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD 243
           + L  L LL++S CK+L+ +P+++  L SLE+L  R C+ LQ  P+
Sbjct: 675 KNLQHLILLEMSCCKKLEIIPTNI-NLPSLEVLHFRYCTRLQTFPE 719

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FH83|WRK52_ARATH Probable WRKY transcription factor 52 OS=Arabidopsis thaliana GN=WRKY52 PE=2 SV=3

 Score = 84.7 bits (208), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 83/274 (30%), Positives = 120/274 (43%), Gaps = 70/274 (25%)

Query: 32  SKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSS--FNGENRCKVSHLQDLR 89
           ++G+E+IEG+ LD S ++   L P+ F  M  LR LK Y S+   +         L  L 
Sbjct: 495 AQGSEEIEGLFLDTSNLR-FDLQPSAFKNMLNLRLLKIYCSNPEVHPVINFPTGSLHSLP 553

Query: 90  FAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVK---------------- 133
             E++ LHW  YPLKSLP N     L+ + +P S +++LW   K                
Sbjct: 554 -NELRLLHWENYPLKSLPQNFDPRHLVEINMPYSQLQKLWGGTKNLEMLRTIRLCHSHHL 612

Query: 134 -----------LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQ 182
                      L +++L G   L++ PA    L  L  ++LSGC K+K + EI   NI +
Sbjct: 613 VDIDDLLKAENLEVIDLQGCTRLQNFPAA-GRLLRLRVVNLSGCIKIKSVLEIPP-NIEK 670

Query: 183 LFLSGTAIEELP-----------------------------------SSFELLLRLWLLD 207
           L L GT I  LP                                   SS + L +L  L+
Sbjct: 671 LHLQGTGILALPVSTVKPNHRELVNFLTEIPGLSEELERLTSLLESNSSCQDLGKLICLE 730

Query: 208 LSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRL 241
           L DC  L+SLP ++  L  L +L L GCS+L  +
Sbjct: 731 LKDCSCLQSLP-NMANL-DLNVLDLSGCSSLNSI 762

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Acts also as a disease resistance protein conferring resistance to Ralstonia solanacearum.

Arabidopsis thaliana (taxid: 3702)

>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3

 Score = 83.6 bits (205), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 76/238 (31%), Positives = 112/238 (47%), Gaps = 41/238 (17%)

Query: 14  SRHAFKQNHPDVVYEELSSKGTEKIEGICLDLSK---VKEIPLNPNTFAKMRKLRFLKFY 70
            +  F  N  D+        GTE + GI L   +    + + ++  +F  MR L++L+  
Sbjct: 495 GKRRFLTNFEDIHEVVTEKTGTETLLGIRLPFEEYFSTRPLLIDKESFKGMRNLQYLEI- 553

Query: 71  SSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWN 130
              + G+    + +L      +++ L W   PLKSLPS   AE L+ L +  S +E+LW 
Sbjct: 554 --GYYGDLPQSLVYLP----LKLRLLDWDDCPLKSLPSTFKAEYLVNLIMKYSKLEKLWE 607

Query: 131 SV----KLVILNLSGSKSLKSLP--AGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLF 184
                  L  +NL  S +LK +P  +   NLE   ELDL GC  L  LP           
Sbjct: 608 GTLPLGSLKEMNLRYSNNLKEIPDLSLAINLE---ELDLVGCKSLVTLP----------- 653

Query: 185 LSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242
                     SS +   +L  LD+SDCK+L+S P+ L  L+SLE L+L GC NL+  P
Sbjct: 654 ----------SSIQNATKLIYLDMSDCKKLESFPTDL-NLESLEYLNLTGCPNLRNFP 700

Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL92|WRK16_ARATH Probable WRKY transcription factor 16 OS=Arabidopsis thaliana GN=WRKY16 PE=2 SV=1

 Score = 80.5 bits (197), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 79/280 (28%), Positives = 119/280 (42%), Gaps = 82/280 (29%)

Query: 36  EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSS-----FNGENRCKVSHLQDLRF 90
           E+IEG+ LD S +    +    F  M  LR  K YSS+      N   +  +S L ++  
Sbjct: 492 EEIEGMFLDTSNLS-FDIKHVAFDNMLNLRLFKIYSSNPEVHHVNNFLKGSLSSLPNV-- 548

Query: 91  AEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVK----------------- 133
             ++ LHW  YPL+ LP N     L+ + +P S +++LW   K                 
Sbjct: 549 --LRLLHWENYPLQFLPQNFDPIHLVEINMPYSQLKKLWGGTKDLEMLKTIRLCHSQQLV 606

Query: 134 ----------LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQL 183
                     L +++L G   L+S PA    L  L  ++LSGC+++K  PEI   NI  L
Sbjct: 607 DIDDLLKAQNLEVVDLQGCTRLQSFPA-TGQLLHLRVVNLSGCTEIKSFPEIPP-NIETL 664

Query: 184 FLSGTAIEELP------------------------------------------SSFELLL 201
            L GT I ELP                                          +S++   
Sbjct: 665 NLQGTGIIELPLSIVKPNYRELLNLLAEIPGLSGVSNLEQSDLKPLTSLMKISTSYQNPG 724

Query: 202 RLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRL 241
           +L  L+L+DC RL+SLP ++  L+ L+ L L GCS L+ +
Sbjct: 725 KLSCLELNDCSRLRSLP-NMVNLELLKALDLSGCSELETI 763

Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. May also act as a disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 83/280 (29%), Positives = 123/280 (43%), Gaps = 67/280 (23%)

Query: 27  YEELSSKG-----------TEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSS-- 73
           Y+EL   G            E IE I LD S VK   +  + F  M  L+FLK Y+S   
Sbjct: 497 YDELEGSGETKAMPKSGLVAEHIESIFLDTSNVK-FDVKHDAFKNMFNLKFLKIYNSCSK 555

Query: 74  -FNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV 132
             +G N  K   L  L + E++ LHW  YPL+SLP +     L+ L +P S + +L   V
Sbjct: 556 YISGLNFPK--GLDSLPY-ELRLLHWENYPLQSLPQDFDFGHLVKLSMPYSQLHKLGTRV 612

Query: 133 KLVIL--NLSGSKSLKSLPAGIF----NLEFLTELDLSGCSKLKRLPEIS---------- 176
           K +++   L  S SL+ +   I     N+E    +DL GC+ L+R P+ S          
Sbjct: 613 KDLVMLKRLILSHSLQLVECDILIYAQNIEL---IDLQGCTGLQRFPDTSQLQNLRVVNL 669

Query: 177 SG------------NIGQLFLSGTAIEELP------------------SSFELLLRLWLL 206
           SG            NI +L L GT I E+P                  +  E    +  +
Sbjct: 670 SGCTEIKCFSGVPPNIEELHLQGTRIREIPIFNATHPPKVKLDRKKLWNLLENFSDVEHI 729

Query: 207 DLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLA 246
           DL     L ++ S+   +  L  L+++ CSNL+ LPD ++
Sbjct: 730 DLECVTNLATVTSNNHVMGKLVCLNMKYCSNLRGLPDMVS 769

Arabidopsis thaliana (taxid: 3702)

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 72.0 bits (175), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 53/132 (40%), Positives = 79/132 (59%), Gaps = 11/132 (8%)

Query: 123 SDIEQLWNSV----KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSG 178
           S++E++ +S+    K++ L L+  KSLK  P    N+E L  L L  C  L++LPEI  G
Sbjct: 653 SNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPC--VNVESLEYLGLRSCDSLEKLPEIY-G 709

Query: 179 NIG---QLFLSGTAIEELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234
            +    Q+ + G+ I ELPSS F+    +  L L + K L +LPSS+C+LKSL  LS+ G
Sbjct: 710 RMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSG 769

Query: 235 CSNLQRLPDRLA 246
           CS L+ LP+ + 
Sbjct: 770 CSKLESLPEEIG 781

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.

Nicotiana glutinosa (taxid: 35889)

>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2

 Score = 58.5 bits (140), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 54/171 (31%), Positives = 87/171 (50%), Gaps = 8/171 (4%)

Query: 82  VSHLQDLRFAEVKYLHWHGYPLKSLPS-NHSAEKLMFLEVPNSDIEQLWNSVK----LVI 136
           V HL+ +       +     P+  LP        L  LE  + D+  L  +++    L  
Sbjct: 192 VDHLKSVLRMSGDSVQLKSLPVPELPDVTFEIAHLKNLETVDCDLHALPATLENLFLLET 251

Query: 137 LNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGN-IGQLFLSGTAIEELPS 195
           L+L G+K+ K+LP  ++ L  L EL LS    LK LP +  G+ + +L +  + +E+LP+
Sbjct: 252 LSLKGAKNFKALPDAVWRLPALQELKLSETG-LKSLPPVGGGSALQRLTIEDSPLEQLPA 310

Query: 196 SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLA 246
            F  L +L  L LS+ K L+ L S + +L +L+ LSL+    L+RLP  L 
Sbjct: 311 GFADLDQLASLSLSNTK-LEKLSSGIGQLPALKSLSLQDNPKLERLPKSLG 360

Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway.

Ralstonia solanacearum (strain GMI1000) (taxid: 267608)

>sp|O81825|DRL28_ARATH Probable disease resistance protein At4g27220 OS=Arabidopsis thaliana GN=At4g27220 PE=2 SV=1

 Score = 56.6 bits (135), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 84/160 (52%), Gaps = 10/160 (6%)

Query: 86  QDLRFAEVKYLHWHGYPLKSLPSN--HSAEKLMFLEVPNSDIEQLWNSV-----KLVILN 138
           QD   + V+ +      L+ LP+N     E L+ L   NS ++++ N        L IL+
Sbjct: 465 QDKFVSSVQRVSLMANKLERLPNNVIEGVETLVLLLQGNSHVKEVPNGFLQAFPNLRILD 524

Query: 139 LSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISS-GNIGQLFLSGTAIEELPSSF 197
           LSG + +++LP    NL  L  L L  C KL+ LP + S   +  L L  +AI ELP   
Sbjct: 525 LSGVR-IRTLPDSFSNLHSLRSLVLRNCKKLRNLPSLESLVKLQFLDLHESAIRELPRGL 583

Query: 198 ELLLRLWLLDLSDCKRLKSLPS-SLCKLKSLELLSLRGCS 236
           E L  L  + +S+  +L+S+P+ ++ +L SLE+L + G +
Sbjct: 584 EALSSLRYICVSNTYQLQSIPAGTILQLSSLEVLDMAGSA 623

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ0|DRL43_ARATH Probable disease resistance protein At5g66910 OS=Arabidopsis thaliana GN=At5g66910 PE=2 SV=1

 Score = 56.2 bits (134), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 97/204 (47%), Gaps = 19/204 (9%)

Query: 55  PNTFAKMRKLRFLKFYSSSF------NGENRCKVSHLQDLRFAEVKYL-----HWHGYPL 103
           P+  A+M+KL+ L   +  F      N      + +L+ +RF +V              L
Sbjct: 569 PSFIAEMKKLKVLTIANHGFYPARLSNFSCLSSLPNLKRIRFEKVSVTLLDIPQLQLGSL 628

Query: 104 KSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDL 163
           K L     +   +F +  + D+ +  ++++ +  ++     L  LP  I  +  L  L +
Sbjct: 629 KKLSFFMCSFGEVFYDTEDIDVSKALSNLQEI--DIDYCYDLDELPYWIPEVVSLKTLSI 686

Query: 164 SGCSKLKRLPEISSGNIGQL----FLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPS 219
           + C+KL +LPE + GN+ +L      S   + ELP + E L  L  LD+S C  L+ LP 
Sbjct: 687 TNCNKLSQLPE-AIGNLSRLEVLRMCSCMNLSELPEATERLSNLRSLDISHCLGLRKLPQ 745

Query: 220 SLCKLKSLELLSLRGCSNLQRLPD 243
            + KL+ LE +S+R CS  + LPD
Sbjct: 746 EIGKLQKLENISMRKCSGCE-LPD 768

Probable disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
255537137	1034	leucine-rich repeat containing protein,	0.880	0.213	0.403	2e-39
317415950	807	nematode resistance-like protein [Prunus	0.868	0.270	0.417	3e-38
317415955	806	nematode resistance-like protein [Prunus	0.868	0.270	0.425	4e-38
224127913	467	predicted protein [Populus trichocarpa]	0.820	0.441	0.438	2e-36
255563202	1158	leucine-rich repeat containing protein,	0.964	0.208	0.381	4e-36
225460354	1174	PREDICTED: TMV resistance protein N-like	0.864	0.184	0.378	8e-36
359496030	1195	PREDICTED: TMV resistance protein N-like	0.984	0.206	0.336	1e-35
224127754	1125	tir-nbs-lrr resistance protein [Populus	0.872	0.194	0.360	2e-35
359496026	1250	PREDICTED: TMV resistance protein N-like	0.880	0.176	0.392	1e-34
297744796	596	unnamed protein product [Vitis vinifera]	0.896	0.377	0.349	2e-34

>gi|255537137|ref|XP_002509635.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223549534|gb|EEF51022.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 103/255 (40%), Positives = 153/255 (60%), Gaps = 34/255 (13%)

Query: 21  NHPDVVYEELSSKGTEKIEGICLDLSKVKEI-PLNPNTFAKMRKLRFLKFYSSSFNGEN- 78
           +H D++     + GTE IE I LD+SK+ EI  LNPN FA+M  L+ L+FY  +F+    
Sbjct: 525 DHEDILRVLTRNAGTEAIEAIFLDMSKIDEIIDLNPNVFARMSNLKLLRFYDPNFDSREL 584

Query: 79  ---RCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQL------- 128
              + ++S   D   ++++YL+W+GYP K+LP+N   + L+ L +P+S +++L       
Sbjct: 585 KDIKVRLSRGLDSLSSKLQYLYWNGYPSKTLPANFHPKDLVELHLPSSKLKRLPWKNMDL 644

Query: 129 ---------WNS-----------VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSK 168
                    W+S             L  +NLS SK ++  P+ I  L+ L  L+LS C K
Sbjct: 645 KKLKEIDLSWSSRLTTVPELSRATNLTCINLSDSKRIRRFPSTI-GLDSLETLNLSDCVK 703

Query: 169 LKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLE 228
           L+R P++S  +I  L+L GTAIEE+PSS   L RL  L+L DC +LKSLP+S+CK+KSLE
Sbjct: 704 LERFPDVSR-SIRFLYLYGTAIEEVPSSVGCLSRLVSLNLFDCTKLKSLPTSICKIKSLE 762

Query: 229 LLSLRGCSNLQRLPD 243
           LL L GC+NL+  P+
Sbjct: 763 LLCLSGCTNLKHFPE 777

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317415950|emb|CAR94516.1| nematode resistance-like protein [Prunus cerasifera]

 Score =  164 bits (415), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/256 (41%), Positives = 145/256 (56%), Gaps = 38/256 (14%)

Query: 22  HPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCK 81
           H + ++    +KGT+ ++GI L L   +++ L  + F+ M  LR LK Y+  F+G   C 
Sbjct: 530 HTEAIHVLKGNKGTDAVQGIFLSLPHPEKVHLKKDPFSNMDNLRLLKIYNVEFSG---C- 585

Query: 82  VSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-----KLVI 136
           + +L D    E+ +L WH YPLKSLPS+   +KL+ L +  S+IEQLW  +     KL+I
Sbjct: 586 LEYLSD----ELSFLEWHKYPLKSLPSSFEPDKLVELNLSESEIEQLWEEIERPLEKLLI 641

Query: 137 LNLSGSKSLKSLP----------------------AGIFNLEFLTELDLSGCSKLKRLPE 174
           LNLS  + L  +P                        I NL  LT  +LSGCSKL+++PE
Sbjct: 642 LNLSDCQKLIKIPDFDKVPNLEQLILKGCTSLSEVPDIINLRSLTNFNLSGCSKLEKIPE 701

Query: 175 ISSG--NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCK-LKSLELLS 231
           I      + +L L GTAIEELP+S E L  L LLDL DCK L SLP   C  L SL++L+
Sbjct: 702 IGEDMKQLRKLHLDGTAIEELPTSIEHLSGLTLLDLRDCKNLLSLPDVFCDSLTSLQILN 761

Query: 232 LRGCSNLQRLPDRLAS 247
           L GCSNL +LPD L S
Sbjct: 762 LSGCSNLDKLPDNLGS 777

Source: Prunus cerasifera

Species: Prunus cerasifera

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317415955|emb|CAR94520.1| nematode resistance-like protein [Prunus cerasifera]

 Score =  164 bits (414), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/256 (42%), Positives = 144/256 (56%), Gaps = 38/256 (14%)

Query: 22  HPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCK 81
           H + ++    +KGT+ ++GI L L    ++ L  + F+ M  LR LK Y+  F+G   C 
Sbjct: 530 HTEAIHVLKGNKGTDAVQGIFLSLPHPDKVHLKKDPFSNMDNLRLLKIYNVEFSG---C- 585

Query: 82  VSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-----KLVI 136
           + +L D    E+ +L WH YPLKSLPS+   +KL+ L +  S+IEQLW  +     KL+I
Sbjct: 586 LEYLSD----ELSFLEWHKYPLKSLPSSFEPDKLVELNLSESEIEQLWEEIERPLEKLLI 641

Query: 137 LNLSGSKSLKSLP----------------------AGIFNLEFLTELDLSGCSKLKRLPE 174
           LNLS  + L  +P                        I NL  LT   LSGCSKL++LPE
Sbjct: 642 LNLSDCQKLIKIPDFDKVPNLEQLILKGCTSLSEVPDIINLRSLTNFILSGCSKLEKLPE 701

Query: 175 ISSG--NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCK-LKSLELLS 231
           I      + +L L GTAIEELP+S E L  L LLDL DCK L SLP  LC  L SL++L+
Sbjct: 702 IGEDMKQLRKLHLDGTAIEELPTSIEHLSGLTLLDLRDCKNLLSLPDVLCDSLTSLQVLN 761

Query: 232 LRGCSNLQRLPDRLAS 247
           L GCSNL +LPD L S
Sbjct: 762 LSGCSNLDKLPDNLGS 777

Source: Prunus cerasifera

Species: Prunus cerasifera

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127913|ref|XP_002329208.1| predicted protein [Populus trichocarpa] gi|222870989|gb|EEF08120.1| predicted protein [Populus trichocarpa]

 Score =  158 bits (400), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 96/219 (43%), Positives = 137/219 (62%), Gaps = 13/219 (5%)

Query: 33  KGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRF-- 90
           KGTEK+EGI  D SK+KEI L+   FA+M  LR LK Y+S   G+N CKV H   L+   
Sbjct: 55  KGTEKVEGIFFDTSKIKEIKLSSKAFARMYNLRLLKIYNSEV-GKN-CKVYHPNGLKSLS 112

Query: 91  AEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPA 150
            E++YLHW GYPLKSLPSN   E L+ L + +S + +LW   + +  +   SK++KS   
Sbjct: 113 DELRYLHWDGYPLKSLPSNFHPENLVELNLSHSKVRELWKGDQKLHKHFESSKNIKS--- 169

Query: 151 GIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSD 210
                ++L  L+LSGCS LK  PE ++ ++  L  + TAI+ELP S   L RL  L+L +
Sbjct: 170 -----KYLKALNLSGCSNLKMYPE-TTEHVMYLNFNETAIKELPQSIGHLSRLVALNLRE 223

Query: 211 CKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249
           CK+L +LP S+C LKS+ ++ + GCSN+ + P+   + R
Sbjct: 224 CKQLGNLPDSICLLKSIVIVDVSGCSNVTKFPNIPGNTR 262

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255563202|ref|XP_002522604.1| leucine-rich repeat containing protein, putative [Ricinus communis] gi|223538080|gb|EEF39691.1| leucine-rich repeat containing protein, putative [Ricinus communis]

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 103/270 (38%), Positives = 152/270 (56%), Gaps = 28/270 (10%)

Query: 4   LEYHDALELFSRHAFKQN-----------HPDVVYEELS-SKGTEKIEGICLDLSKVKEI 51
           L+ HD L+   R   +Q            +PD +Y+ L  + GTE I GI L +S+ +++
Sbjct: 523 LKMHDLLQEMGREIVRQESKRPSERSRLWNPDDIYKVLEENTGTEAIVGILLGMSEARKL 582

Query: 52  PLNPNTFAKMRKLRFLKFYSSSFNG--ENRCKVSHLQDLRF--AEVKYLHWHGYPLKSLP 107
            LN N F ++  L+FL    S+  G  E  CKV   + L     +++YL+WHGYPLK LP
Sbjct: 583 ELNRNAFTRISNLKFLILRMSNNCGGFEEECKVQFPEGLESLPQQLRYLYWHGYPLKFLP 642

Query: 108 SNHSAEKLMFLEVPNSDIEQLWNS----------VKLVILNLSGSKSLKSLPAGIFNLEF 157
           +N     L+ L  P S +E LW             KL  ++L  SK+++S P  I +L+ 
Sbjct: 643 ANFHPTNLIELNFPYSRLEGLWEGDKVPSSIGQLTKLTFMSLRCSKNIRSFPTTI-DLQS 701

Query: 158 LTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSL 217
           L  LDLSGCS LK  PE+S  NI  L+L+ TAI+E+P S E L +L +L++ +C  L+ +
Sbjct: 702 LETLDLSGCSNLKIFPEVSR-NIRYLYLNETAIQEVPLSIEHLSKLVVLNMKNCNELECI 760

Query: 218 PSSLCKLKSLELLSLRGCSNLQRLPDRLAS 247
           PS++ KLKSL +L L GC  L+  P+ L +
Sbjct: 761 PSTIFKLKSLGVLILSGCKKLESFPEILET 790

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460354|ref|XP_002263146.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  156 bits (395), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 107/283 (37%), Positives = 149/283 (52%), Gaps = 66/283 (23%)

Query: 22  HPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCK 81
           H +V +   ++ GTE +EG+ LDLS  KE+  +   F +M +LR L+FY+   NG     
Sbjct: 522 HDEVNHVLTTNTGTEAVEGLVLDLSASKELHFSAGAFTEMNRLRVLRFYNVKMNG----- 576

Query: 82  VSHLQDLRF--AEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNS-------- 131
                +L+F    ++ L+WH YPLKSLPSN   +KL+ L + +S +EQLW          
Sbjct: 577 -----NLKFLSNNLRSLYWHEYPLKSLPSNFHPKKLVELNMCSSRLEQLWKGDKSFEKLK 631

Query: 132 -------------------------------------------VKLVILNLSGSKSLKSL 148
                                                       KL+ LNL G K+LKS 
Sbjct: 632 FIKLSHSQYLTRTPDFSGAPNLERLILEGCTSMVKVHPSIGALQKLIFLNLEGCKNLKSF 691

Query: 149 PAGIFNLEFLTELDLSGCSKLKRLPEI--SSGNIGQLFLSGTAIEELPSSFELLLRLWLL 206
            + I ++  L  L LSGCSKLK+ PE+  +  ++ QL L  TA+ ELPSS   L  L LL
Sbjct: 692 ASSI-HMNSLQILTLSGCSKLKKFPEMLENMKSLRQLLLDETALRELPSSIGRLNGLVLL 750

Query: 207 DLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR 249
           +L++CK+L SLP SLCKL SL++L+L GCS L++LPD L S R
Sbjct: 751 NLTNCKKLVSLPQSLCKLTSLQILTLAGCSELKKLPDELGSLR 793

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496030|ref|XP_002277205.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  155 bits (393), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 108/321 (33%), Positives = 161/321 (50%), Gaps = 74/321 (23%)

Query: 4   LEYHDALELFSRHAFKQN-------------HPDVVYEELSSKGTEKIEGICLDLSKVKE 50
           L+ HD ++       +QN             H DV +    + GTE++EGI LDLS ++E
Sbjct: 612 LQMHDLIQHMGMEVVRQNSPNEPGKWSRLWSHEDVSHVVKKNTGTEEVEGIFLDLSNLQE 671

Query: 51  IPLNPNTFAKMRKLRFLKFYSSSFNGENRC-------KVSHLQDLRF--AEVKYLHWHGY 101
           I      F ++ KLR LK Y S  + +++C       KV    +L+F   +++YL+W+GY
Sbjct: 672 IHFTSEGFTRINKLRLLKVYKSHISKDSKCTFKKEECKVYFSHNLKFHSNDLRYLYWYGY 731

Query: 102 PLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLV----ILNLSGSKSLKSLPA------- 150
            LKSLP N + E+L+   +P S I+QLW  +K++     + LS S+ L  +P        
Sbjct: 732 SLKSLPDNFNPERLLEFNMPYSHIKQLWKGIKVLEKLKFMELSHSQCLVEIPDLSRASNL 791

Query: 151 ------------------GIFN-LEFLTELD--------------------LSGCSKLKR 171
                             G+ N L FL+  D                    LSGCSKL++
Sbjct: 792 ERLVLEGCIHLCAIHPSLGVLNKLIFLSLRDCINLRHFPNSIELKSLQIFILSGCSKLEK 851

Query: 172 LPEISS--GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLEL 229
            PEI     ++ +LFL G  IEELPSS E  + L +LDL++CK L+SLP+S+C L+SL+ 
Sbjct: 852 FPEIRGYMEHLSELFLDGIGIEELPSSIEYAIGLVVLDLTNCKELRSLPNSICNLESLKT 911

Query: 230 LSLRGCSNLQRLPDRLASYRR 250
           L L  CS L+ LP      ++
Sbjct: 912 LLLSDCSKLESLPQNFGKLKQ 932

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127754|ref|XP_002329169.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870950|gb|EEF08081.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  155 bits (391), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 110/305 (36%), Positives = 153/305 (50%), Gaps = 86/305 (28%)

Query: 23  PDVVYEEL-SSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYS-----SSFNG 76
           P+ VY+ L   KGTE +EGICLD+S+ +E+ L  + F++M +LR LKF++       F  
Sbjct: 515 PEDVYQALVKKKGTEAVEGICLDISESREMHLKSDAFSRMDRLRILKFFNHFSLDEIFIM 574

Query: 77  ENRCKVSHLQ----DLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV 132
           +N+ KV HL     D    E++YLHW G+PLK+LP +  AE ++ L  P+S IE+LW  V
Sbjct: 575 DNKDKV-HLPHSGLDYLSDELRYLHWDGFPLKTLPQSFCAENIVELIFPDSKIEKLWTGV 633

Query: 133 ---------------------------------------------------KLVILNLSG 141
                                                              KL +L LS 
Sbjct: 634 QDLVHLRRMDLSGSPYLLEIPDLSMAENIESINLKFCKSLIEVNPSIQYLTKLEVLQLSY 693

Query: 142 SKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-----------------------SG 178
             +L+SLP+ I + + L  LDL  C  ++  P IS                       SG
Sbjct: 694 CDNLRSLPSRIGS-KVLRILDLYHCINVRICPAISGNSPVLRKVDLQFCANITKFPEISG 752

Query: 179 NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL 238
           NI  L+L GTAIEE+PSS E L  L  L +++CK+L S+PSS+CKLKSLE+L L GCS L
Sbjct: 753 NIKYLYLQGTAIEEVPSSIEFLTALVRLYMTNCKQLSSIPSSICKLKSLEVLGLSGCSKL 812

Query: 239 QRLPD 243
           +  P+
Sbjct: 813 ENFPE 817

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  152 bits (384), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/285 (39%), Positives = 146/285 (51%), Gaps = 64/285 (22%)

Query: 26  VYEELSSK-GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGE------- 77
           VY+ L+ K GTE IEGI L+L  +KEI      FA+M+KLR LK Y+S  +G+       
Sbjct: 530 VYDVLTEKTGTENIEGIFLNLYGLKEIHYTTEAFAEMKKLRLLKVYNSHNSGDFEYASRN 589

Query: 78  NRCKVSHLQDLRFA--EVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV--- 132
              K    QD  F   +++YL+WH YPLKSLPSN   + L+ L +    +E+LW  V   
Sbjct: 590 ENYKRPFSQDFEFPSNKLRYLYWHRYPLKSLPSNFHPKNLVELNLCCCYVEELWKGVKHM 649

Query: 133 ------------------------------------------------KLVILNLSGSKS 144
                                                           KL+ LNL   K+
Sbjct: 650 EKLECIDLSHSQYLVRTPDFSGIPNLERLIFEGCTDLREVHQSLGVLSKLIFLNLKDCKN 709

Query: 145 LKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIG--QLFLSGTAIEELPSSFELLLR 202
           L+  P+ I  LE L  L LSGCSKL   PEI     G  +LFL GTAI+ELP S E L  
Sbjct: 710 LQCFPSSI-ELESLKVLILSGCSKLDNFPEILENMEGLRELFLDGTAIKELPLSVEHLNG 768

Query: 203 LWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS 247
           L LL+L +C+RL +LPSS+C LKSL  L+L GCS L++LP+ L +
Sbjct: 769 LVLLNLRNCERLITLPSSICNLKSLSTLTLSGCSQLEKLPENLGN 813

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744796|emb|CBI38064.3| unnamed protein product [Vitis vinifera]

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 109/312 (34%), Positives = 149/312 (47%), Gaps = 87/312 (27%)

Query: 24  DVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNG------- 76
           D     +   GTE +EG+ LDLS  KE+  +   F +M +LR L+FY+   NG       
Sbjct: 82  DASSSNMEGLGTEAVEGLVLDLSASKELHFSAGAFTEMNRLRVLRFYNVKMNGSLEYLSE 141

Query: 77  ------------------------ENRCKVSHLQDLRF--AEVKYLHWHGYPLKSLPSNH 110
                                   +  CK+    DL+F    ++ L+WH YPLKSLPSN 
Sbjct: 142 KELFDTTYHPWRWRAHEIQRADEMQTDCKLHLSGDLKFLSNNLRSLYWHEYPLKSLPSNF 201

Query: 111 SAEKLMFLEVPNSDIEQLWNS--------------------------------------- 131
             +KL+ L + +S +EQLW                                         
Sbjct: 202 HPKKLVELNMCSSRLEQLWKGDKSFEKLKFIKLSHSQYLTRTPDFSGAPNLERLILEGCT 261

Query: 132 ------------VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI--SS 177
                        KL+ LNL G K+LKS  + I ++  L  L LSGCSKLK+ PE+  + 
Sbjct: 262 SMVKVHPSIGALQKLIFLNLEGCKNLKSFASSI-HMNSLQILTLSGCSKLKKFPEMLENM 320

Query: 178 GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSN 237
            ++ QL L  TA+ ELPSS   L  L LL+L++CK+L SLP SLCKL SL++L+L GCS 
Sbjct: 321 KSLRQLLLDETALRELPSSIGRLNGLVLLNLTNCKKLVSLPQSLCKLTSLQILTLAGCSE 380

Query: 238 LQRLPDRLASYR 249
           L++LPD L S R
Sbjct: 381 LKKLPDELGSLR 392

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	251
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.517	0.100	0.321	3e-22
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.557	0.114	0.360	4.2e-21
TAIR|locus:2175075	1068	AT5G41750 [Arabidopsis thalian	0.549	0.129	0.319	7.6e-20
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.657	0.130	0.323	5.6e-19
TAIR|locus:2122209	1179	AT4G36150 [Arabidopsis thalian	0.669	0.142	0.342	5.9e-19
TAIR|locus:2155322	1170	LAZ5 "LAZARUS 5" [Arabidopsis	0.661	0.141	0.321	7.5e-19
TAIR|locus:2039405	1109	AT2G16870 [Arabidopsis thalian	0.633	0.143	0.303	4e-18
TAIR|locus:2160487	1085	AT5G41550 [Arabidopsis thalian	0.585	0.135	0.305	4.8e-18
TAIR|locus:2122955	1309	AT4G19500 [Arabidopsis thalian	0.569	0.109	0.364	5.8e-18
TAIR|locus:2162439	1008	AT5G22690 [Arabidopsis thalian	0.593	0.147	0.316	6.2e-18

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 3.0e-22, Sum P(2) = 3.0e-22
 Identities = 46/143 (32%), Positives = 78/143 (54%)

Query:     4 LEYHDALELFSRHAFKQ---NHP----------DVVYEELSSKGTEKIEGICLDLSKVKE 50
             ++ HD LE   R   +Q   N+P          D+ +    + GT+ +EGI L+LS++ E
Sbjct:   480 VKIHDLLEQMGRELVRQQAVNNPAQRLLLWDPEDICHLLSENSGTQLVEGISLNLSEISE 539

Query:    51 IPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH 110
             +  +   F  +  L+ L FY  SF+GE R  + +       +++YL W GYPLK++PS  
Sbjct:   540 VFASDRAFEGLSNLKLLNFYDLSFDGETRVHLPNGLSYLPRKLRYLRWDGYPLKTMPSRF 599

Query:   111 SAEKLMFLEVPNSDIEQLWNSVK 133
               E L+ L + NS++E+LW+ ++
Sbjct:   600 FPEFLVELCMSNSNLEKLWDGIQ 622

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 228 (85.3 bits), Expect = 4.2e-21, Sum P(3) = 4.2e-21
 Identities = 53/147 (36%), Positives = 81/147 (55%)

Query:    34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSS--SFNGENRCKVSHLQDLRFA 91
             GT+KI GI LD SK++ + L+   F  M  L++LK Y S  S   E   K+   + L F 
Sbjct:   537 GTDKIRGIFLDTSKLRAMRLSAKAFQGMYNLKYLKIYDSHCSRGCEAEFKLHLRRGLSFL 596

Query:    92 --EVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVK---LVIXXXXXXXXXX 146
               E+ YLHWHGYPL+S+P +   + L+ L++P+S +E++W+  K   ++           
Sbjct:   597 PNELTYLHWHGYPLQSIPLDFDPKNLVDLKLPHSQLEEIWDDEKDVGMLKWVDLSHSINL 656

Query:   147 XXPAGIFNLEFLTELDLSGCSKLKRLP 173
                 G+ N   L  L+L GC+ LK+LP
Sbjct:   657 RQCLGLANAHNLERLNLEGCTSLKKLP 683

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2175075 AT5G41750 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 7.6e-20, Sum P(3) = 7.6e-20
 Identities = 46/144 (31%), Positives = 72/144 (50%)

Query:    34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAE- 92
             GTE ++GI  D S ++E+ +    F  MR L+FL+ Y  SFN E   ++   +D+ +   
Sbjct:   525 GTESVKGISFDTSNIEEVSVGKGAFEGMRNLQFLRIYRDSFNSEGTLQIP--EDMEYIPP 582

Query:    93 VKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVIXXXXXXXXXXXXPAGI 152
             V+ LHW  YP KSLP   + E L+ + +P+S +++LW  ++ +                I
Sbjct:   583 VRLLHWQNYPRKSLPQRFNPEHLVKIRMPSSKLKKLWGGIQPLPNLKSIDMSFSYSLKEI 642

Query:   153 FNLEFLTELD---LSGCSKLKRLP 173
              NL   T L+   L  C  L  LP
Sbjct:   643 PNLSKATNLEILSLEFCKSLVELP 666

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 5.6e-19, Sum P(2) = 5.6e-19
 Identities = 56/173 (32%), Positives = 91/173 (52%)

Query:    22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCK 81
             H ++V   ++     K+ G+ LD+ +VKE+ L+ +TF KM  LR+LKFY+S  + E   +
Sbjct:   543 HSEIVDVLMNKAEATKVRGVYLDMFEVKEMGLDSDTFNKMDDLRYLKFYNSHCHRECEAE 602

Query:    82 VSHL---QDLRFA--EVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVI 136
              S L   + L F   E++YL+W  YP K+LP N   + L+ L++P S IEQ+W   K   
Sbjct:   603 DSKLNFPEGLEFLPQELRYLNWLKYPEKNLPINFDPKNLIDLKLPYSQIEQIWEEEKDTS 662

Query:   137 XXX---XXXXXXXXXPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLS 186
                             +G+   + L  ++L GC+ LK LP++       +FL+
Sbjct:   663 NLQWLDLNHSSKLHSLSGLSRAQKLQSINLEGCTGLKTLPQVLQNMESLMFLN 715

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122209 AT4G36150 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 5.9e-19, Sum P(2) = 5.9e-19
 Identities = 63/184 (34%), Positives = 95/184 (51%)

Query:     4 LEYHDALELFSRHAFKQ------NHPDVVYEELSSKGTEKIEGICLDLSKVKE-IPLNPN 56
             +E HD L  F +    Q      NH  VV    +  G   + GI LD+S++K+ +PL+ +
Sbjct:   511 VEMHDLLYTFGKELGSQGSRRLWNHKAVVGALKNRVGA--VRGIFLDMSELKKKLPLDRS 568

Query:    57 TFAKMRKLRFLKFYSSSFNGENRC--KVSHLQDLRFA--EVKYLHWHGYPLKSLPSNHSA 112
             TF KMR LR+LKFYSS  + E     K++  + L F   E++YL+W  +PL  LP + + 
Sbjct:   569 TFIKMRNLRYLKFYSSRCDRECEADSKLNFPEGLEFPLDEIRYLYWLKFPLMKLPKDFNP 628

Query:   113 EKLMFLEVPNSDIEQLWNSVK---LVIXXXXXXXXXXXXPAGIFNLEFLTELDLSGCSKL 169
             + L    +P S+IE+LW   K    +              +G+ N E L  L+L GC+ L
Sbjct:   629 KNLTDFNLPYSEIEELWEGAKDTQKLKWVDLSHSRKLCNLSGLLNAESLQRLNLEGCTSL 688

Query:   170 KRLP 173
             + LP
Sbjct:   689 EELP 692

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2155322 LAZ5 "LAZARUS 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 7.5e-19, Sum P(2) = 7.5e-19
 Identities = 56/174 (32%), Positives = 94/174 (54%)

Query:    21 NHPDVVYEELSSKGTEKIEGICLDLSKV-KEIPLNPNTFAKMRKLRFLKFYSSSFN--GE 77
             N+ D+++   +    E + GI LD+SKV +E+  + N F+ M  LR+LK YSS  +  GE
Sbjct:   581 NYQDIMWFLNNELEMENVRGIFLDMSKVPEEMTFDGNIFSNMCNLRYLKIYSSVCHKEGE 640

Query:    78 NRCKVSHLQDLRFA--EVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVK-- 133
                K   +++++    +V+YLHW  YP + LPS+ + E L+ LE+P S I+++W  VK  
Sbjct:   641 GIFKFDTVREIQLPLDKVRYLHWMKYPWEKLPSDFNPENLVDLELPYSSIKKVWEGVKDT 700

Query:   134 -LVIXXXXXXXXXXXXPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLS 186
              ++               G+ N + L  L+L GC+ L +LP+        +FL+
Sbjct:   701 PILKWANLSYSSKLTNLLGLSNAKNLERLNLEGCTSLLKLPQEMENMKSLVFLN 754

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009626 "plant-type hypersensitive response" evidence=IMP

GO:0051607 "defense response to virus" evidence=IMP

TAIR|locus:2039405 AT2G16870 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 4.0e-18, Sum P(3) = 4.0e-18
 Identities = 51/168 (30%), Positives = 80/168 (47%)

Query:    21 NHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRC 80
             N  ++ Y   + KGT  + GI  D S + E+ L+     +M  LRFL  Y +  +G N  
Sbjct:   509 NAQEICYVLENDKGTGVVSGISFDTSGISEVILSNRALRRMSNLRFLSVYKTRHDGNN-- 566

Query:    81 KVSHL-QDLRFA-EVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVIXX 138
              + H+ +D++F   ++ LHW  YP KSLP     E L+ L + +S +E+LW   +L+   
Sbjct:   567 -IMHIPEDMKFPPRLRLLHWEAYPSKSLPLGFCLENLVELNMKDSQLEKLWEGTQLLTNL 625

Query:   139 XXXXXXXXXXPA---GIFNLEFLTELDLSGCSKLKRLPEISSGNIGQL 183
                             + N   L  L+L  C  L  LP+ S GN+ +L
Sbjct:   626 KKMDLSRSVHLKELPDLSNATNLERLELCDCRALVELPK-SIGNLHKL 672

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2160487 AT5G41550 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 4.8e-18, Sum P(3) = 4.8e-18
 Identities = 47/154 (30%), Positives = 79/154 (51%)

Query:    34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAE- 92
             GT  + GI  + S + E+ ++   F  MR LRFL+ ++  F+G  +C +   +D+ +   
Sbjct:   527 GTGSVIGISYNTSNIGEVSVSKGAFEGMRNLRFLRIFNYLFSG--KCTLQIPEDMEYLPP 584

Query:    93 VKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVIXXXXXXXXXXXXPAGI 152
             ++ LHW  YP KSLP+    E+L+ L +P+S++E+LW  ++ +                I
Sbjct:   585 LRLLHWDRYPRKSLPTKFQPERLLELHMPHSNLEKLWGGIQPLPNIKSIDLSFSIRLKEI 644

Query:   153 FNLEFLTELD---LSGCSKLKRLPEISSGNIGQL 183
              NL   T L+   L+ C  L  LP  S  N+ +L
Sbjct:   645 PNLSNATNLETLNLTHCKTLVELPS-SISNLHKL 677

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2122955 AT4G19500 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 5.8e-18, Sum P(2) = 5.8e-18
 Identities = 55/151 (36%), Positives = 75/151 (49%)

Query:    24 DVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVS 83
             D+V    ++ GTE IEGI LD S +    L+P  F KM  LR LKFY S+ +G N+CK++
Sbjct:  1057 DIVDVLTNNSGTEAIEGIFLDASDLT-CELSPTVFGKMYNLRLLKFYCST-SG-NQCKLT 1113

Query:    84 --HLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVIXXXXX 141
               H  D    E+  LHW  YPL  LP   +   L+ L +P S++E+LW   K +      
Sbjct:  1114 LPHGLDTLPDELSLLHWENYPLVYLPQKFNPVNLVELNMPYSNMEKLWEGKKNLEKLKNI 1173

Query:   142 XXXXXXXPAGIFNLEF---LTELDLSGCSKL 169
                       I  L     L  +DL GC+ L
Sbjct:  1174 KLSHSRELTDILMLSEALNLEHIDLEGCTSL 1204

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2162439 AT5G22690 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.2e-18, Sum P(2) = 6.2e-18
 Identities = 50/158 (31%), Positives = 81/158 (51%)

Query:    34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQ---DLRF 90
             GT+K+ GI  D+S+++E+ ++   F +M  LRFL+FY          ++ HLQ   D  F
Sbjct:   529 GTKKVLGISFDMSEIEELHIHKRAFKRMPNLRFLRFYKKLGKQSKEARL-HLQEGFDKFF 587

Query:    91 A-EVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVIXXXXXXXXXXXXP 149
               ++K L W  YP++ +PSN  A  L+ L + +S +E+LW  V+ +              
Sbjct:   588 PPKLKLLSWDDYPMRRMPSNFHAGYLVVLRMQHSKLEKLWQGVQPLTCLREMQLWGSKKL 647

Query:   150 AGIFNLEFLTELD---LSGCSKLKRLPEISSGNIGQLF 184
               I +L   T L+   L+ CS L  LP  S  N+ +L+
Sbjct:   648 KEIPDLSLATNLETLYLNDCSSLVELPS-SIKNLNKLW 684

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	251
PLN03210	1153	PLN03210, PLN03210, Resistant to P	3e-28
PLN03210	1153	PLN03210, PLN03210, Resistant to P	2e-18
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.003
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	0.003

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score =  112 bits (282), Expect = 3e-28
 Identities = 80/222 (36%), Positives = 120/222 (54%), Gaps = 37/222 (16%)

Query: 32  SKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRF- 90
           + GT+K+ GI LD+ ++ E+ ++ N F  MR L FLKFY+  ++ +   +  HL +  F 
Sbjct: 528 NTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVR-WHLPE-GFD 585

Query: 91  ---AEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVK----LVILNLSGSK 143
               +++ L W  YPL+ +PSN   E L+ L++  S +E+LW+ V     L  ++L GSK
Sbjct: 586 YLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK 645

Query: 144 SLKSLP--AGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLL 201
           +LK +P  +   NLE    L LS CS L                      ELPSS + L 
Sbjct: 646 NLKEIPDLSMATNLE---TLKLSDCSSLV---------------------ELPSSIQYLN 681

Query: 202 RLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD 243
           +L  LD+S C+ L+ LP+ +  LKSL  L+L GCS L+  PD
Sbjct: 682 KLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD 722

syringae 6; Provisional. Length = 1153

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 84.2 bits (208), Expect = 2e-18
 Identities = 55/143 (38%), Positives = 78/143 (54%), Gaps = 13/143 (9%)

Query: 102 PLKSLPSNHSAEKLMF------LEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNL 155
           PL ++ S  S  +L        +E+P+S    + N  KL  L +    +L++LP GI NL
Sbjct: 771 PLMTMLS-PSLTRLFLSDIPSLVELPSS----IQNLHKLEHLEIENCINLETLPTGI-NL 824

Query: 156 EFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLK 215
           E L  LDLSGCS+L+  P+IS+ NI  L LS T IEE+P   E    L  LD++ C  L+
Sbjct: 825 ESLESLDLSGCSRLRTFPDIST-NISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQ 883

Query: 216 SLPSSLCKLKSLELLSLRGCSNL 238
            +  ++ KLK LE +    C  L
Sbjct: 884 RVSLNISKLKHLETVDFSDCGAL 906

syringae 6; Provisional. Length = 1153

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 6e-05
 Identities = 68/266 (25%), Positives = 102/266 (38%), Gaps = 65/266 (24%)

Query: 21  NHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFA--------KMRKLRFLKFYSS 72
           NH D+VY  L+      I     +L  ++ + L  N  +         ++KL  L    +
Sbjct: 239 NHLDLVYNNLTGP----IPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDN 294

Query: 73  SFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL--MFLEVPNSDIEQLWN 130
           S +GE    V  LQ+L       LH        L SN+   K+      +P   + QLW+
Sbjct: 295 SLSGEIPELVIQLQNLEI-----LH--------LFSNNFTGKIPVALTSLPRLQVLQLWS 341

Query: 131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPE--ISSGNIGQLFLSGT 188
           +        SG      +P  +     LT LDLS  +    +PE   SSGN+ +L L   
Sbjct: 342 N------KFSGE-----IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSN 390

Query: 189 AIE-------------------------ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCK 223
           ++E                         ELPS F  L  ++ LD+S+      + S    
Sbjct: 391 SLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450

Query: 224 LKSLELLSLRGCSNLQRLPDRLASYR 249
           + SL++LSL        LPD   S R
Sbjct: 451 MPSLQMLSLARNKFFGGLPDSFGSKR 476

Length = 968

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 41.5 bits (97), Expect = 3e-04
 Identities = 35/107 (32%), Positives = 47/107 (43%), Gaps = 4/107 (3%)

Query: 142 SKSLKSLPAGIFNLEFLTELDLSG--CSKLKRLPEISSGNIGQLFLSGTAIEELPSSFEL 199
              L+S  + +  L  LT LDL     + +  L  +   N+ +L LS   IE LPS    
Sbjct: 102 LNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRN 161

Query: 200 LLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLA 246
           L  L  LDLS    L  LP  L  L +L  L L G + +  LP  + 
Sbjct: 162 LPNLKNLDLSFND-LSDLPKLLSNLSNLNNLDLSG-NKISDLPPEIE 206

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 54/201 (26%), Positives = 88/201 (43%), Gaps = 11/201 (5%)

Query: 55  PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG---YPLKSLPS-NH 110
           PN+   +  L FL   S+   G+   ++  ++ L++  + Y +  G   Y +  L S NH
Sbjct: 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNH 240

Query: 111 SAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLK 170
               L++  +       L N   L  L L  +K    +P  IF+L+ L  LDLS  S   
Sbjct: 241 L--DLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSG 298

Query: 171 RLPEI----SSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKS 226
            +PE+     +  I  LF S     ++P +   L RL +L L   K    +P +L K  +
Sbjct: 299 EIPELVIQLQNLEILHLF-SNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357

Query: 227 LELLSLRGCSNLQRLPDRLAS 247
           L +L L   +    +P+ L S
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCS 378

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 38.3 bits (89), Expect = 0.003
 Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 9/77 (11%)

Query: 167 SKLKRLPEISSGNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLK 225
           SKL+ L  I+        LSG +I   +P S   +  L +LDLS      S+P SL +L 
Sbjct: 439 SKLRHLQSIN--------LSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLT 490

Query: 226 SLELLSLRGCSNLQRLP 242
           SL +L+L G S   R+P
Sbjct: 491 SLRILNLNGNSLSGRVP 507

Length = 623

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	251
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.87
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.86
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.78
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.76
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.73
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.65
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.62
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.62
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.61
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.61
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.56
KOG0472	565	consensus Leucine-rich repeat protein [Function un	99.56
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.51
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.48
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.44
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.42
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.37
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.37
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.31
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.24
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.2
PLN03150	623	hypothetical protein; Provisional	99.16
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.13
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.12
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.08
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
PLN03150	623	hypothetical protein; Provisional	98.98
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.86
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.83
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.81
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.77
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.55
PRK15386	426	type III secretion protein GogB; Provisional	98.54
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.52
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.47
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.38
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.33
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.28
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.28
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.26
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.22
PRK15386	426	type III secretion protein GogB; Provisional	98.2
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.09
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.08
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.06
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.03
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.93
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.89
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.79
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.65
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.6
KOG2123	388	consensus Uncharacterized conserved protein [Funct	97.5
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.4
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	97.31
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.93
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.92
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	96.77
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.6
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.56
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.1
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	95.68
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.72
KOG1947	482	consensus Leucine rich repeat proteins, some prote	93.93
smart00370	26	LRR Leucine-rich repeats, outliers.	93.31
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.31
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.86
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	92.23
KOG4341	483	consensus F-box protein containing LRR [General fu	92.1
KOG1947	482	consensus Leucine rich repeat proteins, some prote	90.77
KOG3864	221	consensus Uncharacterized conserved protein [Funct	90.54
KOG4308	478	consensus LRR-containing protein [Function unknown	90.4
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	90.34
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	90.11
KOG0473	326	consensus Leucine-rich repeat protein [Function un	89.59
KOG3864	221	consensus Uncharacterized conserved protein [Funct	89.04
KOG4341	483	consensus F-box protein containing LRR [General fu	88.64
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	86.81
KOG4308	478	consensus LRR-containing protein [Function unknown	86.51
KOG0473	326	consensus Leucine-rich repeat protein [Function un	81.19

>PLN03210 Resistant to P

Probab=99.89  E-value=8.7e-22  Score=187.37  Aligned_cols=243  Identities=34%  Similarity=0.540  Sum_probs=157.6

Q ss_pred             CchhHhHHHHHHHHhhh------------hcCCcchHHHHHhccCCCceEEEEeecCCcccccCCchhhhcCCCccEEEe
Q 025516            2 EALEYHDALELFSRHAF------------KQNHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKF   69 (251)
Q Consensus         2 ~~~~~hd~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l   69 (251)
                      +.+.|||++++||++++            .|+..++..+.....+..+++++.++.+......+.+.+|.+|++|+.|.+
T Consensus       486 ~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~  565 (1153)
T PLN03210        486 DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKF  565 (1153)
T ss_pred             CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEE
Confidence            35899999999999997            244556777788888999999999999998888888999999999999999


Q ss_pred             ecccCCCCCccccccCCccee--cceeEEeeccCCCCCCCCCCCcCCceEeecCCCccc---------------------
Q 025516           70 YSSSFNGENRCKVSHLQDLRF--AEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIE---------------------  126 (251)
Q Consensus        70 ~~n~~~~~~~~~l~~l~~l~~--l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~---------------------  126 (251)
                      ..+.+.......+..+..+..  ..|+.+.+.++.+..+|..+.+.+|+.|+++++++.                     
T Consensus       566 ~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~  645 (1153)
T PLN03210        566 YTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSK  645 (1153)
T ss_pred             ecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccccccCCCCCEEECCCCC
Confidence            766432211111111122221  135555555555555555444445555555444443                     


Q ss_pred             ------cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEE---------------
Q 025516          127 ------QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLF---------------  184 (251)
Q Consensus       127 ------~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~---------------  184 (251)
                            .+..+++|+.|++++|.....+|..++.+++|+.|++++|..++.+|... +++|+.|+               
T Consensus       646 ~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~  725 (1153)
T PLN03210        646 NLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDIST  725 (1153)
T ss_pred             CcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccC
Confidence                  23334467777777766666677777777777777777776666655432 34444444               


Q ss_pred             ------ccccCCccCCccc------------------------------ccCccCCEEeccCCcCCccCcccccCCCCCC
Q 025516          185 ------LSGTAIEELPSSF------------------------------ELLLRLWLLDLSDCKRLKSLPSSLCKLKSLE  228 (251)
Q Consensus       185 ------l~~n~i~~lp~~~------------------------------~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  228 (251)
                            +++|.+..+|..+                              ..+++|+.|++++|+....+|..++++++|+
T Consensus       726 nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~  805 (1153)
T PLN03210        726 NISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLE  805 (1153)
T ss_pred             CcCeeecCCCccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCC
Confidence                  4444444444321                              0124566777777776777787788888888


Q ss_pred             EEeccCCcCCCCCChh
Q 025516          229 LLSLRGCSNLQRLPDR  244 (251)
Q Consensus       229 ~L~l~~n~~~~~~p~~  244 (251)
                      .|++++|..++.+|..
T Consensus       806 ~L~Ls~C~~L~~LP~~  821 (1153)
T PLN03210        806 HLEIENCINLETLPTG  821 (1153)
T ss_pred             EEECCCCCCcCeeCCC
Confidence            8888888777777764

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.87  E-value=1.2e-21  Score=184.81  Aligned_cols=205  Identities=20%  Similarity=0.263  Sum_probs=110.8

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCcccc-ccCCcceecceeEEeeccCCCCCCCCCCCcCC
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKV-SHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEK  114 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~  114 (251)
                      .++..+.+..+.+.  ...+..|..+++|+.|++++|.+.+..+..+ ..+.+|+.++++.|++.+    .+|. ..+.+
T Consensus        69 ~~v~~L~L~~~~i~--~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~----~~p~-~~l~~  141 (968)
T PLN00113         69 SRVVSIDLSGKNIS--GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTG----SIPR-GSIPN  141 (968)
T ss_pred             CcEEEEEecCCCcc--ccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccc----ccCc-cccCC
Confidence            34555555544433  3347788999999999999999887666553 366777777666665543    2221 12444


Q ss_pred             ceEeecCCCccc-----cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCC----------------------
Q 025516          115 LMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCS----------------------  167 (251)
Q Consensus       115 L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~----------------------  167 (251)
                      |++|++++|.+.     .+..+++|++|++++|.+.+.+|..++++++|++|++++|.                      
T Consensus       142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  221 (968)
T PLN00113        142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY  221 (968)
T ss_pred             CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence            555555555443     13334445555555544444444444444455555554444                      


Q ss_pred             --CCCCCCccc--cCCccEEEccccCCc-cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          168 --KLKRLPEIS--SGNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       168 --~~~~~~~~~--~~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                        +.+.+|...  +++|++|++++|.++ .+|..++++++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|
T Consensus       222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p  301 (968)
T PLN00113        222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP  301 (968)
T ss_pred             CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence              444444322  445555555555544 344445555555555555555555555555555555555555555555555


Q ss_pred             hhhhh
Q 025516          243 DRLAS  247 (251)
Q Consensus       243 ~~l~~  247 (251)
                      ..+++
T Consensus       302 ~~~~~  306 (968)
T PLN00113        302 ELVIQ  306 (968)
T ss_pred             hhHcC
Confidence            54443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.86  E-value=1.7e-21  Score=183.80  Aligned_cols=190  Identities=20%  Similarity=0.251  Sum_probs=114.9

Q ss_pred             CchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccc-----c
Q 025516           54 NPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIE-----Q  127 (251)
Q Consensus        54 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~-----~  127 (251)
                      .|..++.+++|++|++++|.+.+..+..+..+.+|+.++++.|.+.+    .+|..+ .+.+|++|++++|++.     .
T Consensus       156 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~~p~~  231 (968)
T PLN00113        156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVG----QIPRELGQMKSLKWIYLGYNNLSGEIPYE  231 (968)
T ss_pred             CChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcC----cCChHHcCcCCccEEECcCCccCCcCChh
Confidence            36667777888888888777777666677777777766666665544    334333 4666666666666653     2


Q ss_pred             ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCc-cCCcccccCccCC
Q 025516          128 LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE-ELPSSFELLLRLW  204 (251)
Q Consensus       128 l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~-~lp~~~~~l~~L~  204 (251)
                      +..+++|++|++++|.+.+..|..++++++|++|++++|.+.+.+|...  +++|+.|++++|.+. .+|..+.++++|+
T Consensus       232 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  311 (968)
T PLN00113        232 IGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE  311 (968)
T ss_pred             HhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence            3455666666666666555666666666666666666666555554432  455666666666555 4455555555556


Q ss_pred             EEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhh
Q 025516          205 LLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS  247 (251)
Q Consensus       205 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~  247 (251)
                      .|++++|.+.+..|..++.+++|+.|++++|.+.+.+|..++.
T Consensus       312 ~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~  354 (968)
T PLN00113        312 ILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGK  354 (968)
T ss_pred             EEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhC
Confidence            6655555555555555555555555555555555555554443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.78  E-value=5.4e-20  Score=156.03  Aligned_cols=194  Identities=18%  Similarity=0.122  Sum_probs=119.2

Q ss_pred             cCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccc-----
Q 025516           52 PLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIE-----  126 (251)
Q Consensus        52 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~-----  126 (251)
                      .+++.+|.++++|+.|++..|.+..+..-+|..+.+++.+.|..|+++...-+   ..+++.++++|++..|++.     
T Consensus       211 tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG---~Fy~l~kme~l~L~~N~l~~vn~g  287 (873)
T KOG4194|consen  211 TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG---AFYGLEKMEHLNLETNRLQAVNEG  287 (873)
T ss_pred             ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc---ceeeecccceeecccchhhhhhcc
Confidence            33466666677777777777766666556666666666555555554432111   1124566666666666664     


Q ss_pred             cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc------------------------c--cCCc
Q 025516          127 QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI------------------------S--SGNI  180 (251)
Q Consensus       127 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~------------------------~--~~~L  180 (251)
                      ++.+++.|+.|++++|.+....++++...++|++|++++|++..--++.                        +  +++|
T Consensus       288 ~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL  367 (873)
T KOG4194|consen  288 WLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSL  367 (873)
T ss_pred             cccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhh
Confidence            2344555666666666555555555555556666666665433221111                        1  5567


Q ss_pred             cEEEccccCCcc-CC---cccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          181 GQLFLSGTAIEE-LP---SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       181 ~~L~l~~n~i~~-lp---~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      ++|+|+.|.++. +.   ..+.+++.|+.|++-+|++....-.+|.++++|+.|++.+|.+...-|..+.++
T Consensus       368 ~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m  439 (873)
T KOG4194|consen  368 HKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM  439 (873)
T ss_pred             hhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc
Confidence            777777777662 22   235678888888888888544434688889999999999988888888777655

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.76  E-value=2.6e-20  Score=159.43  Aligned_cols=223  Identities=20%  Similarity=0.300  Sum_probs=127.6

Q ss_pred             CcchHHHHHhccCCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEe----
Q 025516           22 HPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLH----   97 (251)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~----   97 (251)
                      ++....+..+....+.++++.+..+++...+++++.| .+..|+.|++|.|.+... |..+..-+++-+++|++|+    
T Consensus        64 HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF-~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetI  141 (1255)
T KOG0444|consen   64 HNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIF-RLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETI  141 (1255)
T ss_pred             hhhhHhhhhhhccchhhHHHhhhccccccCCCCchhc-ccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccC
Confidence            4455556666667777777777777777777766554 678888888888876642 2223333333344444333    


Q ss_pred             ---------------eccCCCCCCCCCC-CcCCceEeecCCCccc-----cccCcCCccEEEcCCCcCC-ccccCccccC
Q 025516           98 ---------------WHGYPLKSLPSNH-SAEKLMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSL-KSLPAGIFNL  155 (251)
Q Consensus        98 ---------------l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~-~~~~~~~~~l  155 (251)
                                     ++++.+..+|... .+.+|++|++++|.+.     .+|.+++|++|.+++.+.+ ..+|.++..+
T Consensus       142 Pn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l  221 (1255)
T KOG0444|consen  142 PNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDL  221 (1255)
T ss_pred             CchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhh
Confidence                           2333344444444 3556666666666542     4566666666666654322 2345555555


Q ss_pred             CCccEEecCCCCCCCCCCcc-------------------------ccCCccEEEccccCCccCCcccccCccCCEEeccC
Q 025516          156 EFLTELDLSGCSKLKRLPEI-------------------------SSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSD  210 (251)
Q Consensus       156 ~~L~~L~l~~n~~~~~~~~~-------------------------~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~  210 (251)
                      .+|+.+|++.|.+ ..+|+.                         ...+|++|++++|+++.+|+.+++++.|+.|.+.+
T Consensus       222 ~NL~dvDlS~N~L-p~vPecly~l~~LrrLNLS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~  300 (1255)
T KOG0444|consen  222 HNLRDVDLSENNL-PIVPECLYKLRNLRRLNLSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANN  300 (1255)
T ss_pred             hhhhhccccccCC-CcchHHHhhhhhhheeccCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhcc
Confidence            5555555555432 222221                         13456666666666666666667777777776666


Q ss_pred             CcCC-ccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          211 CKRL-KSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       211 n~~~-~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      |++. ..+|.+++++.+|+.+...+ +.++-+|++++.+
T Consensus       301 NkL~FeGiPSGIGKL~~Levf~aan-N~LElVPEglcRC  338 (1255)
T KOG0444|consen  301 NKLTFEGIPSGIGKLIQLEVFHAAN-NKLELVPEGLCRC  338 (1255)
T ss_pred             CcccccCCccchhhhhhhHHHHhhc-cccccCchhhhhh
Confidence            6654 34566666666666666655 4555666666554

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.73  E-value=4.5e-19  Score=150.56  Aligned_cols=193  Identities=21%  Similarity=0.211  Sum_probs=127.8

Q ss_pred             eEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceE
Q 025516           38 IEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMF  117 (251)
Q Consensus        38 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~  117 (251)
                      +..+.+..+.+++++  ...|.++.+|..|.++.|+++...+..|..++.|+.++|..|.+.-.....|.   ++.+|+.
T Consensus       175 i~~L~La~N~It~l~--~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFq---gL~Sl~n  249 (873)
T KOG4194|consen  175 IKKLNLASNRITTLE--TGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQ---GLPSLQN  249 (873)
T ss_pred             ceEEeeccccccccc--cccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhc---Cchhhhh
Confidence            444444444444433  55677777777777777777666556666677777777766666543211111   5777777


Q ss_pred             eecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc--ccCCccEEEccccCC
Q 025516          118 LEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI--SSGNIGQLFLSGTAI  190 (251)
Q Consensus       118 L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--~~~~L~~L~l~~n~i  190 (251)
                      +.+..|.|..     +..+.++++|+|..|++...-..++.+++.|+.|+++.|.+...-++.  +.++|++|+|+.|.|
T Consensus       250 lklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i  329 (873)
T KOG4194|consen  250 LKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRI  329 (873)
T ss_pred             hhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEecccccc
Confidence            7777777763     445669999999999977777788999999999999999877655543  388999999999999


Q ss_pred             ccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 025516          191 EELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       191 ~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n  235 (251)
                      +++++ .+..+..|+.|.|++|.+....-.+|..+.+|++|++++|
T Consensus       330 ~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N  375 (873)
T KOG4194|consen  330 TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSN  375 (873)
T ss_pred             ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCC
Confidence            98875 3455555555555555543333333444444444444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.65  E-value=3.2e-18  Score=146.81  Aligned_cols=201  Identities=21%  Similarity=0.327  Sum_probs=133.7

Q ss_pred             EEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCC-------------
Q 025516           39 EGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKS-------------  105 (251)
Q Consensus        39 ~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~-------------  105 (251)
                      -.+.++.++++++  +...|-+++.|-+|++|+|++.. .|+.+..+..|+.+.|+.|.+...++..             
T Consensus       129 iVLNLS~N~IetI--Pn~lfinLtDLLfLDLS~NrLe~-LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms  205 (1255)
T KOG0444|consen  129 IVLNLSYNNIETI--PNSLFINLTDLLFLDLSNNRLEM-LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMS  205 (1255)
T ss_pred             EEEEcccCccccC--CchHHHhhHhHhhhccccchhhh-cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcc
Confidence            3334444444433  34566677777777777776553 3444455555555666666554444333             


Q ss_pred             --------CCCCC-CcCCceEeecCCCcccccc----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCC
Q 025516          106 --------LPSNH-SAEKLMFLEVPNSDIEQLW----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRL  172 (251)
Q Consensus       106 --------~~~~~-~l~~L~~L~l~~n~i~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  172 (251)
                              +|..+ .+.+|..++++.|.++.+|    .+.+|+.|+|++|+ ...+.-..+.+.+|++|+++.|+ ++.+
T Consensus       206 ~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~-iteL~~~~~~W~~lEtLNlSrNQ-Lt~L  283 (1255)
T KOG0444|consen  206 NTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNK-ITELNMTEGEWENLETLNLSRNQ-LTVL  283 (1255)
T ss_pred             cccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCc-eeeeeccHHHHhhhhhhccccch-hccc
Confidence                    34333 3566777777777776444    45678888888876 44444445567778888888886 4556


Q ss_pred             Cccc--cCCccEEEccccCCc--cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhh
Q 025516          173 PEIS--SGNIGQLFLSGTAIE--ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLA  246 (251)
Q Consensus       173 ~~~~--~~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~  246 (251)
                      |...  ++.|+.|.+..|+++  .+|+.++++.+|+++..++|. +...|++++.|..|++|.++.|.++ .+|++|-
T Consensus       284 P~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEglcRC~kL~kL~L~~NrLi-TLPeaIH  359 (1255)
T KOG0444|consen  284 PDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGLCRCVKLQKLKLDHNRLI-TLPEAIH  359 (1255)
T ss_pred             hHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccc-cccCchhhhhhHHHHHhccccccee-echhhhh
Confidence            6544  678888888888877  688888888888888888766 5677888888888888888887666 4777654

>PLN03210 Resistant to P

Probab=99.62  E-value=8.8e-15  Score=139.86  Aligned_cols=109  Identities=37%  Similarity=0.520  Sum_probs=64.5

Q ss_pred             CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-c---------------------CCccEEEccccCC
Q 025516          133 KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-S---------------------GNIGQLFLSGTAI  190 (251)
Q Consensus       133 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~---------------------~~L~~L~l~~n~i  190 (251)
                      +|+.|++++|.....+|.+++++++|+.|++++|...+.+|... +                     .+|++|++++|.+
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i  858 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGI  858 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCccccccccccccCEeECCCCCC
Confidence            45555555555455555555555555555555554444444322 3                     4556666666666


Q ss_pred             ccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCC
Q 025516          191 EELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRL  241 (251)
Q Consensus       191 ~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~  241 (251)
                      +++|..+..+++|+.|++++|+.+..+|..+..+++|+.+++++|..+..+
T Consensus       859 ~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~  909 (1153)
T PLN03210        859 EEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA  909 (1153)
T ss_pred             ccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence            666666666667777777666666666666666667777777766655433

syringae 6; Provisional

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.62  E-value=9.8e-18  Score=122.32  Aligned_cols=135  Identities=31%  Similarity=0.401  Sum_probs=107.3

Q ss_pred             cCCceEeecCCCccc----cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCC-CCCccc--cCCccEEE
Q 025516          112 AEKLMFLEVPNSDIE----QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLK-RLPEIS--SGNIGQLF  184 (251)
Q Consensus       112 l~~L~~L~l~~n~i~----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~--~~~L~~L~  184 (251)
                      +.+|+.|++.+|+|.    .++.+++|+.|+++.|+ ....|..||.++-|+.||+++|.... .+|..+  +..|+.|+
T Consensus        55 l~nlevln~~nnqie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlraly  133 (264)
T KOG0617|consen   55 LKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALY  133 (264)
T ss_pred             hhhhhhhhcccchhhhcChhhhhchhhhheecchhh-hhcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHH
Confidence            344444444444443    35678889999998876 77788889999999999999887654 667655  78899999


Q ss_pred             ccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          185 LSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       185 l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      +++|.+.-+|..++++++|+.|.+.+|.+ -++|..++.++.|+.|.+.+| .++.+|++++.+.
T Consensus       134 l~dndfe~lp~dvg~lt~lqil~lrdndl-l~lpkeig~lt~lrelhiqgn-rl~vlppel~~l~  196 (264)
T KOG0617|consen  134 LGDNDFEILPPDVGKLTNLQILSLRDNDL-LSLPKEIGDLTRLRELHIQGN-RLTVLPPELANLD  196 (264)
T ss_pred             hcCCCcccCChhhhhhcceeEEeeccCch-hhCcHHHHHHHHHHHHhcccc-eeeecChhhhhhh
Confidence            99999999999999999999999999985 467899999999999999995 5557999888764

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.61  E-value=1.5e-17  Score=135.66  Aligned_cols=108  Identities=29%  Similarity=0.341  Sum_probs=83.7

Q ss_pred             CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEecc
Q 025516          133 KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLS  209 (251)
Q Consensus       133 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~  209 (251)
                      +|..|++++| +...+|..++.+..|++|+++.|++ ..+|...  +..++.+-.+.|+++++++. +.+|.+|+.||+.
T Consensus       436 kLt~L~L~NN-~Ln~LP~e~~~lv~Lq~LnlS~NrF-r~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~  513 (565)
T KOG0472|consen  436 KLTFLDLSNN-LLNDLPEEMGSLVRLQTLNLSFNRF-RMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQ  513 (565)
T ss_pred             cceeeecccc-hhhhcchhhhhhhhhheeccccccc-ccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccC
Confidence            7778888765 5777888888888888888888743 4444433  44555555666888887765 8899999999999


Q ss_pred             CCcCCccCcccccCCCCCCEEeccCCcCCCCCChhh
Q 025516          210 DCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRL  245 (251)
Q Consensus       210 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l  245 (251)
                      +|.+ ..+|..+++|++|++|++++|++.  .|+..
T Consensus       514 nNdl-q~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~  546 (565)
T KOG0472|consen  514 NNDL-QQIPPILGNMTNLRHLELDGNPFR--QPRHQ  546 (565)
T ss_pred             CCch-hhCChhhccccceeEEEecCCccC--CCHHH
Confidence            9884 677899999999999999999887  67654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.61  E-value=8.9e-15  Score=132.16  Aligned_cols=86  Identities=28%  Similarity=0.316  Sum_probs=59.3

Q ss_pred             CccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCc
Q 025516          157 FLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCS  236 (251)
Q Consensus       157 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~  236 (251)
                      +|+.|++++|.+. .+|.. .++|+.|++++|.++.+|..   +.+|+.|++++|++. .+|..++++++|+.|++++|+
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l-~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL-PSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             ccceEEecCCccc-CCCCc-ccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCC
Confidence            4555555555433 23322 34666777777777666643   245677888887754 678889999999999999999


Q ss_pred             CCCCCChhhhhc
Q 025516          237 NLQRLPDRLASY  248 (251)
Q Consensus       237 ~~~~~p~~l~~l  248 (251)
                      +.+..|..+..+
T Consensus       457 Ls~~~~~~L~~l  468 (788)
T PRK15387        457 LSERTLQALREI  468 (788)
T ss_pred             CCchHHHHHHHH
Confidence            998888877544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.56  E-value=1.5e-16  Score=116.19  Aligned_cols=141  Identities=27%  Similarity=0.362  Sum_probs=122.6

Q ss_pred             CCCCCCCcCCceEeecCCCcccc----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cC
Q 025516          105 SLPSNHSAEKLMFLEVPNSDIEQ----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SG  178 (251)
Q Consensus       105 ~~~~~~~l~~L~~L~l~~n~i~~----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~  178 (251)
                      .+|..+.+.+++.|.+++|++..    +..+.+|++|++++|+ .+.+|.+++.+++|+.|+++-|+ +..+|..+  ++
T Consensus        25 ~~~gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnq-ie~lp~~issl~klr~lnvgmnr-l~~lprgfgs~p  102 (264)
T KOG0617|consen   25 ELPGLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQ-IEELPTSISSLPKLRILNVGMNR-LNILPRGFGSFP  102 (264)
T ss_pred             hcccccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccch-hhhcChhhhhchhhhheecchhh-hhcCccccCCCc
Confidence            45556678899999999999974    5567899999999886 88899999999999999999986 45666655  89


Q ss_pred             CccEEEccccCCc--cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          179 NIGQLFLSGTAIE--ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       179 ~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      .|+.|++.+|.++  .+|-.|..+..|+.|.+++|.+ ..+|..++++++||.|.+..|+++ .+|.+++.+.
T Consensus       103 ~levldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt  173 (264)
T KOG0617|consen  103 ALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLT  173 (264)
T ss_pred             hhhhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchh-hCcHHHHHHH
Confidence            9999999999998  5898888999999999999995 677999999999999999998877 6999988765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=99.56  E-value=4e-17  Score=133.29  Aligned_cols=189  Identities=27%  Similarity=0.369  Sum_probs=131.0

Q ss_pred             chhhhcCCCccEEEeecccCCCCCccccccCCcce------------------ecceeEEeeccCCCCCCCCCC-CcCCc
Q 025516           55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLR------------------FAEVKYLHWHGYPLKSLPSNH-SAEKL  115 (251)
Q Consensus        55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~------------------~l~L~~~~l~~~~~~~~~~~~-~l~~L  115 (251)
                      |.+++++.+++.++.+.|.+.. .|.++.....+.                  .+++...+-.++.+.++|..+ .+..+
T Consensus        84 p~aig~l~~l~~l~vs~n~ls~-lp~~i~s~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l  162 (565)
T KOG0472|consen   84 PAAIGELEALKSLNVSHNKLSE-LPEQIGSLISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKL  162 (565)
T ss_pred             CHHHHHHHHHHHhhcccchHhh-ccHHHhhhhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHH
Confidence            4455666666666666555442 222222222222                  233334444456666666655 56777


Q ss_pred             eEeecCCCcccccc----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCC
Q 025516          116 MFLEVPNSDIEQLW----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAI  190 (251)
Q Consensus       116 ~~L~l~~n~i~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i  190 (251)
                      ..+++.+|.+..++    .+..|+.||...| ..+.+|..++++.+|+-|++..|.+ ..+|+.. +..|.+|+++.|+|
T Consensus       163 ~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N-~L~tlP~~lg~l~~L~~LyL~~Nki-~~lPef~gcs~L~Elh~g~N~i  240 (565)
T KOG0472|consen  163 SKLDLEGNKLKALPENHIAMKRLKHLDCNSN-LLETLPPELGGLESLELLYLRRNKI-RFLPEFPGCSLLKELHVGENQI  240 (565)
T ss_pred             HHhhccccchhhCCHHHHHHHHHHhcccchh-hhhcCChhhcchhhhHHHHhhhccc-ccCCCCCccHHHHHHHhcccHH
Confidence            77777777776543    3668999998887 4888999999999999999999864 5556544 77788888888888


Q ss_pred             ccCCcccc-cCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          191 EELPSSFE-LLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       191 ~~lp~~~~-~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      ..+|++.+ +++++..||+.+|+ .++.|..+..+.+|.+||+++|.+. .+|..++.+
T Consensus       241 ~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl  297 (565)
T KOG0472|consen  241 EMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL  297 (565)
T ss_pred             HhhHHHHhcccccceeeeccccc-cccCchHHHHhhhhhhhcccCCccc-cCCcccccc
Confidence            88887765 78888888888888 4677888888888888888886544 688877765

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.51  E-value=1.6e-13  Score=124.49  Aligned_cols=139  Identities=23%  Similarity=0.270  Sum_probs=64.3

Q ss_pred             EEeeccCCCCCCCCCCCcCCceEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCC
Q 025516           95 YLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRL  172 (251)
Q Consensus        95 ~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~  172 (251)
                      .+++++|.+..+|..+ ..+|+.|++++|++..++.  ..+|+.|++++|.+. .+|..+.  .+|+.|++++|.+. .+
T Consensus       245 ~L~Ls~N~L~~LP~~l-~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt-~LP~~lp--~sL~~L~Ls~N~Lt-~L  319 (754)
T PRK15370        245 EMELSINRITELPERL-PSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIR-TLPAHLP--SGITHLNVQSNSLT-AL  319 (754)
T ss_pred             EEECcCCccCcCChhH-hCCCCEEECcCCccCccccccCCCCcEEECCCCccc-cCcccch--hhHHHHHhcCCccc-cC
Confidence            3333444444444322 2356666666666654442  125666666666533 3333221  23444444444332 23


Q ss_pred             CccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChh
Q 025516          173 PEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR  244 (251)
Q Consensus       173 ~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~  244 (251)
                      |....++|+.|++++|.++.+|..+.  ++|+.|++++|++. .+|..+.  ++|++|++++|++. .+|..
T Consensus       320 P~~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~  385 (754)
T PRK15370        320 PETLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPEN  385 (754)
T ss_pred             CccccccceeccccCCccccCChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHh
Confidence            33233455555555555555554332  45555555555543 3443331  35555555554433 34443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.48  E-value=1.1e-13  Score=125.56  Aligned_cols=190  Identities=22%  Similarity=0.301  Sum_probs=107.4

Q ss_pred             ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceec----------------ceeEEeecc
Q 025516           37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFA----------------EVKYLHWHG  100 (251)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l----------------~L~~~~l~~  100 (251)
                      .+..+.+..+.+..+   |..+  ..+|+.|++++|.+.... ..+  +..++.+                .|+.+++++
T Consensus       200 ~L~~L~Ls~N~LtsL---P~~l--~~nL~~L~Ls~N~LtsLP-~~l--~~~L~~L~Ls~N~L~~LP~~l~s~L~~L~Ls~  271 (754)
T PRK15370        200 QITTLILDNNELKSL---PENL--QGNIKTLYANSNQLTSIP-ATL--PDTIQEMELSINRITELPERLPSALQSLDLFH  271 (754)
T ss_pred             CCcEEEecCCCCCcC---Chhh--ccCCCEEECCCCccccCC-hhh--hccccEEECcCCccCcCChhHhCCCCEEECcC
Confidence            345555555554433   2222  246777777777766422 111  1111111                355556666


Q ss_pred             CCCCCCCCCCCcCCceEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccC
Q 025516          101 YPLKSLPSNHSAEKLMFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSG  178 (251)
Q Consensus       101 ~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  178 (251)
                      +.+..+|..+ ..+|+.|++++|+++.++.  ..+|+.|++++|.+. .+|..+  .++|++|++++|.+.+ +|...++
T Consensus       272 N~L~~LP~~l-~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt-~LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~~  346 (754)
T PRK15370        272 NKISCLPENL-PEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLT-ALPETL--PPGLKTLEAGENALTS-LPASLPP  346 (754)
T ss_pred             CccCcccccc-CCCCcEEECCCCccccCcccchhhHHHHHhcCCccc-cCCccc--cccceeccccCCcccc-CChhhcC
Confidence            6666676544 3578888998888877654  235777777777643 345433  2466777777765433 4544456


Q ss_pred             CccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhh
Q 025516          179 NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRL  245 (251)
Q Consensus       179 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l  245 (251)
                      +|+.|++++|+++.+|..+.  ++|+.|++++|++. .+|..+.  .+|+.|++++|++. .+|..+
T Consensus       347 sL~~L~Ls~N~L~~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl  407 (754)
T PRK15370        347 ELQVLDVSKNQITVLPETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESL  407 (754)
T ss_pred             cccEEECCCCCCCcCChhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhH
Confidence            67777777777666665442  46667777766644 3444332  24666666665443 455544

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.44  E-value=9.2e-15  Score=130.19  Aligned_cols=120  Identities=30%  Similarity=0.352  Sum_probs=82.8

Q ss_pred             ceEeecCCCccc-----cccCcCCccEEEcCCCcCCccccCc-cccCCCccEEecCCCCCCCCCCccc--cCCccEEEcc
Q 025516          115 LMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSLPAG-IFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLS  186 (251)
Q Consensus       115 L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~  186 (251)
                      |+.|.+.+|.++     -+.++.+|++|+|++|+ ++.+|.+ +.++..|++|++++|++ +.+|...  +..|+.|...
T Consensus       361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNr-L~~fpas~~~kle~LeeL~LSGNkL-~~Lp~tva~~~~L~tL~ah  438 (1081)
T KOG0618|consen  361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNR-LNSFPASKLRKLEELEELNLSGNKL-TTLPDTVANLGRLHTLRAH  438 (1081)
T ss_pred             HHHHHHhcCcccccchhhhccccceeeeeecccc-cccCCHHHHhchHHhHHHhcccchh-hhhhHHHHhhhhhHHHhhc
Confidence            444455555443     24455688888888886 5555543 55778888888888864 4455433  6778888888


Q ss_pred             ccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcC
Q 025516          187 GTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSN  237 (251)
Q Consensus       187 ~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~  237 (251)
                      +|++..+| ++..++.|+.+|++.|.+....-......++|++||+++|..
T Consensus       439 sN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  439 SNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             CCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            88888888 677888999999998887643322222337899999998864

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.42  E-value=1.7e-14  Score=119.80  Aligned_cols=207  Identities=20%  Similarity=0.152  Sum_probs=134.8

Q ss_pred             CCCceEEEEeecCCccc----ccCCchhhhcCCCccEEEeecccCCCCCccccccCCc---ceecceeEEeeccCCCCCC
Q 025516           34 GTEKIEGICLDLSKVKE----IPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQD---LRFAEVKYLHWHGYPLKSL  106 (251)
Q Consensus        34 ~~~~~~~~~l~~~~~~~----~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~---l~~l~L~~~~l~~~~~~~~  106 (251)
                      ....++.+.+.......    ....+..+..+++|+.|++++|.+....+..+..+..   ++.++++.+.+++.....+
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l  128 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL  128 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence            34446666665544331    1122456778899999999999887655444444443   5566666665543222222


Q ss_pred             CCCC-Cc-CCceEeecCCCccc---------cccCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCC
Q 025516          107 PSNH-SA-EKLMFLEVPNSDIE---------QLWNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKR  171 (251)
Q Consensus       107 ~~~~-~l-~~L~~L~l~~n~i~---------~l~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~  171 (251)
                      .... .+ .+|+.+++++|.+.         .+..+.+|++|++++|.+.+.    ++..+...++|++|++++|.+...
T Consensus       129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence            2222 34 78999999999876         244556899999999886642    333445567899999999976532


Q ss_pred             C----Ccc--ccCCccEEEccccCCcc--CCcccc----cCccCCEEeccCCcCC----ccCcccccCCCCCCEEeccCC
Q 025516          172 L----PEI--SSGNIGQLFLSGTAIEE--LPSSFE----LLLRLWLLDLSDCKRL----KSLPSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       172 ~----~~~--~~~~L~~L~l~~n~i~~--lp~~~~----~l~~L~~L~l~~n~~~----~~~p~~~~~l~~L~~L~l~~n  235 (251)
                      -    +..  .+++|++|++++|.++.  +.....    ..+.|+.|++++|.+.    ..++..+..+++|+++++++|
T Consensus       209 ~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         209 GASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             HHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence            1    111  16789999999998873  111112    2478999999999876    234455677789999999998


Q ss_pred             cCCCC
Q 025516          236 SNLQR  240 (251)
Q Consensus       236 ~~~~~  240 (251)
                      .+...
T Consensus       289 ~l~~~  293 (319)
T cd00116         289 KFGEE  293 (319)
T ss_pred             CCcHH
Confidence            77754

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.37  E-value=2.3e-14  Score=116.94  Aligned_cols=194  Identities=21%  Similarity=0.187  Sum_probs=129.1

Q ss_pred             eEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcce-ecceeEEeeccCCCCCCCCCC--CcCC
Q 025516           38 IEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLR-FAEVKYLHWHGYPLKSLPSNH--SAEK  114 (251)
Q Consensus        38 ~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~-~l~L~~~~l~~~~~~~~~~~~--~l~~  114 (251)
                      ...+.++-+.+.  .+++.+|+.+++|+.|+++.|.++.+.+.+|..+.++. .+...+|+|.+     +|+..  ++..
T Consensus        69 tveirLdqN~I~--~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~-----l~k~~F~gL~s  141 (498)
T KOG4237|consen   69 TVEIRLDQNQIS--SIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITD-----LPKGAFGGLSS  141 (498)
T ss_pred             ceEEEeccCCcc--cCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhh-----hhhhHhhhHHH
Confidence            344555555554  55589999999999999999999998888888887766 44445565543     22211  2323


Q ss_pred             ceE------------------------eecCCCccccccCcC--------------------------------------
Q 025516          115 LMF------------------------LEVPNSDIEQLWNSV--------------------------------------  132 (251)
Q Consensus       115 L~~------------------------L~l~~n~i~~l~~~~--------------------------------------  132 (251)
                      ++.                        |.+..|.+..++...                                      
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            332                        333333322111100                                      


Q ss_pred             -------------------------CccEE---EcCCCcCCcccc-CccccCCCccEEecCCCCCCCCCCccc--cCCcc
Q 025516          133 -------------------------KLVIL---NLSGSKSLKSLP-AGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIG  181 (251)
Q Consensus       133 -------------------------~L~~L---~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~  181 (251)
                                               .++.+   -.+.|......| ..|.++++|+.|++++|.+...-+..+  ...++
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~  301 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQ  301 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhh
Confidence                                     11111   011122222223 235678899999999998777666655  67899


Q ss_pred             EEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC
Q 025516          182 QLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL  238 (251)
Q Consensus       182 ~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~  238 (251)
                      +|.|..|++..+.. .|.++..|+.|+|.+|+++...|.+|..+.+|.+|.+-.|+..
T Consensus       302 eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  302 ELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             hhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            99999999887665 5678999999999999998888999999999999999887664

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.37  E-value=1.8e-12  Score=117.44  Aligned_cols=83  Identities=25%  Similarity=0.215  Sum_probs=67.2

Q ss_pred             CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCc
Q 025516          133 KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCK  212 (251)
Q Consensus       133 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~  212 (251)
                      +|+.|++++|.+. .+|..   .++|+.|++++|.+. .+|.. +.+|+.|++++|+++.+|..++++++|+.|++++|+
T Consensus       383 ~L~~LdLs~N~Lt-~LP~l---~s~L~~LdLS~N~Ls-sIP~l-~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~  456 (788)
T PRK15387        383 GLKELIVSGNRLT-SLPVL---PSELKELMVSGNRLT-SLPML-PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNP  456 (788)
T ss_pred             ccceEEecCCccc-CCCCc---ccCCCEEEccCCcCC-CCCcc-hhhhhhhhhccCcccccChHHhhccCCCeEECCCCC
Confidence            5777888777644 45542   357999999999865 46653 468999999999999999999999999999999999


Q ss_pred             CCccCcccc
Q 025516          213 RLKSLPSSL  221 (251)
Q Consensus       213 ~~~~~p~~~  221 (251)
                      +.+..|..+
T Consensus       457 Ls~~~~~~L  465 (788)
T PRK15387        457 LSERTLQAL  465 (788)
T ss_pred             CCchHHHHH
Confidence            988777665

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.31  E-value=2.9e-13  Score=112.48  Aligned_cols=201  Identities=19%  Similarity=0.152  Sum_probs=138.0

Q ss_pred             CCCceEEEEeecCCcccccCCchhhhcCCC---ccEEEeecccCCCCCcc----ccccC-CcceecceeEEeeccCCCCC
Q 025516           34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRK---LRFLKFYSSSFNGENRC----KVSHL-QDLRFAEVKYLHWHGYPLKS  105 (251)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~---L~~L~l~~n~~~~~~~~----~l~~l-~~l~~l~L~~~~l~~~~~~~  105 (251)
                      ...+++.+.+..+....  ..+..+..+..   |+.|++++|.+.+....    .+..+ ..++.+++++|.+++.....
T Consensus        79 ~~~~L~~L~l~~~~~~~--~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~  156 (319)
T cd00116          79 KGCGLQELDLSDNALGP--DGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEA  156 (319)
T ss_pred             hcCceeEEEccCCCCCh--hHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHH
Confidence            36678888776665542  22455655655   99999999988742222    22333 55666666666665422223


Q ss_pred             CCCCC-CcCCceEeecCCCcccc---------ccCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCC
Q 025516          106 LPSNH-SAEKLMFLEVPNSDIEQ---------LWNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKR  171 (251)
Q Consensus       106 ~~~~~-~l~~L~~L~l~~n~i~~---------l~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~  171 (251)
                      ++..+ .+.+|++|++++|.+.+         +...++|++|++++|.+.+.    ++..+..+++|++|++++|.+...
T Consensus       157 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~  236 (319)
T cd00116         157 LAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA  236 (319)
T ss_pred             HHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence            33333 46789999999998862         34456899999999976533    334456788999999999986541


Q ss_pred             CC----cc---ccCCccEEEccccCCc-----cCCcccccCccCCEEeccCCcCCcc----CcccccCC-CCCCEEeccC
Q 025516          172 LP----EI---SSGNIGQLFLSGTAIE-----ELPSSFELLLRLWLLDLSDCKRLKS----LPSSLCKL-KSLELLSLRG  234 (251)
Q Consensus       172 ~~----~~---~~~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~l-~~L~~L~l~~  234 (251)
                      ..    ..   ..+.|++|++++|.++     .++..+..+++|+.+++++|.+...    ....+... +.|+.+++.+
T Consensus       237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~  316 (319)
T cd00116         237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD  316 (319)
T ss_pred             HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence            11    11   1379999999999986     3445566778999999999998754    44555555 7899999988


Q ss_pred             Cc
Q 025516          235 CS  236 (251)
Q Consensus       235 n~  236 (251)
                      |+
T Consensus       317 ~~  318 (319)
T cd00116         317 DS  318 (319)
T ss_pred             CC
Confidence            75

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.31  E-value=2.1e-12  Score=97.02  Aligned_cols=130  Identities=25%  Similarity=0.294  Sum_probs=45.1

Q ss_pred             CCCCCCCCCCcCCceEeecCCCccccc---c-CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc--
Q 025516          102 PLKSLPSNHSAEKLMFLEVPNSDIEQL---W-NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI--  175 (251)
Q Consensus       102 ~~~~~~~~~~l~~L~~L~l~~n~i~~l---~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~--  175 (251)
                      .+...+...+...+++|++.+|+|+.+   + .+.+|+.|++++|. ...+. .+..++.|++|++++|++....+..  
T Consensus         8 ~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~-I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~   85 (175)
T PF14580_consen    8 MIEQIAQYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQ-ITKLE-GLPGLPRLKTLDLSNNRISSISEGLDK   85 (175)
T ss_dssp             ----------------------------S--TT-TT--EEE-TTS---S--T-T----TT--EEE--SS---S-CHHHHH
T ss_pred             ccccccccccccccccccccccccccccchhhhhcCCCEEECCCCC-Ccccc-CccChhhhhhcccCCCCCCccccchHH
Confidence            344555555666777788888877644   3 34578888888876 33443 3666788888888888765543322  


Q ss_pred             ccCCccEEEccccCCccCCc--ccccCccCCEEeccCCcCCccC---cccccCCCCCCEEecc
Q 025516          176 SSGNIGQLFLSGTAIEELPS--SFELLLRLWLLDLSDCKRLKSL---PSSLCKLKSLELLSLR  233 (251)
Q Consensus       176 ~~~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~n~~~~~~---p~~~~~l~~L~~L~l~  233 (251)
                      .+++|++|++++|+|.++.+  .+..+++|+.|++.+|++...-   ...+..+|+|+.||-.
T Consensus        86 ~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   86 NLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             H-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred             hCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCE
Confidence            26788888888888875543  4667888888888888876431   1245778888888654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.24  E-value=9.5e-13  Score=117.63  Aligned_cols=198  Identities=24%  Similarity=0.245  Sum_probs=137.0

Q ss_pred             HhccCCCceEEEEeecCCcccccCCchhhhcCCC-ccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC
Q 025516           30 LSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRK-LRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS  108 (251)
Q Consensus        30 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~-L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~  108 (251)
                      ....+...++.+.+..+++....  ...|..... ++.|..+.|.+.......-.....++.+++-.|.+.+.   .+|.
T Consensus       304 ~~le~~~sL~tLdL~~N~L~~lp--~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~---c~p~  378 (1081)
T KOG0618|consen  304 PFLEGLKSLRTLDLQSNNLPSLP--DNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDS---CFPV  378 (1081)
T ss_pred             Ccccccceeeeeeehhccccccc--hHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccccc---chhh
Confidence            33344555666666555554432  334443333 55555555554432211112344566777777877773   4666


Q ss_pred             CCCcCCceEeecCCCcccccc-----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccE
Q 025516          109 NHSAEKLMFLEVPNSDIEQLW-----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQ  182 (251)
Q Consensus       109 ~~~l~~L~~L~l~~n~i~~l~-----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~  182 (251)
                      ..+..+|+.|++++|++..++     ++..|+.|++++|+ +..+|..+..+..|++|-..+|.+ ..+|+.. ++.|+.
T Consensus       379 l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~tL~ahsN~l-~~fPe~~~l~qL~~  456 (1081)
T KOG0618|consen  379 LVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK-LTTLPDTVANLGRLHTLRAHSNQL-LSFPELAQLPQLKV  456 (1081)
T ss_pred             hccccceeeeeecccccccCCHHHHhchHHhHHHhcccch-hhhhhHHHHhhhhhHHHhhcCCce-eechhhhhcCcceE
Confidence            668999999999999998655     56689999999997 788999999999999999999875 4555544 899999


Q ss_pred             EEccccCCcc--CCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 025516          183 LFLSGTAIEE--LPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       183 L~l~~n~i~~--lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n  235 (251)
                      +|+++|+++.  +|....+ ++|++||+++|..+..--+.+..+.++...++.-+
T Consensus       457 lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  457 LDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             EecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            9999999984  4544433 89999999999864443455666777777776654

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=5.5e-12  Score=104.40  Aligned_cols=212  Identities=17%  Similarity=0.129  Sum_probs=145.2

Q ss_pred             chHHHHHhccCCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCcc--ccccCCcceecceeEEeeccC
Q 025516           24 DVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRC--KVSHLQDLRFAEVKYLHWHGY  101 (251)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~l~~l~~l~~l~L~~~~l~~~  101 (251)
                      .+.....+.+..++++.+.++-...+..... .....|++++.|+++.|-|....+.  -...+++|+.|+|+.|.+...
T Consensus       109 GfDki~akQsn~kkL~~IsLdn~~V~~~~~~-~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~  187 (505)
T KOG3207|consen  109 GFDKIAAKQSNLKKLREISLDNYRVEDAGIE-EYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNF  187 (505)
T ss_pred             cHHHHHHHhhhHHhhhheeecCccccccchh-hhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCC
Confidence            3455555566778888888888776655432 4667899999999999987643221  124577888888888887652


Q ss_pred             CCCCCCCCCCcCCceEeecCCCcccc------ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCC--C
Q 025516          102 PLKSLPSNHSAEKLMFLEVPNSDIEQ------LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRL--P  173 (251)
Q Consensus       102 ~~~~~~~~~~l~~L~~L~l~~n~i~~------l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~  173 (251)
                      .-+..  ...+++|+.|.++.|++++      +-.+++|+.|++.+|.....-......++.|++||+++|.+...-  +
T Consensus       188 ~~s~~--~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~  265 (505)
T KOG3207|consen  188 ISSNT--TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGY  265 (505)
T ss_pred             ccccc--hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccccccccc
Confidence            11111  1147889999999999973      345778999999988533322222334788999999999766532  2


Q ss_pred             cc-ccCCccEEEccccCCcc--CCcc-----cccCccCCEEeccCCcCCccCc--ccccCCCCCCEEeccCCcCCC
Q 025516          174 EI-SSGNIGQLFLSGTAIEE--LPSS-----FELLLRLWLLDLSDCKRLKSLP--SSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       174 ~~-~~~~L~~L~l~~n~i~~--lp~~-----~~~l~~L~~L~l~~n~~~~~~p--~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      .. .++.|..|+++.|.+.+  +|+.     ...+++|+.|++..|++. .++  ..+..+++|..|.+..|.+..
T Consensus       266 ~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~-~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  266 KVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIR-DWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccc-cccccchhhccchhhhhhcccccccc
Confidence            22 28899999999998884  3432     346788999999999863 232  456777788888777765543

>PLN03150 hypothetical protein; Provisional

Probab=99.16  E-value=1.1e-10  Score=105.28  Aligned_cols=109  Identities=22%  Similarity=0.254  Sum_probs=87.6

Q ss_pred             ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCc-cCCcccccCccCCEEeccC
Q 025516          134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSD  210 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~  210 (251)
                      ++.|+|++|.+.+.+|..++.+++|+.|++++|.+.+.+|...  ++.|+.|++++|+++ .+|..++++++|+.|++++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            6778888888778888888888888888888888887777544  788888888888887 6788888888888888888


Q ss_pred             CcCCccCcccccCC-CCCCEEeccCCcCCCCCC
Q 025516          211 CKRLKSLPSSLCKL-KSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       211 n~~~~~~p~~~~~l-~~L~~L~l~~n~~~~~~p  242 (251)
                      |.+.+.+|..++.+ .++..+++.+|..+...|
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p  532 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNAGLCGIP  532 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCccccCCC
Confidence            88888888877654 467778888877766655

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.13  E-value=2.7e-11  Score=111.83  Aligned_cols=158  Identities=23%  Similarity=0.279  Sum_probs=98.8

Q ss_pred             CchhHhHHHHHHHHhhhhc----CCcchHHH------HHhccCCCceEEEEeecCCcccccCCchhhhcCCCccEEEeec
Q 025516            2 EALEYHDALELFSRHAFKQ----NHPDVVYE------ELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYS   71 (251)
Q Consensus         2 ~~~~~hd~~~~~~~~~~~~----~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~   71 (251)
                      +.|+|||+++++|.+++..    .+......      ..+......++.+++-.++...+...+    +.++|+.|.+.+
T Consensus       479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~----~~~~L~tLll~~  554 (889)
T KOG4658|consen  479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSS----ENPKLRTLLLQR  554 (889)
T ss_pred             eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhhccCCC----CCCccceEEEee
Confidence            5799999999999999831    11111111      223334455666766666554443222    345788888887


Q ss_pred             cc--CCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccccc----cCcCCccEEEcCCCcC
Q 025516           72 SS--FNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQL----WNSVKLVILNLSGSKS  144 (251)
Q Consensus        72 n~--~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~l----~~~~~L~~L~l~~n~~  144 (251)
                      |.  +.......|..++.|.+++|+.    +.....+|... .+.+|++|+++++.++.+    .++.+|.+|++.++..
T Consensus       555 n~~~l~~is~~ff~~m~~LrVLDLs~----~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~  630 (889)
T KOG4658|consen  555 NSDWLLEISGEFFRSLPLLRVLDLSG----NSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGR  630 (889)
T ss_pred             cchhhhhcCHHHHhhCcceEEEECCC----CCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccc
Confidence            75  2222222344555555555544    23345788777 488888888888888754    4566888888887766


Q ss_pred             CccccCccccCCCccEEecCCCC
Q 025516          145 LKSLPAGIFNLEFLTELDLSGCS  167 (251)
Q Consensus       145 ~~~~~~~~~~l~~L~~L~l~~n~  167 (251)
                      ...+|.....+++|++|.+....
T Consensus       631 l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  631 LESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccccchhhhcccccEEEeeccc
Confidence            66666656668888888886543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.13  E-value=1.4e-12  Score=111.10  Aligned_cols=172  Identities=22%  Similarity=0.268  Sum_probs=99.5

Q ss_pred             hhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc----ccCc
Q 025516           56 NTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ----LWNS  131 (251)
Q Consensus        56 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~----l~~~  131 (251)
                      ..++.+..|..+.+..|.+.. .+..+..+..+.+++++.|+++     .+|...+.--|+.|-+++|++..    ++..
T Consensus        92 ~~~~~f~~Le~liLy~n~~r~-ip~~i~~L~~lt~l~ls~NqlS-----~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~  165 (722)
T KOG0532|consen   92 EEACAFVSLESLILYHNCIRT-IPEAICNLEALTFLDLSSNQLS-----HLPDGLCDLPLKVLIVSNNKLTSLPEEIGLL  165 (722)
T ss_pred             hHHHHHHHHHHHHHHhcccee-cchhhhhhhHHHHhhhccchhh-----cCChhhhcCcceeEEEecCccccCCcccccc
Confidence            344444445555554444332 2333344444444444444433     35554455556666666666643    3334


Q ss_pred             CCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCC
Q 025516          132 VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDC  211 (251)
Q Consensus       132 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n  211 (251)
                      .+|..||.+.|+ ...+|..++++.+|+.|.+..|......++...-.|..||+++|+++.+|-.|++|+.|++|.|.+|
T Consensus       166 ~tl~~ld~s~ne-i~slpsql~~l~slr~l~vrRn~l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenN  244 (722)
T KOG0532|consen  166 PTLAHLDVSKNE-IQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENN  244 (722)
T ss_pred             hhHHHhhhhhhh-hhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccC
Confidence            456666666665 5556666666777777777766655544444455677777777777777777777777777777777


Q ss_pred             cCCccCcccc---cCCCCCCEEeccCC
Q 025516          212 KRLKSLPSSL---CKLKSLELLSLRGC  235 (251)
Q Consensus       212 ~~~~~~p~~~---~~l~~L~~L~l~~n  235 (251)
                      +++ +.|..+   |...-.++|+...|
T Consensus       245 PLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  245 PLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             CCC-CChHHHHhccceeeeeeecchhc
Confidence            743 334433   34445566666666

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.12  E-value=1.7e-12  Score=110.68  Aligned_cols=192  Identities=23%  Similarity=0.314  Sum_probs=144.5

Q ss_pred             eecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecC
Q 025516           43 LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVP  121 (251)
Q Consensus        43 l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~  121 (251)
                      +.......+...... ..+..-...+++.|++... +..+..+..++.+.|..|.     +..+|... ++..|++++++
T Consensus        57 Ls~rrlk~fpr~a~~-~~ltdt~~aDlsrNR~~el-p~~~~~f~~Le~liLy~n~-----~r~ip~~i~~L~~lt~l~ls  129 (722)
T KOG0532|consen   57 LSGRRLKEFPRGAAS-YDLTDTVFADLSRNRFSEL-PEEACAFVSLESLILYHNC-----IRTIPEAICNLEALTFLDLS  129 (722)
T ss_pred             cccchhhcCCCcccc-ccccchhhhhccccccccC-chHHHHHHHHHHHHHHhcc-----ceecchhhhhhhHHHHhhhc
Confidence            444444555443333 4667778889999988753 2333334444444444444     44577665 68999999999


Q ss_pred             CCccccccCc---CCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCccc
Q 025516          122 NSDIEQLWNS---VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSF  197 (251)
Q Consensus       122 ~n~i~~l~~~---~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~  197 (251)
                      .|+++.++..   --|++|-+++|+ .+.+|..++.+.+|..||.+.|.+.+-.++.. +.+|+.|++..|++..+|+++
T Consensus       130 ~NqlS~lp~~lC~lpLkvli~sNNk-l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El  208 (722)
T KOG0532|consen  130 SNQLSHLPDGLCDLPLKVLIVSNNK-LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEEL  208 (722)
T ss_pred             cchhhcCChhhhcCcceeEEEecCc-cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHH
Confidence            9999876542   249999999876 88899999988999999999998766666555 889999999999999999998


Q ss_pred             ccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhh
Q 025516          198 ELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRL  245 (251)
Q Consensus       198 ~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l  245 (251)
                      +.+ .|..||++.|+ ...+|..|.+|..|++|-+.+|++.. =|..+
T Consensus       209 ~~L-pLi~lDfScNk-is~iPv~fr~m~~Lq~l~LenNPLqS-PPAqI  253 (722)
T KOG0532|consen  209 CSL-PLIRLDFSCNK-ISYLPVDFRKMRHLQVLQLENNPLQS-PPAQI  253 (722)
T ss_pred             hCC-ceeeeecccCc-eeecchhhhhhhhheeeeeccCCCCC-ChHHH
Confidence            855 59999999988 56789999999999999999987653 34443

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.08  E-value=2.5e-11  Score=99.51  Aligned_cols=178  Identities=21%  Similarity=0.202  Sum_probs=128.3

Q ss_pred             cCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccc---
Q 025516           52 PLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQL---  128 (251)
Q Consensus        52 ~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l---  128 (251)
                      ..+...|+++++|+.|++++|.++.+...+|.....++.+.|..|.+....-+-+.   ++..|+.|++.+|+|+.+   
T Consensus       264 ~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~---~ls~L~tL~L~~N~it~~~~~  340 (498)
T KOG4237|consen  264 ICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQ---GLSGLKTLSLYDNQITTVAPG  340 (498)
T ss_pred             cChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhh---ccccceeeeecCCeeEEEecc
Confidence            33466899999999999999999999999999999999888888877652211111   689999999999999843   


Q ss_pred             --cCcCCccEEEcCCCcCC-----ccccCcc-----------ccCCCccEEecCCC------------------------
Q 025516          129 --WNSVKLVILNLSGSKSL-----KSLPAGI-----------FNLEFLTELDLSGC------------------------  166 (251)
Q Consensus       129 --~~~~~L~~L~l~~n~~~-----~~~~~~~-----------~~l~~L~~L~l~~n------------------------  166 (251)
                        ..+.+|..|++-.|.+.     ..+.+|+           .+...++.++++..                        
T Consensus       341 aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~  420 (498)
T KOG4237|consen  341 AFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPP  420 (498)
T ss_pred             cccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCC
Confidence              34557777877554422     1111111           11223555555432                        


Q ss_pred             ------------CCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccC
Q 025516          167 ------------SKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG  234 (251)
Q Consensus       167 ------------~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  234 (251)
                                  ..++.+|......-++|++.+|.++.+|..  .+.+| .+|+++|++...-...|.++++|.+|.++.
T Consensus       421 c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsy  497 (498)
T KOG4237|consen  421 CTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAITSVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSY  497 (498)
T ss_pred             cchhhhhHhhcccchhhcCCCCCchhHHHhcccchhcccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEec
Confidence                        122334444455789999999999999987  67788 899999998766667889999999999887


Q ss_pred             C
Q 025516          235 C  235 (251)
Q Consensus       235 n  235 (251)
                      |
T Consensus       498 n  498 (498)
T KOG4237|consen  498 N  498 (498)
T ss_pred             C
Confidence            4

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.06  E-value=2.7e-10  Score=97.63  Aligned_cols=181  Identities=31%  Similarity=0.351  Sum_probs=129.3

Q ss_pred             hhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-CCcCCceEeecCCCccccccC----
Q 025516           56 NTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-HSAEKLMFLEVPNSDIEQLWN----  130 (251)
Q Consensus        56 ~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~~l~~L~~L~l~~n~i~~l~~----  130 (251)
                      ..+..++.++.|++.+|.+....+ ......    -.|+.+++.++.+..+|.. ..+++|+.|++++|++.+++.    
T Consensus       110 ~~~~~~~~l~~L~l~~n~i~~i~~-~~~~~~----~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~  184 (394)
T COG4886         110 SELLELTNLTSLDLDNNNITDIPP-LIGLLK----SNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSN  184 (394)
T ss_pred             hhhhcccceeEEecCCcccccCcc-ccccch----hhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhh
Confidence            344556778888888887664221 111121    1455555555555666533 368899999999999887654    


Q ss_pred             cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEecc
Q 025516          131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLS  209 (251)
Q Consensus       131 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~  209 (251)
                      .+.|+.|++++|+ ...+|..++.+..|+++.+++|.......... +..+..+.+.+|++..++..++.+++++.|+++
T Consensus       185 ~~~L~~L~ls~N~-i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s  263 (394)
T COG4886         185 LSNLNNLDLSGNK-ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLS  263 (394)
T ss_pred             hhhhhheeccCCc-cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhccccccceeccc
Confidence            4578889999886 66777766667778999999986444443333 677888888888888878888899999999999


Q ss_pred             CCcCCccCcccccCCCCCCEEeccCCcCCCCCChh
Q 025516          210 DCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR  244 (251)
Q Consensus       210 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~  244 (251)
                      +|.+... +. ++.+.+++.|++++|.+....|..
T Consensus       264 ~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         264 NNQISSI-SS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccccccc-cc-ccccCccCEEeccCccccccchhh
Confidence            9886544 33 889999999999998887766654

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=2.8e-10  Score=85.60  Aligned_cols=118  Identities=30%  Similarity=0.238  Sum_probs=44.1

Q ss_pred             cCCCcccc---ccCcCCccEEEcCCCcCCccccCccc-cCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCc
Q 025516          120 VPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPS  195 (251)
Q Consensus       120 l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~  195 (251)
                      +..+.|+.   +.+..+++.|+|++|.+. .+. .++ .+.+|+.|++++|.+.+.-.-..++.|++|++++|.|+.+++
T Consensus         4 lt~~~i~~~~~~~n~~~~~~L~L~~n~I~-~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~~   81 (175)
T PF14580_consen    4 LTANMIEQIAQYNNPVKLRELNLRGNQIS-TIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSISE   81 (175)
T ss_dssp             ----------------------------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-CH
T ss_pred             ccccccccccccccccccccccccccccc-ccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCcccc
Confidence            34455544   344557999999998744 443 465 578999999999987654333338999999999999999976


Q ss_pred             cc-ccCccCCEEeccCCcCCccC-cccccCCCCCCEEeccCCcCCC
Q 025516          196 SF-ELLLRLWLLDLSDCKRLKSL-PSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       196 ~~-~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      .+ ..+++|+.|++++|++...- -..+..+++|+.|++.+|+...
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~  127 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCE  127 (175)
T ss_dssp             HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred             chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccc
Confidence            55 46999999999999976422 2567889999999999998764

>PLN03150 hypothetical protein; Provisional

Probab=98.98  E-value=1.2e-09  Score=98.53  Aligned_cols=92  Identities=32%  Similarity=0.396  Sum_probs=84.5

Q ss_pred             CccEEecCCCCCCCCCCccc--cCCccEEEccccCCc-cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEecc
Q 025516          157 FLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLR  233 (251)
Q Consensus       157 ~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  233 (251)
                      .++.|++++|.+.+.+|...  +++|+.|+|++|.+. .+|..++.+++|+.|++++|++.+.+|..++++++|+.|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            37889999999888888754  899999999999998 789899999999999999999999999999999999999999


Q ss_pred             CCcCCCCCChhhhhc
Q 025516          234 GCSNLQRLPDRLASY  248 (251)
Q Consensus       234 ~n~~~~~~p~~l~~l  248 (251)
                      +|++.+.+|..++.+
T Consensus       499 ~N~l~g~iP~~l~~~  513 (623)
T PLN03150        499 GNSLSGRVPAALGGR  513 (623)
T ss_pred             CCcccccCChHHhhc
Confidence            999999999987653

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.95  E-value=7.1e-10  Score=68.85  Aligned_cols=60  Identities=32%  Similarity=0.383  Sum_probs=52.9

Q ss_pred             CCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcC
Q 025516          178 GNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSN  237 (251)
Q Consensus       178 ~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~  237 (251)
                      ++|++|++++|+++.+|. .+.++++|+.|++++|.+....|..+.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            468899999999999886 678999999999999998777778899999999999999864

...

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.86  E-value=3.5e-10  Score=90.05  Aligned_cols=124  Identities=29%  Similarity=0.226  Sum_probs=97.8

Q ss_pred             CCceEeecCCCcccccc----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccc
Q 025516          113 EKLMFLEVPNSDIEQLW----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSG  187 (251)
Q Consensus       113 ~~L~~L~l~~n~i~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~  187 (251)
                      ..|+++|+++|.|+.+.    -.+++++|++++|.+.. +. .+..+.+|+.||+++|.......... +-+.+.|.+++
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            45899999999997554    35689999999987543 32 27778999999999997654443322 67899999999


Q ss_pred             cCCccCCcccccCccCCEEeccCCcCCcc-CcccccCCCCCCEEeccCCcCCC
Q 025516          188 TAIEELPSSFELLLRLWLLDLSDCKRLKS-LPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       188 n~i~~lp~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      |.|..+. .++++-+|..||+++|++... -...++++|-|+++.+.+|++.+
T Consensus       362 N~iE~LS-GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~  413 (490)
T KOG1259|consen  362 NKIETLS-GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAG  413 (490)
T ss_pred             hhHhhhh-hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccc
Confidence            9887664 678889999999999997643 24789999999999999987764

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.83  E-value=3.7e-09  Score=90.61  Aligned_cols=173  Identities=23%  Similarity=0.286  Sum_probs=126.2

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCC-CccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcC
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMR-KLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAE  113 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~  113 (251)
                      ..+..+.+..+.+..+   +.....+. +|+.|++++|.+.... ..+..++.++.+++..|+     +..+|... .+.
T Consensus       116 ~~l~~L~l~~n~i~~i---~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~~l~~L~~L~l~~N~-----l~~l~~~~~~~~  186 (394)
T COG4886         116 TNLTSLDLDNNNITDI---PPLIGLLKSNLKELDLSDNKIESLP-SPLRNLPNLKNLDLSFND-----LSDLPKLLSNLS  186 (394)
T ss_pred             cceeEEecCCcccccC---ccccccchhhcccccccccchhhhh-hhhhccccccccccCCch-----hhhhhhhhhhhh
Confidence            3455555555555444   33444553 9999999999876421 234555555555555554     45677766 789


Q ss_pred             CceEeecCCCccccccC---cC-CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCC-CCccccCCccEEEcccc
Q 025516          114 KLMFLEVPNSDIEQLWN---SV-KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKR-LPEISSGNIGQLFLSGT  188 (251)
Q Consensus       114 ~L~~L~l~~n~i~~l~~---~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~~~~L~~L~l~~n  188 (251)
                      +|+.+++++|++..++.   .. .|++|.+++|. ....+..+.++.++..+.+..|+.... .....++.++.|++++|
T Consensus       187 ~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~-~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~l~~l~~L~~s~n  265 (394)
T COG4886         187 NLNNLDLSGNKISDLPPEIELLSALEELDLSNNS-IIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDLSNN  265 (394)
T ss_pred             hhhheeccCCccccCchhhhhhhhhhhhhhcCCc-ceecchhhhhcccccccccCCceeeeccchhccccccceeccccc
Confidence            99999999999998876   34 49999999985 445566688888999999888876552 22233678999999999


Q ss_pred             CCccCCcccccCccCCEEeccCCcCCccCcc
Q 025516          189 AIEELPSSFELLLRLWLLDLSDCKRLKSLPS  219 (251)
Q Consensus       189 ~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~  219 (251)
                      .++.++. ++.+.+++.|++++|.+....|.
T Consensus       266 ~i~~i~~-~~~~~~l~~L~~s~n~~~~~~~~  295 (394)
T COG4886         266 QISSISS-LGSLTNLRELDLSGNSLSNALPL  295 (394)
T ss_pred             ccccccc-ccccCccCEEeccCccccccchh
Confidence            9999987 88999999999999987655544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=4.7e-10  Score=93.17  Aligned_cols=174  Identities=16%  Similarity=0.081  Sum_probs=121.8

Q ss_pred             hcCCCccEEEeecccCCCCCc-cccccCCcceecceeEEeeccCCCCCCCC---CC-CcCCceEeecCCCcccccc----
Q 025516           59 AKMRKLRFLKFYSSSFNGENR-CKVSHLQDLRFAEVKYLHWHGYPLKSLPS---NH-SAEKLMFLEVPNSDIEQLW----  129 (251)
Q Consensus        59 ~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~l~~l~L~~~~l~~~~~~~~~~---~~-~l~~L~~L~l~~n~i~~l~----  129 (251)
                      .++.+|+...+.+........ .....+..++.++|+.|-+.     .+-.   .. .+++|+.|+++.|.+....    
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~-----nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~  192 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH-----NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNT  192 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHH-----hHHHHHHHHHhcccchhcccccccccCCccccc
Confidence            367888999998887654222 12233444444444444433     3322   12 6899999999999986432    


Q ss_pred             --CcCCccEEEcCCCcCCccccCcc-ccCCCccEEecCCCCCCC--CCCccccCCccEEEccccCCccCC--cccccCcc
Q 025516          130 --NSVKLVILNLSGSKSLKSLPAGI-FNLEFLTELDLSGCSKLK--RLPEISSGNIGQLFLSGTAIEELP--SSFELLLR  202 (251)
Q Consensus       130 --~~~~L~~L~l~~n~~~~~~~~~~-~~l~~L~~L~l~~n~~~~--~~~~~~~~~L~~L~l~~n~i~~lp--~~~~~l~~  202 (251)
                        .+.+|+.|.++.|.+....-.++ ..+++|+.|.+.+|....  ..+...++.|++|+|++|.+-.++  ...+.++.
T Consensus       193 ~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~  272 (505)
T KOG3207|consen  193 TLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPG  272 (505)
T ss_pred             hhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccc
Confidence              35689999999999776443333 368999999999985332  333344889999999999988777  45789999


Q ss_pred             CCEEeccCCcCCccC-ccc-----ccCCCCCCEEeccCCcC
Q 025516          203 LWLLDLSDCKRLKSL-PSS-----LCKLKSLELLSLRGCSN  237 (251)
Q Consensus       203 L~~L~l~~n~~~~~~-p~~-----~~~l~~L~~L~l~~n~~  237 (251)
                      |..|.++.|.+.+.. |..     -...++|++|++..|++
T Consensus       273 L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  273 LNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            999999999876432 332     24578999999999877

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.77  E-value=5.3e-09  Score=83.46  Aligned_cols=106  Identities=25%  Similarity=0.101  Sum_probs=85.7

Q ss_pred             cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEec
Q 025516          129 WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDL  208 (251)
Q Consensus       129 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l  208 (251)
                      +..+.|+.+|+++|. ...+..++.-.+.++.|+++.|++...-.-..+++|+.|++++|.++++.-+--++.+.+.|.+
T Consensus       281 dTWq~LtelDLS~N~-I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  281 DTWQELTELDLSGNL-ITQIDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             chHhhhhhccccccc-hhhhhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            334489999999986 6667777777889999999999877655544589999999999999877655567889999999


Q ss_pred             cCCcCCccCcccccCCCCCCEEeccCCcC
Q 025516          209 SDCKRLKSLPSSLCKLKSLELLSLRGCSN  237 (251)
Q Consensus       209 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~  237 (251)
                      ++|.+-. + .+++++.+|..||+.+|++
T Consensus       360 a~N~iE~-L-SGL~KLYSLvnLDl~~N~I  386 (490)
T KOG1259|consen  360 AQNKIET-L-SGLRKLYSLVNLDLSSNQI  386 (490)
T ss_pred             hhhhHhh-h-hhhHhhhhheeccccccch
Confidence            9988533 2 5688999999999999865

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.55  E-value=8.1e-08  Score=59.47  Aligned_cols=28  Identities=36%  Similarity=0.552  Sum_probs=14.4

Q ss_pred             ccccCCccCCc-ccccCccCCEEeccCCc
Q 025516          185 LSGTAIEELPS-SFELLLRLWLLDLSDCK  212 (251)
Q Consensus       185 l~~n~i~~lp~-~~~~l~~L~~L~l~~n~  212 (251)
                      +++|.++.+++ .+.++++|+.|++++|+
T Consensus        32 l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   32 LSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             ETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             ccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            33344444433 34566666666666654

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.54  E-value=4e-07  Score=76.91  Aligned_cols=56  Identities=20%  Similarity=0.261  Sum_probs=29.8

Q ss_pred             eeEEeeccCCCCCCCCCCCcCCceEeecCC-CccccccC--cCCccEEEcCCCcCCccccC
Q 025516           93 VKYLHWHGYPLKSLPSNHSAEKLMFLEVPN-SDIEQLWN--SVKLVILNLSGSKSLKSLPA  150 (251)
Q Consensus        93 L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~-n~i~~l~~--~~~L~~L~l~~n~~~~~~~~  150 (251)
                      ++.++++++.+..+|.  -..+|++|.+++ +.+..++.  ..+|++|++++|.....+|.
T Consensus        54 l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP~  112 (426)
T PRK15386         54 SGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLPE  112 (426)
T ss_pred             CCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCccccccccc
Confidence            4455555555666662  234577777665 33333332  23577777777644444443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.52  E-value=8.2e-09  Score=83.62  Aligned_cols=182  Identities=19%  Similarity=0.139  Sum_probs=111.9

Q ss_pred             hhhhcCCCccEEEeecccCCCCCcccc----ccCCcceecceeEEeeccCCCCCCCC----------CCCcCCceEeecC
Q 025516           56 NTFAKMRKLRFLKFYSSSFNGENRCKV----SHLQDLRFAEVKYLHWHGYPLKSLPS----------NHSAEKLMFLEVP  121 (251)
Q Consensus        56 ~~~~~l~~L~~L~l~~n~~~~~~~~~l----~~l~~l~~l~L~~~~l~~~~~~~~~~----------~~~l~~L~~L~l~  121 (251)
                      +++-++++|++++||+|.|....+..|    .++..|+.+.|.+|.+.--.-+.+..          .-..+.|+.+..+
T Consensus        86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~  165 (382)
T KOG1909|consen   86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG  165 (382)
T ss_pred             HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence            345567788888888887765444433    33455555666555544211111111          0134677888888


Q ss_pred             CCcccc---------ccCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCCCC----cc--ccCCccE
Q 025516          122 NSDIEQ---------LWNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKRLP----EI--SSGNIGQ  182 (251)
Q Consensus       122 ~n~i~~---------l~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~--~~~~L~~  182 (251)
                      +|.+..         +...+.|+.+.+..|.+-..    +...+..+++|+.||+.+|-+...-.    ..  .++.|++
T Consensus       166 rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~E  245 (382)
T KOG1909|consen  166 RNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRE  245 (382)
T ss_pred             ccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchhee
Confidence            887642         23345777887777653322    12334567888888888886654221    11  1567888


Q ss_pred             EEccccCCc-----cCCccc-ccCccCCEEeccCCcCCcc----CcccccCCCCCCEEeccCCcC
Q 025516          183 LFLSGTAIE-----ELPSSF-ELLLRLWLLDLSDCKRLKS----LPSSLCKLKSLELLSLRGCSN  237 (251)
Q Consensus       183 L~l~~n~i~-----~lp~~~-~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~  237 (251)
                      +++++|.++     .+-..+ ...|.|+.|.+.+|.+...    +...+...+.|..|++++|.+
T Consensus       246 l~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  246 LNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             ecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            999888876     122333 3578889999999887743    223456678899999998766

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.47  E-value=1.1e-08  Score=82.96  Aligned_cols=158  Identities=18%  Similarity=0.156  Sum_probs=113.9

Q ss_pred             hhhhcCCCccEEEeecccCCCCCcccc-------------ccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecC
Q 025516           56 NTFAKMRKLRFLKFYSSSFNGENRCKV-------------SHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVP  121 (251)
Q Consensus        56 ~~~~~l~~L~~L~l~~n~~~~~~~~~l-------------~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~  121 (251)
                      .-+..+..|+.|++.+|.+.......+             +....|+++....|++.+.+...+...+ ..+.|+.+.+.
T Consensus       114 ~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~  193 (382)
T KOG1909|consen  114 ELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLS  193 (382)
T ss_pred             HHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEe
Confidence            345578999999999999775443332             3344555666666666655444444444 35789999999


Q ss_pred             CCccc---------cccCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCCCCc-------cccCCcc
Q 025516          122 NSDIE---------QLWNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKRLPE-------ISSGNIG  181 (251)
Q Consensus       122 ~n~i~---------~l~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~-------~~~~~L~  181 (251)
                      .|.|.         .+..+++|++|||+.|.+...    +...+..+++|++|.+++|.....-..       -..+.|+
T Consensus       194 qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~  273 (382)
T KOG1909|consen  194 QNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLE  273 (382)
T ss_pred             cccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCc
Confidence            99884         356788999999999987753    334456688999999999975542111       1178999


Q ss_pred             EEEccccCCcc-----CCcccccCccCCEEeccCCcC
Q 025516          182 QLFLSGTAIEE-----LPSSFELLLRLWLLDLSDCKR  213 (251)
Q Consensus       182 ~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~  213 (251)
                      .|.+.+|.|+.     +...+...+.|..|+|++|.+
T Consensus       274 vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  274 VLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             eeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            99999999982     333455689999999999997

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.38  E-value=3.3e-07  Score=85.23  Aligned_cols=130  Identities=33%  Similarity=0.397  Sum_probs=85.9

Q ss_pred             CCCCCCcCCceEeecCCCccccc---cCcCCccEEEcCCCcC-CccccC-ccccCCCccEEecCCCCCCCCCCccc--cC
Q 025516          106 LPSNHSAEKLMFLEVPNSDIEQL---WNSVKLVILNLSGSKS-LKSLPA-GIFNLEFLTELDLSGCSKLKRLPEIS--SG  178 (251)
Q Consensus       106 ~~~~~~l~~L~~L~l~~n~i~~l---~~~~~L~~L~l~~n~~-~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~--~~  178 (251)
                      .|........+.+.+-+|.+..+   ...++|+.|-+..|.. ...++. .|..++.|+.||+++|...+.+|..+  +-
T Consensus       516 ~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li  595 (889)
T KOG4658|consen  516 IPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELV  595 (889)
T ss_pred             cccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhh
Confidence            33333344455555555555432   2334577777766642 233333 24457777777777777777777655  67


Q ss_pred             CccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 025516          179 NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       179 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n  235 (251)
                      +|+.|++++..++.+|..+++++.|.+|++..+.....+|.....+++|++|.+..-
T Consensus       596 ~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  596 HLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             hhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence            777888888888888888888888888888887766666776677888888877653

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.33  E-value=9.2e-08  Score=82.53  Aligned_cols=105  Identities=22%  Similarity=0.245  Sum_probs=56.8

Q ss_pred             hhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccccc---CcCCc
Q 025516           58 FAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLW---NSVKL  134 (251)
Q Consensus        58 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~---~~~~L  134 (251)
                      +..+.+|..+++.+|.+...... +..+.+|+.++     ++++.++.+...-.+..|+.|++++|.|..+.   .+..|
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~-l~~~~~L~~L~-----ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L  164 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENL-LSSLVNLQVLD-----LSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSL  164 (414)
T ss_pred             cccccceeeeeccccchhhcccc-hhhhhcchhee-----ccccccccccchhhccchhhheeccCcchhccCCccchhh
Confidence            45667777777777766542211 22233333333     33333334444334556777777777776443   34567


Q ss_pred             cEEEcCCCcCCcccc-CccccCCCccEEecCCCCCC
Q 025516          135 VILNLSGSKSLKSLP-AGIFNLEFLTELDLSGCSKL  169 (251)
Q Consensus       135 ~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~  169 (251)
                      +.+++++|.+...-+ . ...+.+++.+.+.+|.+.
T Consensus       165 ~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  165 KLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             hcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence            777777766443322 1 345666666666666543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.28  E-value=8.2e-07  Score=50.83  Aligned_cols=36  Identities=33%  Similarity=0.372  Sum_probs=25.0

Q ss_pred             CccEEEccccCCccCCcccccCccCCEEeccCCcCC
Q 025516          179 NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRL  214 (251)
Q Consensus       179 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~  214 (251)
                      +|++|++++|+|+++|..+++|++|+.|++++|++.
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence            567777777777777766777777777777777754

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.28  E-value=4.1e-08  Score=69.64  Aligned_cols=107  Identities=21%  Similarity=0.215  Sum_probs=70.8

Q ss_pred             ccEEEcCCCcCCcccc---CccccCCCccEEecCCCCCCCCCCccc---cCCccEEEccccCCccCCcccccCccCCEEe
Q 025516          134 LVILNLSGSKSLKSLP---AGIFNLEFLTELDLSGCSKLKRLPEIS---SGNIGQLFLSGTAIEELPSSFELLLRLWLLD  207 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~---~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~  207 (251)
                      +-.++|+.|. ...++   ..+.+...|+..++++|.+ +.+|..+   ++..+.|++++|.|+++|.++..++.|+.|+
T Consensus        29 ~h~ldLssc~-lm~i~davy~l~~~~el~~i~ls~N~f-k~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQ-LMYIADAVYMLSKGYELTKISLSDNGF-KKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccch-hhHHHHHHHHHhCCceEEEEecccchh-hhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            4456666665 33333   3344455667777777764 3344322   5678888888888888888888888888888


Q ss_pred             ccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChh
Q 025516          208 LSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR  244 (251)
Q Consensus       208 l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~  244 (251)
                      ++.|++ ...|..+..+.++..|+..+|.. .++|.+
T Consensus       107 l~~N~l-~~~p~vi~~L~~l~~Lds~~na~-~eid~d  141 (177)
T KOG4579|consen  107 LRFNPL-NAEPRVIAPLIKLDMLDSPENAR-AEIDVD  141 (177)
T ss_pred             cccCcc-ccchHHHHHHHhHHHhcCCCCcc-ccCcHH
Confidence            888884 44566666677888887777543 355543

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.26  E-value=2.1e-07  Score=80.28  Aligned_cols=101  Identities=30%  Similarity=0.274  Sum_probs=55.1

Q ss_pred             CcCCceEeecCCCcccccc----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEcc
Q 025516          111 SAEKLMFLEVPNSDIEQLW----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLS  186 (251)
Q Consensus       111 ~l~~L~~L~l~~n~i~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~  186 (251)
                      .+.+|..+++..|+|..+.    .+++|++|++++|.+.. +. .+..++.|+.|++++|.+...-.-..+..|+.++++
T Consensus        93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~-i~-~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITK-LE-GLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLS  170 (414)
T ss_pred             cccceeeeeccccchhhcccchhhhhcchheecccccccc-cc-chhhccchhhheeccCcchhccCCccchhhhcccCC
Confidence            4566666666666665433    35566666666665332 22 133455566666666654332222225566666666


Q ss_pred             ccCCccCCcc-cccCccCCEEeccCCcC
Q 025516          187 GTAIEELPSS-FELLLRLWLLDLSDCKR  213 (251)
Q Consensus       187 ~n~i~~lp~~-~~~l~~L~~L~l~~n~~  213 (251)
                      +|.+..++.. ...+.+++.+++++|.+
T Consensus       171 ~n~i~~ie~~~~~~~~~l~~l~l~~n~i  198 (414)
T KOG0531|consen  171 YNRIVDIENDELSELISLEELDLGGNSI  198 (414)
T ss_pred             cchhhhhhhhhhhhccchHHHhccCCch
Confidence            6666655442 34555666666666554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.22  E-value=2.8e-08  Score=87.75  Aligned_cols=120  Identities=31%  Similarity=0.252  Sum_probs=71.3

Q ss_pred             CceEeecCCCccc----cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccc
Q 025516          114 KLMFLEVPNSDIE----QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSG  187 (251)
Q Consensus       114 ~L~~L~l~~n~i~----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~  187 (251)
                      .|...++++|.+.    .+--++.|+.|+|++|++...-  .+..++.|.+||+++|. +..+|...  -..|..|.+.+
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~L~~L~lrn  241 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNC-LRHVPQLSMVGCKLQLLNLRN  241 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccch-hccccccchhhhhheeeeecc
Confidence            3455556666553    2333456777777777644322  45567777777777775 34444433  23377777777


Q ss_pred             cCCccCCcccccCccCCEEeccCCcCCccCc-ccccCCCCCCEEeccCCcC
Q 025516          188 TAIEELPSSFELLLRLWLLDLSDCKRLKSLP-SSLCKLKSLELLSLRGCSN  237 (251)
Q Consensus       188 n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~  237 (251)
                      |.++.+- .+.++++|+.||+++|-+.+--- .-+..+.+|+.|++.+|++
T Consensus       242 N~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  242 NALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             cHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            7766554 45567777777777776542211 2245566677777777654

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.20  E-value=3.7e-06  Score=71.15  Aligned_cols=115  Identities=28%  Similarity=0.416  Sum_probs=81.6

Q ss_pred             cCCceEeecCCCccccccCcC-CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCC
Q 025516          112 AEKLMFLEVPNSDIEQLWNSV-KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAI  190 (251)
Q Consensus       112 l~~L~~L~l~~n~i~~l~~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i  190 (251)
                      +.++..|++++|.+..++.++ +|+.|.+++|.....+|..+  ..+|+.|++++|..+..+|    .+|+.|+++++..
T Consensus        51 ~~~l~~L~Is~c~L~sLP~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP----~sLe~L~L~~n~~  124 (426)
T PRK15386         51 ARASGRLYIKDCDIESLPVLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP----ESVRSLEIKGSAT  124 (426)
T ss_pred             hcCCCEEEeCCCCCcccCCCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc----cccceEEeCCCCC
Confidence            578999999999999998776 59999999988777778755  4689999999996555554    4678888877653


Q ss_pred             ---ccCCcccccC------------------ccCCEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 025516          191 ---EELPSSFELL------------------LRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       191 ---~~lp~~~~~l------------------~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n  235 (251)
                         ..+|..+..+                  ++|+.|++++|... .+|..+.  .+|++|.++.+
T Consensus       125 ~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~n  187 (426)
T PRK15386        125 DSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHIE  187 (426)
T ss_pred             cccccCcchHhheeccccccccccccccccCCcccEEEecCCCcc-cCccccc--ccCcEEEeccc
Confidence               4566544322                  35677777776643 2333222  46777777664

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.09  E-value=3.3e-08  Score=87.32  Aligned_cols=100  Identities=21%  Similarity=0.119  Sum_probs=77.7

Q ss_pred             cCCceEeecCCCccc---cccCcCCccEEEcCCCcCCccccC-ccccCCCccEEecCCCCCCCCCCccccCCccEEEccc
Q 025516          112 AEKLMFLEVPNSDIE---QLWNSVKLVILNLSGSKSLKSLPA-GIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSG  187 (251)
Q Consensus       112 l~~L~~L~l~~n~i~---~l~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~  187 (251)
                      ++.+++|++++|++.   .+..+++|+.|||++|. +..+|. +..++. |..|.+++|...+-..-..+.+|+.|++++
T Consensus       186 l~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~-L~~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~LksL~~LDlsy  263 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNC-LRHVPQLSMVGCK-LQLLNLRNNALTTLRGIENLKSLYGLDLSY  263 (1096)
T ss_pred             HHHhhhhccchhhhhhhHHHHhcccccccccccch-hccccccchhhhh-heeeeecccHHHhhhhHHhhhhhhccchhH
Confidence            577999999999986   46778899999999987 555554 222444 999999999866555545589999999999


Q ss_pred             cCCccCCc--ccccCccCCEEeccCCcC
Q 025516          188 TAIEELPS--SFELLLRLWLLDLSDCKR  213 (251)
Q Consensus       188 n~i~~lp~--~~~~l~~L~~L~l~~n~~  213 (251)
                      |-+.+..+  .++.+..|+.|+|.+|++
T Consensus       264 Nll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  264 NLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             hhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            98874332  356788999999999985

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=6.8e-08  Score=77.09  Aligned_cols=169  Identities=23%  Similarity=0.253  Sum_probs=110.6

Q ss_pred             CCccEEEeecccCCCCC-ccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCC-ccc------cccCcCC
Q 025516           62 RKLRFLKFYSSSFNGEN-RCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNS-DIE------QLWNSVK  133 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~-~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n-~i~------~l~~~~~  133 (251)
                      +.|++++++...++... ..-+..+..++.+.++.+.+++.-...++   .-.+|+.++++.+ +++      -+..+..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iA---kN~~L~~lnlsm~sG~t~n~~~ll~~scs~  261 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIA---KNSNLVRLNLSMCSGFTENALQLLLSSCSR  261 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHh---ccccceeeccccccccchhHHHHHHHhhhh
Confidence            46899999987766421 12235567777888888888763222222   3467888888765 333      2456778


Q ss_pred             ccEEEcCCCcCCccccCc-ccc-CCCccEEecCCCCCCC---CCCccc--cCCccEEEccccCC-c-cCCcccccCccCC
Q 025516          134 LVILNLSGSKSLKSLPAG-IFN-LEFLTELDLSGCSKLK---RLPEIS--SGNIGQLFLSGTAI-E-ELPSSFELLLRLW  204 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~~~-~~~-l~~L~~L~l~~n~~~~---~~~~~~--~~~L~~L~l~~n~i-~-~lp~~~~~l~~L~  204 (251)
                      |..|+++.|......... +.. =.+|+.|++++++..-   .+....  +++|.+|+|++|.. + ..-..+.+++.|+
T Consensus       262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~  341 (419)
T KOG2120|consen  262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQ  341 (419)
T ss_pred             HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchhe
Confidence            999999888655432211 111 2468888898875432   122122  88999999998753 3 3334577899999


Q ss_pred             EEeccCCcCCccCcc---cccCCCCCCEEeccCC
Q 025516          205 LLDLSDCKRLKSLPS---SLCKLKSLELLSLRGC  235 (251)
Q Consensus       205 ~L~l~~n~~~~~~p~---~~~~l~~L~~L~l~~n  235 (251)
                      +|.++.|.  +.+|.   .+...|+|.+|++.+|
T Consensus       342 ~lSlsRCY--~i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  342 HLSLSRCY--DIIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             eeehhhhc--CCChHHeeeeccCcceEEEEeccc
Confidence            99999887  34454   4578899999998875

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.06  E-value=1.4e-07  Score=75.34  Aligned_cols=131  Identities=28%  Similarity=0.279  Sum_probs=83.5

Q ss_pred             cCCceEeecCCCccc-----cccCcCCccEEEcCCCcCCccc--cCccccCCCccEEecCCCCCCCCCCc----cccCCc
Q 025516          112 AEKLMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSL--PAGIFNLEFLTELDLSGCSKLKRLPE----ISSGNI  180 (251)
Q Consensus       112 l~~L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~--~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L  180 (251)
                      +..|+-+.+.++++.     .+..-.+|+.|++++|.-....  .--+.+++.|.+|++++|...+..-.    ..-++|
T Consensus       209 C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l  288 (419)
T KOG2120|consen  209 CSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETL  288 (419)
T ss_pred             HHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhh
Confidence            345555555555553     3445557778887776433221  11234677788888888866554322    125678


Q ss_pred             cEEEccccC----CccCCcccccCccCCEEeccCCcCCcc-CcccccCCCCCCEEeccCCcCCCCCChh
Q 025516          181 GQLFLSGTA----IEELPSSFELLLRLWLLDLSDCKRLKS-LPSSLCKLKSLELLSLRGCSNLQRLPDR  244 (251)
Q Consensus       181 ~~L~l~~n~----i~~lp~~~~~l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~~~~~p~~  244 (251)
                      +.|+++|+.    .+.+..-...+|+|..||+++|.-++. ....+-+++.|++|.++.|-  +.+|..
T Consensus       289 ~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY--~i~p~~  355 (419)
T KOG2120|consen  289 TQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY--DIIPET  355 (419)
T ss_pred             hhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc--CCChHH
Confidence            888888873    223443456899999999999875543 34567889999999999983  334443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.03  E-value=2.1e-06  Score=68.80  Aligned_cols=169  Identities=14%  Similarity=0.137  Sum_probs=100.1

Q ss_pred             cCCCccEEEeecccCCCCC--ccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccc------cccCc
Q 025516           60 KMRKLRFLKFYSSSFNGEN--RCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIE------QLWNS  131 (251)
Q Consensus        60 ~l~~L~~L~l~~n~~~~~~--~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~------~l~~~  131 (251)
                      .++.++.+++.+|.++...  ..-+.++++++.++++.|.+.. .++.+|  ..+.+|+.+-+.++.++      .+..+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I~~lp--~p~~nl~~lVLNgT~L~w~~~~s~l~~l  145 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DIKSLP--LPLKNLRVLVLNGTGLSWTQSTSSLDDL  145 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-ccccCc--ccccceEEEEEcCCCCChhhhhhhhhcc
Confidence            4677777777777766421  1223456666666666665543 233333  24567777777776664      24455


Q ss_pred             CCccEEEcCCCcCCcc---------c-c------------------Cccc-cCCCccEEecCCCCCCCCCCc---cccCC
Q 025516          132 VKLVILNLSGSKSLKS---------L-P------------------AGIF-NLEFLTELDLSGCSKLKRLPE---ISSGN  179 (251)
Q Consensus       132 ~~L~~L~l~~n~~~~~---------~-~------------------~~~~-~l~~L~~L~l~~n~~~~~~~~---~~~~~  179 (251)
                      +.++.|.++.|.+...         . |                  ..++ .++++..+.++.|++-+....   ..++.
T Consensus       146 P~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~  225 (418)
T KOG2982|consen  146 PKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPS  225 (418)
T ss_pred             hhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCc
Confidence            5566666665521110         0 0                  0011 245666677777754432222   12667


Q ss_pred             ccEEEccccCCccCCc--ccccCccCCEEeccCCcCCccCcc------cccCCCCCCEEe
Q 025516          180 IGQLFLSGTAIEELPS--SFELLLRLWLLDLSDCKRLKSLPS------SLCKLKSLELLS  231 (251)
Q Consensus       180 L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~~n~~~~~~p~------~~~~l~~L~~L~  231 (251)
                      +--|+|+.++|..+.+  .+.+++.|+.|.++++++...+-.      .++.+++++.|+
T Consensus       226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLN  285 (418)
T KOG2982|consen  226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLN  285 (418)
T ss_pred             chhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEec
Confidence            7788899999887653  678899999999999987654322      357778877774

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.93  E-value=2.4e-05  Score=59.29  Aligned_cols=98  Identities=20%  Similarity=0.220  Sum_probs=69.1

Q ss_pred             cCCceEeecCCCccc---cccCcCCccEEEcCCCcCCccccCccc-cCCCccEEecCCCCCC--CCCCccc-cCCccEEE
Q 025516          112 AEKLMFLEVPNSDIE---QLWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKL--KRLPEIS-SGNIGQLF  184 (251)
Q Consensus       112 l~~L~~L~l~~n~i~---~l~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~--~~~~~~~-~~~L~~L~  184 (251)
                      +.+...+++++|.+.   .++.+..|..|.+.+|++...-|. ++ .+++|..|.+++|.+-  +++.... ++.|++|.
T Consensus        41 ~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~-L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPD-LDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccccceecccccchhhcccCCCccccceEEecCCcceeeccc-hhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            466778888888875   566677888888988875544444 44 4677888888888643  2333322 78888888


Q ss_pred             ccccCCccCCc----ccccCccCCEEeccC
Q 025516          185 LSGTAIEELPS----SFELLLRLWLLDLSD  210 (251)
Q Consensus       185 l~~n~i~~lp~----~~~~l~~L~~L~l~~  210 (251)
                      +-+|.++.-+.    -+..+|+|+.||...
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhh
Confidence            88888875442    357888888888765

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.89  E-value=1.6e-05  Score=45.41  Aligned_cols=37  Identities=35%  Similarity=0.355  Sum_probs=30.9

Q ss_pred             ccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC
Q 025516          201 LRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL  238 (251)
Q Consensus       201 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~  238 (251)
                      ++|+.|++++|++. .+|..+++|++|++|++++|++.
T Consensus         1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            57999999999976 56777999999999999998765

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.79  E-value=1.2e-06  Score=62.29  Aligned_cols=118  Identities=19%  Similarity=0.215  Sum_probs=63.4

Q ss_pred             ccCcCCccEEEcCCCcCCccccCccc-cCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCC
Q 025516          128 LWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLW  204 (251)
Q Consensus       128 l~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~  204 (251)
                      +.....|...++++|. ....|..+. .++.+++|++++|.+ .++|.-.  ++.|+.|+++.|.+...|.-+..+.++-
T Consensus        49 l~~~~el~~i~ls~N~-fk~fp~kft~kf~t~t~lNl~~nei-sdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~  126 (177)
T KOG4579|consen   49 LSKGYELTKISLSDNG-FKKFPKKFTIKFPTATTLNLANNEI-SDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLD  126 (177)
T ss_pred             HhCCceEEEEecccch-hhhCCHHHhhccchhhhhhcchhhh-hhchHHHhhhHHhhhcccccCccccchHHHHHHHhHH
Confidence            3444556666666665 334444444 344666666666653 3444322  6667777777777776666555566666


Q ss_pred             EEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          205 LLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       205 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      .|+.-+|.. ..+|-++-.-++.-..++.+++..++-|..++.+
T Consensus       127 ~Lds~~na~-~eid~dl~~s~~~al~~lgnepl~~~~~~klqa~  169 (177)
T KOG4579|consen  127 MLDSPENAR-AEIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL  169 (177)
T ss_pred             HhcCCCCcc-ccCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence            666665553 3344333222223333445555555555555443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.65  E-value=0.00013  Score=55.40  Aligned_cols=78  Identities=15%  Similarity=0.020  Sum_probs=39.3

Q ss_pred             CcCCceEeecCCCccccccC-----cCCccEEEcCCCcCCccc-cCccccCCCccEEecCCCCCCCCCCc-----cccCC
Q 025516          111 SAEKLMFLEVPNSDIEQLWN-----SVKLVILNLSGSKSLKSL-PAGIFNLEFLTELDLSGCSKLKRLPE-----ISSGN  179 (251)
Q Consensus       111 ~l~~L~~L~l~~n~i~~l~~-----~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~-----~~~~~  179 (251)
                      .+..|.+|.++.|.|..+.+     +++|..|.+.+|.+.... -+-+..+++|++|.+-+|+....-.-     ..+++
T Consensus        62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~  141 (233)
T KOG1644|consen   62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPS  141 (233)
T ss_pred             CccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCc
Confidence            55666666666666654432     334666666665433211 11234456666666666654332110     11556


Q ss_pred             ccEEEcccc
Q 025516          180 IGQLFLSGT  188 (251)
Q Consensus       180 L~~L~l~~n  188 (251)
                      |+.|++..-
T Consensus       142 l~~LDF~kV  150 (233)
T KOG1644|consen  142 LRTLDFQKV  150 (233)
T ss_pred             ceEeehhhh
Confidence            666665543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.60  E-value=7.7e-06  Score=74.45  Aligned_cols=81  Identities=22%  Similarity=0.193  Sum_probs=47.2

Q ss_pred             CcCCceEeecCCCccc---cccCcCCccEEEcCCCcCCc-cccCccccCCCccEEecCCCCCCCCC--C------ccccC
Q 025516          111 SAEKLMFLEVPNSDIE---QLWNSVKLVILNLSGSKSLK-SLPAGIFNLEFLTELDLSGCSKLKRL--P------EISSG  178 (251)
Q Consensus       111 ~l~~L~~L~l~~n~i~---~l~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~--~------~~~~~  178 (251)
                      ++++|..||+++++++   +++.+++|++|.+.+=.+.. ..-..+..|++|+.||+|..+.....  .      ...+|
T Consensus       171 sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~Lp  250 (699)
T KOG3665|consen  171 SFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLP  250 (699)
T ss_pred             ccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCc
Confidence            4677788888887776   45566677777766433221 11123556778888888775443321  1      01156


Q ss_pred             CccEEEccccCCc
Q 025516          179 NIGQLFLSGTAIE  191 (251)
Q Consensus       179 ~L~~L~l~~n~i~  191 (251)
                      .|+.||.++..+.
T Consensus       251 eLrfLDcSgTdi~  263 (699)
T KOG3665|consen  251 ELRFLDCSGTDIN  263 (699)
T ss_pred             cccEEecCCcchh
Confidence            6666666665554

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.50  E-value=4.7e-06  Score=66.19  Aligned_cols=99  Identities=21%  Similarity=0.116  Sum_probs=69.5

Q ss_pred             CCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCc--ccccCccCCEEecc
Q 025516          132 VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPS--SFELLLRLWLLDLS  209 (251)
Q Consensus       132 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~--~~~~l~~L~~L~l~  209 (251)
                      .+.+.|+.++|.+. .+. -+.+++.|+.|.++-|.+.+-.|-.-|+.|++|+|..|.|..+.+  .+.++|+|+.|+|.
T Consensus        19 ~~vkKLNcwg~~L~-DIs-ic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~   96 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD-DIS-ICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLD   96 (388)
T ss_pred             HHhhhhcccCCCcc-HHH-HHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhc
Confidence            34566677766532 221 123566777888887776555554447888888888888887654  46799999999999


Q ss_pred             CCcCCccCcc-----cccCCCCCCEEec
Q 025516          210 DCKRLKSLPS-----SLCKLKSLELLSL  232 (251)
Q Consensus       210 ~n~~~~~~p~-----~~~~l~~L~~L~l  232 (251)
                      .|+-.+.-+.     .+..+|+|++||=
T Consensus        97 ENPCc~~ag~nYR~~VLR~LPnLkKLDn  124 (388)
T KOG2123|consen   97 ENPCCGEAGQNYRRKVLRVLPNLKKLDN  124 (388)
T ss_pred             cCCcccccchhHHHHHHHHcccchhccC
Confidence            9987766553     4677899998863

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.40  E-value=5.4e-05  Score=69.03  Aligned_cols=127  Identities=20%  Similarity=0.133  Sum_probs=83.0

Q ss_pred             CCceEeecCCCccc--cc-----cCcCCccEEEcCCCcCCcc-ccCccccCCCccEEecCCCCCCCCCCccccCCccEEE
Q 025516          113 EKLMFLEVPNSDIE--QL-----WNSVKLVILNLSGSKSLKS-LPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLF  184 (251)
Q Consensus       113 ~~L~~L~l~~n~i~--~l-----~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~  184 (251)
                      .+|++|++++...-  ++     ..+|+|+.|.+++-.+... ...-..++++|+.||+|+..+..-..-..+++|+.|-
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~  201 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS  201 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence            67899998886542  22     2467889998887433222 1222346889999999998654443333378888888


Q ss_pred             ccccCCccCC--cccccCccCCEEeccCCcCCccC--c----ccccCCCCCCEEeccCCcCCC
Q 025516          185 LSGTAIEELP--SSFELLLRLWLLDLSDCKRLKSL--P----SSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       185 l~~n~i~~lp--~~~~~l~~L~~L~l~~n~~~~~~--p----~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      +.+=.+....  ..+.++++|++||+|.-......  .    +.-..+|+|+.||.++....+
T Consensus       202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            7776555333  24678999999999987643322  1    123458899999999765544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=97.31  E-value=0.00017  Score=57.40  Aligned_cols=102  Identities=17%  Similarity=0.179  Sum_probs=50.4

Q ss_pred             cchHHHHHhccCCCceEEEEeecCCccc--ccCCchhhhcCCCccEEEeecccCCCCCc-----------cccccCCcce
Q 025516           23 PDVVYEELSSKGTEKIEGICLDLSKVKE--IPLNPNTFAKMRKLRFLKFYSSSFNGENR-----------CKVSHLQDLR   89 (251)
Q Consensus        23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------~~l~~l~~l~   89 (251)
                      .+...+.........+..+.++.+.+++  .....+.+++-++|+..+++.- |++...           .++.++++++
T Consensus        17 eDvk~v~eel~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~   95 (388)
T COG5238          17 EDVKGVVEELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQ   95 (388)
T ss_pred             chhhHHHHHHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcce
Confidence            3444444444445666677777766643  2333456666777777777754 333221           1223344444


Q ss_pred             ecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCcc
Q 025516           90 FAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDI  125 (251)
Q Consensus        90 ~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i  125 (251)
                      ..+|+.|-+....+..+...+ ..+.|.+|.+++|++
T Consensus        96 ~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          96 KVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             eeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            444444444331111111111 345666666666655

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.93  E-value=0.00075  Score=53.27  Aligned_cols=102  Identities=25%  Similarity=0.232  Sum_probs=66.1

Q ss_pred             cCCccEEEcCCCcCCccccCccccCCCccEEecCCC--CCCCCCCccc--cCCccEEEccccCCccCC--cccccCccCC
Q 025516          131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGC--SKLKRLPEIS--SGNIGQLFLSGTAIEELP--SSFELLLRLW  204 (251)
Q Consensus       131 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n--~~~~~~~~~~--~~~L~~L~l~~n~i~~lp--~~~~~l~~L~  204 (251)
                      +..|+.|++.++..+..  ..+-.+++|+.|.++.|  +....+....  +++|+.+++++|++..+.  ..+..+.+|.
T Consensus        42 ~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   42 FVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             ccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            44677777776553321  22445788999999998  4434333322  689999999999887432  1345777888


Q ss_pred             EEeccCCcCCccC---cccccCCCCCCEEeccC
Q 025516          205 LLDLSDCKRLKSL---PSSLCKLKSLELLSLRG  234 (251)
Q Consensus       205 ~L~l~~n~~~~~~---p~~~~~l~~L~~L~l~~  234 (251)
                      .|++.+|.....-   -..+.-+++|.+|+-..
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~d  152 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCD  152 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhccccccc
Confidence            8888888755421   12456678888886654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.92  E-value=0.00061  Score=53.75  Aligned_cols=96  Identities=27%  Similarity=0.193  Sum_probs=53.7

Q ss_pred             CCceEeecCCCcc---ccccCcCCccEEEcCCCc--CCccccCccccCCCccEEecCCCCCC--CCCCccc-cCCccEEE
Q 025516          113 EKLMFLEVPNSDI---EQLWNSVKLVILNLSGSK--SLKSLPAGIFNLEFLTELDLSGCSKL--KRLPEIS-SGNIGQLF  184 (251)
Q Consensus       113 ~~L~~L~l~~n~i---~~l~~~~~L~~L~l~~n~--~~~~~~~~~~~l~~L~~L~l~~n~~~--~~~~~~~-~~~L~~L~  184 (251)
                      ..|+.+.+.+..+   ..++.+++|+.|.++.|+  ..+.++.....+++|+++++++|++.  ++++... +.+|..|+
T Consensus        43 ~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ld  122 (260)
T KOG2739|consen   43 VELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLD  122 (260)
T ss_pred             cchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhh
Confidence            4444444444443   345666677777777773  22333333334577777777777643  2333333 66677777


Q ss_pred             ccccCCccCCc----ccccCccCCEEec
Q 025516          185 LSGTAIEELPS----SFELLLRLWLLDL  208 (251)
Q Consensus       185 l~~n~i~~lp~----~~~~l~~L~~L~l  208 (251)
                      +..|..+.+-.    .+.-+++|+.|+-
T Consensus       123 l~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  123 LFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             cccCCccccccHHHHHHHHhhhhccccc
Confidence            77776664432    2445666776653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=96.77  E-value=0.00016  Score=57.54  Aligned_cols=181  Identities=15%  Similarity=0.086  Sum_probs=89.1

Q ss_pred             chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC---------------CCcCCceEee
Q 025516           55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN---------------HSAEKLMFLE  119 (251)
Q Consensus        55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~---------------~~l~~L~~L~  119 (251)
                      -+++.+|++|+..++|.|.|....+..+...-+ ...++.++.+++|.++.+...               ..-+.|+...
T Consensus        85 l~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is-~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vi  163 (388)
T COG5238          85 LKALLKCPRLQKVDLSDNAFGSEFPEELGDLIS-SSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVI  163 (388)
T ss_pred             HHHHhcCCcceeeeccccccCcccchHHHHHHh-cCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEE
Confidence            446667888888888888877554443321100 022333333343333333221               1235677777


Q ss_pred             cCCCccccccC---------cCCccEEEcCCCcCCccc-----cCccccCCCccEEecCCCCCCCCCC----ccc--cCC
Q 025516          120 VPNSDIEQLWN---------SVKLVILNLSGSKSLKSL-----PAGIFNLEFLTELDLSGCSKLKRLP----EIS--SGN  179 (251)
Q Consensus       120 l~~n~i~~l~~---------~~~L~~L~l~~n~~~~~~-----~~~~~~l~~L~~L~l~~n~~~~~~~----~~~--~~~  179 (251)
                      +..|++...+.         -..|+.+.+..|.+-...     -..+..+.+|+.||+..|-++..-.    ...  .+.
T Consensus       164 cgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~  243 (388)
T COG5238         164 CGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNL  243 (388)
T ss_pred             eccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccch
Confidence            77777643221         125666666665533221     1122345667777777765443211    111  234


Q ss_pred             ccEEEccccCCc-cCC----ccc--ccCccCCEEeccCCcCCcc------Cccc-ccCCCCCCEEeccCCc
Q 025516          180 IGQLFLSGTAIE-ELP----SSF--ELLLRLWLLDLSDCKRLKS------LPSS-LCKLKSLELLSLRGCS  236 (251)
Q Consensus       180 L~~L~l~~n~i~-~lp----~~~--~~l~~L~~L~l~~n~~~~~------~p~~-~~~l~~L~~L~l~~n~  236 (251)
                      |++|.+..|-++ +-.    ..+  ...|+|..|...+|..-+.      +|.. -.++|-|..|.+.+|.
T Consensus       244 lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr  314 (388)
T COG5238         244 LRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNR  314 (388)
T ss_pred             hhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCc
Confidence            677777777655 111    111  1345666666666654322      1211 1455666666666653

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.60  E-value=0.00075  Score=32.22  Aligned_cols=18  Identities=44%  Similarity=0.694  Sum_probs=8.7

Q ss_pred             ccEEEccccCCccCCccc
Q 025516          180 IGQLFLSGTAIEELPSSF  197 (251)
Q Consensus       180 L~~L~l~~n~i~~lp~~~  197 (251)
                      |++|++++|+++.+|+.+
T Consensus         2 L~~Ldls~n~l~~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSF   19 (22)
T ss_dssp             ESEEEETSSEESEEGTTT
T ss_pred             ccEEECCCCcCEeCChhh
Confidence            444555555555444443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.56  E-value=0.00051  Score=55.43  Aligned_cols=177  Identities=19%  Similarity=0.158  Sum_probs=100.2

Q ss_pred             CCccEEEeecccCCCCCc-ccc-ccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccc----ccc-CcCC
Q 025516           62 RKLRFLKFYSSSFNGENR-CKV-SHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIE----QLW-NSVK  133 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~-~~l-~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~----~l~-~~~~  133 (251)
                      +.+..+.+.++.+..... ..+ ....+++.++|..|.+++.  +.+...+ +++.|++|+++.|+++    .+| ...+
T Consensus        45 ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdW--seI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~n  122 (418)
T KOG2982|consen   45 RALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDW--SEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKN  122 (418)
T ss_pred             cchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccH--HHHHHHHhcCccceEeeccCCcCCCccccCcccccc
Confidence            344456666665543111 111 2234455666666655542  1222222 6899999999999885    343 4557


Q ss_pred             ccEEEcCCCcCCccc-cCccccCCCccEEecCCCCCCC---C----------------CCc----------c--ccCCcc
Q 025516          134 LVILNLSGSKSLKSL-PAGIFNLEFLTELDLSGCSKLK---R----------------LPE----------I--SSGNIG  181 (251)
Q Consensus       134 L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~---~----------------~~~----------~--~~~~L~  181 (251)
                      |++|-|.+..+...- ...+..++.+++|.++.|....   +                .|.          .  .++++.
T Consensus       123 l~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~  202 (418)
T KOG2982|consen  123 LRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVN  202 (418)
T ss_pred             eEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccch
Confidence            888888776544432 2334567777888887773211   0                000          0  044555


Q ss_pred             EEEccccCCccCC--cccccCccCCEEeccCCcCCccC--cccccCCCCCCEEeccCCcCCCCC
Q 025516          182 QLFLSGTAIEELP--SSFELLLRLWLLDLSDCKRLKSL--PSSLCKLKSLELLSLRGCSNLQRL  241 (251)
Q Consensus       182 ~L~l~~n~i~~lp--~~~~~l~~L~~L~l~~n~~~~~~--p~~~~~l~~L~~L~l~~n~~~~~~  241 (251)
                      .+.+..|.+....  .....+|.+.-|.++.|++- ++  ..++.++++|.-|.+.++++...+
T Consensus       203 sv~v~e~PlK~~s~ek~se~~p~~~~LnL~~~~id-swasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  203 SVFVCEGPLKTESSEKGSEPFPSLSCLNLGANNID-SWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             heeeecCcccchhhcccCCCCCcchhhhhcccccc-cHHHHHHHcCCchhheeeccCCcccccc
Confidence            5555555544222  12334566667777777743 33  256788899999999988776543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.10  E-value=0.0016  Score=31.09  Aligned_cols=18  Identities=50%  Similarity=0.542  Sum_probs=8.3

Q ss_pred             CCEEeccCCcCCccCcccc
Q 025516          203 LWLLDLSDCKRLKSLPSSL  221 (251)
Q Consensus       203 L~~L~l~~n~~~~~~p~~~  221 (251)
                      |+.|++++|++. .+|..+
T Consensus         2 L~~Ldls~n~l~-~ip~~~   19 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSF   19 (22)
T ss_dssp             ESEEEETSSEES-EEGTTT
T ss_pred             ccEEECCCCcCE-eCChhh
Confidence            445555555443 444433

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=95.68  E-value=0.0071  Score=26.78  Aligned_cols=15  Identities=33%  Similarity=0.412  Sum_probs=5.5

Q ss_pred             CccEEEccccCCccC
Q 025516          179 NIGQLFLSGTAIEEL  193 (251)
Q Consensus       179 ~L~~L~l~~n~i~~l  193 (251)
                      +|+.|++++|+++++
T Consensus         2 ~L~~L~l~~n~L~~l   16 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSL   16 (17)
T ss_dssp             T-SEEEETSS--SSE
T ss_pred             ccCEEECCCCCCCCC
Confidence            344444444444443

...

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.72  E-value=0.0017  Score=52.09  Aligned_cols=87  Identities=23%  Similarity=0.088  Sum_probs=66.2

Q ss_pred             CCCccEEecCCCCCCCCCCc-cccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCc-ccccCCCCCCEEec
Q 025516          155 LEFLTELDLSGCSKLKRLPE-ISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLP-SSLCKLKSLELLSL  232 (251)
Q Consensus       155 l~~L~~L~l~~n~~~~~~~~-~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l  232 (251)
                      +.+.+.|++.+|.+. ++.- ..++.|+.|.|+-|+|+.+.+ +..|++|+.|.|..|.|-..-- ..+.++++|+.|+|
T Consensus        18 l~~vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIssL~p-l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKISSLAP-LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HHHhhhhcccCCCcc-HHHHHHhcccceeEEeeccccccchh-HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            456677888888643 3333 238899999999999998864 6788999999999998643221 45689999999999


Q ss_pred             cCCcCCCCCCh
Q 025516          233 RGCSNLQRLPD  243 (251)
Q Consensus       233 ~~n~~~~~~p~  243 (251)
                      ..|+=.+.-+.
T Consensus        96 ~ENPCc~~ag~  106 (388)
T KOG2123|consen   96 DENPCCGEAGQ  106 (388)
T ss_pred             ccCCcccccch
Confidence            99876665543

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=93.93  E-value=0.02  Score=50.23  Aligned_cols=108  Identities=32%  Similarity=0.381  Sum_probs=50.6

Q ss_pred             cCCccEEEcCCCcCCcc--ccCccccCCCccEEecCCC-CCCCCCC------ccccCCccEEEccccC-Ccc--CCcccc
Q 025516          131 SVKLVILNLSGSKSLKS--LPAGIFNLEFLTELDLSGC-SKLKRLP------EISSGNIGQLFLSGTA-IEE--LPSSFE  198 (251)
Q Consensus       131 ~~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n-~~~~~~~------~~~~~~L~~L~l~~n~-i~~--lp~~~~  198 (251)
                      .+.|+.|.+..|.....  .-......+.|++|+++++ ......+      ...+..|+.|+++++. +++  +.....
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            34566666655543332  1122334556666666652 2222111      0114566666666665 442  111112


Q ss_pred             cCccCCEEeccCCcC-Ccc-CcccccCCCCCCEEeccCCcCC
Q 025516          199 LLLRLWLLDLSDCKR-LKS-LPSSLCKLKSLELLSLRGCSNL  238 (251)
Q Consensus       199 ~l~~L~~L~l~~n~~-~~~-~p~~~~~l~~L~~L~l~~n~~~  238 (251)
                      .+++|+.|.+.+|.. +.. +......+++|++|+++.|..+
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            356666666555552 211 1223345566666666665544

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.31  E-value=0.074  Score=26.19  Aligned_cols=19  Identities=32%  Similarity=0.487  Sum_probs=12.4

Q ss_pred             CCccEEEccccCCccCCcc
Q 025516          178 GNIGQLFLSGTAIEELPSS  196 (251)
Q Consensus       178 ~~L~~L~l~~n~i~~lp~~  196 (251)
                      ++|+.|++++|+++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566677777777766654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.31  E-value=0.074  Score=26.19  Aligned_cols=19  Identities=32%  Similarity=0.487  Sum_probs=12.4

Q ss_pred             CCccEEEccccCCccCCcc
Q 025516          178 GNIGQLFLSGTAIEELPSS  196 (251)
Q Consensus       178 ~~L~~L~l~~n~i~~lp~~  196 (251)
                      ++|+.|++++|+++.+|..
T Consensus         2 ~~L~~L~L~~N~l~~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCCcCCHH
Confidence            4566677777777766654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.86  E-value=0.63  Score=32.68  Aligned_cols=53  Identities=11%  Similarity=0.182  Sum_probs=20.5

Q ss_pred             CccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccC
Q 025516          179 NIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG  234 (251)
Q Consensus       179 ~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  234 (251)
                      +++.+.+.. .+..++. .+..+++|+.+++..+ +...-...+.++ .|+.+.+..
T Consensus        59 ~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~  112 (129)
T PF13306_consen   59 SLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS  112 (129)
T ss_dssp             T-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred             ccccccccc-cccccccccccccccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence            455555543 3333332 3344566666666443 222222344554 666666554

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=92.23  E-value=0.74  Score=32.33  Aligned_cols=93  Identities=17%  Similarity=0.158  Sum_probs=35.4

Q ss_pred             cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc-c--cCCccEEEccccCCccCCc-ccccCccCC
Q 025516          129 WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI-S--SGNIGQLFLSGTAIEELPS-SFELLLRLW  204 (251)
Q Consensus       129 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~  204 (251)
                      ....+|+.+.+..+ ........+.++.+++.+.+..+  ...++.. +  +++|+.+.+..+ +..++. .+.++ .++
T Consensus        32 ~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~~--~~~i~~~~F~~~~~l~~i~~~~~-~~~i~~~~f~~~-~l~  106 (129)
T PF13306_consen   32 SNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPNN--LKSIGDNAFSNCTNLKNIDIPSN-ITEIGSSSFSNC-NLK  106 (129)
T ss_dssp             TT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETST--T-EE-TTTTTT-TTECEEEETTT--BEEHTTTTTT--T--
T ss_pred             cccccccccccccc-ccccceeeeeccccccccccccc--ccccccccccccccccccccCcc-ccEEchhhhcCC-Cce
Confidence            33445666666543 22222333445556677666542  2222221 1  556777776554 454543 34555 777


Q ss_pred             EEeccCCcCCccCcccccCCCCC
Q 025516          205 LLDLSDCKRLKSLPSSLCKLKSL  227 (251)
Q Consensus       205 ~L~l~~n~~~~~~p~~~~~l~~L  227 (251)
                      .+.+.. .+...-...+.++++|
T Consensus       107 ~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  107 EINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             EEE-TT-B-SS----GGG-----
T ss_pred             EEEECC-CccEECCccccccccC
Confidence            777764 3233334556666655

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=92.10  E-value=0.052  Score=46.09  Aligned_cols=108  Identities=25%  Similarity=0.333  Sum_probs=59.8

Q ss_pred             CCccEEEcCCCcCCccc-cCccc-cCCCccEEecCCCCCCCCC--Ccc--ccCCccEEEccccCCc-c-----CCccccc
Q 025516          132 VKLVILNLSGSKSLKSL-PAGIF-NLEFLTELDLSGCSKLKRL--PEI--SSGNIGQLFLSGTAIE-E-----LPSSFEL  199 (251)
Q Consensus       132 ~~L~~L~l~~n~~~~~~-~~~~~-~l~~L~~L~l~~n~~~~~~--~~~--~~~~L~~L~l~~n~i~-~-----lp~~~~~  199 (251)
                      .+|++|.+..|+..+.. ...++ +.+.|+.+++.+|....+.  ...  .++.|+.|.+++|... +     +...-..
T Consensus       320 ~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~  399 (483)
T KOG4341|consen  320 HNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCS  399 (483)
T ss_pred             CceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccc
Confidence            35666666665532211 11222 3455666666666444322  111  1667777777776532 1     2233356


Q ss_pred             CccCCEEeccCCcCCcc-CcccccCCCCCCEEeccCCcCCC
Q 025516          200 LLRLWLLDLSDCKRLKS-LPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       200 l~~L~~L~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      +..|..+.+++++.+.. .-+.+..+++|+.+++.+|+...
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vt  440 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVT  440 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhh
Confidence            67777777877775422 23456777788888887776544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=90.77  E-value=0.086  Score=46.17  Aligned_cols=106  Identities=30%  Similarity=0.298  Sum_probs=59.9

Q ss_pred             cCcCCccEEEcCCC-cCCcccc----CccccCCCccEEecCCCCCCCCCCcc----ccCCccEEEccccC-Cc--cCCcc
Q 025516          129 WNSVKLVILNLSGS-KSLKSLP----AGIFNLEFLTELDLSGCSKLKRLPEI----SSGNIGQLFLSGTA-IE--ELPSS  196 (251)
Q Consensus       129 ~~~~~L~~L~l~~n-~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~L~~L~l~~n~-i~--~lp~~  196 (251)
                      ...+.|+.|++++| ......+    .....+++|+.++++++...++..-.    .+++|+.|.+..|. ++  .+-..
T Consensus       211 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i  290 (482)
T KOG1947|consen  211 LKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSI  290 (482)
T ss_pred             hhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHH
Confidence            45567888887763 2111111    22234677788888877644433311    16678888877666 44  34444


Q ss_pred             cccCccCCEEeccCCcCCcc--CcccccCCCCCCEEeccC
Q 025516          197 FELLLRLWLLDLSDCKRLKS--LPSSLCKLKSLELLSLRG  234 (251)
Q Consensus       197 ~~~l~~L~~L~l~~n~~~~~--~p~~~~~l~~L~~L~l~~  234 (251)
                      ...+++|+.|++++|.....  +.....++++|+.|.+..
T Consensus       291 ~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~  330 (482)
T KOG1947|consen  291 AERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLS  330 (482)
T ss_pred             HHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhh
Confidence            45677788888887775422  223344466666555443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.54  E-value=0.026  Score=43.20  Aligned_cols=59  Identities=24%  Similarity=0.354  Sum_probs=33.5

Q ss_pred             CCceEeecCCCccc-----cccCcCCccEEEcCCCcCCccc-cCcccc-CCCccEEecCCCCCCCC
Q 025516          113 EKLMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSL-PAGIFN-LEFLTELDLSGCSKLKR  171 (251)
Q Consensus       113 ~~L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~-~~~~~~-l~~L~~L~l~~n~~~~~  171 (251)
                      ..++.++.+++.|.     .+.++++++.|.+.+|...+.. -+.+++ .++|+.|++++|+.+++
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~  166 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITD  166 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeech
Confidence            45667777777663     4556667777777776644321 112222 35666677776665443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=90.40  E-value=0.001  Score=58.30  Aligned_cols=111  Identities=25%  Similarity=0.261  Sum_probs=59.1

Q ss_pred             cCcCCccEEEcCCCcCCcc----ccCccc----cCCCccEEecCCCCCCCCCCcc------ccCC-ccEEEccccCCcc-
Q 025516          129 WNSVKLVILNLSGSKSLKS----LPAGIF----NLEFLTELDLSGCSKLKRLPEI------SSGN-IGQLFLSGTAIEE-  192 (251)
Q Consensus       129 ~~~~~L~~L~l~~n~~~~~----~~~~~~----~l~~L~~L~l~~n~~~~~~~~~------~~~~-L~~L~l~~n~i~~-  192 (251)
                      .....++.++++.|.+...    ++..+.    ...++++|.+++|..+...-..      ..+. +.+|+++.|++.+ 
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            3344566666666654321    122222    3556777777777544211100      0222 5557777776652 


Q ss_pred             ----CCcccccC-ccCCEEeccCCcCCcc----CcccccCCCCCCEEeccCCcCCC
Q 025516          193 ----LPSSFELL-LRLWLLDLSDCKRLKS----LPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       193 ----lp~~~~~l-~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                          +.+.+..+ +.+++++++.|++...    +...+..+++++.+.+++|.+..
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence                22333344 5567777777776643    33445666777777777765543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=90.34  E-value=0.037  Score=26.73  Aligned_cols=14  Identities=36%  Similarity=0.228  Sum_probs=6.0

Q ss_pred             ccCCEEeccCCcCC
Q 025516          201 LRLWLLDLSDCKRL  214 (251)
Q Consensus       201 ~~L~~L~l~~n~~~  214 (251)
                      ++|+.|+|++|++.
T Consensus         2 ~~L~~L~l~~n~i~   15 (24)
T PF13516_consen    2 PNLETLDLSNNQIT   15 (24)
T ss_dssp             TT-SEEE-TSSBEH
T ss_pred             CCCCEEEccCCcCC
Confidence            34555555555543

...

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=90.11  E-value=0.22  Score=24.65  Aligned_cols=18  Identities=22%  Similarity=0.427  Sum_probs=13.4

Q ss_pred             CCccEEEccccCCccCCc
Q 025516          178 GNIGQLFLSGTAIEELPS  195 (251)
Q Consensus       178 ~~L~~L~l~~n~i~~lp~  195 (251)
                      ++|++|++++|+++++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            457777888888777775

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=89.59  E-value=0.011  Score=46.31  Aligned_cols=85  Identities=19%  Similarity=0.105  Sum_probs=40.7

Q ss_pred             cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCC
Q 025516          127 QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLW  204 (251)
Q Consensus       127 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~  204 (251)
                      ++..+.....||++.|+ .-.+-..++.++.+..|+++.|.+ ...|...  ...+..+.+..|..+..|.+++..+.++
T Consensus        37 ei~~~kr~tvld~~s~r-~vn~~~n~s~~t~~~rl~~sknq~-~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   37 EIASFKRVTVLDLSSNR-LVNLGKNFSILTRLVRLDLSKNQI-KFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK  114 (326)
T ss_pred             hhhccceeeeehhhhhH-HHhhccchHHHHHHHHHhccHhhH-hhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence            44555566677776665 222333344455555556655432 2222221  2334444444444555555555555555


Q ss_pred             EEeccCCcC
Q 025516          205 LLDLSDCKR  213 (251)
Q Consensus       205 ~L~l~~n~~  213 (251)
                      .++...+.+
T Consensus       115 ~~e~k~~~~  123 (326)
T KOG0473|consen  115 KNEQKKTEF  123 (326)
T ss_pred             hhhhccCcc
Confidence            555544443

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.04  E-value=0.091  Score=40.32  Aligned_cols=81  Identities=21%  Similarity=0.166  Sum_probs=57.4

Q ss_pred             CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCc----cccCCccEEEccccC-CccC-CcccccCccCCEE
Q 025516          133 KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPE----ISSGNIGQLFLSGTA-IEEL-PSSFELLLRLWLL  206 (251)
Q Consensus       133 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n~-i~~l-p~~~~~l~~L~~L  206 (251)
                      .++.+|-+++.+....-..+.+++.++.|.+..|....+-.-    ...++|+.|++++|. |++- -..+.++++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            578888888776666666777888888888888865543211    136899999999874 5532 2245688888888


Q ss_pred             eccCCcC
Q 025516          207 DLSDCKR  213 (251)
Q Consensus       207 ~l~~n~~  213 (251)
                      .+.+-+.
T Consensus       182 ~l~~l~~  188 (221)
T KOG3864|consen  182 HLYDLPY  188 (221)
T ss_pred             HhcCchh
Confidence            8876543

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=88.64  E-value=0.17  Score=43.09  Aligned_cols=109  Identities=26%  Similarity=0.331  Sum_probs=69.8

Q ss_pred             cCCccEEEcCCCcCCcccc-Cccc-cCCCccEEecCCCCCCCCCCccc----cCCccEEEccccCCc---cCCcccccCc
Q 025516          131 SVKLVILNLSGSKSLKSLP-AGIF-NLEFLTELDLSGCSKLKRLPEIS----SGNIGQLFLSGTAIE---ELPSSFELLL  201 (251)
Q Consensus       131 ~~~L~~L~l~~n~~~~~~~-~~~~-~l~~L~~L~l~~n~~~~~~~~~~----~~~L~~L~l~~n~i~---~lp~~~~~l~  201 (251)
                      ...|++|+.++|...+..+ ..++ +..+|+.+.+++|+..++..-..    .+.|+.+++.++...   .+...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            4478888888876543322 2233 46778888888887655443211    678888888877654   2444445788


Q ss_pred             cCCEEeccCCcCCccC-----cccccCCCCCCEEeccCCcCCC
Q 025516          202 RLWLLDLSDCKRLKSL-----PSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       202 ~L~~L~l~~n~~~~~~-----p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      .|+++.+++|......     ...-.++..|..+.+++|+.++
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~  415 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLIT  415 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCch
Confidence            8888888887644322     2223456678888888887665

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=86.81  E-value=0.56  Score=23.22  Aligned_cols=18  Identities=22%  Similarity=0.350  Sum_probs=10.6

Q ss_pred             CCceEeecCCCccccccC
Q 025516          113 EKLMFLEVPNSDIEQLWN  130 (251)
Q Consensus       113 ~~L~~L~l~~n~i~~l~~  130 (251)
                      ++|+.|++++|+|+.+.+
T Consensus         2 ~~L~~L~L~~NkI~~IEn   19 (26)
T smart00365        2 TNLEELDLSQNKIKKIEN   19 (26)
T ss_pred             CccCEEECCCCccceecC
Confidence            456666666666655443

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=86.51  E-value=0.004  Score=54.64  Aligned_cols=161  Identities=23%  Similarity=0.163  Sum_probs=101.1

Q ss_pred             ceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCcccc---------ccCc-CCccEEEcCCCcCCcc----ccCcc
Q 025516           88 LRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQ---------LWNS-VKLVILNLSGSKSLKS----LPAGI  152 (251)
Q Consensus        88 l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~---------l~~~-~~L~~L~l~~n~~~~~----~~~~~  152 (251)
                      +..+.|..|.+.......+.... ...+|..++++.|.+..         +... ..+++|++..|.....    +...+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            33445555555543333333322 35667777777777642         2222 3577788877775543    34445


Q ss_pred             ccCCCccEEecCCCCCCC--------CCCc--cccCCccEEEccccCCcc-----CCcccccCcc-CCEEeccCCcCCcc
Q 025516          153 FNLEFLTELDLSGCSKLK--------RLPE--ISSGNIGQLFLSGTAIEE-----LPSSFELLLR-LWLLDLSDCKRLKS  216 (251)
Q Consensus       153 ~~l~~L~~L~l~~n~~~~--------~~~~--~~~~~L~~L~l~~n~i~~-----lp~~~~~l~~-L~~L~l~~n~~~~~  216 (251)
                      .....++.++++.|.+..        .++.  ....++++|++.+|.++.     +...+...+. +..+++.+|++-..
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~  248 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV  248 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence            556789999999997641        1111  124579999999998872     2223455555 77799999886533


Q ss_pred             ----CcccccCC-CCCCEEeccCCcCCCCCChhhhhc
Q 025516          217 ----LPSSLCKL-KSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       217 ----~p~~~~~l-~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                          ....+..+ ..++.++++.|.+...-...+.+.
T Consensus       249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~  285 (478)
T KOG4308|consen  249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEV  285 (478)
T ss_pred             HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHH
Confidence                33455566 788999999999988777666554

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=81.19  E-value=0.03  Score=43.95  Aligned_cols=83  Identities=18%  Similarity=0.025  Sum_probs=50.7

Q ss_pred             cCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEec
Q 025516          154 NLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSL  232 (251)
Q Consensus       154 ~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l  232 (251)
                      ....-+.||++.|+....-.... ++.+..|+++.|++..+|..++....++.+++..|. ....|..++..+.+++++.
T Consensus        40 ~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   40 SFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccc-hhhCCccccccCCcchhhh
Confidence            34555666776665332211111 456667777777777777777666667777665555 4555677777777777776


Q ss_pred             cCCcC
Q 025516          233 RGCSN  237 (251)
Q Consensus       233 ~~n~~  237 (251)
                      ..+.+
T Consensus       119 k~~~~  123 (326)
T KOG0473|consen  119 KKTEF  123 (326)
T ss_pred             ccCcc
Confidence            66543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	251
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-13
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	6e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-07
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-11
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-08
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-10
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-04
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-08
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	7e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-10
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-08
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-09
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-04
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	8e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-06
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	9e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-06
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-08
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-04
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-08
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-07
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	5e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-04
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	9e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	5e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	4e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	6e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	5e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	8e-06
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	1e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	7e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	3e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	7e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  101 bits (254), Expect = 1e-25
 Identities = 49/175 (28%), Positives = 74/175 (42%), Gaps = 18/175 (10%)

Query: 85  LQDLRFAEVKYLHWHGYPLKSLPSN-HSAEKLMFLEVPNSDIEQLWNSV----KLVILNL 139
           L+D        L     PL   P        L  + +  + + +L +++     L  L L
Sbjct: 75  LEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTL 134

Query: 140 SGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPE-----ISSGNIGQ------LFLSGT 188
           + +  L++LPA I +L  L EL +  C +L  LPE      +SG          L L  T
Sbjct: 135 ARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT 193

Query: 189 AIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD 243
            I  LP+S   L  L  L + +   L +L  ++  L  LE L LRGC+ L+  P 
Sbjct: 194 GIRSLPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPP 247

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 86.2 bits (214), Expect = 5e-20
 Identities = 45/129 (34%), Positives = 56/129 (43%), Gaps = 13/129 (10%)

Query: 126 EQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQ--- 182
            +    V L  L L  +  ++SLPA I NL+ L  L +     L  L       I     
Sbjct: 177 GEHQGLVNLQSLRLEWTG-IRSLPASIANLQNLKSLKIRNS-PLSALGP----AIHHLPK 230

Query: 183 ---LFLSG-TAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL 238
              L L G TA+   P  F     L  L L DC  L +LP  + +L  LE L LRGC NL
Sbjct: 231 LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNL 290

Query: 239 QRLPDRLAS 247
            RLP  +A 
Sbjct: 291 SRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 69.6 bits (171), Expect = 5e-14
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 6/116 (5%)

Query: 130 NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTA 189
           +S     L   GS +L+     +   +     D +      R    +  N      +G A
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSN--NPQIETRTGRA 67

Query: 190 IEELPSSFELL--LRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD 243
           ++      E         L+L     L   P    +L  L+ +++     L  LPD
Sbjct: 68  LKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQHMTIDAAG-LMELPD 121

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 56.1 bits (136), Expect = 2e-09
 Identities = 41/193 (21%), Positives = 73/193 (37%), Gaps = 37/193 (19%)

Query: 55  PNTFAKMRKLRFLKFYSSS---------FNGENRCKVSHLQDLRFAEVKYLHWHGYPLKS 105
           P + A + +LR L   +            + +   +   L +L+      L      ++S
Sbjct: 143 PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQ-----SLRLEWTGIRS 197

Query: 106 LPSN-HSAEKLMFLEVPNSDIEQLWNSV----KLVILNLSGSKSLKSLPAGIFNLEFLTE 160
           LP++  + + L  L++ NS +  L  ++    KL  L+L G  +L++ P        L  
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 161 LDLSGCSKLKRLPEISSGNIGQ------LFLSG-TAIEELPSSFELLLRLWLLDLSDCK- 212
           L L  CS L  LP     +I +      L L G   +  LPS    L    ++ +     
Sbjct: 258 LILKDCSNLLTLPL----DIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

Query: 213 ------RLKSLPS 219
                 R  + P+
Sbjct: 314 AQLDQHRPVARPA 326

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 68.0 bits (166), Expect = 3e-13
 Identities = 31/199 (15%), Positives = 60/199 (30%), Gaps = 9/199 (4%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENR-CKVSHLQDLRFAEVKYLHWHGY 101
           L L+        P+   ++ +L+ L F + S     R      L      E K+     Y
Sbjct: 328 LSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHY 387

Query: 102 PLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSK------SLKSLPAGIFNL 155
               L  +        L+   +   ++    K   ++L  ++       +  +   I  L
Sbjct: 388 KKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRL 447

Query: 156 EFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLK 215
             L  +  +                          E    S+  L  L  ++L +C  + 
Sbjct: 448 TKLQIIYFANS-PFTYDNIAVDWEDANS-DYAKQYENEELSWSNLKDLTDVELYNCPNMT 505

Query: 216 SLPSSLCKLKSLELLSLRG 234
            LP  L  L  L+ L++  
Sbjct: 506 QLPDFLYDLPELQSLNIAC 524

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 61.0 bits (148), Expect = 6e-11
 Identities = 36/222 (16%), Positives = 69/222 (31%), Gaps = 39/222 (17%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG 100
           L  S  K+K IP N      +  +  + F  +    E R     + D +      +    
Sbjct: 624 LGFSHNKLKYIP-NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSY 682

Query: 101 YPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSG-------SKSLKSLPAGIF 153
             ++  P+                 E       +  + LS          SLK       
Sbjct: 683 NEIQKFPT-----------------ELFATGSPISTIILSNNLMTSIPENSLKPKDGNYK 725

Query: 154 NLEFLTELDLSGCSKLKRLP-EISSGNIGQL---FLSGTAIEELPSSFELLLRLWLLDL- 208
           N   LT +DL    KL  L  +  +  +  L    +S       P+      +L    + 
Sbjct: 726 NTYLLTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIR 784

Query: 209 -----SDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRL 245
                   + L+  P+ +    SL  L +    +++++ ++L
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRKVDEKL 825

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 59.1 bits (143), Expect = 3e-10
 Identities = 32/211 (15%), Positives = 70/211 (33%), Gaps = 33/211 (15%)

Query: 55  PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSA-E 113
                ++ KL+ + F +S F  +N        +  +A+           ++   + S  +
Sbjct: 441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQ---------YENEELSWSNLK 491

Query: 114 KLMFLEVPNSDI-----EQLWNSVKLVILNLSG---------SKSLKSLPAGIFNLEFLT 159
            L  +E+ N        + L++  +L  LN++                L         + 
Sbjct: 492 DLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQ 551

Query: 160 ELDLSGCSKLKRLPEISS----GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLK 215
              +     L+  P  +S      +G L      +  L  +F   ++L  L L    +++
Sbjct: 552 IFYMGYN-NLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIE 608

Query: 216 SLPSSLCK-LKSLELLSLRGCSNLQRLPDRL 245
            +P   C     +E L       L+ +P+  
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHN-KLKYIPNIF 638

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 49.5 bits (118), Expect = 4e-07
 Identities = 19/152 (12%), Positives = 40/152 (26%), Gaps = 35/152 (23%)

Query: 127 QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLS 186
            L N+ ++  L+L+G  +   +P  I  L  L  L             +         +S
Sbjct: 318 DLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTH-SETVSGRLFGDEELTPDMS 376

Query: 187 GTAIEELPSSF-----ELLLRLWLLDLSDCK----------------------------R 213
                 +   +     +   RL L DL                                R
Sbjct: 377 EERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR 436

Query: 214 LKSLPSSLCKLKSLELLSLRGCSNLQRLPDRL 245
           +  +  ++ +L  L+++              +
Sbjct: 437 ITFISKAIQRLTKLQIIYFANS-PFTYDNIAV 467

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 5e-06
 Identities = 31/204 (15%), Positives = 63/204 (30%), Gaps = 33/204 (16%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNG--ENRCKVSHLQDLRFAEVKYLHW 98
           + LS  ++++ P     FA    +  +   ++      EN  K           +  +  
Sbjct: 678 VTLSYNEIQKFP--TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735

Query: 99  HGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFL 158
               L SL  +  A  L                  L  +++S +    S P    N   L
Sbjct: 736 RFNKLTSLSDDFRATTL----------------PYLSNMDVSYNC-FSSFPTQPLNSSQL 778

Query: 159 TELDLSGCSKLK--RLPEISSGNIGQ------LFLSGTAIEELPSSFELLLRLWLLDLSD 210
               +      +  R+       I        L +    I ++    +L  +L++LD++D
Sbjct: 779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDE--KLTPQLYILDIAD 836

Query: 211 CKRLKSLPSSLCKLKSLELLSLRG 234
              +    +S+C      +  L  
Sbjct: 837 NPNISIDVTSVCPYIEAGMYVLLY 860

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 64.7 bits (158), Expect = 4e-12
 Identities = 23/213 (10%), Positives = 61/213 (28%), Gaps = 19/213 (8%)

Query: 42  CLDLSKVKEIPLN--------PNTFAKMRKLRFLKFYSSSFNGENRCKV-SHLQDLRFAE 92
                +V  + L         P+   ++ +L  L   S       R      +      E
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 93  VKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLW-------NSVKLVILNLSGSKSL 145
            K      Y    +  +   +    ++   +   Q          ++K   +    +  +
Sbjct: 137 QKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN-I 195

Query: 146 KSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWL 205
             +   +  L  L +  +             +        +    +     ++ L  L  
Sbjct: 196 TFVSKAVMRLTKLRQFYMGNS-PFVAENICEAWENENSEYAQQ-YKTEDLKWDNLKDLTD 253

Query: 206 LDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL 238
           +++ +C  L  LP+ L  L  ++L+++     +
Sbjct: 254 VEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 9e-11
 Identities = 26/205 (12%), Positives = 63/205 (30%), Gaps = 41/205 (20%)

Query: 55  PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEK 114
                ++ KLR     +S F  EN C+    ++                         E 
Sbjct: 199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENS------------------------EY 234

Query: 115 LMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGC-------- 166
               +  +   + L     L  + +    +L  LP  +  L  +  ++++          
Sbjct: 235 AQQYKTEDLKWDNL---KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQL 291

Query: 167 -SKLKRLPEISSG-NIGQLFLSGTAIEEL--PSSFELLLRLWLLDLSDCKRLKSLPSSLC 222
               + L +   G  I  +++    ++     +S + + +L +L+    + L+    +  
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ-LEGKLPAFG 350

Query: 223 KLKSLELLSLRGCSNLQRLPDRLAS 247
               L  L+L     +  +P     
Sbjct: 351 SEIKLASLNLAYN-QITEIPANFCG 374

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 58.5 bits (142), Expect = 4e-10
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 19/135 (14%)

Query: 126 EQLWNSVKLVILNLSG-------SKSLKSLPAGIFNLEFLTELDLSGCSKLKRLP-EISS 177
           E       L  +NL G         SLK       N   LT +DL    KL +L  +  +
Sbjct: 451 ELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFN-KLTKLSDDFRA 509

Query: 178 GNIGQL---FLSGTAIEELPSSFELLLRLWLLDLSDCKRL------KSLPSSLCKLKSLE 228
             +  L    LS  +  + P+       L    + + +        +  P  +    SL 
Sbjct: 510 TTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLT 569

Query: 229 LLSLRGCSNLQRLPD 243
            L +    +++++ +
Sbjct: 570 QLQIGSN-DIRKVNE 583

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 47.0 bits (112), Expect = 3e-06
 Identities = 25/129 (19%), Positives = 44/129 (34%), Gaps = 19/129 (14%)

Query: 127 QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTEL------DLSGCSKLKRLP-EISS-G 178
           +      LV ++LS +      P    N   L         D  G   L+  P  I+   
Sbjct: 508 RATTLPYLVGIDLSYNS-FSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCP 566

Query: 179 NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSL------ 232
           ++ QL +    I ++    ++   + +LD+ D   +    S +C      +  L      
Sbjct: 567 SLTQLQIGSNDIRKVNE--KITPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQ 624

Query: 233 --RGCSNLQ 239
             RGC  L 
Sbjct: 625 DIRGCDALD 633

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 63.2 bits (154), Expect = 9e-12
 Identities = 51/219 (23%), Positives = 81/219 (36%), Gaps = 32/219 (14%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFA---EVKYLHWH 99
           LDL K +   LN + FA    L  L+         N   VS ++   F     ++ L   
Sbjct: 37  LDLGKNRIKTLNQDEFASFPHLEELEL--------NENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 100 GYPLKSLPSN--HSAEKLMFLEVPNSDIEQLWNSV-----KLVILNLSGSKSLKSLPAGI 152
              LK +P         L  L++  + I  L + +      L  L +  +  L  +    
Sbjct: 89  SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDND-LVYISHRA 147

Query: 153 F-NLEFLTELDLSGCSKLKRLPEISSG------NIGQLFLSGTAIEELPS-SFELLLRLW 204
           F  L  L +L L  C     L  I +        +  L L    I  +   SF+ L RL 
Sbjct: 148 FSGLNSLEQLTLEKC----NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203

Query: 205 LLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD 243
           +L++S    L ++  +     +L  LS+  C NL  +P 
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPY 241

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 47.4 bits (113), Expect = 2e-06
 Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 38/215 (17%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAE---VKYLH 97
           L L   ++K IP     F  +  L  L          +  K+  L D  F +   +K L 
Sbjct: 85  LGLRSNRLKLIP--LGVFTGLSNLTKLDI--------SENKIVILLDYMFQDLYNLKSLE 134

Query: 98  WHGYPLKSLPSN--HSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPA 150
                L  +          L  L +   ++  +      +   L++L L    ++ ++  
Sbjct: 135 VGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR-HLNINAIRD 193

Query: 151 GIF-NLEFLTELDLSGCSKLKRLPEISSG--NIGQLFLSGTAIEELPS-SFELLLRLWLL 206
             F  L  L  L++S    L  +        N+  L ++   +  +P  +   L+ L  L
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 207 DLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRL 241
           +LS              + ++E   L     LQ +
Sbjct: 254 NLSYNP-----------ISTIEGSMLHELLRLQEI 277

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 62.4 bits (152), Expect = 1e-11
 Identities = 38/203 (18%), Positives = 77/203 (37%), Gaps = 17/203 (8%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYP 102
           L +S      +  +TF     L+ L+         +  +++H+       + + +     
Sbjct: 146 LSMSNNNLERIEDDTFQATTSLQNLQL--------SSNRLTHVDLSLIPSLFHANVSYNL 197

Query: 103 LKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELD 162
           L +L    + E+L       + +    N  +L IL L  +  L      + N   L E+D
Sbjct: 198 LSTLAIPIAVEELDASHNSINVVRGPVNV-ELTILKLQHNN-LTDTAW-LLNYPGLVEVD 254

Query: 163 LSGCSKLKRLPEISSGNIGQL---FLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPS 219
           LS   +L+++       + +L   ++S   +  L    + +  L +LDLS    L  +  
Sbjct: 255 LSYN-ELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVER 312

Query: 220 SLCKLKSLELLSLRGCSNLQRLP 242
           +  +   LE L L    ++  L 
Sbjct: 313 NQPQFDRLENLYLDHN-SIVTLK 334

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 47.3 bits (113), Expect = 1e-06
 Identities = 32/216 (14%), Positives = 68/216 (31%), Gaps = 29/216 (13%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYP 102
           +         L        R++  L          +    ++   ++      L+     
Sbjct: 50  VTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQ-----KLYMGFNA 104

Query: 103 LKSLPSN--HSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIF-N 154
           ++ LP +   +   L  L +  +D+  L      N+ KL  L++S +  L+ +    F  
Sbjct: 105 IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIEDDTFQA 163

Query: 155 LEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRL 214
              L  L LS   +L  +      ++    +S   +  L       + +  LD S    +
Sbjct: 164 TTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAI----PIAVEELDASHN-SI 217

Query: 215 KSLPSSLC-KLKSLELL--------SLRGCSNLQRL 241
             +   +  +L  L+L          L     L  +
Sbjct: 218 NVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV 253

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 42.3 bits (100), Expect = 7e-05
 Identities = 42/222 (18%), Positives = 77/222 (34%), Gaps = 44/222 (19%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFA---EVKYLH 97
           L+L+  +++EI      FA    ++ L      FN      + +L    F     +  L 
Sbjct: 74  LNLNDLQIEEID--TYAFAYAHTIQKLYM---GFN-----AIRYLPPHVFQNVPLLTVLV 123

Query: 98  WHGYPLKSLPSN--HSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPA 150
                L SLP    H+  KL  L + N+++E++       +  L  L LS ++ L  +  
Sbjct: 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL 182

Query: 151 GIF-----------------NLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEEL 193
            +                      + ELD S    +  +    +  +  L L    + + 
Sbjct: 183 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVVRGPVNVELTILKLQHNNLTDT 241

Query: 194 PSSFELLLRLWLLDLSDCKRLKSLP-SSLCKLKSLELLSLRG 234
                    L  +DLS    L+ +      K++ LE L +  
Sbjct: 242 A-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN 281

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.1 bits (151), Expect = 2e-11
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 15/120 (12%)

Query: 133 KLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSG------NIGQLFL 185
            L IL LS +  ++++  G F  L  L  L+L       RL  I +G       + +L+L
Sbjct: 89  HLEILQLSRNH-IRTIEIGAFNGLANLNTLELFDN----RLTTIPNGAFVYLSKLKELWL 143

Query: 186 SGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPS-SLCKLKSLELLSLRGCSNLQRLPD 243
               IE +PS +F  +  L  LDL + KRL  +   +   L +L  L+L  C NL+ +P+
Sbjct: 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLREIPN 202

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.1 bits (125), Expect = 5e-08
 Identities = 46/209 (22%), Positives = 79/209 (37%), Gaps = 57/209 (27%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG 100
           L+L   ++  IP     F  + KL+                              L    
Sbjct: 117 LELFDNRLTTIP--NGAFVYLSKLK-----------------------------ELWLRN 145

Query: 101 YPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLT 159
            P++S+PS        F  +P+           L  L+L   K L  +  G F  L  L 
Sbjct: 146 NPIESIPSY------AFNRIPS-----------LRRLDLGELKRLSYISEGAFEGLSNLR 188

Query: 160 ELDLSGCSKLKRLPEISS-GNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSL 217
            L+L+ C  L+ +P ++    + +L LSG  +  +   SF+ L+ L  L +    +++ +
Sbjct: 189 YLNLAMC-NLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQS-QIQVI 246

Query: 218 PS-SLCKLKSLELLSLRGCSNLQRLPDRL 245
              +   L+SL  ++L    NL  LP  L
Sbjct: 247 ERNAFDNLQSLVEINLAHN-NLTLLPHDL 274

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 60.1 bits (146), Expect = 1e-10
 Identities = 38/208 (18%), Positives = 77/208 (37%), Gaps = 17/208 (8%)

Query: 42  CLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGY 101
             D+++            K   +  L    + F      +          +   L     
Sbjct: 192 LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYN 251

Query: 102 PLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTE 160
              S    +      F +  N   + L  S  +   +LS    + +L   +F +   L +
Sbjct: 252 MGSSFGHTN------FKDPDNFTFKGLEAS-GVKTCDLS-KSKIFALLKSVFSHFTDLEQ 303

Query: 161 LDLSGCSKLKRLPE---ISSGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKS 216
           L L+  +++ ++ +       ++ +L LS   +  + S  FE L +L +LDLS    +++
Sbjct: 304 LTLAQ-NEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNH-IRA 361

Query: 217 LPS-SLCKLKSLELLSLRGCSNLQRLPD 243
           L   S   L +L+ L+L     L+ +PD
Sbjct: 362 LGDQSFLGLPNLKELALDTN-QLKSVPD 388

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 22/109 (20%), Positives = 32/109 (29%), Gaps = 26/109 (23%)

Query: 130 NSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGT 188
               L  L +        +    F  L  L  L L   ++  +L                
Sbjct: 52  RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLE--------------- 95

Query: 189 AIEELPSSFELLLRLWLLDLSDCKRLKSL---PSSLCKLKSLELLSLRG 234
                  +F  L  L +L L+ C  L       +    L SLE+L LR 
Sbjct: 96  -----TGAFNGLANLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRD 138

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 60.3 bits (146), Expect = 1e-10
 Identities = 36/193 (18%), Positives = 74/193 (38%), Gaps = 17/193 (8%)

Query: 53  LNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSA 112
           +  +TF     L+ L+         +  +++H+       + + +     L +L    + 
Sbjct: 162 IEDDTFQATTSLQNLQL--------SSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 213

Query: 113 EKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRL 172
           E+L       + +    N  +L IL L  +  L      + N   L E+DLS   +L+++
Sbjct: 214 EELDASHNSINVVRGPVNV-ELTILKLQHNN-LTDTAW-LLNYPGLVEVDLSYN-ELEKI 269

Query: 173 PEISSGNIGQL---FLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLEL 229
                  + +L   ++S   +  L    + +  L +LDLS    L  +  +  +   LE 
Sbjct: 270 MYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQFDRLEN 328

Query: 230 LSLRGCSNLQRLP 242
           L L    ++  L 
Sbjct: 329 LYLDHN-SIVTLK 340

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 35/221 (15%), Positives = 75/221 (33%), Gaps = 39/221 (17%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFA---EVKYLH 97
           +      ++++P         R++  L          N  ++  +    FA    ++ L+
Sbjct: 56  VTFKNSTMRKLP--AALLDSFRQVELLNL--------NDLQIEEIDTYAFAYAHTIQKLY 105

Query: 98  WHGYPLKSLPSN--HSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPA 150
                ++ LP +   +   L  L +  +D+  L      N+ KL  L++S +  L+ +  
Sbjct: 106 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNN-LERIED 164

Query: 151 GIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLS 209
             F     L  L LS   +L  +      ++    +S   +  L       + +  LD S
Sbjct: 165 DTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYNLLSTLAI----PIAVEELDAS 219

Query: 210 DCKRLKSLPSSLC-KLKSLELL--------SLRGCSNLQRL 241
               +  +   +  +L  L+L          L     L  +
Sbjct: 220 HN-SINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEV 259

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%)

Query: 53  LNPNTFAKMRKLRFLKFYS---SSFNGENRCKVSHLQDLRFA----------------EV 93
           L P+ F  +  L  L       SS           L  L  +                 +
Sbjct: 114 LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173

Query: 94  KYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF 153
           + L      L  +  +     L    V  + +  L   + +  L+ S +  +  +   + 
Sbjct: 174 QNLQLSSNRLTHVDLS-LIPSLFHANVSYNLLSTLAIPIAVEELDASHNS-INVVRGPVN 231

Query: 154 NLEFLTELDLSGCSKLKRLPEISS-GNIGQLFLSGTAIEELP-SSFELLLRLWLLDLSDC 211
               LT L L     L     + +   + ++ LS   +E++    F  + RL  L +S+ 
Sbjct: 232 --VELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 212 KRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS 247
            RL +L      + +L++L L    +L  +      
Sbjct: 289 -RLVALNLYGQPIPTLKVLDLSHN-HLLHVERNQPQ 322

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 43/222 (19%), Positives = 77/222 (34%), Gaps = 44/222 (19%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHW-- 98
           L+L+  +++EI      FA    ++ L      FN      + +L    F  V  L    
Sbjct: 80  LNLNDLQIEEID--TYAFAYAHTIQKLYM---GFN-----AIRYLPPHVFQNVPLLTVLV 129

Query: 99  -HGYPLKSLPSN--HSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPA 150
                L SLP    H+  KL  L + N+++E++       +  L  L LS ++ L  +  
Sbjct: 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR-LTHVDL 188

Query: 151 GIF-----------------NLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEEL 193
            +                      + ELD S    +  +    +  +  L L    + + 
Sbjct: 189 SLIPSLFHANVSYNLLSTLAIPIAVEELDASHN-SINVVRGPVNVELTILKLQHNNLTDT 247

Query: 194 PSSFELLLRLWLLDLSDCKRLKSLP-SSLCKLKSLELLSLRG 234
                    L  +DLS    L+ +      K++ LE L +  
Sbjct: 248 A-WLLNYPGLVEVDLSYN-ELEKIMYHPFVKMQRLERLYISN 287

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 59.7 bits (145), Expect = 2e-10
 Identities = 40/240 (16%), Positives = 69/240 (28%), Gaps = 16/240 (6%)

Query: 14  SRHAFKQNHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSS 73
               FK      ++E    +G   +      L+   +   +   F  +  +  +     S
Sbjct: 237 ILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVS 296

Query: 74  FNG-ENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV 132
               E+  K    Q L     +   +    L  L      + L       S   +     
Sbjct: 297 IKYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFL------KSLTLTMNKGSISFKKVALP 350

Query: 133 KLVILNLSGSKSLKSLPAGIF---NLEFLTELDLSGCSKLKRLPEISSG--NIGQLFLSG 187
            L  L+LS +  L       +       L  LDLS       +     G   +  L    
Sbjct: 351 SLSYLDLSRNA-LSFSGCCSYSDLGTNSLRHLDLSFN-GAIIMSANFMGLEELQHLDFQH 408

Query: 188 TAIEELP--SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRL 245
           + ++ +   S+F  L +L  LD+S              L SL  L + G S        +
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNV 468

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 28/210 (13%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENR--CKVSHLQDLRFAEVKYLHW 98
           LDLS   +        +      LR L    +     +     +  LQ L F        
Sbjct: 355 LDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST---- 410

Query: 99  HGYPLKSLPSN---HSAEKLMFLEVPNSDIEQLWNSV-----KLVILNLSGSKSLKSLPA 150
               LK +       S EKL++L++  ++ +  ++ +      L  L ++G+    +  +
Sbjct: 411 ----LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLS 466

Query: 151 GIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQL---FLSGTAIEELP-SSFELLLRLWL 205
            +F N   LT LDLS C +L+++       + +L    +S   +  L  S +  L  L  
Sbjct: 467 NVFANTTNLTFLDLSKC-QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 206 LDLSDCKRLKSLP-SSLCKLKSLELLSLRG 234
           LD S   R+++         KSL   +L  
Sbjct: 526 LDCSFN-RIETSKGILQHFPKSLAFFNLTN 554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 36/216 (16%), Positives = 73/216 (33%), Gaps = 45/216 (20%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHW-- 98
           +DLS   +K +     +F+   +L++L          +RC++  ++D  +  + +L    
Sbjct: 37  IDLSFNPLKILK--SYSFSNFSELQWLDL--------SRCEIETIEDKAWHGLHHLSNLI 86

Query: 99  -HGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF-NLE 156
             G P++S                            L  L    +  L SL +     L 
Sbjct: 87  LTGNPIQSFSP-----------------GSFSGLTSLENLVAVET-KLASLESFPIGQLI 128

Query: 157 FLTELDLSGCSKLKRLPEISS----GNIGQLFLSGTAIEELPSS-----FELLLRLWLLD 207
            L +L+++    +      +      N+  + LS   I+ +  +      E       LD
Sbjct: 129 TLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLD 187

Query: 208 LSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD 243
           +S    +  +     +   L  L+LRG  N   +  
Sbjct: 188 MSLNP-IDFIQDQAFQGIKLHELTLRGNFNSSNIMK 222

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 30/117 (25%), Positives = 40/117 (34%), Gaps = 9/117 (7%)

Query: 131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQL---FLSG 187
            V  +       + L  +P  I +      +DLS    LK L   S  N  +L    LS 
Sbjct: 10  VVPNITYQCMD-QKLSKVPDDIPS--STKNIDLSFN-PLKILKSYSFSNFSELQWLDLSR 65

Query: 188 TAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD 243
             IE +   ++  L  L  L L+        P S   L SLE L       L  L  
Sbjct: 66  CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET-KLASLES 121

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 40.0 bits (94), Expect = 4e-04
 Identities = 34/215 (15%), Positives = 66/215 (30%), Gaps = 31/215 (14%)

Query: 53  LNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSA 112
            +P +F+ +  L  L    +         +  L  L+      L+     + S       
Sbjct: 95  FSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLK-----KLNVAHNFIHSCKLPAYF 149

Query: 113 EKL-----------MFLEVPNSDIEQLWN-SVKLVILNLSGSKSLKSLPAGIFNLEFLTE 160
             L               +  +D++ L       + L++S +  +  +    F    L E
Sbjct: 150 SNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNP-IDFIQDQAFQGIKLHE 208

Query: 161 LDLSGCSKLKRLPEISSGNIGQL---------FLSGTAIEEL-PSSFELL--LRLWLLDL 208
           L L G      + +    N+  L         F     +E   PS  E L  + +    L
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 209 SDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD 243
           +              L ++  +SL G  +++ L D
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGV-SIKYLED 302

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 59.2 bits (143), Expect = 2e-10
 Identities = 32/150 (21%), Positives = 55/150 (36%), Gaps = 14/150 (9%)

Query: 90  FAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-KLVILNLSGSKSLKSL 148
            A ++YL      L +LP       L  L+V N+ +  L      L  +N   ++ L  L
Sbjct: 99  PASLEYLDACDNRLSTLPE--LPASLKHLDVDNNQLTMLPELPALLEYINADNNQ-LTML 155

Query: 149 PAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRL----W 204
           P    +LE    L +    +L  LPE    ++  L +S   +E LP+             
Sbjct: 156 PELPTSLE---VLSVRNN-QLTFLPE-LPESLEALDVSTNLLESLPAVPVRNHHSEETEI 210

Query: 205 LLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234
                +  R+  +P ++  L     + L  
Sbjct: 211 FFRCREN-RITHIPENILSLDPTCTIILED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 50.0 bits (119), Expect = 3e-07
 Identities = 25/118 (21%), Positives = 46/118 (38%), Gaps = 11/118 (9%)

Query: 134 LVILNLSGSKSLKSLPAGIFN-LEFLTELDLSGCSK---LKRLPEISSGNIGQLFLSGTA 189
             +   S   ++    A  F+  +   +  L G ++   +  L E       +L L+   
Sbjct: 11  FSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSELQLNRLN 70

Query: 190 IEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS 247
           +  LP    L  ++ +L+++    L SLP     L+ L+    R    L  LP+  AS
Sbjct: 71  LSSLPD--NLPPQITVLEITQN-ALISLPELPASLEYLDACDNR----LSTLPELPAS 121

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 59.0 bits (143), Expect = 2e-10
 Identities = 49/212 (23%), Positives = 84/212 (39%), Gaps = 39/212 (18%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEV---KYLH 97
           L L    +++I      F  +  L  L+ +       N   ++ +    F  +   + L 
Sbjct: 104 LQLGRNSIRQIE--VGAFNGLASLNTLELFD------NW--LTVIPSGAFEYLSKLRELW 153

Query: 98  WHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF-NLE 156
               P++S+PS        F  VP+           L+ L+L   K L+ +  G F  L 
Sbjct: 154 LRNNPIESIPSY------AFNRVPS-----------LMRLDLGELKKLEYISEGAFEGLF 196

Query: 157 FLTELDLSGCSKLKRLPEISS-GNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRL 214
            L  L+L  C  +K +P ++    + +L +SG    E+   SF  L  L  L + +  ++
Sbjct: 197 NLKYLNLGMC-NIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QV 254

Query: 215 KSLPS-SLCKLKSLELLSLRGCSNLQRLPDRL 245
             +   +   L SL  L+L    NL  LP  L
Sbjct: 255 SLIERNAFDGLASLVELNLAHN-NLSSLPHDL 285

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 58.2 bits (141), Expect = 5e-10
 Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 15/120 (12%)

Query: 133 KLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSG------NIGQLFL 185
            L +L L  +  ++ +  G F  L  L  L+L        L  I SG       + +L+L
Sbjct: 100 HLEVLQLGRNS-IRQIEVGAFNGLASLNTLELFDN----WLTVIPSGAFEYLSKLRELWL 154

Query: 186 SGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPS-SLCKLKSLELLSLRGCSNLQRLPD 243
               IE +PS +F  +  L  LDL + K+L+ +   +   L +L+ L+L  C N++ +P+
Sbjct: 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDMPN 213

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 7e-08
 Identities = 29/120 (24%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 134 LVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSG------NIGQLFLS 186
              LNL  +  ++ + A  F +L  L  L L        + +I  G      ++  L L 
Sbjct: 77  TRYLNLMENN-IQMIQADTFRHLHHLEVLQLGRN----SIRQIEVGAFNGLASLNTLELF 131

Query: 187 GTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPS-SLCKLKSLELLSLRGCSNLQRLPDR 244
              +  +PS +FE L +L  L L +   ++S+PS +  ++ SL  L L     L+ + + 
Sbjct: 132 DNWLTVIPSGAFEYLSKLRELWLRNN-PIESIPSYAFNRVPSLMRLDLGELKKLEYISEG 190

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 58.3 bits (141), Expect = 3e-10
 Identities = 27/119 (22%), Positives = 50/119 (42%), Gaps = 8/119 (6%)

Query: 133 KLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPE---ISSGNIGQLFLSGT 188
            L  + +S +  L+ + A +F NL  L E+ +   + L  +      +  N+  L +S T
Sbjct: 55  DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT 114

Query: 189 AIEELPS-SFELLLRLWLLDLSDCKRLKSLPS-SLCKLKS-LELLSLRGCSNLQRLPDR 244
            I+ LP       L+  LLD+ D   + ++   S   L     +L L     +Q + + 
Sbjct: 115 GIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIHNS 172

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 52.5 bits (126), Expect = 3e-08
 Identities = 49/196 (25%), Positives = 81/196 (41%), Gaps = 28/196 (14%)

Query: 53  LNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEV---KYLHWHGYPLKSLPSN 109
           +  + F+ + KL  ++        E    + ++    F  +   +YL      +K LP  
Sbjct: 70  IEADVFSNLPKLHEIRI-------EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122

Query: 110 HSAE--KLMFLEVP-NSDIEQLWN------SVKLVILNLSGSKSLKSLPAGIFNLEFLTE 160
           H     + + L++  N +I  +        S + VIL L+ +  ++ +    FN   L E
Sbjct: 123 HKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNG-IQEIHNSAFNGTQLDE 181

Query: 161 LDLSGCSKLKRLPE---ISSGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKS 216
           L+LS  + L+ LP      +     L +S T I  LPS   E L +L          LK 
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY---NLKK 238

Query: 217 LPSSLCKLKSLELLSL 232
           LP +L KL +L   SL
Sbjct: 239 LP-TLEKLVALMEASL 253

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 44.8 bits (106), Expect = 1e-05
 Identities = 18/112 (16%), Positives = 38/112 (33%), Gaps = 24/112 (21%)

Query: 134 LVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEE 192
            + L    +K L+ +  G F     L ++++S    L+ +                    
Sbjct: 32  AIELRFVLTK-LRVIQKGAFSGFGDLEKIEISQNDVLEVIE------------------- 71

Query: 193 LPSSFELLLRLWLLDLSDCKRLKSLPSSLCK-LKSLELLSLRGCSNLQRLPD 243
               F  L +L  + +     L  +     + L +L+ L +     ++ LPD
Sbjct: 72  -ADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-GIKHLPD 121

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 14/89 (15%), Positives = 30/89 (33%), Gaps = 3/89 (3%)

Query: 159 TELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSL 217
                   SK+  +P     N  +L    T +  +   +F     L  +++S    L+ +
Sbjct: 12  RVFLCQE-SKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 70

Query: 218 PSS-LCKLKSLELLSLRGCSNLQRLPDRL 245
            +     L  L  + +   +NL  +    
Sbjct: 71  EADVFSNLPKLHEIRIEKANNLLYINPEA 99

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 58.2 bits (141), Expect = 5e-10
 Identities = 40/199 (20%), Positives = 70/199 (35%), Gaps = 24/199 (12%)

Query: 58  FAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMF 117
           F+     + L+  +  F             L+   +K L +      +  S      L F
Sbjct: 300 FSYNFGWQHLELVNCKFG--------QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351

Query: 118 L-------EVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLK 170
           L              +  + +  L  L+LS    + ++ +    LE L  LD      LK
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSF-NGVITMSSNFLGLEQLEHLDFQHS-NLK 409

Query: 171 RLPEISS----GNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDCK-RLKSLPSSLCKL 224
           ++ E S      N+  L +S T      +  F  L  L +L ++    +   LP    +L
Sbjct: 410 QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTEL 469

Query: 225 KSLELLSLRGCSNLQRLPD 243
           ++L  L L  C  L++L  
Sbjct: 470 RNLTFLDLSQC-QLEQLSP 487

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 43/210 (20%), Positives = 84/210 (40%), Gaps = 30/210 (14%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFL-----KFYSSSFNGENRCKVSHLQDLRFAEVKYLH 97
           L  +  K    N  +   +  L FL              ++    + L+ L  +      
Sbjct: 330 LTFTSNK--GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG--- 384

Query: 98  WHGYPLKSLPSN-HSAEKLMFLEVPNSDIEQLW------NSVKLVILNLSGSKSLKSLPA 150
                + ++ SN    E+L  L+  +S+++Q+       +   L+ L++S +   +    
Sbjct: 385 -----VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH-TRVAFN 438

Query: 151 GIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQLF---LSGTAIEELP-SSFELLLRLWL 205
           GIF  L  L  L ++G S  +         +  L    LS   +E+L  ++F  L  L +
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQV 498

Query: 206 LDLSDCKRLKSLPSS-LCKLKSLELLSLRG 234
           L+++   +LKS+P     +L SL+ + L  
Sbjct: 499 LNMASN-QLKSVPDGIFDRLTSLQKIWLHT 527

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 6e-06
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 130 NSVKLVILNLSGSKSLKSLPAGIF--NLEFLTELDLSGCSKLKRLPEISSGNIGQ---LF 184
              +L  L+   S  LK +       +L  L  LD+S     +         +     L 
Sbjct: 394 GLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLK 451

Query: 185 LSGTAIEE--LPSSFELLLRLWLLDLSDCKRLKSLP-SSLCKLKSLELLSLRGCSNLQRL 241
           ++G + +E  LP  F  L  L  LDLS C+ L+ L  ++   L SL++L++     L+ +
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFNSLSSLQVLNMASN-QLKSV 509

Query: 242 PD 243
           PD
Sbjct: 510 PD 511

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 7e-06
 Identities = 29/107 (27%), Positives = 51/107 (47%), Gaps = 9/107 (8%)

Query: 134 LVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPE---ISSGNIGQLFLSGTA 189
              L+LS +  L+ L +  F +   L  LDLS C +++ + +    S  ++  L L+G  
Sbjct: 30  TKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 190 IEELPS-SFELLLRLWLLDLSDCKRLKSLPS-SLCKLKSLELLSLRG 234
           I+ L   +F  L  L  L   +   L SL +  +  LK+L+ L++  
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAH 133

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 26/147 (17%), Positives = 54/147 (36%), Gaps = 26/147 (17%)

Query: 119 EVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPE--- 174
            + +           L +L+LS  + ++++  G + +L  L+ L L+G + ++ L     
Sbjct: 42  HLGSYSFFSFPE---LQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTG-NPIQSLALGAF 96

Query: 175 ISSGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSL--PSSLCKLKSLELLS 231
               ++ +L    T +  L +     L  L  L+++    ++S   P     L +LE L 
Sbjct: 97  SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLD 155

Query: 232 LRGC-------------SNLQRLPDRL 245
           L                  +  L   L
Sbjct: 156 LSSNKIQSIYCTDLRVLHQMPLLNLSL 182

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 38/208 (18%), Positives = 68/208 (32%), Gaps = 34/208 (16%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYP 102
           L L+      L    F+ +  L+ L    ++        + HL+ L+      L+     
Sbjct: 81  LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLK-----ELNVAHNL 135

Query: 103 LKSLPSNHSAEKLMFLE-----------VPNSDIEQLWN-SVKLVILNLSGSKSLKSLPA 150
           ++S         L  LE           +  +D+  L    +  + L+LS +  +  +  
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQP 194

Query: 151 GIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSD 210
           G F    L +L L               N   L +  T I+ L      + RL L +  +
Sbjct: 195 GAFKEIRLHKLTL-------------RNNFDSLNVMKTCIQGLAGLE--VHRLVLGEFRN 239

Query: 211 CKRLKSLPSS-LCKLKSLELLSLRGCSN 237
              L+    S L  L +L +   R    
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYL 267

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 57.6 bits (139), Expect = 9e-10
 Identities = 39/179 (21%), Positives = 64/179 (35%), Gaps = 44/179 (24%)

Query: 103 LKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-KLVILNLSGSKSLKSLPAGIFNLEFLTEL 161
           L +LP       +  L +P++++  L     +L  L +SG++ L SLP     L  L+  
Sbjct: 52  LTTLPDC-LPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQ-LTSLPVLPPGLLELSIF 109

Query: 162 DLSGCS----------------KLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWL 205
                                 +L  LP      + +L +S   +  LP+    L +LW 
Sbjct: 110 SNPLTHLPALPSGLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPALPSELCKLWA 168

Query: 206 -----------------LDLSDCKRLKSLPSSLCKLKSLELLSLR------GCSNLQRL 241
                            L +SD  +L SLP+   +L  L   + R        S L+ L
Sbjct: 169 YNNQLTSLPMLPSGLQELSVSDN-QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKEL 226

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.9 bits (132), Expect = 6e-09
 Identities = 39/146 (26%), Positives = 59/146 (40%), Gaps = 20/146 (13%)

Query: 103 LKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-KLVILNLSGSKSLKSLPAGIFNLEFLTEL 161
           L +LPS      L  L +  + +  L      L  L++S ++ L SLPA    L    +L
Sbjct: 116 LPALPSG-----LCKLWIFGNQLTSLPVLPPGLQELSVSDNQ-LASLPALPSEL---CKL 166

Query: 162 DLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSL 221
                 +L  LP      + +L +S   +  LP+    L +LW  +     RL SLP+  
Sbjct: 167 WAYNN-QLTSLPM-LPSGLQELSVSDNQLASLPTLPSELYKLWAYNN----RLTSLPALP 220

Query: 222 CKLKSLELLSLRGCSNLQRLPDRLAS 247
             LK L +   R    L  LP   + 
Sbjct: 221 SGLKELIVSGNR----LTSLPVLPSE 242

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 54.5 bits (131), Expect = 9e-09
 Identities = 43/155 (27%), Positives = 62/155 (40%), Gaps = 17/155 (10%)

Query: 94  KYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-KLVILNLSGSKSLKSLPAGI 152
           + L      L SLP+     +L  L   N+ +  L      L  L++S ++ L SLP   
Sbjct: 144 QELSVSDNQLASLPA--LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQ-LASLPTLP 200

Query: 153 FNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCK 212
             L  L   +     +L  LP      + +L +SG  +  LP    L   L  L +S   
Sbjct: 201 SELYKLWAYNN----RLTSLPA-LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGN- 251

Query: 213 RLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS 247
           RL SLP     L SL +      + L RLP+ L  
Sbjct: 252 RLTSLPMLPSGLLSLSVYR----NQLTRLPESLIH 282

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.7 bits (129), Expect = 2e-08
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 6/90 (6%)

Query: 158 LTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSL 217
              L++     L  LP+    +I  L +    +  LP+    L     L++S   +L SL
Sbjct: 42  NAVLNVGES-GLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRT---LEVSGN-QLTSL 96

Query: 218 PSSLCKLKSLELLSLRGCSNLQRLPDRLAS 247
           P     L  L + S    ++L  LP  L  
Sbjct: 97  PVLPPGLLELSIFSNPL-THLPALPSGLCK 125

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 46/212 (21%), Positives = 67/212 (31%), Gaps = 15/212 (7%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRF--LKFYSSSFNGENRCKVSHLQDLRFAEVKYLHW 98
           L+L+   +  I       A  + L F   +     F G     +  L    F ++     
Sbjct: 184 LNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDI 243

Query: 99  HGYPLKSLPSNHSAE-KLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEF 157
                + L         L      N           L  L+L+ +  L  LP+G+  L  
Sbjct: 244 SPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELPSGLVGLST 302

Query: 158 LTELDLSGCSKLKRLPEISSGNIGQL---FLSGTAI--EELPSSFELLLRLWLLDLSDCK 212
           L +L LS   K + L +IS+ N   L    + G     E      E L  L  LDLS   
Sbjct: 303 LKKLVLSAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 213 --RLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242
                     L  L  L+ L+L        L 
Sbjct: 362 IETSDCCNLQLRNLSHLQSLNLSYN-EPLSLK 392

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 33/216 (15%), Positives = 71/216 (32%), Gaps = 21/216 (9%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYP 102
           L L       +         KL+ L F +++ +  ++     +  L+ A    L+ +G  
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK---EDMSSLQQATNLSLNLNGND 190

Query: 103 LKSLPS-----------NHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAG 151
           +  +             N    + + +         + +       ++       ++  G
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 152 IFNLEFLTELDLSGCSKLKRLPEISSGNIGQL---FLSGTAIEELPSSFELLLRLWLLDL 208
           +  +  +  ++L        +   +      L    L+ T + ELPS    L  L  L L
Sbjct: 251 LCEMS-VESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVL 308

Query: 209 SDCKRLKSLPS-SLCKLKSLELLSLRGCSNLQRLPD 243
           S   + ++L   S     SL  LS++G +    L  
Sbjct: 309 SAN-KFENLCQISASNFPSLTHLSIKGNTKRLELGT 343

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 1e-05
 Identities = 21/123 (17%), Positives = 39/123 (31%), Gaps = 10/123 (8%)

Query: 119 EVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISS 177
            + N+   +L N   L  L+L+  + +  +    F +   L  L L+    L  + E + 
Sbjct: 47  TIQNTTFSRLIN---LTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTAN-PLIFMAETAL 101

Query: 178 GNIG---QLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLR 233
                   LF   T I  +          L  L L                + L++L  +
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 234 GCS 236
             +
Sbjct: 162 NNA 164

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 3e-05
 Identities = 43/211 (20%), Positives = 67/211 (31%), Gaps = 28/211 (13%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHW-- 98
           LDLS   ++           +  L+ L     S+N     +   L+   F E   L    
Sbjct: 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNL---SYN-----EPLSLKTEAFKECPQLELLD 406

Query: 99  -HGYPLKSLPSNHSAEKLMFLEV--------PNSDIEQLWNSVKLVILNLSG---SKSLK 146
                LK   +    + L  L+V          S  +       L  LNL G    K   
Sbjct: 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNI 466

Query: 147 SLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQL---FLSGTAIEELPSSFELLLRL 203
                +  L  L  L LS C  L  + + +  ++  +    LS   +          L+ 
Sbjct: 467 QKTNSLQTLGRLEILVLSFC-DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKG 525

Query: 204 WLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234
             L+L+       LPS L  L     ++LR 
Sbjct: 526 IYLNLASNHISIILPSLLPILSQQRTINLRQ 556

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 40/206 (19%), Positives = 68/206 (33%), Gaps = 40/206 (19%)

Query: 43  LDLSK-VKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFA---EVKYLHW 98
           L +    K + L       +  LR L          +  + S   +L+      ++ L+ 
Sbjct: 330 LSIKGNTKRLELGTGCLENLENLRELDL------SHDDIETSDCCNLQLRNLSHLQSLNL 383

Query: 99  HGYPLKSLPSN--HSAEKLMFLEVPNSDIEQLW------NSVKLVILNLSGSKSLKSLPA 150
                 SL +       +L  L++  + ++         N   L +LNLS S  L     
Sbjct: 384 SYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL-LDISSE 442

Query: 151 GIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLS 209
            +F  L  L  L+L G                          +  +S + L RL +L LS
Sbjct: 443 QLFDGLPALQHLNLQGNH-----------------FPKG-NIQKTNSLQTLGRLEILVLS 484

Query: 210 DCKRLKSLPS-SLCKLKSLELLSLRG 234
            C  L S+   +   LK +  + L  
Sbjct: 485 FC-DLSSIDQHAFTSLKMMNHVDLSH 509

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 35/214 (16%), Positives = 62/214 (28%), Gaps = 42/214 (19%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENR---CKVSHLQDLRFAEVKYLH 97
           LDL+  ++  I    +TF    +L  L   ++               L+ L F +     
Sbjct: 62  LDLTRCQIYWIH--EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG--- 116

Query: 98  WHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF-NLE 156
                + S+                     L N   L  L L  +  + S+        E
Sbjct: 117 -----ISSIDFIP-----------------LHNQKTLESLYLGSNH-ISSIKLPKGFPTE 153

Query: 157 FLTELDLSGCSKLKRLPEISSGNIGQ-----LFLSGTAIEELPSSFELLLRLWLLDLSDC 211
            L  LD      +  L +    ++ Q     L L+G  I  +            L+    
Sbjct: 154 KLKVLDFQNN-AIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 212 KRLKSLPSSL--CKLKSLELLSLRGCSNLQRLPD 243
           + L  +   L    ++SL L +     +    P 
Sbjct: 213 QNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPA 246

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 15/87 (17%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 160 ELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLP 218
             +      L  +P     +   L  S   +  +  ++F  L+ L  LDL+ C+      
Sbjct: 16  TYNCENLG-LNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHE 74

Query: 219 SSLCKLKSLELLSLRGCSNLQRLPDRL 245
            +      L+ L L     L  + +  
Sbjct: 75  DTFQSQHRLDTLVLTANP-LIFMAETA 100

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 53.5 bits (129), Expect = 8e-09
 Identities = 19/118 (16%), Positives = 49/118 (41%), Gaps = 7/118 (5%)

Query: 133 KLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQL---FLSGT 188
            +  + +S   +L+ L +  F NL  +T +++     L  +   +   +  L    +  T
Sbjct: 56  NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT 115

Query: 189 AIEELP--SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSN-LQRLPD 243
            ++  P  +        ++L+++D   + S+P +  +    E L+L+  +N    +  
Sbjct: 116 GLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQG 173

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 21/112 (18%), Positives = 43/112 (38%), Gaps = 24/112 (21%)

Query: 134 LVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEE 192
              L L  +  L+++P+  F NL  ++ + +S    L++L                    
Sbjct: 33  TQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLE------------------- 72

Query: 193 LPSSFELLLRLWLLDLSDCKRLKSLPSSLCK-LKSLELLSLRGCSNLQRLPD 243
              SF  L ++  +++ + + L  +     K L  L+ L +     L+  PD
Sbjct: 73  -SHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNT-GLKMFPD 122

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 45.8 bits (109), Expect = 4e-06
 Identities = 18/121 (14%), Positives = 39/121 (32%), Gaps = 10/121 (8%)

Query: 133 KLVILNLSGSKSLKSLPAGIF--NLEFLTELDLSGCSKLKRLPEIS----SGNIGQLFLS 186
            L  L +  +  LK  P      + +    L+++    +  +P  +          L L 
Sbjct: 106 LLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLY 164

Query: 187 GTAIEELPSSFELLLRLWLLDLSDCKRLKSLPS-SLCKLKS-LELLSLRGCSNLQRLPDR 244
                 +        +L  + L+  K L  +   +   + S   LL +    ++  LP +
Sbjct: 165 NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSK 223

Query: 245 L 245
            
Sbjct: 224 G 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 30/177 (16%), Positives = 58/177 (32%), Gaps = 36/177 (20%)

Query: 43  LDLSKVKEIP-LNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAE----VKYLH 97
           +++   + +  ++P+   ++  L+FL  +           +    DL           L 
Sbjct: 85  IEIRNTRNLTYIDPDALKELPLLKFLGIF--------NTGLKMFPDLTKVYSTDIFFILE 136

Query: 98  WHGYP-LKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLE 156
               P + S+P N       F  + N            + L L  +    S+    FN  
Sbjct: 137 ITDNPYMTSIPVN------AFQGLCNE----------TLTLKLYNNG-FTSVQGYAFNGT 179

Query: 157 FLTELDLSGCSKLKRLPEIS----SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDL 208
            L  + L+    L  + + +          L +S T++  LPS   E L  L   + 
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 54.3 bits (130), Expect = 9e-09
 Identities = 39/215 (18%), Positives = 77/215 (35%), Gaps = 23/215 (10%)

Query: 36  EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDL-RFAEVK 94
            +     L    V +      T  ++  +  +   +          +  +Q +     V 
Sbjct: 21  AETIKDNLKKKSVTDAV----TQNELNSIDQIIANN--------SDIKSVQGIQYLPNVT 68

Query: 95  YLHWHGYPLKSLPSNHSAEKLMFLEVPN---SDIEQLWNSVKLVILNLSGSKSLKSLPAG 151
            L  +G  L  +    + + L +L +      D+  L +  KL  L+L  +  +  +  G
Sbjct: 69  KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNG-ISDIN-G 126

Query: 152 IFNLEFLTELDLSGCSKLKRLPEISS-GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSD 210
           + +L  L  L L    K+  +  +S    +  L L    I ++      L +L  L LS 
Sbjct: 127 LVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 184

Query: 211 CKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRL 245
              +  L  +L  LK+L++L L     L +  +  
Sbjct: 185 NH-ISDL-RALAGLKNLDVLELFSQECLNKPINHQ 217

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 9e-09
 Identities = 40/205 (19%), Positives = 73/205 (35%), Gaps = 17/205 (8%)

Query: 43  LDLSKVK-EIPLNPNTFAKMRKLRFLKFYSSSFNGE---NRCKVSHLQDLRFAEVKYLHW 98
           L++S    + P   +   K+  L  L   ++S +G             +L+   +     
Sbjct: 131 LNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKI 190

Query: 99  HGY-PLKSLPSNHSAEKLMFLEVPN----SDIEQLWNSVKLVILNLSGSKSLKSLPAGIF 153
            G   +    +      L FL+V +    + I  L +   L  L++SG+K        I 
Sbjct: 191 SGDVDVSRCVN------LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAIS 244

Query: 154 NLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIE-ELPSSFELLLR-LWLLDLSDC 211
               L  L++S    +  +P +   ++  L L+      E+P         L  LDLS  
Sbjct: 245 TCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGN 304

Query: 212 KRLKSLPSSLCKLKSLELLSLRGCS 236
               ++P        LE L+L   +
Sbjct: 305 HFYGAVPPFFGSCSLLESLALSSNN 329

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 24/116 (20%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 129 WNSVKLVILNLSG---SKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISS-GNIGQLF 184
               K+  ++LS    +    ++ + + +L  L  L LS       +       ++  L 
Sbjct: 47  CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLD 106

Query: 185 LSGTAIE-ELPSSFEL--LLRLWLLDLSDCKRLKSLP-SSLCKLKSLELLSLRGCS 236
           LS  ++   + +   L     L  L++S          S   KL SLE+L L   S
Sbjct: 107 LSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANS 162

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.2 bits (113), Expect = 2e-06
 Identities = 33/141 (23%), Positives = 55/141 (39%), Gaps = 38/141 (26%)

Query: 128 LWNSVKLVILNLSGSKSLK-SLPAGIFNLEFLTELDLSG-------------CSKLKRLP 173
           L N  +LV L+LS +  L  ++P+ + +L  L +L L                  L+ L 
Sbjct: 414 LSNCSELVSLHLSFN-YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETL- 471

Query: 174 EISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLR 233
            I   N     L+G    E+PS       L  + LS+ +    +P  + +L++L +L L 
Sbjct: 472 -ILDFN----DLTG----EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLS 522

Query: 234 G-------------CSNLQRL 241
                         C +L  L
Sbjct: 523 NNSFSGNIPAELGDCRSLIWL 543

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 18/191 (9%)

Query: 58  FAKMRKLRFLKFYSSSFNGE--NRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL 115
           F     L  L    +S +G       +     L+F  V           S     +   L
Sbjct: 96  FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLN--SL 153

Query: 116 MFLEVPN--------SDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCS 167
             L++                    +L  L +SG+K    +   +     L  LD+S  +
Sbjct: 154 EVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNN 211

Query: 168 KLKRLPEISS-GNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLK 225
               +P +     +  L +SG  +  +   +      L LL++S  + +  +P     LK
Sbjct: 212 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLK 269

Query: 226 SLELLSLRGCS 236
           SL+ LSL    
Sbjct: 270 SLQYLSLAENK 280

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 11/124 (8%)

Query: 122 NSDIEQLWNSVKLVILNLSGSKSLKSLPAG--IFNLEFLTELDLSGCSKLKRLP---EIS 176
           N  +     S  L  L+LS +     +     + +   L  L++S  +          + 
Sbjct: 90  NGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLK 149

Query: 177 SGNIGQLFLSGTAIE-ELPSSFEL---LLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSL 232
             ++  L LS  +I       + L      L  L +S  K    +   + +  +LE L +
Sbjct: 150 LNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDV 207

Query: 233 RGCS 236
              +
Sbjct: 208 SSNN 211

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.9 bits (107), Expect = 1e-05
 Identities = 25/120 (20%), Positives = 43/120 (35%), Gaps = 23/120 (19%)

Query: 128 LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSG-------------CSKLKRLPE 174
           L +  KL  L L  +     +P  +  ++ L  L L               C+ L  +  
Sbjct: 438 LGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI-- 495

Query: 175 ISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234
               ++    L+G     +P     L  L +L LS+     ++P+ L   +SL  L L  
Sbjct: 496 ----SLSNNRLTGE----IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 43.0 bits (102), Expect = 5e-05
 Identities = 43/215 (20%), Positives = 75/215 (34%), Gaps = 58/215 (26%)

Query: 55  PNTFAKMRKLRFLKFYSSSFNGE-NRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHS-- 111
           P  F     L  L   S++F+GE     +  ++ L+  ++ +  + G     LP + +  
Sbjct: 311 PPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG----ELPESLTNL 366

Query: 112 AEKLMFL---------EVPNSDIEQLWNSVKLVIL---NLSGSKSLKSLPAGIFNLEFLT 159
           +  L+ L          +  +  +   N+++ + L     +G      +P  + N   L 
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-----KIPPTLSNCSELV 421

Query: 160 ELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPS 219
            L LS                    LSG     +PSS   L +L  L L        +P 
Sbjct: 422 SLHLSFNY-----------------LSG----TIPSSLGSLSKLRDLKLWLNMLEGEIPQ 460

Query: 220 SLCKLKSLELLSLRG-------------CSNLQRL 241
            L  +K+LE L L               C+NL  +
Sbjct: 461 ELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 40.7 bits (96), Expect = 4e-04
 Identities = 36/215 (16%), Positives = 59/215 (27%), Gaps = 47/215 (21%)

Query: 55  PNTFAKMRKLRFLKFYSSSFNGE---NRCKVSHLQDLRFAE-----------------VK 94
           P    ++  L  LK  ++SF+G           L  L                     + 
Sbjct: 507 PKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA 566

Query: 95  YLHWHGYPLKSLPSNHSAEKLMFLEVPNSDI----EQLWNSVKLVILNLSGSKSLKSLPA 150
                G     + ++   ++               EQL         N++          
Sbjct: 567 ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSP 626

Query: 151 GIFNLEFLTELDLSG-------------CSKLKRLPEISSGNIGQLFLSGTAIEELPSSF 197
              N   +  LD+S                 L  L      N+G   +SG     +P   
Sbjct: 627 TFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFIL------NLGHNDISG----SIPDEV 676

Query: 198 ELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSL 232
             L  L +LDLS  K    +P ++  L  L  + L
Sbjct: 677 GDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDL 711

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 128 LWNSVKLVILNLSGSKSLKSLPAGIF--NLEFLTELDLSGCSKLKRLP-EISSGNIGQLF 184
                ++  L+L  ++ + ++       + + L  L+L     +  +  ++    +  L 
Sbjct: 140 EGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLD 197

Query: 185 LSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234
           LS   +  +   F+    +  + L + K L  +  +L   ++LE   LRG
Sbjct: 198 LSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 40/215 (18%), Positives = 72/215 (33%), Gaps = 28/215 (13%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLR-FAEVKYLHWH 99
           LDLS   + +I       A   KL  L     S N      +    DL   + ++ L  +
Sbjct: 39  LDLSGNPLSQIS--AADLAPFTKLELLNL---SSN-----VLYETLDLESLSTLRTLDLN 88

Query: 100 GYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV--KLVILNLSGSKSLKSLPAGIF-NLE 156
              ++ L    S   +  L   N++I ++  S       + L+ +K +  L         
Sbjct: 89  NNYVQELLVGPS---IETLHAANNNISRVSCSRGQGKKNIYLANNK-ITMLRDLDEGCRS 144

Query: 157 FLTELDLSGCSKLKRLPEISS----GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCK 212
            +  LDL    ++  +           +  L L    I ++     +  +L  LDLS   
Sbjct: 145 RVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSN- 201

Query: 213 RLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS 247
           +L  +         +  +SLR    L  +   L  
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRF 235

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 2e-05
 Identities = 26/123 (21%), Positives = 46/123 (37%), Gaps = 16/123 (13%)

Query: 130 NSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQL---FL 185
           N  +  I  ++ S  LK   A +  +   + ELDLSG   L ++         +L    L
Sbjct: 8   NGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLELLNL 65

Query: 186 SGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLEL-------LSLRGCSNL 238
           S   + E     E L  L  LDL++   ++ L      +++L         +S       
Sbjct: 66  SSNVLYETL-DLESLSTLRTLDLNNN-YVQELL-VGPSIETLHAANNNISRVSCSRGQGK 122

Query: 239 QRL 241
           + +
Sbjct: 123 KNI 125

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 53.6 bits (129), Expect = 2e-08
 Identities = 30/207 (14%), Positives = 67/207 (32%), Gaps = 30/207 (14%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHW---- 98
           L + +          ++ + K++ +             KV  +       +K L +    
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVE--------NSKVFLVPCSFSQHLKSLEFLDLS 342

Query: 99  ----HGYPLKSLPSNHSAEKLMFLEVPNSDIEQLW-------NSVKLVILNLSGSKSLKS 147
                   LK+     +   L  L +  + +  +            L  L++S +     
Sbjct: 343 ENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT-FHP 401

Query: 148 LPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLD 207
           +P      E +  L+LS    ++ +       +  L +S   ++        L RL  L 
Sbjct: 402 MPDSCQWPEKMRFLNLSST-GIRVVKTCIPQTLEVLDVSNNNLDSFSLF---LPRLQELY 457

Query: 208 LSDCKRLKSLPSSLCKLKSLELLSLRG 234
           +S   +LK+LP +      L ++ +  
Sbjct: 458 ISRN-KLKTLPDAS-LFPVLLVMKISR 482

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 22/115 (19%), Positives = 37/115 (32%), Gaps = 7/115 (6%)

Query: 128 LWNSVKLVILNLSGSKSLKSLPAGIF--NLEFLTELDLSGCSKLKRLPEISSGNIGQL-- 183
                 L  LNL G+   ++L       NL  L  L +        +  I    +  L  
Sbjct: 94  FGPLSSLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNE 152

Query: 184 -FLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCS 236
             +   ++    S S + +  +  L L   +    L      L S+  L LR  +
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTN 207

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 39.7 bits (93), Expect = 5e-04
 Identities = 25/201 (12%), Positives = 60/201 (29%), Gaps = 26/201 (12%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYP 102
           L++  +        +   +R +  L  + S            L  +R+ E++  +   + 
Sbjct: 153 LEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQ 212

Query: 103 LKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELD 162
              LP +  +  +  L                V+ + S    L  L   I  L  +   D
Sbjct: 213 FSPLPVDEVSSPMKKLAFRG-----------SVLTDES-FNELLKLLRYILELSEVEFDD 260

Query: 163 LSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLC 222
            +  + L       S  + +L                 + +  L +        L +   
Sbjct: 261 CT-LNGLGDFNPSESDVVSEL------------GKVETVTIRRLHIPQFYLFYDLSTVYS 307

Query: 223 KLKSLELLSLRGCSNLQRLPD 243
            L+ ++ +++   S +  +P 
Sbjct: 308 LLEKVKRITVEN-SKVFLVPC 327

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 52.7 bits (127), Expect = 2e-08
 Identities = 39/171 (22%), Positives = 67/171 (39%), Gaps = 22/171 (12%)

Query: 90  FAEVKYLHWHGYPLKSLPSN--HSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGS 142
            A  + +  HG  +  +P+    +   L  L + ++ + ++          L  L+LS +
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 143 KSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSG------NIGQLFLSGTAIEELPS 195
             L+S+    F  L  L  L L  C     L E+  G       +  L+L   A++ LP 
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRC----GLQELGPGLFRGLAALQYLYLQDNALQALPD 146

Query: 196 -SFELLLRLWLLDLSDCKRLKSLPS-SLCKLKSLELLSLRGCSNLQRLPDR 244
            +F  L  L  L L    R+ S+P  +   L SL+ L L     +  +   
Sbjct: 147 DTFRDLGNLTHLFLHG-NRISSVPERAFRGLHSLDRLLLHQN-RVAHVHPH 195

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 44/211 (20%), Positives = 76/211 (36%), Gaps = 41/211 (19%)

Query: 53  LNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFA---EVKYLHWHGYPLKSLPSN 109
           ++   F  +  L  L          +  ++  +    F     +  LH     L+ L   
Sbjct: 71  IDAAAFTGLALLEQLDL-------SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPG 123

Query: 110 HSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSK 168
                 +F  +             L  L L  +  L++LP   F +L  LT L L G ++
Sbjct: 124 ------LFRGLAA-----------LQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHG-NR 164

Query: 169 LKRLPE---ISSGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSS-LCK 223
           +  +PE       ++ +L L    +  +   +F  L RL  L L     L +LP+  L  
Sbjct: 165 ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAP 223

Query: 224 LKSLELLSLRG----CS-NLQRLPDRLASYR 249
           L++L+ L L      C    + L   L  +R
Sbjct: 224 LRALQYLRLNDNPWVCDCRARPLWAWLQKFR 254

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 2e-08
 Identities = 18/110 (16%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 128 LWNSVKLVILNLSGSKSLKSLPAGIF--NLEFLTELDLSGCSKLKRLP-EISSGNIGQLF 184
                ++  L+L  ++ + ++       + + L  L+L     +  +  ++    +  L 
Sbjct: 140 EGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYN-FIYDVKGQVVFAKLKTLD 197

Query: 185 LSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234
           LS   +  +   F+    +  + L + K L  +  +L   ++LE   LRG
Sbjct: 198 LSSNKLAFMGPEFQSAAGVTWISLRNNK-LVLIEKALRFSQNLEHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 27/127 (21%), Positives = 47/127 (37%), Gaps = 16/127 (12%)

Query: 126 EQLWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQL- 183
           E   N  +  I  ++ S  LK   A +  +   + ELDLSG   L ++         +L 
Sbjct: 4   EIKQNGNRYKIEKVTDSS-LKQALASLRQSAWNVKELDLSGN-PLSQISAADLAPFTKLE 61

Query: 184 --FLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLEL-------LSLRG 234
              LS   + E     E L  L  LDL++   ++ L      +++L         +S   
Sbjct: 62  LLNLSSNVLYETL-DLESLSTLRTLDLNNN-YVQELL-VGPSIETLHAANNNISRVSCSR 118

Query: 235 CSNLQRL 241
               + +
Sbjct: 119 GQGKKNI 125

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 52.3 bits (126), Expect = 3e-08
 Identities = 39/169 (23%), Positives = 62/169 (36%), Gaps = 26/169 (15%)

Query: 90  FAEVKYLHWHGYPLKSLPSN--HSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGS 142
               K L     PL+ L S    S  +L  L++   +I+ +      +   L  L L+G+
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 143 KSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQ---LFLSGTAIEELPSS-- 196
             ++SL  G F  L  L +L       L  L     G++     L ++   I+       
Sbjct: 87  P-IQSLALGAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY 144

Query: 197 FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRL 245
           F  L  L  LDLS  K ++S+  +           LR    +  L   L
Sbjct: 145 FSNLTNLEHLDLSSNK-IQSIYCT----------DLRVLHQMPLLNLSL 182

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 48.8 bits (117), Expect = 3e-07
 Identities = 43/202 (21%), Positives = 73/202 (36%), Gaps = 31/202 (15%)

Query: 53  LNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFA---EVKYLHWHGYPLKSLPSN 109
           L   +F    +L+ L            C++  ++D  +     +  L   G P++SL   
Sbjct: 43  LGSYSFFSFPELQVLDLSR--------CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 110 --HSAEKLMFLEVPNSDIEQLWNSV-----KLVILNLSGSKSLKSLP-AGIF-NLEFLTE 160
                  L  L    +++  L N        L  LN++ +  ++S      F NL  L  
Sbjct: 95  AFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEH 153

Query: 161 LDLSGCSKLKRLPEIS-------SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR 213
           LDLS   K++ +                 L LS   +  +       +RL  L L   + 
Sbjct: 154 LDLSSN-KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQ- 211

Query: 214 LKSLPS-SLCKLKSLELLSLRG 234
           LKS+P     +L SL+ + L  
Sbjct: 212 LKSVPDGIFDRLTSLQKIWLHT 233

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 29/118 (24%)

Query: 142 SKSLKSLPAGIF----------------------NLEFLTELDLSGCSKLKRLPE---IS 176
             +   +P  +                       +   L  LDLS C +++ + +    S
Sbjct: 16  ELNFYKIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQS 74

Query: 177 SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSL-CKLKSLELLSL 232
             ++  L L+G  I+ L   +F  L  L  L   +   L SL +     LK+L+ L++
Sbjct: 75  LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNV 131

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 35/113 (30%), Positives = 54/113 (47%), Gaps = 7/113 (6%)

Query: 136 ILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISS-GNIGQLFLSGTAIEEL 193
           IL+LS +  L +           LT+L+L    +L +L    +   +G L LS   ++ L
Sbjct: 35  ILHLSENL-LYTFSLATLMPYTRLTQLNLDRA-ELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 194 PSSFELLLRLWLLDLSDCKRLKSLPSSL-CKLKSLELLSLRGCSNLQRLPDRL 245
           P   + L  L +LD+S  + L SLP      L  L+ L L+G + L+ LP  L
Sbjct: 93  PLLGQTLPALTVLDVSFNR-LTSLPLGALRGLGELQELYLKG-NELKTLPPGL 143

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 38/155 (24%), Positives = 65/155 (41%), Gaps = 12/155 (7%)

Query: 89  RFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQL----WNSVKLVILNLSGSKS 144
            +  +  L+     L  L  + +   L  L++ ++ ++ L         L +L++S ++ 
Sbjct: 53  PYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR- 111

Query: 145 LKSLPAGIF-NLEFLTELDLSGCSKLKRLPE---ISSGNIGQLFLSGTAIEELPSS-FEL 199
           L SLP G    L  L EL L G ++LK LP      +  + +L L+   + ELP+     
Sbjct: 112 LTSLPLGALRGLGELQELYLKG-NELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNG 170

Query: 200 LLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234
           L  L  L L +   L ++P        L    L G
Sbjct: 171 LENLDTLLLQE-NSLYTIPKGFFGSHLLPFAFLHG 204

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 4e-08
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 11/155 (7%)

Query: 94  KYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-KLVILNLSGSKSLKSLPAGI 152
           +YL      L+ LP   ++  L  ++V N+ +++L +    L  +    ++ L+ LP  +
Sbjct: 134 EYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ-LEELPE-L 191

Query: 153 FNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCK 212
            NL FLT +       LK+LP+    ++  +      +EELP   + L  L  +   +  
Sbjct: 192 QNLPFLTAIYADNN-SLKKLPD-LPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNN- 247

Query: 213 RLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS 247
            LK+LP     L++L +        L  LP+   S
Sbjct: 248 LLKTLPDLPPSLEALNVRDNY----LTDLPELPQS 278

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 27/123 (21%), Positives = 39/123 (31%), Gaps = 20/123 (16%)

Query: 138 NLSGSKSLKSLPAGIFNLEFLTELDLSGCS---------------KLKRLPEISSGNIGQ 182
            L  S +L  +P    N++  TE   +                   + RL +       +
Sbjct: 16  PLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHE 75

Query: 183 LFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242
           L L+   +  LP     L  L       C  L  LP     LKSL + +      L  LP
Sbjct: 76  LELNNLGLSSLPELPPHLESLVA----SCNSLTELPELPQSLKSLLVDNNN-LKALSDLP 130

Query: 243 DRL 245
             L
Sbjct: 131 PLL 133

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 36/155 (23%), Positives = 62/155 (40%), Gaps = 15/155 (9%)

Query: 94  KYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-KLVILNLSGSKSLKSLPAGI 152
           + +      L+ LP   +   L  +   N+ ++ L +    L  LN+  +  L  LP   
Sbjct: 218 ESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY-LTDLPELP 276

Query: 153 FNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCK 212
            +L FL   +    S L  LP     N+  L  S   I  L    +L   L  L++S+ K
Sbjct: 277 QSLTFLDVSENIF-SGLSELP----PNLYYLNASSNEIRSLC---DLPPSLEELNVSNNK 328

Query: 213 RLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS 247
            L  LP+   +L+ L        ++L  +P+   +
Sbjct: 329 -LIELPALPPRLERLIA----SFNHLAEVPELPQN 358

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 52.0 bits (125), Expect = 4e-08
 Identities = 30/206 (14%), Positives = 63/206 (30%), Gaps = 34/206 (16%)

Query: 53  LNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLR-FAEVKYLHW----HGYPLKSLP 107
           L+ + F  +  L FL                 L +   F+ +  L      +      + 
Sbjct: 115 LSSSWFKPLSSLTFLNLL--------GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166

Query: 108 SN--HSAEKLMFLEVPNSDIEQLWNSV-----KLVILNLSGSKSLKSLPAGIF-NLEFLT 159
                    L  LE+  SD++            +  L L   +    L          + 
Sbjct: 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVE 225

Query: 160 ELDLSG----CSKLKRLPEISSGNIGQ------LFLSGTAIEELPSSFELLLRLWLLDLS 209
            L+L            L    + ++ +      + ++  ++ ++      +  L  L+ S
Sbjct: 226 CLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS 285

Query: 210 DCKRLKSLPSSLCK-LKSLELLSLRG 234
              +LKS+P  +   L SL+ + L  
Sbjct: 286 RN-QLKSVPDGIFDRLTSLQKIWLHT 310

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 37/164 (22%), Positives = 61/164 (37%), Gaps = 28/164 (17%)

Query: 103 LKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-----KLVILNLSGSKSLKSLPAGIF-NLE 156
           L S+PS  +   +  L++ N+ I  + NS       L  L L+ +  + ++    F +L 
Sbjct: 43  LNSIPSGLTEA-VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG-INTIEEDSFSSLG 100

Query: 157 FLTELDLSGCSKLKRLPE---ISSGNIGQLFLSGTAIEELP--SSFELLLRLWLLDLSDC 211
            L  LDLS    L  L         ++  L L G   + L   S F  L +L +L + + 
Sbjct: 101 SLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM 159

Query: 212 KRLKSLPS--------------SLCKLKSLELLSLRGCSNLQRL 241
                +                    L+S E  SL+   N+  L
Sbjct: 160 DTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHL 203

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 42.8 bits (101), Expect = 5e-05
 Identities = 34/107 (31%), Positives = 49/107 (45%), Gaps = 10/107 (9%)

Query: 142 SKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPE---ISSGNIGQLFLSGTAIEELPS-SF 197
           S SL S+P+G+   E +  LDLS  +++  +         N+  L L+   I  +   SF
Sbjct: 40  SGSLNSIPSGLT--EAVKSLDLSN-NRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF 96

Query: 198 ELLLRLWLLDLSDCKRLKSLPSSL-CKLKSLELLSLRGCSNLQRLPD 243
             L  L  LDLS    L +L SS    L SL  L+L G    + L +
Sbjct: 97  SSLGSLEHLDLSYN-YLSNLSSSWFKPLSSLTFLNLLGN-PYKTLGE 141

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 40.5 bits (95), Expect = 3e-04
 Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 24/148 (16%)

Query: 42  CLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGY 101
             ++    +I      FA +  L  L+  +S         +  +Q++      +L  H  
Sbjct: 156 VGNMDTFTKIQ--RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV-----SHLILHMK 208

Query: 102 PLKSLPSN-----HSAEKLM----------FLEVPNSDIEQLWNSVKLVILNLSGSKSLK 146
               L         S E L           F E+   +   L        + ++   SL 
Sbjct: 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDE-SLF 267

Query: 147 SLPAGIFNLEFLTELDLSGCSKLKRLPE 174
            +   +  +  L EL+ S   +LK +P+
Sbjct: 268 QVMKLLNQISGLLELEFSRN-QLKSVPD 294

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 51.6 bits (124), Expect = 5e-08
 Identities = 45/216 (20%), Positives = 82/216 (37%), Gaps = 39/216 (18%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFL-------KFYSSSFNGENRCKVSHLQDLRFAEV 93
           L LS   +        +      L++L          SS+F G     +  L+ L F   
Sbjct: 57  LSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-----LEQLEHLDFQHS 111

Query: 94  KYLHWHGYPLKSLPSN---HSAEKLMFLEVPNSDIEQLWNSV-----KLVILNLSGSKSL 145
                    LK +       S   L++L++ ++     +N +      L +L ++G+   
Sbjct: 112 N--------LKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 163

Query: 146 KSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQL---FLSGTAIEELPSS-FELL 200
           ++    IF  L  LT LDLS C +L++L   +  ++  L    +S      L +  ++ L
Sbjct: 164 ENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222

Query: 201 LRLWLLDLSDCKRLKSLPSSLCK--LKSLELLSLRG 234
             L +LD S    + +      +    SL  L+L  
Sbjct: 223 NSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQ 257

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.6 bits (119), Expect = 3e-07
 Identities = 31/119 (26%), Positives = 50/119 (42%), Gaps = 10/119 (8%)

Query: 134 LVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGC--SKLKRLPEISSG--NIGQLFLSGT 188
              L L  +K L+SLP G+F  L  LT+L LS    S      +   G  ++  L LS  
Sbjct: 30  ATRLELESNK-LQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 189 AIEELPSSFELLLRLWLLDLSDCKRLKSLPSS--LCKLKSLELLSLRGCSNLQRLPDRL 245
            +  + S+F  L +L  LD      LK +        L++L  L +    + +   + +
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGI 145

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 51.2 bits (123), Expect = 1e-07
 Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 12/201 (5%)

Query: 52  PLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHS 111
             + +    +  L   +F  +  +      +     L    V         ++ +     
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT--NVSSFSLVSVTIERVKDFSY 302

Query: 112 AEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKR 171
                 LE+ N    Q        +  L+ + +         +L  L  LDLS  + L  
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSR-NGLSF 361

Query: 172 LPEISSG-----NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSL--PSSLCKL 224
               S       ++  L LS   +  + S+F  L +L  LD      LK +   S    L
Sbjct: 362 KGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSL 420

Query: 225 KSLELLSLRGCSNLQRLPDRL 245
           ++L  L +    + +   + +
Sbjct: 421 RNLIYLDISHT-HTRVAFNGI 440

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 46.2 bits (110), Expect = 4e-06
 Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 6/117 (5%)

Query: 123 SDIEQLWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIG 181
           S+     +   L+ L++S +   +    GIF  L  L  L ++G S  +         + 
Sbjct: 412 SEFSVFLSLRNLIYLDISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 182 QLF---LSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234
            L    LS   +E+L P++F  L  L +L++S              L SL++L    
Sbjct: 471 NLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSL 527

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 31/112 (27%), Positives = 47/112 (41%), Gaps = 8/112 (7%)

Query: 128 LWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQL--- 183
             +   L  L L+G+  ++SL  G F  L  L +L     + L  L     G++  L   
Sbjct: 72  YQSLSHLSTLILTGN-PIQSLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKEL 129

Query: 184 FLSGTAIE--ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLR 233
            ++   I+  +LP  F  L  L  LDLS  K      + L  L  + LL+L 
Sbjct: 130 NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 25/108 (23%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 134 LVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQL---FLSGTA 189
              L+LS +  L+ L +  F +   L  LDLS C  ++ + + +  ++  L    L+G  
Sbjct: 30  TKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP 87

Query: 190 IEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCS 236
           I+ L   +F  L  L  L   +          +  LK+L+ L++    
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL 135

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 35/203 (17%), Positives = 60/203 (29%), Gaps = 35/203 (17%)

Query: 53  LNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSA 112
           L   +F    +L+ L                 L  L       L   G P++SL      
Sbjct: 43  LGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS-----TLILTGNPIQSLAL---- 93

Query: 113 EKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKR 171
                                L  L    + +L SL      +L+ L EL+++    ++ 
Sbjct: 94  -------------GAFSGLSSLQKLVAVET-NLASLENFPIGHLKTLKELNVAHN-LIQS 138

Query: 172 LPEISS----GNIGQLFLSGTAIEEL-PSSF----ELLLRLWLLDLSDCKRLKSLPSSLC 222
                      N+  L LS   I+ +  +      ++ L    LDLS    +  +     
Sbjct: 139 FKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAF 197

Query: 223 KLKSLELLSLRGCSNLQRLPDRL 245
           K   L  L+LR   +   +    
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTC 220

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 33/197 (16%), Positives = 71/197 (36%), Gaps = 18/197 (9%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDL-RFAEVKYLHWHGY 101
           L+L     +  + +  + M  L +L             KV  +  +    ++  L  +  
Sbjct: 137 LNLGANHNL-SDLSPLSNMTGLNYLTVTE--------SKVKDVTPIANLTDLYSLSLNYN 187

Query: 102 PLKSLPSNHSAEKLMFLEVPN---SDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFL 158
            ++ +    S   L +        +DI  + N  +L  L +  +K +  L   + NL  L
Sbjct: 188 QIEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNK-ITDLS-PLANLSQL 245

Query: 159 TELDLSGCSKLKRLPEISS-GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSL 217
           T L++    ++  +  +     +  L +    I ++ S    L +L  L L++ +     
Sbjct: 246 TWLEIGTN-QISDINAVKDLTKLKMLNVGSNQISDI-SVLNNLSQLNSLFLNNNQLGNED 303

Query: 218 PSSLCKLKSLELLSLRG 234
              +  L +L  L L  
Sbjct: 304 MEVIGGLTNLTTLFLSQ 320

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 49.5 bits (119), Expect = 3e-07
 Identities = 34/162 (20%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 78  NRCKVSHLQDL-RFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPN---SDIEQLWNSVK 133
            +  V+ +        +  L   G  + S+        L +L +     +DI  L N VK
Sbjct: 30  QKASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVK 89

Query: 134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISS-GNIGQLFLSGTAIEE 192
           L  L +  +K +  + A + NL  L EL L+    +  +  +++   +  L L       
Sbjct: 90  LTNLYIGTNK-ITDISA-LQNLTNLRELYLNED-NISDISPLANLTKMYSLNLGANHNLS 146

Query: 193 LPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234
             S    +  L  L +++ K +K +   +  L  L  LSL  
Sbjct: 147 DLSPLSNMTGLNYLTVTESK-VKDVT-PIANLTDLYSLSLNY 186

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 3e-06
 Identities = 26/121 (21%), Positives = 53/121 (43%), Gaps = 7/121 (5%)

Query: 123 SDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISS-GNIG 181
           +D+        +  L ++G K + S+  GI  L  L  L+L+G  ++  +  +S+   + 
Sbjct: 35  TDVVTQEELESITKLVVAGEK-VASIQ-GIEYLTNLEYLNLNGN-QITDISPLSNLVKLT 91

Query: 182 QLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRL 241
            L++    I ++ +  + L  L  L L++   +  +   L  L  +  L+L    NL  L
Sbjct: 92  NLYIGTNKITDISA-LQNLTNLRELYLNEDN-ISDISP-LANLTKMYSLNLGANHNLSDL 148

Query: 242 P 242
            
Sbjct: 149 S 149

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.6 bits (109), Expect = 5e-06
 Identities = 26/122 (21%), Positives = 49/122 (40%), Gaps = 7/122 (5%)

Query: 114 KLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLP 173
            L  L  P + I    +  + +   L  +     +      LE +T+L ++G  K+  + 
Sbjct: 4   TLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGE-KVASIQ 60

Query: 174 EISS-GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSL 232
            I    N+  L L+G  I ++      L++L  L +   K +  +  +L  L +L  L L
Sbjct: 61  GIEYLTNLEYLNLNGNQITDIS-PLSNLVKLTNLYIGTNK-ITDIS-ALQNLTNLRELYL 117

Query: 233 RG 234
             
Sbjct: 118 NE 119

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 7/114 (6%)

Query: 123 SDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISS-GNIG 181
           +D+  L N  +L  L +  ++ +  +   + +L  L  L++    ++  +  +++   + 
Sbjct: 234 TDLSPLANLSQLTWLEIGTNQ-ISDIN-AVKDLTKLKMLNVGSN-QISDISVLNNLSQLN 290

Query: 182 QLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234
            LFL+   +          L  L  L LS    +  +   L  L  ++      
Sbjct: 291 SLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKMDSADFAN 342

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.4 bits (121), Expect = 2e-07
 Identities = 46/214 (21%), Positives = 84/214 (39%), Gaps = 21/214 (9%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKY-LHWHGY 101
           LDLS      +  ++FA + +L +     ++        +  L ++R+  +K        
Sbjct: 253 LDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSI 312

Query: 102 PLKSLPSNHSAE-----KLMFLEVPNSDIEQL-----WNSVKLVILNLSGSK-SLKSLPA 150
            L SLP            L  L + ++DI  +        + L  L+LS S  SL++L  
Sbjct: 313 SLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTN 372

Query: 151 GIF---NLEFLTELDLSGCSKLKRLPEISSGNIGQL---FLSGTAIEEL--PSSFELLLR 202
             F       L  L+L+   K+ ++   +   +G L    L    I +      +  L  
Sbjct: 373 ETFVSLAHSPLHILNLTKN-KISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLEN 431

Query: 203 LWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCS 236
           ++ + LS  K L+   +S   + SL+ L LR  +
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA 465

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 49.2 bits (118), Expect = 6e-07
 Identities = 44/221 (19%), Positives = 84/221 (38%), Gaps = 23/221 (10%)

Query: 41  ICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG 100
               +S      ++  +F  ++ L  L    +   G      + L +L++  +       
Sbjct: 308 TKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSL 367

Query: 101 YPLKS-LPSNHSAEKLMFL--------EVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAG 151
             L +    + +   L  L        ++ +     L +   L +L+L  ++  + L   
Sbjct: 368 RTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH---LEVLDLGLNEIGQELTGQ 424

Query: 152 IF-NLEFLTELDLSGCSKLKRLPEISSGNIGQLF---LSG---TAIEELPSSFELLLRLW 204
            +  LE + E+ LS   K  +L   S   +  L    L       ++  PS F+ L  L 
Sbjct: 425 EWRGLENIFEIYLSYN-KYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLT 483

Query: 205 LLDLSDCKRLKSLPSS-LCKLKSLELLSLRGCSNLQRLPDR 244
           +LDLS+   + ++    L  L+ LE+L L+   NL RL   
Sbjct: 484 ILDLSNN-NIANINDDMLEGLEKLEILDLQHN-NLARLWKH 522

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.4 bits (108), Expect = 9e-06
 Identities = 45/216 (20%), Positives = 83/216 (38%), Gaps = 32/216 (14%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENR----CKVSHLQDLRFAEVKYL 96
           L+L+  K+ +I    + F+ +  L  L    +    E        + ++ ++  +  KY 
Sbjct: 386 LNLTKNKISKIE--SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKY- 442

Query: 97  HWHGYPLKSLPSNHSAEKLMF----LEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGI 152
                   S     S ++LM     L+  +S          L IL+LS +  + ++   +
Sbjct: 443 --LQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IANINDDM 499

Query: 153 F-NLEFLTELDLSGCSKLKRLPEISSG-----------NIGQLFLSGTAIEEL-PSSFEL 199
              LE L  LDL     L RL + ++            ++  L L     +E+    F+ 
Sbjct: 500 LEGLEKLEILDLQHN-NLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558

Query: 200 LLRLWLLDLSDCKRLKSL-PSSLCKLKSLELLSLRG 234
           L  L ++DL     L +L  S      SL+ L+L+ 
Sbjct: 559 LFELKIIDLGLN-NLNTLPASVFNNQVSLKSLNLQK 593

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.5 bits (103), Expect = 4e-05
 Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 9/125 (7%)

Query: 128 LWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQL--- 183
                 L  L+L  +  ++ +    F   + L  LDLS    L      +   +  L   
Sbjct: 93  FAFCTNLTELHLMSNS-IQKIKNNPFVKQKNLITLDLSHN-GLSSTKLGTQVQLENLQEL 150

Query: 184 FLSGTAIEELPS---SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQR 240
            LS   I+ L S          L  L+LS  +  +  P     +  L  L L        
Sbjct: 151 LLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210

Query: 241 LPDRL 245
           L ++L
Sbjct: 211 LTEKL 215

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 3/89 (3%)

Query: 158 LTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKS 216
               D S   KL ++P+    NI  L L+   +  L  ++F    +L  LD+      K 
Sbjct: 6   HEVADCSHL-KLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL 64

Query: 217 LPSSLCKLKSLELLSLRGCSNLQRLPDRL 245
            P    KL  L++L+L+    L +L D+ 
Sbjct: 65  EPELCQKLPMLKVLNLQHN-ELSQLSDKT 92

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 6e-05
 Identities = 27/116 (23%), Positives = 42/116 (36%), Gaps = 8/116 (6%)

Query: 134 LVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQL---FLSGTA 189
           + +LNL+ ++ L+ LPA  F     LT LD+     + +L       +  L    L    
Sbjct: 27  ITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFN-TISKLEPELCQKLPMLKVLNLQHNE 84

Query: 190 IEELP-SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR 244
           + +L   +F     L  L L      K   +   K K+L  L L     L      
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN-GLSSTKLG 139

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 28/208 (13%), Positives = 65/208 (31%), Gaps = 37/208 (17%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGE------NRCKVSHLQDLRFAEVKYL 96
           L+LS  +    +P  F  + +L  L   +                 + +++L  +  +  
Sbjct: 176 LELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQ-- 233

Query: 97  HWHGYPLKSLP----SNHSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKS 147
                 L +             L  L++  +++  +         +L    L  +     
Sbjct: 234 ------LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL 287

Query: 148 LPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEEL-PSSFELLLRLWLL 206
               +  L  +  L+L               +  +  +S  ++ ++   SF+ L  L  L
Sbjct: 288 FSHSLHGLFNVRYLNL-------------KRSFTKQSISLASLPKIDDFSFQWLKCLEHL 334

Query: 207 DLSDCKRLKSLPSSLCKLKSLELLSLRG 234
           ++ D        +    L +L+ LSL  
Sbjct: 335 NMEDNDIPGIKSNMFTGLINLKYLSLSN 362

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 41/210 (19%), Positives = 65/210 (30%), Gaps = 31/210 (14%)

Query: 53  LNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN--H 110
               T  ++  L+ L   ++            L     + +K L      +K       H
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKS---EELDIFANSSLKKLELSSNQIKEFSPGCFH 192

Query: 111 SAEKLMFL--------EVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF---NLEFLT 159
           +  +L  L              +     +  +  L+LS S  L +     F       LT
Sbjct: 193 AIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNS-QLSTTSNTTFLGLKWTNLT 251

Query: 160 ELDLSGCSKLKRLPEISSGNIGQL---FLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLK 215
            LDLS    L  +   S   + QL   FL    I+ L   S   L  +  L+L      +
Sbjct: 252 MLDLSYN-NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ 310

Query: 216 SL---------PSSLCKLKSLELLSLRGCS 236
           S+           S   LK LE L++    
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDND 340

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 2e-07
 Identities = 37/257 (14%), Positives = 85/257 (33%), Gaps = 55/257 (21%)

Query: 4   LEYHDALELFSRHAFKQNHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPNTFAKMRK 63
            +Y D L +F   AF         +    K  + +    L   ++  I ++ +  +   +
Sbjct: 16  YQYKDILSVF-EDAFV--------DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66

Query: 64  LRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNS 123
           L F    S       +     L+        Y  +   P+K+     S    M+      
Sbjct: 67  L-FWTLLSKQEEMVQKFVEEVLRI------NY-KFLMSPIKTEQRQPSMMTRMY----IE 114

Query: 124 DIEQLWNSVKLVI-LNLSGSKSLKSLPAGIFNL---EFLTELDLSGCSKLKRLPEISSGN 179
             ++L+N  ++    N+S  +    L   +  L   + +    + G  K           
Sbjct: 115 QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK----------- 163

Query: 180 IGQLFLSGTAIEELPSSFELLLRL-----WLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234
                 +  A++    S+++  ++     W L+L +C   +++      L+ L+ L  + 
Sbjct: 164 ------TWVALDVC-LSYKVQCKMDFKIFW-LNLKNCNSPETV------LEMLQKLLYQI 209

Query: 235 CSNLQRLPDRLASYRRH 251
             N     D  ++ +  
Sbjct: 210 DPNWTSRSDHSSNIKLR 226

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.5 bits (112), Expect = 2e-06
 Identities = 44/289 (15%), Positives = 82/289 (28%), Gaps = 58/289 (20%)

Query: 2   EALEYHDALELFSRHAF-----KQNHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPN 56
           +    +          F       N P+ V E L     +              I L  +
Sbjct: 169 DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228

Query: 57  TFAKMRKLRFL--KFYSSS---------------FNGENRCKVSHLQDLRFAEV-KYLHW 98
           +  +    R L  K Y +                FN    CK+  L   RF +V  +L  
Sbjct: 229 S-IQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNL--SCKI--LLTTRFKQVTDFLS- 282

Query: 99  HGYPLKSLPSNHSAEKL-------MFLEVPNSDIEQLWNSVKLVI-LNLSG-SKSLKSLP 149
                  +  +H +  L       + L+  +   + L   V       LS  ++S++   
Sbjct: 283 -AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341

Query: 150 AGIFNLEFLTELDLSGCSKLKRLPEIS-----SGNIGQLFLSGTAI--EELPSSFELLLR 202
           A   N + +       C KL  + E S          ++F    ++          LL  
Sbjct: 342 ATWDNWKHVN------CDKLTTIIESSLNVLEPAEYRKMFDR-LSVFPPSAHIPTILLSL 394

Query: 203 LWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYRRH 251
           +W   +     +      + KL    L+  +   +   +P      +  
Sbjct: 395 IWFDVIKSDVMV-----VVNKLHKYSLVEKQPKESTISIPSIYLELKVK 438

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.2 bits (118), Expect = 3e-07
 Identities = 50/167 (29%), Positives = 76/167 (45%), Gaps = 17/167 (10%)

Query: 90  FAEVKYLHWHGYPLKSLPSN--HSAEKLMFLEVPNSDIEQLWNSV-----KLVILNLSGS 142
            A+ K L      L SLPS   H   KL  L + ++ ++ L   +      L  L ++  
Sbjct: 36  PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT-D 94

Query: 143 KSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPE---ISSGNIGQLFLSGTAIEELPS-SF 197
             L++LP G+F  L  L EL L   ++LK LP     S   +  L L    ++ LP   F
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDR-NQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153

Query: 198 ELLLRLWLLDLSDCKRLKSLPSSLC-KLKSLELLSLRGCSNLQRLPD 243
           + L  L  L L + + LK +P     KL  L+ L L   + L+R+P+
Sbjct: 154 DKLTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDN-NQLKRVPE 198

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 37/140 (26%), Positives = 55/140 (39%), Gaps = 40/140 (28%)

Query: 142 SKSLKSLPAGIF----------------------NLEFLTELDLSGCSKLKRLPEISSG- 178
           SK L ++P+ I                        L  L  L L+      +L  + +G 
Sbjct: 25  SKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLND----NKLQTLPAGI 80

Query: 179 -----NIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDCKRLKSLPSSLC-KLKSLELLS 231
                N+  L+++   ++ LP   F+ L+ L  L L   + LKSLP  +   L  L  LS
Sbjct: 81  FKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLS 139

Query: 232 LRGCSNLQRLP----DRLAS 247
           L     LQ LP    D+L S
Sbjct: 140 LGYN-ELQSLPKGVFDKLTS 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.1 bits (118), Expect = 4e-07
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 6/111 (5%)

Query: 130 NSVKLVILNLSGSK--SLKSLPAGIFNLEFLTELDLSGCSKLK-RLP-EISS-GNIGQLF 184
            + ++  L+LSG        +P+ + NL +L  L + G + L   +P  I+    +  L+
Sbjct: 48  QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLY 107

Query: 185 LSGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234
           ++ T +   +P     +  L  LD S      +LP S+  L +L  ++  G
Sbjct: 108 ITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 40.2 bits (95), Expect = 4e-04
 Identities = 30/157 (19%), Positives = 47/157 (29%), Gaps = 50/157 (31%)

Query: 126 EQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSG-------------CSKLKRL 172
           + L     LV L+ S +    +LP  I +L  L  +   G              SKL   
Sbjct: 119 DFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTS 178

Query: 173 -------------PEISSGNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLS--------- 209
                        P  ++ N+  + LS   +E +    F        + L+         
Sbjct: 179 MTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG 238

Query: 210 ---DCKRLKSL-----------PSSLCKLKSLELLSL 232
                K L  L           P  L +LK L  L++
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNV 275

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 48.9 bits (117), Expect = 4e-07
 Identities = 31/226 (13%), Positives = 78/226 (34%), Gaps = 26/226 (11%)

Query: 21  NHPDVVYEELSSKGTEKIEGICLDLSKVKEIPLNPN------TFAKMRKLRFLKFYSSSF 74
              + +                 DL  +  +               +  L  L+      
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA-DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKD--- 72

Query: 75  NGENRCKVSHLQDLR-FAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPN---SDIEQLWN 130
                 +++ L  L+   ++  L   G PLK++ +    + +  L++ +   +D+  L  
Sbjct: 73  -----NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127

Query: 131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISS-GNIGQLFLSGTA 189
              L +L L  ++ + ++   +  L  L  L +    ++  L  +++   +  L      
Sbjct: 128 LSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNA-QVSDLTPLANLSKLTTLKADDNK 184

Query: 190 IEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC 235
           I ++ S    L  L  + L + + +  + S L    +L +++L   
Sbjct: 185 ISDI-SPLASLPNLIEVHLKNNQ-ISDV-SPLANTSNLFIVTLTNQ 227

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 48.5 bits (116), Expect = 7e-07
 Identities = 27/189 (14%), Positives = 66/189 (34%), Gaps = 31/189 (16%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG 100
           ++L    +K   +    F  M+KL +++             ++ +       +  LH  G
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRI--------ADTNITTIPQGLPPSLTELHLDG 201

Query: 101 YPLKSLPSN--HSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIF 153
             +  + +        L  L +  + I  +      N+  L  L+L+ +K L  +P G+ 
Sbjct: 202 NKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLA 260

Query: 154 NLEFLTELDLSGCSKLKRLPEISSGNIGQ---------LFLSGTAIEEL---PSSFELLL 201
           + +++  + L   + +  +        G          + L    ++     PS+F  + 
Sbjct: 261 DHKYIQVVYLHN-NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319

Query: 202 RLWLLDLSD 210
               + L +
Sbjct: 320 VRAAVQLGN 328

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 45.4 bits (108), Expect = 6e-06
 Identities = 42/207 (20%), Positives = 85/207 (41%), Gaps = 30/207 (14%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG 100
           L L   K+ +I   P  FA + KL  L          N+  +  L +     ++ L  H 
Sbjct: 81  LILINNKISKIS--PGAFAPLVKLERLYLSK------NQ--LKELPEKMPKTLQELRVHE 130

Query: 101 YPLKSLPSN--HSAEKLMFLEVPNSDIEQLW-------NSVKLVILNLSGSKSLKSLPAG 151
             +  +  +  +   +++ +E+  + ++             KL  + ++ +  + ++P G
Sbjct: 131 NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTIPQG 189

Query: 152 IFNLEFLTELDLSGCSKLKRLPEIS---SGNIGQLFLSGTAIEELPS-SFELLLRLWLLD 207
           +     LTEL L G  K+ ++   S     N+ +L LS  +I  + + S      L  L 
Sbjct: 190 LP--PSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELH 246

Query: 208 LSDCKRLKSLPSSLCKLKSLELLSLRG 234
           L++ K L  +P  L   K ++++ L  
Sbjct: 247 LNNNK-LVKVPGGLADHKYIQVVYLHN 272

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 39.2 bits (92), Expect = 7e-04
 Identities = 26/126 (20%), Positives = 56/126 (44%), Gaps = 22/126 (17%)

Query: 133 KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQL---FLSGTA 189
           KL  L LS ++ LK LP  +   + L EL +    ++ ++ +     + Q+    L    
Sbjct: 101 KLERLYLSKNQ-LKELPEKMP--KTLQELRVHEN-EITKVRKSVFNGLNQMIVVELGTNP 156

Query: 190 IEEL---PSSFELLLRLWLLDLSDCKRLKSLPSSL-----------CKLKSLELLSLRGC 235
           ++       +F+ + +L  + ++D   + ++P  L            K+  ++  SL+G 
Sbjct: 157 LKSSGIENGAFQGMKKLSYIRIADT-NITTIPQGLPPSLTELHLDGNKITKVDAASLKGL 215

Query: 236 SNLQRL 241
           +NL +L
Sbjct: 216 NNLAKL 221

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 19/186 (10%)

Query: 54  NPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDL-RFAEVKYLHWHGYPLKSLPSNHSA 112
           + +  AK+  L  L   +         ++S +  L     +  L  +G  LK + +  S 
Sbjct: 191 DISVLAKLTNLESLIATN--------NQISDITPLGILTNLDELSLNGNQLKDIGTLASL 242

Query: 113 EKLMFLEVPN---SDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKL 169
             L  L++ N   S++  L    KL  L L  ++ + ++   +  L  LT L+L+   +L
Sbjct: 243 TNLTDLDLANNQISNLAPLSGLTKLTELKLGANQ-ISNIS-PLAGLTALTNLELNEN-QL 299

Query: 170 KRLPEISS-GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLE 228
           + +  IS+  N+  L L    I ++ S    L +L  L   + K +  +  SL  L ++ 
Sbjct: 300 EDISPISNLKNLTYLTLYFNNISDI-SPVSSLTKLQRLFFYNNK-VSDVS-SLANLTNIN 356

Query: 229 LLSLRG 234
            LS   
Sbjct: 357 WLSAGH 362

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.1 bits (110), Expect = 5e-06
 Identities = 31/147 (21%), Positives = 55/147 (37%), Gaps = 10/147 (6%)

Query: 94  KYLHWHGYPLKSLPSNHSAEKLMFLEVPN---SDIEQLWNSVKLVILNLSGSKSLKSLPA 150
             L      + +L       KL  L++     S+I  L     L  L L+ ++ L+ +  
Sbjct: 246 TDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQ-LEDIS- 303

Query: 151 GIFNLEFLTELDLSGCSKLKRLPEISS-GNIGQLFLSGTAIEELPSSFELLLRLWLLDLS 209
            I NL+ LT L L     +  +  +SS   + +LF     + ++ S    L  +  L   
Sbjct: 304 PISNLKNLTYLTLYFN-NISDISPVSSLTKLQRLFFYNNKVSDVSS-LANLTNINWLSAG 361

Query: 210 DCKRLKSLPSSLCKLKSLELLSLRGCS 236
             + +  L   L  L  +  L L   +
Sbjct: 362 HNQ-ISDLTP-LANLTRITQLGLNDQA 386

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 8e-06
 Identities = 16/114 (14%), Positives = 44/114 (38%), Gaps = 7/114 (6%)

Query: 123 SDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISS-GNIG 181
           + I       + +   L  +    ++     +L+ +T L       +K +  +    N+ 
Sbjct: 15  NQIFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRL-GIKSIDGVEYLNNLT 71

Query: 182 QLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC 235
           Q+  S   + ++    + L +L  + +++ + +  +   L  L +L  L+L   
Sbjct: 72  QINFSNNQLTDIT-PLKNLTKLVDILMNNNQ-IADIT-PLANLTNLTGLTLFNN 122

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 9e-05
 Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 28/164 (17%)

Query: 103 LKSLPSNHSAEKLMFLEVPN---SDIEQLWNSVKLVILNLSGSK-----------SLKSL 148
           +  +    +   L  L + N   +DI+ L N   L  L LS +            SL+ L
Sbjct: 102 IADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQL 161

Query: 149 --------PAGIFNLEFLTELDLSGCSKLKRLPEISS-GNIGQLFLSGTAIEELPSSFEL 199
                      + NL  L  LD+S   K+  +  ++   N+  L  +   I ++     +
Sbjct: 162 SFGNQVTDLKPLANLTTLERLDISSN-KVSDISVLAKLTNLESLIATNNQISDIT-PLGI 219

Query: 200 LLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD 243
           L  L  L L+  + LK +  +L  L +L  L L     +  L  
Sbjct: 220 LTNLDELSLNGNQ-LKDIG-TLASLTNLTDLDLANN-QISNLAP 260

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 47.0 bits (111), Expect = 2e-06
 Identities = 24/97 (24%), Positives = 38/97 (39%), Gaps = 5/97 (5%)

Query: 142 SKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQL---FLSGTAIEEL-PSSF 197
                     +   E LTEL +     L+ L       +G+L    +  + +  + P +F
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF 76

Query: 198 ELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG 234
               RL  L+LS    L+SL     +  SL+ L L G
Sbjct: 77  HFTPRLSRLNLSFN-ALESLSWKTVQGLSLQELVLSG 112

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.9 bits (112), Expect = 2e-06
 Identities = 44/206 (21%), Positives = 82/206 (39%), Gaps = 29/206 (14%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG 100
           L L   K+ +I      F+ +RKL+ L     S N      +  +     + +  L  H 
Sbjct: 83  LVLVNNKISKIH--EKAFSPLRKLQKLYI---SKN-----HLVEIPPNLPSSLVELRIHD 132

Query: 101 YPLKSLPSN--HSAEKLMFLEVPNSDIEQLW------NSVKLVILNLSGSKSLKSLPAGI 152
             ++ +P         +  +E+  + +E         + +KL  L +S +K L  +P  +
Sbjct: 133 NRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAK-LTGIPKDL 191

Query: 153 FNLEFLTELDLSGCSKLKRLPEIS---SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDL 208
              E L EL L   +K++ +          + +L L    I  + + S   L  L  L L
Sbjct: 192 P--ETLNELHLDH-NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248

Query: 209 SDCKRLKSLPSSLCKLKSLELLSLRG 234
            +  +L  +P+ L  LK L+++ L  
Sbjct: 249 DNN-KLSRVPAGLPDLKLLQVVYLHT 273

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 43.9 bits (104), Expect = 2e-05
 Identities = 27/192 (14%), Positives = 68/192 (35%), Gaps = 32/192 (16%)

Query: 43  LDLS--KVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG 100
           +++    ++     P  F  + KL +L+         +  K++ +       +  LH   
Sbjct: 152 IEMGGNPLENSGFEPGAFDGL-KLNYLRI--------SEAKLTGIPKDLPETLNELHLDH 202

Query: 101 YPLKSLPSNH--SAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIF 153
             ++++         KL  L + ++ I  +          L  L+L  +K L  +PAG+ 
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLP 261

Query: 154 NLEFLTELDLSGCSKLKRLPE---------ISSGNIGQLFLSGTAIEEL---PSSFELLL 201
           +L+ L  + L   + + ++           +       + L    +      P++F  + 
Sbjct: 262 DLKLLQVVYLHT-NNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 202 RLWLLDLSDCKR 213
               +   + K+
Sbjct: 321 DRLAIQFGNYKK 332

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 46.2 bits (110), Expect = 2e-06
 Identities = 35/121 (28%), Positives = 54/121 (44%), Gaps = 29/121 (23%)

Query: 132 VKLVILNLSGSKSLKSLPAGIFN-LEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAI 190
           + L  L L  ++ L +LP G+F+ L  LT LDL   ++L  LP                 
Sbjct: 64  INLKELYLGSNQ-LGALPVGVFDSLTQLTVLDLGT-NQLTVLP----------------- 104

Query: 191 EELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP----DRLA 246
               + F+ L+ L  L +   K L  LP  + +L  L  L+L   + L+ +P    DRL+
Sbjct: 105 ---SAVFDRLVHLKELFMCCNK-LTELPRGIERLTHLTHLALDQ-NQLKSIPHGAFDRLS 159

Query: 247 S 247
           S
Sbjct: 160 S 160

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 46.2 bits (110), Expect = 3e-06
 Identities = 43/157 (27%), Positives = 75/157 (47%), Gaps = 16/157 (10%)

Query: 91  AEVKYLHWHGYPLKSLPSN--HSAEKLMFLEVPNSDIEQLWNSV-----KLVILNLSGSK 143
           A+ + L      L +L         KL +L +  + ++ L   V     +L  L L+ + 
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA-NN 93

Query: 144 SLKSLPAGIF-NLEFLTELDLSGCSKLKRLPE---ISSGNIGQLFLSGTAIEELPSS-FE 198
            L SLP G+F +L  L +L L G ++LK LP         + +L L+   ++ +P+  F+
Sbjct: 94  QLASLPLGVFDHLTQLDKLYLGG-NQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152

Query: 199 LLLRLWLLDLSDCKRLKSLP-SSLCKLKSLELLSLRG 234
            L  L  L LS   +L+S+P  +  +L  L+ ++L G
Sbjct: 153 KLTNLQTLSLST-NQLQSVPHGAFDRLGKLQTITLFG 188

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 46.8 bits (111), Expect = 3e-06
 Identities = 38/212 (17%), Positives = 80/212 (37%), Gaps = 18/212 (8%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYP 102
           + L    +      +   ++ L   +  S  F            ++    +K     G  
Sbjct: 257 VKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNM---NIKNFTVSGTR 313

Query: 103 LKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-----KLVILNLSGSKSLKSLP--AGIF-N 154
           +  +         + L+  N+ +            +L  L L  ++ LK L   A +   
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQ-LKELSKIAEMTTQ 372

Query: 155 LEFLTELDLSGCSKLKRLPEI---SSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDC 211
           ++ L +LD+S  S      +     + ++  L +S   + +      L  R+ +LDL   
Sbjct: 373 MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFR-CLPPRIKVLDLHSN 431

Query: 212 KRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD 243
           K +KS+P  + KL++L+ L++     L+ +PD
Sbjct: 432 K-IKSIPKQVVKLEALQELNVASN-QLKSVPD 461

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.3 bits (110), Expect = 5e-06
 Identities = 39/205 (19%), Positives = 72/205 (35%), Gaps = 25/205 (12%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYP 102
           +DL K     +   TF  + KL+ L    ++         + +  +    +  +   G  
Sbjct: 343 IDLQKNHIAIIQDQTFKFLEKLQTLDLRDNAL--------TTIHFIPS--IPDIFLSGNK 392

Query: 103 LKSLPSNH-SAEKLMFLEVPNSDIEQLW---NSVKLVILNLSGSKSLKSLPAGIF-NLEF 157
           L +LP  + +A  +   E    +++ L+       L IL L+ ++               
Sbjct: 393 LVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPS 452

Query: 158 LTELDLSGCS-KLKRLPEISSGNIGQ------LFLSGTAIEELP-SSFELLLRLWLLDLS 209
           L +L L     +L    E+             L+L+   +  LP   F  L  L  L L+
Sbjct: 453 LEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLN 512

Query: 210 DCKRLKSLPSSLCKLKSLELLSLRG 234
              RL  L  +     +LE+L +  
Sbjct: 513 SN-RLTVLSHND-LPANLEILDISR 535

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.3 bits (102), Expect = 4e-05
 Identities = 28/122 (22%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 119 EVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISS 177
           +   +    L  S  +  L+LS    + SL + +F  L+ L  L+L+   K+ ++ + + 
Sbjct: 254 DPDQNTFAGLARS-SVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYN-KINKIADEAF 310

Query: 178 GNIGQL---FLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLR 233
             +  L    LS   + EL S +F  L ++  +DL           +   L+ L+ L LR
Sbjct: 311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLR 370

Query: 234 GC 235
             
Sbjct: 371 DN 372

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 7e-05
 Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 32/211 (15%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYP 102
           L+LS      L  + F  + K+ ++    +            L+ L     + L      
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL-----QTLDLRDNA 373

Query: 103 LKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF--NLEFLTE 160
           L ++    S   +         + ++  +    +++LS ++ L++L    F   +  L  
Sbjct: 374 LTTIHFIPSIPDIFLSGNKLVTLPKINLT--ANLIHLSENR-LENLDILYFLLRVPHLQI 430

Query: 161 LDLSGCSKLKRLPEISS----GNIGQLFLSGTAIEEL------PSSFELLLRLWLLDLSD 210
           L L+   +        +     ++ QLFL    ++           FE L  L +L L+ 
Sbjct: 431 LILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNH 489

Query: 211 CKRLKSLPSSLCKLKSLELLSLRGCSNLQRL 241
                        L SL        + L+ L
Sbjct: 490 NY-----------LNSLPPGVFSHLTALRGL 509

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 32/117 (27%), Positives = 41/117 (35%), Gaps = 8/117 (6%)

Query: 128 LWNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCS----KLKRLPEISSGNIGQ 182
             N   L IL+L  SK +  L    F  L  L EL L  C      LK     +   + +
Sbjct: 69  FRNLPNLRILDLGSSK-IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTR 127

Query: 183 LFLSGTAIEELP--SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSN 237
           L LS   I  L    SF  L  L  +D S  +        L  L+   L      +N
Sbjct: 128 LDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 44.4 bits (105), Expect = 6e-06
 Identities = 14/111 (12%), Positives = 39/111 (35%), Gaps = 19/111 (17%)

Query: 130 NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTA 189
           +  K+  ++ + S  +      +  L+++ ++ L  C                  +    
Sbjct: 59  DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHY----------------IEDGC 102

Query: 190 IEELPSSFELLLRLWLLDLSDCKRL--KSLPSSLCKLKSLELLSLRGCSNL 238
           +E L     L   +  +++  C  +  K +  +L   ++L+ L L     +
Sbjct: 103 LERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFRNLKYLFLSDLPGV 152

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 45.5 bits (107), Expect = 8e-06
 Identities = 34/217 (15%), Positives = 62/217 (28%), Gaps = 22/217 (10%)

Query: 44  DLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPL 103
             S+ + + L        R     +          +  V   +     E++ L       
Sbjct: 325 SDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPE-NKW 383

Query: 104 KSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSG-----SKSLKSLPAGIFNLEFL 158
             L        L  L      ++       +  +  +      SK L            +
Sbjct: 384 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADV 443

Query: 159 TELDLSGCSKLKRLPEISS-GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSL 217
             L L+    L  L  +     +  L LS   +  LP +   L  L +L  SD   L+++
Sbjct: 444 RVLHLAHK-DLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDN-ALENV 501

Query: 218 P--SSLCKLKSL-----------ELLSLRGCSNLQRL 241
              ++L +L+ L            +  L  C  L  L
Sbjct: 502 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLL 538

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 43.2 bits (101), Expect = 4e-05
 Identities = 30/117 (25%), Positives = 49/117 (41%), Gaps = 9/117 (7%)

Query: 122 NSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISS--GN 179
             +         + +L+L+  K L  L   +  L  +T LDLS   +L+ LP   +    
Sbjct: 431 LENSVLKMEYADVRVLHLA-HKDLTVLC-HLEQLLLVTHLDLSHN-RLRALPPALAALRC 487

Query: 180 IGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPS--SLCKLKSLELLSLRG 234
           +  L  S  A+E +      L RL  L L + + L+   +   L     L LL+L+G
Sbjct: 488 LEVLQASDNALENVDG-VANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQG 542

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 20/116 (17%), Positives = 48/116 (41%), Gaps = 6/116 (5%)

Query: 123 SDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCS-KLKRLPEISS-GNI 180
           +D+  +  +  +  L ++      +    I  L  L  L + G      ++P +S   ++
Sbjct: 57  TDLTGIEYAHNIKDLTINNIH-ATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSL 114

Query: 181 GQLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC 235
             L +S +A ++   +    L ++  +DLS    +  +   L  L  L+ L+++  
Sbjct: 115 TLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFD 169

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.6 bits (101), Expect = 3e-05
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 7/130 (5%)

Query: 113 EKLMFLEVPNSDIEQLWNS--VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLK 170
           +  +   +  S    +  +    L  + L+    +  L  GI     + +L ++      
Sbjct: 23  KAYLNGLLGQSSTANITEAQMNSLTYITLANIN-VTDLT-GIEYAHNIKDLTINNI-HAT 79

Query: 171 RLPEISS-GNIGQLFLSGTAI-EELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLE 228
               IS   N+ +L + G  +  +   +   L  L LLD+S      S+ + +  L  + 
Sbjct: 80  NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVN 139

Query: 229 LLSLRGCSNL 238
            + L     +
Sbjct: 140 SIDLSYNGAI 149

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 38.4 bits (90), Expect = 8e-04
 Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 2/92 (2%)

Query: 122 NSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISS-GNI 180
           +  I  L     L +L++S S    S+   I  L  +  +DLS    +  +  + +   +
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPEL 161

Query: 181 GQLFLSGTAIEELPSSFELLLRLWLLDLSDCK 212
             L +    + +     E   +L  L      
Sbjct: 162 KSLNIQFDGVHDY-RGIEDFPKLNQLYAFSQT 192

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 49/171 (28%), Positives = 72/171 (42%), Gaps = 37/171 (21%)

Query: 89  RFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-----KLVILNLSGSK 143
               V+YL   G  L  + +      L +L +  + ++ L N V      L  L L    
Sbjct: 61  YLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV-EN 119

Query: 144 SLKSLPAGIFN-LEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLR 202
            L+SLP G+F+ L  LT L+L+  ++L+ LP                       F+ L  
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAH-NQLQSLP--------------------KGVFDKLTN 158

Query: 203 LWLLDLSDCKRLKSLPSSLC-KLKSLELLSLRGCSN-LQRLP----DRLAS 247
           L  LDL    +L+SLP  +  KL  L+ L L    N L+ +P    DRL S
Sbjct: 159 LTELDL-SYNQLQSLPEGVFDKLTQLKDLRLY--QNQLKSVPDGVFDRLTS 206

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 38/205 (18%), Positives = 75/205 (36%), Gaps = 23/205 (11%)

Query: 36  EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLR-FAEVK 94
            +     L    V +      T  ++  +  +   +          +  +Q ++    V 
Sbjct: 24  AETIKDNLKKKSVTDAV----TQNELNSIDQIIANN--------SDIKSVQGIQYLPNVT 71

Query: 95  YLHWHGYPLKSLPSNHSAEKLMFLEVPN---SDIEQLWNSVKLVILNLSGSKSLKSLPAG 151
            L  +G  L  +    + + L +L +      D+  L +  KL  L+L  +  +  +  G
Sbjct: 72  KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNG-ISDIN-G 129

Query: 152 IFNLEFLTELDLSGCSKLKRLPEISS-GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSD 210
           + +L  L  L L    K+  +  +S    +  L L    I ++      L +L  L LS 
Sbjct: 130 LVHLPQLESLYLGNN-KITDITVLSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSK 187

Query: 211 CKRLKSLPSSLCKLKSLELLSLRGC 235
              +  L  +L  LK+L++L L   
Sbjct: 188 NH-ISDL-RALAGLKNLDVLELFSQ 210

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.4 bits (105), Expect = 2e-05
 Identities = 38/197 (19%), Positives = 62/197 (31%), Gaps = 51/197 (25%)

Query: 43  LDLSKVKEIPLNPNT-FAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFA---EVKYLHW 98
           LDLS      L       ++  L  L          +   ++ +    F     ++YL  
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLTNLHSLLL--------SHNHLNFISSEAFVPVPNLRYLDL 95

Query: 99  HGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIF-NLEF 157
               L +L                       +   L +L L  +  +  +    F ++  
Sbjct: 96  SSNHLHTLDEFL-----------------FSDLQALEVLLLYNNH-IVVVDRNAFEDMAQ 137

Query: 158 LTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSL 217
           L +L LS   ++ R P        +L                L +L LLDLS   +LK L
Sbjct: 138 LQKLYLSQN-QISRFPV-------ELI----------KDGNKLPKLMLLDLSS-NKLKKL 178

Query: 218 P-SSLCKLKSLELLSLR 233
           P + L KL +     L 
Sbjct: 179 PLTDLQKLPAWVKNGLY 195

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 25/108 (23%)

Query: 142 SKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSG-------NIGQLFLSGTAIEELP 194
            + L ++P  + +  +   LDLS       L  + +        N+  L LS   +  + 
Sbjct: 27  KQQLPNVPQSLPS--YTALLDLSHN----NLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS 80

Query: 195 S-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRL 241
           S +F  +  L  LDLS    L +L                    L+ L
Sbjct: 81  SEAFVPVPNLRYLDLSSNH-LHTLDEF----------LFSDLQALEVL 117

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 25/138 (18%), Positives = 48/138 (34%), Gaps = 35/138 (25%)

Query: 142 SKSLKSLPAGIF-----------------------NLEFLTELDLSGCSKLKRLPE---I 175
           ++ L  +P  I                         L  L +++ S   K+  + E    
Sbjct: 20  NQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNN-KITDIEEGAFE 78

Query: 176 SSGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDCKRLKSLPS-SLCKLKSLELLSLR 233
            +  + ++ L+   +E +    F+ L  L  L L   + +  + + S   L S+ LLSL 
Sbjct: 79  GASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSFIGLSSVRLLSLY 137

Query: 234 GCSNLQRLP----DRLAS 247
               +  +     D L S
Sbjct: 138 DN-QITTVAPGAFDTLHS 154

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 38/114 (33%), Positives = 59/114 (51%), Gaps = 13/114 (11%)

Query: 142 SKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSG--NIGQLFLSGTAIEELPS-SFE 198
           +K LK LP GI     +TEL L G ++   +P+  S   ++  + LS   I  L + SF 
Sbjct: 19  NKGLKVLPKGIP--RDVTELYLDG-NQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFS 75

Query: 199 LLLRLWLLDLSDCKRLKSLPSSLC-KLKSLELLSLRGCSNLQRLP----DRLAS 247
            + +L  L LS   RL+ +P      LKSL LLSL G +++  +P    + L++
Sbjct: 76  NMTQLLTLILSY-NRLRCIPPRTFDGLKSLRLLSLHG-NDISVVPEGAFNDLSA 127

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.7 bits (101), Expect = 3e-05
 Identities = 32/153 (20%), Positives = 58/153 (37%), Gaps = 35/153 (22%)

Query: 91  AEVKYLHWHGYPLKSLPSN--HSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSK 143
             +  +      +K +P       +KL  +++ N+ I +L          L  L L G+K
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 144 SLKSLPAGIF-NLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLR 202
            +  LP  +F  L  L  L L+  +K+  L                       +F+ L  
Sbjct: 92  -ITELPKSLFEGLFSLQLLLLNA-NKINCLR--------------------VDAFQDLHN 129

Query: 203 LWLLDLSDCKRLKSLP----SSLCKLKSLELLS 231
           L LL L D  +L+++     S L  ++++ L  
Sbjct: 130 LNLLSLYD-NKLQTIAKGTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 32/129 (24%), Positives = 48/129 (37%), Gaps = 30/129 (23%)

Query: 142 SKSLKSLPAGIF----------------------NLEFLTELDLSGCSKLKRLPE---IS 176
            K L  +P  +                         + L  +DLS  +++  L       
Sbjct: 20  GKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN-NQISELAPDAFQG 78

Query: 177 SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDCKRLKSLPS-SLCKLKSLELLSLRG 234
             ++  L L G  I ELP S FE L  L LL L+   ++  L   +   L +L LLSL  
Sbjct: 79  LRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYD 137

Query: 235 CSNLQRLPD 243
            + LQ +  
Sbjct: 138 -NKLQTIAK 145

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.2 bits (99), Expect = 7e-05
 Identities = 38/140 (27%), Positives = 55/140 (39%), Gaps = 20/140 (14%)

Query: 115 LMFLEVPNSDIEQLWNSVKLVILNLSGSKSL--KSLPAGIFNLEFLTELDLSGCSK---- 168
           L  L + +  +  L  +  LV LNLSG       +L   + +   L EL+LS C      
Sbjct: 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184

Query: 169 -LKRLPEISSGNIGQLFLSG-------TAIEELPSSFELLLRLWLLDLSDCKRL--KSLP 218
            ++      S  I QL LSG       + +  L      L+ L   DLSD   L      
Sbjct: 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL---DLSDSVMLKNDCF- 240

Query: 219 SSLCKLKSLELLSLRGCSNL 238
               +L  L+ LSL  C ++
Sbjct: 241 QEFFQLNYLQHLSLSRCYDI 260

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 41.9 bits (99), Expect = 8e-05
 Identities = 28/138 (20%), Positives = 55/138 (39%), Gaps = 11/138 (7%)

Query: 102 PLKSLPSNHSAEKLMFLEVPN---SDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFL 158
           P+  +  +      +   +     +D+        +   N   S  ++SL  G+     L
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSN-IQSLA-GMQFFTNL 65

Query: 159 TELDLSGCSKLKRLPEISS-GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSL 217
            EL LS   ++  L  +     + +L ++   ++ L  +      L  L L + + L+  
Sbjct: 66  KELHLSHN-QISDLSPLKDLTKLEELSVNRNRLKNL--NGIPSACLSRLFLDNNE-LRDT 121

Query: 218 PSSLCKLKSLELLSLRGC 235
             SL  LK+LE+LS+R  
Sbjct: 122 -DSLIHLKNLEILSIRNN 138

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 40.4 bits (95), Expect = 2e-04
 Identities = 25/128 (19%), Positives = 43/128 (33%), Gaps = 13/128 (10%)

Query: 123 SDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISS-GNIG 181
           + +         V  NL   +S+  L      L  +   +      ++ L  +    N+ 
Sbjct: 10  NQVFPDPGLANAVKQNLGK-QSVTDLV-SQKELSGVQNFNGDNS-NIQSLAGMQFFTNLK 66

Query: 182 QLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLEL--------LSLR 233
           +L LS   I +L S  + L +L  L ++  +           L  L L         SL 
Sbjct: 67  ELHLSHNQISDL-SPLKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLI 125

Query: 234 GCSNLQRL 241
              NL+ L
Sbjct: 126 HLKNLEIL 133

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 38/158 (24%), Positives = 58/158 (36%), Gaps = 17/158 (10%)

Query: 94  KYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQL--WNSVKLVILNLSGSKSLKSLPAG 151
            YL      L +L       KL +L    + + +L    +  L  LN + +  L  +   
Sbjct: 88  TYLACDSNKLTNLDVTPL-TKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNT-LTEIDVS 145

Query: 152 IFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELP-SSFELLLRLWL----- 205
             +   LTELD     K+ +L       +  L  S   I EL  S  +LL RL       
Sbjct: 146 --HNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNI 203

Query: 206 --LDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRL 241
             LDL+   +L  L  S  KL  ++   +   + L   
Sbjct: 204 TKLDLNQNIQLTFLDCSSNKLTEID---VTPLTQLTYF 238

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 9/115 (7%)

Query: 128 LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSG 187
           +    KL  L+   +  L  +   + +   L      GC K+K L    +  +  L    
Sbjct: 250 VSTLSKLTTLHCIQTD-LLEID--LTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA 306

Query: 188 TAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242
             I EL        +L  L L++ + L  L   +     L+ LS     ++Q   
Sbjct: 307 AGITELD--LSQNPKLVYLYLNNTE-LTELD--VSHNTKLKSLSCVNA-HIQDFS 355

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 40.0 bits (94), Expect = 3e-04
 Identities = 34/115 (29%), Positives = 52/115 (45%), Gaps = 14/115 (12%)

Query: 142 SKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSS-FELL 200
           S+   S+P GI       +L+ +    L         ++ QL+L G  ++ LP+  F  L
Sbjct: 16  SQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKL 75

Query: 201 LRLWLLDLSDCKRLKSLPS----SLCKLKSLELLSLRGCSNLQRLP----DRLAS 247
             L  L+LS   +L+SLP+     L +LK L L      + LQ LP    D+L  
Sbjct: 76  TSLTYLNLS-TNQLQSLPNGVFDKLTQLKELAL----NTNQLQSLPDGVFDKLTQ 125

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 24/116 (20%), Positives = 48/116 (41%), Gaps = 15/116 (12%)

Query: 142 SKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI----SSGNIGQLFLSGTAIEELPSS- 196
            + LK +P  I      TEL L+  ++L R+          ++ +L L    +  +  + 
Sbjct: 17  GRGLKEIPRDIP--LHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNA 73

Query: 197 FELLLRLWLLDLSDCKRLKSLPSSLC-KLKSLELLSLRGCSNLQRLP----DRLAS 247
           FE    +  L L + K +K + + +   L  L+ L+L   + +  +     + L S
Sbjct: 74  FEGASHIQELQLGENK-IKEISNKMFLGLHQLKTLNLYD-NQISCVMPGSFEHLNS 127

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 39.2 bits (92), Expect = 4e-04
 Identities = 41/115 (35%), Positives = 61/115 (53%), Gaps = 14/115 (12%)

Query: 142 SKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI---SSGNIGQLFLSGTAIEELPSS-F 197
           SK L S+P GI +    T L+L   +KL+ LP         + +L LS   I+ LP   F
Sbjct: 16  SKGLTSVPTGIPSS--ATRLELES-NKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVF 72

Query: 198 ELLLRLWLLDLSDCKRLKSLPSSLC-KLKSLELLSLRGCSNLQRLP----DRLAS 247
           + L +L +L L + K L+SLP+ +  KL  L+ L+L   + L+ +P    DRL S
Sbjct: 73  DKLTKLTILYLHENK-LQSLPNGVFDKLTQLKELALDT-NQLKSVPDGIFDRLTS 125

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 7/97 (7%)

Query: 144 SLKSLPAGIFNLEF-----LTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFE 198
           SL SL +  ++        +  L+LS       +       +  L L    I  +P    
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVT 470

Query: 199 LLLRLWLLDLSDCKRLKSLP-SSLCKLKSLELLSLRG 234
            L  L  L+++   +LKS+P     +L SL+ + L  
Sbjct: 471 HLQALQELNVAS-NQLKSVPDGVFDRLTSLQYIWLHD 506

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 39.5 bits (92), Expect = 7e-04
 Identities = 28/141 (19%), Positives = 57/141 (40%), Gaps = 17/141 (12%)

Query: 43  LDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYP 102
           L+ ++           + +++L+ L          N  K      L    +  L      
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQR------NGLKNFFKVALMTKNMSSLETLDVS 411

Query: 103 LKSLPS---NHSAEKLMFLEVPNSDIEQLWNSV------KLVILNLSGSKSLKSLPAGIF 153
           L SL S   + +      + V N     L  SV      K+ +L+L  ++ + S+P  + 
Sbjct: 412 LNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNR-IMSIPKDVT 470

Query: 154 NLEFLTELDLSGCSKLKRLPE 174
           +L+ L EL+++  ++LK +P+
Sbjct: 471 HLQALQELNVAS-NQLKSVPD 490

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	251
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.92
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.89
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.89
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.89
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.88
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.88
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.88
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.88
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.87
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.87
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.87
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.86
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.86
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.86
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.86
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.86
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.85
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.85
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.85
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.85
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.84
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.84
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.84
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.84
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.84
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.84
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.84
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.83
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.83
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.83
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.83
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.83
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.83
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.82
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.82
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.82
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.82
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.82
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.82
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.81
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.81
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.81
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.8
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.8
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.8
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.8
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.8
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.8
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.8
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.79
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.79
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.79
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.79
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.79
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.79
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.78
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.78
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.77
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.77
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.76
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.75
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.72
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.72
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.72
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.71
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.71
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.7
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.7
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.69
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.68
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.68
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.67
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.67
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.67
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.65
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.65
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.64
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.64
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.62
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.61
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.61
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.6
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.6
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.57
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.57
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.54
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.5
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.44
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.43
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.43
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.41
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.37
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.32
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.25
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.21
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.2
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.12
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.01
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.9
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.89
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.73
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.64
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	98.61
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.43
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.36
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.3
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.19
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.81
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	97.34
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.32
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	97.32
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.27
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.09
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.99
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.92
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.66
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.65
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.28

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.93  E-value=3.4e-25  Score=183.74  Aligned_cols=207  Identities=26%  Similarity=0.307  Sum_probs=172.1

Q ss_pred             CCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-Cc
Q 025516           34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SA  112 (251)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l  112 (251)
                      ....+..+.+..+.+..+   |..+..+++|++|++++|.+. ..+..+..+.+|+.++++.|.+     ..+|..+ .+
T Consensus        79 ~~~~l~~L~L~~n~l~~l---p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l-----~~lp~~l~~l  149 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQF---PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPL-----RALPASIASL  149 (328)
T ss_dssp             TSTTCCEEEEESSCCSSC---CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCC-----CCCCGGGGGC
T ss_pred             cccceeEEEccCCCchhc---ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCcc-----ccCcHHHhcC
Confidence            346777888887777643   556788999999999999998 5666777777766666665554     4677665 68


Q ss_pred             CCceEeecCCCccc-ccc-------------CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-c
Q 025516          113 EKLMFLEVPNSDIE-QLW-------------NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-S  177 (251)
Q Consensus       113 ~~L~~L~l~~n~i~-~l~-------------~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~  177 (251)
                      ++|++|++++|++. .++             .+++|++|++++|.+. .+|..++++++|++|++++|.+.+..+... +
T Consensus       150 ~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l  228 (328)
T 4fcg_A          150 NRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHL  228 (328)
T ss_dssp             TTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGC
T ss_pred             cCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccC
Confidence            99999999997653 232             3889999999999855 889889999999999999998876444333 8


Q ss_pred             CCccEEEccccCCc-cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhccc
Q 025516          178 GNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYRR  250 (251)
Q Consensus       178 ~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~~  250 (251)
                      ++|++|++++|.+. .+|..++.+++|+.|++++|.+.+.+|..++.+++|++|++++|++.+.+|++++++++
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~  302 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA  302 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCT
T ss_pred             CCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccC
Confidence            99999999998876 78888999999999999999999999999999999999999999999999999998764

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=1.8e-24  Score=178.28  Aligned_cols=204  Identities=18%  Similarity=0.240  Sum_probs=136.0

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeec-ccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcC
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYS-SSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAE  113 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~  113 (251)
                      .+++.+.+..+.+......|..|.++++|++|++++ |.+.+..+..+..+.+|+.++++.|.+.+    .+|..+ .++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~----~~p~~~~~l~  125 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG----AIPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE----ECCGGGGGCT
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC----cCCHHHhCCC
Confidence            567777777766653213477899999999999994 88888888888889888888888888775    455444 578


Q ss_pred             CceEeecCCCccc-----cccCcCCccEEEcCCCcCCccccCccccCC-CccEEecCCCCCCCCCCccc-cCCccEEEcc
Q 025516          114 KLMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSLPAGIFNLE-FLTELDLSGCSKLKRLPEIS-SGNIGQLFLS  186 (251)
Q Consensus       114 ~L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~  186 (251)
                      +|++|++++|.+.     .+..+++|++|++++|.+.+.+|..++.++ +|++|++++|.+.+..|... ...|++|+++
T Consensus       126 ~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls  205 (313)
T 1ogq_A          126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS  205 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC
T ss_pred             CCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECc
Confidence            8888888888876     245677888888888877667787777776 78888888877665554433 1125555555


Q ss_pred             ccCCc-cCCcc-----------------------cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          187 GTAIE-ELPSS-----------------------FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       187 ~n~i~-~lp~~-----------------------~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      +|.++ ..|..                       +..+++|+.|++++|.+.+.+|..++.+++|++|++++|++.+.+|
T Consensus       206 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip  285 (313)
T 1ogq_A          206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             CCcccCcCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCC
Confidence            55554 23333                       4444555555555555544555555555555555555555555555


Q ss_pred             h
Q 025516          243 D  243 (251)
Q Consensus       243 ~  243 (251)
                      .
T Consensus       286 ~  286 (313)
T 1ogq_A          286 Q  286 (313)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.92  E-value=5.3e-25  Score=181.47  Aligned_cols=202  Identities=18%  Similarity=0.162  Sum_probs=143.6

Q ss_pred             CCceEEEEeec-CCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-Cc
Q 025516           35 TEKIEGICLDL-SKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SA  112 (251)
Q Consensus        35 ~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l  112 (251)
                      ...++.+.+.. +.+.  ...|..|+++++|++|++++|.+.+..+..+..+.+++.++++.|.+.+    .+|..+ .+
T Consensus        75 l~~L~~L~L~~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l  148 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLV--GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG----TLPPSISSL  148 (313)
T ss_dssp             CTTCSEEEEEEETTEE--SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES----CCCGGGGGC
T ss_pred             CCCCCeeeCCCCCccc--ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCC----cCChHHhcC
Confidence            44556666652 4433  2336678888888888888888877677777777777777777766664    233332 34


Q ss_pred             CCceEeecCCCccc-----cccCcC-C-----------------------ccEEEcCCCcCCccccCccccCCCccEEec
Q 025516          113 EKLMFLEVPNSDIE-----QLWNSV-K-----------------------LVILNLSGSKSLKSLPAGIFNLEFLTELDL  163 (251)
Q Consensus       113 ~~L~~L~l~~n~i~-----~l~~~~-~-----------------------L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  163 (251)
                      ++|++|++++|++.     .+..+. +                       |++|++++|.+.+..|..++.+++|++|++
T Consensus       149 ~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  228 (313)
T 1ogq_A          149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL  228 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred             CCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEEC
Confidence            55555555555543     122232 3                       555555555555555666677778888888


Q ss_pred             CCCCCCCCCCccc-cCCccEEEccccCCc-cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCC
Q 025516          164 SGCSKLKRLPEIS-SGNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRL  241 (251)
Q Consensus       164 ~~n~~~~~~~~~~-~~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~  241 (251)
                      ++|.+.+..+... +++|++|++++|.++ .+|..+..+++|+.|++++|++.+.+|.. +.+++|+.+++++|+.+...
T Consensus       229 ~~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSSEEEST
T ss_pred             CCCceeeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCCCccCC
Confidence            8887776666543 789999999999998 78999999999999999999999899886 89999999999999866555


Q ss_pred             Ch
Q 025516          242 PD  243 (251)
Q Consensus       242 p~  243 (251)
                      |.
T Consensus       308 p~  309 (313)
T 1ogq_A          308 PL  309 (313)
T ss_dssp             TS
T ss_pred             CC
Confidence            53

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.92  E-value=2.2e-24  Score=197.52  Aligned_cols=191  Identities=21%  Similarity=0.320  Sum_probs=116.7

Q ss_pred             chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccc-----cc
Q 025516           55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIE-----QL  128 (251)
Q Consensus        55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~-----~l  128 (251)
                      |..|+++++|+.|++++|.+.+..+..+..+..++.++++.|.+.+    .+|..+ .+++|++|++++|++.     .+
T Consensus       435 p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~  510 (768)
T 3rgz_A          435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG----EIPSGLSNCTNLNWISLSNNRLTGEIPKWI  510 (768)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred             cHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccC----cCCHHHhcCCCCCEEEccCCccCCcCChHH
Confidence            4444555555555555555544444444444444444444443333    334333 4667777777777664     24


Q ss_pred             cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--------------------------------
Q 025516          129 WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--------------------------------  176 (251)
Q Consensus       129 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--------------------------------  176 (251)
                      ..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+.+|...                                
T Consensus       511 ~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  590 (768)
T 3rgz_A          511 GRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGA  590 (768)
T ss_dssp             GGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSS
T ss_pred             hcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccc
Confidence            456667777777777666677767777777777777766554444211                                


Q ss_pred             ----------------------------------------cCCccEEEccccCCc-cCCcccccCccCCEEeccCCcCCc
Q 025516          177 ----------------------------------------SGNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSDCKRLK  215 (251)
Q Consensus       177 ----------------------------------------~~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~  215 (251)
                                                              ++.|+.|++++|+++ .+|..++.+++|+.|++++|.+.+
T Consensus       591 ~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g  670 (768)
T 3rgz_A          591 GNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISG  670 (768)
T ss_dssp             EEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCS
T ss_pred             ccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCC
Confidence                                                    235667777777776 566677777777777777777777


Q ss_pred             cCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          216 SLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       216 ~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      .+|..++.+++|+.|++++|++.+.+|..++.++
T Consensus       671 ~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~  704 (768)
T 3rgz_A          671 SIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALT  704 (768)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCC
T ss_pred             CCChHHhCCCCCCEEECCCCcccCcCChHHhCCC
Confidence            7777777777777777777777777777666554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.91  E-value=5.1e-24  Score=195.11  Aligned_cols=204  Identities=21%  Similarity=0.232  Sum_probs=172.8

Q ss_pred             CCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcC
Q 025516           35 TEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAE  113 (251)
Q Consensus        35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~  113 (251)
                      ..+++.+.+..+.+.  ...|..|..+++|+.|++++|.+.+..+..+..+..++.++++.|.+.+    .+|..+ .++
T Consensus       441 l~~L~~L~L~~n~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~----~~p~~~~~l~  514 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLE--GEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTG----EIPKWIGRLE  514 (768)
T ss_dssp             CTTCCEEECCSSCCC--SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCS----CCCGGGGGCT
T ss_pred             CCCCCEEECCCCccc--CcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCC----cCChHHhcCC
Confidence            344555555554433  3447889999999999999999999888888888888888887777765    566555 689


Q ss_pred             CceEeecCCCccc-----cccCcCCccEEEcCCCcCCccccCcc------------------------------------
Q 025516          114 KLMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSLPAGI------------------------------------  152 (251)
Q Consensus       114 ~L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~~~~~------------------------------------  152 (251)
                      +|++|++++|++.     .+..+++|++|++++|.+.+.+|..+                                    
T Consensus       515 ~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  594 (768)
T 3rgz_A          515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL  594 (768)
T ss_dssp             TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEE
T ss_pred             CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhcccccccccccccccccccccccccc
Confidence            9999999999986     46678899999999998776666433                                    


Q ss_pred             ----------------------------------ccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCc-cCCc
Q 025516          153 ----------------------------------FNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE-ELPS  195 (251)
Q Consensus       153 ----------------------------------~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~-~lp~  195 (251)
                                                        +.+++|++|++++|.+.+.+|..+  ++.|+.|++++|.++ .+|.
T Consensus       595 ~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~  674 (768)
T 3rgz_A          595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD  674 (768)
T ss_dssp             ECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCG
T ss_pred             ccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCCh
Confidence                                              335779999999999999999765  899999999999999 8999


Q ss_pred             ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChh
Q 025516          196 SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR  244 (251)
Q Consensus       196 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~  244 (251)
                      .++.+++|+.|++++|++.+.+|..++.+++|++|++++|++.|.+|..
T Consensus       675 ~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM  723 (768)
T ss_dssp             GGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS
T ss_pred             HHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            9999999999999999999999999999999999999999999999975

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.90  E-value=2.7e-23  Score=172.33  Aligned_cols=183  Identities=22%  Similarity=0.257  Sum_probs=156.6

Q ss_pred             cCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccccc----cCcCCc
Q 025516           60 KMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQL----WNSVKL  134 (251)
Q Consensus        60 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~l----~~~~~L  134 (251)
                      ...+++.|++++|.+.. .+..+..+.+++.++++.     +.+..+|..+ .+++|++|++++|++..+    ..+++|
T Consensus        79 ~~~~l~~L~L~~n~l~~-lp~~l~~l~~L~~L~L~~-----n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L  152 (328)
T 4fcg_A           79 TQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDA-----AGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRL  152 (328)
T ss_dssp             TSTTCCEEEEESSCCSS-CCSCGGGGTTCSEEEEES-----SCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTC
T ss_pred             cccceeEEEccCCCchh-cChhhhhCCCCCEEECCC-----CCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCC
Confidence            45899999999999883 455566666665555554     4555677765 689999999999998754    467899


Q ss_pred             cEEEcCCCcCCccccCcccc---------CCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccC
Q 025516          135 VILNLSGSKSLKSLPAGIFN---------LEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRL  203 (251)
Q Consensus       135 ~~L~l~~n~~~~~~~~~~~~---------l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L  203 (251)
                      ++|++++|...+.+|..++.         +++|++|++++|.+. .+|...  +++|++|++++|.++.+|..++.+++|
T Consensus       153 ~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L  231 (328)
T 4fcg_A          153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKL  231 (328)
T ss_dssp             CEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTC
T ss_pred             CEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCC
Confidence            99999999889999987764         999999999999876 666544  889999999999999999999999999


Q ss_pred             CEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          204 WLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       204 ~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      +.|++++|.+.+.+|..++.+++|++|++++|+..+.+|..++.++
T Consensus       232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~  277 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLT  277 (328)
T ss_dssp             CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCT
T ss_pred             CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCC
Confidence            9999999999999999999999999999999999999999887765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.89  E-value=1.4e-22  Score=164.56  Aligned_cols=202  Identities=19%  Similarity=0.181  Sum_probs=154.1

Q ss_pred             CCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCC-CCCC-Cc
Q 025516           35 TEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSL-PSNH-SA  112 (251)
Q Consensus        35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~-~~~~-~l  112 (251)
                      ..+++.+.+..+.+..+  .+..|..+++|++|++++|.+.+..+..+..+..|+.++++.|.    .++.+ +..+ .+
T Consensus        31 ~~~l~~L~l~~n~i~~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~----~l~~~~~~~~~~l  104 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHV--PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA----QLRSVDPATFHGL  104 (285)
T ss_dssp             CTTCSEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT----TCCCCCTTTTTTC
T ss_pred             CCCceEEEeeCCcCCcc--CHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC----CccccCHHHhcCC
Confidence            34566777766665544  36678899999999999998887777777777776666665554    03334 2333 68


Q ss_pred             CCceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEc
Q 025516          113 EKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFL  185 (251)
Q Consensus       113 ~~L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l  185 (251)
                      ++|++|++++|++..+     ..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+  +++|++|++
T Consensus       105 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  184 (285)
T 1ozn_A          105 GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLL  184 (285)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEEC
Confidence            8999999999988643     457789999999988666555668889999999999997665444323  789999999


Q ss_pred             cccCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          186 SGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       186 ~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      ++|.++.+ |..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++....+
T Consensus       185 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          185 HQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             CCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            99999865 6678889999999999999877666778999999999999988775544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.89  E-value=3.3e-22  Score=172.65  Aligned_cols=204  Identities=22%  Similarity=0.197  Sum_probs=159.5

Q ss_pred             ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCC
Q 025516           37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEK  114 (251)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~  114 (251)
                      .++.+.+..+.+..  +.+..|.++++|+.|++++|.+.+..+..|..+.+|+.++|+.|.+.     .++.. + .+++
T Consensus        76 ~l~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~  148 (452)
T 3zyi_A           76 NTRYLNLMENNIQM--IQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-----VIPSGAFEYLSK  148 (452)
T ss_dssp             TCSEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-----BCCTTTSSSCTT
T ss_pred             CccEEECcCCcCce--ECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-----ccChhhhcccCC
Confidence            45555555555443  44778999999999999999998877778888777776666666554     45443 3 5899


Q ss_pred             ceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccC-ccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccc
Q 025516          115 LMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPA-GIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSG  187 (251)
Q Consensus       115 L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~  187 (251)
                      |++|++++|++..+     ..+++|++|++++|...+.++. .+.++++|++|++++|.+.. +|... +++|++|++++
T Consensus       149 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~l~~L~~L~Ls~  227 (452)
T 3zyi_A          149 LRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-MPNLTPLVGLEELEMSG  227 (452)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-CCCCTTCTTCCEEECTT
T ss_pred             CCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-cccccccccccEEECcC
Confidence            99999999998754     4578999999999777777665 57789999999999997654 45444 88999999999


Q ss_pred             cCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          188 TAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       188 n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      |.++.+ |..+.++++|+.|++++|++.+..|..+..+++|+.|++++|.+.+..+..++.+
T Consensus       228 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          228 NHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             SCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             CcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence            999976 5578899999999999999888888889999999999999987765444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.89  E-value=3.6e-22  Score=171.82  Aligned_cols=204  Identities=21%  Similarity=0.227  Sum_probs=158.2

Q ss_pred             ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCC
Q 025516           37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEK  114 (251)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~  114 (251)
                      .++.+.+..+.+..+  .+..|.++++|+.|++++|.+....+..|..+.+|+.++|+.|.+.     .++.. + .+++
T Consensus        65 ~l~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~  137 (440)
T 3zyj_A           65 NTRLLNLHENQIQII--KVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-----TIPNGAFVYLSK  137 (440)
T ss_dssp             TCSEEECCSCCCCEE--CTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-----SCCTTTSCSCSS
T ss_pred             CCcEEEccCCcCCee--CHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-----eeCHhHhhcccc
Confidence            345555655555443  4678999999999999999998877777877777766666655554     45542 3 6899


Q ss_pred             ceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccC-ccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccc
Q 025516          115 LMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPA-GIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSG  187 (251)
Q Consensus       115 L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~  187 (251)
                      |++|++++|++..     +..+++|++|++++|...+.++. .+.++++|++|++++|.+. .+|... +++|++|++++
T Consensus       138 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~  216 (440)
T 3zyj_A          138 LKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSG  216 (440)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTT
T ss_pred             CceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCC
Confidence            9999999999875     44578999999999776776665 5778999999999999765 455544 78999999999


Q ss_pred             cCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          188 TAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       188 n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      |.++.+ |..+.++++|+.|++++|++....+..+..+++|+.|++++|++.+..+..++.+
T Consensus       217 N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  278 (440)
T 3zyj_A          217 NHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL  278 (440)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred             CccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence            999876 5678899999999999999888888889999999999999987775444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.88  E-value=6.4e-23  Score=169.25  Aligned_cols=209  Identities=15%  Similarity=0.131  Sum_probs=161.4

Q ss_pred             CCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeecc-------------
Q 025516           34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG-------------  100 (251)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~-------------  100 (251)
                      ...+++.+.+..+.+..  +.+..|.++++|+.|++++|.+.+..+  +..+.+++.++++.|.+.+             
T Consensus        32 ~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~~~~~L~~L~l~  107 (317)
T 3o53_A           32 SAWNVKELDLSGNPLSQ--ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAA  107 (317)
T ss_dssp             TGGGCSEEECTTSCCCC--CCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred             cCCCCCEEECcCCccCc--CCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCccccccCCCCcCEEECC
Confidence            45577777777766554  447789999999999999998876443  6677777777777666543             


Q ss_pred             -CCCCCCCCCCCcCCceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccCccc-cCCCccEEecCCCCCCCCCC
Q 025516          101 -YPLKSLPSNHSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLP  173 (251)
Q Consensus       101 -~~~~~~~~~~~l~~L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~  173 (251)
                       +.+..++.. .+++|++|++++|++..+     ..+++|++|++++|.+.+..+..+. .+++|++|++++|.+....+
T Consensus       108 ~n~l~~~~~~-~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  186 (317)
T 3o53_A          108 NNNISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG  186 (317)
T ss_dssp             SSCCSEEEEC-CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred             CCccCCcCcc-ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccccc
Confidence             333333221 357789999999988754     3467899999999987776666664 68999999999998765533


Q ss_pred             ccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC-CCCChhhhhc
Q 025516          174 EISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL-QRLPDRLASY  248 (251)
Q Consensus       174 ~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~-~~~p~~l~~l  248 (251)
                      ...+++|++|++++|.++.+|..+..+++|+.|++++|++. .+|..+..+++|+.|++++|++. +.+|.+++.+
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~  261 (317)
T 3o53_A          187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (317)
T ss_dssp             CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTC
T ss_pred             ccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcc
Confidence            44488999999999999999888999999999999999876 57888999999999999999887 6666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.88  E-value=1.1e-22  Score=166.82  Aligned_cols=202  Identities=21%  Similarity=0.246  Sum_probs=108.7

Q ss_pred             ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCC--ccccccCCcceecceeEEe-----------------
Q 025516           37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGEN--RCKVSHLQDLRFAEVKYLH-----------------   97 (251)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~--~~~l~~l~~l~~l~L~~~~-----------------   97 (251)
                      .++.+.+..+.+.  .+.+..|.++++|+.|++++|.+....  +..+..+.+++.++++.|.                 
T Consensus        29 ~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L  106 (306)
T 2z66_A           29 SATRLELESNKLQ--SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL  106 (306)
T ss_dssp             TCCEEECCSSCCC--CCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEE
T ss_pred             CCCEEECCCCccC--ccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEE
Confidence            4555555555444  233445666677777777766655321  1222223333333332222                 


Q ss_pred             -eccCCCCCCCC---CCCcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCc-cccCccccCCCccEEecCCCC
Q 025516           98 -WHGYPLKSLPS---NHSAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLK-SLPAGIFNLEFLTELDLSGCS  167 (251)
Q Consensus        98 -l~~~~~~~~~~---~~~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~  167 (251)
                       ++++.+..++.   ...+++|++|++++|.+..     +..+++|++|++++|.+.+ ..|..++.+++|++|++++|.
T Consensus       107 ~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~  186 (306)
T 2z66_A          107 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  186 (306)
T ss_dssp             ECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             ECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCC
Confidence             22222222222   1145666666666666542     3345566666666665444 355556666666666666666


Q ss_pred             CCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCC-CCCEEeccCCcCCCC
Q 025516          168 KLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLK-SLELLSLRGCSNLQR  240 (251)
Q Consensus       168 ~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~  240 (251)
                      +.+..+..+  +++|++|++++|.++.++. .+..+++|+.|++++|++.+..|..+..++ +|++|++++|++.+.
T Consensus       187 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          187 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             cCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            554444332  5666666666666665544 455666666666666666666666666663 666666666665543

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.88  E-value=1.6e-21  Score=161.57  Aligned_cols=202  Identities=17%  Similarity=0.198  Sum_probs=128.5

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL  115 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L  115 (251)
                      ..++.+.+..+.+.  .+.+..|.++++|++|++++|.+.+..+..+..+.+|+.++++.|.+     +.+|.... ++|
T Consensus        52 ~~l~~L~L~~n~i~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l-----~~l~~~~~-~~L  123 (330)
T 1xku_A           52 PDTALLDLQNNKIT--EIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-----KELPEKMP-KTL  123 (330)
T ss_dssp             TTCCEEECCSSCCC--CBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCC-----SBCCSSCC-TTC
T ss_pred             CCCeEEECCCCcCC--EeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcC-----CccChhhc-ccc
Confidence            34555555555544  34466789999999999999999887777787777766666655544     44554432 678


Q ss_pred             eEeecCCCcccc-----ccCcCCccEEEcCCCcCCc--cccCccccCCCccEEecCCCCCCCCCCccccCCccEEEcccc
Q 025516          116 MFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLK--SLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGT  188 (251)
Q Consensus       116 ~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n  188 (251)
                      ++|++++|++..     +..+++|++|++++|.+..  ..+..++++++|++|++++|.+. .+|....++|++|++++|
T Consensus       124 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~n  202 (330)
T 1xku_A          124 QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGN  202 (330)
T ss_dssp             CEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTTS
T ss_pred             cEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccccccCCEEECCCC
Confidence            888888887764     3456778888888776542  45566677777777777777643 344433456666666666


Q ss_pred             CCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhh
Q 025516          189 AIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS  247 (251)
Q Consensus       189 ~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~  247 (251)
                      .++.+ |..+..+++|+.|++++|.+.+..+..++.+++|++|++++|.+. .+|.+++.
T Consensus       203 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  261 (330)
T 1xku_A          203 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLAD  261 (330)
T ss_dssp             CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTT
T ss_pred             cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhcc
Confidence            66544 344555666666666666555544445555566666666655433 45555443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.88  E-value=1.9e-22  Score=175.66  Aligned_cols=209  Identities=15%  Similarity=0.131  Sum_probs=162.6

Q ss_pred             CCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeecc-------------
Q 025516           34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG-------------  100 (251)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~-------------  100 (251)
                      ..++++.+.+..+.+..  +.+..|+.+++|++|++++|.+.+..+  +..+.+|+.++|++|.+.+             
T Consensus        32 ~~~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~~~~L~~L~L~  107 (487)
T 3oja_A           32 SAWNVKELDLSGNPLSQ--ISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPSIETLHAA  107 (487)
T ss_dssp             TGGGCCEEECCSSCCCC--CCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEECTTCCEEECC
T ss_pred             cCCCccEEEeeCCcCCC--CCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCCCCCcCEEECc
Confidence            34478888787776654  457899999999999999999886544  7777777777777666543             


Q ss_pred             -CCCCCCCCCCCcCCceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccCccc-cCCCccEEecCCCCCCCCCC
Q 025516          101 -YPLKSLPSNHSAEKLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIF-NLEFLTELDLSGCSKLKRLP  173 (251)
Q Consensus       101 -~~~~~~~~~~~l~~L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~l~~n~~~~~~~  173 (251)
                       +.+..++.. .+++|+.|++++|.+..+     ..+++|++|++++|.+.+..|..+. .+++|++|++++|.+.+..+
T Consensus       108 ~N~l~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~  186 (487)
T 3oja_A          108 NNNISRVSCS-RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG  186 (487)
T ss_dssp             SSCCCCEEEC-CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC
T ss_pred             CCcCCCCCcc-ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc
Confidence             333333221 357788999999988643     4567899999999988777777776 68999999999998776644


Q ss_pred             ccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC-CCCChhhhhc
Q 025516          174 EISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL-QRLPDRLASY  248 (251)
Q Consensus       174 ~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~-~~~p~~l~~l  248 (251)
                      ...+++|+.|++++|.++.+|+.+..+++|+.|++++|.+. .+|..++.+++|+.|++++|++. +.+|.+++.+
T Consensus       187 ~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          187 QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred             cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCc-ccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence            44588999999999999999888889999999999999976 47888899999999999998887 5566655543

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=7.4e-22  Score=159.63  Aligned_cols=202  Identities=16%  Similarity=0.083  Sum_probs=159.5

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL  115 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L  115 (251)
                      ..++.+.+..+.+..+  .+..|.++++|++|++++|.+....+..+..+.+++.++++.|.+.+.....+   ..+++|
T Consensus        28 ~~l~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF---SGLSSL  102 (276)
T ss_dssp             TTCCEEECTTCCCCEE--CTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT---TTCTTC
T ss_pred             CCccEEECCCCccccc--CHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhh---cCCccc
Confidence            3567777766665544  36688999999999999999988777778777777777666666554222222   268999


Q ss_pred             eEeecCCCcccc-----ccCcCCccEEEcCCCcCCcc-ccCccccCCCccEEecCCCCCCCCCCccc--cCCcc----EE
Q 025516          116 MFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKS-LPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIG----QL  183 (251)
Q Consensus       116 ~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~----~L  183 (251)
                      ++|++++|.+..     +..+++|++|++++|.+.+. +|..++++++|++|++++|.+.+..+...  +..|+    +|
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence            999999999864     45678999999999986653 68889999999999999998776544433  44555    89


Q ss_pred             EccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          184 FLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       184 ~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      ++++|.++.++.......+|+.|++++|.+.+..+..+..+++|++|++++|++....|
T Consensus       183 ~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          183 DLSLNPMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             ECCSSCCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             ecCCCcccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            99999999888776666799999999999876666667999999999999999988776

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.87  E-value=1.7e-21  Score=158.24  Aligned_cols=185  Identities=17%  Similarity=0.114  Sum_probs=153.3

Q ss_pred             CCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCc-ccc-----ccCcCC
Q 025516           61 MRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSD-IEQ-----LWNSVK  133 (251)
Q Consensus        61 l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~-i~~-----l~~~~~  133 (251)
                      .++|+.|++++|.+....+..+..+.+++.++++.+.+.+..    +..+ .+++|++|++++|. +..     +..+++
T Consensus        31 ~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~  106 (285)
T 1ozn_A           31 PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID----AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR  106 (285)
T ss_dssp             CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC----TTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred             CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC----HhhcCCccCCCEEeCCCCCCccccCHHHhcCCcC
Confidence            579999999999999877777888888777777766665422    3333 68999999999997 654     456789


Q ss_pred             ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccC
Q 025516          134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSD  210 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~  210 (251)
                      |++|++++|.+.+..|..++++++|++|++++|.+....+..+  +++|++|++++|.++.+|. .+..+++|+.|++++
T Consensus       107 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence            9999999999777778888999999999999998776555433  8899999999999998876 488999999999999


Q ss_pred             CcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          211 CKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       211 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      |.+.+..|..++.+++|+.|++++|.+.+..|..++.++
T Consensus       187 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  225 (285)
T 1ozn_A          187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (285)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             CcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCc
Confidence            999888899999999999999999887764445566543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=1e-21  Score=169.44  Aligned_cols=113  Identities=22%  Similarity=0.081  Sum_probs=68.0

Q ss_pred             CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccC-CcccccCccCCEE
Q 025516          130 NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEEL-PSSFELLLRLWLL  206 (251)
Q Consensus       130 ~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L  206 (251)
                      .+++|++|++++|.+.+..|..++++++|++|++++|.+.+..+..+  +++|++|++++|.++.+ |..+..+++|+.|
T Consensus       297 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  376 (455)
T 3v47_A          297 HFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL  376 (455)
T ss_dssp             TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             cCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence            34556666666665554445555566666666666665544433332  56666666666666644 4456666666666


Q ss_pred             eccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          207 DLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       207 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      ++++|++.+..+..++.+++|++|++++|++.+..|
T Consensus       377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             ECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            666666555444455666667777777666666665

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.87  E-value=1.5e-21  Score=161.88  Aligned_cols=195  Identities=20%  Similarity=0.203  Sum_probs=115.3

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL  115 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L  115 (251)
                      ..++.+.+..+.+..  +.+..|.++++|++|++++|.+.+..+..+..+.+|+.++++.|.+     ..+|.... ++|
T Consensus        54 ~~l~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~l~~~~~-~~L  125 (332)
T 2ft3_A           54 PDTTLLDLQNNDISE--LRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHL-----VEIPPNLP-SSL  125 (332)
T ss_dssp             TTCCEEECCSSCCCE--ECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCC-----CSCCSSCC-TTC
T ss_pred             CCCeEEECCCCcCCc--cCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcC-----CccCcccc-ccC
Confidence            345555555555443  3366788889999999998888877677777776666555554443     34554433 677


Q ss_pred             eEeecCCCcccc-----ccCcCCccEEEcCCCcCCc--cccCccccC--------------------CCccEEecCCCCC
Q 025516          116 MFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLK--SLPAGIFNL--------------------EFLTELDLSGCSK  168 (251)
Q Consensus       116 ~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~--~~~~~~~~l--------------------~~L~~L~l~~n~~  168 (251)
                      ++|++++|++..     +..+++|++|++++|.+..  ..|..++.+                    ++|++|++++|.+
T Consensus       126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i  205 (332)
T 2ft3_A          126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKI  205 (332)
T ss_dssp             CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCC
T ss_pred             CEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcC
Confidence            777777777653     3345677777777776532  334444444                    3444444444444


Q ss_pred             CCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516          169 LKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       169 ~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      .+..+...  +++|+.|++++|.++.++. .+..+++|+.|++++|++. .+|..++.+++|++|++++|++.+
T Consensus       206 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~  278 (332)
T 2ft3_A          206 QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITK  278 (332)
T ss_dssp             CCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCB
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCc
Confidence            33332222  4556666666666665443 4556666666666666543 555556666666666666655443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.87  E-value=2.1e-21  Score=167.42  Aligned_cols=72  Identities=21%  Similarity=0.107  Sum_probs=38.5

Q ss_pred             cCCccEEEccccCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          177 SGNIGQLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       177 ~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      +++|++|++++|.++.+ |..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..++.+
T Consensus       298 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l  370 (455)
T 3v47_A          298 FTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGL  370 (455)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred             CCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccc
Confidence            34455555555555533 2344555555555555555544445555566666666666655555445544443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.87  E-value=2e-21  Score=159.36  Aligned_cols=188  Identities=16%  Similarity=0.115  Sum_probs=129.1

Q ss_pred             hhhcCCCccEEEeecccCCCCCc-cccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCcccc------c
Q 025516           57 TFAKMRKLRFLKFYSSSFNGENR-CKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQ------L  128 (251)
Q Consensus        57 ~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~------l  128 (251)
                      .+.++++|+.|++++|.+.+... ..+..+..++.++++.|.+.+    ..+..+ .+++|++|++++|.+.+      +
T Consensus        96 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~  171 (306)
T 2z66_A           96 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRV----AFNGIFNGLSSLEVLKMAGNSFQENFLPDIF  171 (306)
T ss_dssp             EEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEE----CSTTTTTTCTTCCEEECTTCEEGGGEECSCC
T ss_pred             hcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCc----cchhhcccCcCCCEEECCCCccccccchhHH
Confidence            35556666666666665554333 344455555544444444433    222333 58999999999998864      4


Q ss_pred             cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCcc-CCcccccCc-cCC
Q 025516          129 WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEE-LPSSFELLL-RLW  204 (251)
Q Consensus       129 ~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~-lp~~~~~l~-~L~  204 (251)
                      ..+++|++|++++|.+.+..|..++++++|++|++++|.+.+..+...  +++|++|++++|.++. .|..+..++ +|+
T Consensus       172 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~  251 (306)
T 2z66_A          172 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLA  251 (306)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCC
T ss_pred             hhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCC
Confidence            567899999999998777778889999999999999998776544333  7899999999999985 455777774 999


Q ss_pred             EEeccCCcCCccCc--ccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          205 LLDLSDCKRLKSLP--SSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       205 ~L~l~~n~~~~~~p--~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      .|++++|++....+  ....-+...+.+.+..+......|+.+...
T Consensus       252 ~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~~~g~  297 (306)
T 2z66_A          252 FLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGM  297 (306)
T ss_dssp             EEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGGGTTC
T ss_pred             EEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchhhCCc
Confidence            99999999875432  111222334445556666777777776543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.86  E-value=1.9e-21  Score=168.81  Aligned_cols=204  Identities=18%  Similarity=0.139  Sum_probs=108.7

Q ss_pred             CCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeecc-------------
Q 025516           34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG-------------  100 (251)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~-------------  100 (251)
                      ...+++.+.+..+.+..+  .+..|.++++|++|++++|.+....+..+..+.+|+.++++.|.+..             
T Consensus        54 ~l~~L~~L~L~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~  131 (477)
T 2id5_A           54 SFPHLEELELNENIVSAV--EPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLK  131 (477)
T ss_dssp             TCTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             CCCCCCEEECCCCccCEe--ChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCC
Confidence            344556655555544332  35566677777777777776665555555555555544444443322             


Q ss_pred             ------CCCCCCCC-CC-CcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCC
Q 025516          101 ------YPLKSLPS-NH-SAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCS  167 (251)
Q Consensus       101 ------~~~~~~~~-~~-~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~  167 (251)
                            +.+..++. .+ ++++|+.|++++|.+..     +..+++|+.|++++|.+.+..+..+..+++|++|++++|.
T Consensus       132 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~  211 (477)
T 2id5_A          132 SLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWP  211 (477)
T ss_dssp             EEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCT
T ss_pred             EEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCc
Confidence                  22222211 11 34555555555555442     2234455555555555444334445555556666665554


Q ss_pred             CCCCCCccc--------------------------cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCccc
Q 025516          168 KLKRLPEIS--------------------------SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSS  220 (251)
Q Consensus       168 ~~~~~~~~~--------------------------~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~  220 (251)
                      ..+.++...                          +++|+.|++++|.++.++. .+..+++|+.|++++|++.+..|..
T Consensus       212 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~  291 (477)
T 2id5_A          212 YLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA  291 (477)
T ss_dssp             TCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTT
T ss_pred             cccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHH
Confidence            443333211                          4455666666666554443 3456666666666666666655666


Q ss_pred             ccCCCCCCEEeccCCcCCC
Q 025516          221 LCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       221 ~~~l~~L~~L~l~~n~~~~  239 (251)
                      +..+++|++|++++|.+.+
T Consensus       292 ~~~l~~L~~L~L~~N~l~~  310 (477)
T 2id5_A          292 FRGLNYLRVLNVSGNQLTT  310 (477)
T ss_dssp             BTTCTTCCEEECCSSCCSC
T ss_pred             hcCcccCCEEECCCCcCce
Confidence            7777777777777765554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.86  E-value=1.9e-21  Score=160.08  Aligned_cols=199  Identities=21%  Similarity=0.198  Sum_probs=139.2

Q ss_pred             CCCceEEEEeecCCcccccCCchhh--hcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCC-CCC
Q 025516           34 GTEKIEGICLDLSKVKEIPLNPNTF--AKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLP-SNH  110 (251)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~-~~~  110 (251)
                      ...+++.+.+..+.+...  .|..+  ..+++|++|++++|.+.+. +..+..+.......|++++++++.+..++ ..+
T Consensus        93 ~l~~L~~L~L~~n~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~  169 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGT--APPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV  169 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSC--CCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred             CcCCccEEEccCCcccch--hHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence            456777777777665432  24443  7888888888888888876 55554441111123344444444444454 333


Q ss_pred             -CcCCceEeecCCCccc-------cc--cCcCCccEEEcCCCcCCc--cccCc-cccCCCccEEecCCCCCCCCCCc--c
Q 025516          111 -SAEKLMFLEVPNSDIE-------QL--WNSVKLVILNLSGSKSLK--SLPAG-IFNLEFLTELDLSGCSKLKRLPE--I  175 (251)
Q Consensus       111 -~l~~L~~L~l~~n~i~-------~l--~~~~~L~~L~l~~n~~~~--~~~~~-~~~l~~L~~L~l~~n~~~~~~~~--~  175 (251)
                       .+++|++|++++|++.       .+  ..+++|++|++++|.+.+  .++.. +.++++|++|++++|.+.+..|.  .
T Consensus       170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~  249 (312)
T 1wwl_A          170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSC  249 (312)
T ss_dssp             CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCC
T ss_pred             ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhh
Confidence             6889999999999853       22  677889999999987553  23322 34678999999999987776542  2


Q ss_pred             c-cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516          176 S-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       176 ~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      . +++|++|++++|.++.+|..+.  ++|+.|++++|++.+. |. +..+++|++|++++|++.+
T Consensus       250 ~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          250 DWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             CCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhcCCCCEEECCCCccChhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            2 6889999999999998888776  8899999999987655 66 8889999999999987765

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=8.3e-22  Score=176.94  Aligned_cols=187  Identities=17%  Similarity=0.155  Sum_probs=149.2

Q ss_pred             CchhhhcCCCccEEEeecccCCCC-----------------Cccccc--cCCcceecceeEEeeccCCCCCCCCCC-CcC
Q 025516           54 NPNTFAKMRKLRFLKFYSSSFNGE-----------------NRCKVS--HLQDLRFAEVKYLHWHGYPLKSLPSNH-SAE  113 (251)
Q Consensus        54 ~~~~~~~l~~L~~L~l~~n~~~~~-----------------~~~~l~--~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~  113 (251)
                      .|..|+++++|++|++++|.+++.                 .|..+.  .+.+|+.++++.|.+.+    .+|..+ .++
T Consensus       198 ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~----~~p~~l~~l~  273 (636)
T 4eco_A          198 VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT----KLPTFLKALP  273 (636)
T ss_dssp             ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS----SCCTTTTTCS
T ss_pred             CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc----cChHHHhcCC
Confidence            367899999999999999999985                 677777  88888888888877665    667665 689


Q ss_pred             CceEeecCCCc-ccc------ccCc------CCccEEEcCCCcCCccccC--ccccCCCccEEecCCCCCCCCCCccc-c
Q 025516          114 KLMFLEVPNSD-IEQ------LWNS------VKLVILNLSGSKSLKSLPA--GIFNLEFLTELDLSGCSKLKRLPEIS-S  177 (251)
Q Consensus       114 ~L~~L~l~~n~-i~~------l~~~------~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~-~  177 (251)
                      +|++|++++|+ +++      +..+      ++|++|++++|.+. .+|.  .++++++|++|++++|.+.+.+|... +
T Consensus       274 ~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l  352 (636)
T 4eco_A          274 EMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSE  352 (636)
T ss_dssp             SCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEE
T ss_pred             CCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCC
Confidence            99999999998 653      3333      88999999999866 8888  89999999999999998877777332 6


Q ss_pred             CCccEEEccccCCccCCcccccCcc-CCEEeccCCcCCccCcccccCCC--CCCEEeccCCcCCCCCChhhh
Q 025516          178 GNIGQLFLSGTAIEELPSSFELLLR-LWLLDLSDCKRLKSLPSSLCKLK--SLELLSLRGCSNLQRLPDRLA  246 (251)
Q Consensus       178 ~~L~~L~l~~n~i~~lp~~~~~l~~-L~~L~l~~n~~~~~~p~~~~~l~--~L~~L~l~~n~~~~~~p~~l~  246 (251)
                      ++|++|++++|.++.+|..++.+++ |+.|++++|.+. .+|..++.++  +|++|++++|.+.+.+|..++
T Consensus       353 ~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~  423 (636)
T 4eco_A          353 IKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFD  423 (636)
T ss_dssp             EEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSC
T ss_pred             CCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhc
Confidence            7888888888888888887888888 888888888866 6777666544  777777777777777776655

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.86  E-value=6.1e-21  Score=171.30  Aligned_cols=207  Identities=21%  Similarity=0.293  Sum_probs=132.2

Q ss_pred             CceEEEEeecCCcccccCCch--hhhcCCCccEEEeecccCCCCCccccccCCcceecc-------------------ee
Q 025516           36 EKIEGICLDLSKVKEIPLNPN--TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAE-------------------VK   94 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~-------------------L~   94 (251)
                      .+++.+.+..+.+..  + |.  .|+++++|+.|++++|.+.+..+ .+..+..++.++                   |+
T Consensus       305 ~~L~~L~L~~n~l~~--i-p~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~  380 (636)
T 4eco_A          305 EKIQIIYIGYNNLKT--F-PVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVE  380 (636)
T ss_dssp             GTCCEEECCSSCCSS--C-CCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCC
T ss_pred             CCCCEEECCCCcCCc--c-CchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCc
Confidence            566777776666552  2 44  77888888888888888775555 554444443333                   44


Q ss_pred             EEeeccCCCCCCCCCCC---cCCceEeecCCCcccc-----cc-------CcCCccEEEcCCCcCCccccCccc-cCCCc
Q 025516           95 YLHWHGYPLKSLPSNHS---AEKLMFLEVPNSDIEQ-----LW-------NSVKLVILNLSGSKSLKSLPAGIF-NLEFL  158 (251)
Q Consensus        95 ~~~l~~~~~~~~~~~~~---l~~L~~L~l~~n~i~~-----l~-------~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L  158 (251)
                      .++++++.+..+|..+.   +.+|++|++++|.+.+     ++       .+.+|++|++++|.+. .+|..+. .+++|
T Consensus       381 ~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L  459 (636)
T 4eco_A          381 NLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQIS-KFPKELFSTGSPL  459 (636)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCC-SCCTHHHHTTCCC
T ss_pred             EEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccC-cCCHHHHccCCCC
Confidence            44555555555665442   2367777777776643     33       4446777777776644 4554433 46777


Q ss_pred             cEEecCCCCCCCCCCccccC----------CccEEEccccCCccCCcccc--cCccCCEEeccCCcCCccCcccccCCCC
Q 025516          159 TELDLSGCSKLKRLPEISSG----------NIGQLFLSGTAIEELPSSFE--LLLRLWLLDLSDCKRLKSLPSSLCKLKS  226 (251)
Q Consensus       159 ~~L~l~~n~~~~~~~~~~~~----------~L~~L~l~~n~i~~lp~~~~--~l~~L~~L~l~~n~~~~~~p~~~~~l~~  226 (251)
                      ++|++++|.+. .+|...+.          +|++|++++|.++.+|..+.  .+++|+.|++++|++.+ +|..++.+++
T Consensus       460 ~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~  537 (636)
T 4eco_A          460 SSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSST  537 (636)
T ss_dssp             SEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSS
T ss_pred             CEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCC
Confidence            77777777655 44443311          77777777777777777665  77777777777777665 6777777777


Q ss_pred             CCEEec------cCCcCCCCCChhhhhcc
Q 025516          227 LELLSL------RGCSNLQRLPDRLASYR  249 (251)
Q Consensus       227 L~~L~l------~~n~~~~~~p~~l~~l~  249 (251)
                      |++|++      ++|.+.+.+|.+++.++
T Consensus       538 L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~  566 (636)
T 4eco_A          538 LKGFGIRNQRDAQGNRTLREWPEGITLCP  566 (636)
T ss_dssp             CCEEECCSCBCTTCCBCCCCCCTTGGGCS
T ss_pred             CCEEECCCCcccccCcccccChHHHhcCC
Confidence            777777      45666777777766654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.86  E-value=2.2e-21  Score=156.70  Aligned_cols=196  Identities=20%  Similarity=0.200  Sum_probs=109.6

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcC
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAE  113 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~  113 (251)
                      .+++.+.+..+.+...    ..+..+++|++|++++|.+.+.  ..+..+.+|+.++++     ++.+..++.. + .++
T Consensus        41 ~~L~~L~l~~~~i~~~----~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~-----~n~l~~~~~~~~~~l~  109 (272)
T 3rfs_A           41 NSIDQIIANNSDIKSV----QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILT-----GNQLQSLPNGVFDKLT  109 (272)
T ss_dssp             TTCCEEECTTSCCCCC----TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECT-----TSCCCCCCTTTTTTCT
T ss_pred             cceeeeeeCCCCcccc----cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECC-----CCccCccChhHhcCCc
Confidence            3444555544443322    2456677777777777766542  234444443333333     3333334432 1 466


Q ss_pred             CceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEcc
Q 025516          114 KLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLS  186 (251)
Q Consensus       114 ~L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~  186 (251)
                      +|++|++++|++..+     ..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+...  +++|++|+++
T Consensus       110 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~  189 (272)
T 3rfs_A          110 NLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLY  189 (272)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECC
Confidence            666666666666532     345566666666666544444445566666666666666554444322  5666666666


Q ss_pred             ccCCccCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          187 GTAIEELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       187 ~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      +|.++.+|.. +..+++|+.|++++|++..       .+++|+.++++.|.+.+.+|.+++.+.
T Consensus       190 ~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          190 QNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             SSCCSCCCTTTTTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CCcCCccCHHHHhCCcCCCEEEccCCCccc-------cCcHHHHHHHHHHhCCCcccCcccccC
Confidence            6666655543 4566666666666665442       344566666666666667776666543

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.86  E-value=3.9e-20  Score=149.15  Aligned_cols=176  Identities=19%  Similarity=0.171  Sum_probs=144.4

Q ss_pred             CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC--CcCCceEeecCCCccccc-----cCcCCc
Q 025516           62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH--SAEKLMFLEVPNSDIEQL-----WNSVKL  134 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~--~l~~L~~L~l~~n~i~~l-----~~~~~L  134 (251)
                      .+++.|++++|.+....+..+..+.+|+.++++.+.     +..++...  .+++|++|++++|.+..+     ..+++|
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-----l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L  111 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNK-----LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNL  111 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSC-----CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSC
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCc-----cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCC
Confidence            689999999999988777777777776666665554     44565543  589999999999999754     457799


Q ss_pred             cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccCC
Q 025516          135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDC  211 (251)
Q Consensus       135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n  211 (251)
                      ++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+  +++|++|++++|.++.+|. .+..+++|+.|++++|
T Consensus       112 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N  191 (270)
T 2o6q_A          112 AELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN  191 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCC
Confidence            999999998777777778899999999999998766554433  7899999999999998876 4788999999999999


Q ss_pred             cCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          212 KRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       212 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      ++.+..+..+..+++|+.|++++|+.....+
T Consensus       192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  222 (270)
T 2o6q_A          192 QLKRVPEGAFDSLEKLKMLQLQENPWDCTCN  222 (270)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred             cCCcCCHHHhccccCCCEEEecCCCeeCCCc
Confidence            9876666678999999999999998765543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.86  E-value=1.5e-20  Score=159.19  Aligned_cols=204  Identities=15%  Similarity=0.156  Sum_probs=103.7

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-CcC
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAE  113 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~  113 (251)
                      .+++.+.+..+.++.+  ++..|..+++|++|++++|.+....+..+..+.+++.++++.|.+.+     ++. .+ .++
T Consensus        45 ~~l~~l~l~~~~l~~l--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~  117 (390)
T 3o6n_A           45 NNQKIVTFKNSTMRKL--PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-----LPPHVFQNVP  117 (390)
T ss_dssp             CCCSEEEEESCEESEE--CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCT
T ss_pred             CCceEEEecCCchhhC--ChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCc-----CCHHHhcCCC
Confidence            3444454544443332  24456666666666666666665555555555555444444443332     222 11 355


Q ss_pred             CceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCC-----------------
Q 025516          114 KLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKR-----------------  171 (251)
Q Consensus       114 ~L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-----------------  171 (251)
                      +|++|++++|++..+     ..+++|++|++++|.+.+..|..++++++|++|++++|.+...                 
T Consensus       118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSC
T ss_pred             CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeeccccc
Confidence            555555555555432     2344555555555554444444455555555555555543211                 


Q ss_pred             -------------------------------------------CCcc-ccCCccEEEccccCCccC-CcccccCccCCEE
Q 025516          172 -------------------------------------------LPEI-SSGNIGQLFLSGTAIEEL-PSSFELLLRLWLL  206 (251)
Q Consensus       172 -------------------------------------------~~~~-~~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L  206 (251)
                                                                 .+.. .+++|++|++++|.++.+ |..+..+++|+.|
T Consensus       198 l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L  277 (390)
T 3o6n_A          198 LSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERL  277 (390)
T ss_dssp             CSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEE
T ss_pred             ccccCCCCcceEEECCCCeeeeccccccccccEEECCCCCCcccHHHcCCCCccEEECCCCcCCCcChhHccccccCCEE
Confidence                                                       0101 134555666666655533 4455566666666


Q ss_pred             eccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          207 DLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       207 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      ++++|++.+ +|..+..+++|++|++++|.+. .+|..++.+
T Consensus       278 ~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l  317 (390)
T 3o6n_A          278 YISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQF  317 (390)
T ss_dssp             ECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             ECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCcccccc
Confidence            666665433 3444556666666666665443 556555443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=1.7e-20  Score=167.30  Aligned_cols=116  Identities=27%  Similarity=0.189  Sum_probs=59.4

Q ss_pred             cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCC-CC--ccc--cCCccEEEccccCCccC-CcccccCccCC
Q 025516          131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKR-LP--EIS--SGNIGQLFLSGTAIEEL-PSSFELLLRLW  204 (251)
Q Consensus       131 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~--~~~--~~~L~~L~l~~n~i~~l-p~~~~~l~~L~  204 (251)
                      +++|++|++++|.+.+..|..++++++|++|++++|.+.+. ++  ...  +++|++|++++|.++.+ |..++.+++|+
T Consensus       424 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  503 (606)
T 3t6q_A          424 LHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMN  503 (606)
T ss_dssp             CTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred             cccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCC
Confidence            34455555555544444444444555555555555544331 11  111  45555555555555543 34455556666


Q ss_pred             EEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhh
Q 025516          205 LLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS  247 (251)
Q Consensus       205 ~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~  247 (251)
                      .|++++|++.+..|..+.++++| +|++++|.+.+..|..++.
T Consensus       504 ~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~  545 (606)
T 3t6q_A          504 HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPI  545 (606)
T ss_dssp             EEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHH
T ss_pred             EEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhccc
Confidence            66666665555555555666666 6666665555544444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.85  E-value=1.3e-20  Score=162.73  Aligned_cols=184  Identities=18%  Similarity=0.130  Sum_probs=154.5

Q ss_pred             CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccc-----cCcCCccE
Q 025516           62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQL-----WNSVKLVI  136 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l-----~~~~~L~~  136 (251)
                      ++++.|++++|.+.+..+..|..+.+|+.++|+.|.+.+.....+.   ++.+|++|++++|++..+     ..+++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~---~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFN---GLASLNTLELFDNWLTVIPSGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT---TCTTCCEEECCSSCCSBCCTTTSSSCTTCCE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhcc---CcccCCEEECCCCcCCccChhhhcccCCCCE
Confidence            6899999999999988888888888888777777766653222222   689999999999999754     45789999


Q ss_pred             EEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc---cCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516          137 LNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS---SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR  213 (251)
Q Consensus       137 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~  213 (251)
                      |++++|.+....+..+.++++|++|++++|...+.++...   +++|++|++++|.++.+| .+..+++|+.|++++|.+
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCC
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcC
Confidence            9999998665555678899999999999987777776532   789999999999999987 478899999999999999


Q ss_pred             CccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          214 LKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       214 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      .+..|..+..+++|++|++++|.+.+..|..++.+.
T Consensus       231 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~  266 (452)
T 3zyi_A          231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLA  266 (452)
T ss_dssp             SEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred             cccCcccccCccCCCEEEeCCCcCceECHHHhcCCC
Confidence            988899999999999999999988877777766553

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=1.9e-20  Score=166.95  Aligned_cols=189  Identities=16%  Similarity=0.154  Sum_probs=105.5

Q ss_pred             CCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-CcCCceEeecCCCccccc--
Q 025516           53 LNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAEKLMFLEVPNSDIEQL--  128 (251)
Q Consensus        53 ~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~i~~l--  128 (251)
                      +++..|..+++|++|++++|.+.+..+..+..+..|+.++|++|.+.+     ++. .+ .+++|++|++++|.+..+  
T Consensus        66 lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~l~~  140 (597)
T 3oja_B           66 LPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRY-----LPPHVFQNVPLLTVLVLERNDLSSLPR  140 (597)
T ss_dssp             ECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCC-----CCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCC-----CCHHHHcCCCCCCEEEeeCCCCCCCCH
Confidence            335566677777777777777666555566666555555555444433     222 11 466666666666666533  


Q ss_pred             ---cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCC---------------------------------
Q 025516          129 ---WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRL---------------------------------  172 (251)
Q Consensus       129 ---~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~---------------------------------  172 (251)
                         ..+++|++|++++|.+.+..|..++++++|++|++++|.+.+..                                 
T Consensus       141 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~  220 (597)
T 3oja_B          141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASH  220 (597)
T ss_dssp             TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEECCTTCSEEECCS
T ss_pred             HHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCccccccCCchhheeeccC
Confidence               33456666666666655555555666666666666666443210                                 


Q ss_pred             ---------------------------Ccc-ccCCccEEEccccCCccC-CcccccCccCCEEeccCCcCCccCcccccC
Q 025516          173 ---------------------------PEI-SSGNIGQLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCK  223 (251)
Q Consensus       173 ---------------------------~~~-~~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~  223 (251)
                                                 +.. .+++|+.|++++|.++.+ |..++.+++|+.|++++|.+.+ +|..++.
T Consensus       221 n~l~~~~~~~~~~L~~L~L~~n~l~~~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~  299 (597)
T 3oja_B          221 NSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQP  299 (597)
T ss_dssp             SCCCEEECSCCSCCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSC
T ss_pred             CcccccccccCCCCCEEECCCCCCCCChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCccccc
Confidence                                       001 144555555555555533 4455566666666666665433 3444555


Q ss_pred             CCCCCEEeccCCcCCCCCChhhhhc
Q 025516          224 LKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       224 l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      +++|+.|++++|.+. .+|..++.+
T Consensus       300 l~~L~~L~Ls~N~l~-~i~~~~~~l  323 (597)
T 3oja_B          300 IPTLKVLDLSHNHLL-HVERNQPQF  323 (597)
T ss_dssp             CTTCCEEECCSSCCC-CCGGGHHHH
T ss_pred             CCCCcEEECCCCCCC-ccCcccccC
Confidence            666666666665544 566555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.85  E-value=5.7e-22  Score=165.85  Aligned_cols=198  Identities=20%  Similarity=0.247  Sum_probs=111.3

Q ss_pred             ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCC
Q 025516           37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEK  114 (251)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~  114 (251)
                      .++.+.+..+.+..+  .+..|.++++|+.|++++|.+.+..+..+..+.+++.+++++|.+.     .++.. + .+++
T Consensus        53 ~L~~L~l~~n~i~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~  125 (353)
T 2z80_A           53 AVKSLDLSNNRITYI--SNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLS-----NLSSSWFKPLSS  125 (353)
T ss_dssp             TCCEEECTTSCCCEE--CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCS-----SCCHHHHTTCTT
T ss_pred             cCcEEECCCCcCccc--CHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCC-----cCCHhHhCCCcc
Confidence            455565655554433  3556777788888888877777665666666655555544444332     33332 1 3555


Q ss_pred             ceEeecCCCcccccc------CcCCccEEEcCCCcCCcc-ccCccccCCCccEEecCCCCCCCCCCccc-----------
Q 025516          115 LMFLEVPNSDIEQLW------NSVKLVILNLSGSKSLKS-LPAGIFNLEFLTELDLSGCSKLKRLPEIS-----------  176 (251)
Q Consensus       115 L~~L~l~~n~i~~l~------~~~~L~~L~l~~n~~~~~-~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-----------  176 (251)
                      |++|++++|++..++      .+++|++|++++|...+. .+..++++++|++|++++|.+.+..|...           
T Consensus       126 L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  205 (353)
T 2z80_A          126 LTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLIL  205 (353)
T ss_dssp             CSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEE
T ss_pred             CCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecC
Confidence            666666655554332      244555555555532222 23344455555555555554433322211           


Q ss_pred             ---------------cCCccEEEccccCCccC--------------------------------CcccccCccCCEEecc
Q 025516          177 ---------------SGNIGQLFLSGTAIEEL--------------------------------PSSFELLLRLWLLDLS  209 (251)
Q Consensus       177 ---------------~~~L~~L~l~~n~i~~l--------------------------------p~~~~~l~~L~~L~l~  209 (251)
                                     +++|++|++++|.++.+                                |..+..+++|+.|+++
T Consensus       206 ~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls  285 (353)
T 2z80_A          206 HMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFS  285 (353)
T ss_dssp             ECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECC
T ss_pred             CCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECC
Confidence                           45666666666666532                                2234566777777777


Q ss_pred             CCcCCccCccc-ccCCCCCCEEeccCCcCCCCCC
Q 025516          210 DCKRLKSLPSS-LCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       210 ~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      +|++. .+|.. ++.+++|++|++++|++.+..|
T Consensus       286 ~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          286 RNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             SSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            77765 45544 4777777777777777776554

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.85  E-value=3.5e-20  Score=159.47  Aligned_cols=198  Identities=20%  Similarity=0.207  Sum_probs=160.1

Q ss_pred             cCCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-
Q 025516           33 KGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH-  110 (251)
Q Consensus        33 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~-  110 (251)
                      ....+++.+.+..+.+..+  .+..|.++++|+.|++++|.+....+..+..+.+|+.++++.|.+.     .++. .+ 
T Consensus        85 ~~l~~L~~L~Ls~n~i~~i--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-----~~~~~~~~  157 (440)
T 3zyj_A           85 KHLRHLEILQLSRNHIRTI--EIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-----SIPSYAFN  157 (440)
T ss_dssp             SSCSSCCEEECCSSCCCEE--CGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-----EECTTTTT
T ss_pred             hCCCCCCEEECCCCcCCcc--ChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-----ccCHHHhh
Confidence            3456677777777766544  4789999999999999999999877777888877777777666655     4443 22 


Q ss_pred             CcCCceEeecCCC-ccc-----cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccE
Q 025516          111 SAEKLMFLEVPNS-DIE-----QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQ  182 (251)
Q Consensus       111 ~l~~L~~L~l~~n-~i~-----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~  182 (251)
                      .+++|++|++++| .+.     .+..+++|++|++++|. ...+|. +..+++|++|++++|.+.+..+..+  +++|+.
T Consensus       158 ~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  235 (440)
T 3zyj_A          158 RIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCN-LREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQK  235 (440)
T ss_dssp             TCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSC-CSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred             hCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCc-Cccccc-cCCCcccCEEECCCCccCccChhhhccCccCCE
Confidence            6899999999984 443     35668899999999997 446664 7889999999999998877666554  889999


Q ss_pred             EEccccCCccCC-cccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516          183 LFLSGTAIEELP-SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       183 L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      |++++|+++.++ ..+.++++|+.|++++|++....+..+..+++|+.|++++|+...
T Consensus       236 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          236 LWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             EECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             EECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            999999999764 467899999999999999887777788999999999999997643

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=5.8e-20  Score=148.30  Aligned_cols=179  Identities=18%  Similarity=0.148  Sum_probs=145.6

Q ss_pred             hhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc-----ccCc
Q 025516           57 TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LWNS  131 (251)
Q Consensus        57 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~~~  131 (251)
                      ....+++|+.|++++|.+...  ..+..+.+++.+     +++++.+..++....+++|++|++++|.+..     +..+
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L-----~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l  108 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKSV--QGIQYLPNVRYL-----ALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKL  108 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEE-----ECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             ccccccceeeeeeCCCCcccc--cccccCCCCcEE-----ECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCC
Confidence            456789999999999987643  234555555544     4455555555544478999999999999975     4557


Q ss_pred             CCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEec
Q 025516          132 VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDL  208 (251)
Q Consensus       132 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l  208 (251)
                      ++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+  +++|++|++++|.++.+|.. ++.+++|+.|++
T Consensus       109 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  188 (272)
T 3rfs_A          109 TNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRL  188 (272)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEEC
Confidence            899999999999776666678899999999999998776555443  89999999999999988764 588999999999


Q ss_pred             cCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          209 SDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       209 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      ++|++.+..|..++.+++|++|++++|++.+..|
T Consensus       189 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  222 (272)
T 3rfs_A          189 YQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  222 (272)
T ss_dssp             CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CCCcCCccCHHHHhCCcCCCEEEccCCCccccCc
Confidence            9999888777788999999999999999988877

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.85  E-value=1.7e-20  Score=158.88  Aligned_cols=88  Identities=24%  Similarity=0.161  Sum_probs=68.9

Q ss_pred             ccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCC
Q 025516          151 GIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLE  228 (251)
Q Consensus       151 ~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~  228 (251)
                      .++.+++|++|++++|.+.+..|..+  +++|++|++++|.++.+|..+..+++|+.|++++|++. .+|..++.+++|+
T Consensus       243 ~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~  321 (390)
T 3o6n_A          243 WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLE  321 (390)
T ss_dssp             GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCS
T ss_pred             HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccCCCCCCCEEECCCCcce-ecCccccccCcCC
Confidence            35667788888888887776656544  78888888888888888777778888888888888754 5677777888888


Q ss_pred             EEeccCCcCCC
Q 025516          229 LLSLRGCSNLQ  239 (251)
Q Consensus       229 ~L~l~~n~~~~  239 (251)
                      +|++++|++.+
T Consensus       322 ~L~L~~N~i~~  332 (390)
T 3o6n_A          322 NLYLDHNSIVT  332 (390)
T ss_dssp             EEECCSSCCCC
T ss_pred             EEECCCCccce
Confidence            88888877654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.85  E-value=1.5e-20  Score=167.73  Aligned_cols=90  Identities=24%  Similarity=0.158  Sum_probs=65.5

Q ss_pred             CccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCC
Q 025516          150 AGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSL  227 (251)
Q Consensus       150 ~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L  227 (251)
                      ..++.+++|++|++++|.+.+..|..+  +++|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..++.+++|
T Consensus       248 ~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L  326 (597)
T 3oja_B          248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRL  326 (597)
T ss_dssp             GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTC
T ss_pred             hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCC-ccCcccccCCCC
Confidence            345667778888888887766655543  67788888888888777777777788888888887755 566667777788


Q ss_pred             CEEeccCCcCCCC
Q 025516          228 ELLSLRGCSNLQR  240 (251)
Q Consensus       228 ~~L~l~~n~~~~~  240 (251)
                      ++|++++|.+.+.
T Consensus       327 ~~L~L~~N~l~~~  339 (597)
T 3oja_B          327 ENLYLDHNSIVTL  339 (597)
T ss_dssp             SEEECCSSCCCCC
T ss_pred             CEEECCCCCCCCc
Confidence            8888887766543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.85  E-value=2.7e-20  Score=166.12  Aligned_cols=212  Identities=17%  Similarity=0.140  Sum_probs=166.5

Q ss_pred             CCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCcc-ccccCCcceecceeEEeeccCCCCCCCCCC-C
Q 025516           34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRC-KVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-S  111 (251)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~  111 (251)
                      ...+++.+.+..+.+...  .+..+..+++|+.|++++|.+.+..+. .+..+..++.++++.|.+.+..  ..+..+ .
T Consensus       299 ~l~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~~~~~~  374 (606)
T 3t6q_A          299 GLSTLKKLVLSANKFENL--CQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD--CCNLQLRN  374 (606)
T ss_dssp             SCTTCCEEECTTCCCSBG--GGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE--ESTTTTTT
T ss_pred             ccccCCEEECccCCcCcC--chhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc--Ccchhccc
Confidence            345677777776665543  367889999999999999988754443 4777777777777666655421  113333 6


Q ss_pred             cCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCc-cccCCCccEEecCCCCCCCCCCccc--cCCccEE
Q 025516          112 AEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAG-IFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQL  183 (251)
Q Consensus       112 l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L  183 (251)
                      +++|++|++++|.+..     +..+++|++|++++|.+.+..|.. ++++++|++|++++|.+.+..+...  +++|++|
T Consensus       375 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  454 (606)
T 3t6q_A          375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHL  454 (606)
T ss_dssp             CTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEE
Confidence            8899999999998853     456789999999999877665544 7889999999999998877766644  8899999


Q ss_pred             EccccCCcc--CC--cccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          184 FLSGTAIEE--LP--SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       184 ~l~~n~i~~--lp--~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      ++++|.++.  +|  ..+..+++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..|..++.++
T Consensus       455 ~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  524 (606)
T 3t6q_A          455 NLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLK  524 (606)
T ss_dssp             ECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCC
T ss_pred             ECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccc
Confidence            999999874  33  4688999999999999998888889999999999999999999988888887765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.84  E-value=2.7e-20  Score=151.68  Aligned_cols=194  Identities=16%  Similarity=0.160  Sum_probs=152.3

Q ss_pred             CCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCC
Q 025516           35 TEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEK  114 (251)
Q Consensus        35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~  114 (251)
                      ..++..+.+..+.+..+   |..+  .++++.|++++|.+.+..+..+..+..++.++++.|.+.     .++....+++
T Consensus         9 l~~l~~l~~~~~~l~~i---p~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~l~~   78 (290)
T 1p9a_G            9 VASHLEVNCDKRNLTAL---PPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-----KLQVDGTLPV   78 (290)
T ss_dssp             STTCCEEECTTSCCSSC---CSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-----EEECCSCCTT
T ss_pred             cCCccEEECCCCCCCcC---CCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-----cccCCCCCCc
Confidence            44556666655555443   2233  378999999999998777777777777666666555544     4544457899


Q ss_pred             ceEeecCCCcccccc----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEcccc
Q 025516          115 LMFLEVPNSDIEQLW----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGT  188 (251)
Q Consensus       115 L~~L~l~~n~i~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n  188 (251)
                      |++|++++|++..++    .+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+  +++|+.|++++|
T Consensus        79 L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  158 (290)
T 1p9a_G           79 LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (290)
T ss_dssp             CCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             CCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence            999999999997654    56789999999998776666778899999999999998776555443  789999999999


Q ss_pred             CCccCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516          189 AIEELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       189 ~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      +++.+|.. +..+++|+.|++++|++. .+|..+..+++|+++++++|+...
T Consensus       159 ~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             cCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            99999875 478999999999999965 778888889999999999988764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.84  E-value=1.1e-20  Score=164.05  Aligned_cols=204  Identities=19%  Similarity=0.199  Sum_probs=145.4

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcC
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAE  113 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~  113 (251)
                      ..++.+.+..+.+..+  .+..|.++++|+.|++++|.+.+..+..|..+.+|+.++|+.|.+     ..+|.. + +++
T Consensus        32 ~~l~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l-----~~~~~~~~~~l~  104 (477)
T 2id5_A           32 TETRLLDLGKNRIKTL--NQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRL-----KLIPLGVFTGLS  104 (477)
T ss_dssp             TTCSEEECCSSCCCEE--CTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC-----CSCCTTSSTTCT
T ss_pred             CCCcEEECCCCccceE--CHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcC-----CccCcccccCCC
Confidence            4566666766665544  477899999999999999999987788888887776666655554     455543 2 689


Q ss_pred             CceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEcc
Q 025516          114 KLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLS  186 (251)
Q Consensus       114 ~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~  186 (251)
                      +|++|++++|.+..     +..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+  +++|+.|+++
T Consensus       105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~  184 (477)
T 2id5_A          105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR  184 (477)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred             CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence            99999999999864     4567899999999998777777788899999999999997655433322  6788888888


Q ss_pred             ccCCccCCc-ccccCccCCEEeccCCcCCccCc------------------------ccccCCCCCCEEeccCCcCCCCC
Q 025516          187 GTAIEELPS-SFELLLRLWLLDLSDCKRLKSLP------------------------SSLCKLKSLELLSLRGCSNLQRL  241 (251)
Q Consensus       187 ~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p------------------------~~~~~l~~L~~L~l~~n~~~~~~  241 (251)
                      +|.+..++. .+..+++|+.|++++|...+.+|                        ..+..+++|++|++++|.+.+..
T Consensus       185 ~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  264 (477)
T 2id5_A          185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIE  264 (477)
T ss_dssp             SCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred             CCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccC
Confidence            888876554 45666666666666655444433                        34556666666666666554433


Q ss_pred             Chhhh
Q 025516          242 PDRLA  246 (251)
Q Consensus       242 p~~l~  246 (251)
                      +..++
T Consensus       265 ~~~~~  269 (477)
T 2id5_A          265 GSMLH  269 (477)
T ss_dssp             TTSCT
T ss_pred             hhhcc
Confidence            33333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.84  E-value=5.8e-20  Score=152.37  Aligned_cols=206  Identities=15%  Similarity=0.143  Sum_probs=146.3

Q ss_pred             cCCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-
Q 025516           33 KGTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-  110 (251)
Q Consensus        33 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-  110 (251)
                      ....+++.+.+..+.+..  +.+..|+++++|++|++++|.+........   .+     |+.++++++.+..++.. + 
T Consensus        75 ~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~---~~-----L~~L~l~~n~i~~~~~~~~~  144 (332)
T 2ft3_A           75 KGLQHLYALVLVNNKISK--IHEKAFSPLRKLQKLYISKNHLVEIPPNLP---SS-----LVELRIHDNRIRKVPKGVFS  144 (332)
T ss_dssp             TTCTTCCEEECCSSCCCE--ECGGGSTTCTTCCEEECCSSCCCSCCSSCC---TT-----CCEEECCSSCCCCCCSGGGS
T ss_pred             hCCCCCcEEECCCCccCc--cCHhHhhCcCCCCEEECCCCcCCccCcccc---cc-----CCEEECCCCccCccCHhHhC
Confidence            345567777776666554  347788899999999999998774332221   22     33333333333344432 1 


Q ss_pred             CcCCceEeecCCCcc-------------------------ccccC--cCCccEEEcCCCcCCccccCccccCCCccEEec
Q 025516          111 SAEKLMFLEVPNSDI-------------------------EQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDL  163 (251)
Q Consensus       111 ~l~~L~~L~l~~n~i-------------------------~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  163 (251)
                      .+++|++|++++|.+                         ..++.  .++|++|++++|.+.+..+..++++++|++|++
T Consensus       145 ~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L  224 (332)
T 2ft3_A          145 GLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGL  224 (332)
T ss_dssp             SCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCSSCCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBC
T ss_pred             CCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCCccCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence            355555555555544                         33322  247888888888877666778899999999999


Q ss_pred             CCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccC------CCCCCEEeccCC
Q 025516          164 SGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCK------LKSLELLSLRGC  235 (251)
Q Consensus       164 ~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~------l~~L~~L~l~~n  235 (251)
                      ++|.+.+..+...  +++|++|++++|+++.+|..+..+++|+.|++++|++....+..+..      .++|+.|++++|
T Consensus       225 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N  304 (332)
T 2ft3_A          225 GHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN  304 (332)
T ss_dssp             CSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS
T ss_pred             CCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecC
Confidence            9998877666433  89999999999999999999999999999999999987666666654      467999999999


Q ss_pred             cCC--CCCChhhhhc
Q 025516          236 SNL--QRLPDRLASY  248 (251)
Q Consensus       236 ~~~--~~~p~~l~~l  248 (251)
                      +..  +..|..+..+
T Consensus       305 ~~~~~~~~~~~~~~l  319 (332)
T 2ft3_A          305 PVPYWEVQPATFRCV  319 (332)
T ss_dssp             SSCGGGSCGGGGTTB
T ss_pred             cccccccCccccccc
Confidence            876  4555555544

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.84  E-value=6.5e-20  Score=152.81  Aligned_cols=108  Identities=19%  Similarity=0.134  Sum_probs=73.7

Q ss_pred             cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEecc
Q 025516          131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLS  209 (251)
Q Consensus       131 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~  209 (251)
                      +++|++|++++|.+.+ .+. ++.+++|++|++++|.+... +... +++|++|++++|.++.++ .+..+++|+.|+++
T Consensus       220 ~~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          220 MTRLNSLKIGNNKITD-LSP-LANLSQLTWLEIGTNQISDI-NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLN  295 (347)
T ss_dssp             CTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC-GGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECC
T ss_pred             CCcCCEEEccCCccCC-Ccc-hhcCCCCCEEECCCCccCCC-hhHhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECc
Confidence            3455556665555332 222 55666666666666654442 3222 677888888888877764 46778888888888


Q ss_pred             CCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          210 DCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       210 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      +|++.+..|..++.+++|++|++++|++.+..|
T Consensus       296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  328 (347)
T 4fmz_A          296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP  328 (347)
T ss_dssp             SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG
T ss_pred             CCcCCCcChhHhhccccCCEEEccCCccccccC
Confidence            888877777888888888888888887665544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.84  E-value=3.2e-20  Score=153.79  Aligned_cols=183  Identities=16%  Similarity=0.073  Sum_probs=150.4

Q ss_pred             CCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccccccC--cCCccEE
Q 025516           61 MRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQLWN--SVKLVIL  137 (251)
Q Consensus        61 l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~l~~--~~~L~~L  137 (251)
                      .++++.|++++|.+.+..+..+..+.+++.++++.|.+.+.    .|..+ .+++|++|++++|++..++.  .++|++|
T Consensus        51 ~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L  126 (330)
T 1xku_A           51 PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI----SPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQEL  126 (330)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB----CTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEE
T ss_pred             CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee----CHHHhcCCCCCCEEECCCCcCCccChhhcccccEE
Confidence            37899999999999987777788888877777776666542    24444 68999999999999987654  3689999


Q ss_pred             EcCCCcCCccccCccccCCCccEEecCCCCCCC--CCCccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516          138 NLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLK--RLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR  213 (251)
Q Consensus       138 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~--~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~  213 (251)
                      ++++|.+.+..+..++++++|++|++++|.+..  ..+...  +++|++|++++|.++.+|..+.  ++|+.|++++|.+
T Consensus       127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--~~L~~L~l~~n~l  204 (330)
T 1xku_A          127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--PSLTELHLDGNKI  204 (330)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCC--TTCSEEECTTSCC
T ss_pred             ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCcccc--ccCCEEECCCCcC
Confidence            999998776666778899999999999998753  333333  8899999999999999997664  8999999999998


Q ss_pred             CccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          214 LKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       214 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      .+..|..+..+++|++|++++|.+.+..|..++.++
T Consensus       205 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  240 (330)
T 1xku_A          205 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP  240 (330)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence            888889999999999999999988776666666543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.84  E-value=2.7e-20  Score=166.06  Aligned_cols=202  Identities=18%  Similarity=0.115  Sum_probs=116.9

Q ss_pred             ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCce
Q 025516           37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLM  116 (251)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~  116 (251)
                      +++.+.+..+.+......+..+..+++|+.|++++|.+.+. +..+..+.+++.++++.|.+.+...  .+....+++|+
T Consensus       351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~~l~~L~  427 (606)
T 3vq2_A          351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTE--FSAFLSLEKLL  427 (606)
T ss_dssp             TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTT--TTTTTTCTTCC
T ss_pred             CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccC--hhhhhccccCC
Confidence            33444444443333322345566666666666666655442 2444555555555555555544211  01112466677


Q ss_pred             EeecCCCcccc-----ccCcCCccEEEcCCCcCCc-cccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEcccc
Q 025516          117 FLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLK-SLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGT  188 (251)
Q Consensus       117 ~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n  188 (251)
                      +|++++|.+..     +..+++|++|++++|.+.+ ..|..++.+++|++|++++|.+.+..|..+  +++|++|++++|
T Consensus       428 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N  507 (606)
T 3vq2_A          428 YLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHN  507 (606)
T ss_dssp             EEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred             EEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCC
Confidence            77777776643     4455667777777766555 256666667777777777776665555433  667777777777


Q ss_pred             CCccC-CcccccCccCCEEeccCCcCCccCcccccCCC-CCCEEeccCCcCCCCCC
Q 025516          189 AIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLK-SLELLSLRGCSNLQRLP  242 (251)
Q Consensus       189 ~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~-~L~~L~l~~n~~~~~~p  242 (251)
                      +++.+ |..++.+++|+.|++++|++. .+|..+..++ +|++|++++|++....+
T Consensus       508 ~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          508 NLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             CCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred             cCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence            77654 556666777777777777654 5555566665 47777777776665444

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.84  E-value=2.9e-21  Score=161.51  Aligned_cols=177  Identities=17%  Similarity=0.157  Sum_probs=104.3

Q ss_pred             CCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC--CC-C
Q 025516           35 TEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS--NH-S  111 (251)
Q Consensus        35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~--~~-~  111 (251)
                      ..+++.+.+..+.+...  .+..|.++++|++|++++|.++...+..+..+.+++.++++.|.     +..+|.  .+ .
T Consensus        75 l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-----l~~l~~~~~~~~  147 (353)
T 2z80_A           75 CVNLQALVLTSNGINTI--EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNP-----YKTLGETSLFSH  147 (353)
T ss_dssp             CTTCCEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCC-----CSSSCSSCSCTT
T ss_pred             CCCCCEEECCCCccCcc--CHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCC-----CcccCchhhhcc
Confidence            44555555555544432  25566667777777777776665444444444444444433333     333433  12 3


Q ss_pred             cCCceEeecCCCc-cc-----cccCcCCccEEEcCCCcCCccccCcccc------------------------CCCccEE
Q 025516          112 AEKLMFLEVPNSD-IE-----QLWNSVKLVILNLSGSKSLKSLPAGIFN------------------------LEFLTEL  161 (251)
Q Consensus       112 l~~L~~L~l~~n~-i~-----~l~~~~~L~~L~l~~n~~~~~~~~~~~~------------------------l~~L~~L  161 (251)
                      +++|++|++++|. +.     .+..+++|++|++++|.+.+..|..++.                        +++|++|
T Consensus       148 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  227 (353)
T 2z80_A          148 LTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECL  227 (353)
T ss_dssp             CTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEE
T ss_pred             CCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEE
Confidence            5555555555552 32     2333445555555555444443444443                        5566666


Q ss_pred             ecCCCCCCCCCC-------------------------------cc--ccCCccEEEccccCCccCCccc-ccCccCCEEe
Q 025516          162 DLSGCSKLKRLP-------------------------------EI--SSGNIGQLFLSGTAIEELPSSF-ELLLRLWLLD  207 (251)
Q Consensus       162 ~l~~n~~~~~~~-------------------------------~~--~~~~L~~L~l~~n~i~~lp~~~-~~l~~L~~L~  207 (251)
                      ++++|.+.+..+                               ..  .+++|++|++++|+++.+|..+ ..+++|+.|+
T Consensus       228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~  307 (353)
T 2z80_A          228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIW  307 (353)
T ss_dssp             EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEE
Confidence            666665544211                               11  1579999999999999999874 8999999999


Q ss_pred             ccCCcCCccCc
Q 025516          208 LSDCKRLKSLP  218 (251)
Q Consensus       208 l~~n~~~~~~p  218 (251)
                      +++|++....|
T Consensus       308 L~~N~~~~~~~  318 (353)
T 2z80_A          308 LHTNPWDCSCP  318 (353)
T ss_dssp             CCSSCBCCCHH
T ss_pred             eeCCCccCcCC
Confidence            99999887665

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=9.5e-20  Score=167.67  Aligned_cols=207  Identities=18%  Similarity=0.193  Sum_probs=100.5

Q ss_pred             CCCceEEEEeecCCcccccCCch--hhhcCCCccEEEeecccCCCCCccccccCCcceecc-------------------
Q 025516           34 GTEKIEGICLDLSKVKEIPLNPN--TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAE-------------------   92 (251)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~-------------------   92 (251)
                      ..++++.+.+..+.+..+   |.  .|+++++|+.|++++|.+. ..+ .+..+..|+.++                   
T Consensus       546 ~l~~L~~L~Ls~N~L~~i---p~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~  620 (876)
T 4ecn_A          546 TGPKIQIFYMGYNNLEEF---PASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQ  620 (876)
T ss_dssp             TTTTCCEEECCSSCCCBC---CCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTT
T ss_pred             ccCCccEEEeeCCcCCcc---CChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccccchHHHhhcccc
Confidence            344566666655555422   33  5666666666666666655 222 333333332222                   


Q ss_pred             eeEEeeccCCCCCCCCCCC-c--CCceEeecCCCcccc----cc------CcCCccEEEcCCCcCCccccCccc-cCCCc
Q 025516           93 VKYLHWHGYPLKSLPSNHS-A--EKLMFLEVPNSDIEQ----LW------NSVKLVILNLSGSKSLKSLPAGIF-NLEFL  158 (251)
Q Consensus        93 L~~~~l~~~~~~~~~~~~~-l--~~L~~L~l~~n~i~~----l~------~~~~L~~L~l~~n~~~~~~~~~~~-~l~~L  158 (251)
                      |+.++++++.+..+|..+. +  .+|+.|++++|++.+    ++      .+.+|+.|++++|.+. .+|..+. .+++|
T Consensus       621 L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L  699 (876)
T 4ecn_A          621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPI  699 (876)
T ss_dssp             CCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCC
T ss_pred             CCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCC
Confidence            3333333444444444331 1  225555555555432    11      1224555555555433 3443332 45556


Q ss_pred             cEEecCCCCCCCCCCcccc----------CCccEEEccccCCccCCcccc--cCccCCEEeccCCcCCccCcccccCCCC
Q 025516          159 TELDLSGCSKLKRLPEISS----------GNIGQLFLSGTAIEELPSSFE--LLLRLWLLDLSDCKRLKSLPSSLCKLKS  226 (251)
Q Consensus       159 ~~L~l~~n~~~~~~~~~~~----------~~L~~L~l~~n~i~~lp~~~~--~l~~L~~L~l~~n~~~~~~p~~~~~l~~  226 (251)
                      +.|++++|.+. .+|...+          ++|++|++++|+++.+|..+.  .+++|+.|++++|++.+ +|..++.+++
T Consensus       700 ~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~  777 (876)
T 4ecn_A          700 STIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQ  777 (876)
T ss_dssp             SEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTT
T ss_pred             CEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCC
Confidence            66666655444 3333221          155566666665555555554  55556666666555444 4555555555


Q ss_pred             CCEEeccC------CcCCCCCChhhhhc
Q 025516          227 LELLSLRG------CSNLQRLPDRLASY  248 (251)
Q Consensus       227 L~~L~l~~------n~~~~~~p~~l~~l  248 (251)
                      |+.|++++      |.+.+.+|..++.+
T Consensus       778 L~~L~Ls~N~~ls~N~l~~~ip~~l~~L  805 (876)
T 4ecn_A          778 LKAFGIRHQRDAEGNRILRQWPTGITTC  805 (876)
T ss_dssp             CCEEECCCCBCTTCCBCCCCCCTTGGGC
T ss_pred             CCEEECCCCCCcccccccccChHHHhcC
Confidence            55555543      44555555555443

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.83  E-value=4.8e-20  Score=166.60  Aligned_cols=206  Identities=20%  Similarity=0.168  Sum_probs=117.1

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcC
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAE  113 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~  113 (251)
                      .+++.+.+..+.+..  +.+..|.++++|++|++++|.+.+..+..+..+..|+.++++.|.+     ..+|.. + +++
T Consensus        25 ~~l~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l-----~~l~~~~~~~l~   97 (680)
T 1ziw_A           25 TNITVLNLTHNQLRR--LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNEL-----SQLSDKTFAFCT   97 (680)
T ss_dssp             TTCSEEECCSSCCCC--CCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCC-----CCCCTTTTTTCT
T ss_pred             CCCcEEECCCCCCCC--cCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCcc-----CccChhhhccCC
Confidence            345555555554433  3355677777777777777777666665666655555444444433     334432 2 466


Q ss_pred             CceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc----ccCCccEEE
Q 025516          114 KLMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI----SSGNIGQLF  184 (251)
Q Consensus       114 ~L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~----~~~~L~~L~  184 (251)
                      +|++|++++|++..+     ..+++|++|++++|.+.+..|..++++++|++|++++|.+.+..+..    .+++|++|+
T Consensus        98 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~  177 (680)
T 1ziw_A           98 NLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLE  177 (680)
T ss_dssp             TCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEE
T ss_pred             CCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEE
Confidence            666666666665432     34556666666666655555555555666666666665544332221    123444444


Q ss_pred             ccccCCccC----------------------------------------------------CcccccCcc--CCEEeccC
Q 025516          185 LSGTAIEEL----------------------------------------------------PSSFELLLR--LWLLDLSD  210 (251)
Q Consensus       185 l~~n~i~~l----------------------------------------------------p~~~~~l~~--L~~L~l~~  210 (251)
                      +++|.++.+                                                    |..+..++.  |+.|++++
T Consensus       178 L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~  257 (680)
T 1ziw_A          178 LSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY  257 (680)
T ss_dssp             CTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred             CCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence            444443322                                                    223334433  77777777


Q ss_pred             CcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          211 CKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       211 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      |.+.+..|..++.+++|++|++++|.+.+..|..++.+
T Consensus       258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l  295 (680)
T 1ziw_A          258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGL  295 (680)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTC
T ss_pred             CCcCccCcccccCcccccEeeCCCCccCccChhhhcCC
Confidence            77666666677777777777777777766666555443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.83  E-value=7.2e-20  Score=150.38  Aligned_cols=189  Identities=14%  Similarity=0.130  Sum_probs=148.3

Q ss_pred             CCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCC
Q 025516           35 TEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEK  114 (251)
Q Consensus        35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~  114 (251)
                      ..+++.+.+..+.+..+   + .+..+++|+.|++++|.+.+..+  +..+.+|+.++++.|.+     ..++....+++
T Consensus        40 l~~L~~L~l~~~~i~~l---~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l-----~~~~~~~~l~~  108 (308)
T 1h6u_A           40 LDGITTLSAFGTGVTTI---E-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL-----KNVSAIAGLQS  108 (308)
T ss_dssp             HHTCCEEECTTSCCCCC---T-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC-----SCCGGGTTCTT
T ss_pred             cCCcCEEEeeCCCccCc---h-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcC-----CCchhhcCCCC
Confidence            34566666766655543   2 58899999999999999887544  66666666666655554     44554457899


Q ss_pred             ceEeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCc
Q 025516          115 LMFLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIE  191 (251)
Q Consensus       115 L~~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~  191 (251)
                      |++|++++|++..   +..+++|++|++++|.+.+ ++. ++.+++|++|++++|.+....+-..+++|+.|++++|.++
T Consensus       109 L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~  186 (308)
T 1h6u_A          109 IKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITN-ISP-LAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS  186 (308)
T ss_dssp             CCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCC-CGG-GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             CCEEECCCCCCCCchhhcCCCCCCEEECCCCccCc-Ccc-ccCCCCccEEEccCCcCCCChhhcCCCCCCEEECCCCccC
Confidence            9999999999875   5567899999999998554 443 8889999999999998765444233899999999999999


Q ss_pred             cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516          192 ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       192 ~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      .++. +..+++|+.|++++|++.+..  .+..+++|+.|++++|++.+
T Consensus       187 ~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          187 DISP-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCGG-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             cChh-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            8876 789999999999999976554  38999999999999987653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.83  E-value=3e-20  Score=170.99  Aligned_cols=181  Identities=19%  Similarity=0.162  Sum_probs=134.8

Q ss_pred             chhhhcCCCccEEEeecccCCC-----------------CCccccc--cCCcceecceeEEeeccCCCCCCCCCC-CcCC
Q 025516           55 PNTFAKMRKLRFLKFYSSSFNG-----------------ENRCKVS--HLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEK  114 (251)
Q Consensus        55 ~~~~~~l~~L~~L~l~~n~~~~-----------------~~~~~l~--~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~  114 (251)
                      |..|+++++|+.|++++|.+++                 ..|..+.  .+.+|+.++|+.|.+.+    .+|..+ .+++
T Consensus       441 P~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~  516 (876)
T 4ecn_A          441 SKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPE  516 (876)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSS
T ss_pred             hHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCC
Confidence            6678899999999999998887                 2566655  77777777777666554    566555 5888


Q ss_pred             ceEeecCCCc-ccc------ccC-------cCCccEEEcCCCcCCccccC--ccccCCCccEEecCCCCCCCCCCccc-c
Q 025516          115 LMFLEVPNSD-IEQ------LWN-------SVKLVILNLSGSKSLKSLPA--GIFNLEFLTELDLSGCSKLKRLPEIS-S  177 (251)
Q Consensus       115 L~~L~l~~n~-i~~------l~~-------~~~L~~L~l~~n~~~~~~~~--~~~~l~~L~~L~l~~n~~~~~~~~~~-~  177 (251)
                      |++|++++|+ ++.      +..       +++|++|++++|.+. .+|.  .++++++|++|++++|.+. .+|... +
T Consensus       517 L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L  594 (876)
T 4ecn_A          517 LQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTN  594 (876)
T ss_dssp             CCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTT
T ss_pred             CCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cchhhcCC
Confidence            8999998887 543      222       348888888888755 7787  7888888888888888766 666333 7


Q ss_pred             CCccEEEccccCCccCCcccccCcc-CCEEeccCCcCCccCcccccCCCC--CCEEeccCCcCCCCCC
Q 025516          178 GNIGQLFLSGTAIEELPSSFELLLR-LWLLDLSDCKRLKSLPSSLCKLKS--LELLSLRGCSNLQRLP  242 (251)
Q Consensus       178 ~~L~~L~l~~n~i~~lp~~~~~l~~-L~~L~l~~n~~~~~~p~~~~~l~~--L~~L~l~~n~~~~~~p  242 (251)
                      ++|+.|++++|.++.+|..+..+++ |+.|++++|.+. .+|..+..++.  |+.|++++|.+.+.+|
T Consensus       595 ~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip  661 (876)
T 4ecn_A          595 VKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGR  661 (876)
T ss_dssp             SEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSS
T ss_pred             CcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccc
Confidence            7888888888888888888888888 888888888865 66766655543  7777777776665544

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.83  E-value=4.3e-20  Score=164.79  Aligned_cols=138  Identities=24%  Similarity=0.235  Sum_probs=99.5

Q ss_pred             CcCCceEeecCCCcccc------ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCC-CCccc--cCCcc
Q 025516          111 SAEKLMFLEVPNSDIEQ------LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKR-LPEIS--SGNIG  181 (251)
Q Consensus       111 ~l~~L~~L~l~~n~i~~------l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~~--~~~L~  181 (251)
                      .+++|+.|++++|++..      +..+++|++|++++|.+.+..|..++++++|++|++++|.+.+. .|..+  +++|+
T Consensus       397 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  476 (606)
T 3vq2_A          397 GLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLT  476 (606)
T ss_dssp             TCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence            46667777777776643      33456777777777776666677777777788888887776652 44433  67888


Q ss_pred             EEEccccCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          182 QLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       182 ~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      +|++++|.++.+ |..++++++|+.|++++|++.+..|..++.+++|++|++++|++. .+|.++..+.
T Consensus       477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~  544 (606)
T 3vq2_A          477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFP  544 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSC
T ss_pred             EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhc
Confidence            888888888754 456778888888888888877777888888888888888887654 6777666543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.83  E-value=1.5e-20  Score=163.78  Aligned_cols=186  Identities=15%  Similarity=0.056  Sum_probs=131.8

Q ss_pred             chhhhcCC----CccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccccC
Q 025516           55 PNTFAKMR----KLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWN  130 (251)
Q Consensus        55 ~~~~~~l~----~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~  130 (251)
                      |..+..+.    +|+.|++++|.+.+..+..+..+.+|+.++|+.|.+.+.     +....+++|++|++++|.+.+++.
T Consensus        23 ~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~-----~~l~~l~~L~~L~Ls~N~l~~l~~   97 (487)
T 3oja_A           23 KQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-----LDLESLSTLRTLDLNNNYVQELLV   97 (487)
T ss_dssp             HHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEE-----EECTTCTTCCEEECCSSEEEEEEE
T ss_pred             HHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCC-----cccccCCCCCEEEecCCcCCCCCC
Confidence            44454444    899999999999998888888888888888877776642     223357788888888887766554


Q ss_pred             cC---------------------CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc---cCCccEEEcc
Q 025516          131 SV---------------------KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS---SGNIGQLFLS  186 (251)
Q Consensus       131 ~~---------------------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~L~~L~l~  186 (251)
                      .+                     +|+.|++++|.+.+..|..++++++|++|++++|.+.+..|...   +++|+.|+++
T Consensus        98 ~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls  177 (487)
T 3oja_A           98 GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (487)
T ss_dssp             CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence            44                     45555555555555556666777778888888877766555432   5778888888


Q ss_pred             ccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          187 GTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       187 ~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      +|.++.+|. ...+++|+.|++++|.+.+ +|..++.+++|+.|++++|.+. .+|..++.+
T Consensus       178 ~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l  236 (487)
T 3oja_A          178 YNFIYDVKG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (487)
T ss_dssp             TSCCCEEEC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             CCccccccc-cccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEecCCcCc-ccchhhccC
Confidence            888776654 3357888888888888665 4445888888888888887666 477766544

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.82  E-value=2.2e-19  Score=146.23  Aligned_cols=181  Identities=21%  Similarity=0.194  Sum_probs=143.3

Q ss_pred             hhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-CcCCceEeecCCCccccc---cCcC
Q 025516           58 FAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAEKLMFLEVPNSDIEQL---WNSV  132 (251)
Q Consensus        58 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~i~~l---~~~~  132 (251)
                      +.++++++.++++++.++...+ .+  +..++     .++++++.+..++. .+ .+++|++|++++|.+..+   ..++
T Consensus         6 ~~~l~~l~~l~~~~~~l~~ip~-~~--~~~l~-----~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~   77 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLTALPP-DL--PKDTT-----ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLP   77 (290)
T ss_dssp             EECSTTCCEEECTTSCCSSCCS-CC--CTTCC-----EEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCT
T ss_pred             ccccCCccEEECCCCCCCcCCC-CC--CCCCC-----EEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCC
Confidence            5678999999999998875432 22  23444     44455555444432 23 689999999999999754   4577


Q ss_pred             CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEecc
Q 025516          133 KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLS  209 (251)
Q Consensus       133 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~  209 (251)
                      +|++|++++|. ...+|..+.++++|++|++++|.+.+..+..+  +++|++|++++|+++.+|.. +..+++|+.|+++
T Consensus        78 ~L~~L~Ls~N~-l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  156 (290)
T 1p9a_G           78 VLGTLDLSHNQ-LQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (290)
T ss_dssp             TCCEEECCSSC-CSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             cCCEEECCCCc-CCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECC
Confidence            99999999997 55788888899999999999998876655544  88999999999999988864 5789999999999


Q ss_pred             CCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          210 DCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       210 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      +|++.+..+..+..+++|++|++++|.+. .+|.++...
T Consensus       157 ~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~  194 (290)
T 1p9a_G          157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGS  194 (290)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTT
T ss_pred             CCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhccc
Confidence            99987655566789999999999997665 788876654

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.82  E-value=2.9e-19  Score=142.52  Aligned_cols=171  Identities=17%  Similarity=0.169  Sum_probs=123.2

Q ss_pred             CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCCceEeecCCCcccc-----ccCcCCc
Q 025516           62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEKLMFLEVPNSDIEQ-----LWNSVKL  134 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~L~~L~l~~n~i~~-----l~~~~~L  134 (251)
                      ...+.++++++.+..... .+  ...     ++.++++++.+..++.. + .+++|++|++++|.+..     +..+++|
T Consensus        14 ~~~~~l~~~~~~l~~~p~-~~--~~~-----l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L   85 (251)
T 3m19_A           14 EGKKEVDCQGKSLDSVPS-GI--PAD-----TEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTEL   85 (251)
T ss_dssp             GGGTEEECTTCCCSSCCS-CC--CTT-----CCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred             CCCeEEecCCCCccccCC-CC--CCC-----CCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcC
Confidence            345566666666553221 11  122     33344444444444332 2 57788888888887764     4556789


Q ss_pred             cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccCC
Q 025516          135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDC  211 (251)
Q Consensus       135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n  211 (251)
                      ++|++++|.+.+..+..++.+++|++|++++|.+.+..+..+  +++|++|++++|+++.+|. .++.+++|+.|++++|
T Consensus        86 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N  165 (251)
T 3m19_A           86 GTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN  165 (251)
T ss_dssp             CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCC
Confidence            999999988766666677888999999999998765555433  7889999999999998876 5788999999999999


Q ss_pred             cCCccCcccccCCCCCCEEeccCCcCCCC
Q 025516          212 KRLKSLPSSLCKLKSLELLSLRGCSNLQR  240 (251)
Q Consensus       212 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~  240 (251)
                      ++.+..+..+..+++|++|++++|++...
T Consensus       166 ~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          166 QLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            98777777888999999999999888765

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.82  E-value=7.3e-19  Score=141.66  Aligned_cols=179  Identities=21%  Similarity=0.166  Sum_probs=139.6

Q ss_pred             CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-CcCCceEeecCCCccccc-----cCcCCc
Q 025516           62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAEKLMFLEVPNSDIEQL-----WNSVKL  134 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~i~~l-----~~~~~L  134 (251)
                      .+.+.++++++.++... ..+  +..     ++.++++++.+..++. .+ .+++|++|++++|++..+     ..+++|
T Consensus        16 ~~~~~l~~~~~~l~~ip-~~~--~~~-----l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L   87 (270)
T 2o6q_A           16 NNKNSVDCSSKKLTAIP-SNI--PAD-----TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL   87 (270)
T ss_dssp             TTTTEEECTTSCCSSCC-SCC--CTT-----CSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTC
T ss_pred             CCCCEEEccCCCCCccC-CCC--CCC-----CCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCC
Confidence            35788999998887532 222  233     4455555555556664 33 689999999999999754     457799


Q ss_pred             cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEeccCC
Q 025516          135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDC  211 (251)
Q Consensus       135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n  211 (251)
                      ++|++++|.+.+..+..++++++|++|++++|.+....+..+  +++|++|++++|.++.+|.. +..+++|+.|++++|
T Consensus        88 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n  167 (270)
T 2o6q_A           88 ETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNN  167 (270)
T ss_dssp             CEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCC
Confidence            999999998666556667889999999999998877666543  89999999999999988875 789999999999999


Q ss_pred             cCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          212 KRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       212 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      .+....+..+..+++|++|++++|.+.+..+..++.+
T Consensus       168 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  204 (270)
T 2o6q_A          168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSL  204 (270)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred             cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccc
Confidence            9887777779999999999999987765333345443

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.82  E-value=5.9e-19  Score=154.73  Aligned_cols=174  Identities=15%  Similarity=0.079  Sum_probs=134.3

Q ss_pred             CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCcccc-------ccCcCC
Q 025516           62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQ-------LWNSVK  133 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~-------l~~~~~  133 (251)
                      .+|+.|++++|.+.....  ...+..++.++++.|.+.+    .+|..+ .+++|++|++++|++.+       +..+++
T Consensus       302 ~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~  375 (520)
T 2z7x_B          302 MNIKNFTVSGTRMVHMLC--PSKISPFLHLDFSNNLLTD----TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS  375 (520)
T ss_dssp             CCCSEEEEESSCCCCCCC--CSSCCCCCEEECCSSCCCT----TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTT
T ss_pred             CceeEEEcCCCccccccc--hhhCCcccEEEeECCccCh----hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCC
Confidence            445555555555433210  1344555555555555444    244444 68999999999999974       457889


Q ss_pred             ccEEEcCCCcCCccccCc-cccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCc
Q 025516          134 LVILNLSGSKSLKSLPAG-IFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCK  212 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~  212 (251)
                      |++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+....++|+.|++++|+++.+|..+..+++|+.|++++|+
T Consensus       376 L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~  455 (520)
T 2z7x_B          376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQ  455 (520)
T ss_dssp             CCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSC
T ss_pred             CCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCcccccchhhhcCCCCCEEECCCCc
Confidence            999999999977757654 7789999999999999887777655689999999999999999988899999999999999


Q ss_pred             CCccCccc-ccCCCCCCEEeccCCcCCCCCC
Q 025516          213 RLKSLPSS-LCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       213 ~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      +. .+|.. +..+++|++|++++|++.+..+
T Consensus       456 l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          456 LK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            77 56654 8999999999999999887665

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.82  E-value=1.2e-20  Score=155.64  Aligned_cols=186  Identities=14%  Similarity=0.031  Sum_probs=132.5

Q ss_pred             chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccccCcCC-
Q 025516           55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVK-  133 (251)
Q Consensus        55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~~~~-  133 (251)
                      ...+..+++|+.|++++|.+.+..+..+..+.+++.++++.|.+.+     .+....+++|++|++++|++.+++..++ 
T Consensus        27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~-----~~~~~~l~~L~~L~Ls~n~l~~l~~~~~L  101 (317)
T 3o53_A           27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE-----TLDLESLSTLRTLDLNNNYVQELLVGPSI  101 (317)
T ss_dssp             HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEE-----EEEETTCTTCCEEECCSSEEEEEEECTTC
T ss_pred             HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCc-----chhhhhcCCCCEEECcCCccccccCCCCc
Confidence            4456677899999999999998877788888887777777776654     2223357788888888887776655554 


Q ss_pred             --------------------ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc---cCCccEEEccccCC
Q 025516          134 --------------------LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS---SGNIGQLFLSGTAI  190 (251)
Q Consensus       134 --------------------L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~L~~L~l~~n~i  190 (251)
                                          |++|++++|.+.+..+..++.+++|++|++++|.+.+..+...   +++|++|++++|.+
T Consensus       102 ~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l  181 (317)
T 3o53_A          102 ETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI  181 (317)
T ss_dssp             CEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred             CEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcC
Confidence                                5555555555444445566677788888888887665444322   57888888888888


Q ss_pred             ccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          191 EELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       191 ~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      +.+|.. ..+++|+.|++++|.+.+ +|..+..+++|++|++++|.+. .+|..++.+
T Consensus       182 ~~~~~~-~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l  236 (317)
T 3o53_A          182 YDVKGQ-VVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (317)
T ss_dssp             CEEECC-CCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             cccccc-cccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcC
Confidence            877543 347888888888888654 4555888899999999987655 577766544

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.82  E-value=2.8e-19  Score=161.61  Aligned_cols=187  Identities=19%  Similarity=0.152  Sum_probs=114.2

Q ss_pred             CchhhhcCCCccEEEeecccCCCCCc-cccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccc------
Q 025516           54 NPNTFAKMRKLRFLKFYSSSFNGENR-CKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIE------  126 (251)
Q Consensus        54 ~~~~~~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~------  126 (251)
                      .+.+|..+++|+.|++++|.+.+..+ ..+..+..++.++++.|.+.+.....+.   .+++|+.|++++|.+.      
T Consensus       397 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~---~~~~L~~L~l~~n~l~~~~~~p  473 (680)
T 1ziw_A          397 ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA---LVPSLQRLMLRRVALKNVDSSP  473 (680)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTT---TCTTCCEEECTTSCCBCTTCSS
T ss_pred             ChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhh---cCcccccchhccccccccccCC
Confidence            35677777788888888777765333 4566666666666666655442222221   4566666666666553      


Q ss_pred             -cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCC----Cc------cccCCccEEEccccCCccCCc
Q 025516          127 -QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRL----PE------ISSGNIGQLFLSGTAIEELPS  195 (251)
Q Consensus       127 -~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~----~~------~~~~~L~~L~l~~n~i~~lp~  195 (251)
                       .+..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..    |.      ..+++|++|++++|+++.+|.
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~  553 (680)
T 1ziw_A          474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV  553 (680)
T ss_dssp             CTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCH
Confidence             2344556777777777655544555666777777777777654321    11      115667777777777776665


Q ss_pred             -ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCCh
Q 025516          196 -SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD  243 (251)
Q Consensus       196 -~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~  243 (251)
                       .+.++++|+.|++++|++.+..+..+..+++|+.|++++|.+.+..|.
T Consensus       554 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~  602 (680)
T 1ziw_A          554 EVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK  602 (680)
T ss_dssp             TTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHH
T ss_pred             HHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChh
Confidence             356677777777777776554445566777777777777655544433

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=9.3e-20  Score=149.80  Aligned_cols=189  Identities=19%  Similarity=0.142  Sum_probs=106.3

Q ss_pred             eEEEEeecCCcccccCCchhh--hcCCCccEEEeecccCCCCCc----cccccCCcceecceeEEeeccCCCCCCCC-CC
Q 025516           38 IEGICLDLSKVKEIPLNPNTF--AKMRKLRFLKFYSSSFNGENR----CKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH  110 (251)
Q Consensus        38 ~~~~~l~~~~~~~~~~~~~~~--~~l~~L~~L~l~~n~~~~~~~----~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~  110 (251)
                      ++.+.+..+.+...  .+..+  ..+++|+.|++++|.+.+..+    ..+..+..++.++++.|.     +..++. .+
T Consensus        93 L~~L~l~~n~l~~~--~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~-----l~~~~~~~~  165 (310)
T 4glp_A           93 LKELTLEDLKITGT--MPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAH-----SPAFSCEQV  165 (310)
T ss_dssp             CCEEEEESCCCBSC--CCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCS-----SCCCCTTSC
T ss_pred             eeEEEeeCCEeccc--hhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCC-----cchhhHHHh
Confidence            45555544443322  23333  556666666666666554222    112223333333333333     333332 22


Q ss_pred             -CcCCceEeecCCCcccc---------ccCcCCccEEEcCCCcCCccccC----ccccCCCccEEecCCCCCCCCCCccc
Q 025516          111 -SAEKLMFLEVPNSDIEQ---------LWNSVKLVILNLSGSKSLKSLPA----GIFNLEFLTELDLSGCSKLKRLPEIS  176 (251)
Q Consensus       111 -~l~~L~~L~l~~n~i~~---------l~~~~~L~~L~l~~n~~~~~~~~----~~~~l~~L~~L~l~~n~~~~~~~~~~  176 (251)
                       .+++|++|++++|++..         +..+++|++|++++|.+. .++.    .++.+++|++|++++|.+.+..|...
T Consensus       166 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~  244 (310)
T 4glp_A          166 RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSA  244 (310)
T ss_dssp             CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCC
T ss_pred             ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhH
Confidence             56777777777776531         135666777777777643 2222    13456777777777777666544322


Q ss_pred             -----cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC
Q 025516          177 -----SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL  238 (251)
Q Consensus       177 -----~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~  238 (251)
                           +++|++|++++|+++.+|..+.  ++|+.|++++|++.+. |. +..+++|+.|++++|++.
T Consensus       245 ~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          245 PRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             SSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred             HhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence                 2577777777777777776553  6777777777776542 33 566677777777777654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.81  E-value=5e-20  Score=151.57  Aligned_cols=179  Identities=17%  Similarity=0.152  Sum_probs=138.3

Q ss_pred             cCCCccEEEeecccCCCCCcccc--ccCCcceecceeEEeeccCCCCCCCCCC-Cc-----CCceEeecCCCcccc----
Q 025516           60 KMRKLRFLKFYSSSFNGENRCKV--SHLQDLRFAEVKYLHWHGYPLKSLPSNH-SA-----EKLMFLEVPNSDIEQ----  127 (251)
Q Consensus        60 ~l~~L~~L~l~~n~~~~~~~~~l--~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l-----~~L~~L~l~~n~i~~----  127 (251)
                      ++++|++|++++|.+.+..+..+  ..+.+++.++++.|.+.+     +|..+ .+     ++|++|++++|++..    
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-----~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~  167 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-----RDAWLAELQQWLKPGLKVLSIAQAHSLNFSCE  167 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSS-----SSSHHHHHHTTCCTTCCEEEEESCSCCCCCTT
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcc-----hhHHHHHHHHhhcCCCcEEEeeCCCCccchHH
Confidence            68999999999999998777765  677777777776666654     34433 23     899999999999864    


Q ss_pred             -ccCcCCccEEEcCCCcCCcc--ccCcc--ccCCCccEEecCCCCCCC--CCCcc---ccCCccEEEccccCCccCC--c
Q 025516          128 -LWNSVKLVILNLSGSKSLKS--LPAGI--FNLEFLTELDLSGCSKLK--RLPEI---SSGNIGQLFLSGTAIEELP--S  195 (251)
Q Consensus       128 -l~~~~~L~~L~l~~n~~~~~--~~~~~--~~l~~L~~L~l~~n~~~~--~~~~~---~~~~L~~L~l~~n~i~~lp--~  195 (251)
                       +..+++|++|++++|.+.+.  .|..+  +.+++|++|++++|.+.+  .++..   .+++|++|++++|.++..+  .
T Consensus       168 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  247 (312)
T 1wwl_A          168 QVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP  247 (312)
T ss_dssp             TCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS
T ss_pred             HhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh
Confidence             45678999999999987664  34344  789999999999998763  22221   2589999999999999654  3


Q ss_pred             ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          196 SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       196 ~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      .+..+++|+.|++++|.+. .+|..+.  ++|++|++++|.+.+ +|. ++.+
T Consensus       248 ~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~-~p~-~~~l  295 (312)
T 1wwl_A          248 SCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDR-NPS-PDEL  295 (312)
T ss_dssp             CCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCS-CCC-TTTS
T ss_pred             hhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCC-Chh-HhhC
Confidence            5667899999999999976 7787776  899999999987665 476 5544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.81  E-value=2.9e-19  Score=165.21  Aligned_cols=91  Identities=14%  Similarity=0.132  Sum_probs=56.1

Q ss_pred             chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC--C-CcCCceEeecCCCcccc----
Q 025516           55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN--H-SAEKLMFLEVPNSDIEQ----  127 (251)
Q Consensus        55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~--~-~l~~L~~L~l~~n~i~~----  127 (251)
                      +..|.++++|++|++++|.+.+..+..|..+.+|+.++|+.|.+.+    .++..  + .+++|++|++++|.+..    
T Consensus        66 ~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~  141 (844)
T 3j0a_A           66 KEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSD----AVLKDGYFRNLKALTRLDLSKNQIRSLYLH  141 (844)
T ss_dssp             TTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSS----CCSTTCCCSSCSSCCEEEEESCCCCCCCCC
T ss_pred             HHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCc----ccccCccccccCCCCEEECCCCcccccccc
Confidence            5566666666666666666666556666666666666665555544    12221  2 56777777777777643    


Q ss_pred             --ccCcCCccEEEcCCCcCCcccc
Q 025516          128 --LWNSVKLVILNLSGSKSLKSLP  149 (251)
Q Consensus       128 --l~~~~~L~~L~l~~n~~~~~~~  149 (251)
                        +..+++|++|++++|.+.+..+
T Consensus       142 ~~~~~L~~L~~L~Ls~N~i~~~~~  165 (844)
T 3j0a_A          142 PSFGKLNSLKSIDFSSNQIFLVCE  165 (844)
T ss_dssp             GGGGTCSSCCEEEEESSCCCCCCS
T ss_pred             hhHhhCCCCCEEECCCCcCCeeCH
Confidence              4456777777777776554433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.81  E-value=7.6e-19  Score=155.54  Aligned_cols=149  Identities=17%  Similarity=0.125  Sum_probs=106.1

Q ss_pred             eeEEeeccCCCCC-CCCCC-CcCCceEeecCCCcccc-------ccCcCCccEEEcCCCcCCccccCc-cccCCCccEEe
Q 025516           93 VKYLHWHGYPLKS-LPSNH-SAEKLMFLEVPNSDIEQ-------LWNSVKLVILNLSGSKSLKSLPAG-IFNLEFLTELD  162 (251)
Q Consensus        93 L~~~~l~~~~~~~-~~~~~-~l~~L~~L~l~~n~i~~-------l~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~  162 (251)
                      |++++++++.+.. +|..+ .+++|++|++++|++..       +..+++|++|++++|.+.+.+|.. +..+++|++|+
T Consensus       355 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~  434 (562)
T 3a79_B          355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN  434 (562)
T ss_dssp             CCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred             ceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence            3334444444433 33333 56777777777777764       345667888888877766545543 56677788888


Q ss_pred             cCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCccc-ccCCCCCCEEeccCCcCCCCC
Q 025516          163 LSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSS-LCKLKSLELLSLRGCSNLQRL  241 (251)
Q Consensus       163 l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~-~~~l~~L~~L~l~~n~~~~~~  241 (251)
                      +++|.+.+..+....++|++|++++|+++.+|..+..+++|+.|++++|++. .+|.. +..+++|+.|++++|+..+..
T Consensus       435 l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          435 LSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             CCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             CCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            8888776655554447889999999988888887778899999999998876 55654 888899999999998887765


Q ss_pred             C
Q 025516          242 P  242 (251)
Q Consensus       242 p  242 (251)
                      |
T Consensus       514 ~  514 (562)
T 3a79_B          514 P  514 (562)
T ss_dssp             H
T ss_pred             c
Confidence            5

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=1.8e-19  Score=142.54  Aligned_cols=125  Identities=13%  Similarity=0.013  Sum_probs=54.1

Q ss_pred             CcCCceEeecCC-Ccccccc-----CcCCccEEEcCCCcCCccccCccccCCCcc---EEecCCC-CCCCCCCccc--cC
Q 025516          111 SAEKLMFLEVPN-SDIEQLW-----NSVKLVILNLSGSKSLKSLPAGIFNLEFLT---ELDLSGC-SKLKRLPEIS--SG  178 (251)
Q Consensus       111 ~l~~L~~L~l~~-n~i~~l~-----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~---~L~l~~n-~~~~~~~~~~--~~  178 (251)
                      ++++|++|++++ |++..++     .+++|++|++++|.+.+ +|. ++.+++|+   +|++++| .+.+..+..+  ++
T Consensus        78 ~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~  155 (239)
T 2xwt_C           78 NLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLC  155 (239)
T ss_dssp             SCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTB
T ss_pred             CCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchh
Confidence            344555555554 4443222     33445555555544222 333 44444444   5555555 2222111111  34


Q ss_pred             Ccc-EEEccccCCccCCcccccCccCCEEeccCCc-CCccCcccccCC-CCCCEEeccCCcC
Q 025516          179 NIG-QLFLSGTAIEELPSSFELLLRLWLLDLSDCK-RLKSLPSSLCKL-KSLELLSLRGCSN  237 (251)
Q Consensus       179 ~L~-~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~l-~~L~~L~l~~n~~  237 (251)
                      +|+ +|++++|+++.+|......++|+.|++++|+ +....+..+..+ ++|+.|++++|++
T Consensus       156 ~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l  217 (239)
T 2xwt_C          156 NETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSV  217 (239)
T ss_dssp             SSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCC
T ss_pred             cceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcc
Confidence            454 5555555555444433222445555555553 333223344444 5555555555433

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.80  E-value=1.8e-19  Score=159.57  Aligned_cols=100  Identities=19%  Similarity=0.274  Sum_probs=62.0

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL  115 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L  115 (251)
                      ..++.+.+..+.+.  .+.+..|.++++|++|++++|.+++..+.+|..+..|+.+++++|.+     ..+|.. .+++|
T Consensus        52 ~~L~~L~Ls~N~i~--~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l-----~~lp~~-~l~~L  123 (562)
T 3a79_B           52 PRTKALSLSQNSIS--ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-----QNISCC-PMASL  123 (562)
T ss_dssp             TTCCEEECCSSCCC--CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC-----CEECSC-CCTTC
T ss_pred             CCcCEEECCCCCcc--ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC-----CccCcc-ccccC
Confidence            45566666555544  34467888888999999988888877777777776666555544443     334444 55666


Q ss_pred             eEeecCCCcccc------ccCcCCccEEEcCCCc
Q 025516          116 MFLEVPNSDIEQ------LWNSVKLVILNLSGSK  143 (251)
Q Consensus       116 ~~L~l~~n~i~~------l~~~~~L~~L~l~~n~  143 (251)
                      ++|++++|++..      +..+++|++|++++|.
T Consensus       124 ~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~  157 (562)
T 3a79_B          124 RHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAK  157 (562)
T ss_dssp             SEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSB
T ss_pred             CEEECCCCCccccCchHhhcccCcccEEecCCCc
Confidence            666666665543      2234455555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.80  E-value=2.7e-18  Score=148.34  Aligned_cols=191  Identities=17%  Similarity=0.171  Sum_probs=109.0

Q ss_pred             CCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCC
Q 025516           35 TEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEK  114 (251)
Q Consensus        35 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~  114 (251)
                      ..+++.+.+..+.+...   | .|+.+++|++|++++|.+++..   +..+.+++.++++.|.+.+     ++ ...+++
T Consensus        41 l~~L~~L~Ls~n~l~~~---~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L~Ls~N~l~~-----~~-~~~l~~  107 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM---T-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYLACDSNKLTN-----LD-VTPLTK  107 (457)
T ss_dssp             HTTCCEEECCSSCCCCC---T-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEEECCSSCCSC-----CC-CTTCTT
T ss_pred             cCCCCEEEccCCCcccC---h-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEEECcCCCCce-----ee-cCCCCc
Confidence            34566666666655543   3 5788888888888888877642   5555555555555554443     22 224566


Q ss_pred             ceEeecCCCccccc--cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc----------------
Q 025516          115 LMFLEVPNSDIEQL--WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS----------------  176 (251)
Q Consensus       115 L~~L~l~~n~i~~l--~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----------------  176 (251)
                      |++|++++|++.++  ..+++|++|++++|.+.+ ++  ++.+++|++|++++|...+.++-..                
T Consensus       108 L~~L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~  184 (457)
T 3bz5_A          108 LTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE  184 (457)
T ss_dssp             CCEEECCSSCCSCCCCTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC
T ss_pred             CCEEECCCCcCCeecCCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce
Confidence            66666666666543  344556666666665433 21  4444555555555554333332222                


Q ss_pred             -----cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhh
Q 025516          177 -----SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLA  246 (251)
Q Consensus       177 -----~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~  246 (251)
                           +++|+.|++++|.++.++  ++.+++|+.|++++|++.+ +|  ++.+++|++|++++|++.+.-+..+.
T Consensus       185 l~l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~  254 (457)
T 3bz5_A          185 LDVSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLS  254 (457)
T ss_dssp             CCCTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCT
T ss_pred             eccccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCC
Confidence                 445555555555555442  5566667777777766554 44  66677777777777666554333333

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.80  E-value=6.1e-19  Score=142.46  Aligned_cols=180  Identities=18%  Similarity=0.119  Sum_probs=140.3

Q ss_pred             CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-CcCCceEeecCCCcccc-----ccCcCCc
Q 025516           62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAEKLMFLEVPNSDIEQ-----LWNSVKL  134 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~i~~-----l~~~~~L  134 (251)
                      ++|+.|++++|.+.+..+..+..+.+++.++++.|.+.+     ++. .+ .+++|++|++++|.+..     +..+++|
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQT-----IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCE-----ECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCc-----cCHHHccCCcCCCEEECCCCccCccChhhhcCCccc
Confidence            579999999999988777677777777766666665544     443 23 68999999999999864     5567899


Q ss_pred             cEEEcCCCcCCccccCccccCCCccEEecCCCCCCC-CCCccc--cCCccEEEccccCCccCCc-ccccCccCC----EE
Q 025516          135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLK-RLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLW----LL  206 (251)
Q Consensus       135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~----~L  206 (251)
                      ++|++++|.+.+..+..++.+++|++|++++|.+.+ .+|...  +++|++|++++|+++.++. .+..+++|+    .|
T Consensus       103 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (276)
T ss_dssp             CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEE
T ss_pred             cEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceee
Confidence            999999998776666678899999999999998776 356544  7999999999999997764 566667776    89


Q ss_pred             eccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChh-hhhc
Q 025516          207 DLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR-LASY  248 (251)
Q Consensus       207 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l  248 (251)
                      ++++|.+.+..+. .....+|+.|++++|.+. .+|.+ ++.+
T Consensus       183 ~ls~n~l~~~~~~-~~~~~~L~~L~L~~n~l~-~~~~~~~~~l  223 (276)
T 2z62_A          183 DLSLNPMNFIQPG-AFKEIRLKELALDTNQLK-SVPDGIFDRL  223 (276)
T ss_dssp             ECCSSCCCEECTT-SSCSCCEEEEECCSSCCS-CCCTTTTTTC
T ss_pred             ecCCCcccccCcc-ccCCCcccEEECCCCcee-ecCHhHhccc
Confidence            9999997655444 445568999999998866 45543 4544

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.80  E-value=5.2e-19  Score=139.92  Aligned_cols=190  Identities=15%  Similarity=0.170  Sum_probs=147.5

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeeccc-CCCCCccccccCCcceecceeE-EeeccCCCCCCCCC-C-C
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSS-FNGENRCKVSHLQDLRFAEVKY-LHWHGYPLKSLPSN-H-S  111 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~l~~l~~l~~l~L~~-~~l~~~~~~~~~~~-~-~  111 (251)
                      ..++.+.+..+.+..+.  +..|.++++|+.|++++|. ++...+..+..+.+++.+++++ |.+.     .++.. + +
T Consensus        31 ~~l~~L~l~~n~l~~i~--~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-----~i~~~~f~~  103 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIP--SHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-----YIDPDALKE  103 (239)
T ss_dssp             TTCCEEEEESCCCSEEC--TTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-----EECTTSEEC
T ss_pred             CcccEEEEeCCcceEEC--HHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-----EcCHHHhCC
Confidence            36777777777766543  6689999999999999997 8776666787887777777766 5554     44432 2 6


Q ss_pred             cCCceEeecCCCcccccc---CcCCcc---EEEcCCC-cCCccccCccccCCCcc-EEecCCCCCCCCCCccc--cCCcc
Q 025516          112 AEKLMFLEVPNSDIEQLW---NSVKLV---ILNLSGS-KSLKSLPAGIFNLEFLT-ELDLSGCSKLKRLPEIS--SGNIG  181 (251)
Q Consensus       112 l~~L~~L~l~~n~i~~l~---~~~~L~---~L~l~~n-~~~~~~~~~~~~l~~L~-~L~l~~n~~~~~~~~~~--~~~L~  181 (251)
                      +++|++|++++|++..++   .+.+|+   +|++++| .+.+..+..+.++++|+ +|++++|.+. .+|...  .++|+
T Consensus       104 l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~  182 (239)
T 2xwt_C          104 LPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD  182 (239)
T ss_dssp             CTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEE
T ss_pred             CCCCCEEeCCCCCCccccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCC
Confidence            899999999999887655   455676   9999999 65544455688999999 9999999876 555432  46899


Q ss_pred             EEEccccC-CccCCc-ccccC-ccCCEEeccCCcCCccCcccccCCCCCCEEeccCCc
Q 025516          182 QLFLSGTA-IEELPS-SFELL-LRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCS  236 (251)
Q Consensus       182 ~L~l~~n~-i~~lp~-~~~~l-~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~  236 (251)
                      +|++++|. ++.+|. .+..+ ++|+.|++++|++. .+|..  .+++|+.|+++++.
T Consensus       183 ~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             EEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTTC-
T ss_pred             EEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccCcc
Confidence            99999995 998865 57888 99999999999976 45543  78899999998863

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.80  E-value=2.8e-18  Score=150.41  Aligned_cols=183  Identities=17%  Similarity=0.211  Sum_probs=129.8

Q ss_pred             CCccEEEeecccCCCCCcccc-----ccCCcceecce---------------------eEEeeccCCCCCCCCCCCcCCc
Q 025516           62 RKLRFLKFYSSSFNGENRCKV-----SHLQDLRFAEV---------------------KYLHWHGYPLKSLPSNHSAEKL  115 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l-----~~l~~l~~l~L---------------------~~~~l~~~~~~~~~~~~~l~~L  115 (251)
                      ++|+.|++++|.+.+..+..+     ..+..++.+++                     +.++++++.+..++....+++|
T Consensus       247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L  326 (520)
T 2z7x_B          247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPF  326 (520)
T ss_dssp             SSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCC
T ss_pred             CcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcc
Confidence            366677777776666555555     55555554443                     3333444444333322357888


Q ss_pred             eEeecCCCcccc-----ccCcCCccEEEcCCCcCCc--cccCccccCCCccEEecCCCCCCCCCCccc---cCCccEEEc
Q 025516          116 MFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLK--SLPAGIFNLEFLTELDLSGCSKLKRLPEIS---SGNIGQLFL  185 (251)
Q Consensus       116 ~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~L~~L~l  185 (251)
                      ++|++++|++.+     +..+++|++|++++|.+.+  .+|..++++++|++|++++|.+.+.+|...   +++|++|++
T Consensus       327 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L  406 (520)
T 2z7x_B          327 LHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM  406 (520)
T ss_dssp             CEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred             cEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence            888998888764     4567789999999888665  556778888899999999988777566432   678999999


Q ss_pred             cccCCc-cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChh-hhhc
Q 025516          186 SGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR-LASY  248 (251)
Q Consensus       186 ~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l  248 (251)
                      ++|.++ .+|..+.  ++|+.|++++|++. .+|..+..+++|++|++++|.+. .+|.. ++.+
T Consensus       407 s~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l  467 (520)
T 2z7x_B          407 SSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRL  467 (520)
T ss_dssp             CSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             cCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccC
Confidence            999886 4554443  68999999999876 78888889999999999998666 68875 5544

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=4.1e-19  Score=157.13  Aligned_cols=112  Identities=24%  Similarity=0.247  Sum_probs=60.0

Q ss_pred             cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCC-CCCCccc--cCCccEEEccccCCccC-CcccccCccCCEE
Q 025516          131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKL-KRLPEIS--SGNIGQLFLSGTAIEEL-PSSFELLLRLWLL  206 (251)
Q Consensus       131 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~--~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L  206 (251)
                      +++|++|++++|.+.+..|..++++++|++|++++|.+. +.+|...  +++|++|++++|+++.+ |..++.+++|+.|
T Consensus       420 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  499 (570)
T 2z63_A          420 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL  499 (570)
T ss_dssp             CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence            344555555555444444444555555555555555443 2333322  45566666666655543 4455555666666


Q ss_pred             eccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          207 DLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       207 ~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      ++++|++.+..|..+..+++|+.|++++|++.+..|
T Consensus       500 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          500 NMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             eCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            666665555544555566666666666666555554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.80  E-value=1.9e-19  Score=159.25  Aligned_cols=204  Identities=19%  Similarity=0.206  Sum_probs=158.7

Q ss_pred             ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCc
Q 025516           37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKL  115 (251)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L  115 (251)
                      .++.+.+..+.+..+.  .   ..+++|+.|++++|.+.+..+.  ..+..++.++++.|.+.+..  ..+..+ .+++|
T Consensus       305 ~L~~L~l~~n~~~~l~--~---~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~~~L  375 (570)
T 2z63_A          305 GWQHLELVNCKFGQFP--T---LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKG--CCSQSDFGTTSL  375 (570)
T ss_dssp             CCSEEEEESCBCSSCC--B---CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEE--EEEHHHHTCSCC
T ss_pred             CccEEeeccCcccccC--c---ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccc--cccccccccCcc
Confidence            5666667666655332  2   4789999999999987754333  44555555555555444310  012222 68999


Q ss_pred             eEeecCCCcccc----ccCcCCccEEEcCCCcCCcccc-CccccCCCccEEecCCCCCCCCCCccc--cCCccEEEcccc
Q 025516          116 MFLEVPNSDIEQ----LWNSVKLVILNLSGSKSLKSLP-AGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGT  188 (251)
Q Consensus       116 ~~L~l~~n~i~~----l~~~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n  188 (251)
                      ++|++++|.+..    +..+++|++|++++|.+.+..| ..+.++++|++|++++|.+.+..+..+  +++|++|++++|
T Consensus       376 ~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  455 (570)
T 2z63_A          376 KYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN  455 (570)
T ss_dssp             CEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             CEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCC
Confidence            999999999864    5578899999999998766655 467889999999999998877777654  899999999999


Q ss_pred             CCc--cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          189 AIE--ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       189 ~i~--~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      .++  .+|..+..+++|+.|++++|++.+..|..++.+++|++|++++|.+.+..|..+++++
T Consensus       456 ~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~  518 (570)
T 2z63_A          456 SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLT  518 (570)
T ss_dssp             EEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             cCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhccc
Confidence            997  5898999999999999999999888899999999999999999988876666666554

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.80  E-value=1.8e-18  Score=149.81  Aligned_cols=123  Identities=23%  Similarity=0.200  Sum_probs=56.9

Q ss_pred             cCCceEeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEcccc
Q 025516          112 AEKLMFLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGT  188 (251)
Q Consensus       112 l~~L~~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n  188 (251)
                      +++|+.|++++|.+..   +..+++|++|++++|.+.+..+  ++.+++|++|++++|.+.+..+...+++|++|++++|
T Consensus       264 l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n  341 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNN  341 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSS
T ss_pred             CCCCCEEECCCCccCccccccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCC
Confidence            3444444444444332   2233344444444444322211  3444455555555554444333222455555555555


Q ss_pred             CCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516          189 AIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       189 ~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      .++.++ .+..+++|+.|++++|++.+..|  +..+++|+.|++++|.+.+
T Consensus       342 ~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          342 KVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             CCCCCG-GGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             ccCCch-hhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            555442 34455555555555555544433  4555555555555554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.80  E-value=2.3e-18  Score=143.45  Aligned_cols=189  Identities=19%  Similarity=0.206  Sum_probs=105.3

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL  115 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L  115 (251)
                      .+++.+.+..+.+..+.    .+..+++|++|++++|.+....+  +..+.+++.++++.|.     +..++....+++|
T Consensus        44 ~~L~~L~l~~~~i~~~~----~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~-----i~~~~~~~~l~~L  112 (347)
T 4fmz_A           44 ESITKLVVAGEKVASIQ----GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNK-----ITDISALQNLTNL  112 (347)
T ss_dssp             TTCSEEECCSSCCCCCT----TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC-----CCCCGGGTTCTTC
T ss_pred             ccccEEEEeCCccccch----hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCc-----ccCchHHcCCCcC
Confidence            44556666555544332    46778888888888887765433  5555555444444443     3334433356777


Q ss_pred             eEeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccC--------------
Q 025516          116 MFLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSG--------------  178 (251)
Q Consensus       116 ~~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--------------  178 (251)
                      ++|++++|.+..   +..+++|++|++++|......+. ++.+++|++|++++|......+-..++              
T Consensus       113 ~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~  191 (347)
T 4fmz_A          113 RELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED  191 (347)
T ss_dssp             SEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC
T ss_pred             CEEECcCCcccCchhhccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc
Confidence            777777776653   33455666666666643433332 445555555555555433322211244              


Q ss_pred             --------CccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516          179 --------NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       179 --------~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                              +|+.|++++|.++.++. +..+++|+.|++++|.+.+..+  +..+++|++|++++|.+.+
T Consensus       192 ~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~  257 (347)
T 4fmz_A          192 ISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD  257 (347)
T ss_dssp             CGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred             cccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCC
Confidence                    44455555554444433 5566677777777776544332  6677777777777765543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.80  E-value=7.7e-19  Score=156.92  Aligned_cols=72  Identities=24%  Similarity=0.241  Sum_probs=54.9

Q ss_pred             cCCccEEEccccCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          177 SGNIGQLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       177 ~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      +++|++|++++|+++.+ |..+.++++|+.|+|++|++.+..|..++.+++|++|++++|++.+..|..++.+
T Consensus       493 l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  565 (635)
T 4g8a_A          493 LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF  565 (635)
T ss_dssp             CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCC
T ss_pred             ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhh
Confidence            56788888888888765 4467788888888888888777767778888888888888887777777666554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.79  E-value=3.6e-18  Score=147.57  Aligned_cols=190  Identities=16%  Similarity=0.144  Sum_probs=127.8

Q ss_pred             CCCceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcC
Q 025516           34 GTEKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAE  113 (251)
Q Consensus        34 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~  113 (251)
                      ...+++.+.+..+.+..+   +  ++.+++|++|++++|.+.+..   +..+..++.++++.|.+.+     ++ ...++
T Consensus        62 ~l~~L~~L~Ls~n~l~~~---~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L~L~~N~l~~-----l~-~~~l~  127 (457)
T 3bz5_A           62 KLTGLTKLICTSNNITTL---D--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYLNCDTNKLTK-----LD-VSQNP  127 (457)
T ss_dssp             GCTTCSEEECCSSCCSCC---C--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECCSSCCSC-----CC-CTTCT
T ss_pred             ccCCCCEEEccCCcCCeE---c--cccCCCCCEEECcCCCCceee---cCCCCcCCEEECCCCcCCe-----ec-CCCCC
Confidence            445677777777666554   2  677888888888888877642   5555555555555554433     22 22455


Q ss_pred             CceEeecCCCcccc------------------------ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCC
Q 025516          114 KLMFLEVPNSDIEQ------------------------LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKL  169 (251)
Q Consensus       114 ~L~~L~l~~n~i~~------------------------l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~  169 (251)
                      +|++|++++|++.+                        +..+++|++|++++|.+.+ +|  ++.+++|++|++++|.+.
T Consensus       128 ~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          128 LLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             TCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCSSCCS
T ss_pred             cCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcCCcCC
Confidence            55555555555543                        3344456666666655333 33  566777777777777655


Q ss_pred             CCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCC-------CCCEEeccCCcCCCCCC
Q 025516          170 KRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLK-------SLELLSLRGCSNLQRLP  242 (251)
Q Consensus       170 ~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~-------~L~~L~l~~n~~~~~~p  242 (251)
                      +. +-..+++|++|++++|+++.+|  ++.+++|+.|++++|++.+..+..+.++.       +|+.|++++|...+.+|
T Consensus       205 ~~-~l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~  281 (457)
T 3bz5_A          205 KL-DLNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ  281 (457)
T ss_dssp             CC-CCTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred             ee-ccccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence            53 3333789999999999999988  88999999999999998776555555554       66777888888777777


Q ss_pred             h
Q 025516          243 D  243 (251)
Q Consensus       243 ~  243 (251)
                      .
T Consensus       282 ~  282 (457)
T 3bz5_A          282 A  282 (457)
T ss_dssp             C
T ss_pred             c
Confidence            3

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.79  E-value=3.5e-19  Score=153.75  Aligned_cols=192  Identities=20%  Similarity=0.184  Sum_probs=108.2

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcce-------------e------------
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLR-------------F------------   90 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~-------------~------------   90 (251)
                      ..++.+.+..+.++.+   |..|+++++|++|++++|.+.+..|..++.+..++             .            
T Consensus        11 ~~L~~L~l~~n~l~~i---P~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp   87 (454)
T 1jl5_A           11 TFLQEPLRHSSNLTEM---PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLP   87 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCC
T ss_pred             ccchhhhcccCchhhC---ChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCC
Confidence            4455555555555322   55677777777777777777666666555544331             1            


Q ss_pred             ---cceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccccCc-CCccEEEcCCCcCCccccCccccCCCccEEecCCC
Q 025516           91 ---AEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNS-VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGC  166 (251)
Q Consensus        91 ---l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~~-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n  166 (251)
                         ..++.++++++.+..+|..  +.+|++|++++|++.+++.. ++|++|++++|.+.+ +| .++++++|++|++++|
T Consensus        88 ~~~~~L~~L~l~~n~l~~lp~~--~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A           88 ELPPHLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             SCCTTCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred             CCcCCCCEEEccCCcCCccccc--cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence               1244444445555555532  36788888888888777666 478888888887554 67 4888888888888888


Q ss_pred             CCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCc-------------------cCcccccCCCCC
Q 025516          167 SKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLK-------------------SLPSSLCKLKSL  227 (251)
Q Consensus       167 ~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~-------------------~~p~~~~~l~~L  227 (251)
                      .+.+ +|.. ..+|++|++++|.++.+| .++++++|+.|++++|.+.+                   .+| .++.+++|
T Consensus       164 ~l~~-lp~~-~~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~n~l~~lp-~~~~l~~L  239 (454)
T 1jl5_A          164 SLKK-LPDL-PPSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELP-ELQNLPFL  239 (454)
T ss_dssp             CCSC-CCCC-CTTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCSSCCSSCC-CCTTCTTC
T ss_pred             cCcc-cCCC-cccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCCcCcccEEECcCCcCCccc-ccCCCCCC
Confidence            7654 4432 357777777777777666 45666666666666655432                   334 25566666


Q ss_pred             CEEeccCCcCC
Q 025516          228 ELLSLRGCSNL  238 (251)
Q Consensus       228 ~~L~l~~n~~~  238 (251)
                      ++|++++|.+.
T Consensus       240 ~~L~l~~N~l~  250 (454)
T 1jl5_A          240 TTIYADNNLLK  250 (454)
T ss_dssp             CEEECCSSCCS
T ss_pred             CEEECCCCcCC
Confidence            66666665444

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.79  E-value=6.7e-19  Score=162.80  Aligned_cols=178  Identities=19%  Similarity=0.184  Sum_probs=91.8

Q ss_pred             chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCCceEeecCCCccccccCcC
Q 025516           55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEKLMFLEVPNSDIEQLWNSV  132 (251)
Q Consensus        55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~L~~L~l~~n~i~~l~~~~  132 (251)
                      +..|.++++|+.|++++|.+.+..+..+..+..++.++++.|.+.     .++.. + .+++|++|++++|.+..++.++
T Consensus       307 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-----~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~  381 (844)
T 3j0a_A          307 DEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA-----IIQDQTFKFLEKLQTLDLRDNALTTIHFIP  381 (844)
T ss_dssp             TTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCC-----CCCSSCSCSCCCCCEEEEETCCSCCCSSCC
T ss_pred             hHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCC-----ccChhhhcCCCCCCEEECCCCCCCcccCCC
Confidence            445555555555555555555544444554444444444444332     23221 2 4666677777766666655555


Q ss_pred             CccEEEcCCCcCCccccC----------------------ccccCCCccEEecCCCCCCCCCCcc---ccCCccEEEccc
Q 025516          133 KLVILNLSGSKSLKSLPA----------------------GIFNLEFLTELDLSGCSKLKRLPEI---SSGNIGQLFLSG  187 (251)
Q Consensus       133 ~L~~L~l~~n~~~~~~~~----------------------~~~~l~~L~~L~l~~n~~~~~~~~~---~~~~L~~L~l~~  187 (251)
                      +|+.|++++|.+. .+|.                      .++++++|++|++++|.+.+..+..   .+++|+.|++++
T Consensus       382 ~L~~L~l~~N~l~-~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~  460 (844)
T 3j0a_A          382 SIPDIFLSGNKLV-TLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGE  460 (844)
T ss_dssp             SCSEEEEESCCCC-CCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEES
T ss_pred             CcchhccCCCCcc-cccccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCC
Confidence            5555555555432 2221                      1235667777777777665432221   145555555555


Q ss_pred             cCCccC------CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC
Q 025516          188 TAIEEL------PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL  238 (251)
Q Consensus       188 n~i~~l------p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~  238 (251)
                      |.++..      +..+.++++|+.|++++|.+.+..|..+..+++|+.|++++|.+.
T Consensus       461 N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  517 (844)
T 3j0a_A          461 NMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT  517 (844)
T ss_dssp             CCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCS
T ss_pred             CccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCC
Confidence            555421      123445555555555555555544455555555555555555443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.79  E-value=6.6e-18  Score=134.60  Aligned_cols=155  Identities=21%  Similarity=0.213  Sum_probs=128.9

Q ss_pred             eEEeeccCCCCCCCCCCCcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCC
Q 025516           94 KYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSK  168 (251)
Q Consensus        94 ~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  168 (251)
                      +..+.+++.+..+|..+. .+++.|++++|++..     +..+++|++|++++|.+.+..+..+.++++|++|++++|.+
T Consensus        17 ~~l~~~~~~l~~~p~~~~-~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l   95 (251)
T 3m19_A           17 KEVDCQGKSLDSVPSGIP-ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL   95 (251)
T ss_dssp             TEEECTTCCCSSCCSCCC-TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             eEEecCCCCccccCCCCC-CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcc
Confidence            345666777778886553 789999999999964     45678999999999998777777789999999999999998


Q ss_pred             CCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhh
Q 025516          169 LKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRL  245 (251)
Q Consensus       169 ~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l  245 (251)
                      .+..+..+  +++|++|++++|.++.+|.. +..+++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..|..+
T Consensus        96 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  175 (251)
T 3m19_A           96 ASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF  175 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred             cccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHH
Confidence            76655543  89999999999999988875 5889999999999999877666689999999999999998876555566


Q ss_pred             hhcc
Q 025516          246 ASYR  249 (251)
Q Consensus       246 ~~l~  249 (251)
                      +.+.
T Consensus       176 ~~l~  179 (251)
T 3m19_A          176 DRLG  179 (251)
T ss_dssp             TTCT
T ss_pred             hCCC
Confidence            5543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.79  E-value=5.8e-19  Score=155.64  Aligned_cols=193  Identities=19%  Similarity=0.173  Sum_probs=133.5

Q ss_pred             ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCc---cccccCCcceecceeEEeeccCCCCCCCC----C
Q 025516           37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENR---CKVSHLQDLRFAEVKYLHWHGYPLKSLPS----N  109 (251)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~---~~l~~l~~l~~l~L~~~~l~~~~~~~~~~----~  109 (251)
                      +++.+.+..+.+.  .++...+..+++|+.|++++|.+.+..+   ..+..+.+++.+++++|     .++.++.    .
T Consensus       311 ~L~~L~l~~n~l~--~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-----~l~~~~~~~~~~  383 (549)
T 2z81_A          311 KVKRITVENSKVF--LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-----HLRSMQKTGEIL  383 (549)
T ss_dssp             TCCEEEEESSCCC--CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-----CCCCHHHHHHHG
T ss_pred             cceEEEeccCccc--cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC-----cccccccchhhh
Confidence            4455555554443  2223334568888888888887765332   22344444444444444     3333332    1


Q ss_pred             CCcCCceEeecCCCcccccc----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEc
Q 025516          110 HSAEKLMFLEVPNSDIEQLW----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFL  185 (251)
Q Consensus       110 ~~l~~L~~L~l~~n~i~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l  185 (251)
                      ..+++|++|++++|++..++    .+++|++|++++|.+ ..+|..+  .++|++|++++|.+.+..  ..+++|++|++
T Consensus       384 ~~l~~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l-~~l~~~~--~~~L~~L~Ls~N~l~~~~--~~l~~L~~L~L  458 (549)
T 2z81_A          384 LTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGI-RVVKTCI--PQTLEVLDVSNNNLDSFS--LFLPRLQELYI  458 (549)
T ss_dssp             GGCTTCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCC-SCCCTTS--CTTCSEEECCSSCCSCCC--CCCTTCCEEEC
T ss_pred             hcCCCCCEEECCCCCCccCChhhcccccccEEECCCCCc-ccccchh--cCCceEEECCCCChhhhc--ccCChhcEEEC
Confidence            25678888888888876554    456788888888763 3444433  357888888888766543  24689999999


Q ss_pred             cccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          186 SGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       186 ~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      ++|+++.+|. ...+++|+.|++++|++.+..|..++.+++|+.|++++|+..+..|
T Consensus       459 s~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          459 SRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             CSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9999999987 4678999999999999888888889999999999999999988887

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.79  E-value=1.2e-17  Score=144.69  Aligned_cols=179  Identities=18%  Similarity=0.199  Sum_probs=87.0

Q ss_pred             hhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCC----------------CCCCCCCCCcCCceEeecC
Q 025516           58 FAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYP----------------LKSLPSNHSAEKLMFLEVP  121 (251)
Q Consensus        58 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~----------------~~~~~~~~~l~~L~~L~l~  121 (251)
                      +.++++|++|++++|.+.+..+  +..+.+|+.++++.|.+.+..                +..++....+++|++|+++
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~  185 (466)
T 1o6v_A          108 LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS  185 (466)
T ss_dssp             GTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECC
T ss_pred             hcCCCCCCEEECCCCCCCCChH--HcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECc
Confidence            4555555555555555544322  455556666666666554321                0011111134556666666


Q ss_pred             CCcccc---ccCcCCccEEEcCCCcCCcccc--------------------CccccCCCccEEecCCCCCCCCCCccccC
Q 025516          122 NSDIEQ---LWNSVKLVILNLSGSKSLKSLP--------------------AGIFNLEFLTELDLSGCSKLKRLPEISSG  178 (251)
Q Consensus       122 ~n~i~~---l~~~~~L~~L~l~~n~~~~~~~--------------------~~~~~l~~L~~L~l~~n~~~~~~~~~~~~  178 (251)
                      +|.+..   +..+++|++|++++|.+.+..|                    ..+..+++|++|++++|.+.+..+-..++
T Consensus       186 ~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~  265 (466)
T 1o6v_A          186 SNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLT  265 (466)
T ss_dssp             SSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred             CCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccchhhhcCC
Confidence            665543   2334455555555554333222                    12333444444444444433332222245


Q ss_pred             CccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCC
Q 025516          179 NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRL  241 (251)
Q Consensus       179 ~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~  241 (251)
                      +|++|++++|.++.++. +..+++|+.|++++|++.+..|  ++.+++|+.|++++|++.+..
T Consensus       266 ~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~  325 (466)
T 1o6v_A          266 KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDIS  325 (466)
T ss_dssp             TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCG
T ss_pred             CCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCch
Confidence            55555555555555443 4555666666666665443322  556666666666666555433

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.78  E-value=3.7e-18  Score=140.14  Aligned_cols=178  Identities=19%  Similarity=0.187  Sum_probs=138.7

Q ss_pred             hhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCC
Q 025516           57 TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVK  133 (251)
Q Consensus        57 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~  133 (251)
                      .+..+++|+.|++++|.+....  .+..+.+++.+++     +++.+..++....+++|++|++++|++..   +..+++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l~--~~~~l~~L~~L~L-----~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~  108 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTTIE--GVQYLNNLIGLEL-----KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS  108 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCCCT--TGGGCTTCCEEEC-----CSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTT
T ss_pred             cHHHcCCcCEEEeeCCCccCch--hhhccCCCCEEEc-----cCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCC
Confidence            3457899999999999877532  4555555555554     45555556654478999999999999875   556789


Q ss_pred             ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516          134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR  213 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~  213 (251)
                      |++|++++|.+.+ ++. ++.+++|++|++++|.+.+..+-..+++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus       109 L~~L~l~~n~l~~-~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l  185 (308)
T 1h6u_A          109 IKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI  185 (308)
T ss_dssp             CCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             CCEEECCCCCCCC-chh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCcc
Confidence            9999999998554 444 88999999999999987665443338999999999999998887 88999999999999997


Q ss_pred             CccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          214 LKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       214 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      .+..+  +..+++|++|++++|.+.+ +|. ++.+
T Consensus       186 ~~~~~--l~~l~~L~~L~L~~N~l~~-~~~-l~~l  216 (308)
T 1h6u_A          186 SDISP--LASLPNLIEVHLKNNQISD-VSP-LANT  216 (308)
T ss_dssp             CCCGG--GGGCTTCCEEECTTSCCCB-CGG-GTTC
T ss_pred             CcChh--hcCCCCCCEEEccCCccCc-ccc-ccCC
Confidence            65433  8899999999999987764 442 4443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.78  E-value=1.4e-18  Score=153.35  Aligned_cols=187  Identities=18%  Similarity=0.236  Sum_probs=143.7

Q ss_pred             ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCce
Q 025516           37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLM  116 (251)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~  116 (251)
                      +++.+.+..+.+..+   |..+  +++|+.|++++|.++...    ..+.+     |+.+++++|.++.+|. +. .+|+
T Consensus        60 ~L~~L~Ls~n~L~~l---p~~l--~~~L~~L~Ls~N~l~~ip----~~l~~-----L~~L~Ls~N~l~~ip~-l~-~~L~  123 (571)
T 3cvr_A           60 QFSELQLNRLNLSSL---PDNL--PPQITVLEITQNALISLP----ELPAS-----LEYLDACDNRLSTLPE-LP-ASLK  123 (571)
T ss_dssp             TCSEEECCSSCCSCC---CSCC--CTTCSEEECCSSCCSCCC----CCCTT-----CCEEECCSSCCSCCCC-CC-TTCC
T ss_pred             CccEEEeCCCCCCcc---CHhH--cCCCCEEECcCCCCcccc----cccCC-----CCEEEccCCCCCCcch-hh-cCCC
Confidence            566777776665543   3333  378999999999988432    23444     4445555555556666 32 2999


Q ss_pred             EeecCCCcccccc-CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCc
Q 025516          117 FLEVPNSDIEQLW-NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPS  195 (251)
Q Consensus       117 ~L~l~~n~i~~l~-~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~  195 (251)
                      +|++++|+++.++ .+++|++|++++|.+.+ +|.   .+++|++|++++|.+.+ +|. +.++|+.|++++|.++.+|.
T Consensus       124 ~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~~~L~~L~Ls~N~L~~lp~  197 (571)
T 3cvr_A          124 HLDVDNNQLTMLPELPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LPESLEALDVSTNLLESLPA  197 (571)
T ss_dssp             EEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSSCCC
T ss_pred             EEECCCCcCCCCCCcCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hhCCCCEEECcCCCCCchhh
Confidence            9999999998776 46689999999998554 666   57899999999998766 666 45899999999999999998


Q ss_pred             ccccCccC-------CEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          196 SFELLLRL-------WLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       196 ~~~~l~~L-------~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                       +..  +|       +.|++++|.+. .+|..+..+++|++|++++|++.+.+|..++.+.
T Consensus       198 -~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~  254 (571)
T 3cvr_A          198 -VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT  254 (571)
T ss_dssp             -CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred             -HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence             654  77       99999999976 6888888899999999999999999999888764

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.77  E-value=5.6e-18  Score=149.33  Aligned_cols=185  Identities=16%  Similarity=0.118  Sum_probs=138.3

Q ss_pred             hhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc-------ccC
Q 025516           58 FAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-------LWN  130 (251)
Q Consensus        58 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-------l~~  130 (251)
                      +..+.+|+.|++++|.+.......+..+.+++.++++.|.+.+..+........+++|++|++++|++..       +..
T Consensus       306 ~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  385 (549)
T 2z81_A          306 YSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT  385 (549)
T ss_dssp             HHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG
T ss_pred             hhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc
Confidence            4456788888888888764332223456666666666666554110000111257899999999999864       556


Q ss_pred             cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccC
Q 025516          131 SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSD  210 (251)
Q Consensus       131 ~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~  210 (251)
                      +++|++|++++|.+ ..+|..++.+++|++|++++|.+. .++....++|++|++++|+++.++   ..+++|+.|++++
T Consensus       386 l~~L~~L~Ls~N~l-~~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~  460 (549)
T 2z81_A          386 LKNLTSLDISRNTF-HPMPDSCQWPEKMRFLNLSSTGIR-VVKTCIPQTLEVLDVSNNNLDSFS---LFLPRLQELYISR  460 (549)
T ss_dssp             CTTCCEEECTTCCC-CCCCSCCCCCTTCCEEECTTSCCS-CCCTTSCTTCSEEECCSSCCSCCC---CCCTTCCEEECCS
T ss_pred             CCCCCEEECCCCCC-ccCChhhcccccccEEECCCCCcc-cccchhcCCceEEECCCCChhhhc---ccCChhcEEECCC
Confidence            78999999999974 478888888999999999999854 455555679999999999998765   5789999999999


Q ss_pred             CcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          211 CKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       211 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      |++. .+|. .+.+++|++|++++|++.+..|..++.+.
T Consensus       461 N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~  497 (549)
T 2z81_A          461 NKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLT  497 (549)
T ss_dssp             SCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCT
T ss_pred             CccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCc
Confidence            9976 6776 56899999999999998887777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.77  E-value=1.9e-17  Score=147.58  Aligned_cols=88  Identities=28%  Similarity=0.333  Sum_probs=66.9

Q ss_pred             CCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 025516          156 EFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       156 ~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n  235 (251)
                      ++|++|++++|.+.+ +| ..+++|+.|++++|.++.+|.   .+++|+.|++++|++. .+|..++++++|+.|++++|
T Consensus       221 ~~L~~L~Ls~N~L~~-lp-~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N  294 (622)
T 3g06_A          221 SGLKELIVSGNRLTS-LP-VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGN  294 (622)
T ss_dssp             TTCCEEECCSSCCSC-CC-CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSC
T ss_pred             CCCCEEEccCCccCc-CC-CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCC
Confidence            567777777775543 44 335778888888888888776   5678888889888866 67888888999999999998


Q ss_pred             cCCCCCChhhhhcc
Q 025516          236 SNLQRLPDRLASYR  249 (251)
Q Consensus       236 ~~~~~~p~~l~~l~  249 (251)
                      ++.+..|..+..+.
T Consensus       295 ~l~~~~~~~l~~L~  308 (622)
T 3g06_A          295 PLSERTLQALREIT  308 (622)
T ss_dssp             CCCHHHHHHHHHHH
T ss_pred             CCCCcCHHHHHhcc
Confidence            88887777666543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.76  E-value=1.2e-18  Score=143.16  Aligned_cols=175  Identities=17%  Similarity=0.088  Sum_probs=136.7

Q ss_pred             cCCCccEEEeecccCCCCCcccc--ccCCcceecceeEEeeccCCCCCCC-C-CCCcCCceEeecCCCcccc-----ccC
Q 025516           60 KMRKLRFLKFYSSSFNGENRCKV--SHLQDLRFAEVKYLHWHGYPLKSLP-S-NHSAEKLMFLEVPNSDIEQ-----LWN  130 (251)
Q Consensus        60 ~l~~L~~L~l~~n~~~~~~~~~l--~~l~~l~~l~L~~~~l~~~~~~~~~-~-~~~l~~L~~L~l~~n~i~~-----l~~  130 (251)
                      .+++|+.|++++|.+.+..+..+  ..+.+++.++++.|.+.+... .++ . ...+++|++|++++|++..     +..
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~-~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  167 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRS-WLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRA  167 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTS-SHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhh-hhHHHHhhhccCCCEEEeeCCCcchhhHHHhcc
Confidence            45779999999999998888777  778888888888887765211 011 0 1257899999999999964     446


Q ss_pred             cCCccEEEcCCCcCCcc--cc--CccccCCCccEEecCCCCCCCCCCc----c--ccCCccEEEccccCCccC-Cccccc
Q 025516          131 SVKLVILNLSGSKSLKS--LP--AGIFNLEFLTELDLSGCSKLKRLPE----I--SSGNIGQLFLSGTAIEEL-PSSFEL  199 (251)
Q Consensus       131 ~~~L~~L~l~~n~~~~~--~~--~~~~~l~~L~~L~l~~n~~~~~~~~----~--~~~~L~~L~l~~n~i~~l-p~~~~~  199 (251)
                      +++|++|++++|.+.+.  .+  ..++.+++|++|++++|.+. .++.    .  .+++|++|++++|.++.+ |..+..
T Consensus       168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~  246 (310)
T 4glp_A          168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPR  246 (310)
T ss_dssp             CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSS
T ss_pred             CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHh
Confidence            78999999999986653  22  33467899999999999874 3332    1  268999999999999976 777766


Q ss_pred             C---ccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516          200 L---LRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       200 l---~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      +   ++|+.|++++|++. .+|..+.  ++|++|++++|.+.+
T Consensus       247 ~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~  286 (310)
T 4glp_A          247 CMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR  286 (310)
T ss_dssp             CCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS
T ss_pred             ccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC
Confidence            5   79999999999977 6787664  899999999988776

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.76  E-value=1.1e-17  Score=144.47  Aligned_cols=87  Identities=22%  Similarity=0.323  Sum_probs=38.9

Q ss_pred             CccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCc--cCcccccCC----------
Q 025516          157 FLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLK--SLPSSLCKL----------  224 (251)
Q Consensus       157 ~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~--~~p~~~~~l----------  224 (251)
                      +|++|++++|.+.+ +|.. +++|++|++++|+++.+|.   .+++|+.|++++|++.+  .+|..++.+          
T Consensus       318 ~L~~L~Ls~N~l~~-lp~~-~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~  392 (454)
T 1jl5_A          318 SLEELNVSNNKLIE-LPAL-PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVP  392 (454)
T ss_dssp             TCCEEECCSSCCSC-CCCC-CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------
T ss_pred             cCCEEECCCCcccc-cccc-CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccc
Confidence            45555555554433 3322 4566777777777666665   35677777777777766  566666666          


Q ss_pred             ---CCCCEEeccCCcCCC--CCChhhhhc
Q 025516          225 ---KSLELLSLRGCSNLQ--RLPDRLASY  248 (251)
Q Consensus       225 ---~~L~~L~l~~n~~~~--~~p~~l~~l  248 (251)
                         ++|++|++++|++.+  .+|.+++.+
T Consensus       393 ~~~~~L~~L~ls~N~l~~~~~iP~sl~~L  421 (454)
T 1jl5_A          393 ELPQNLKQLHVETNPLREFPDIPESVEDL  421 (454)
T ss_dssp             -----------------------------
T ss_pred             cccCcCCEEECCCCcCCccccchhhHhhe
Confidence               677777777777766  677666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=2.7e-17  Score=129.33  Aligned_cols=143  Identities=20%  Similarity=0.121  Sum_probs=114.2

Q ss_pred             ccCCCCCCCCCCCcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCC
Q 025516           99 HGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLP  173 (251)
Q Consensus        99 ~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  173 (251)
                      +++.+..+|... ..+|++|++++|.+..     +..+++|++|++++|.+....+..++++++|++|++++|.+.+..+
T Consensus        27 ~~~~l~~ip~~~-~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~  105 (229)
T 3e6j_A           27 RSKRHASVPAGI-PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPS  105 (229)
T ss_dssp             TTSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cCCCcCccCCCC-CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccCh
Confidence            444455666533 3778888888888764     4467789999999998644444556789999999999998776555


Q ss_pred             ccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          174 EIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       174 ~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      ..+  +++|++|++++|+++.+|..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++....+
T Consensus       106 ~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          106 AVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             TTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred             hHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence            443  789999999999999999999999999999999999876666778999999999999998876654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=5.9e-18  Score=131.06  Aligned_cols=131  Identities=18%  Similarity=0.125  Sum_probs=81.4

Q ss_pred             cCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEE
Q 025516          112 AEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLF  184 (251)
Q Consensus       112 l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~  184 (251)
                      +++|++|++++|++..     +..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+  +++|++|+
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  130 (208)
T 2o6s_A           51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLR  130 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEE
Confidence            4445555555554432     2345567777777666444444445667777777777776554444322  56777777


Q ss_pred             ccccCCccCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          185 LSGTAIEELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       185 l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      +++|.++.+|.. +..+++|+.|++++|++.       +.+++|++|+++.|.+.+.+|++++.+.
T Consensus       131 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          131 LYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             CCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCceeeccCcccc
Confidence            777777766653 566777777777777543       3445677777777777777777766654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=1.6e-17  Score=129.83  Aligned_cols=142  Identities=19%  Similarity=0.128  Sum_probs=101.5

Q ss_pred             cCCCCCCCCCCCcCCceEeecCCCccccc------cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCC
Q 025516          100 GYPLKSLPSNHSAEKLMFLEVPNSDIEQL------WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLP  173 (251)
Q Consensus       100 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~l------~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  173 (251)
                      ++.++.+|..+ ...+++|++++|+++.+      ..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+
T Consensus        20 ~n~l~~iP~~~-~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~   98 (220)
T 2v70_A           20 NQKLNKIPEHI-PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQH   98 (220)
T ss_dssp             SSCCSSCCSCC-CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCG
T ss_pred             CCCcccCccCC-CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCH
Confidence            33334444322 23446667777766543      456678888888887665555677788888888888887766555


Q ss_pred             ccc--cCCccEEEccccCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          174 EIS--SGNIGQLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       174 ~~~--~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      ..+  +++|++|++++|.++.+ |..+..+++|+.|++++|.+.+..|..+..+++|++|++++|++....+
T Consensus        99 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  170 (220)
T 2v70_A           99 KMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY  170 (220)
T ss_dssp             GGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred             hHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence            433  77888888888888866 4567788888888888888877778888888888888888887765544

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.75  E-value=4.2e-17  Score=127.47  Aligned_cols=142  Identities=21%  Similarity=0.228  Sum_probs=111.0

Q ss_pred             eeccCCCCCCCCCCCcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCC
Q 025516           97 HWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKR  171 (251)
Q Consensus        97 ~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  171 (251)
                      +.+++.+..+|..+. .+++.|++++|++..     +..+++|++|++++|.+.+..|..+.++++|++|++++|.+...
T Consensus        17 ~c~~~~l~~iP~~l~-~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l   95 (220)
T 2v9t_B           17 DCRGKGLTEIPTNLP-ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL   95 (220)
T ss_dssp             ECTTSCCSSCCSSCC-TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC
T ss_pred             EcCCCCcCcCCCccC-cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc
Confidence            334445556665432 678888888888764     44567899999999887777788888999999999999987654


Q ss_pred             CCccc--cCCccEEEccccCCccCC-cccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516          172 LPEIS--SGNIGQLFLSGTAIEELP-SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       172 ~~~~~--~~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      .+..+  +++|++|++++|.++.++ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|++..
T Consensus        96 ~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  166 (220)
T 2v9t_B           96 PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFIC  166 (220)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             CHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCC
Confidence            44433  789999999999998764 567889999999999999877777778899999999999987654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.74  E-value=1.5e-17  Score=135.49  Aligned_cols=168  Identities=20%  Similarity=0.200  Sum_probs=101.4

Q ss_pred             hhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCCc
Q 025516           58 FAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVKL  134 (251)
Q Consensus        58 ~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~L  134 (251)
                      +..+++|+.|++++|.+...  ..+..+.+++.+++     +++.+..++....+++|++|++++|++..   +..+++|
T Consensus        42 ~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L-----~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L  114 (291)
T 1h6t_A           42 QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFL-----NGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKL  114 (291)
T ss_dssp             HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEEC-----CSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTC
T ss_pred             hhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEc-----cCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCC
Confidence            34566677777776665543  12333444333333     33333344443356777777777776653   4455667


Q ss_pred             cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516          135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR  213 (251)
Q Consensus       135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~  213 (251)
                      ++|++++|.+.+ + ..++.+++|++|++++|.+.+. +... +++|+.|++++|.++.++. +..+++|+.|++++|.+
T Consensus       115 ~~L~L~~n~i~~-~-~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i  190 (291)
T 1h6t_A          115 KSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHI  190 (291)
T ss_dssp             CEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             CEEECCCCcCCC-C-hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcC
Confidence            777777776443 3 3466677777777777765544 3222 6777777777777776655 66777777777777765


Q ss_pred             CccCcccccCCCCCCEEeccCCcCC
Q 025516          214 LKSLPSSLCKLKSLELLSLRGCSNL  238 (251)
Q Consensus       214 ~~~~p~~~~~l~~L~~L~l~~n~~~  238 (251)
                      .. +| .+..+++|+.|++++|++.
T Consensus       191 ~~-l~-~l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          191 SD-LR-ALAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             CB-CG-GGTTCTTCSEEEEEEEEEE
T ss_pred             CC-Ch-hhccCCCCCEEECcCCccc
Confidence            43 33 3677777777777776544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=9.1e-18  Score=128.97  Aligned_cols=148  Identities=15%  Similarity=0.104  Sum_probs=93.4

Q ss_pred             hcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccc---cccCcCCcc
Q 025516           59 AKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIE---QLWNSVKLV  135 (251)
Q Consensus        59 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~---~l~~~~~L~  135 (251)
                      ..+++|+.|++++|.+....  .+..+.+                           |++|++++|.+.   .+..+++|+
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~---------------------------L~~L~l~~n~~~~~~~l~~l~~L~   91 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLT--GIEYAHN---------------------------IKDLTINNIHATNYNPISGLSNLE   91 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCT--TGGGCTT---------------------------CSEEEEESCCCSCCGGGTTCTTCC
T ss_pred             hhcCCccEEeccCCCccChH--HHhcCCC---------------------------CCEEEccCCCCCcchhhhcCCCCC
Confidence            56777888888877765321  2333333                           333333333332   345556677


Q ss_pred             EEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccC-CccCCcccccCccCCEEeccCCc
Q 025516          136 ILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTA-IEELPSSFELLLRLWLLDLSDCK  212 (251)
Q Consensus       136 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~-i~~lp~~~~~l~~L~~L~l~~n~  212 (251)
                      +|++++|.+.+..+..++++++|++|++++|.+....+...  +++|++|++++|. ++.+| .+..+++|+.|++++|.
T Consensus        92 ~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A           92 RLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             EEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBC
T ss_pred             EEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCC
Confidence            77777776555566667777777777777776655444322  6677777777776 66666 56777888888888887


Q ss_pred             CCccCcccccCCCCCCEEeccCCcCC
Q 025516          213 RLKSLPSSLCKLKSLELLSLRGCSNL  238 (251)
Q Consensus       213 ~~~~~p~~~~~l~~L~~L~l~~n~~~  238 (251)
                      +.. ++ .+..+++|++|++++|++.
T Consensus       171 i~~-~~-~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          171 VHD-YR-GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CCC-CT-TGGGCSSCCEEEECBC---
T ss_pred             CcC-hH-HhccCCCCCEEEeeCcccC
Confidence            654 33 5777888888888876543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.4e-17  Score=128.00  Aligned_cols=146  Identities=16%  Similarity=0.132  Sum_probs=105.5

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL  115 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L  115 (251)
                      .+++.+.+..+.+..+   + .+..+++|+.|++++|.+..  ...+..+.                           +|
T Consensus        44 ~~L~~L~l~~n~i~~l---~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~---------------------------~L   90 (197)
T 4ezg_A           44 NSLTYITLANINVTDL---T-GIEYAHNIKDLTINNIHATN--YNPISGLS---------------------------NL   90 (197)
T ss_dssp             HTCCEEEEESSCCSCC---T-TGGGCTTCSEEEEESCCCSC--CGGGTTCT---------------------------TC
T ss_pred             CCccEEeccCCCccCh---H-HHhcCCCCCEEEccCCCCCc--chhhhcCC---------------------------CC
Confidence            4567777777766533   2 68899999999999996543  12333333                           44


Q ss_pred             eEeecCCCccc-----cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccC
Q 025516          116 MFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTA  189 (251)
Q Consensus       116 ~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~  189 (251)
                      ++|++++|++.     .+..+++|++|++++|.+.+..|..++.+++|++|++++|...+.++... +++|++|++++|.
T Consensus        91 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n~  170 (197)
T 4ezg_A           91 ERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDG  170 (197)
T ss_dssp             CEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTBC
T ss_pred             CEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCCC
Confidence            44444444432     35567788888998888777677778889999999999998566666544 8899999999999


Q ss_pred             CccCCcccccCccCCEEeccCCcCCc
Q 025516          190 IEELPSSFELLLRLWLLDLSDCKRLK  215 (251)
Q Consensus       190 i~~lp~~~~~l~~L~~L~l~~n~~~~  215 (251)
                      ++.++ .+..+++|+.|++++|++.+
T Consensus       171 i~~~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          171 VHDYR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             CCCCT-TGGGCSSCCEEEECBC----
T ss_pred             CcChH-HhccCCCCCEEEeeCcccCC
Confidence            99887 68899999999999998653

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.73  E-value=8.5e-17  Score=141.95  Aligned_cols=164  Identities=18%  Similarity=0.202  Sum_probs=130.3

Q ss_pred             CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccccCcC-CccEEEcC
Q 025516           62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-KLVILNLS  140 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~~~-~L~~L~l~  140 (251)
                      .+++.|++++|.+.+ .+..+  +.     .|+.+++++|.++.+|  ..+++|++|++++|+++.++.+. +|++|+++
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l--~~-----~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls  128 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNL--PP-----QITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPELPASLKHLDVD  128 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCC--CT-----TCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             CCccEEEeCCCCCCc-cCHhH--cC-----CCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcchhhcCCCEEECC
Confidence            399999999999887 33333  23     3555566666666777  34799999999999998877644 89999999


Q ss_pred             CCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCccc
Q 025516          141 GSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSS  220 (251)
Q Consensus       141 ~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~  220 (251)
                      +|.+.+ +|.   .+++|++|++++|.+.+ +|. .+++|+.|++++|.++.+|. +.  ++|+.|++++|.+. .+|. 
T Consensus       129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~-~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~-~lp~-  197 (571)
T 3cvr_A          129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE-LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE-SLPA-  197 (571)
T ss_dssp             SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS-SCCC-
T ss_pred             CCcCCC-CCC---cCccccEEeCCCCccCc-CCC-cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC-chhh-
Confidence            998655 776   68899999999998765 666 67899999999999999998 65  89999999999976 6676 


Q ss_pred             ccCCCCC-------CEEeccCCcCCCCCChhhhhcc
Q 025516          221 LCKLKSL-------ELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       221 ~~~l~~L-------~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      +..  +|       +.|++++|.+. .+|.++..++
T Consensus       198 ~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~  230 (571)
T 3cvr_A          198 VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLD  230 (571)
T ss_dssp             CC----------CCEEEECCSSCCC-CCCGGGGGSC
T ss_pred             HHH--hhhcccccceEEecCCCcce-ecCHHHhcCC
Confidence            554  77       99999997665 6999887654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=2.4e-16  Score=121.89  Aligned_cols=142  Identities=20%  Similarity=0.178  Sum_probs=114.5

Q ss_pred             cCCCCCCCCCCCcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCc
Q 025516          100 GYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPE  174 (251)
Q Consensus       100 ~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  174 (251)
                      ++.+..+|... ..+|++|++++|+++.     +..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+.
T Consensus        16 ~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~   94 (208)
T 2o6s_A           16 SQGRTSVPTGI-PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNG   94 (208)
T ss_dssp             SSCCSSCCSCC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred             CCCccCCCCCC-CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHh
Confidence            33344555332 4578888888888764     44678999999999986655555678899999999999987765554


Q ss_pred             cc--cCCccEEEccccCCccCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          175 IS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       175 ~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      .+  +++|++|++++|+++.+|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|+..+..|
T Consensus        95 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  165 (208)
T 2o6s_A           95 VFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP  165 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCCCTT
T ss_pred             HhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeecCCC
Confidence            33  88999999999999988764 6899999999999999887666678999999999999999888776

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.72  E-value=4.9e-16  Score=138.58  Aligned_cols=64  Identities=30%  Similarity=0.319  Sum_probs=48.5

Q ss_pred             CCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          178 GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       178 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      ++|+.|++++|.++.+|   ..+++|+.|++++|.+. .+|.   .+++|++|++++|.+. .+|..++.++
T Consensus       221 ~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~  284 (622)
T 3g06_A          221 SGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLS  284 (622)
T ss_dssp             TTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSC
T ss_pred             CCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhcc
Confidence            56777777777777777   34577888888888765 4555   6788999999998666 7898887764

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.72  E-value=1.5e-16  Score=142.10  Aligned_cols=183  Identities=19%  Similarity=0.197  Sum_probs=132.4

Q ss_pred             chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc-----cc
Q 025516           55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LW  129 (251)
Q Consensus        55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~  129 (251)
                      +..+..+.+|+.++++.+..... +..+..+..++.+++..++.....  .......+.+++.++++.|.+..     +.
T Consensus       390 ~~~~~~~~~L~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~--~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~  466 (635)
T 4g8a_A          390 SQSDFGTISLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISHTHTRVAFNGIFN  466 (635)
T ss_dssp             CHHHHSCSCCCEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTT--SSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred             ccchhhhhhhhhhhccccccccc-cccccccccccchhhhhccccccc--cccccccccccccccccccccccccccccc
Confidence            33444445555555544433221 122333444444444433333211  11112267889999999998864     34


Q ss_pred             CcCCccEEEcCCCcCCc-cccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCE
Q 025516          130 NSVKLVILNLSGSKSLK-SLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWL  205 (251)
Q Consensus       130 ~~~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~  205 (251)
                      .++.+++|++++|.... ..|..++.+++|++|++++|++.+..|..+  +++|++|++++|+++.++. .+.++++|+.
T Consensus       467 ~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~  546 (635)
T 4g8a_A          467 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQV  546 (635)
T ss_dssp             TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCE
T ss_pred             cchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCE
Confidence            56789999999997554 467888899999999999999887777654  8999999999999998865 5789999999


Q ss_pred             EeccCCcCCccCcccccCC-CCCCEEeccCCcCCCC
Q 025516          206 LDLSDCKRLKSLPSSLCKL-KSLELLSLRGCSNLQR  240 (251)
Q Consensus       206 L~l~~n~~~~~~p~~~~~l-~~L~~L~l~~n~~~~~  240 (251)
                      |++++|++.+..|..+..+ ++|++|++++|+....
T Consensus       547 L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~  582 (635)
T 4g8a_A          547 LDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  582 (635)
T ss_dssp             EECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred             EECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence            9999999999999999988 6899999999988754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.72  E-value=1.1e-19  Score=153.73  Aligned_cols=210  Identities=15%  Similarity=0.054  Sum_probs=139.2

Q ss_pred             cCCCceEEEEeecCCccccc-CCch-------hhhcCCCccEEEeecccCCCC----CccccccCCcceecceeEEeecc
Q 025516           33 KGTEKIEGICLDLSKVKEIP-LNPN-------TFAKMRKLRFLKFYSSSFNGE----NRCKVSHLQDLRFAEVKYLHWHG  100 (251)
Q Consensus        33 ~~~~~~~~~~l~~~~~~~~~-~~~~-------~~~~l~~L~~L~l~~n~~~~~----~~~~l~~l~~l~~l~L~~~~l~~  100 (251)
                      ....+++.+.+..+....+. ..|.       .+..+++|++|++++|.+...    .+..+..+..|+.++|+.|.+..
T Consensus        57 ~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~  136 (386)
T 2ca6_A           57 ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGP  136 (386)
T ss_dssp             TTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHH
T ss_pred             HhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCH
Confidence            34566777666554332111 1122       346788888888888887763    33345556666666666665543


Q ss_pred             CCCCCCCCCC-Cc---------CCceEeecCCCccc---------cccCcCCccEEEcCCCcCCc-----cccCccccCC
Q 025516          101 YPLKSLPSNH-SA---------EKLMFLEVPNSDIE---------QLWNSVKLVILNLSGSKSLK-----SLPAGIFNLE  156 (251)
Q Consensus       101 ~~~~~~~~~~-~l---------~~L~~L~l~~n~i~---------~l~~~~~L~~L~l~~n~~~~-----~~~~~~~~l~  156 (251)
                      .....++..+ .+         ++|++|++++|++.         .+..+++|++|++++|.+..     ..|..+..++
T Consensus       137 ~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~  216 (386)
T 2ca6_A          137 QAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQ  216 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCT
T ss_pred             HHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCC
Confidence            2222222211 22         78888888888875         23356788889988887552     2444677888


Q ss_pred             CccEEecCCCCCC----CCCCccc--cCCccEEEccccCCcc-----CCccc--ccCccCCEEeccCCcCCc----cCcc
Q 025516          157 FLTELDLSGCSKL----KRLPEIS--SGNIGQLFLSGTAIEE-----LPSSF--ELLLRLWLLDLSDCKRLK----SLPS  219 (251)
Q Consensus       157 ~L~~L~l~~n~~~----~~~~~~~--~~~L~~L~l~~n~i~~-----lp~~~--~~l~~L~~L~l~~n~~~~----~~p~  219 (251)
                      +|++|++++|.+.    ..+|...  +++|++|++++|.++.     +|..+  +.+++|+.|++++|.+..    .+|.
T Consensus       217 ~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~  296 (386)
T 2ca6_A          217 ELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKT  296 (386)
T ss_dssp             TCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHH
T ss_pred             CccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHH
Confidence            8999999988764    3344332  6789999999998873     45555  348889999999988776    4777


Q ss_pred             cc-cCCCCCCEEeccCCcCCCCCC
Q 025516          220 SL-CKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       220 ~~-~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      .+ .++++|++|++++|.+.+..|
T Consensus       297 ~l~~~l~~L~~L~l~~N~l~~~~~  320 (386)
T 2ca6_A          297 VIDEKMPDLLFLELNGNRFSEEDD  320 (386)
T ss_dssp             HHHHHCTTCCEEECTTSBSCTTSH
T ss_pred             HHHhcCCCceEEEccCCcCCcchh
Confidence            66 668999999999988876664

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=4.7e-17  Score=144.80  Aligned_cols=150  Identities=20%  Similarity=0.205  Sum_probs=92.7

Q ss_pred             hhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCC
Q 025516           57 TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVK  133 (251)
Q Consensus        57 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~  133 (251)
                      .|..+++|+.|++++|.+.+..+  +..+..|+.++|+.|.     +..++....+++|+.|++++|.+..   +..+++
T Consensus        60 ~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~-----l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~  132 (605)
T 1m9s_A           60 GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK-----IKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQ  132 (605)
T ss_dssp             TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSC-----CCCCTTSTTCTTCCEEECTTSCCCCCGGGGGCTT
T ss_pred             HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCC-----CCCChhhccCCCCCEEEecCCCCCCCccccCCCc
Confidence            46677777777777777665433  4444444444444333     3344443356777777777776654   345566


Q ss_pred             ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516          134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR  213 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~  213 (251)
                      |+.|+|++|.+.+.  ..++.+++|+.|++++|.+.+..|-..+++|+.|+|++|.++.+| .+..+++|+.|+|++|++
T Consensus       133 L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l  209 (605)
T 1m9s_A          133 LESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQEC  209 (605)
T ss_dssp             CSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEE
T ss_pred             cCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcC
Confidence            77777777764433  446667777777777776655545223667777777777777664 466677777777777765


Q ss_pred             Ccc
Q 025516          214 LKS  216 (251)
Q Consensus       214 ~~~  216 (251)
                      ...
T Consensus       210 ~~~  212 (605)
T 1m9s_A          210 LNK  212 (605)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.72  E-value=3.1e-17  Score=133.60  Aligned_cols=167  Identities=20%  Similarity=0.214  Sum_probs=131.5

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL  115 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L  115 (251)
                      .+++.+.+..+.+..+    ..+..+++|+.|++++|.+.+..+  +..+.+|+.++++.|.+     ..++....+++|
T Consensus        46 ~~L~~L~l~~~~i~~~----~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l-----~~~~~l~~l~~L  114 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV----QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV-----KDLSSLKDLKKL  114 (291)
T ss_dssp             HTCCEEECTTSCCCCC----TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC-----CCGGGGTTCTTC
T ss_pred             CcccEEEccCCCcccC----hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC-----CCChhhccCCCC
Confidence            4456666666655444    258889999999999999987544  66666666665555544     455555578999


Q ss_pred             eEeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCcc
Q 025516          116 MFLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEE  192 (251)
Q Consensus       116 ~~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~  192 (251)
                      ++|++++|++..   +..+++|++|++++|.+.+.  ..++.+++|++|++++|.+.+..+-..+++|+.|++++|.++.
T Consensus       115 ~~L~L~~n~i~~~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~  192 (291)
T 1h6t_A          115 KSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD  192 (291)
T ss_dssp             CEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB
T ss_pred             CEEECCCCcCCCChhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC
Confidence            999999999875   55678999999999985553  5688999999999999987766553338999999999999999


Q ss_pred             CCcccccCccCCEEeccCCcCCcc
Q 025516          193 LPSSFELLLRLWLLDLSDCKRLKS  216 (251)
Q Consensus       193 lp~~~~~l~~L~~L~l~~n~~~~~  216 (251)
                      +|. +..+++|+.|++++|++...
T Consensus       193 l~~-l~~l~~L~~L~l~~n~i~~~  215 (291)
T 1h6t_A          193 LRA-LAGLKNLDVLELFSQECLNK  215 (291)
T ss_dssp             CGG-GTTCTTCSEEEEEEEEEECC
T ss_pred             Chh-hccCCCCCEEECcCCcccCC
Confidence            875 88999999999999987653

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.71  E-value=8e-19  Score=147.28  Aligned_cols=43  Identities=19%  Similarity=0.286  Sum_probs=21.3

Q ss_pred             eEEEEeecCCcccccCCc----hhhhcCC-CccEEEeecccCCCCCcccc
Q 025516           38 IEGICLDLSKVKEIPLNP----NTFAKMR-KLRFLKFYSSSFNGENRCKV   82 (251)
Q Consensus        38 ~~~~~l~~~~~~~~~~~~----~~~~~l~-~L~~L~l~~n~~~~~~~~~l   82 (251)
                      ++.+.+..+.+....  +    ..|..++ +|+.|++++|.+.+..+..+
T Consensus        24 L~~L~Ls~n~l~~~~--~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l   71 (362)
T 3goz_A           24 VTSLDLSLNNLYSIS--TVELIQAFANTPASVTSLNLSGNSLGFKNSDEL   71 (362)
T ss_dssp             CCEEECTTSCGGGSC--HHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH
T ss_pred             ceEEEccCCCCChHH--HHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH
Confidence            555555444443322  2    4555555 56666666665554443333

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.71  E-value=3.9e-19  Score=150.33  Aligned_cols=211  Identities=13%  Similarity=0.066  Sum_probs=150.1

Q ss_pred             CCceEEEEeecCCcccccC--CchhhhcCCCccEEEeecccCC---CCCcccc-------ccCCcceecceeEEeeccCC
Q 025516           35 TEKIEGICLDLSKVKEIPL--NPNTFAKMRKLRFLKFYSSSFN---GENRCKV-------SHLQDLRFAEVKYLHWHGYP  102 (251)
Q Consensus        35 ~~~~~~~~l~~~~~~~~~~--~~~~~~~l~~L~~L~l~~n~~~---~~~~~~l-------~~l~~l~~l~L~~~~l~~~~  102 (251)
                      ...++.+.+..+.+.....  .+..+..+++|+.|++++|.+.   +..+..+       ..+.+|+.++|+.|.+.+..
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~  110 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  110 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHH
Confidence            4567777777766543321  1234668999999999987543   2223233       45566666666666555432


Q ss_pred             CCCCCCCC-CcCCceEeecCCCcccc-----ccC----c---------CCccEEEcCCCcCC-cccc---CccccCCCcc
Q 025516          103 LKSLPSNH-SAEKLMFLEVPNSDIEQ-----LWN----S---------VKLVILNLSGSKSL-KSLP---AGIFNLEFLT  159 (251)
Q Consensus       103 ~~~~~~~~-~l~~L~~L~l~~n~i~~-----l~~----~---------~~L~~L~l~~n~~~-~~~~---~~~~~l~~L~  159 (251)
                      +..++..+ .+++|++|++++|.+..     ++.    +         ++|++|++++|.+. ...+   ..+..+++|+
T Consensus       111 ~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  190 (386)
T 2ca6_A          111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  190 (386)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcC
Confidence            22344444 57899999999999852     333    2         89999999999866 3444   4566789999


Q ss_pred             EEecCCCCCCC-----CCC-cc-ccCCccEEEccccCC-----ccCCcccccCccCCEEeccCCcCCcc----Ccccc--
Q 025516          160 ELDLSGCSKLK-----RLP-EI-SSGNIGQLFLSGTAI-----EELPSSFELLLRLWLLDLSDCKRLKS----LPSSL--  221 (251)
Q Consensus       160 ~L~l~~n~~~~-----~~~-~~-~~~~L~~L~l~~n~i-----~~lp~~~~~l~~L~~L~l~~n~~~~~----~p~~~--  221 (251)
                      +|++++|.+..     ..+ .. .+++|+.|++++|.+     ..+|..+..+++|+.|++++|.+...    +|..+  
T Consensus       191 ~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~  270 (386)
T 2ca6_A          191 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  270 (386)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             EEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhh
Confidence            99999997652     223 22 278999999999999     45788889999999999999998765    56666  


Q ss_pred             cCCCCCCEEeccCCcCCC----CCChhh
Q 025516          222 CKLKSLELLSLRGCSNLQ----RLPDRL  245 (251)
Q Consensus       222 ~~l~~L~~L~l~~n~~~~----~~p~~l  245 (251)
                      +.+++|++|++++|.+.+    .+|..+
T Consensus       271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l  298 (386)
T 2ca6_A          271 LENIGLQTLRLQYNEIELDAVRTLKTVI  298 (386)
T ss_dssp             CSSCCCCEEECCSSCCBHHHHHHHHHHH
T ss_pred             ccCCCeEEEECcCCcCCHHHHHHHHHHH
Confidence            449999999999998776    477766

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.70  E-value=1e-16  Score=142.66  Aligned_cols=171  Identities=21%  Similarity=0.233  Sum_probs=136.4

Q ss_pred             hhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCC
Q 025516           57 TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVK  133 (251)
Q Consensus        57 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~  133 (251)
                      .+..+.+|+.|++++|.+....  .+..+.+|+     .++++++.+..++....+++|+.|++++|.+..   +..+++
T Consensus        38 ~~~~L~~L~~L~l~~n~i~~l~--~l~~l~~L~-----~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~  110 (605)
T 1m9s_A           38 TQNELNSIDQIIANNSDIKSVQ--GIQYLPNVT-----KLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKK  110 (605)
T ss_dssp             CHHHHTTCCCCBCTTCCCCCCT--TGGGCTTCC-----EEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCTTSTTCTT
T ss_pred             chhcCCCCCEEECcCCCCCCCh--HHccCCCCC-----EEEeeCCCCCCChhhccCCCCCEEECcCCCCCCChhhccCCC
Confidence            3567899999999999877532  355555544     455555555556654478999999999999875   556778


Q ss_pred             ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEeccCCc
Q 025516          134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCK  212 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~  212 (251)
                      |+.|+|++|.+.+ + ..++.+++|+.|++++|.+... +... +++|+.|+|++|.++.+++ +..+++|+.|+|++|.
T Consensus       111 L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~  186 (605)
T 1m9s_A          111 LKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNH  186 (605)
T ss_dssp             CCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             CCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCC
Confidence            9999999998554 4 4588999999999999987665 4333 8999999999999998876 8899999999999999


Q ss_pred             CCccCcccccCCCCCCEEeccCCcCCCC
Q 025516          213 RLKSLPSSLCKLKSLELLSLRGCSNLQR  240 (251)
Q Consensus       213 ~~~~~p~~~~~l~~L~~L~l~~n~~~~~  240 (251)
                      +.+ + ..+..+++|+.|++++|++.+.
T Consensus       187 i~~-l-~~l~~l~~L~~L~L~~N~l~~~  212 (605)
T 1m9s_A          187 ISD-L-RALAGLKNLDVLELFSQECLNK  212 (605)
T ss_dssp             CCB-C-GGGTTCTTCSEEECCSEEEECC
T ss_pred             CCC-C-hHHccCCCCCEEEccCCcCcCC
Confidence            765 3 4589999999999999877653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.70  E-value=5.3e-18  Score=140.52  Aligned_cols=178  Identities=22%  Similarity=0.204  Sum_probs=103.4

Q ss_pred             chhhhcC--CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccc-----
Q 025516           55 PNTFAKM--RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIE-----  126 (251)
Q Consensus        55 ~~~~~~l--~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~-----  126 (251)
                      +..+..+  ++++.+++++|.+.+..+. +..+.+++.++++.+.+.+.   .++..+ .+++|++|++++|.+.     
T Consensus        61 ~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~---~~~~~~~~~~~L~~L~L~~~~l~~~~~~  136 (336)
T 2ast_B           61 PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS---TLHGILSQCSKLQNLSLEGLRLSDPIVN  136 (336)
T ss_dssp             HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH---HHHHHHTTBCCCSEEECTTCBCCHHHHH
T ss_pred             HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH---HHHHHHhhCCCCCEEeCcCcccCHHHHH
Confidence            4556666  7777777777776665443 33455555555555554331   022222 4667777777777664     


Q ss_pred             cccCcCCccEEEcCCC-cCCc-cccCccccCCCccEEecCCC-CCCCC-CCccc--cC-CccEEEccccC--Cc--cCCc
Q 025516          127 QLWNSVKLVILNLSGS-KSLK-SLPAGIFNLEFLTELDLSGC-SKLKR-LPEIS--SG-NIGQLFLSGTA--IE--ELPS  195 (251)
Q Consensus       127 ~l~~~~~L~~L~l~~n-~~~~-~~~~~~~~l~~L~~L~l~~n-~~~~~-~~~~~--~~-~L~~L~l~~n~--i~--~lp~  195 (251)
                      .+..+++|++|++++| .+.+ .++..++++++|++|++++| .+... ++...  ++ +|++|++++|.  ++  .+|.
T Consensus       137 ~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~  216 (336)
T 2ast_B          137 TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLST  216 (336)
T ss_dssp             HHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHH
T ss_pred             HHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHH
Confidence            3455667777777776 3332 24554556677777777777 43321 22222  55 67777777663  32  4555


Q ss_pred             ccccCccCCEEeccCCc-CCccCcccccCCCCCCEEeccCCc
Q 025516          196 SFELLLRLWLLDLSDCK-RLKSLPSSLCKLKSLELLSLRGCS  236 (251)
Q Consensus       196 ~~~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~  236 (251)
                      .+..+++|+.|++++|. +....+..++.+++|++|++++|.
T Consensus       217 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          217 LVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             HHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             HHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence            55666667777776666 444555566666666666666664

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.69  E-value=3.4e-16  Score=130.66  Aligned_cols=198  Identities=22%  Similarity=0.261  Sum_probs=130.1

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCC-CccccccCCcce-ecceeEEeeccCCCCCCCC-CC-C
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGE-NRCKVSHLQDLR-FAEVKYLHWHGYPLKSLPS-NH-S  111 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~l~-~l~L~~~~l~~~~~~~~~~-~~-~  111 (251)
                      ..++.+.+..++++.+  .+.+|.++++|++|++++|.+.+. .+.+|..+..+. .+.+..|.+.     .++. .+ .
T Consensus        30 ~~l~~L~Ls~N~i~~i--~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-----~l~~~~f~~  102 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVI--QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-----YINPEAFQN  102 (350)
T ss_dssp             TTCSEEEEESCCCSEE--CTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-----EECTTSBCC
T ss_pred             CCCCEEEccCCcCCCc--CHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-----ccCchhhhh
Confidence            4577777877777654  367899999999999999997653 344566666654 3344444443     4433 23 6


Q ss_pred             cCCceEeecCCCccccccC-----cCCccEEEcCCCcCCccccC-ccccCC-CccEEecCCCCCCCCCCccc-cCCccEE
Q 025516          112 AEKLMFLEVPNSDIEQLWN-----SVKLVILNLSGSKSLKSLPA-GIFNLE-FLTELDLSGCSKLKRLPEIS-SGNIGQL  183 (251)
Q Consensus       112 l~~L~~L~l~~n~i~~l~~-----~~~L~~L~l~~n~~~~~~~~-~~~~l~-~L~~L~l~~n~~~~~~~~~~-~~~L~~L  183 (251)
                      +++|++|++++|++..++.     ..++..|++.++.....++. .+..+. .++.|++++|.+....+..+ ..+|+++
T Consensus       103 l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l  182 (350)
T 4ay9_X          103 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDEL  182 (350)
T ss_dssp             CTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEE
T ss_pred             ccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHH
Confidence            8889999999988875543     33567777766544555443 444443 57788888887654333333 4567888


Q ss_pred             Ecc-ccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCCh
Q 025516          184 FLS-GTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPD  243 (251)
Q Consensus       184 ~l~-~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~  243 (251)
                      ++. +|.++.+|. .+.++++|+.|++++|++. .+|.  ..+.+|+.|.+.+++.++.+|.
T Consensus       183 ~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~--~~~~~L~~L~~l~~~~l~~lP~  241 (350)
T 4ay9_X          183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPS--YGLENLKKLRARSTYNLKKLPT  241 (350)
T ss_dssp             ECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCS--SSCTTCCEEECTTCTTCCCCCC
T ss_pred             hhccCCcccCCCHHHhccCcccchhhcCCCCcC-ccCh--hhhccchHhhhccCCCcCcCCC
Confidence            876 466777776 4577888888888888754 3443  2355666666666677777773

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=5.5e-16  Score=129.96  Aligned_cols=167  Identities=20%  Similarity=0.115  Sum_probs=117.6

Q ss_pred             cEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C--CcCCceEeecCCCcccc-----ccCcCCccE
Q 025516           65 RFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H--SAEKLMFLEVPNSDIEQ-----LWNSVKLVI  136 (251)
Q Consensus        65 ~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~--~l~~L~~L~l~~n~i~~-----l~~~~~L~~  136 (251)
                      +.++++++.+.... ..+  +..++.     ++++++.+..++.. +  .+.+|++|++++|+|..     +..+++|++
T Consensus        21 ~~l~c~~~~l~~iP-~~~--~~~l~~-----L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~   92 (361)
T 2xot_A           21 NILSCSKQQLPNVP-QSL--PSYTAL-----LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRY   92 (361)
T ss_dssp             TEEECCSSCCSSCC-SSC--CTTCSE-----EECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             CEEEeCCCCcCccC-ccC--CCCCCE-----EECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCE
Confidence            57888888776532 222  223334     44444444445443 2  67888999999988864     445678999


Q ss_pred             EEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCccc----ccCccCCEEeccC
Q 025516          137 LNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSF----ELLLRLWLLDLSD  210 (251)
Q Consensus       137 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~----~~l~~L~~L~l~~  210 (251)
                      |++++|.+....+..+.++++|++|++++|.+....+..+  +++|+.|++++|.++.+|..+    ..+++|+.|+|++
T Consensus        93 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A           93 LDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             EECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCS
T ss_pred             EECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCC
Confidence            9999888655555667788889999999888766555444  788899999999888888754    5688889999998


Q ss_pred             CcCCccCcccccCCCC--CCEEeccCCcCCC
Q 025516          211 CKRLKSLPSSLCKLKS--LELLSLRGCSNLQ  239 (251)
Q Consensus       211 n~~~~~~p~~~~~l~~--L~~L~l~~n~~~~  239 (251)
                      |++....+..+..++.  ++.|++++|++..
T Consensus       173 N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          173 NKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             SCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            8876555567777776  4788888887654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.68  E-value=4.1e-18  Score=141.22  Aligned_cols=175  Identities=19%  Similarity=0.207  Sum_probs=115.6

Q ss_pred             hhcCCCccEEEeecccCCCC-CccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCC-cccc------cc
Q 025516           58 FAKMRKLRFLKFYSSSFNGE-NRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNS-DIEQ------LW  129 (251)
Q Consensus        58 ~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~------l~  129 (251)
                      +..+++|+.|++++|.+.+. .+..+..+++|+.++++.+.+.+..+..+.   .+++|++|++++| .+++      +.
T Consensus        89 ~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~---~~~~L~~L~L~~~~~l~~~~l~~~~~  165 (336)
T 2ast_B           89 HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA---KNSNLVRLNLSGCSGFSEFALQTLLS  165 (336)
T ss_dssp             CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT---TCTTCSEEECTTCBSCCHHHHHHHHH
T ss_pred             hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHh---cCCCCCEEECCCCCCCCHHHHHHHHh
Confidence            44678888888888877653 344455666666666666554432111121   4778888888888 5542      44


Q ss_pred             CcCCccEEEcCCC-cCCcc-ccCccccCC-CccEEecCCCC--CC-CCCCccc--cCCccEEEccccC-Cc-cCCccccc
Q 025516          130 NSVKLVILNLSGS-KSLKS-LPAGIFNLE-FLTELDLSGCS--KL-KRLPEIS--SGNIGQLFLSGTA-IE-ELPSSFEL  199 (251)
Q Consensus       130 ~~~~L~~L~l~~n-~~~~~-~~~~~~~l~-~L~~L~l~~n~--~~-~~~~~~~--~~~L~~L~l~~n~-i~-~lp~~~~~  199 (251)
                      .+++|++|++++| .+.+. ++..++.++ +|++|++++|.  +. ..++...  +++|++|++++|. ++ ..+..+..
T Consensus       166 ~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~  245 (336)
T 2ast_B          166 SCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ  245 (336)
T ss_dssp             HCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG
T ss_pred             cCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhC
Confidence            5778888888888 54443 456667788 88888888884  22 2233322  7788888888888 55 55667778


Q ss_pred             CccCCEEeccCCc-CCccCcccccCCCCCCEEeccCC
Q 025516          200 LLRLWLLDLSDCK-RLKSLPSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       200 l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n  235 (251)
                      +++|+.|++++|. +.......++++++|++|++++|
T Consensus       246 l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          246 LNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            8888888888885 22222235677888888888887

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.68  E-value=3.5e-16  Score=131.16  Aligned_cols=148  Identities=16%  Similarity=0.097  Sum_probs=85.9

Q ss_pred             CCccEEEeecccCCCCCccccc-cCCcceecceeEEeeccCCCCCCCC-CC-CcCCceEeecCCCcccc-----ccCcCC
Q 025516           62 RKLRFLKFYSSSFNGENRCKVS-HLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAEKLMFLEVPNSDIEQ-----LWNSVK  133 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l~-~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~i~~-----l~~~~~  133 (251)
                      ..++.|++++|.+.+..+..+. .+.+|+.++|+.|.+..     ++. .+ .+.+|++|++++|++..     +..+.+
T Consensus        39 ~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~-----i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  113 (361)
T 2xot_A           39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF-----ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQA  113 (361)
T ss_dssp             TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred             CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCc-----cChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcC
Confidence            3466677777766655554444 45554444444444333     332 12 46677777777776653     334556


Q ss_pred             ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc-----ccCCccEEEccccCCccCCc-ccccCcc--CCE
Q 025516          134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI-----SSGNIGQLFLSGTAIEELPS-SFELLLR--LWL  205 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~~L~~L~l~~n~i~~lp~-~~~~l~~--L~~  205 (251)
                      |++|+|++|.+....|..+.++++|++|++++|.+.+..+..     .+++|+.|++++|.++.+|. .+..++.  ++.
T Consensus       114 L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~  193 (361)
T 2xot_A          114 LEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNG  193 (361)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTT
T ss_pred             CCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcce
Confidence            777777776655555666666777777777777654432222     15667777777777776663 3455555  366


Q ss_pred             EeccCCcCC
Q 025516          206 LDLSDCKRL  214 (251)
Q Consensus       206 L~l~~n~~~  214 (251)
                      |++++|++.
T Consensus       194 l~l~~N~~~  202 (361)
T 2xot_A          194 LYLHNNPLE  202 (361)
T ss_dssp             EECCSSCEE
T ss_pred             EEecCCCcc
Confidence            677766654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.67  E-value=8.1e-16  Score=120.14  Aligned_cols=134  Identities=22%  Similarity=0.224  Sum_probs=114.3

Q ss_pred             eEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCc
Q 025516          116 MFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE  191 (251)
Q Consensus       116 ~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~  191 (251)
                      +.++++++++..++.  ..+++.|++++|.+.+..+..+.++++|++|++++|.+.+..|..+  +++|++|++++|.++
T Consensus        14 ~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~   93 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT   93 (220)
T ss_dssp             TEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCC
T ss_pred             CEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCC
Confidence            567888998887765  3579999999998666666688899999999999999877666654  899999999999999


Q ss_pred             cCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          192 ELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       192 ~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      .+|.. +.++++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..++.+.
T Consensus        94 ~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  152 (220)
T 2v9t_B           94 ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR  152 (220)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCT
T ss_pred             ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCC
Confidence            99875 58899999999999999888889999999999999999888766655566543

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.67  E-value=3.2e-16  Score=130.82  Aligned_cols=183  Identities=19%  Similarity=0.103  Sum_probs=138.5

Q ss_pred             CCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCCceE-eecCCCcccc-----ccCcC
Q 025516           61 MRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEKLMF-LEVPNSDIEQ-----LWNSV  132 (251)
Q Consensus        61 l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~L~~-L~l~~n~i~~-----l~~~~  132 (251)
                      .++++.|++++|.++...+.+|..+.+|+.++|++|.+..    .++.. + ++.++.+ +.+.+|++..     +..++
T Consensus        29 ~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~----~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~  104 (350)
T 4ay9_X           29 PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE----VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP  104 (350)
T ss_dssp             CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCC----EECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCT
T ss_pred             CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCC----ccChhHhhcchhhhhhhcccCCcccccCchhhhhcc
Confidence            4689999999999998777788888888877777776533    34432 2 5777665 5566788764     45678


Q ss_pred             CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc----cCCccEEEccccCCccCCcccccCccCCEEec
Q 025516          133 KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS----SGNIGQLFLSGTAIEELPSSFELLLRLWLLDL  208 (251)
Q Consensus       133 ~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~----~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l  208 (251)
                      +|++|++++|.+....+..+....++..+++.++...+.++...    ...++.|++++|+++.+|.......+|+.+++
T Consensus       105 ~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l  184 (350)
T 4ay9_X          105 NLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNL  184 (350)
T ss_dssp             TCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEEC
T ss_pred             ccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhh
Confidence            99999999998665555555567788899998876666655432    34688999999999999988777889999999


Q ss_pred             cCCcCCccCc-ccccCCCCCCEEeccCCcCCCCCChh-hhhc
Q 025516          209 SDCKRLKSLP-SSLCKLKSLELLSLRGCSNLQRLPDR-LASY  248 (251)
Q Consensus       209 ~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l  248 (251)
                      ++|...+.+| ..++.+++|++|++++|++. .+|.+ +..+
T Consensus       185 ~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~-~lp~~~~~~L  225 (350)
T 4ay9_X          185 SDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENL  225 (350)
T ss_dssp             TTCTTCCCCCTTTTTTEECCSEEECTTSCCC-CCCSSSCTTC
T ss_pred             ccCCcccCCCHHHhccCcccchhhcCCCCcC-ccChhhhccc
Confidence            8766677777 46799999999999997654 67753 4433

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.67  E-value=1.1e-15  Score=119.26  Aligned_cols=134  Identities=16%  Similarity=0.121  Sum_probs=114.4

Q ss_pred             eEeecCCCccccccC--cCCccEEEcCCCcCCcccc-CccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCC
Q 025516          116 MFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLP-AGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAI  190 (251)
Q Consensus       116 ~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i  190 (251)
                      +.+++++|.+..++.  ...+++|++++|.+.+..+ ..++++++|++|++++|.+.+..+..+  +++|++|++++|.+
T Consensus        14 ~~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l   93 (220)
T 2v70_A           14 TTVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL   93 (220)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             CEeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCcc
Confidence            578999999988774  3468999999998666544 447889999999999998776655433  89999999999999


Q ss_pred             ccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          191 EELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       191 ~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      +.++. .+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..++.+.
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~  153 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLH  153 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCT
T ss_pred             CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCC
Confidence            98876 478999999999999999888899999999999999999998887788877654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.67  E-value=1.4e-17  Score=151.43  Aligned_cols=183  Identities=19%  Similarity=0.142  Sum_probs=102.2

Q ss_pred             CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccccc----cCcCCccE
Q 025516           62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQL----WNSVKLVI  136 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~l----~~~~~L~~  136 (251)
                      +.++.|.+.+|.+..... .+-....|..+.+....+..+.+...+..+ .+..|+.|++++|.+..+    ..+.+|++
T Consensus       173 ~~~~~l~L~~n~~~~~~~-~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~  251 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQ-ALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR  251 (727)
T ss_dssp             --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred             CccceEEeeCCCCCcchh-hHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence            456777777766554211 111111222222333333333333334334 578899999999888643    45778999


Q ss_pred             EEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcCC
Q 025516          137 LNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRL  214 (251)
Q Consensus       137 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~  214 (251)
                      |+|++|.+. .+|..++++++|++|++++|.+. .+|..+  +++|++|+|++|.++.+|..++.+++|+.|+|++|.+.
T Consensus       252 L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~  329 (727)
T 4b8c_D          252 LYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLE  329 (727)
T ss_dssp             CBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCC
T ss_pred             EEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccC
Confidence            999998755 78888888999999999999876 666644  78899999999999989888889999999999999988


Q ss_pred             ccCcccccCCCC-CCEEeccCCcCCCCCChhhhh
Q 025516          215 KSLPSSLCKLKS-LELLSLRGCSNLQRLPDRLAS  247 (251)
Q Consensus       215 ~~~p~~~~~l~~-L~~L~l~~n~~~~~~p~~l~~  247 (251)
                      +.+|..+..+.. +..+++++|.+.+.+|..+..
T Consensus       330 ~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~l~~  363 (727)
T 4b8c_D          330 KQFLKILTEKSVTGLIFYLRDNRPEIPLPHERRF  363 (727)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---
T ss_pred             CCChHHHhhcchhhhHHhhccCcccCcCccccce
Confidence            877776644321 122456666666666655443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.67  E-value=1.1e-17  Score=140.22  Aligned_cols=190  Identities=12%  Similarity=-0.001  Sum_probs=122.6

Q ss_pred             chhhhcCCCccEEEeecccCCCCCc----cccccCC-cceecceeEEeeccCCCCCCCCCC-C-cCCceEeecCCCcccc
Q 025516           55 PNTFAKMRKLRFLKFYSSSFNGENR----CKVSHLQ-DLRFAEVKYLHWHGYPLKSLPSNH-S-AEKLMFLEVPNSDIEQ  127 (251)
Q Consensus        55 ~~~~~~l~~L~~L~l~~n~~~~~~~----~~l~~l~-~l~~l~L~~~~l~~~~~~~~~~~~-~-l~~L~~L~l~~n~i~~  127 (251)
                      +..+...++|+.|++++|.+.+..+    ..+..+. .++.++|+.|.+.+.....+...+ . ..+|++|++++|++..
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~   94 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY   94 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred             HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence            5555566679999999999887665    4555555 677777777666653322222111 1 2788999999998864


Q ss_pred             c---------cCc-CCccEEEcCCCcCCccccCccc----c-CCCccEEecCCCCCCCCCCc----cc--c-CCccEEEc
Q 025516          128 L---------WNS-VKLVILNLSGSKSLKSLPAGIF----N-LEFLTELDLSGCSKLKRLPE----IS--S-GNIGQLFL  185 (251)
Q Consensus       128 l---------~~~-~~L~~L~l~~n~~~~~~~~~~~----~-l~~L~~L~l~~n~~~~~~~~----~~--~-~~L~~L~l  185 (251)
                      .         ... ++|++|++++|.+....+..++    . .++|++|++++|.+......    ..  . ++|++|++
T Consensus        95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~L  174 (362)
T 3goz_A           95 KSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNL  174 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEEC
T ss_pred             HHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeee
Confidence            2         233 6888999988886554443333    3 35888888888876532221    11  2 37888888


Q ss_pred             cccCCccCCc-----ccccC-ccCCEEeccCCcCCcc----CcccccC-CCCCCEEeccCCcCCCCCChh
Q 025516          186 SGTAIEELPS-----SFELL-LRLWLLDLSDCKRLKS----LPSSLCK-LKSLELLSLRGCSNLQRLPDR  244 (251)
Q Consensus       186 ~~n~i~~lp~-----~~~~l-~~L~~L~l~~n~~~~~----~p~~~~~-l~~L~~L~l~~n~~~~~~p~~  244 (251)
                      ++|.++....     .+..+ ++|+.|++++|.+...    ++..+.. .++|++|++++|.+.+.-+..
T Consensus       175 s~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~  244 (362)
T 3goz_A          175 RGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLEN  244 (362)
T ss_dssp             TTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHH
T ss_pred             cCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHH
Confidence            8888874432     33444 4888888888886552    4445544 457888888887766554433

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=1.1e-15  Score=116.75  Aligned_cols=127  Identities=20%  Similarity=0.154  Sum_probs=85.9

Q ss_pred             eEeecCCCccccccC--cCCccEEEcCCCcCCccccC-ccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCC
Q 025516          116 MFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPA-GIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAI  190 (251)
Q Consensus       116 ~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~-~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i  190 (251)
                      ++++++++++..++.  ..++++|++++|.+.+..+. .++.+++|++|++++|.+.+..|..+  +++|++|++++|++
T Consensus        11 ~~l~~s~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l   90 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI   90 (192)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCC
T ss_pred             CEEEcCCCCcCcCccCCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcC
Confidence            445555555554443  22677777777764444333 36677777777777777666655543  67777777777777


Q ss_pred             ccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          191 EELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       191 ~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      +.++. .+.++++|+.|++++|++.+..|..+..+++|++|++++|++.+..+
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            76554 46777888888888888777777777788888888888877776554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.65  E-value=8.2e-16  Score=114.90  Aligned_cols=130  Identities=22%  Similarity=0.234  Sum_probs=104.4

Q ss_pred             cCCceEeecCCCccc--cc----cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEE
Q 025516          112 AEKLMFLEVPNSDIE--QL----WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQL  183 (251)
Q Consensus       112 l~~L~~L~l~~n~i~--~l----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L  183 (251)
                      ..+|++|++++|++.  .+    ..+++|++|++++|.+.+.  ..++.+++|++|++++|.+.+.+|...  +++|+.|
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence            356777777777765  43    4467899999999885544  668889999999999998877677654  8899999


Q ss_pred             EccccCCccCC--cccccCccCCEEeccCCcCCccCc---ccccCCCCCCEEeccCCcCCCCCChh
Q 025516          184 FLSGTAIEELP--SSFELLLRLWLLDLSDCKRLKSLP---SSLCKLKSLELLSLRGCSNLQRLPDR  244 (251)
Q Consensus       184 ~l~~n~i~~lp--~~~~~l~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~l~~n~~~~~~p~~  244 (251)
                      ++++|.++.+|  ..+..+++|+.|++++|++.+..+   ..+..+++|++|++++|... ++|++
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            99999999876  678899999999999999776554   47899999999999997554 56654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.65  E-value=9e-19  Score=154.88  Aligned_cols=178  Identities=20%  Similarity=0.119  Sum_probs=127.5

Q ss_pred             hcCCCccEEEeecccCCCCCccccccCCcceecceeEEee--------cc-CCCCCCCCCC-CcCCceEee-cCCCc---
Q 025516           59 AKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHW--------HG-YPLKSLPSNH-SAEKLMFLE-VPNSD---  124 (251)
Q Consensus        59 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l--------~~-~~~~~~~~~~-~l~~L~~L~-l~~n~---  124 (251)
                      ..+++|+.|++++|.+. ..|..++.+..|+.++++.+..        .. +..+..|..+ .+.+|+.|+ ++.|.   
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~  424 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  424 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccch
Confidence            45777888888888765 3455666666666665543320        00 0111222222 355666666 44443   


Q ss_pred             ----------cccccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCcc
Q 025516          125 ----------IEQLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEE  192 (251)
Q Consensus       125 ----------i~~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~  192 (251)
                                +..++. ..|++|++++|.+. .+|. ++.+++|+.|++++|.+. .+|..+  +++|+.|++++|.++.
T Consensus       425 L~~l~l~~n~i~~l~~-~~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~  500 (567)
T 1dce_A          425 LRSKFLLENSVLKMEY-ADVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN  500 (567)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             hhhhhhhcccccccCc-cCceEEEecCCCCC-CCcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC
Confidence                      333332 25899999999754 4776 889999999999999876 666644  8899999999999999


Q ss_pred             CCcccccCccCCEEeccCCcCCccC-cccccCCCCCCEEeccCCcCCCCCC
Q 025516          193 LPSSFELLLRLWLLDLSDCKRLKSL-PSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       193 lp~~~~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      +| .++.+++|+.|++++|.+.+.. |..++.+++|+.|++++|++.+..|
T Consensus       501 lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~  550 (567)
T 1dce_A          501 VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  550 (567)
T ss_dssp             CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence            88 7899999999999999987776 8999999999999999988765443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.65  E-value=3.1e-15  Score=117.51  Aligned_cols=133  Identities=20%  Similarity=0.100  Sum_probs=111.1

Q ss_pred             ceEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCC
Q 025516          115 LMFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAI  190 (251)
Q Consensus       115 L~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i  190 (251)
                      -+.++.+++++..++.  .++|++|++++|.+.+..|..++++++|++|++++|.+....+..+  +++|+.|++++|.+
T Consensus        21 ~~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l  100 (229)
T 3e6j_A           21 GTTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQL  100 (229)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcC
Confidence            5578888888887764  4689999999999888778889999999999999998755444433  88999999999999


Q ss_pred             ccCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          191 EELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       191 ~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      +.+|.. +..+++|+.|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+
T Consensus       101 ~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  158 (229)
T 3e6j_A          101 TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL  158 (229)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred             CccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence            988764 689999999999999976 788889999999999999987765444445544

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.64  E-value=1.2e-15  Score=122.34  Aligned_cols=149  Identities=15%  Similarity=0.137  Sum_probs=104.7

Q ss_pred             hhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccccCc--CCc
Q 025516           57 TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNS--VKL  134 (251)
Q Consensus        57 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~~--~~L  134 (251)
                      .+..+++|+.|++++|.+....  .+..+.+++.++++     ++.+..++....+++|++|++++|++..++..  .+|
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~L~-----~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~~~~~~~L  108 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLA--GMQFFTNLKELHLS-----HNQISDLSPLKDLTKLEELSVNRNRLKNLNGIPSACL  108 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCT--TGGGCTTCCEEECC-----SSCCCCCGGGTTCSSCCEEECCSSCCSCCTTCCCSSC
T ss_pred             chhhcCcCcEEECcCCCcccch--HHhhCCCCCEEECC-----CCccCCChhhccCCCCCEEECCCCccCCcCccccCcc
Confidence            4678899999999999877532  44555554444444     44444555534678888888888888754432  578


Q ss_pred             cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516          135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR  213 (251)
Q Consensus       135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~  213 (251)
                      ++|++++|.+.+ ++ .++++++|++|++++|.+.+. +... +++|+.|++++|.++.+ ..+..+++|+.|++++|++
T Consensus       109 ~~L~L~~N~l~~-~~-~l~~l~~L~~L~Ls~N~i~~~-~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~  184 (263)
T 1xeu_A          109 SRLFLDNNELRD-TD-SLIHLKNLEILSIRNNKLKSI-VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKC  184 (263)
T ss_dssp             CEEECCSSCCSB-SG-GGTTCTTCCEEECTTSCCCBC-GGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEE
T ss_pred             cEEEccCCccCC-Ch-hhcCcccccEEECCCCcCCCC-hHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcc
Confidence            888888887444 33 477788888888888876543 3332 78888888888888877 5677788888888888876


Q ss_pred             Ccc
Q 025516          214 LKS  216 (251)
Q Consensus       214 ~~~  216 (251)
                      ...
T Consensus       185 ~~~  187 (263)
T 1xeu_A          185 VNE  187 (263)
T ss_dssp             ECC
T ss_pred             cCC
Confidence            544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.64  E-value=9.6e-19  Score=150.98  Aligned_cols=104  Identities=17%  Similarity=0.115  Sum_probs=55.4

Q ss_pred             CcCCceEeecCCCccccc----------cCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCCCCccc
Q 025516          111 SAEKLMFLEVPNSDIEQL----------WNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKRLPEIS  176 (251)
Q Consensus       111 ~l~~L~~L~l~~n~i~~l----------~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~  176 (251)
                      .+++|++|++++|.+...          ...++|++|++++|.+...    ++..+..+++|++|++++|.+....+...
T Consensus       225 ~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l  304 (461)
T 1z7x_W          225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL  304 (461)
T ss_dssp             HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred             hCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHH
Confidence            356777777777776431          1356777777777764442    45555566777777777765432111100


Q ss_pred             -------cCCccEEEccccCCcc-----CCcccccCccCCEEeccCCcCC
Q 025516          177 -------SGNIGQLFLSGTAIEE-----LPSSFELLLRLWLLDLSDCKRL  214 (251)
Q Consensus       177 -------~~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~~  214 (251)
                             .++|++|++++|.++.     ++..+..+++|+.|++++|.+.
T Consensus       305 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          305 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             HHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence                   1355555555555442     2333344445555555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.63  E-value=1.1e-15  Score=111.86  Aligned_cols=120  Identities=24%  Similarity=0.206  Sum_probs=80.7

Q ss_pred             CCceEeecCCCccc--cc----cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEE
Q 025516          113 EKLMFLEVPNSDIE--QL----WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLF  184 (251)
Q Consensus       113 ~~L~~L~l~~n~i~--~l----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~  184 (251)
                      .+|+.|++++|.+.  .+    ..+++|++|++++|.+.+.  ..++.+++|++|++++|.+.+.+|...  +++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45556666665554  22    3456677777777764443  556677777777777777666555543  67777788


Q ss_pred             ccccCCccCC--cccccCccCCEEeccCCcCCccCc---ccccCCCCCCEEeccC
Q 025516          185 LSGTAIEELP--SSFELLLRLWLLDLSDCKRLKSLP---SSLCKLKSLELLSLRG  234 (251)
Q Consensus       185 l~~n~i~~lp--~~~~~l~~L~~L~l~~n~~~~~~p---~~~~~l~~L~~L~l~~  234 (251)
                      +++|.++.+|  ..++.+++|+.|++++|++.+..+   ..++.+++|++|++++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            8778777654  567778888888888887665544   4677788888887753

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.62  E-value=1.6e-15  Score=121.66  Aligned_cols=167  Identities=17%  Similarity=0.181  Sum_probs=129.9

Q ss_pred             cCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCCccE
Q 025516           60 KMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVKLVI  136 (251)
Q Consensus        60 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~L~~  136 (251)
                      .+.++..++++++.+.+..  .+..+.+     |+.++++++.+..++....+++|++|++++|++.+   +..+++|++
T Consensus        17 ~l~~l~~l~l~~~~i~~~~--~~~~l~~-----L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~   89 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTDLV--SQKELSG-----VQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEE   89 (263)
T ss_dssp             HHHHHHHHHHTCSCTTSEE--CHHHHTT-----CSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCE
T ss_pred             HHHHHHHHHhcCCCccccc--chhhcCc-----CcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCE
Confidence            4566777778888766432  2344444     55556666666677744478999999999999875   456789999


Q ss_pred             EEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCc
Q 025516          137 LNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLK  215 (251)
Q Consensus       137 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~  215 (251)
                      |++++|.+. .+|. +.. ++|++|++++|.+.+ ++... +++|+.|++++|+++.++ .+..+++|+.|++++|++.+
T Consensus        90 L~L~~N~l~-~l~~-~~~-~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~  164 (263)
T 1xeu_A           90 LSVNRNRLK-NLNG-IPS-ACLSRLFLDNNELRD-TDSLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITN  164 (263)
T ss_dssp             EECCSSCCS-CCTT-CCC-SSCCEEECCSSCCSB-SGGGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCB
T ss_pred             EECCCCccC-CcCc-ccc-CcccEEEccCCccCC-ChhhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcc
Confidence            999999854 4554 333 899999999998665 34433 899999999999999887 68899999999999999876


Q ss_pred             cCcccccCCCCCCEEeccCCcCCCC
Q 025516          216 SLPSSLCKLKSLELLSLRGCSNLQR  240 (251)
Q Consensus       216 ~~p~~~~~l~~L~~L~l~~n~~~~~  240 (251)
                      .  ..+..+++|+.|++++|++...
T Consensus       165 ~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          165 T--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             C--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             h--HHhccCCCCCEEeCCCCcccCC
Confidence            5  6689999999999999877654

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.61  E-value=6.5e-18  Score=145.78  Aligned_cols=38  Identities=32%  Similarity=0.225  Sum_probs=19.4

Q ss_pred             CccCCEEeccCCcCCcc----CcccccCCCCCCEEeccCCcC
Q 025516          200 LLRLWLLDLSDCKRLKS----LPSSLCKLKSLELLSLRGCSN  237 (251)
Q Consensus       200 l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~  237 (251)
                      +++|+.|++++|.+...    ++..+..+++|++|++++|.+
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i  296 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL  296 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence            45555555555554432    344444555555555555544

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.61  E-value=1.1e-14  Score=109.75  Aligned_cols=127  Identities=18%  Similarity=0.122  Sum_probs=89.4

Q ss_pred             eEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCc
Q 025516          116 MFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE  191 (251)
Q Consensus       116 ~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~  191 (251)
                      +.++++++++..++.  ..+|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+  +++|++|++++|.++
T Consensus        10 ~~l~~~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~   89 (177)
T 2o6r_A           10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ   89 (177)
T ss_dssp             TEEECCSSCCSSCCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEEEecCCCCccCCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc
Confidence            345555555554432  3467888888877555444556778888888888887665444432  778888888888888


Q ss_pred             cCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          192 ELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       192 ~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      .+|.. +..+++|+.|++++|.+.+..+..+..+++|++|++++|++.+..|
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            77664 5778888888888888765544556788888888888888776554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.60  E-value=1.1e-15  Score=115.17  Aligned_cols=124  Identities=15%  Similarity=0.139  Sum_probs=91.6

Q ss_pred             CcCCceEeecCCCcccccc---CcC-CccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEE
Q 025516          111 SAEKLMFLEVPNSDIEQLW---NSV-KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLF  184 (251)
Q Consensus       111 ~l~~L~~L~l~~n~i~~l~---~~~-~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~  184 (251)
                      .+.+|+.|++++|+++.++   ... +|++|++++|.+.+ + ..++.+++|++|++++|.+.+..+..+  +++|++|+
T Consensus        17 ~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           17 NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             CTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             CcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            5667777777777776543   233 78888888887544 3 567778888888888887665443332  78888888


Q ss_pred             ccccCCccCCc--ccccCccCCEEeccCCcCCccCccc----ccCCCCCCEEeccCCcC
Q 025516          185 LSGTAIEELPS--SFELLLRLWLLDLSDCKRLKSLPSS----LCKLKSLELLSLRGCSN  237 (251)
Q Consensus       185 l~~n~i~~lp~--~~~~l~~L~~L~l~~n~~~~~~p~~----~~~l~~L~~L~l~~n~~  237 (251)
                      +++|.++.+|.  .+..+++|+.|++++|++. .+|..    +..+++|++|++++|..
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCH
Confidence            88888888876  6788888899999888865 44553    78888899988888753

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.60  E-value=1.3e-14  Score=110.87  Aligned_cols=121  Identities=21%  Similarity=0.207  Sum_probs=73.4

Q ss_pred             EeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCcc
Q 025516          117 FLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEE  192 (251)
Q Consensus       117 ~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~  192 (251)
                      .++++++++..++.  ..+|++|++++|.+ ..+|..++++++|++|++++|.+.+..+..+  +++|++|++++|.++.
T Consensus        14 ~l~~~~~~l~~ip~~~~~~l~~L~L~~n~i-~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           14 VVRCSNKGLKVLPKGIPRDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRC   92 (193)
T ss_dssp             EEECTTSCCSSCCSCCCTTCCEEECCSSCC-CSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred             EEEcCCCCCCcCCCCCCCCCCEEECCCCcC-chhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCE
Confidence            34445555444432  23566666666653 3555566666667777777666555444333  5667777777777766


Q ss_pred             CCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC
Q 025516          193 LPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL  238 (251)
Q Consensus       193 lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~  238 (251)
                      ++. .+..+++|+.|++++|.+....+..+..+++|++|++++|+..
T Consensus        93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            554 4666777777777777765444445666777777777776554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.57  E-value=4e-15  Score=135.29  Aligned_cols=117  Identities=26%  Similarity=0.319  Sum_probs=103.5

Q ss_pred             ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCCE
Q 025516          128 LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWL  205 (251)
Q Consensus       128 l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~  205 (251)
                      +..+..|++|+|++|.+ ..+|..++++++|++|++++|.+. .+|..+  +++|+.|+|++|.++.+|..++.+++|+.
T Consensus       220 ~~~l~~L~~L~Ls~n~l-~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~  297 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQI-FNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKY  297 (727)
T ss_dssp             --CCCCCCEEECTTSCC-SCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSE
T ss_pred             hccCCCCcEEECCCCCC-CCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCE
Confidence            55678999999999985 478888889999999999999877 677644  89999999999999999999999999999


Q ss_pred             EeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhh
Q 025516          206 LDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLAS  247 (251)
Q Consensus       206 L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~  247 (251)
                      |+|++|.+ +.+|..++.+++|++|++++|.+.+.+|..+..
T Consensus       298 L~L~~N~l-~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~  338 (727)
T 4b8c_D          298 FYFFDNMV-TTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTE  338 (727)
T ss_dssp             EECCSSCC-CCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHH
T ss_pred             EECCCCCC-CccChhhhcCCCccEEeCCCCccCCCChHHHhh
Confidence            99999986 478888999999999999999999988887754

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.57  E-value=1.1e-14  Score=106.46  Aligned_cols=119  Identities=21%  Similarity=0.106  Sum_probs=98.3

Q ss_pred             CcCCccEEEcCCCcCC-ccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCcc-CCcccccCccCCEE
Q 025516          130 NSVKLVILNLSGSKSL-KSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEE-LPSSFELLLRLWLL  206 (251)
Q Consensus       130 ~~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~-lp~~~~~l~~L~~L  206 (251)
                      ...+|+.|++++|.+. +.+|..++.+++|++|++++|.+.+. +... +++|+.|++++|.++. +|..++.+++|+.|
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            3467999999999876 58888889999999999999987665 3333 8899999999999997 77777889999999


Q ss_pred             eccCCcCCcc-CcccccCCCCCCEEeccCCcCCCCCC---hhhhhcc
Q 025516          207 DLSDCKRLKS-LPSSLCKLKSLELLSLRGCSNLQRLP---DRLASYR  249 (251)
Q Consensus       207 ~l~~n~~~~~-~p~~~~~l~~L~~L~l~~n~~~~~~p---~~l~~l~  249 (251)
                      ++++|.+.+. .+..++.+++|++|++++|.+.+..+   ..++.++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~  140 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP  140 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCC
Confidence            9999997763 34789999999999999987765444   2455443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.54  E-value=8.6e-14  Score=106.27  Aligned_cols=120  Identities=20%  Similarity=0.160  Sum_probs=82.7

Q ss_pred             eccCCCCCCCCCCCcCCceEeecCCCcccc------ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCC
Q 025516           98 WHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ------LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKR  171 (251)
Q Consensus        98 l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~------l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~  171 (251)
                      ++++.++.+|..+ ..++++|++++|++..      +..+++|++|++++|.+.+..|..++++++|++|++++|.+.+.
T Consensus        15 ~s~~~l~~ip~~~-~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~   93 (192)
T 1w8a_A           15 CTGRGLKEIPRDI-PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI   93 (192)
T ss_dssp             CTTSCCSSCCSCC-CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEE
T ss_pred             cCCCCcCcCccCC-CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCcc
Confidence            3344444455433 1266666666666643      34566788888888877666677788888888888888877666


Q ss_pred             CCccc--cCCccEEEccccCCccC-CcccccCccCCEEeccCCcCCccCc
Q 025516          172 LPEIS--SGNIGQLFLSGTAIEEL-PSSFELLLRLWLLDLSDCKRLKSLP  218 (251)
Q Consensus       172 ~~~~~--~~~L~~L~l~~n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p  218 (251)
                      .+..+  +++|++|++++|+++.+ |..+..+++|+.|++++|++....+
T Consensus        94 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~  143 (192)
T 1w8a_A           94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH  143 (192)
T ss_dssp             CSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred             CHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence            55533  67888888888888854 5567788888888888888765443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.53  E-value=5e-14  Score=105.10  Aligned_cols=118  Identities=22%  Similarity=0.108  Sum_probs=96.9

Q ss_pred             cCCccEEEcCCCcCC-ccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCcc-CCcccccCccCCEEe
Q 025516          131 SVKLVILNLSGSKSL-KSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEE-LPSSFELLLRLWLLD  207 (251)
Q Consensus       131 ~~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~-lp~~~~~l~~L~~L~  207 (251)
                      .++|++|++++|.+. +.+|..+..+++|++|++++|.+... +... +++|++|++++|.++. +|..+..+++|+.|+
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            468999999999866 58888888999999999999987665 4333 8899999999999997 777777899999999


Q ss_pred             ccCCcCCccC-cccccCCCCCCEEeccCCcCCCCCC---hhhhhcc
Q 025516          208 LSDCKRLKSL-PSSLCKLKSLELLSLRGCSNLQRLP---DRLASYR  249 (251)
Q Consensus       208 l~~n~~~~~~-p~~~~~l~~L~~L~l~~n~~~~~~p---~~l~~l~  249 (251)
                      +++|.+.+.. +..++.+++|++|++++|.+.+..+   ..++.++
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~  147 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLP  147 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCc
Confidence            9999976542 2789999999999999988775443   2555443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.50  E-value=2.9e-13  Score=103.41  Aligned_cols=116  Identities=22%  Similarity=0.161  Sum_probs=84.6

Q ss_pred             eccCCCCCCCCCCCcCCceEeecCCCcccc----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCC
Q 025516           98 WHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLP  173 (251)
Q Consensus        98 l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  173 (251)
                      .+++.++.+|..+ ..+|++|++++|++..    +..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+
T Consensus        17 ~~~~~l~~ip~~~-~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~   95 (193)
T 2wfh_A           17 CSNKGLKVLPKGI-PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP   95 (193)
T ss_dssp             CTTSCCSSCCSCC-CTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCT
T ss_pred             cCCCCCCcCCCCC-CCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCH
Confidence            3444444555432 2466777777776654    3456788888888888666666778888888888888888766655


Q ss_pred             ccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCC
Q 025516          174 EIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRL  214 (251)
Q Consensus       174 ~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~  214 (251)
                      ..+  +++|+.|++++|.++.+|. .+..+++|+.|++++|++.
T Consensus        96 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           96 RTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             TTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             HHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            443  7888899999998888876 4678889999999988764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.48  E-value=6.5e-13  Score=99.91  Aligned_cols=119  Identities=19%  Similarity=0.138  Sum_probs=88.2

Q ss_pred             ccCCCCCCCCCCCcCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCC
Q 025516           99 HGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLP  173 (251)
Q Consensus        99 ~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~  173 (251)
                      .++.+..+|... ..+|++|++++|++..     +..+++|++|++++|.+.+..+..++++++|++|++++|.+.+..+
T Consensus        15 ~~~~l~~~p~~~-~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~   93 (177)
T 2o6r_A           15 NSKGLTSVPTGI-PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPN   93 (177)
T ss_dssp             CSSCCSSCCTTC-CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred             cCCCCccCCCCC-CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCH
Confidence            333444454322 3567777777777754     3456789999999988665555557789999999999998776555


Q ss_pred             ccc--cCCccEEEccccCCccCCcc-cccCccCCEEeccCCcCCccCc
Q 025516          174 EIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDCKRLKSLP  218 (251)
Q Consensus       174 ~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~p  218 (251)
                      ..+  +++|++|++++|.++.+|.. +..+++|+.|++++|++....|
T Consensus        94 ~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           94 GVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             HHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            433  78999999999999988875 4789999999999999876554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.47  E-value=1.8e-13  Score=102.89  Aligned_cols=99  Identities=16%  Similarity=0.151  Sum_probs=76.4

Q ss_pred             CceEeecCCCccc---cccCcCCccEEEcCCCcCCccccCc-cccCCCccEEecCCCCCCCCCCc---cc-cCCccEEEc
Q 025516          114 KLMFLEVPNSDIE---QLWNSVKLVILNLSGSKSLKSLPAG-IFNLEFLTELDLSGCSKLKRLPE---IS-SGNIGQLFL  185 (251)
Q Consensus       114 ~L~~L~l~~n~i~---~l~~~~~L~~L~l~~n~~~~~~~~~-~~~l~~L~~L~l~~n~~~~~~~~---~~-~~~L~~L~l  185 (251)
                      +|++|++++|++.   .+..+++|++|++++|.+. .+|.. ++.+++|++|++++|.+ +.+|.   .. +++|+.|++
T Consensus        43 ~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i-~~~~~~~~l~~l~~L~~L~l  120 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSL-VELGDLDPLASLKSLTYLCI  120 (176)
T ss_dssp             CCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCC-CCGGGGGGGGGCTTCCEEEC
T ss_pred             CCCEEECCCCCCCcccccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcC-CcchhhHhhhcCCCCCEEEe
Confidence            6666666666664   3556778999999998755 44544 47899999999999976 44443   22 789999999


Q ss_pred             cccCCccCCcc----cccCccCCEEeccCCcCC
Q 025516          186 SGTAIEELPSS----FELLLRLWLLDLSDCKRL  214 (251)
Q Consensus       186 ~~n~i~~lp~~----~~~l~~L~~L~l~~n~~~  214 (251)
                      ++|.++.+|..    +..+++|+.|++++|...
T Consensus       121 ~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A          121 LRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             cCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999988875    889999999999998754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.44  E-value=1.6e-12  Score=97.67  Aligned_cols=98  Identities=16%  Similarity=0.113  Sum_probs=48.8

Q ss_pred             eEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCc
Q 025516          116 MFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE  191 (251)
Q Consensus       116 ~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~  191 (251)
                      +.++++++++..++.  ..+|++|++++|.+.+..|..++++++|++|++++|.+.+..+..+  +++|+.|++++|+++
T Consensus        15 ~~l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~   94 (174)
T 2r9u_A           15 TLVNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLK   94 (174)
T ss_dssp             SEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cEEEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccc
Confidence            455566665555443  2456666666665444445555555555555555554433222221  444555555555554


Q ss_pred             cCCcc-cccCccCCEEeccCCcC
Q 025516          192 ELPSS-FELLLRLWLLDLSDCKR  213 (251)
Q Consensus       192 ~lp~~-~~~l~~L~~L~l~~n~~  213 (251)
                      .+|.. +..+++|+.|++++|++
T Consensus        95 ~l~~~~~~~l~~L~~L~L~~N~~  117 (174)
T 2r9u_A           95 SIPRGAFDNLKSLTHIYLYNNPW  117 (174)
T ss_dssp             CCCTTTTTTCTTCSEEECCSSCB
T ss_pred             eeCHHHhccccCCCEEEeCCCCc
Confidence            44432 44444555555554443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.43  E-value=7.2e-13  Score=117.19  Aligned_cols=172  Identities=14%  Similarity=0.115  Sum_probs=130.7

Q ss_pred             chhhhcCCCccEEEeeccc-------------CCCCCccccccCCcceecc-eeEE--------eeccCCCCCCCCCCCc
Q 025516           55 PNTFAKMRKLRFLKFYSSS-------------FNGENRCKVSHLQDLRFAE-VKYL--------HWHGYPLKSLPSNHSA  112 (251)
Q Consensus        55 ~~~~~~l~~L~~L~l~~n~-------------~~~~~~~~l~~l~~l~~l~-L~~~--------~l~~~~~~~~~~~~~l  112 (251)
                      |..++.+++|+.|++++|.             ..+..+..+..+..|+.++ ++.+        .+.++.+..++    .
T Consensus       365 p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l~----~  440 (567)
T 1dce_A          365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKME----Y  440 (567)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred             HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchhhhhhhhcccccccC----c
Confidence            7788999999999987664             3344444555555665554 3333        23333333332    2


Q ss_pred             CCceEeecCCCccccc---cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEcccc
Q 025516          113 EKLMFLEVPNSDIEQL---WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGT  188 (251)
Q Consensus       113 ~~L~~L~l~~n~i~~l---~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n  188 (251)
                      ..|+.|++++|+++.+   ..+++|+.|++++|.+. .+|..++++++|++|++++|.+.+ +|... +++|+.|++++|
T Consensus       441 ~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp~l~~l~~L~~L~Ls~N  518 (567)
T 1dce_A          441 ADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNN  518 (567)
T ss_dssp             TTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSS
T ss_pred             cCceEEEecCCCCCCCcCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-CcccCCCCCCcEEECCCC
Confidence            3588999999998755   45678999999999855 889999999999999999998776 66443 899999999999


Q ss_pred             CCccC--CcccccCccCCEEeccCCcCCccCcc---cccCCCCCCEEec
Q 025516          189 AIEEL--PSSFELLLRLWLLDLSDCKRLKSLPS---SLCKLKSLELLSL  232 (251)
Q Consensus       189 ~i~~l--p~~~~~l~~L~~L~l~~n~~~~~~p~---~~~~l~~L~~L~l  232 (251)
                      .++.+  |..++.+++|+.|++++|++.+..|.   .+..+++|+.|++
T Consensus       519 ~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          519 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            99987  88999999999999999998766542   2355899999864

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.43  E-value=1.7e-12  Score=97.05  Aligned_cols=100  Identities=18%  Similarity=0.131  Sum_probs=55.8

Q ss_pred             ceEeecCCCccccccC--cCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCC
Q 025516          115 LMFLEVPNSDIEQLWN--SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAI  190 (251)
Q Consensus       115 L~~L~l~~n~i~~l~~--~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i  190 (251)
                      .+.+++++|++..++.  ..+|++|++++|.+.+..|..++++++|++|++++|.+.+..+..+  +++|++|++++|++
T Consensus        11 ~~~l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l   90 (170)
T 3g39_A           11 GTTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQL   90 (170)
T ss_dssp             TTEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCEEEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCcc
Confidence            3556666666665543  3456666666666555555556666666666666665544333322  45555555555555


Q ss_pred             ccCCc-ccccCccCCEEeccCCcCC
Q 025516          191 EELPS-SFELLLRLWLLDLSDCKRL  214 (251)
Q Consensus       191 ~~lp~-~~~~l~~L~~L~l~~n~~~  214 (251)
                      +.+|. .+..+++|+.|++++|++.
T Consensus        91 ~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           91 KSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            55544 2455555555555555543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.41  E-value=1.1e-15  Score=117.29  Aligned_cols=118  Identities=21%  Similarity=0.160  Sum_probs=75.1

Q ss_pred             cCCceEeecCCCccccc---cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccc
Q 025516          112 AEKLMFLEVPNSDIEQL---WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSG  187 (251)
Q Consensus       112 l~~L~~L~l~~n~i~~l---~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~  187 (251)
                      +++|++|++++|++..+   ..+++|++|++++|.+ ..+|..++.+++|++|++++|.+.+ +|... +++|+.|++++
T Consensus        47 l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l-~~l~~~~~~~~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~l~~  124 (198)
T 1ds9_A           47 LKACKHLALSTNNIEKISSLSGMENLRILSLGRNLI-KKIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMSN  124 (198)
T ss_dssp             TTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEE-CSCSSHHHHHHHCSEEEEEEEECCC-HHHHHHHHHSSEEEESE
T ss_pred             CCCCCEEECCCCCCccccccccCCCCCEEECCCCCc-ccccchhhcCCcCCEEECcCCcCCc-CCccccCCCCCEEECCC
Confidence            34444444444444332   3345666666666653 3455555556667777777775544 33222 56777777777


Q ss_pred             cCCccCCc--ccccCccCCEEeccCCcCCccCcc----------cccCCCCCCEEe
Q 025516          188 TAIEELPS--SFELLLRLWLLDLSDCKRLKSLPS----------SLCKLKSLELLS  231 (251)
Q Consensus       188 n~i~~lp~--~~~~l~~L~~L~l~~n~~~~~~p~----------~~~~l~~L~~L~  231 (251)
                      |.++.++.  .+..+++|+.|++++|++.+..|.          .+..+++|++|+
T Consensus       125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld  180 (198)
T 1ds9_A          125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred             CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence            88776654  577888888998888887666554          377888888887

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.40  E-value=2.1e-15  Score=115.77  Aligned_cols=113  Identities=23%  Similarity=0.225  Sum_probs=94.9

Q ss_pred             cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCC
Q 025516          127 QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLW  204 (251)
Q Consensus       127 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~  204 (251)
                      .+..+++|++|++++|.+.+ +| .++++++|++|++++|.+. .+|...  +++|++|++++|+++.+| .+..+++|+
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~  118 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSS
T ss_pred             HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCC
Confidence            46778899999999998554 77 7889999999999999866 566544  689999999999999987 688999999


Q ss_pred             EEeccCCcCCccCc-ccccCCCCCCEEeccCCcCCCCCCh
Q 025516          205 LLDLSDCKRLKSLP-SSLCKLKSLELLSLRGCSNLQRLPD  243 (251)
Q Consensus       205 ~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~~p~  243 (251)
                      .|++++|.+....+ ..+..+++|++|++++|++.+..|.
T Consensus       119 ~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~  158 (198)
T 1ds9_A          119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKE  158 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHT
T ss_pred             EEECCCCcCCchhHHHHHhcCCCCCEEEecCCcccccccc
Confidence            99999999765332 5789999999999999987665543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=3.7e-12  Score=95.22  Aligned_cols=104  Identities=25%  Similarity=0.212  Sum_probs=67.7

Q ss_pred             ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEeccC
Q 025516          134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSD  210 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~  210 (251)
                      .+.+++++|. ...+|..+  .++|++|++++|.+.+..+..+  +++|++|++++|+++.+|.. +.++++|+.|++++
T Consensus        11 ~~~l~~s~n~-l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKS-LASVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSC-CSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCC-cCccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            4567777665 44456554  3567777777776666555433  66777777777777766654 46677777777777


Q ss_pred             CcCCccCcccccCCCCCCEEeccCCcCCCC
Q 025516          211 CKRLKSLPSSLCKLKSLELLSLRGCSNLQR  240 (251)
Q Consensus       211 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~  240 (251)
                      |++.+..+..+..+++|++|++++|++...
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            776555555567777777777777666543

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.37  E-value=5.1e-12  Score=94.84  Aligned_cols=101  Identities=27%  Similarity=0.288  Sum_probs=63.7

Q ss_pred             cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEeccCC
Q 025516          135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDC  211 (251)
Q Consensus       135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n  211 (251)
                      +.+++++|. .+.+|..+.  ++|++|++++|.+.+..|..+  +++|++|++++|+++.+|.. +.++++|+.|++++|
T Consensus        15 ~~l~~~~n~-l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIR-LASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSC-CSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCC-CCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            566666655 455565543  567777777776655555433  66677777777777766654 356677777777777


Q ss_pred             cCCccCcccccCCCCCCEEeccCCcCC
Q 025516          212 KRLKSLPSSLCKLKSLELLSLRGCSNL  238 (251)
Q Consensus       212 ~~~~~~p~~~~~l~~L~~L~l~~n~~~  238 (251)
                      ++.+..+..+..+++|++|++++|++.
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCcc
Confidence            655444444666777777777776554

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.32  E-value=1.3e-11  Score=101.84  Aligned_cols=92  Identities=13%  Similarity=0.017  Sum_probs=58.7

Q ss_pred             CCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCC-EEeccCCcCCccCcccccCCCCCCEE
Q 025516          155 LEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLW-LLDLSDCKRLKSLPSSLCKLKSLELL  230 (251)
Q Consensus       155 l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~-~L~l~~n~~~~~~p~~~~~l~~L~~L  230 (251)
                      +++|+++++++|.+...-+..+  +.+|+++++..| ++.+++ .|.++++|+ .+++.+ .+...-+.+|.+|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            5677778887765433222223  667888888776 666665 467777787 787776 5444445677788888888


Q ss_pred             eccCCcCCCCCChhhhhc
Q 025516          231 SLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       231 ~l~~n~~~~~~p~~l~~l  248 (251)
                      ++++|++...-+..+..+
T Consensus       303 ~l~~n~i~~I~~~aF~~~  320 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNG  320 (329)
T ss_dssp             EECSSCCCEECTTTTCTT
T ss_pred             EeCCCccCccchhhhcCC
Confidence            877755544333344443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.25  E-value=5.1e-13  Score=118.58  Aligned_cols=57  Identities=25%  Similarity=0.199  Sum_probs=28.3

Q ss_pred             cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCc-ccccCCCCCCEEecc
Q 025516          177 SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLP-SSLCKLKSLELLSLR  233 (251)
Q Consensus       177 ~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~  233 (251)
                      +++|+.|.++++....+|..+..+++|+.|++++|.+..... ..+..+++|++|+++
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            345555555554444455555556666666666665332222 223445555555444

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.21  E-value=2e-12  Score=114.72  Aligned_cols=55  Identities=20%  Similarity=0.091  Sum_probs=30.2

Q ss_pred             cCCccEEEccccCCcc--CCcccccCccCCEEeccCCcCCc-cCcccccCCCCCCEEec
Q 025516          177 SGNIGQLFLSGTAIEE--LPSSFELLLRLWLLDLSDCKRLK-SLPSSLCKLKSLELLSL  232 (251)
Q Consensus       177 ~~~L~~L~l~~n~i~~--lp~~~~~l~~L~~L~l~~n~~~~-~~p~~~~~l~~L~~L~l  232 (251)
                      +++|++|++++|.++.  ++..+..+++|+.|++++| +.. .++.....+++|++|++
T Consensus       288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred             hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence            4667777777776552  2333456666777777665 221 12222234666666666

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.20  E-value=8.9e-13  Score=117.04  Aligned_cols=33  Identities=18%  Similarity=0.112  Sum_probs=16.1

Q ss_pred             cCCccEEEccccCCc--cCCcccccCccCCEEecc
Q 025516          177 SGNIGQLFLSGTAIE--ELPSSFELLLRLWLLDLS  209 (251)
Q Consensus       177 ~~~L~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~  209 (251)
                      +++|++|++++|.++  .++..+..+++|+.|+++
T Consensus       292 ~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~  326 (592)
T 3ogk_B          292 AAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR  326 (592)
T ss_dssp             GGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred             cCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence            455666666666544  122223444555555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.18  E-value=1.2e-13  Score=116.03  Aligned_cols=159  Identities=16%  Similarity=0.088  Sum_probs=90.5

Q ss_pred             CCCccEEEeecccCCCCCccccccC-----CcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc-----c--
Q 025516           61 MRKLRFLKFYSSSFNGENRCKVSHL-----QDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ-----L--  128 (251)
Q Consensus        61 l~~L~~L~l~~n~~~~~~~~~l~~l-----~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~-----l--  128 (251)
                      ++.|+.|++++|.++......+...     ..++.++|+.|.+++..+..+.  -.+.+|+.|++++|.+..     +  
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~--~~L~~L~~L~Ls~n~l~~~~~~~L~~  148 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLL--PVFLRARKLGLQLNSLGPEACKDLRD  148 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTH--HHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHH--HHHHhccHhhcCCCCCCHHHHHHHHH
Confidence            5788899999988775333333221     3344444444333221111110  025677888888887742     2  


Q ss_pred             ---cCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCC----CCcc--ccCCccEEEccccCCcc---
Q 025516          129 ---WNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKR----LPEI--SSGNIGQLFLSGTAIEE---  192 (251)
Q Consensus       129 ---~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~--~~~~L~~L~l~~n~i~~---  192 (251)
                         ....+|++|++++|.+...    ++..+...++|++|++++|.+...    ++..  ..++|++|++++|.++.   
T Consensus       149 ~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~  228 (372)
T 3un9_A          149 LLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAA  228 (372)
T ss_dssp             HHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHH
T ss_pred             HHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHH
Confidence               2345688888888765432    333445667788888888764421    1111  14577788888877762   


Q ss_pred             --CCcccccCccCCEEeccCCcCCccCcccc
Q 025516          193 --LPSSFELLLRLWLLDLSDCKRLKSLPSSL  221 (251)
Q Consensus       193 --lp~~~~~l~~L~~L~l~~n~~~~~~p~~~  221 (251)
                        ++..+...++|+.|++++|.+...-...+
T Consensus       229 ~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          229 LALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             HHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence              33445566777788887777664444433

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.12  E-value=3.5e-10  Score=93.86  Aligned_cols=97  Identities=20%  Similarity=0.082  Sum_probs=54.2

Q ss_pred             eecCCC-cccc---ccCcCCccEEEcCC-CcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCC
Q 025516          118 LEVPNS-DIEQ---LWNSVKLVILNLSG-SKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAI  190 (251)
Q Consensus       118 L~l~~n-~i~~---l~~~~~L~~L~l~~-n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i  190 (251)
                      ++.+++ ++..   ++.+.+|++|+|++ |.+.+..+..++++++|+.|++++|.+.+..|..+  +++|+.|+|++|++
T Consensus        13 v~~~~~n~l~~ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l   92 (347)
T 2ifg_A           13 LRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL   92 (347)
T ss_dssp             EECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred             EEcCCCCCCCccCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence            355554 4443   33444566777764 55444444556666666666666666555444432  56666666666666


Q ss_pred             ccCCcccccCccCCEEeccCCcCC
Q 025516          191 EELPSSFELLLRLWLLDLSDCKRL  214 (251)
Q Consensus       191 ~~lp~~~~~l~~L~~L~l~~n~~~  214 (251)
                      +.+|..+.....|+.|++.+|++.
T Consensus        93 ~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           93 ESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             ceeCHHHcccCCceEEEeeCCCcc
Confidence            666554332223666666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.07  E-value=2.8e-10  Score=93.89  Aligned_cols=57  Identities=19%  Similarity=0.138  Sum_probs=30.4

Q ss_pred             cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCC-EEeccC
Q 025516          177 SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLE-LLSLRG  234 (251)
Q Consensus       177 ~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~-~L~l~~  234 (251)
                      +++|+.+++++|+++.+|+ .|.++++|+.+++.+| +....+.+|.+|++|+ .+.+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA  283 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc
Confidence            3455566666555555554 3455555666665554 3333334555555565 555555

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.04  E-value=8.6e-12  Score=110.70  Aligned_cols=175  Identities=18%  Similarity=0.173  Sum_probs=101.6

Q ss_pred             hhcCCCccEEEeecccCCCCCccccc-cCCcceecceeEE-eeccCCCCCCCCCC-CcCCceEeecCCCcccc-----cc
Q 025516           58 FAKMRKLRFLKFYSSSFNGENRCKVS-HLQDLRFAEVKYL-HWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQ-----LW  129 (251)
Q Consensus        58 ~~~l~~L~~L~l~~n~~~~~~~~~l~-~l~~l~~l~L~~~-~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~-----l~  129 (251)
                      +..+++|+.|++++|.+++.....+. .+++|+.++++.+ .+...   .++... .+++|++|++++|.+.+     +.
T Consensus       101 ~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~---~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~  177 (594)
T 2p1m_B          101 SSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTD---GLAAIAATCRNLKELDLRESDVDDVSGHWLS  177 (594)
T ss_dssp             HHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHH---HHHHHHHHCTTCCEEECTTCEEECCCGGGGG
T ss_pred             HHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHH---HHHHHHHhCCCCCEEeCcCCccCCcchHHHH
Confidence            34677888888888776654444443 4556666666555 23221   122222 46778888888777542     22


Q ss_pred             ----CcCCccEEEcCCCc--CCc-cccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccC-----------
Q 025516          130 ----NSVKLVILNLSGSK--SLK-SLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTA-----------  189 (251)
Q Consensus       130 ----~~~~L~~L~l~~n~--~~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~-----------  189 (251)
                          .+++|++|++++|.  ... .++..+.++++|++|++++|...+.++...  +++|++|+++++.           
T Consensus       178 ~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l  257 (594)
T 2p1m_B          178 HFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGL  257 (594)
T ss_dssp             GSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHH
T ss_pred             HHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHH
Confidence                45578888887764  111 111222346778888887774333333322  5666666654331           


Q ss_pred             --------------------CccCCcccccCccCCEEeccCCcCCccC-cccccCCCCCCEEeccCC
Q 025516          190 --------------------IEELPSSFELLLRLWLLDLSDCKRLKSL-PSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       190 --------------------i~~lp~~~~~l~~L~~L~l~~n~~~~~~-p~~~~~l~~L~~L~l~~n  235 (251)
                                          ...+|..+..+++|+.|++++|.+.... +..+..+++|++|++++|
T Consensus       258 ~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~  324 (594)
T 2p1m_B          258 SVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY  324 (594)
T ss_dssp             HHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG
T ss_pred             HHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc
Confidence                                1124444446788888888888855332 233568888999988876

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.01  E-value=1.6e-09  Score=89.89  Aligned_cols=90  Identities=23%  Similarity=0.149  Sum_probs=71.6

Q ss_pred             CCCCCCCCC-CcCCceEeecCC-Ccccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCc
Q 025516          102 PLKSLPSNH-SAEKLMFLEVPN-SDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPE  174 (251)
Q Consensus       102 ~~~~~~~~~-~l~~L~~L~l~~-n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  174 (251)
                      .+..+|. + .+.+|+.|++++ |.+..     +..+.+|++|+|++|.+.+..|..|+++++|++|++++|.+.+..+.
T Consensus        20 ~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~   98 (347)
T 2ifg_A           20 ALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK   98 (347)
T ss_dssp             CCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred             CCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence            5566777 5 578899999996 98864     45678999999999987777777888999999999999987655444


Q ss_pred             cc-cCCccEEEccccCCcc
Q 025516          175 IS-SGNIGQLFLSGTAIEE  192 (251)
Q Consensus       175 ~~-~~~L~~L~l~~n~i~~  192 (251)
                      .+ ...|+.|++.+|.+..
T Consensus        99 ~~~~~~L~~l~l~~N~~~c  117 (347)
T 2ifg_A           99 TVQGLSLQELVLSGNPLHC  117 (347)
T ss_dssp             TTCSCCCCEEECCSSCCCC
T ss_pred             HcccCCceEEEeeCCCccC
Confidence            43 3349999999998873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.90  E-value=7.4e-11  Score=99.05  Aligned_cols=135  Identities=18%  Similarity=0.068  Sum_probs=100.3

Q ss_pred             cCCceEeecCCCcccc-----c-cCcCCccEEEcCCCcCCccccCcc-----ccCCCccEEecCCCCCCCC----CCcc-
Q 025516          112 AEKLMFLEVPNSDIEQ-----L-WNSVKLVILNLSGSKSLKSLPAGI-----FNLEFLTELDLSGCSKLKR----LPEI-  175 (251)
Q Consensus       112 l~~L~~L~l~~n~i~~-----l-~~~~~L~~L~l~~n~~~~~~~~~~-----~~l~~L~~L~l~~n~~~~~----~~~~-  175 (251)
                      ..+|++|++++|.+..     + ..+.+|++|++++|.+.......+     ...++|++|++++|.+...    ++.. 
T Consensus       100 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L  179 (372)
T 3un9_A          100 RHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGL  179 (372)
T ss_dssp             SSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHH
T ss_pred             CCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHH
Confidence            3689999999999853     2 235689999999998655433333     2357899999999976431    2221 


Q ss_pred             -ccCCccEEEccccCCcc-----CCcccccCccCCEEeccCCcCCcc----CcccccCCCCCCEEeccCCcCCCCCChhh
Q 025516          176 -SSGNIGQLFLSGTAIEE-----LPSSFELLLRLWLLDLSDCKRLKS----LPSSLCKLKSLELLSLRGCSNLQRLPDRL  245 (251)
Q Consensus       176 -~~~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~~~p~~l  245 (251)
                       ..++|++|++++|.++.     ++..+...++|+.|++++|.+...    ++..+..+++|++|++++|.+...-...+
T Consensus       180 ~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L  259 (372)
T 3un9_A          180 AGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVL  259 (372)
T ss_dssp             HTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred             hcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence             26789999999999873     456677888999999999998753    44556678999999999998765444444


Q ss_pred             h
Q 025516          246 A  246 (251)
Q Consensus       246 ~  246 (251)
                      +
T Consensus       260 ~  260 (372)
T 3un9_A          260 R  260 (372)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.89  E-value=1.6e-08  Score=85.65  Aligned_cols=173  Identities=10%  Similarity=0.094  Sum_probs=109.0

Q ss_pred             chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC--CcCCceEeecCCCcccccc---
Q 025516           55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH--SAEKLMFLEVPNSDIEQLW---  129 (251)
Q Consensus        55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~--~l~~L~~L~l~~n~i~~l~---  129 (251)
                      ..+|.++.+|+.+++..|.+......+|. ..+++     ...+.+ .+..++...  ++.+|+.++++.+ +..++   
T Consensus       173 ~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~-----~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~a  244 (401)
T 4fdw_A          173 EDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIE-----EVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEA  244 (401)
T ss_dssp             SSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCS-----EEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTT
T ss_pred             HHHhhCcccCCeeecCCCcceEechhhEe-ecccC-----EEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCccccc
Confidence            56777777777777777766655444554 23333     333332 233444322  5778888888764 33222   


Q ss_pred             -CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCC----CCCCc-cc--cCCccEEEccccCCccCCc-ccccC
Q 025516          130 -NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKL----KRLPE-IS--SGNIGQLFLSGTAIEELPS-SFELL  200 (251)
Q Consensus       130 -~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~----~~~~~-~~--~~~L~~L~l~~n~i~~lp~-~~~~l  200 (251)
                       ...+|+.+.+.. .........|.++++|+.+++.++...    ..++. .+  +++|+.+.+. +.++.++. .|.++
T Consensus       245 F~~~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~c  322 (401)
T 4fdw_A          245 FRESGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGGN  322 (401)
T ss_dssp             TTTCCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTTC
T ss_pred             cccCCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcCC
Confidence             125688888854 333334566778889999988877543    12332 22  7788888888 45777765 56788


Q ss_pred             ccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516          201 LRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       201 ~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      ++|+.+.+..+ +...-+.+|.++ +|+.+.+.+|....
T Consensus       323 ~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~  359 (401)
T 4fdw_A          323 RKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQ  359 (401)
T ss_dssp             CSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCB
T ss_pred             CCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcc
Confidence            89999998654 444445678888 89999998875543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.73  E-value=7.1e-09  Score=86.54  Aligned_cols=15  Identities=13%  Similarity=-0.049  Sum_probs=9.8

Q ss_pred             hhcCCCccEEEeecc
Q 025516           58 FAKMRKLRFLKFYSS   72 (251)
Q Consensus        58 ~~~l~~L~~L~l~~n   72 (251)
                      ...+++|+.|.+.+.
T Consensus       135 ~~~l~~L~~L~l~~~  149 (362)
T 2ra8_A          135 KEKFAHFEGLFWGDI  149 (362)
T ss_dssp             HHHHTTCSEEEECCC
T ss_pred             hhhcchhhheeecCc
Confidence            445677777777554

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.64  E-value=9.3e-09  Score=85.83  Aligned_cols=129  Identities=16%  Similarity=0.094  Sum_probs=87.6

Q ss_pred             CcCCceEeecCCCcccccc--CcCCccEEEcCCCcCCccccCccc--cCCCccEEecCC--CCCCCC-----CC----cc
Q 025516          111 SAEKLMFLEVPNSDIEQLW--NSVKLVILNLSGSKSLKSLPAGIF--NLEFLTELDLSG--CSKLKR-----LP----EI  175 (251)
Q Consensus       111 ~l~~L~~L~l~~n~i~~l~--~~~~L~~L~l~~n~~~~~~~~~~~--~l~~L~~L~l~~--n~~~~~-----~~----~~  175 (251)
                      .+++|+.|.+.++.-..++  ..++|+.|++..|.+.......+.  .+++|++|+++.  +...+.     +.    ..
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~  249 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD  249 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred             cCCCCcEEEEeCCCCceeccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence            4688999999877311222  367899999988875544333343  689999999853  111111     11    12


Q ss_pred             ccCCccEEEccccCCcc-CCccc---ccCccCCEEeccCCcCCcc----CcccccCCCCCCEEeccCCcCCC
Q 025516          176 SSGNIGQLFLSGTAIEE-LPSSF---ELLLRLWLLDLSDCKRLKS----LPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       176 ~~~~L~~L~l~~n~i~~-lp~~~---~~l~~L~~L~l~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      .+++|+.|++.+|.+.. .+..+   ..+++|+.|+|+.|.+...    ++..+..+++|+.|++++|.+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d  321 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD  321 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence            27899999999998872 22222   3688999999999987654    34445678999999999986543

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=98.61  E-value=6.7e-07  Score=75.66  Aligned_cols=169  Identities=8%  Similarity=0.081  Sum_probs=85.6

Q ss_pred             chhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCCceEeecCCCccccccC--
Q 025516           55 PNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEKLMFLEVPNSDIEQLWN--  130 (251)
Q Consensus        55 ~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~L~~L~l~~n~i~~l~~--  130 (251)
                      ..+|.++ +|+.+.+..+ +......+|... .|     ....+.+ .+..++.. + ++.+|+.+++++|++..++.  
T Consensus       129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L-----~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~a  199 (401)
T 4fdw_A          129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TV-----QEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPAST  199 (401)
T ss_dssp             TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CC-----CEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTT
T ss_pred             HhhcccC-CccEEEeCCC-ccEECHHhcCCC-Cc-----eEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhh
Confidence            4566664 6777777654 443334444432 22     2222222 23333332 2 46667777776666654332  


Q ss_pred             --cCCccEEEcCCCcCCccccCccccCCCccEEecCCCC--------------------CCCCCCc-cc--cCCccEEEc
Q 025516          131 --SVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCS--------------------KLKRLPE-IS--SGNIGQLFL  185 (251)
Q Consensus       131 --~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~--------------------~~~~~~~-~~--~~~L~~L~l  185 (251)
                        ..+|+.+.+..+ ........|.++++|+.+++..+-                    ....++. .+  +++|+.+.+
T Consensus       200 F~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l  278 (401)
T 4fdw_A          200 FVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTT  278 (401)
T ss_dssp             TTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEE
T ss_pred             EeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEe
Confidence              345666666532 222223344455555655554431                    0122221 11  556777777


Q ss_pred             cccCCc-----cCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccC
Q 025516          186 SGTAIE-----ELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG  234 (251)
Q Consensus       186 ~~n~i~-----~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  234 (251)
                      .++.+.     .++. .|.++++|+.+.+.+ .+...-..+|.+|++|+.+.+..
T Consensus       279 ~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~  332 (401)
T 4fdw_A          279 YGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPA  332 (401)
T ss_dssp             ESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECT
T ss_pred             CCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECc
Confidence            666554     3443 456677777777763 33333345667777777777754

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.54  E-value=2.3e-08  Score=75.46  Aligned_cols=110  Identities=14%  Similarity=0.099  Sum_probs=68.4

Q ss_pred             ccCcCCccEEEcCCC-cCCcc----ccCccccCCCccEEecCCCCCCCC----CCccc--cCCccEEEccccCCcc----
Q 025516          128 LWNSVKLVILNLSGS-KSLKS----LPAGIFNLEFLTELDLSGCSKLKR----LPEIS--SGNIGQLFLSGTAIEE----  192 (251)
Q Consensus       128 l~~~~~L~~L~l~~n-~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~--~~~L~~L~l~~n~i~~----  192 (251)
                      +...++|++|+|++| .+...    +...+...++|++|++++|.+...    +....  .++|++|++++|.|+.    
T Consensus        32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~  111 (185)
T 1io0_A           32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL  111 (185)
T ss_dssp             HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred             HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence            344556667777666 43322    223344456677777777754321    11111  4567788888887772    


Q ss_pred             -CCcccccCccCCEEec--cCCcCCcc----CcccccCCCCCCEEeccCCcC
Q 025516          193 -LPSSFELLLRLWLLDL--SDCKRLKS----LPSSLCKLKSLELLSLRGCSN  237 (251)
Q Consensus       193 -lp~~~~~l~~L~~L~l--~~n~~~~~----~p~~~~~l~~L~~L~l~~n~~  237 (251)
                       +...+...+.|+.|++  ++|.+...    +...+...++|++|++++|.+
T Consensus       112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence             4556777788888888  77887643    334556678888898888754

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.43  E-value=5.6e-08  Score=77.44  Aligned_cols=77  Identities=21%  Similarity=0.203  Sum_probs=42.8

Q ss_pred             cCCCccEEecCCCCCCC--CCCccc--cCCccEEEccccCCccCCcccccCc--cCCEEeccCCcCCccCc-------cc
Q 025516          154 NLEFLTELDLSGCSKLK--RLPEIS--SGNIGQLFLSGTAIEELPSSFELLL--RLWLLDLSDCKRLKSLP-------SS  220 (251)
Q Consensus       154 ~l~~L~~L~l~~n~~~~--~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~--~L~~L~l~~n~~~~~~p-------~~  220 (251)
                      ++++|++|++++|.+.+  .++...  +++|+.|+|++|.++.+. .+..++  +|+.|++++|++.+.+|       ..
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            34555555555555444  222221  556666666666666542 233333  67777777777665554       23


Q ss_pred             ccCCCCCCEEe
Q 025516          221 LCKLKSLELLS  231 (251)
Q Consensus       221 ~~~l~~L~~L~  231 (251)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            56677777765

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.36  E-value=2.1e-07  Score=69.21  Aligned_cols=81  Identities=12%  Similarity=0.094  Sum_probs=44.2

Q ss_pred             CCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-------cCCccEEEccccC-Ccc-CCcccccCcc
Q 025516          132 VKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-------SGNIGQLFLSGTA-IEE-LPSSFELLLR  202 (251)
Q Consensus       132 ~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-------~~~L~~L~l~~n~-i~~-lp~~~~~l~~  202 (251)
                      ..|+.||+++|.+....-..+.++++|++|++++|...++..-..       .++|++|++++|. |++ --..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            357788888777554444456677777777777776544322110       1245555555553 441 0112344556


Q ss_pred             CCEEeccCCc
Q 025516          203 LWLLDLSDCK  212 (251)
Q Consensus       203 L~~L~l~~n~  212 (251)
                      |+.|++++|+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666655

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.30  E-value=2.1e-07  Score=70.14  Aligned_cols=104  Identities=13%  Similarity=0.095  Sum_probs=75.7

Q ss_pred             CcCCceEeecCCC-ccc---------cccCcCCccEEEcCCCcCCcc----ccCccccCCCccEEecCCCCCCCC----C
Q 025516          111 SAEKLMFLEVPNS-DIE---------QLWNSVKLVILNLSGSKSLKS----LPAGIFNLEFLTELDLSGCSKLKR----L  172 (251)
Q Consensus       111 ~l~~L~~L~l~~n-~i~---------~l~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~~L~l~~n~~~~~----~  172 (251)
                      ..++|++|++++| .+.         .+...++|++|+|++|.+...    +...+...++|++|++++|.+...    +
T Consensus        34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l  113 (185)
T 1io0_A           34 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL  113 (185)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHH
Confidence            3577888888888 774         245567899999999885543    234444567899999999976532    1


Q ss_pred             Cccc--cCCccEEEc--cccCCcc-----CCcccccCccCCEEeccCCcCC
Q 025516          173 PEIS--SGNIGQLFL--SGTAIEE-----LPSSFELLLRLWLLDLSDCKRL  214 (251)
Q Consensus       173 ~~~~--~~~L~~L~l--~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~~  214 (251)
                      ....  .+.|++|++  ++|.++.     +...+...+.|+.|++++|.+.
T Consensus       114 ~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          114 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            2211  568999999  8899872     5556677789999999999864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.19  E-value=1.7e-06  Score=68.84  Aligned_cols=95  Identities=21%  Similarity=0.214  Sum_probs=69.5

Q ss_pred             CCceE--eecCCCccccc--------cCcCCccEEEcCCCcCCc--cccCccccCCCccEEecCCCCCCCCCCccccC--
Q 025516          113 EKLMF--LEVPNSDIEQL--------WNSVKLVILNLSGSKSLK--SLPAGIFNLEFLTELDLSGCSKLKRLPEISSG--  178 (251)
Q Consensus       113 ~~L~~--L~l~~n~i~~l--------~~~~~L~~L~l~~n~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~--  178 (251)
                      +.|..  ++++.|..+.+        ..+++|+.|+|++|.+.+  .+|..++.+++|+.|++++|.+.+.-.-..+.  
T Consensus       141 p~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l  220 (267)
T 3rw6_A          141 PDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL  220 (267)
T ss_dssp             HHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS
T ss_pred             cchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC
Confidence            34444  56777755422        246789999999998776  45666778999999999999877641111133  


Q ss_pred             CccEEEccccCCc-cCCc-------ccccCccCCEEe
Q 025516          179 NIGQLFLSGTAIE-ELPS-------SFELLLRLWLLD  207 (251)
Q Consensus       179 ~L~~L~l~~n~i~-~lp~-------~~~~l~~L~~L~  207 (251)
                      +|++|++++|.+. .+|.       .+..+|+|+.||
T Consensus       221 ~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD  257 (267)
T 3rw6_A          221 KLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD  257 (267)
T ss_dssp             CCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred             CcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence            8999999999987 4552       367899999997

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.81  E-value=3.9e-06  Score=62.29  Aligned_cols=38  Identities=13%  Similarity=0.093  Sum_probs=18.8

Q ss_pred             CccEEEcCCCc-CCccccCccccCCCccEEecCCCCCCC
Q 025516          133 KLVILNLSGSK-SLKSLPAGIFNLEFLTELDLSGCSKLK  170 (251)
Q Consensus       133 ~L~~L~l~~n~-~~~~~~~~~~~l~~L~~L~l~~n~~~~  170 (251)
                      +|++|++++|. ++...-..+..+++|++|++++|...+
T Consensus       115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c~~It  153 (176)
T 3e4g_A          115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVK  153 (176)
T ss_dssp             HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESCTTCC
T ss_pred             CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCCCCCC
Confidence            46666666654 222222334455556666666654333

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=97.34  E-value=0.0023  Score=53.63  Aligned_cols=80  Identities=19%  Similarity=0.109  Sum_probs=50.9

Q ss_pred             cccCCCccEEecCCCCCCCCCCcc-c--cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCC
Q 025516          152 IFNLEFLTELDLSGCSKLKRLPEI-S--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSL  227 (251)
Q Consensus       152 ~~~l~~L~~L~l~~n~~~~~~~~~-~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L  227 (251)
                      +.++.+|+.+.+..+  .+.++.. +  +.+|+.+++.. .++.+.. +|.++.+|+.+.+..+ +...-..+|.+|++|
T Consensus       293 F~~~~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L  368 (394)
T 4fs7_A          293 FYGCSSLTEVKLLDS--VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINL  368 (394)
T ss_dssp             TTTCTTCCEEEECTT--CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTC
T ss_pred             ccccccccccccccc--cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCC
Confidence            334566666666543  2333332 2  56788888754 3666654 5677888888888654 344445678888888


Q ss_pred             CEEeccCC
Q 025516          228 ELLSLRGC  235 (251)
Q Consensus       228 ~~L~l~~n  235 (251)
                      +.+.+..+
T Consensus       369 ~~i~lp~~  376 (394)
T 4fs7_A          369 KKVELPKR  376 (394)
T ss_dssp             CEEEEEGG
T ss_pred             CEEEECCC
Confidence            88887653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.32  E-value=0.00064  Score=47.79  Aligned_cols=55  Identities=20%  Similarity=0.228  Sum_probs=40.5

Q ss_pred             EEecCCCCCC-CCCCccccCCccEEEccccCCccCCcc-cccCccCCEEeccCCcCC
Q 025516          160 ELDLSGCSKL-KRLPEISSGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDCKRL  214 (251)
Q Consensus       160 ~L~l~~n~~~-~~~~~~~~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~  214 (251)
                      .++.+++.+. ..+|.....+|++|+|++|+|+.+|.. +..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5666666543 267766667888888888888888764 567888888888888753

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=97.32  E-value=0.007  Score=50.64  Aligned_cols=21  Identities=14%  Similarity=0.300  Sum_probs=16.2

Q ss_pred             CCchhhhcCCCccEEEeeccc
Q 025516           53 LNPNTFAKMRKLRFLKFYSSS   73 (251)
Q Consensus        53 ~~~~~~~~l~~L~~L~l~~n~   73 (251)
                      +...+|.++.+|+.+.+..+.
T Consensus        78 Ig~~AF~~C~~L~~i~~~~n~   98 (394)
T 4gt6_A           78 IGSNAFYNCTSLKRVTIQDNK   98 (394)
T ss_dssp             ECTTTTTTCTTCCEEEEGGGC
T ss_pred             EhHHHhhCCccCceEeecCCC
Confidence            336788899999999887653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.27  E-value=0.0006  Score=47.95  Aligned_cols=56  Identities=18%  Similarity=0.100  Sum_probs=47.2

Q ss_pred             cEEEccccCCc--cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCC
Q 025516          181 GQLFLSGTAIE--ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL  238 (251)
Q Consensus       181 ~~L~l~~n~i~--~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~  238 (251)
                      ..++.+++.++  .+|..+.  ++|+.|+|++|++...-+..+..+++|++|++++|+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888999998  8997653  57999999999987766678899999999999998764

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.09  E-value=0.00029  Score=53.19  Aligned_cols=105  Identities=13%  Similarity=0.093  Sum_probs=56.6

Q ss_pred             cCCccEEEcCCC-cCCc----cccCccccCCCccEEecCCCCCCCCCC----ccc--cCCccEEEccccCCc-----cCC
Q 025516          131 SVKLVILNLSGS-KSLK----SLPAGIFNLEFLTELDLSGCSKLKRLP----EIS--SGNIGQLFLSGTAIE-----ELP  194 (251)
Q Consensus       131 ~~~L~~L~l~~n-~~~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~--~~~L~~L~l~~n~i~-----~lp  194 (251)
                      -..|+.|+|++| .+..    .+...+..-+.|+.|++++|.+...-.    ...  -+.|++|+|++|.|+     .+.
T Consensus        40 n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala  119 (197)
T 1pgv_A           40 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL  119 (197)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHH
Confidence            345666666653 3221    122333334456666666665432111    111  356777777777776     244


Q ss_pred             cccccCccCCEEeccCCc---CCc----cCcccccCCCCCCEEeccCC
Q 025516          195 SSFELLLRLWLLDLSDCK---RLK----SLPSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       195 ~~~~~l~~L~~L~l~~n~---~~~----~~p~~~~~l~~L~~L~l~~n  235 (251)
                      +.+..-+.|+.|+|++|.   +..    .+...+..-+.|+.|+++.|
T Consensus       120 ~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          120 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            455555668888887543   221    23345566677888888764

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.99  E-value=0.0039  Score=52.19  Aligned_cols=158  Identities=9%  Similarity=0.074  Sum_probs=97.3

Q ss_pred             cCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCC-CC-CcCCceEeecCCCccc--cccCcCCcc
Q 025516           60 KMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPS-NH-SAEKLMFLEVPNSDIE--QLWNSVKLV  135 (251)
Q Consensus        60 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~-~~-~l~~L~~L~l~~n~i~--~l~~~~~L~  135 (251)
                      ...+|+.+.+... .......++..+..++...+.     .+ ...++. .+ ....++.+....+.+.  .+....+|+
T Consensus       228 ~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~-----~~-~~~i~~~~F~~~~~l~~~~~~~~~i~~~~F~~~~~L~  300 (394)
T 4fs7_A          228 SKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQ-----NN-KLRIGGSLFYNCSGLKKVIYGSVIVPEKTFYGCSSLT  300 (394)
T ss_dssp             TTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEEC-----CT-TCEECSCTTTTCTTCCEEEECSSEECTTTTTTCTTCC
T ss_pred             ccCCCceEEECCC-ceecccccccccccceeEEcC-----CC-cceeeccccccccccceeccCceeecccccccccccc
Confidence            4567787777543 222223344444444433332     21 111211 11 4566666666665554  355677888


Q ss_pred             EEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc-c--cCCccEEEccccCCccCCc-ccccCccCCEEeccCC
Q 025516          136 ILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI-S--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDC  211 (251)
Q Consensus       136 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n  211 (251)
                      .+.+..+ ........+.++.+|+.+++..+  .+.++.. +  +.+|+.+.+..+ ++.++. +|.++++|+.+++..+
T Consensus       301 ~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~  376 (394)
T 4fs7_A          301 EVKLLDS-VKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR  376 (394)
T ss_dssp             EEEECTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred             ccccccc-cceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence            8888754 23333455778899999999754  3444432 2  688999999766 776765 6789999999999754


Q ss_pred             cCCccCcccccCCCCCCEE
Q 025516          212 KRLKSLPSSLCKLKSLELL  230 (251)
Q Consensus       212 ~~~~~~p~~~~~l~~L~~L  230 (251)
                        ...+..++.++++|+.+
T Consensus       377 --~~~~~~~F~~c~~L~~I  393 (394)
T 4fs7_A          377 --LEQYRYDFEDTTKFKWI  393 (394)
T ss_dssp             --GGGGGGGBCTTCEEEEE
T ss_pred             --CEEhhheecCCCCCcEE
Confidence              23445678889888875

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.92  E-value=0.0096  Score=49.81  Aligned_cols=116  Identities=12%  Similarity=0.176  Sum_probs=51.9

Q ss_pred             cCCceEeecCCCccc----cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCcc-c--cCCccEEE
Q 025516          112 AEKLMFLEVPNSDIE----QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEI-S--SGNIGQLF  184 (251)
Q Consensus       112 l~~L~~L~l~~n~i~----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~-~--~~~L~~L~  184 (251)
                      +..|+.+.++.+...    .+.++..|+.+.+.. .........|.++.+|+.+++..+  .+.++.. +  +.+|+++.
T Consensus       264 c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~C~~L~~i~  340 (394)
T 4gt6_A          264 CAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG--ITQILDDAFAGCEQLERIA  340 (394)
T ss_dssp             CSSCCEEECCTTCCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEE
T ss_pred             cccccEEecccccceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc--ccEehHhHhhCCCCCCEEE
Confidence            455555555443221    233445566666543 212222233445666666666543  2223221 1  45666666


Q ss_pred             ccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccC
Q 025516          185 LSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG  234 (251)
Q Consensus       185 l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  234 (251)
                      +.. .++.+.. +|.++++|+.+++.++....   ..+..+.+|+.+.+..
T Consensus       341 ip~-sv~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~  387 (394)
T 4gt6_A          341 IPS-SVTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAP  387 (394)
T ss_dssp             ECT-TCCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-------
T ss_pred             ECc-ccCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCC
Confidence            643 2445543 45566666666665543211   2345555666655544

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.66  E-value=0.078  Score=43.84  Aligned_cols=57  Identities=19%  Similarity=0.208  Sum_probs=36.6

Q ss_pred             cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccC
Q 025516          177 SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG  234 (251)
Q Consensus       177 ~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  234 (251)
                      +.+|+.+.+..+.++.+++ .|.++.+|+.+.+..+ +...-..+|.+|++|+.+.+..
T Consensus       285 c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          285 CSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             CTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            5667777777777766654 4567777777777543 2333345677777777776643

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.65  E-value=0.0011  Score=50.01  Aligned_cols=82  Identities=20%  Similarity=0.150  Sum_probs=60.6

Q ss_pred             cCCCccEEecCCCCCCCCCC-----cc--ccCCccEEEccccCCc-----cCCcccccCccCCEEeccCCcCCcc----C
Q 025516          154 NLEFLTELDLSGCSKLKRLP-----EI--SSGNIGQLFLSGTAIE-----ELPSSFELLLRLWLLDLSDCKRLKS----L  217 (251)
Q Consensus       154 ~l~~L~~L~l~~n~~~~~~~-----~~--~~~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~~~~----~  217 (251)
                      +-+.|++|++++|..+++..     +.  .-+.|+.|+|++|+|.     .+.+.+..-+.|+.|+|++|.+...    +
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            45689999999863333211     11  1468999999999998     3556677778999999999998743    3


Q ss_pred             cccccCCCCCCEEeccCC
Q 025516          218 PSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       218 p~~~~~l~~L~~L~l~~n  235 (251)
                      ..++..-+.|+.|++++|
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence            345666778999999875

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.28  E-value=0.033  Score=46.12  Aligned_cols=56  Identities=11%  Similarity=0.054  Sum_probs=26.4

Q ss_pred             cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEecc
Q 025516          177 SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLR  233 (251)
Q Consensus       177 ~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~  233 (251)
                      +..|+.+.+.. .+..++. .+.++++|+.+.+.++.+...-..+|.+|.+|+.+.+.
T Consensus       262 ~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          262 CTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             CTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             eehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            34455555432 2333332 34455555555555444333333455555555555554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	251
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-05
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.003

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 6/78 (7%)

Query: 152 IFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDC 211
                 L EL++S   KL  LP      + +L  S   + E+P   EL   L  L +   
Sbjct: 280 CDLPPSLEELNVSNN-KLIELPA-LPPRLERLIASFNHLAEVP---ELPQNLKQLHVEYN 334

Query: 212 KRLKSLPSSLCKLKSLEL 229
             L+  P     ++ L +
Sbjct: 335 P-LREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 3e-05
 Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 6/109 (5%)

Query: 97  HWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSVKLVILNLSGSKSLKSLPAGIFNLE 156
                 + S  S             N           L  LN+S +K L  LPA    LE
Sbjct: 249 LDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRLE 307

Query: 157 FLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWL 205
               L  S    L  +PE    N+ QL +    + E P   E +  L +
Sbjct: 308 ---RLIASFN-HLAEVPE-LPQNLKQLHVEYNPLREFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.3 bits (82), Expect = 0.003
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 158 LTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSL 217
             EL+L+    L  LPE+   ++  L  S  ++ ELP   + L  L + + +  K L  L
Sbjct: 40  AHELELNNL-GLSSLPELP-PHLESLVASCNSLTELPELPQSLKSLLVDNNN-LKALSDL 96

Query: 218 PSSLC 222
           P  L 
Sbjct: 97  PPLLE 101

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 36.0 bits (81), Expect = 0.003
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 179 NIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNL 238
           ++ +L +S   + ELP+      RL  L  S    L  +P      ++L+ L +     L
Sbjct: 285 SLEELNVSNNKLIELPALPP---RLERLIASFN-HLAEVPEL---PQNLKQLHVEYN-PL 336

Query: 239 QRLPDRLAS 247
           +  PD   S
Sbjct: 337 REFPDIPES 345

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.8 bits (94), Expect = 9e-05
 Identities = 37/152 (24%), Positives = 59/152 (38%), Gaps = 9/152 (5%)

Query: 94  KYLHWHGYPLKSLPSNHSAEKLMFLEVPN---SDIEQLWNSVKLVILNLSGSKSLKSLPA 150
             L  +G  LK + +  S   L  L++ N   S++  L    KL  L L  ++     P 
Sbjct: 222 DELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP- 280

Query: 151 GIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSD 210
            +  L  LT L+L+        P  +  N+  L L    I ++      L +L  L  ++
Sbjct: 281 -LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFAN 338

Query: 211 CKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242
            K   S  SSL  L ++  LS      +  L 
Sbjct: 339 NKV--SDVSSLANLTNINWLSAGHN-QISDLT 367

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 35.9 bits (81), Expect = 0.003
 Identities = 10/51 (19%), Positives = 17/51 (33%), Gaps = 1/51 (1%)

Query: 192 ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP 242
            LP     L  L  L++S       +P     L+  ++ +      L   P
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	251
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.8
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.79
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.78
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.71
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.69
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.65
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.61
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.57
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.55
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.55
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.48
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.46
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.45
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.43
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.32
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.31
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.27
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.14
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.13
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.08
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.05
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.03
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.0
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.0
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.38
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.27
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.95
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.78
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.43
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.35
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.18

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=2.2e-22  Score=163.67  Aligned_cols=205  Identities=17%  Similarity=0.205  Sum_probs=157.8

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeec-ccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcC
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYS-SSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAE  113 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~  113 (251)
                      .+|..+.+...........|..++++++|++|++++ |.+.+..|..+..+.+|+.++|++|.+.+.    .+..+ .+.
T Consensus        50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~----~~~~~~~~~  125 (313)
T d1ogqa_          50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA----IPDFLSQIK  125 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE----CCGGGGGCT
T ss_pred             EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc----ccccccchh
Confidence            357777776665554333477999999999999986 789988899999999999999999988763    22222 577


Q ss_pred             CceEeecCCCccc-----cccCcCCccEEEcCCCcCCccccCccccCCCc-cEEecCCCCCCCC----------------
Q 025516          114 KLMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFL-TELDLSGCSKLKR----------------  171 (251)
Q Consensus       114 ~L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L-~~L~l~~n~~~~~----------------  171 (251)
                      .|+.+++++|.+.     .+..++.++++++++|.+.+.+|..++.+..+ +.++++.|++.+.                
T Consensus       126 ~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~  205 (313)
T d1ogqa_         126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS  205 (313)
T ss_dssp             TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC
T ss_pred             hhcccccccccccccCchhhccCcccceeecccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            8888888888764     46677788888888888777788777776664 6677766654322                


Q ss_pred             -------CCccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          172 -------LPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       172 -------~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                             .|...  ++.++.+++++|.+...+..++.+++|+.|++++|++.+.+|..++++++|++|++++|++.|.+|
T Consensus       206 ~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP  285 (313)
T d1ogqa_         206 RNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP  285 (313)
T ss_dssp             SSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCC
Confidence                   22221  567888888888887666677888899999999999888899989999999999999998888888


Q ss_pred             hh
Q 025516          243 DR  244 (251)
Q Consensus       243 ~~  244 (251)
                      +.
T Consensus       286 ~~  287 (313)
T d1ogqa_         286 QG  287 (313)
T ss_dssp             CS
T ss_pred             Cc
Confidence            63

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.1e-20  Score=145.81  Aligned_cols=172  Identities=17%  Similarity=0.149  Sum_probs=141.6

Q ss_pred             CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc----ccCcCCccEE
Q 025516           62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ----LWNSVKLVIL  137 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~----l~~~~~L~~L  137 (251)
                      +++++|++++|.++...+.+|..+.+|+.++|++|.+     +.++....+++|++|++++|++..    +..+++|++|
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l-----~~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L  105 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL-----TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVL  105 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCC-----CEEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhccccccccccccccc-----cccccccccccccccccccccccccccccccccccccc
Confidence            5899999999999887777777777766666655554     455555578999999999999874    4567799999


Q ss_pred             EcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCC
Q 025516          138 NLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRL  214 (251)
Q Consensus       138 ~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~  214 (251)
                      ++++|...+..+..+..+.++++|++++|.+....+...  ++.++.+++++|+++.+|. .+..+++|+.|+|++|++.
T Consensus       106 ~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~  185 (266)
T d1p9ag_         106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY  185 (266)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             cccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccCCCc
Confidence            999998776667777789999999999998765555443  7899999999999998875 5788999999999999965


Q ss_pred             ccCcccccCCCCCCEEeccCCcCCC
Q 025516          215 KSLPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       215 ~~~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                       .+|..+..+++|+.|++++|+...
T Consensus       186 -~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         186 -TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             -CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             -ccChhHCCCCCCCEEEecCCCCCC
Confidence             889889999999999999987653

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=1.8e-20  Score=152.18  Aligned_cols=201  Identities=18%  Similarity=0.166  Sum_probs=152.2

Q ss_pred             CCceEEEEeec-CCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-Cc
Q 025516           35 TEKIEGICLDL-SKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SA  112 (251)
Q Consensus        35 ~~~~~~~~l~~-~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l  112 (251)
                      ...++.+.+.. +++.  ...|..|+++++|++|++++|.+.+..+..+..+..++.+++..|.+.+    .+|..+ .+
T Consensus        75 L~~L~~L~Ls~~N~l~--g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~----~~p~~l~~l  148 (313)
T d1ogqa_          75 LPYLNFLYIGGINNLV--GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG----TLPPSISSL  148 (313)
T ss_dssp             CTTCSEEEEEEETTEE--SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEES----CCCGGGGGC
T ss_pred             Cccccccccccccccc--cccccccccccccchhhhccccccccccccccchhhhcccccccccccc----cCchhhccC
Confidence            44555666653 3332  2337789999999999999999988777777777777777777777665    444444 56


Q ss_pred             CCceEeecCCCccc-----cccCcC------------------------CccEEEcCCCcCCccccCccccCCCccEEec
Q 025516          113 EKLMFLEVPNSDIE-----QLWNSV------------------------KLVILNLSGSKSLKSLPAGIFNLEFLTELDL  163 (251)
Q Consensus       113 ~~L~~L~l~~n~i~-----~l~~~~------------------------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l  163 (251)
                      +.++.+++++|.+.     .+..+.                        ....++++.+...+..|..++.+++++.+++
T Consensus       149 ~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~  228 (313)
T d1ogqa_         149 PNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHL  228 (313)
T ss_dssp             TTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEEC
T ss_pred             cccceeeccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            77777777777664     122222                        2334555555544555666677888999999


Q ss_pred             CCCCCCCCCCccc-cCCccEEEccccCCc-cCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCC
Q 025516          164 SGCSKLKRLPEIS-SGNIGQLFLSGTAIE-ELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRL  241 (251)
Q Consensus       164 ~~n~~~~~~~~~~-~~~L~~L~l~~n~i~-~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~  241 (251)
                      ++|.+.+..+... +++|+.|++++|+++ .+|+.++++++|+.|+|++|++.+.+|. ++++++|+.+++++|+.+...
T Consensus       229 ~~~~l~~~~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~l~g~  307 (313)
T d1ogqa_         229 AKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             CSSEECCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSEEEST
T ss_pred             ccccccccccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCccccCC
Confidence            9998887777654 789999999999999 8999999999999999999999989985 688999999999999876655


Q ss_pred             C
Q 025516          242 P  242 (251)
Q Consensus       242 p  242 (251)
                      |
T Consensus       308 p  308 (313)
T d1ogqa_         308 P  308 (313)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=4.4e-19  Score=142.04  Aligned_cols=200  Identities=19%  Similarity=0.169  Sum_probs=150.6

Q ss_pred             ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCC
Q 025516           37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEK  114 (251)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~  114 (251)
                      .++.+.++.+.++.+  .+.+|.++++|++|++++|.+....+..+.....+..+..    ...+.+..++.. + ++++
T Consensus        33 ~~~~L~Ls~N~i~~i--~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~----~~~~~~~~l~~~~~~~l~~  106 (284)
T d1ozna_          33 ASQRIFLHGNRISHV--PAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL----SDNAQLRSVDPATFHGLGR  106 (284)
T ss_dssp             TCSEEECTTSCCCEE--CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC----CSCTTCCCCCTTTTTTCTT
T ss_pred             CCCEEECcCCcCCCC--CHHHhhcccccccccccccccccccccccccccccccccc----ccccccccccchhhccccc
Confidence            455666666655544  4678889999999999998887766655555544432221    122333344332 3 6899


Q ss_pred             ceEeecCCCccccc-----cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccc
Q 025516          115 LMFLEVPNSDIEQL-----WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSG  187 (251)
Q Consensus       115 L~~L~l~~n~i~~l-----~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~  187 (251)
                      |++|++++|.+..+     ....+|+.+++++|.+.+..+..+..+++|++|++++|.+.+..+..+  +++|+.+++++
T Consensus       107 L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~  186 (284)
T d1ozna_         107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (284)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhh
Confidence            99999999988643     346689999999998665556677788999999999998765555444  78999999999


Q ss_pred             cCCccC-CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          188 TAIEEL-PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       188 n~i~~l-p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      |+++.+ |..+.++++|+.|++++|.+.+..|..++.+++|++|++++|+.....+
T Consensus       187 N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             ccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            999865 6678999999999999999988888889999999999999988765543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.4e-18  Score=137.79  Aligned_cols=180  Identities=21%  Similarity=0.180  Sum_probs=141.1

Q ss_pred             cCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCCceEeecCCCccccc---cCcCCc
Q 025516           60 KMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEKLMFLEVPNSDIEQL---WNSVKL  134 (251)
Q Consensus        60 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~L~~L~l~~n~i~~l---~~~~~L  134 (251)
                      +...+..++.+++.++.. |..+  ++.     ++.++++++.++.++.. + ++++|++|++++|+|+.+   ..+++|
T Consensus         8 ~~~~~~~v~C~~~~L~~i-P~~l--p~~-----l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L   79 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLTAL-PPDL--PKD-----TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVL   79 (266)
T ss_dssp             CSTTCCEEECTTSCCSSC-CSCC--CTT-----CCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTC
T ss_pred             ccCCCeEEEccCCCCCee-CcCc--CcC-----CCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccc
Confidence            455666678888877753 3333  233     44555555555566542 3 689999999999999765   467899


Q ss_pred             cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcc-cccCccCCEEeccCC
Q 025516          135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSS-FELLLRLWLLDLSDC  211 (251)
Q Consensus       135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~-~~~l~~L~~L~l~~n  211 (251)
                      ++|++++|++ ...+..+.++++|+.|++++|...+..+...  +.++++|++++|.++.+|.. +..+++++.+++++|
T Consensus        80 ~~L~Ls~N~l-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N  158 (266)
T d1p9ag_          80 GTLDLSHNQL-QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN  158 (266)
T ss_dssp             CEEECCSSCC-SSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred             cccccccccc-cccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccc
Confidence            9999999974 4567778899999999999998776555443  78999999999999988764 568999999999999


Q ss_pred             cCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          212 KRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       212 ~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      ++.+..+..++.+++|++|++++|.+. .+|+++..+.
T Consensus       159 ~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~  195 (266)
T d1p9ag_         159 NLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH  195 (266)
T ss_dssp             CCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTC
T ss_pred             cccccCccccccccccceeecccCCCc-ccChhHCCCC
Confidence            988877788999999999999998755 8998876654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.78  E-value=3.6e-18  Score=137.88  Aligned_cols=206  Identities=16%  Similarity=0.122  Sum_probs=139.9

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeecc---------------
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHG---------------  100 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~---------------  100 (251)
                      ..++.+.+..++++.+  .+.+|.++++|+.|++++|.+....+..|..+..++.+++++|.+..               
T Consensus        31 ~~l~~L~Ls~N~i~~l--~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~  108 (305)
T d1xkua_          31 PDTALLDLQNNKITEI--KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVH  108 (305)
T ss_dssp             TTCCEEECCSSCCCCB--CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECC
T ss_pred             CCCCEEECcCCcCCCc--ChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhcc
Confidence            4566666666655443  35678888899999998888887777777777777766665554431               


Q ss_pred             -CCCCCCCC---------------------------CC-CcCCceEeecCCCcccccc--CcCCccEEEcCCCcCCcccc
Q 025516          101 -YPLKSLPS---------------------------NH-SAEKLMFLEVPNSDIEQLW--NSVKLVILNLSGSKSLKSLP  149 (251)
Q Consensus       101 -~~~~~~~~---------------------------~~-~l~~L~~L~l~~n~i~~l~--~~~~L~~L~l~~n~~~~~~~  149 (251)
                       +.+..++.                           .+ .+++|+.+++++|++..++  ..++|+.|++++|......+
T Consensus       109 ~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~~~~~  188 (305)
T d1xkua_         109 ENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDA  188 (305)
T ss_dssp             SSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECT
T ss_pred             ccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCCCCCh
Confidence             11111110                           00 2345666666666665543  24578888888877666777


Q ss_pred             CccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcc------cc
Q 025516          150 AGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPS------SL  221 (251)
Q Consensus       150 ~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~------~~  221 (251)
                      ..+.+++.+++|++++|.+.+..+..+  +++|++|++++|+++.+|..+..+++|+.|++++|++...-..      ..
T Consensus       189 ~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~  268 (305)
T d1xkua_         189 ASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYN  268 (305)
T ss_dssp             GGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCC
T ss_pred             hHhhccccccccccccccccccccccccccccceeeecccccccccccccccccCCCEEECCCCccCccChhhccCcchh
Confidence            777788888888888887666555443  7889999999998888888888889999999998886543222      23


Q ss_pred             cCCCCCCEEeccCCcCC-CCCCh
Q 025516          222 CKLKSLELLSLRGCSNL-QRLPD  243 (251)
Q Consensus       222 ~~l~~L~~L~l~~n~~~-~~~p~  243 (251)
                      ..+.+|+.|++++|+.. ..+|+
T Consensus       269 ~~~~~L~~L~L~~N~~~~~~~~~  291 (305)
T d1xkua_         269 TKKASYSGVSLFSNPVQYWEIQP  291 (305)
T ss_dssp             TTSCCCSEEECCSSSSCGGGSCG
T ss_pred             cccCCCCEEECCCCcCccCcCCH
Confidence            45678888999888753 34444

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=4.7e-18  Score=135.95  Aligned_cols=183  Identities=18%  Similarity=0.129  Sum_probs=145.4

Q ss_pred             CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC--CcCCceEeecC-CCccc-----cccCcCC
Q 025516           62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH--SAEKLMFLEVP-NSDIE-----QLWNSVK  133 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~--~l~~L~~L~l~-~n~i~-----~l~~~~~  133 (251)
                      +++++|++++|.++...+.+|..+..++.++++.+.+..     ++...  .+..+..+... .+.+.     .+.++++
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~-----i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~  106 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLAR-----IDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGR  106 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCE-----ECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTT
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccc-----cccccccccccccccccccccccccccchhhccccc
Confidence            678999999999988777778888777666666555544     33322  46677777654 44554     4566789


Q ss_pred             ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccC
Q 025516          134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSD  210 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~  210 (251)
                      |++|++++|......+..++...+|+.+++++|.+.+..+..+  ++.|+.|++++|+++.+|+ .+.++++|+.+++++
T Consensus       107 L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~  186 (284)
T d1ozna_         107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (284)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhh
Confidence            9999999998666666677788999999999998766555444  7889999999999998765 678999999999999


Q ss_pred             CcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhcc
Q 025516          211 CKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASYR  249 (251)
Q Consensus       211 n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l~  249 (251)
                      |++.+..|..+..+++|++|++++|.+.+..|..++.+.
T Consensus       187 N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~  225 (284)
T d1ozna_         187 NRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLR  225 (284)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCT
T ss_pred             ccccccChhHhhhhhhccccccccccccccccccccccc
Confidence            999988899999999999999999988877767776553

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=9.9e-17  Score=122.58  Aligned_cols=163  Identities=20%  Similarity=0.211  Sum_probs=122.2

Q ss_pred             cCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCCccE
Q 025516           60 KMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVKLVI  136 (251)
Q Consensus        60 ~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~L~~  136 (251)
                      .+.+|+.|++++|.+....  .+..+.+|+     .++++++.++.++....+++|++|++++|++++   +..+++|+.
T Consensus        44 ~L~~L~~L~l~~~~i~~l~--~l~~l~~L~-----~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~  116 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSVQ--GIQYLPNVT-----KLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKS  116 (210)
T ss_dssp             HHHTCCEEECTTSCCCCCT--TGGGCTTCC-----EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCE
T ss_pred             HhcCccEEECcCCCCCCch--hHhhCCCCC-----EEeCCCccccCccccccCccccccccccccccccccccccccccc
Confidence            4677888888888776432  234444444     444445555556554578899999999998865   456778999


Q ss_pred             EEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCcc
Q 025516          137 LNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKS  216 (251)
Q Consensus       137 L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~  216 (251)
                      |++++|... .+ ..+..++.++.+++++|.+........+++|+.+++++|+++.++. +.++++|+.|++++|++. .
T Consensus       117 L~l~~~~~~-~~-~~l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~i~~-l~~l~~L~~L~Ls~N~i~-~  192 (210)
T d1h6ta2         117 LSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHIS-D  192 (210)
T ss_dssp             EECTTSCCC-CC-GGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-B
T ss_pred             ccccccccc-cc-cccccccccccccccccccccccccccccccccccccccccccccc-ccCCCCCCEEECCCCCCC-C
Confidence            999988743 33 3577889999999999986654434448899999999999998764 788999999999999865 4


Q ss_pred             CcccccCCCCCCEEeccC
Q 025516          217 LPSSLCKLKSLELLSLRG  234 (251)
Q Consensus       217 ~p~~~~~l~~L~~L~l~~  234 (251)
                      +| .+.++++|++|++++
T Consensus       193 l~-~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         193 LR-ALAGLKNLDVLELFS  209 (210)
T ss_dssp             CG-GGTTCTTCSEEEEEE
T ss_pred             Ch-hhcCCCCCCEEEccC
Confidence            55 589999999999875

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=2.4e-16  Score=121.76  Aligned_cols=182  Identities=16%  Similarity=0.182  Sum_probs=110.3

Q ss_pred             ceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCce
Q 025516           37 KIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLM  116 (251)
Q Consensus        37 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~  116 (251)
                      +++.+.+..+.+..+    ..+..+++|+.|++++|.+.+..+  +..+..++.     ..+.++.++.++....+++|+
T Consensus        42 ~L~~L~l~~~~i~~l----~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~-----l~~~~n~~~~i~~l~~l~~L~  110 (227)
T d1h6ua2          42 GITTLSAFGTGVTTI----EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITE-----LELSGNPLKNVSAIAGLQSIK  110 (227)
T ss_dssp             TCCEEECTTSCCCCC----TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCE-----EECCSCCCSCCGGGTTCTTCC
T ss_pred             CcCEEECCCCCCCcc----hhHhcCCCCcEeecCCceeecccc--ccccccccc-----ccccccccccccccccccccc
Confidence            445555555544432    246677788888887777665322  444444333     333444444454444677777


Q ss_pred             EeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccC
Q 025516          117 FLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEEL  193 (251)
Q Consensus       117 ~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~l  193 (251)
                      +++++++....   +.....++.+.++.+......  .+.+.++|++|++++|......+-..+++|++|++++|+++.+
T Consensus       111 ~l~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~l  188 (227)
T d1h6ua2         111 TLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI  188 (227)
T ss_dssp             EEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC
T ss_pred             ccccccccccccchhccccchhhhhchhhhhchhh--hhccccccccccccccccccchhhcccccceecccCCCccCCC
Confidence            77777776543   445556777777766533322  2556677777777777654433323367777777777777776


Q ss_pred             CcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccC
Q 025516          194 PSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG  234 (251)
Q Consensus       194 p~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  234 (251)
                      +. ++++++|+.|++++|++.+ ++ .++++++|+.|++++
T Consensus       189 ~~-l~~l~~L~~L~Ls~N~lt~-i~-~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         189 SP-LASLPNLIEVHLKNNQISD-VS-PLANTSNLFIVTLTN  226 (227)
T ss_dssp             GG-GGGCTTCCEEECTTSCCCB-CG-GGTTCTTCCEEEEEE
T ss_pred             hh-hcCCCCCCEEECcCCcCCC-Cc-ccccCCCCCEEEeeC
Confidence            53 6677777777777777543 33 267777777777753

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.69  E-value=9.2e-16  Score=123.56  Aligned_cols=172  Identities=19%  Similarity=0.218  Sum_probs=110.8

Q ss_pred             CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCC-CcCCceEeecCCCccccccCcC--------
Q 025516           62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQLWNSV--------  132 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~l~~~~--------  132 (251)
                      +++++|++++|.++...+..|..+..|+.++++++.+....    |..+ ++++|+++++++|+++.++...        
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~----~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~  106 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS----PGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR  106 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC----TTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEE
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccc----hhhhhCCCccCEecccCCccCcCccchhhhhhhhh
Confidence            78999999999998876667777777666666555554322    2223 6888888888888776543221        


Q ss_pred             --------------------------------------------CccEEEcCCCcCCccccCccccCCCccEEecCCCCC
Q 025516          133 --------------------------------------------KLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSK  168 (251)
Q Consensus       133 --------------------------------------------~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  168 (251)
                                                                  +|+++++++|.+ ..+|..+  +++|++|++++|..
T Consensus       107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l-~~l~~~~--~~~L~~L~l~~n~~  183 (305)
T d1xkua_         107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGL--PPSLTELHLDGNKI  183 (305)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC-CSCCSSC--CTTCSEEECTTSCC
T ss_pred             ccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCc-cccCccc--CCccCEEECCCCcC
Confidence                                                        444555554432 2233222  34555555655554


Q ss_pred             CCCCCccc--cCCccEEEccccCCccCC-cccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          169 LKRLPEIS--SGNIGQLFLSGTAIEELP-SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       169 ~~~~~~~~--~~~L~~L~l~~n~i~~lp-~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      ....+..+  ++.++.|++++|.++.++ ..+.++++|+.|++++|++. .+|.++..+++|++|++++|++. .++
T Consensus       184 ~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~-~i~  258 (305)
T d1xkua_         184 TKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIG  258 (305)
T ss_dssp             CEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC-CCC
T ss_pred             CCCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccC-ccC
Confidence            44443332  566777777777777654 35677888888888888754 55777888888888888886543 454

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.2e-15  Score=126.33  Aligned_cols=170  Identities=22%  Similarity=0.222  Sum_probs=82.2

Q ss_pred             hhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCC
Q 025516           57 TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVK  133 (251)
Q Consensus        57 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~  133 (251)
                      .+..+++++.+++++|.+.+..+  .....+     ++.++++++.+..++....+++|+.+++++|.+.+   +..+++
T Consensus       192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~-----L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~  264 (384)
T d2omza2         192 VLAKLTNLESLIATNNQISDITP--LGILTN-----LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK  264 (384)
T ss_dssp             GGGGCTTCSEEECCSSCCCCCGG--GGGCTT-----CCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTT
T ss_pred             ccccccccceeeccCCccCCCCc--ccccCC-----CCEEECCCCCCCCcchhhcccccchhccccCccCCCCccccccc
Confidence            44556666666666665554321  122222     33333344444444433345566666666665543   233455


Q ss_pred             ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516          134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR  213 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~  213 (251)
                      |++|++++|.+.+ ++. +.++..++.+.+..|.+.+......+++++.|++++|++++++. +..+++|+.|++++|++
T Consensus       265 L~~L~l~~~~l~~-~~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l  341 (384)
T d2omza2         265 LTELKLGANQISN-ISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKV  341 (384)
T ss_dssp             CSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCC
T ss_pred             CCEeeccCcccCC-CCc-cccccccccccccccccccccccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCC
Confidence            6666666555332 221 33455555555555544332211224555555555555555442 44555555555555554


Q ss_pred             CccCcccccCCCCCCEEeccCCcCC
Q 025516          214 LKSLPSSLCKLKSLELLSLRGCSNL  238 (251)
Q Consensus       214 ~~~~p~~~~~l~~L~~L~l~~n~~~  238 (251)
                      .+ ++ .++.+++|++|++++|++.
T Consensus       342 ~~-l~-~l~~l~~L~~L~l~~N~l~  364 (384)
T d2omza2         342 SD-VS-SLANLTNINWLSAGHNQIS  364 (384)
T ss_dssp             CC-CG-GGGGCTTCCEEECCSSCCC
T ss_pred             CC-Ch-hHcCCCCCCEEECCCCcCC
Confidence            32 22 3555555555555554433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.1e-15  Score=115.65  Aligned_cols=143  Identities=22%  Similarity=0.240  Sum_probs=59.0

Q ss_pred             hcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCCcc
Q 025516           59 AKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVKLV  135 (251)
Q Consensus        59 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~L~  135 (251)
                      ..+.+++.|++++|.+...  ..+..+++++     +++++++.+..++...++++|++|++++|.+..   +..+++|+
T Consensus        37 ~~l~~l~~L~l~~~~i~~l--~~l~~l~nL~-----~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~  109 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI--DGVEYLNNLT-----QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLT  109 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC--TTGGGCTTCC-----EEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCS
T ss_pred             HHhcCCCEEECCCCCCCCc--cccccCCCcC-----cCccccccccCcccccCCcccccccccccccccccccccccccc
Confidence            3566777777777765431  1122222222     222222222233322234444444444444332   23334444


Q ss_pred             EEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCccCCcccccCccCCEEeccCCc
Q 025516          136 ILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCK  212 (251)
Q Consensus       136 ~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~  212 (251)
                      .|++++|.... . ..+..+++|+.|++++|.+. .++... +++|++|++++|+++.++. ++++++|+.|++++|+
T Consensus       110 ~L~l~~~~~~~-~-~~~~~l~~L~~L~l~~n~l~-~~~~l~~~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~ls~N~  183 (199)
T d2omxa2         110 GLTLFNNQITD-I-DPLKNLTNLNRLELSSNTIS-DISALSGLTSLQQLNFSSNQVTDLKP-LANLTTLERLDISSNK  183 (199)
T ss_dssp             EEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC-CCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             ccccccccccc-c-cccchhhhhHHhhhhhhhhc-ccccccccccccccccccccccCCcc-ccCCCCCCEEECCCCC
Confidence            44444443222 1 12334444444444444332 122111 3444444444444444432 3444444444444444

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=1.5e-15  Score=114.95  Aligned_cols=151  Identities=23%  Similarity=0.248  Sum_probs=118.9

Q ss_pred             ceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCC
Q 025516           92 EVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSK  168 (251)
Q Consensus        92 ~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  168 (251)
                      .++.+++.++.+.+++..-.+++|++|++++|++++   +..+++|++|++++|.. ..++ .+++++.|+.|++++|..
T Consensus        41 ~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~-~~~~-~l~~l~~L~~L~l~~~~~  118 (199)
T d2omxa2          41 QVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQI-ADIT-PLANLTNLTGLTLFNNQI  118 (199)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCCG-GGTTCTTCSEEECCSSCC
T ss_pred             CCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCccccccccccccc-cccc-cccccccccccccccccc
Confidence            455666666666666644468999999999999975   45778999999999874 4444 378899999999999987


Q ss_pred             CCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          169 LKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       169 ~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      ....+-..+++|+.|++++|++..++ .+..+++|+.|++++|++.+ ++ .++++++|++|++++|++ +.+| .++++
T Consensus       119 ~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i-~~i~-~l~~L  193 (199)
T d2omxa2         119 TDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKV-SDIS-VLAKL  193 (199)
T ss_dssp             CCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC-CCCG-GGGGC
T ss_pred             ccccccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCC-CCCc-cccCC
Confidence            66544444899999999999998776 57889999999999998765 33 488999999999999865 4565 35554


Q ss_pred             c
Q 025516          249 R  249 (251)
Q Consensus       249 ~  249 (251)
                      +
T Consensus       194 ~  194 (199)
T d2omxa2         194 T  194 (199)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=2.4e-15  Score=116.10  Aligned_cols=178  Identities=18%  Similarity=0.172  Sum_probs=134.6

Q ss_pred             hhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccc---cccCcCC
Q 025516           57 TFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIE---QLWNSVK  133 (251)
Q Consensus        57 ~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~---~l~~~~~  133 (251)
                      .+.++.+|+.|++.+|.+...  ..+..+++|+.+++     +++.+..++....+.+++++++++|.++   .+..+++
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~l-----s~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~  108 (227)
T d1h6ua2          36 TQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLEL-----KDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQS  108 (227)
T ss_dssp             CHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEEC-----CSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTT
T ss_pred             CHHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeec-----CCceeecccccccccccccccccccccccccccccccc
Confidence            456789999999999988753  23555655555555     4444555554557899999999998876   4567889


Q ss_pred             ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcC
Q 025516          134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKR  213 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~  213 (251)
                      |+.+++++|...+.  ..+.....++.+.++.+......+...+++|++|++++|.+..++. ++++++|+.|++++|++
T Consensus       109 L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-l~~l~~L~~L~Ls~n~l  185 (227)
T d1h6ua2         109 IKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKI  185 (227)
T ss_dssp             CCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             cccccccccccccc--chhccccchhhhhchhhhhchhhhhccccccccccccccccccchh-hcccccceecccCCCcc
Confidence            99999998874432  2355678899999998877665554558899999999999987654 78899999999999986


Q ss_pred             CccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          214 LKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       214 ~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      .+ ++ .++++++|++|++++|++ +.+|. ++.+
T Consensus       186 ~~-l~-~l~~l~~L~~L~Ls~N~l-t~i~~-l~~l  216 (227)
T d1h6ua2         186 SD-IS-PLASLPNLIEVHLKNNQI-SDVSP-LANT  216 (227)
T ss_dssp             CC-CG-GGGGCTTCCEEECTTSCC-CBCGG-GTTC
T ss_pred             CC-Ch-hhcCCCCCCEEECcCCcC-CCCcc-cccC
Confidence            54 44 388999999999999864 46663 4444

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.63  E-value=6.7e-15  Score=121.67  Aligned_cols=184  Identities=18%  Similarity=0.209  Sum_probs=138.3

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCc
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKL  115 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L  115 (251)
                      .....+.+..+.+..+    ..+..+++|+.|++++|.+...  +.+..+..++.+     ++.++.+..++....+++|
T Consensus       197 ~~~~~l~l~~n~i~~~----~~~~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L-----~l~~n~l~~~~~~~~~~~L  265 (384)
T d2omza2         197 TNLESLIATNNQISDI----TPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDL-----DLANNQISNLAPLSGLTKL  265 (384)
T ss_dssp             TTCSEEECCSSCCCCC----GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE-----ECCSSCCCCCGGGTTCTTC
T ss_pred             cccceeeccCCccCCC----CcccccCCCCEEECCCCCCCCc--chhhcccccchh-----ccccCccCCCCcccccccC
Confidence            3444444544444332    1356789999999999987753  234455555444     4455555556655578999


Q ss_pred             eEeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccccCCccEEEccccCCcc
Q 025516          116 MFLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEISSGNIGQLFLSGTAIEE  192 (251)
Q Consensus       116 ~~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~i~~  192 (251)
                      +.++++++++.+   +.....++.++++.|.+.+ + ..+..+++++.|++++|.+.+..+-..+++|++|++++|+++.
T Consensus       266 ~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~-~-~~~~~~~~l~~L~ls~n~l~~l~~l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         266 TELKLGANQISNISPLAGLTALTNLELNENQLED-I-SPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             SEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSC-C-GGGGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCC
T ss_pred             CEeeccCcccCCCCcccccccccccccccccccc-c-cccchhcccCeEECCCCCCCCCcccccCCCCCEEECCCCCCCC
Confidence            999999998865   4567789999999987544 3 3477899999999999987664433348999999999999998


Q ss_pred             CCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCC
Q 025516          193 LPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       193 lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n  235 (251)
                      ++ .+.++++|+.|++++|++.+..|  ++++++|+.|++++|
T Consensus       344 l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            87 58899999999999999776544  889999999999987

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=2.3e-15  Score=113.28  Aligned_cols=123  Identities=20%  Similarity=0.166  Sum_probs=76.2

Q ss_pred             EeecCCCccccccCc--CCccEEEcCCCcCCccc-cCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCc
Q 025516          117 FLEVPNSDIEQLWNS--VKLVILNLSGSKSLKSL-PAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIE  191 (251)
Q Consensus       117 ~L~l~~n~i~~l~~~--~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~  191 (251)
                      .++.++++++.+|..  +++++|+|++|.+.+.+ +..++++++|++|++++|.+....+..+  ++.|++|++++|+++
T Consensus        12 ~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~   91 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK   91 (192)
T ss_dssp             EEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred             EEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccc
Confidence            445555555544431  35666777766654433 3445566777777777766655555443  566777777777777


Q ss_pred             cCCc-ccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCC
Q 025516          192 ELPS-SFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       192 ~lp~-~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~  239 (251)
                      .+|+ .|.++++|+.|+|++|++....|.+|..+++|++|++++|++..
T Consensus        92 ~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_          92 EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccc
Confidence            6654 45667777777777777666556666777777777777766544

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.61  E-value=1.2e-14  Score=110.70  Aligned_cols=151  Identities=21%  Similarity=0.190  Sum_probs=117.8

Q ss_pred             ceeEEeeccCCCCCCCCCCCcCCceEeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCC
Q 025516           92 EVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSK  168 (251)
Q Consensus        92 ~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  168 (251)
                      .++.+++.++.++.++..-.+++|++|++++|++++   +..+++|++|++++|++ ..+| .+.++++|+.|++++|..
T Consensus        47 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i-~~l~-~l~~l~~L~~L~l~~~~~  124 (210)
T d1h6ta2          47 SIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKV-KDLS-SLKDLKKLKSLSLEHNGI  124 (210)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCC-CCGG-GGTTCTTCCEEECTTSCC
T ss_pred             CccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCccccccccccccc-cccc-cccccccccccccccccc
Confidence            355666677776667654468999999999999875   45677899999999974 4455 478899999999999976


Q ss_pred             CCCCCccccCCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhhhc
Q 025516          169 LKRLPEISSGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLASY  248 (251)
Q Consensus       169 ~~~~~~~~~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~~l  248 (251)
                      ...-+-..++.++.+++++|.++..+ .+..+++|+.+++++|++.+ ++ .++++++|+.|++++|.+ +.+| .++.+
T Consensus       125 ~~~~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i-~~l~-~l~~l  199 (210)
T d1h6ta2         125 SDINGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHI-SDLR-ALAGL  199 (210)
T ss_dssp             CCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCC-CBCG-GGTTC
T ss_pred             cccccccccccccccccccccccccc-cccccccccccccccccccc-cc-cccCCCCCCEEECCCCCC-CCCh-hhcCC
Confidence            54322233789999999999998755 46789999999999999764 43 388999999999999865 5676 46655


Q ss_pred             c
Q 025516          249 R  249 (251)
Q Consensus       249 ~  249 (251)
                      +
T Consensus       200 ~  200 (210)
T d1h6ta2         200 K  200 (210)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.5e-15  Score=111.03  Aligned_cols=121  Identities=15%  Similarity=0.125  Sum_probs=85.4

Q ss_pred             CCcCCceEeecCCCcccccc----CcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEE
Q 025516          110 HSAEKLMFLEVPNSDIEQLW----NSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQL  183 (251)
Q Consensus       110 ~~l~~L~~L~l~~n~i~~l~----~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L  183 (251)
                      .++..+++|++++|+|+.++    .+.+|++|++++|.+ ..++ .++.+++|++|++++|.+.+..+...  +++|+.|
T Consensus        15 ~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i-~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L   92 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-RKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL   92 (162)
T ss_dssp             ECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCC-CEEC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred             cCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCC-CccC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence            35566777777777776543    345788888888764 3443 36778888888888887655444332  7888888


Q ss_pred             EccccCCccCCc--ccccCccCCEEeccCCcCCccC---cccccCCCCCCEEec
Q 025516          184 FLSGTAIEELPS--SFELLLRLWLLDLSDCKRLKSL---PSSLCKLKSLELLSL  232 (251)
Q Consensus       184 ~l~~n~i~~lp~--~~~~l~~L~~L~l~~n~~~~~~---p~~~~~l~~L~~L~l  232 (251)
                      ++++|+++.++.  .+..+++|+.|++++|++....   +..+..+++|++||-
T Consensus        93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            888888887764  5678889999999998864332   235678888988873

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.9e-14  Score=111.86  Aligned_cols=192  Identities=16%  Similarity=0.107  Sum_probs=114.9

Q ss_pred             CceEEEEeecCCcccccCCchhhhcCCCccEEEeecccCCCC-CccccccCCcceeccee-EEeeccCCCCCCCC-CC-C
Q 025516           36 EKIEGICLDLSKVKEIPLNPNTFAKMRKLRFLKFYSSSFNGE-NRCKVSHLQDLRFAEVK-YLHWHGYPLKSLPS-NH-S  111 (251)
Q Consensus        36 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~l~~l~L~-~~~l~~~~~~~~~~-~~-~  111 (251)
                      ..++.+.+..+.+..+  .+.+|.++++|++|++++|.+... .+.+|..+..+..+.+. .+.+.     .++. .+ +
T Consensus        29 ~~l~~L~Ls~n~i~~l--~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~-----~~~~~~~~~  101 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVI--QKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-----YINPEAFQN  101 (242)
T ss_dssp             SCCSEEEEESCCCCEE--CTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC-----EECTTSEEC
T ss_pred             CCCCEEECcCCcCCcc--ChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc-----ccccccccc
Confidence            3566666666665543  356788888888888888876653 33445555555544332 22222     2222 22 5


Q ss_pred             cCCceEeecCCCccccccC------cCCccEEEcCCCcCCccccCccccCC-CccEEecCCCCCCCCCCccc-cCCccEE
Q 025516          112 AEKLMFLEVPNSDIEQLWN------SVKLVILNLSGSKSLKSLPAGIFNLE-FLTELDLSGCSKLKRLPEIS-SGNIGQL  183 (251)
Q Consensus       112 l~~L~~L~l~~n~i~~l~~------~~~L~~L~l~~n~~~~~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~-~~~L~~L  183 (251)
                      +++|+++++++|++...+.      +..+..+...++......+..+.++. .++.+++.+|++....+..+ ..+++++
T Consensus       102 l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~  181 (242)
T d1xwdc1         102 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDEL  181 (242)
T ss_dssp             CTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEE
T ss_pred             cccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhcc
Confidence            7888888888887754332      23444445555443333334454544 67788888877654333333 4555555


Q ss_pred             E-ccccCCccCCcc-cccCccCCEEeccCCcCCccCcccccCCCCCCEEeccC
Q 025516          184 F-LSGTAIEELPSS-FELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRG  234 (251)
Q Consensus       184 ~-l~~n~i~~lp~~-~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~  234 (251)
                      . +++|+++++|.. +.++++|+.|++++|++....+..+.++++|+.+++.+
T Consensus       182 ~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~  234 (242)
T d1xwdc1         182 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN  234 (242)
T ss_dssp             ECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEES
T ss_pred             ccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCC
Confidence            4 567778888764 67788888888888886544344566666666555544

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.55  E-value=7.8e-15  Score=110.26  Aligned_cols=80  Identities=16%  Similarity=0.145  Sum_probs=36.3

Q ss_pred             cCCceEeecCCCcccc-----ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEE
Q 025516          112 AEKLMFLEVPNSDIEQ-----LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLF  184 (251)
Q Consensus       112 l~~L~~L~l~~n~i~~-----l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~  184 (251)
                      +++|+.|++++|.+..     +..+++|++|++++|++....|..|.++++|++|++++|++.+..+..+  +++|++|+
T Consensus        53 l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~  132 (192)
T d1w8aa_          53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CceEeeeeccccccccccccccccccccceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccc
Confidence            4455555555554432     2233445555555554333333344445555555555554433333322  44455555


Q ss_pred             ccccCCc
Q 025516          185 LSGTAIE  191 (251)
Q Consensus       185 l~~n~i~  191 (251)
                      +++|.+.
T Consensus       133 L~~N~~~  139 (192)
T d1w8aa_         133 LASNPFN  139 (192)
T ss_dssp             CTTCCBC
T ss_pred             ccccccc
Confidence            5555444

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=2.7e-14  Score=99.52  Aligned_cols=96  Identities=21%  Similarity=0.291  Sum_probs=53.7

Q ss_pred             EeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEccccCCcc
Q 025516          117 FLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLSGTAIEE  192 (251)
Q Consensus       117 ~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~~n~i~~  192 (251)
                      .|++++|+++.   +..+.+|++|++++|. ...+|..++.+++|++|++++|.+.+ ++... +++|++|++++|+++.
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~-l~~lp~~~~~l~~L~~L~l~~N~i~~-l~~~~~l~~L~~L~l~~N~i~~   79 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNR-LRALPPALAALRCLEVLQASDNALEN-VDGVANLPRLQELLLCNNRLQQ   79 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCCC-CGGGTTCSSCCEEECCSSCCCS
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCc-cCcchhhhhhhhcccccccccccccc-cCccccccccCeEECCCCccCC
Confidence            44555555543   3344566666666665 33455556666666666666665443 23322 5566666666666665


Q ss_pred             CCc--ccccCccCCEEeccCCcCC
Q 025516          193 LPS--SFELLLRLWLLDLSDCKRL  214 (251)
Q Consensus       193 lp~--~~~~l~~L~~L~l~~n~~~  214 (251)
                      +|.  .+..+++|+.|++++|++.
T Consensus        80 ~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          80 SAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             SSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             CCCchhhcCCCCCCEEECCCCcCC
Confidence            542  3455666666666666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=2.1e-13  Score=94.89  Aligned_cols=100  Identities=28%  Similarity=0.219  Sum_probs=84.4

Q ss_pred             cEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCCEEeccCCc
Q 025516          135 VILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCK  212 (251)
Q Consensus       135 ~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~  212 (251)
                      |+|++++|++. .++. ++.+++|++|++++|.+. .+|...  +++|+.|++++|.++.+| .++.+++|+.|++++|+
T Consensus         1 R~L~Ls~n~l~-~l~~-l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCC-CCcc-cccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC-ccccccccCeEECCCCc
Confidence            68999999854 5554 889999999999999875 555433  899999999999999987 48899999999999999


Q ss_pred             CCccC-cccccCCCCCCEEeccCCcCC
Q 025516          213 RLKSL-PSSLCKLKSLELLSLRGCSNL  238 (251)
Q Consensus       213 ~~~~~-p~~~~~l~~L~~L~l~~n~~~  238 (251)
                      +.... +..++.+++|++|++++|++.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            76543 356899999999999998775

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.46  E-value=5.3e-12  Score=102.46  Aligned_cols=61  Identities=25%  Similarity=0.220  Sum_probs=48.3

Q ss_pred             CCccEEEccccCCccCCcccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCChhhh
Q 025516          178 GNIGQLFLSGTAIEELPSSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDRLA  246 (251)
Q Consensus       178 ~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~l~  246 (251)
                      ++|++|++++|+++.+|..   +++|+.|++++|++. .+|.   .+++|++|++++|+ ++.+|....
T Consensus       284 ~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~-L~~lp~~~~  344 (353)
T d1jl5a_         284 PSLEELNVSNNKLIELPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNP-LREFPDIPE  344 (353)
T ss_dssp             TTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSC-CSSCCCCCT
T ss_pred             CCCCEEECCCCccCccccc---cCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCc-CCCCCcccc
Confidence            5799999999999999864   578999999999865 5665   35689999999987 456765433

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=6.3e-13  Score=103.02  Aligned_cols=182  Identities=14%  Similarity=0.030  Sum_probs=122.3

Q ss_pred             CCccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCC-C-CcCCceEeecCC-Cccc-----cccCcCC
Q 025516           62 RKLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSN-H-SAEKLMFLEVPN-SDIE-----QLWNSVK  133 (251)
Q Consensus        62 ~~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~-~-~l~~L~~L~l~~-n~i~-----~l~~~~~  133 (251)
                      +++++|++++|.+......+|..+.+|+.+++++|.+..    .++.. + .+..++++.+.+ +.+.     .+..+++
T Consensus        29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~----~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~  104 (242)
T d1xwdc1          29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE----VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPN  104 (242)
T ss_dssp             SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCC----EECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTT
T ss_pred             CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccc----eeecccccccccccccccccccccccccccccccccc
Confidence            589999999999987666678888877777776665433    23222 2 577888887654 4553     3567789


Q ss_pred             ccEEEcCCCcCCcccc-CccccCCCccEEecCCCCCCCCCCccc---cCCccEEEccccCCccCCcccccCccCCEEe-c
Q 025516          134 LVILNLSGSKSLKSLP-AGIFNLEFLTELDLSGCSKLKRLPEIS---SGNIGQLFLSGTAIEELPSSFELLLRLWLLD-L  208 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~~---~~~L~~L~l~~n~i~~lp~~~~~l~~L~~L~-l  208 (251)
                      |+++++++|.+....+ ..+..++.+..+...++.+...-+..+   ...++.|++++|+++.++......++++.+. +
T Consensus       105 L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l  184 (242)
T d1xwdc1         105 LQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLS  184 (242)
T ss_dssp             CCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECT
T ss_pred             ccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccccccccccchhhhccccc
Confidence            9999999987543322 123345556555555554433222222   3578899999999999888766667766664 5


Q ss_pred             cCCcCCccCcccccCCCCCCEEeccCCcCCCCCChh-hhhc
Q 025516          209 SDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLPDR-LASY  248 (251)
Q Consensus       209 ~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p~~-l~~l  248 (251)
                      ++|.+....+..+.++++|++|++++|++. .+|.+ +..+
T Consensus       185 ~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~-~l~~~~~~~l  224 (242)
T d1xwdc1         185 DNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENL  224 (242)
T ss_dssp             TCTTCCCCCTTTTTTSCCCSEEECTTSCCC-CCCSSSCTTC
T ss_pred             cccccccccHHHhcCCCCCCEEECCCCcCC-ccCHHHHcCC
Confidence            666654433456899999999999998765 66653 4444

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2.9e-13  Score=98.70  Aligned_cols=116  Identities=16%  Similarity=0.150  Sum_probs=81.7

Q ss_pred             eeEEeeccCCCCCCCCCC-CcCCceEeecCCCcccc---ccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCC
Q 025516           93 VKYLHWHGYPLKSLPSNH-SAEKLMFLEVPNSDIEQ---LWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSK  168 (251)
Q Consensus        93 L~~~~l~~~~~~~~~~~~-~l~~L~~L~l~~n~i~~---l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~  168 (251)
                      ++.++++++.++.++... .+.+|++|++++|+|+.   ++.+++|++|++++|.+....+..+..+++|++|++++|.+
T Consensus        20 lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~i   99 (162)
T d1a9na_          20 DRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL   99 (162)
T ss_dssp             CEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred             CcEEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCCccccccccccccceeccccc
Confidence            444444444444555433 46778888888887764   45667899999999885443333345789999999999976


Q ss_pred             CCC--CCcc-ccCCccEEEccccCCccCCc----ccccCccCCEEec
Q 025516          169 LKR--LPEI-SSGNIGQLFLSGTAIEELPS----SFELLLRLWLLDL  208 (251)
Q Consensus       169 ~~~--~~~~-~~~~L~~L~l~~n~i~~lp~----~~~~l~~L~~L~l  208 (251)
                      ...  +... .+++|++|++++|.++..|.    .+..+|+|+.||-
T Consensus       100 ~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_         100 VELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETT
T ss_pred             cccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCC
Confidence            542  2222 27899999999999988874    4678999999984

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.3e-13  Score=109.82  Aligned_cols=173  Identities=21%  Similarity=0.247  Sum_probs=93.5

Q ss_pred             cCCCccEEEeecccCCCCCc-cccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCC-cccc------ccCc
Q 025516           60 KMRKLRFLKFYSSSFNGENR-CKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNS-DIEQ------LWNS  131 (251)
Q Consensus        60 ~l~~L~~L~l~~n~~~~~~~-~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n-~i~~------l~~~  131 (251)
                      ...+|++|+++++.+..... ..+..+.+++.++++.+.+++..+..+.   .+++|++|+++++ .+++      ...+
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~---~~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLA---KNSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHT---TCTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHh---cCCCCcCccccccccccccccchhhHHH
Confidence            44567777777666543221 1234455555555555544432222222   4566777777764 4431      1245


Q ss_pred             CCccEEEcCCCcCCcc--ccCcccc-CCCccEEecCCCCC-CCC--CCccc--cCCccEEEccccC-Cc-cCCcccccCc
Q 025516          132 VKLVILNLSGSKSLKS--LPAGIFN-LEFLTELDLSGCSK-LKR--LPEIS--SGNIGQLFLSGTA-IE-ELPSSFELLL  201 (251)
Q Consensus       132 ~~L~~L~l~~n~~~~~--~~~~~~~-l~~L~~L~l~~n~~-~~~--~~~~~--~~~L~~L~l~~n~-i~-~lp~~~~~l~  201 (251)
                      ++|++|++++|.....  ....+.. .++|+.|+++++.. .+.  +....  +++|++|++++|. ++ .....+.+++
T Consensus       121 ~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~  200 (284)
T d2astb2         121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN  200 (284)
T ss_dssp             TTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCT
T ss_pred             HhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccC
Confidence            6777777777643321  1222222 35677777776531 111  11111  5677777777653 44 3444566677


Q ss_pred             cCCEEeccCCc-CCccCcccccCCCCCCEEeccCC
Q 025516          202 RLWLLDLSDCK-RLKSLPSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       202 ~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n  235 (251)
                      +|+.|++++|. +.......++++++|+.|++.+|
T Consensus       201 ~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             cCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            77777777754 33444455667777777777776

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.31  E-value=6e-15  Score=111.39  Aligned_cols=119  Identities=21%  Similarity=0.175  Sum_probs=80.7

Q ss_pred             CcCCceEeecCCCccccc---cCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc-cCCccEEEcc
Q 025516          111 SAEKLMFLEVPNSDIEQL---WNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS-SGNIGQLFLS  186 (251)
Q Consensus       111 ~l~~L~~L~l~~n~i~~l---~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~-~~~L~~L~l~  186 (251)
                      .+.+|++|++++|+|+.+   ..+++|++|++++|. ...+|.....+++|++|++++|.+.. ++... +++|+.|+++
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L~l~~N~i~~-l~~~~~l~~L~~L~L~  123 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKISSLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQIAS-LSGIEKLVNLRVLYMS  123 (198)
T ss_dssp             HTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEEECSEEECCC-HHHHHHHHHSSEEEES
T ss_pred             cccccceeECcccCCCCcccccCCccccChhhcccc-cccccccccccccccccccccccccc-cccccccccccccccc
Confidence            356666677776666544   345677888887776 34455444445678888888876544 33222 6788888888


Q ss_pred             ccCCccCCc--ccccCccCCEEeccCCcCCccCcc----------cccCCCCCCEEe
Q 025516          187 GTAIEELPS--SFELLLRLWLLDLSDCKRLKSLPS----------SLCKLKSLELLS  231 (251)
Q Consensus       187 ~n~i~~lp~--~~~~l~~L~~L~l~~n~~~~~~p~----------~~~~l~~L~~L~  231 (251)
                      +|+++.++.  .+..+++|+.|++++|++....+.          .+..+|+|++||
T Consensus       124 ~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         124 NNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             EEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             cchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            888887763  577888899999998886544332          256788888886

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1e-12  Score=104.47  Aligned_cols=137  Identities=28%  Similarity=0.293  Sum_probs=100.6

Q ss_pred             CcCCceEeecCCCccc-----cccCcCCccEEEcCCCcCCcc--ccCccccCCCccEEecCCCCCCCCCC--c---cccC
Q 025516          111 SAEKLMFLEVPNSDIE-----QLWNSVKLVILNLSGSKSLKS--LPAGIFNLEFLTELDLSGCSKLKRLP--E---ISSG  178 (251)
Q Consensus       111 ~l~~L~~L~l~~n~i~-----~l~~~~~L~~L~l~~n~~~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~--~---~~~~  178 (251)
                      .+++|++|++.++.+.     .+...++|++|++++|...+.  +..-..++++|++|++++|...++..  .   ..++
T Consensus        69 ~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~  148 (284)
T d2astb2          69 QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSE  148 (284)
T ss_dssp             TBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCT
T ss_pred             hCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhccccc
Confidence            5789999999999875     467788999999999864442  22223468999999999986554321  1   1157


Q ss_pred             CccEEEccccC--Cc--cCCcccccCccCCEEeccCCc-CCccCcccccCCCCCCEEeccCCcCCC-CCChhhhh
Q 025516          179 NIGQLFLSGTA--IE--ELPSSFELLLRLWLLDLSDCK-RLKSLPSSLCKLKSLELLSLRGCSNLQ-RLPDRLAS  247 (251)
Q Consensus       179 ~L~~L~l~~n~--i~--~lp~~~~~l~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~L~l~~n~~~~-~~p~~l~~  247 (251)
                      .|+.|+++++.  ++  .+...+.++++|+.|++++|. +....+..+.++++|++|++++|..++ .....+++
T Consensus       149 ~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~  223 (284)
T d2astb2         149 TITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE  223 (284)
T ss_dssp             TCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG
T ss_pred             ccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhc
Confidence            89999999863  44  344455688999999999986 455667788999999999999986543 33334444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.9e-10  Score=82.82  Aligned_cols=86  Identities=23%  Similarity=0.127  Sum_probs=43.8

Q ss_pred             ccCcCCccEEEcCCCcCCccc-cCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCC
Q 025516          128 LWNSVKLVILNLSGSKSLKSL-PAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLW  204 (251)
Q Consensus       128 l~~~~~L~~L~l~~n~~~~~~-~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~  204 (251)
                      ++.+++|++|++++|+....+ +..|.++++|+.|++++|++....+..+  +++|++|+|++|+++.+|.......+|+
T Consensus        27 l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~~l~  106 (156)
T d2ifga3          27 LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ  106 (156)
T ss_dssp             SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCCCC
T ss_pred             ccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhcccccc
Confidence            344455555555544323333 2345555566666666555443333322  4555555666666655555443334566


Q ss_pred             EEeccCCcC
Q 025516          205 LLDLSDCKR  213 (251)
Q Consensus       205 ~L~l~~n~~  213 (251)
                      .|+|++|++
T Consensus       107 ~L~L~~Np~  115 (156)
T d2ifga3         107 ELVLSGNPL  115 (156)
T ss_dssp             EEECCSSCC
T ss_pred             ccccCCCcc
Confidence            666666554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=2.7e-10  Score=81.98  Aligned_cols=103  Identities=22%  Similarity=0.108  Sum_probs=81.3

Q ss_pred             ccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCc-cc--cCCccEEEccccCCccCCc-ccccCccCCEEecc
Q 025516          134 LVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPE-IS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLS  209 (251)
Q Consensus       134 L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~-~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~  209 (251)
                      .+.++.+++. ....|..+.++++|++|++.++..++.++. .+  +++|+.|++++|+|+.+++ .|..+++|+.|+|+
T Consensus        10 ~~~l~c~~~~-~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls   88 (156)
T d2ifga3          10 SSGLRCTRDG-ALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (156)
T ss_dssp             SSCEECCSSC-CCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CCeEEecCCC-CccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence            4457777655 445677788899999999998875665553 23  7899999999999998864 68899999999999


Q ss_pred             CCcCCccCcccccCCCCCCEEeccCCcCC
Q 025516          210 DCKRLKSLPSSLCKLKSLELLSLRGCSNL  238 (251)
Q Consensus       210 ~n~~~~~~p~~~~~l~~L~~L~l~~n~~~  238 (251)
                      +|++. .+|.......+|++|++++|++.
T Consensus        89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~  116 (156)
T d2ifga3          89 FNALE-SLSWKTVQGLSLQELVLSGNPLH  116 (156)
T ss_dssp             SSCCS-CCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CCCCc-ccChhhhccccccccccCCCccc
Confidence            99976 55554445557999999999774

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.08  E-value=4.9e-09  Score=84.49  Aligned_cols=93  Identities=23%  Similarity=0.237  Sum_probs=47.6

Q ss_pred             CccEEEeecccCCCCCccccccCCcceecceeEEeeccCCCCCCCCCCCcCCceEeecCCCccccccCcC-CccEEEcCC
Q 025516           63 KLRFLKFYSSSFNGENRCKVSHLQDLRFAEVKYLHWHGYPLKSLPSNHSAEKLMFLEVPNSDIEQLWNSV-KLVILNLSG  141 (251)
Q Consensus        63 ~L~~L~l~~n~~~~~~~~~l~~l~~l~~l~L~~~~l~~~~~~~~~~~~~l~~L~~L~l~~n~i~~l~~~~-~L~~L~l~~  141 (251)
                      +++.|+++++.++.. |..   +.     +|+.++++++.++.+|..  +.+|+.|++.+|+++.++.++ .|++|++++
T Consensus        39 ~l~~LdLs~~~L~~l-p~~---~~-----~L~~L~Ls~N~l~~lp~~--~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~  107 (353)
T d1jl5a_          39 QAHELELNNLGLSSL-PEL---PP-----HLESLVASCNSLTELPEL--PQSLKSLLVDNNNLKALSDLPPLLEYLGVSN  107 (353)
T ss_dssp             TCSEEECTTSCCSCC-CSC---CT-----TCSEEECCSSCCSSCCCC--CTTCCEEECCSSCCSCCCSCCTTCCEEECCS
T ss_pred             CCCEEEeCCCCCCCC-CCC---CC-----CCCEEECCCCCCcccccc--hhhhhhhhhhhcccchhhhhccccccccccc
Confidence            455666666655431 111   11     233334444444455542  345666666666666555544 366666666


Q ss_pred             CcCCccccCccccCCCccEEecCCCCC
Q 025516          142 SKSLKSLPAGIFNLEFLTELDLSGCSK  168 (251)
Q Consensus       142 n~~~~~~~~~~~~l~~L~~L~l~~n~~  168 (251)
                      |. ...+|. ++.+++|++|++++|..
T Consensus       108 n~-l~~lp~-~~~l~~L~~L~l~~~~~  132 (353)
T d1jl5a_         108 NQ-LEKLPE-LQNSSFLKIIDVDNNSL  132 (353)
T ss_dssp             SC-CSSCCC-CTTCTTCCEEECCSSCC
T ss_pred             cc-cccccc-hhhhccceeeccccccc
Confidence            65 334443 45566666666665543

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.05  E-value=2.3e-12  Score=96.92  Aligned_cols=110  Identities=23%  Similarity=0.228  Sum_probs=89.4

Q ss_pred             cccCcCCccEEEcCCCcCCccccCccccCCCccEEecCCCCCCCCCCccc--cCCccEEEccccCCccCCcccccCccCC
Q 025516          127 QLWNSVKLVILNLSGSKSLKSLPAGIFNLEFLTELDLSGCSKLKRLPEIS--SGNIGQLFLSGTAIEELPSSFELLLRLW  204 (251)
Q Consensus       127 ~l~~~~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~L~~L~l~~n~i~~lp~~~~~l~~L~  204 (251)
                      .+..+++|++|++++|.+ ..++ .++++++|++|++++|.+. .++...  ++.|++|++++|.++.++ .+..+++|+
T Consensus        43 sl~~L~~L~~L~Ls~n~I-~~i~-~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~  118 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNI-EKIS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASLS-GIEKLVNLR  118 (198)
T ss_dssp             HHHHTTTCCEEECSEEEE-SCCC-CHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSS
T ss_pred             HHhcccccceeECcccCC-CCcc-cccCCccccChhhcccccc-cccccccccccccccccccccccccc-ccccccccc
Confidence            466788999999999984 4555 4889999999999999754 555443  568999999999999875 478899999


Q ss_pred             EEeccCCcCCccCc-ccccCCCCCCEEeccCCcCCCC
Q 025516          205 LLDLSDCKRLKSLP-SSLCKLKSLELLSLRGCSNLQR  240 (251)
Q Consensus       205 ~L~l~~n~~~~~~p-~~~~~l~~L~~L~l~~n~~~~~  240 (251)
                      .|++++|++..... ..+..+++|++|++++|++...
T Consensus       119 ~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~  155 (198)
T d1m9la_         119 VLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND  155 (198)
T ss_dssp             EEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHH
T ss_pred             ccccccchhccccccccccCCCccceeecCCCccccC
Confidence            99999999754322 4689999999999999876543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=7.2e-13  Score=111.31  Aligned_cols=83  Identities=24%  Similarity=0.187  Sum_probs=52.0

Q ss_pred             CccEEecCCCCCCCCCCc----cc--cCCccEEEccccCCcc-----CCcccc-cCccCCEEeccCCcCCcc----Cccc
Q 025516          157 FLTELDLSGCSKLKRLPE----IS--SGNIGQLFLSGTAIEE-----LPSSFE-LLLRLWLLDLSDCKRLKS----LPSS  220 (251)
Q Consensus       157 ~L~~L~l~~n~~~~~~~~----~~--~~~L~~L~l~~n~i~~-----lp~~~~-~l~~L~~L~l~~n~~~~~----~p~~  220 (251)
                      .|+.+++++|.+......    ..  .++|++|++++|.++.     ++..+. ..+.|+.|++++|.+...    ++..
T Consensus       313 ~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~  392 (460)
T d1z7xw1         313 QLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAAT  392 (460)
T ss_dssp             CCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHH
T ss_pred             ccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHH
Confidence            455666666543322111    11  4578888888888762     344443 456788888888887532    4455


Q ss_pred             ccCCCCCCEEeccCCcCCC
Q 025516          221 LCKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       221 ~~~l~~L~~L~l~~n~~~~  239 (251)
                      +..+++|++|++++|++..
T Consensus       393 l~~~~~L~~L~Ls~N~i~~  411 (460)
T d1z7xw1         393 LLANHSLRELDLSNNCLGD  411 (460)
T ss_dssp             HHHCCCCCEEECCSSSCCH
T ss_pred             HhcCCCCCEEECCCCcCCH
Confidence            6677888888888876654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.00  E-value=1.4e-11  Score=100.39  Aligned_cols=184  Identities=17%  Similarity=0.118  Sum_probs=114.5

Q ss_pred             hhhhcCCCccEEEeecccCCCCCcccc----ccCCcceecceeEEeeccCCCCCCCCC----------CCcCCceEeecC
Q 025516           56 NTFAKMRKLRFLKFYSSSFNGENRCKV----SHLQDLRFAEVKYLHWHGYPLKSLPSN----------HSAEKLMFLEVP  121 (251)
Q Consensus        56 ~~~~~l~~L~~L~l~~n~~~~~~~~~l----~~l~~l~~l~L~~~~l~~~~~~~~~~~----------~~l~~L~~L~l~  121 (251)
                      ..+..+++|+.|++++|.+.......+    .....++.++++++.+.......+...          .....|+.+.++
T Consensus        87 ~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~  166 (344)
T d2ca6a1          87 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  166 (344)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecc
Confidence            345567888888888887765432222    233444444444443321110011000          134567888888


Q ss_pred             CCcccc---------ccCcCCccEEEcCCCcCCcc-----ccCccccCCCccEEecCCCCCCCC----CCcc--ccCCcc
Q 025516          122 NSDIEQ---------LWNSVKLVILNLSGSKSLKS-----LPAGIFNLEFLTELDLSGCSKLKR----LPEI--SSGNIG  181 (251)
Q Consensus       122 ~n~i~~---------l~~~~~L~~L~l~~n~~~~~-----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~--~~~~L~  181 (251)
                      +|.+..         +.....|+.|++++|.+...     +...+...++|+.|++++|.+...    +...  .+++|+
T Consensus       167 ~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~  246 (344)
T d2ca6a1         167 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  246 (344)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             cccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccch
Confidence            887642         34556899999999875432     234466788899999999875422    1111  267899


Q ss_pred             EEEccccCCcc-----CCcccc--cCccCCEEeccCCcCCcc----Ccccc-cCCCCCCEEeccCCcCCC
Q 025516          182 QLFLSGTAIEE-----LPSSFE--LLLRLWLLDLSDCKRLKS----LPSSL-CKLKSLELLSLRGCSNLQ  239 (251)
Q Consensus       182 ~L~l~~n~i~~-----lp~~~~--~l~~L~~L~l~~n~~~~~----~p~~~-~~l~~L~~L~l~~n~~~~  239 (251)
                      +|++++|.++.     +...+.  ..+.|+.|++++|.+...    +...+ .++++|++|++++|.+..
T Consensus       247 ~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             hhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            99999999873     323333  346799999999987643    33444 367899999999977654

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.00  E-value=1e-11  Score=101.18  Aligned_cols=205  Identities=13%  Similarity=0.058  Sum_probs=132.0

Q ss_pred             CCceEEEEeecCCccccc--CCchhhhcCCCccEEEeecccCCCCCc----------cccccCCcceecceeEEeeccCC
Q 025516           35 TEKIEGICLDLSKVKEIP--LNPNTFAKMRKLRFLKFYSSSFNGENR----------CKVSHLQDLRFAEVKYLHWHGYP  102 (251)
Q Consensus        35 ~~~~~~~~l~~~~~~~~~--~~~~~~~~l~~L~~L~l~~n~~~~~~~----------~~l~~l~~l~~l~L~~~~l~~~~  102 (251)
                      ...++.+.+..+.+....  .....+...++|+.+.++++.......          ..+...+.++.++++.|.+....
T Consensus        30 ~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~  109 (344)
T d2ca6a1          30 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTA  109 (344)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTT
T ss_pred             CCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccccc
Confidence            455666777665553221  113456678999999998876443221          11233455666666655555433


Q ss_pred             CCCCCCCC-CcCCceEeecCCCcccc------------------ccCcCCccEEEcCCCcCCcc----ccCccccCCCcc
Q 025516          103 LKSLPSNH-SAEKLMFLEVPNSDIEQ------------------LWNSVKLVILNLSGSKSLKS----LPAGIFNLEFLT  159 (251)
Q Consensus       103 ~~~~~~~~-~l~~L~~L~l~~n~i~~------------------l~~~~~L~~L~l~~n~~~~~----~~~~~~~l~~L~  159 (251)
                      +..+...+ ..++|++|++++|.+..                  ....+.|+.+++++|.+...    +...+...++|+
T Consensus       110 ~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~  189 (344)
T d2ca6a1         110 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLH  189 (344)
T ss_dssp             HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCC
T ss_pred             ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhhhc
Confidence            33333322 46789999999998631                  12355789999998875432    233445678899


Q ss_pred             EEecCCCCCCCC-----CCcc--ccCCccEEEccccCCc-----cCCcccccCccCCEEeccCCcCCccCc----ccccC
Q 025516          160 ELDLSGCSKLKR-----LPEI--SSGNIGQLFLSGTAIE-----ELPSSFELLLRLWLLDLSDCKRLKSLP----SSLCK  223 (251)
Q Consensus       160 ~L~l~~n~~~~~-----~~~~--~~~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~~~~~p----~~~~~  223 (251)
                      +|++++|.+...     +...  ..+.|+.|++++|.++     .+...+..+++|+.|++++|.+.....    ..+..
T Consensus       190 ~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~  269 (344)
T d2ca6a1         190 TVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSK  269 (344)
T ss_dssp             EEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHT
T ss_pred             ccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhh
Confidence            999999976532     1121  2678999999999886     245567788999999999999765422    33333


Q ss_pred             --CCCCCEEeccCCcCCC
Q 025516          224 --LKSLELLSLRGCSNLQ  239 (251)
Q Consensus       224 --l~~L~~L~l~~n~~~~  239 (251)
                        .+.|++|++++|++..
T Consensus       270 ~~~~~L~~L~ls~N~i~~  287 (344)
T d2ca6a1         270 LENIGLQTLRLQYNEIEL  287 (344)
T ss_dssp             CSSCCCCEEECCSSCCBH
T ss_pred             ccCCCCCEEECCCCcCCh
Confidence              4679999999987543

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=2e-08  Score=72.35  Aligned_cols=78  Identities=22%  Similarity=0.105  Sum_probs=46.7

Q ss_pred             cCCCccEEecCCCCCCCCCC--ccc--cCCccEEEccccCCccCCc-ccccCccCCEEeccCCcCCccCcc-------cc
Q 025516          154 NLEFLTELDLSGCSKLKRLP--EIS--SGNIGQLFLSGTAIEELPS-SFELLLRLWLLDLSDCKRLKSLPS-------SL  221 (251)
Q Consensus       154 ~l~~L~~L~l~~n~~~~~~~--~~~--~~~L~~L~l~~n~i~~lp~-~~~~l~~L~~L~l~~n~~~~~~p~-------~~  221 (251)
                      .+++|++|++++|++...-+  ...  +++|+.|++++|.|+.+++ ...+..+|+.|++++|++......       .+
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~  142 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIR  142 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHH
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHHH
Confidence            45666666666665543211  111  5677777777777776664 223445677788888777654332       24


Q ss_pred             cCCCCCCEEe
Q 025516          222 CKLKSLELLS  231 (251)
Q Consensus       222 ~~l~~L~~L~  231 (251)
                      ..+|+|+.||
T Consensus       143 ~~~P~L~~LD  152 (162)
T d1koha1         143 ERFPKLLRLD  152 (162)
T ss_dssp             TTSTTCCEET
T ss_pred             HHCCCCCEEC
Confidence            6677787775

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.2e-07  Score=78.73  Aligned_cols=100  Identities=19%  Similarity=0.155  Sum_probs=50.9

Q ss_pred             CceEeecCCCcccc------ccCcCCccEEEcCCCcCCc----cccCccccCCCccEEecCCCCCCC----CCCcc---c
Q 025516          114 KLMFLEVPNSDIEQ------LWNSVKLVILNLSGSKSLK----SLPAGIFNLEFLTELDLSGCSKLK----RLPEI---S  176 (251)
Q Consensus       114 ~L~~L~l~~n~i~~------l~~~~~L~~L~l~~n~~~~----~~~~~~~~l~~L~~L~l~~n~~~~----~~~~~---~  176 (251)
                      +|+.|+++++++++      ++.+.++++|+|++|.+..    .++..+...++|++|++++|.+..    .+...   .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            45555565555542      3445566666666665432    123334455666666666664321    01111   0


Q ss_pred             cCCccEEEccccCCcc-----CCcccccCccCCEEeccCCcC
Q 025516          177 SGNIGQLFLSGTAIEE-----LPSSFELLLRLWLLDLSDCKR  213 (251)
Q Consensus       177 ~~~L~~L~l~~n~i~~-----lp~~~~~l~~L~~L~l~~n~~  213 (251)
                      ...|++|++++|+++.     ++..+..+++|+.|++++|.+
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i  124 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL  124 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccc
Confidence            2356666666666552     333445566666666666654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.95  E-value=2.5e-06  Score=61.33  Aligned_cols=105  Identities=13%  Similarity=0.114  Sum_probs=61.2

Q ss_pred             cCCccEEEcCCCcCCc-c----ccCccccCCCccEEecCCCCCCCC----CCccc--cCCccEEEccccCCcc-----CC
Q 025516          131 SVKLVILNLSGSKSLK-S----LPAGIFNLEFLTELDLSGCSKLKR----LPEIS--SGNIGQLFLSGTAIEE-----LP  194 (251)
Q Consensus       131 ~~~L~~L~l~~n~~~~-~----~~~~~~~l~~L~~L~l~~n~~~~~----~~~~~--~~~L~~L~l~~n~i~~-----lp  194 (251)
                      .++|+.|+|++++..+ .    +...+...++|++|++++|.+...    +....  .+.|++|++++|.++.     +.
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            3456666666533222 1    122344455677777776654321    11111  4667788888887762     33


Q ss_pred             cccccCccCCEEeccCCcCCc-------cCcccccCCCCCCEEeccCC
Q 025516          195 SSFELLLRLWLLDLSDCKRLK-------SLPSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       195 ~~~~~l~~L~~L~l~~n~~~~-------~~p~~~~~l~~L~~L~l~~n  235 (251)
                      ..+...+.|+.|++++|.+..       .+...+...++|+.|+++.+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            456667788888888775332       13445566788888888764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=3.5e-06  Score=60.23  Aligned_cols=66  Identities=24%  Similarity=0.091  Sum_probs=52.8

Q ss_pred             cCCccEEEccccCCccCC---cccccCccCCEEeccCCcCCccCcccccCCCCCCEEeccCCcCCCCCC
Q 025516          177 SGNIGQLFLSGTAIEELP---SSFELLLRLWLLDLSDCKRLKSLPSSLCKLKSLELLSLRGCSNLQRLP  242 (251)
Q Consensus       177 ~~~L~~L~l~~n~i~~lp---~~~~~l~~L~~L~l~~n~~~~~~p~~~~~l~~L~~L~l~~n~~~~~~p  242 (251)
                      ++.|++|++++|+|+.++   ..+..+++|+.|++++|.+...-+-.......|+.|++++|++.....
T Consensus        64 ~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          64 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             CCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            789999999999999764   346789999999999999765433334455679999999998876544

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.43  E-value=5e-05  Score=54.25  Aligned_cols=84  Identities=18%  Similarity=0.135  Sum_probs=61.7

Q ss_pred             cCCCccEEecCCCCCCCCC--Cc----c-ccCCccEEEccccCCc-----cCCcccccCccCCEEeccCCcCCcc----C
Q 025516          154 NLEFLTELDLSGCSKLKRL--PE----I-SSGNIGQLFLSGTAIE-----ELPSSFELLLRLWLLDLSDCKRLKS----L  217 (251)
Q Consensus       154 ~l~~L~~L~l~~n~~~~~~--~~----~-~~~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~~~~----~  217 (251)
                      +.++|++|+++++...+.-  ..    . ..+.|++|++++|.+.     .+...+...+.|+.|++++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            4578999999975433321  11    1 1578999999999987     2334566788999999999998743    3


Q ss_pred             cccccCCCCCCEEeccCCcC
Q 025516          218 PSSLCKLKSLELLSLRGCSN  237 (251)
Q Consensus       218 p~~~~~l~~L~~L~l~~n~~  237 (251)
                      ..++...++|++|++++|..
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~  112 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQ  112 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSS
T ss_pred             HHHHHhCCcCCEEECCCCcC
Confidence            34677889999999998743

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.35  E-value=4e-05  Score=54.65  Aligned_cols=106  Identities=13%  Similarity=0.130  Sum_probs=58.5

Q ss_pred             CcCCccEEEcCCCcCCc-c----ccCccccCCCccEEecCCCCCCCCCC----ccc--cCCccEEEccccCCc-----cC
Q 025516          130 NSVKLVILNLSGSKSLK-S----LPAGIFNLEFLTELDLSGCSKLKRLP----EIS--SGNIGQLFLSGTAIE-----EL  193 (251)
Q Consensus       130 ~~~~L~~L~l~~n~~~~-~----~~~~~~~l~~L~~L~l~~n~~~~~~~----~~~--~~~L~~L~l~~n~i~-----~l  193 (251)
                      +.++|++|++++++..+ .    +...+...++|++|++++|.+.....    ...  .+.++.+++++|.++     .+
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            34556666666532121 1    22233345566666666664432111    111  456777777777765     23


Q ss_pred             CcccccCccCCEEec--cCCcCCc----cCcccccCCCCCCEEeccCC
Q 025516          194 PSSFELLLRLWLLDL--SDCKRLK----SLPSSLCKLKSLELLSLRGC  235 (251)
Q Consensus       194 p~~~~~l~~L~~L~l--~~n~~~~----~~p~~~~~l~~L~~L~l~~n  235 (251)
                      ...+...++|+.++|  ++|.+..    .+...+...++|++|+++.+
T Consensus        95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence            455667788886555  4455443    23445667888888888765

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.18  E-value=0.0016  Score=45.91  Aligned_cols=81  Identities=20%  Similarity=0.137  Sum_probs=59.0

Q ss_pred             cCCCccEEecCCCCCCCCCC-----cc--ccCCccEEEccccCCc-----cCCcccccCccCCEEeccCCcCCcc----C
Q 025516          154 NLEFLTELDLSGCSKLKRLP-----EI--SSGNIGQLFLSGTAIE-----ELPSSFELLLRLWLLDLSDCKRLKS----L  217 (251)
Q Consensus       154 ~l~~L~~L~l~~n~~~~~~~-----~~--~~~~L~~L~l~~n~i~-----~lp~~~~~l~~L~~L~l~~n~~~~~----~  217 (251)
                      +.++|++|+++++...+...     ..  ..++|++|++++|.++     .+...+...+.++.+++++|.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            45789999999854333211     11  2678999999999987     2444567789999999999987643    3


Q ss_pred             cccccCCCCCCEEeccC
Q 025516          218 PSSLCKLKSLELLSLRG  234 (251)
Q Consensus       218 p~~~~~l~~L~~L~l~~  234 (251)
                      ...+...++|+.++++.
T Consensus        95 ~~~l~~~~~L~~l~L~l  111 (166)
T d1io0a_          95 VEALQSNTSLIELRIDN  111 (166)
T ss_dssp             HHGGGGCSSCCEEECCC
T ss_pred             HHHHHhCccccEEeecc
Confidence            35678889999877764